BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780940|ref|YP_003065353.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62] (227 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|302391792|ref|YP_003827612.1| RNAse III [Acetohalobium arabaticum DSM 5501] gi|302203869|gb|ADL12547.1| RNAse III [Acetohalobium arabaticum DSM 5501] Length = 234 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 121/228 (53%), Gaps = 6/228 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTL 58 + L+ +I FA+ LL++ALTH S ++ ++ ERLEFLGD +L +++S Sbjct: 7 KEKLEELQSKIDIYFADLDLLQRALTHKSYANENRDLNLKDNERLEFLGDSVLDIVVSEY 66 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 +FN + EG+L+ S+VSA T + ARELDL ++ + +SI AD Sbjct: 67 MFNRYPDYPEGKLAKMRASVVSAPTLAAKARELDLGRYLLLGHGEEMTGGRKRSSILADA 126 Query: 119 VESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E+L+ ++YLD +++A F+ + ++G+ RD KT LQE + PEY Sbjct: 127 FEALVGSIYLDQDLDIAEDFIMKLMKVDIESAEAGEHIRDYKTTLQEMIQKRSNARPEYY 186 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V GPDH FTV V+ + + +G SK+ A+Q AA LK+ Sbjct: 187 VIEEKGPDHSKEFTVEVKFNDRSLGEGTGSSKKEAQQQAAKNALKKLK 234 >gi|325677853|ref|ZP_08157495.1| ribonuclease III [Ruminococcus albus 8] gi|324110407|gb|EGC04581.1| ribonuclease III [Ruminococcus albus 8] Length = 232 Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 5/230 (2%) Query: 1 MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIS 56 M + +KRIGY+F N LL +AL+HSS ++ ++ S ERLEFLGD +L +++S Sbjct: 1 MDEEKNLAEFQKRIGYSFKNDRLLYEALSHSSFANENKKQRHSNERLEFLGDSVLSIVVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +F HF EGEL+ SLV + + + + +L +I + SI + Sbjct: 61 DYIFEHFKHLPEGELTKLRASLVCEKALFEFSHKFELGKYIFLGKGEELTGGRERASIVS 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E++IAA+YLDGG+E A + + + + + + + Sbjct: 121 DAMEAVIAAIYLDGGLEAARKHIMGFLPKDINPAHTETFHDYKTVLQEVIQRNPEEKIEY 180 Query: 177 VTF-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDHD RFTV V+++ +G+ SK++AEQ AA E L GI Sbjct: 181 FLKGEEGPDHDKRFTVQVKLNSNVIGEGVGRSKKSAEQNAAKEALDLMGI 230 >gi|254780940|ref|YP_003065353.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62] gi|254040617|gb|ACT57413.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 227/227 (100%), Positives = 227/227 (100%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF Sbjct: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE Sbjct: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR Sbjct: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT Sbjct: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 >gi|317057716|ref|YP_004106183.1| ribonuclease III [Ruminococcus albus 7] gi|315449985|gb|ADU23549.1| ribonuclease III [Ruminococcus albus 7] Length = 232 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 5/230 (2%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIS 56 M + +K+IGY F N LL +AL+HSS ++ ++ S ERLEFLGD +L +++S Sbjct: 1 MDEQKCLEAFQKKIGYHFKNEKLLYEALSHSSFANENKKQRHSNERLEFLGDSVLSIVVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +F HF EGEL+ SLV + + + +++L +I + SI + Sbjct: 61 DHIFEHFKHLPEGELTKLRASLVCEKALFEFSHKIELGKYIFLGKGEELTGGRERASIVS 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E++IAA+YLDGG+E A + + + + + + + Sbjct: 121 DAMEAVIAAIYLDGGLEAARKHIMNFLPKDLNPAHTDTFHDYKTVLQEIIQRNPEEKVEY 180 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDHD RFTV V+++ +G+ SK+ AEQ AA E L G+ Sbjct: 181 FLKGEDGPDHDKRFTVQVKLNNNVIGEGIGRSKKNAEQNAAKEALALMGV 230 >gi|295696065|ref|YP_003589303.1| ribonuclease III [Bacillus tusciae DSM 2912] gi|295411667|gb|ADG06159.1| ribonuclease III [Bacillus tusciae DSM 2912] Length = 231 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 110/226 (48%), Gaps = 4/226 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTL 58 A ++ LE R+G F N SLL +A THSS + ++ E ERLEFLGD +L LL+S Sbjct: 1 MATKWDELEARLGITFRNASLLRQAFTHSSYRNEHRGDVEDNERLEFLGDAVLELLVSEF 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + EGEL+ ++V + + A L L +IR+ S+ ADV Sbjct: 61 LFRAYPRFPEGELTRMRAAIVCEPSLVRFATALGLDQYIRLGRGEEMSGGRRRPSLLADV 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+LI A++LD G+E A F+ + + D KT LQE Y++ Sbjct: 121 YEALIGAIFLDQGLEAAREFLQRMMFPALQREQAPILDDYKTMLQEHVQKVGLGPLTYRI 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T GP H F V I G A +G SK+ AEQ AA E L + Sbjct: 181 TDERGPAHHREFVAQVWIGGQAYGEGSGRSKKEAEQHAAREALMKL 226 >gi|291530279|emb|CBK95864.1| RNAse III [Eubacterium siraeum 70/3] Length = 226 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 114/224 (50%), Gaps = 3/224 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDS 65 + LE+ IGY F N LL++ALTHSS ++ + S ERLEFLGD +L +++S LF + + Sbjct: 2 TELEQIIGYTFKNPELLKEALTHSSYTNGKHLRSNERLEFLGDSVLSIVVSEHLFENLTN 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ S+V AR++DL +I + SI AD E+LIAA Sbjct: 62 LPEGQLTKIRASVVCENALYPFARKIDLGKYIFLGKGEEHTGGRDRHSILADAFEALIAA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGG E A F+ + S D KT LQE Y+++ SG Sbjct: 122 IYLDGGFEAARNFILPFIPPLDKLSTGKFLLGDYKTVLQEIIQQNPEERVTYEISDESGQ 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 H+ +FT V ++G G SK+ AEQ AA E + G T Sbjct: 182 AHNKQFTANVLLNGQIIGTGKGKSKKEAEQSAAKEAISLMGYET 225 >gi|167751472|ref|ZP_02423599.1| hypothetical protein EUBSIR_02468 [Eubacterium siraeum DSM 15702] gi|167655280|gb|EDR99409.1| hypothetical protein EUBSIR_02468 [Eubacterium siraeum DSM 15702] gi|291557094|emb|CBL34211.1| RNAse III [Eubacterium siraeum V10Sc8a] Length = 226 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 115/224 (51%), Gaps = 3/224 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDS 65 + LE+ IGY F N LL++ALTHSS ++ + S ERLEFLGD +L +++S LF + + Sbjct: 2 TELEQIIGYTFKNPELLKEALTHSSYTNGKHLRSNERLEFLGDSVLSIVVSEHLFENLTN 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ S+V AR++DL +I + SI AD E+LIAA Sbjct: 62 LPEGQLTKIRASVVCENALYPFARKIDLGKYIFLGKGEEHTGGRDRHSILADAFEALIAA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGG E A +F+ + S D KT LQE Y+++ SG Sbjct: 122 IYLDGGFEAARSFILPFIPPLDKLSTGKFLLGDYKTVLQEIIQQNPEERVTYEISDESGQ 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 H+ +FT V ++G G SK+ AEQ AA E + G T Sbjct: 182 AHNKQFTANVLLNGQIIGTGKGKSKKEAEQSAAKEAISLMGYET 225 >gi|257440564|ref|ZP_05616319.1| ribonuclease III [Faecalibacterium prausnitzii A2-165] gi|257196887|gb|EEU95171.1| ribonuclease III [Faecalibacterium prausnitzii A2-165] Length = 224 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 117/222 (52%), Gaps = 7/222 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFD 64 LE IGY F N LLE ALTH+S ++ + + ERLEFLGD +L ++ + LF+ + Sbjct: 4 QLETIIGYKFKNPKLLETALTHTSYANESRTPVQHNERLEFLGDSVLQIVSADYLFHAYA 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ +SLVS Q A+E++L ++R+ + S+ +D E++IA Sbjct: 64 DRPEGDLTRIRSSLVSEGALFQFAQEINLGEYLRLGRGEERCGGRTRPSVVSDAFEAVIA 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 ALYLDGG+EVA +F+ + D KT LQE Y V SGPD Sbjct: 124 ALYLDGGMEVAKSFIL----PFITEGKHAEADYKTRLQEIVQQNPEERLSYVVEQESGPD 179 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 HD F V V + A+G SK+ AEQ AA E LK G+ Sbjct: 180 HDKHFVVAVRFNSDKVARGEGRSKKMAEQHAAREALKLLGVI 221 >gi|160934422|ref|ZP_02081809.1| hypothetical protein CLOLEP_03295 [Clostridium leptum DSM 753] gi|156867095|gb|EDO60467.1| hypothetical protein CLOLEP_03295 [Clostridium leptum DSM 753] Length = 237 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 121/224 (54%), Gaps = 4/224 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 + LE+ +GYAF N LL+ ALTHSS ++ S ERLEFLGD +L +++S +F Sbjct: 13 DFRRLEENLGYAFQNPKLLKTALTHSSYANEAHNGTRSNERLEFLGDAVLSIVVSDYIFR 72 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGEL+ SLV ++ + +R L++ SF+R+S + + +SI AD E+ Sbjct: 73 NCPHLPEGELTKMRASLVCEKSLQRFSRVLEIGSFLRLSRGEQNSGGAERSSILADAFEA 132 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++AA+YLDGG+E A FV ++ +D KT LQE Y + Sbjct: 133 VLAAIYLDGGMEKAREFVLRFTVPEMENPKPKAFKDYKTALQEIVQQNPEEKLNYVLVGE 192 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGPDH+ F V V ++ +G SK+ AEQ AA E L+ G Sbjct: 193 SGPDHNKHFVVEVHLNSNVIGKGGGRSKKEAEQQAAREALELMG 236 >gi|291542641|emb|CBL15751.1| RNAse III [Ruminococcus bromii L2-63] Length = 225 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 L+KRIGY F N LL +ALTHSS ++ ++ + ERLEFLGD +L +++S +F H Sbjct: 2 EDLQKRIGYTFKNTDLLTEALTHSSYANEHKAKHIKYNERLEFLGDAVLSIVVSDYIFKH 61 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EGEL+ SLV +T + A++++L ++ +S R + + SI +D E+L Sbjct: 62 CPELPEGELTKLRASLVCEKTLFEFAKQIELGKYLVLSKGERNNGGAERPSILSDAFEAL 121 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181 IAA+Y+DGGI+ A + + S K + D KT LQE G EY + S Sbjct: 122 IAAIYIDGGIDPASKHILNFVIPAIKNSKKKKLNDYKTALQEIIQKNPGEQLEYVLVGES 181 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH+ F V V ++ +G SK+ AEQ AA E L+ G Sbjct: 182 GPDHNKHFVVEVHLNSNVIGKGGGRSKKEAEQQAAREALELMG 224 >gi|269123548|ref|YP_003306125.1| ribonuclease III [Streptobacillus moniliformis DSM 12112] gi|268314874|gb|ACZ01248.1| ribonuclease III [Streptobacillus moniliformis DSM 12112] Length = 233 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 6/230 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L +I Y F N+ LL +ALTHSS + + + ERLEFLGD ++ L+ + Sbjct: 1 MKKMDLEKLMSKINYTFKNKKLLLEALTHSSYVNEHNFPNIKDNERLEFLGDSVMDLITT 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ + + EGELS + ++S S ++R+L+L ++I +S+ S+ Sbjct: 61 EYIYKNNLKSNEGELSKIKSQIISETVFSTISRDLNLGNYIFLSNGENMSGGRERNSVLG 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPE 174 DV E+++ A+YLD V K + + ++ D K+ LQE K+ VTP Sbjct: 121 DVFEAMVGAIYLDSDYATTRDVVLKLLESKINNLDKIEWVSDYKSALQEITQLKYKVTPI 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y V GPDHD F + V + +G+ SK+ AE++AA + +++ Sbjct: 181 YTVLSEIGPDHDKTFEIEVRVEERLYGKGVAKSKKMAEKIAAKQAIEKLN 230 >gi|254469250|ref|ZP_05082655.1| ribonuclease III [Pseudovibrio sp. JE062] gi|211961085|gb|EEA96280.1| ribonuclease III [Pseudovibrio sp. JE062] Length = 235 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 103/224 (45%), Positives = 145/224 (64%), Gaps = 3/224 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+RIGY F N+ LL +ALTH+S + + +SY+RLEFLGDR+LGL I+T+L +F Sbjct: 11 AALEERIGYKFTNKELLVRALTHASALPVAKASLQSYQRLEFLGDRVLGLAIATMLEENF 70 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGEL+ R N LV ETC++V++ + + +RV T+I AD+ ESLI Sbjct: 71 PKADEGELARRLNQLVKRETCAEVSKVIGIGQHMRVGEAEAHTGGRTKTAILADMCESLI 130 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AA+YLD G + A F+ +Y+ +R + RDAKT LQEWA +K TP+Y+ RSGP Sbjct: 131 AAIYLDSGFDEAENFIKRYFAERMVSYTGPLRDAKTTLQEWAQSKGRPTPQYETISRSGP 190 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 DH P F + V + G+ P + + SKR AEQ AA +L+REG+W+ Sbjct: 191 DHAPIFKIRVNVEGVDPGEAVGSSKRIAEQSAAENILRREGVWS 234 >gi|160946001|ref|ZP_02093227.1| hypothetical protein FAEPRAM212_03534 [Faecalibacterium prausnitzii M21/2] gi|158443732|gb|EDP20737.1| hypothetical protein FAEPRAM212_03534 [Faecalibacterium prausnitzii M21/2] gi|295103252|emb|CBL00796.1| RNAse III [Faecalibacterium prausnitzii SL3/3] Length = 224 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 116/222 (52%), Gaps = 7/222 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFD 64 LE IGY F N LLE ALTH+S ++ + + ERLEFLGD +L ++ + LF+ + Sbjct: 4 QLETIIGYKFKNPELLEIALTHTSYANESRTPVKHNERLEFLGDSVLQIVSADYLFHAYA 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ SLVS Q A+E+DL ++R+ + S+ +D E++IA Sbjct: 64 DRPEGDLTRIRASLVSESALFQFAQEIDLGEYLRLGRGEERCGGRTRPSVVSDAFEAVIA 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 ALYLDGG+EVA F+ + D KT LQE Y V SGPD Sbjct: 124 ALYLDGGMEVARKFIL----PFITEGKHAEADYKTRLQEIVQQNPEERLSYVVESESGPD 179 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 HD F V V + A+G SK+AAEQ AA E LK G+ Sbjct: 180 HDKHFVVAVRFNSDRVARGEGRSKKAAEQCAAKEALKLLGVI 221 >gi|295100361|emb|CBK97906.1| RNAse III [Faecalibacterium prausnitzii L2-6] Length = 224 Score = 167 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 115/222 (51%), Gaps = 7/222 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFD 64 LE IGY F + LLE ALTH+S ++ + + ERLEFLGD +L ++ + LF+ + Sbjct: 4 QLETIIGYKFKHPELLETALTHTSYANETRPPVKHNERLEFLGDSVLQIVSADYLFHAYA 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ +SLVS Q A+E++L ++R+ S+ +D E+LIA Sbjct: 64 DRPEGDLTRIRSSLVSEGALFQFAQEINLGDYLRLGRGEEHCGGRTRPSVVSDAFEALIA 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 ALYLDGG+EVA F+ + D KT LQE Y V +GPD Sbjct: 124 ALYLDGGMEVAKNFIL----PFITEGKHAEADYKTRLQEIVQQNPEEKLSYVVEQETGPD 179 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 H+ F V V + A+G SK+ AEQ AA E LK G+ Sbjct: 180 HNKHFVVAVRFNSDCVARGEGRSKKMAEQHAAREALKLLGVI 221 >gi|126698844|ref|YP_001087741.1| ribonuclease III [Clostridium difficile 630] gi|254974792|ref|ZP_05271264.1| ribonuclease III [Clostridium difficile QCD-66c26] gi|255092180|ref|ZP_05321658.1| ribonuclease III [Clostridium difficile CIP 107932] gi|255100264|ref|ZP_05329241.1| ribonuclease III [Clostridium difficile QCD-63q42] gi|255306204|ref|ZP_05350376.1| ribonuclease III [Clostridium difficile ATCC 43255] gi|255313919|ref|ZP_05355502.1| ribonuclease III [Clostridium difficile QCD-76w55] gi|255516598|ref|ZP_05384274.1| ribonuclease III [Clostridium difficile QCD-97b34] gi|255649698|ref|ZP_05396600.1| ribonuclease III [Clostridium difficile QCD-37x79] gi|260682854|ref|YP_003214139.1| ribonuclease III [Clostridium difficile CD196] gi|260686452|ref|YP_003217585.1| ribonuclease III [Clostridium difficile R20291] gi|306519814|ref|ZP_07406161.1| ribonuclease III [Clostridium difficile QCD-32g58] gi|115250281|emb|CAJ68103.1| ribonuclease III [Clostridium difficile] gi|260209017|emb|CBA62108.1| putative ribonuclease III [Clostridium difficile CD196] gi|260212468|emb|CBE03371.1| putative ribonuclease III [Clostridium difficile R20291] Length = 236 Score = 167 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNH 62 E I Y F N+ + +ALTHSS S+ ++ ERLEFLGD +LG++IS LFN Sbjct: 10 NIQRFENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIVISDYLFNE 69 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EGEL+ ++V ++ S+VA +++L + + TSI AD E++ Sbjct: 70 EANLPEGELTKLRANIVCEDSLSEVANDINLGIHMLLGRGEEATGGRHRTSILADAFEAV 129 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFR 180 IAA+YLDGG E A F+ + + S K RD KT LQE Y++ Sbjct: 130 IAAIYLDGGFESARQFILHHMENIIYDSRKGNIFRDYKTHLQEVLQGNGENNIWYRLIEE 189 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDH+ RF + V I+ G SK+ AEQ+AA LK+ +W Sbjct: 190 KGPDHNKRFVMEVGINDDVLGIGEGKSKKEAEQLAAKIALKK-KLW 234 >gi|167463674|ref|ZP_02328763.1| ribonuclease III [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382556|ref|ZP_08056436.1| ribonuclease III-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153472|gb|EFX45877.1| ribonuclease III-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 287 Score = 167 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 113/230 (49%), Gaps = 6/230 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ L+ RIG F N LL +A THSS + ++ + ERLEFLGD +L L++S Sbjct: 55 MNG-DLKELQARIGITFNNVDLLRQAFTHSSYVNEHRITNHKDNERLEFLGDAVLELMVS 113 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EGEL+ S+V + A L+ S++ + ++ A Sbjct: 114 EHLYFTYPRRAEGELTKLRASIVCEPSLVNFAERLNFGSYVLLGKGEEMTGGRTRPALLA 173 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEY 175 D+ ES I ALYLD G+E F+ K+ GK D KT+LQE+ T EY Sbjct: 174 DLFESFIGALYLDQGLEPVRDFLIKHVFPHISNEGKLLVVDYKTQLQEYVQHHNLGTLEY 233 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 ++ GP H+ F V++ G +G+ SK+ AEQ AA++ + + Sbjct: 234 RIVEERGPAHEREFVAEVQMDGKILGKGVGRSKKEAEQQAASKASVKLNV 283 >gi|315652049|ref|ZP_07905050.1| ribonuclease III [Eubacterium saburreum DSM 3986] gi|315485696|gb|EFU76077.1| ribonuclease III [Eubacterium saburreum DSM 3986] Length = 228 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 115/228 (50%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIS 56 M+ + L++ +GY + NR LL++ALTHSS ++ + S ERLEFLGD +L L+ S Sbjct: 1 MNN-NLNELQELLGYEYKNRELLKQALTHSSYANEHQLGKNGSNERLEFLGDAVLELVSS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 + + EGEL+ S V A + L+ FIR+ F SI + Sbjct: 60 EFFYEVYPDKPEGELTKIRASFVCEPALVDCAGNIRLSEFIRLGKGEEHTGGRFRPSIIS 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E++I ++YLDGG A + K+ F D+KT LQE ++ EY Sbjct: 120 DTFEAVIGSIYLDGGFANAKEVILKFILNGYENKV-FFYDSKTILQEIIQSQDSRPVEYC 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + GPDH +F V V I+G G SK++AEQ AA E LK+ G Sbjct: 179 LLSEEGPDHLKKFVVAVNINGQVAGVGEGVSKKSAEQAAAYEALKKLG 226 >gi|239826585|ref|YP_002949209.1| ribonuclease III [Geobacillus sp. WCH70] gi|259491901|sp|C5D8T6|RNC_GEOSW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|239806878|gb|ACS23943.1| ribonuclease III [Geobacillus sp. WCH70] Length = 246 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 105/225 (46%), Gaps = 5/225 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L+K+IG F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 17 KFKELQKKIGIFFTNEKLLIQAFTHSSYVNEHRRRPHEDNERLEFLGDAVLELTVSQYLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EGEL+ ++V + + A L + + ++ ADV E Sbjct: 77 KKFPHMSEGELTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G++ F+ + + + D K++LQE EY + Sbjct: 137 AFIGALYLDQGMDAVMQFLGQTIFPKIDEGAFSHVMDFKSQLQELVQRDGIGVLEYSILE 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H+ F V ++G G+ SK+ AEQ AA L++ Sbjct: 197 EKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQKLK 241 >gi|255655258|ref|ZP_05400667.1| ribonuclease III [Clostridium difficile QCD-23m63] gi|296451243|ref|ZP_06892983.1| ribonuclease III [Clostridium difficile NAP08] gi|296880405|ref|ZP_06904368.1| ribonuclease III [Clostridium difficile NAP07] gi|296259849|gb|EFH06704.1| ribonuclease III [Clostridium difficile NAP08] gi|296428646|gb|EFH14530.1| ribonuclease III [Clostridium difficile NAP07] Length = 236 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNH 62 E I Y F N+ + +ALTHSS S+ ++ ERLEFLGD +LG++IS LFN Sbjct: 10 NIQRFENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIVISDYLFNE 69 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EGEL+ ++V ++ S+VA +++L + + TSI AD E++ Sbjct: 70 EANLPEGELTKLRANIVCEDSLSEVANDINLGVHMLLGRGEEATGGRHRTSILADAFEAV 129 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFR 180 IAA+YLDGG E A F+ + + S K RD KT LQE Y++ Sbjct: 130 IAAIYLDGGFESARQFILHHMENIIYDSRKGNIFRDYKTHLQEVLQGNGENNIWYRLIEE 189 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDH+ RF + V I+ G SK+ AEQ+AA LK+ +W Sbjct: 190 KGPDHNKRFVMEVGINEDVLGIGEGKSKKEAEQLAAKIALKK-KLW 234 >gi|313114998|ref|ZP_07800491.1| ribonuclease III [Faecalibacterium cf. prausnitzii KLE1255] gi|310622689|gb|EFQ06151.1| ribonuclease III [Faecalibacterium cf. prausnitzii KLE1255] Length = 224 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 117/222 (52%), Gaps = 7/222 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFD 64 LE IGY F N LLE ALTH+S ++ + + ERLEFLGD +L ++ + LF+ + Sbjct: 4 QLETIIGYKFKNPELLEIALTHTSYANESRTPVKHNERLEFLGDSVLQIVSADYLFHAYA 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ SLVS Q A+E+DL ++R+ + S+ +D E+LIA Sbjct: 64 DRPEGDLTRIRASLVSEGALFQFAQEIDLGEYLRLGRGEERCGGRTRPSVVSDAFEALIA 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 ALYLDGG++VA +F+ + D KT LQE Y V SGPD Sbjct: 124 ALYLDGGMDVARSFIL----PFITEGKHAEADYKTRLQEIVQQNPEERLSYVVESESGPD 179 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 HD F V V + A+G SK+AAEQ AA E LK G+ Sbjct: 180 HDKHFVVAVRFNSDRVARGEGRSKKAAEQCAAKEALKLLGVI 221 >gi|225019245|ref|ZP_03708437.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum DSM 5476] gi|224947876|gb|EEG29085.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum DSM 5476] Length = 228 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 112/223 (50%), Gaps = 5/223 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNH 62 EK IGY F N+ LLE+ALTHSS ++ + ++ ERLEFLGD ++ L+I+ LF + Sbjct: 2 KNFEKTIGYTFHNQKLLEQALTHSSFTNETGRHHHKNNERLEFLGDSVVSLIIANHLFVN 61 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGEL+ SLV + ++ A +DL + + + S D E+L Sbjct: 62 FPDMPEGELTKLRASLVCDRSLAEFAGRIDLGNQLIMGKGEEHSGGRQRRSNLEDAFEAL 121 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A+YLDGG+E A +FV + + S D KT LQE Y + S Sbjct: 122 VGAIYLDGGLEAARSFVLGFIPKTLDLNSISRVTDYKTALQEIIQKNPEEKLSYVLVSES 181 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDHD F V ++ G SK+ AEQ AA + L+ G Sbjct: 182 GPDHDKMFEAEVHLNSNVIGTGSGKSKKQAEQNAAKQALELMG 224 >gi|295399780|ref|ZP_06809761.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93] gi|312111708|ref|YP_003990024.1| ribonuclease III [Geobacillus sp. Y4.1MC1] gi|294978183|gb|EFG53780.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93] gi|311216809|gb|ADP75413.1| ribonuclease III [Geobacillus sp. Y4.1MC1] Length = 246 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 105/225 (46%), Gaps = 5/225 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L+K+IG F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 17 KFKELQKKIGIFFTNEKLLIQAFTHSSYVNEHRKRPHEDNERLEFLGDAVLELTVSQYLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EGEL+ ++V + + A L + + ++ ADV E Sbjct: 77 KKFPHMSEGELTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G++ F+ + + + D K++LQE EY + Sbjct: 137 AFIGALYLDKGMDAVMQFLGQTIFPKIDEGAFSHVMDFKSQLQELVQRDGIGVLEYSILE 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H+ F V ++G G+ SK+ AEQ AA L++ Sbjct: 197 EKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQKLK 241 >gi|297530632|ref|YP_003671907.1| ribonuclease III [Geobacillus sp. C56-T3] gi|297253884|gb|ADI27330.1| ribonuclease III [Geobacillus sp. C56-T3] Length = 246 Score = 165 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L+K+IG F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 17 KFQELQKKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+L+ ++V + + A L + + ++ ADV E Sbjct: 77 QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G++ F++K + + D K++LQE T EY + Sbjct: 137 AFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILE 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V ++G G+ SK+ AEQ AA L+ Sbjct: 197 EKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALETL 240 >gi|261419391|ref|YP_003253073.1| ribonuclease III [Geobacillus sp. Y412MC61] gi|319766206|ref|YP_004131707.1| ribonuclease III [Geobacillus sp. Y412MC52] gi|261375848|gb|ACX78591.1| ribonuclease III [Geobacillus sp. Y412MC61] gi|317111072|gb|ADU93564.1| ribonuclease III [Geobacillus sp. Y412MC52] Length = 246 Score = 165 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L+K+IG F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 17 KFQELQKKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+L+ ++V + + A L + + ++ ADV E Sbjct: 77 QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G++ F++K + + D K++LQE T EY + Sbjct: 137 AFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILE 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V ++G G+ SK+ AEQ AA L+ Sbjct: 197 EKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALETL 240 >gi|78044311|ref|YP_360276.1| ribonuclease III [Carboxydothermus hydrogenoformans Z-2901] gi|90101616|sp|Q3AC58|RNC_CARHZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|77996426|gb|ABB15325.1| ribonuclease III [Carboxydothermus hydrogenoformans Z-2901] Length = 235 Score = 165 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 117/230 (50%), Gaps = 6/230 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M +LEK +G+ F N S+L A+TH S + + E ERLEFLGD +L L IS Sbjct: 1 MDKENLISLEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFIS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F EG+L+ + LV AE+ ++A +++L F+R+ K + S A Sbjct: 61 DYLFRTFPQKSEGDLTKLRSRLVCAESLYELAFKINLDKFLRLGKGEFKAGGNQRMSNLA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPE 174 + VE++I A+Y D GIE A +F+ + + ++ + +D KT LQE + Sbjct: 121 NAVEAVIGAVYFDCGIEAAFSFITRLYGEKLKPENLEQLPKDEKTTLQELLQKEKNNVLR 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y++ GP H FT V I+ A G SK+ AEQ AA + L+ Sbjct: 181 YEILLEEGPPHQKIFTAGVIINDKLIATGRGKSKKEAEQEAAKKALELLK 230 >gi|328543513|ref|YP_004303622.1| ribonuclease III [polymorphum gilvum SL003B-26A1] gi|326413257|gb|ADZ70320.1| Ribonuclease III [Polymorphum gilvum SL003B-26A1] Length = 234 Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 111/224 (49%), Positives = 147/224 (65%), Gaps = 3/224 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHF 63 TLE R+GY+F +++LL +ALTH+S ++ + SY+RLEFLGDR+LGL ++T+L HF Sbjct: 10 DTLEGRLGYSFQDKALLMQALTHASALNAGGAARGSYQRLEFLGDRVLGLAVATMLHRHF 69 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGEL+ R N +V ETC+ +A ELDL +R+S + T++ AD+ E++I Sbjct: 70 PLADEGELARRLNHMVKRETCADIALELDLGEAMRISQSEAQTGGRRKTALLADICEAVI 129 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AA+YLDGG A FV + W+ R L RDAKT LQEWA +K P Y+VT R GP Sbjct: 130 AAIYLDGGFPAAEDFVRRLWEPRMLAWSGPLRDAKTTLQEWAQSKGLPAPGYQVTTREGP 189 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 DH P F V V +SG AP +G SKR AEQ AA VL+REG+WT Sbjct: 190 DHAPVFVVAVTVSGYAPGEGRGGSKRIAEQNAAEAVLRREGVWT 233 >gi|138894713|ref|YP_001125166.1| ribonuclease III [Geobacillus thermodenitrificans NG80-2] gi|196247668|ref|ZP_03146370.1| Ribonuclease III [Geobacillus sp. G11MC16] gi|189043318|sp|A4IM67|RNC_GEOTN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|134266226|gb|ABO66421.1| Ribonuclease III [Geobacillus thermodenitrificans NG80-2] gi|196212452|gb|EDY07209.1| Ribonuclease III [Geobacillus sp. G11MC16] Length = 246 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L+K+IG F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 17 KFQELQKKIGITFQNEKLLIQAFTHSSYVNEHRRRFHEDNERLEFLGDAVLELTVSQYLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+L+ ++V + + A L + + ++ ADV E Sbjct: 77 QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G++V F+ + + + D K++LQE T EY + Sbjct: 137 AFIGALYLDQGMDVVLRFLGQTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILE 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V ++G G+ SK+ AEQ AA L+ Sbjct: 197 EKGPAHNKEFVARVALNGQELGVGVGRSKKEAEQHAAQMALETL 240 >gi|42521037|ref|NP_966952.1| ribonuclease III, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225630900|ref|YP_002727691.1| ribonuclease III, putative [Wolbachia sp. wRi] gi|225677311|ref|ZP_03788288.1| ribonuclease III, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|81652137|sp|Q73FT3|RNC_WOLPM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807910|sp|C0R4Q8|RNC_WOLWR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|42410778|gb|AAS14886.1| ribonuclease III, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225590638|gb|EEH11888.1| ribonuclease III, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225592881|gb|ACN95900.1| ribonuclease III, putative [Wolbachia sp. wRi] Length = 232 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 126/228 (55%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56 M +L + K I Y F N ++LE+ALTH S++ ++ YERLEFLGD +L +++S Sbjct: 1 MKSLN-DAISKIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F KEG L+ R LV T + VA+E+ L SFI +++ R + Sbjct: 60 ATLFKLFPEEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCNGGRCNLKNLE 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + +E+LI A+Y+DGG+E F+ +YW++ A +D KT LQEW PEY+ Sbjct: 120 NSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQKNKLPLPEYE 179 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + ++GP H+P FT+ V I SK+ AEQ AA +L++ G Sbjct: 180 LVKQTGPAHNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKIG 227 >gi|99035124|ref|ZP_01314908.1| hypothetical protein Wendoof_01000254 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 234 Score = 164 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 126/228 (55%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56 M +L + K I Y F N ++LE+ALTH S++ ++ YERLEFLGD +L +++S Sbjct: 3 MKSLN-DAISKIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVS 61 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F KEG L+ R LV T + VA+E+ L SFI +++ R + Sbjct: 62 ATLFKLFPEEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCNGGRCNLKNLE 121 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + +E+LI A+Y+DGG+E F+ +YW++ A +D KT LQEW PEY+ Sbjct: 122 NSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQKNKLPLPEYE 181 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + ++GP H+P FT+ V I SK+ AEQ AA +L++ G Sbjct: 182 LVKQTGPAHNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKIG 229 >gi|310658889|ref|YP_003936610.1| ribonuclease 3 [Clostridium sticklandii DSM 519] gi|308825667|emb|CBH21705.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Clostridium sticklandii] Length = 229 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 121/230 (52%), Gaps = 7/230 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M + Y L+K+I Y F + LL++ALTHSS S+ Y++ + ERLEFLGD ILGL+IS Sbjct: 1 MKSKSY-ELQKKINYEFQDLKLLKEALTHSSYSNEYKKIKNRNNERLEFLGDSILGLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF EGEL+ ++V + +A+ + L ++ + SI A Sbjct: 60 NYLFRLKKELPEGELTKIRAAIVCERSLKDIAKSIHLGEYLYLGKGEESTGGRTRDSILA 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPE 174 D E+LIAA+YLDGG A FV ++ + GK RD KT+LQE Sbjct: 120 DATEALIAAIYLDGGFRKATDFVLEHMGDIISQAIQGKIMRDYKTQLQELIQKDNKENII 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 YK+ + GPDHD F + V + G+ SK+ AEQ AA + +++E Sbjct: 180 YKLVDQLGPDHDKTFKMNVFLGEKLIGTGIGKSKKEAEQEAAKDAMEKEN 229 >gi|317131320|ref|YP_004090634.1| ribonuclease III [Ethanoligenens harbinense YUAN-3] gi|315469299|gb|ADU25903.1| ribonuclease III [Ethanoligenens harbinense YUAN-3] Length = 226 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 120/224 (53%), Gaps = 5/224 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFN 61 LEK +GY FA++SLLE ALTHSS ++ ++ ERLEFLGD +LG++ + L+ Sbjct: 2 LEELEKNLGYTFADKSLLENALTHSSYANEMKKHSCGSNERLEFLGDAVLGIISAEYLYF 61 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H EGEL+ S+V + AR ++L ++R+ +SI AD E+ Sbjct: 62 HHTRVPEGELTRLRASMVCERSLQGFARTVELGRWLRLGRGEENTGGRERSSILADAFEA 121 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFR 180 +IAA+Y+DGG A FV ++ + RRD KTELQE G EY + Sbjct: 122 VIAAIYIDGGFPAAKRFVTRFADSFFAAHLENGRRDYKTELQEIVQKNHGEKLEYVLVGE 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGPDHD +F V V ++ G SK+ AEQ+AA E L G Sbjct: 182 SGPDHDKQFLVEVHLNNNCIGAGRGGSKKEAEQMAAREALSLMG 225 >gi|323705471|ref|ZP_08117046.1| ribonuclease III [Thermoanaerobacterium xylanolyticum LX-11] gi|323535373|gb|EGB25149.1| ribonuclease III [Thermoanaerobacterium xylanolyticum LX-11] Length = 232 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 120/232 (51%), Gaps = 6/232 (2%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIS 56 M + RY LEK +GY F N+ LL+ ALTHSS ++ + S ERLEFLGD +L ++IS Sbjct: 1 MELSDRYENLEKNMGYTFNNKKLLKNALTHSSWANESKNFLSSNERLEFLGDSVLSIVIS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + +EG LS +V + ++ ARE+D+ ++ + SI A Sbjct: 61 EYLYKNRTDLEEGYLSKYRAEIVCEPSLARCAREIDIGKYLNIGRGEEMTGGRNRDSILA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPE 174 D +E+LIAA+YLD ++ V + +++ + RD KT+LQE Sbjct: 121 DAMEALIAAVYLDSDLKTVSEVVLRLFEKIINEVLSGLIYRDYKTKLQEVTQKMGSERVI 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 YK+ GPDH+ F + V + +G SK+ AEQ AA E L + G+ Sbjct: 181 YKLIDEYGPDHNKMFVIEVFVGENRLGRGKGRSKKEAEQYAAMEALSKMGLI 232 >gi|56419727|ref|YP_147045.1| ribonuclease III [Geobacillus kaustophilus HTA426] gi|81347639|sp|Q5L0Q3|RNC_GEOKA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56379569|dbj|BAD75477.1| dsRNA-specific ribonuclease [Geobacillus kaustophilus HTA426] Length = 246 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ L+ +IG F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 17 KFQELQNKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+L+ ++V + + A L + + ++ ADV E Sbjct: 77 QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G++ F++K + + D K++LQE T EY + Sbjct: 137 AFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILE 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V ++G G+ SK+ AEQ AA L+ Sbjct: 197 EKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALETL 240 >gi|220928138|ref|YP_002505047.1| ribonuclease III [Clostridium cellulolyticum H10] gi|219998466|gb|ACL75067.1| ribonuclease III [Clostridium cellulolyticum H10] Length = 236 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 84/234 (35%), Positives = 118/234 (50%), Gaps = 10/234 (4%) Query: 1 MSALRY----STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILG 52 M+ +RY S LE IGY F N+ ++ A+THSS ++ + + ERLEFLGD +LG Sbjct: 1 MAEIRYDNRISELEDIIGYTFKNKDIIFAAVTHSSYANEKKSRKLKYNERLEFLGDSVLG 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L IS LF + EGELSV +V + SQ A ++ L ++ + Sbjct: 61 LTISEYLFQKKPNLPEGELSVTRAKIVCENSLSQCATDIGLGKYLLLGKGEELSGGREKI 120 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFG 170 S+ +D E+LI ALY+DGG E A +F+ +Y + K D KT+LQE Sbjct: 121 SLLSDAFEALIGALYIDGGFETAKSFIYRYMDKIIKSCIEGKLFYDYKTQLQELVQQNGE 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y VT + GPDH+ F V+I+G +G SK+ AEQ AA L Sbjct: 181 QQITYSVTDQFGPDHNKTFITEVKINGAIQGRGKGHSKKEAEQNAAKNALNNLK 234 >gi|20807916|ref|NP_623087.1| dsRNA-specific ribonuclease [Thermoanaerobacter tengcongensis MB4] gi|22654052|sp|Q8R9W3|RNC_THETN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|20516484|gb|AAM24691.1| dsRNA-specific ribonuclease [Thermoanaerobacter tengcongensis MB4] Length = 228 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 122/226 (53%), Gaps = 5/226 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62 + LE++I Y F +++LL +ALTHSS +H + S ERLEFLGD +L L+IS L+ + Sbjct: 2 LTYLEQKINYEFKDKTLLLEALTHSSWAHEGKNEKVSNERLEFLGDSVLSLVISEYLYKN 61 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 +EG LS +V + ++ AR+++L SF+R+ SI AD +E+L Sbjct: 62 RKDLEEGSLSKYRAEIVCEPSLARCARKIELGSFLRMGKGEEISGGRDRDSILADAMEAL 121 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +AA+YLDGG+E + +K+ + K RD KT LQE + Y++ Sbjct: 122 LAAVYLDGGLEAVRRVILDLFKEIIDEVLKGIIYRDYKTRLQEVVQSMEVGKITYELVEE 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDH+ F V+I + G SK+ +EQ AA E L + GI Sbjct: 182 IGPDHNKTFVTQVKIGDVVLGIGQGKSKKESEQAAAMEALSKLGIL 227 >gi|326791395|ref|YP_004309216.1| ribonuclease III [Clostridium lentocellum DSM 5427] gi|326542159|gb|ADZ84018.1| ribonuclease III [Clostridium lentocellum DSM 5427] Length = 240 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 111/226 (49%), Gaps = 7/226 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 ++ +++++ Y F N +LLE+ALTHSS ++ ++ ERLEFLGD IL L+IS Sbjct: 10 KSIVLDEMQRKLSYTFTNSNLLEEALTHSSYANEHRNERVKDNERLEFLGDAILDLIISE 69 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF EG+LS S+V + +++AR + L +I + SI AD Sbjct: 70 YLFKKHPEMPEGDLSKIRASIVCEASLAKMARFIGLGEYILLGKGEEMTGGRERASILAD 129 Query: 118 VVESLIAALYLDGGIEVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 E+L AL+LDGG A F+ ++ D KT LQE Sbjct: 130 GFEALTGALFLDGGFNEAKCFLTDTLIAQVEQVASLEDLYTDYKTLLQECIQKVSNAPIH 189 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y+V GPDHD F V V ++ +G+ SK+ AEQ AA + L Sbjct: 190 YEVVGEEGPDHDKYFYVEVYHDTISLGRGIGKSKKEAEQDAAKKAL 235 >gi|306819680|ref|ZP_07453341.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552246|gb|EFM40176.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 233 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 7/229 (3%) Query: 1 MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLI 55 M +E IGY F N++ L+ ALTHSS + ++ + ERLEFLGD +LGL++ Sbjct: 1 MKEKDRLILEQVENTIGYKFKNKNYLQIALTHSSYVNEHKLTKDNERLEFLGDSVLGLIV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S +F + S KEGEL+ +++V ++ +A +L + +I++ + + SI Sbjct: 61 SNYIFAYKSSLKEGELTKIRSTIVCEKSLMHIAEKLKIGQYIKLGKGEKISGGAKRASIL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTP 173 AD VE++IAA+YLD + +V + K D K++LQE G T Sbjct: 121 ADAVEAMIAAIYLDSDFDNVSKYVLDWLGDTIKNALDNKKNDDYKSKLQEEVQKVRGRTL 180 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +Y++ GPDH+ FT+ V G SK+ AEQ+AA + L++ Sbjct: 181 KYELIAMKGPDHERTFTIGVYCDNKLIGTGKGHSKKEAEQLAAKDALEK 229 >gi|228992577|ref|ZP_04152504.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442] gi|228998625|ref|ZP_04158212.1| Ribonuclease 3 [Bacillus mycoides Rock3-17] gi|229006125|ref|ZP_04163813.1| Ribonuclease 3 [Bacillus mycoides Rock1-4] gi|228755201|gb|EEM04558.1| Ribonuclease 3 [Bacillus mycoides Rock1-4] gi|228761093|gb|EEM10052.1| Ribonuclease 3 [Bacillus mycoides Rock3-17] gi|228767211|gb|EEM15847.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442] Length = 245 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 110/224 (49%), Gaps = 5/224 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKMFQQKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL + + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAVVCEPSLVRFANELSFGNLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H+ F V ++G+A G SK+ AEQ AA+E LK+ Sbjct: 199 KGPAHNREFVSRVTLNGVALGLGSGKSKKEAEQQAASEALKKLK 242 >gi|152993835|ref|YP_001359556.1| ribonuclease III [Sulfurovum sp. NBC37-1] gi|189043369|sp|A6QCJ0|RNC_SULNB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|151425696|dbj|BAF73199.1| ribonuclease III [Sulfurovum sp. NBC37-1] Length = 223 Score = 162 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 117/226 (51%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ YS LEKR+ Y F ++ L+ +ALTH S Y + ERLEFLGD +L L++ LF Sbjct: 1 MN--DYSQLEKRLNYTFKDKQLIIEALTHKSYKKPY--NNERLEFLGDAVLDLIVGEYLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + EG LS SLV+ + +AR++DL S+I +S + S+ ++ E Sbjct: 57 KKFPKSDEGILSKIRASLVNESGFTLLARKIDLGSYIYLSLAEENNNGRDKPSLLSNAFE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YL+ G++ A K ++ K +D KT LQE A VTP Y++ Sbjct: 117 AIIGAVYLEAGLDTAKEISIKLLEECHPKIDLQSLSKDYKTALQELTQATHAVTPGYEML 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGPDH F + V + A SK+ A+Q AA L+ Sbjct: 177 GSSGPDHKKEFEIAVTLDNKTIATAKGKSKKDAQQKAAKIALEALK 222 >gi|291165574|gb|EFE27623.1| ribonuclease III [Filifactor alocis ATCC 35896] Length = 229 Score = 162 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 119/227 (52%), Gaps = 8/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M +K+IGY F + LL +ALTH+S + + ERLEFLGD ILG+++S Sbjct: 1 MKE--LKEFQKKIGYTFQDEKLLREALTHTSYINENRNKNLRPNERLEFLGDSILGVVVS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 T LF EGELS S+V ++ VA+ LD S+I + SI A Sbjct: 59 TYLFEKRKDLPEGELSKIRASIVCEDSLQLVAKRLDAGSYIYMGKGEEMTGGRTRHSILA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPE 174 D+VE+LIAA+YLDGG++ A F+ + + ++ K +D KT LQE K + E Sbjct: 119 DMVEALIAAIYLDGGMKAASKFIFLFMEDVMKRATKGDMDKDYKTRLQEIVQQKPDRSIE 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y+V GPDH F V + + A G SK+ AE+ AA + L+ Sbjct: 179 YRVIGEKGPDHRKIFVVELLVDKKQVAVGEGYSKKEAEKQAAKKALQ 225 >gi|58698421|ref|ZP_00373332.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae] gi|58535076|gb|EAL59164.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae] Length = 232 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 125/227 (55%), Gaps = 5/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56 M +L + K I Y F N ++LE+ALTH S++ ++ YERLEFLGD +L +++S Sbjct: 1 MKSLN-DAISKIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F KEG L+ R LV T + VA+E+ L SFI +++ R + Sbjct: 60 ATLFKLFPEEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCNGGRCNLKNLE 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + +E+LI A+Y+DGG+E F+ +YW++ A +D KT LQEW PEY+ Sbjct: 120 NSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQKNKLPLPEYE 179 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + ++GP H+P FT+ V I SK+ AEQ AA +L++ Sbjct: 180 LVKQTGPAHNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKI 226 >gi|313673188|ref|YP_004051299.1| rnase iii [Calditerrivibrio nitroreducens DSM 19672] gi|312939944|gb|ADR19136.1| RNAse III [Calditerrivibrio nitroreducens DSM 19672] Length = 229 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 113/220 (51%), Gaps = 4/220 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + L + + Y F N+ LL +ALTHSS S+ + +YERLEFLGD +L L++S L Sbjct: 1 MNLEKLNEILNYNFENKELLIEALTHSSYSYENKLCRNYERLEFLGDAVLQLIVSEYLIF 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG LS VS E S++A+++DL +FIR+ SI D+ ES Sbjct: 61 KYKDFDEGMLSRYRAYFVSEEFISELAKQIDLGNFIRLGKGELNSGGKDRPSILCDIFES 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++AA+YLDGG A F+ + D K+ELQ+ F P+YKV Sbjct: 121 IVAAMYLDGGYNEARRFIITIASDKIDEVIQQNIFTDYKSELQKLTQKIFESLPDYKVKD 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +GP+HD F V + I+ G SK+ AEQ AA + Sbjct: 181 ETGPEHDKTFIVDLYINDRYYCSGSGKSKKKAEQDAAKKA 220 >gi|319957798|ref|YP_004169061.1| rnase iii [Nitratifractor salsuginis DSM 16511] gi|319420202|gb|ADV47312.1| RNAse III [Nitratifractor salsuginis DSM 16511] Length = 226 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 4/221 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y LE+R+GY F N L+ +ALTH S Y + ERLEFLGD +L L++ LF+ F Sbjct: 3 NYHELERRLGYEFKNPQLIVEALTHKSYKKPY--NNERLEFLGDAVLDLIVGEFLFHKFP 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG LS SLV+ + +AR +DL +I +S + S+ ++ E++I Sbjct: 61 QSDEGVLSKIRASLVNESGFATLARAIDLGRYIYLSPAEENNQGRSKPSLLSNAFEAVIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL+ G+E A + V + + + +D KT LQE A GVTP+Y++ SG Sbjct: 121 AIYLEAGLENARSIVVRLLDETYPRIDLDTLCKDYKTALQELTQATHGVTPDYEMIGSSG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH F V V++ G A SK+AA+Q AA L++ Sbjct: 181 PDHRKEFEVAVKLDGETIASAKGRSKKAAQQKAAEIALQKL 221 >gi|212639596|ref|YP_002316116.1| ribonuclease III [Anoxybacillus flavithermus WK1] gi|226735364|sp|B7GGE9|RNC_ANOFW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|212561076|gb|ACJ34131.1| DsRNA-specific ribonuclease [Anoxybacillus flavithermus WK1] Length = 238 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 106/233 (45%), Gaps = 9/233 (3%) Query: 1 MSA----LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILG 52 MS +++ +++ G F N LL +A THSS + ++ E ERLEFLGD +L Sbjct: 1 MSKQRPYVKFKQFQEQTGIFFRNEKLLIQAFTHSSYVNEHRKRLHEDNERLEFLGDAVLE 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L +S LF F EGEL+ ++V + A L + + Sbjct: 61 LTVSQYLFEQFPQMSEGELTKMRAAIVCEPSLVTFAHALSFGDLVLLGKGEELTGGRMRP 120 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGV 171 S+ ADV E+ I ALYLD GIE F+ K + + D K++LQE+ Sbjct: 121 SLLADVFEAFIGALYLDQGIEAVVQFLGKTIFPKIREGAFSHVMDYKSQLQEFVQRDGSG 180 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 EYK+ GP H+ F V ++G G+ SK+ AEQ AA L + Sbjct: 181 VLEYKILQERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAAQMALAKLK 233 >gi|23098981|ref|NP_692447.1| ribonuclease III [Oceanobacillus iheyensis HTE831] gi|38372423|sp|Q8ER05|RNC_OCEIH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|22777209|dbj|BAC13482.1| ribonuclease III [Oceanobacillus iheyensis HTE831] Length = 228 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 5/226 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 + LE+ +G +F ++LL++A THSS + +++ ERLEFLGD +L L +S L Sbjct: 1 MDIRPLEEHLGISFQQKALLKEAFTHSSYVNEHRKQRLSDNERLEFLGDAVLELAVSQYL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EGE++ ++V + A EL+ F+R+ ++ +I AD Sbjct: 61 YRNNKDMPEGEMTKLRAAIVCEPSLKNFAEELEFGKFLRLGKGEQQTGGRERPAILADAF 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+ + ALYLD G + F++ + + + D K++LQE+ EY++ Sbjct: 121 EAFLGALYLDQGFDNVLDFLNIHVFPKLTTGAFSHAMDYKSQLQEFVQQHKDQKIEYRII 180 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H+ F V I A G +K+ AEQ AA L Sbjct: 181 EEKGPSHNKEFVAEVVIQEKAAGIGTGRTKKEAEQRAAKNALDSIN 226 >gi|164688568|ref|ZP_02212596.1| hypothetical protein CLOBAR_02213 [Clostridium bartlettii DSM 16795] gi|164602981|gb|EDQ96446.1| hypothetical protein CLOBAR_02213 [Clostridium bartlettii DSM 16795] Length = 233 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLF 60 + E++I Y F N+ + +ALTHSS S+ + ERLEFLGD +L ++IS LF Sbjct: 8 SSNIELFEQKINYEFKNKEYILEALTHSSYSNENKNYPFNERLEFLGDSVLSIVISDYLF 67 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EGEL+ ++V E+ S+V++ + L ++ + SI AD +E Sbjct: 68 KKETKLPEGELTKIRANIVCEESLSEVSKNIHLGKYMLLGKGEEATGGRERISILADALE 127 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLDGGI+ A F+ ++ S K RD KT LQE + YK+ Sbjct: 128 AVIAAIYLDGGIKCAREFILTNMEKIINDSIKGKIFRDYKTCLQEVLQSNGENNIWYKLI 187 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH+ RF + V I+ G SK+ AEQVAA L + Sbjct: 188 EEKGPDHNKRFVMEVGINDTVLGVGEGKSKKDAEQVAAKCALDK 231 >gi|150390513|ref|YP_001320562.1| ribonuclease III [Alkaliphilus metalliredigens QYMF] gi|149950375|gb|ABR48903.1| Ribonuclease III [Alkaliphilus metalliredigens QYMF] Length = 239 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 116/223 (52%), Gaps = 6/223 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHF 63 E+ I Y F ++ LL++ALTHSS ++ + + ERLEFLGD +LG++IS +F + Sbjct: 13 DFEEMIQYQFKDKQLLKEALTHSSYANESKVKKIKHNERLEFLGDSVLGIIISDYIFKKY 72 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ ++V A +++L F+R+ SI AD E+LI Sbjct: 73 THLPEGDLTKVRANVVCEPALGSCATKINLGGFLRLGRGEEVSGGRQRESILADAFEALI 132 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181 ALYLDGG+ +A TFV + ++ K RD KT LQE +K Y+V S Sbjct: 133 GALYLDGGMVIAQTFVLNHLIDSVEQATKGSLFRDYKTYLQELLQSKHSERITYQVIKES 192 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F V V + GM SK+ AEQ AA E +++ Sbjct: 193 GPDHSKIFDVEVLLGEQLLGHGMGKSKKEAEQRAAKEAVEKIK 235 >gi|319789592|ref|YP_004151225.1| ribonuclease III [Thermovibrio ammonificans HB-1] gi|317114094|gb|ADU96584.1| ribonuclease III [Thermovibrio ammonificans HB-1] Length = 236 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 6/227 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH 62 + LE+ +GY+F ++ LL++AL H S + E+YE LEFLGD ++GL++S L Sbjct: 6 KLVALERLLGYSFKDKELLKRALIHRSFAFEKDTGENYEVLEFLGDAVIGLIVSEELIKR 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGELS LVS + S++AR ++L F+ + ++ SI DV ES+ Sbjct: 66 FPEKSEGELSQIRAFLVSEPSLSKLARTINLGQFLYLGKGEKRTGGREKDSILCDVFESV 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTF 179 ALYLD G E A + ++ + + +D K+ LQE ++ V P+Y+V Sbjct: 126 FGALYLDAGFEKAKEIFKNKFLKKLWEILENAVTYKDFKSYLQEITQREYKVLPKYRVVK 185 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GP+HD FTV +++ + G SK+AAEQ AA E+LK G+ Sbjct: 186 AEGPEHDKTFTVECQVNDIT-TYGKGKSKKAAEQDAAREMLKALGVI 231 >gi|282892110|ref|ZP_06300585.1| hypothetical protein pah_c207o041 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498005|gb|EFB40349.1| hypothetical protein pah_c207o041 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 236 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 83/234 (35%), Positives = 118/234 (50%), Gaps = 9/234 (3%) Query: 1 MSALRY-----STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILG 52 M AL S +E R+GY F +R LL A H S + +E ERLEFLGD +LG Sbjct: 1 MKALDLLAQNISNIELRLGYKFQDRDLLALAFVHRSFINENREIHEHNERLEFLGDSVLG 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 LLI+ L+ + S EGELS + LV A +C +LDL F+ + R + Sbjct: 61 LLIADYLYRYLPSTPEGELSYLKSRLVEASSCVTYIHKLDLEQFLLLGRGERMNDGRGRE 120 Query: 113 SIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 SI AD++E++I A+YLDGG+E A + + R+ K LQ++ K+ Sbjct: 121 SILADLLEAIIGAVYLDGGLESAKAFLFKNFSTEIEAILKTPVRNWKALLQDYCQKKYQT 180 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 TP Y V GPDH F + V ++ +G SK+ A+Q AA + L + I Sbjct: 181 TPSYHVIDEKGPDHSKTFKISVFLNDEEVGKGEGGSKKEAQQKAAEDALSKMDI 234 >gi|118587961|ref|ZP_01545371.1| Ribonuclease III [Stappia aggregata IAM 12614] gi|118439583|gb|EAV46214.1| Ribonuclease III [Stappia aggregata IAM 12614] Length = 236 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 108/224 (48%), Positives = 143/224 (63%), Gaps = 3/224 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH 62 S L+ + Y F + LL ALTH+S S + SY+RLEFLGDR+LGL+I+++L H Sbjct: 11 ISALKNALQYEFRDLELLRVALTHASALPPSETVAGSYQRLEFLGDRVLGLVIASMLHKH 70 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A EGEL+ RFN +V ETC+++A+EL + +R+ + T++ AD+ ES+ Sbjct: 71 FPRADEGELARRFNHMVKRETCAEIAQELGVGDAMRIGLAEAQTGGRKKTALLADICESV 130 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLDGG E A +F+ + W+ R L RDAKT LQEWA +K TP Y VT R G Sbjct: 131 IAAIYLDGGFEAAESFITRLWEPRMLSWSGPLRDAKTTLQEWAQSKSLPTPRYDVTSRDG 190 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 PDH P FTV V + GL P +G SKR AEQ AA VL+REG+W Sbjct: 191 PDHAPNFTVSVTVQGLPPGEGKGGSKRIAEQNAAEAVLRREGVW 234 >gi|116628032|ref|YP_820651.1| ribonuclease III [Streptococcus thermophilus LMD-9] gi|122267372|sp|Q03K17|RNC_STRTD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116101309|gb|ABJ66455.1| RNAse III [Streptococcus thermophilus LMD-9] gi|312278628|gb|ADQ63285.1| Ribonuclease 3 [Streptococcus thermophilus ND03] Length = 229 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 112/229 (48%), Gaps = 6/229 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ L LE+ G F+ + LLE A TH+S ++ ++ ERLEFLGD L L+IS Sbjct: 1 MNQLE-QKLEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+N + + EGE+S +++V E+ + + +IR+ K +I Sbjct: 60 VYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD G+ F+++ + K + D KT LQE V Y Sbjct: 120 DLWEAFLGALYLDQGLPAVEKFLNQVMIPQVEKGNFDRVIDYKTALQERLQVNGKVDITY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V SGP H FT+ V + G + G SK+ AEQ AA L++ G Sbjct: 180 TVIDESGPAHAKEFTMQVAVDGKELSTGFGKSKKLAEQAAAKSALEQLG 228 >gi|158320491|ref|YP_001512998.1| ribonuclease III [Alkaliphilus oremlandii OhILAs] gi|158140690|gb|ABW19002.1| Ribonuclease III [Alkaliphilus oremlandii OhILAs] Length = 241 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M ++ +K IGY F N S++ +ALTHSS ++ Y++ + ERLEFLGD +LG+++S Sbjct: 8 MEQIK--EFQKIIGYQFKNLSIINEALTHSSYTNEYRKKQVQNNERLEFLGDSVLGIVVS 65 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ + EGEL+ ++V + A+E+ L ++ + SI A Sbjct: 66 EYIYLKYKDLPEGELTKIRANVVCEPSLGNQAKEIKLGQYLLLGKGEEATGGRDRVSILA 125 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPE 174 D E++I ALYLDGGI VAG F+ + G RD KT+LQE +K+ Sbjct: 126 DAFEAVIGALYLDGGIAVAGKFILDMLTRSIELAIEGNLFRDYKTDLQEILQSKYDEKIS 185 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV GPDH+ F V + + + G SK+ AEQ AA LK+ Sbjct: 186 YKVVSEVGPDHNKTFEVEILLGEKSLGMGEGKSKKEAEQRAAKSALKK 233 >gi|319407031|emb|CBI80668.1| ribonuclease III [Bartonella sp. 1-1C] Length = 227 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 112/226 (49%), Positives = 146/226 (64%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LEK G++F + L++ALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 1 MEHQIIDQLEKLTGHSFKDADRLKRALTHSSVQSSEQGNYERLEFLGDRVLGLLIAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +A E+ L + V +++ + +I ADV+E Sbjct: 61 QIFPQASEGELSVRLNGLVNAQTCADIALEMGLPDMVHVGCEMKNLEGRRLVNIYADVIE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG+E + +YW RA K RRD+KTELQEWAH + P Y+V R Sbjct: 121 ALIAVIYLDGGLESVRPVIQRYWHDRAKKMNAGRRDSKTELQEWAHTQDSAQPHYQVVQR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDHDP F V V I G AP G SKR AE+ AA +L+REGIW Sbjct: 181 YGPDHDPVFMVEVSICGYAPEIGRGSSKRQAERDAAERILRREGIW 226 >gi|319405458|emb|CBI79077.1| ribonuclease III [Bartonella sp. AR 15-3] Length = 235 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 110/226 (48%), Positives = 147/226 (65%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LEK G++F + L++ALTH+S+ S +YERLEFLGDR+LGLLI+ +L+ Sbjct: 1 MKYHVIDQLEKLTGHSFKDVDRLKRALTHASVQSSENGNYERLEFLGDRVLGLLIAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +A E+ L+ + V +++ + ++ ADV+E Sbjct: 61 KIFPQASEGELSVRLNGLVNAQTCADIALEMGLSDMVHVGCEMKNLEGRRLANVYADVIE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG+E + +YW+ RA K RRDAKTELQEWAH + P Y+V R Sbjct: 121 ALIAVIYLDGGLESVRPVIQRYWQDRAKKMNAGRRDAKTELQEWAHTQDNAQPHYQVVQR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDHDP F V V I G AP G SKR AE+ AA +L+REGIW Sbjct: 181 YGPDHDPIFIVEVSICGYAPEIGRGSSKRQAERDAAERILRREGIW 226 >gi|307946585|ref|ZP_07661920.1| ribonuclease III [Roseibium sp. TrichSKD4] gi|307770249|gb|EFO29475.1| ribonuclease III [Roseibium sp. TrichSKD4] Length = 235 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 103/224 (45%), Positives = 143/224 (63%), Gaps = 3/224 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH 62 L +R+ Y F + L+ KALTH+S +SY+RLEFLGDR+LGL+++T+L + Sbjct: 10 LRQLSERLHYTFKDEKLIRKALTHASALEPGEGDDQSYQRLEFLGDRVLGLVVATMLHKN 69 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A EGEL+ RFN +V ETC+++A+EL+L +R+ + T++ AD+ E++ Sbjct: 70 FPKADEGELARRFNHMVKRETCAEIAQELNLGDAMRIGHSEAQTGGRKKTALLADICEAV 129 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLDGG + A F+ ++WK+R L RDAKT LQEWA +K TP Y+V R G Sbjct: 130 IAAIYLDGGFDAATAFIQRFWKKRMLSWTGPLRDAKTTLQEWAQSKSLPTPFYEVISRDG 189 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 PDH P F V V + GL +G SKR AEQ AA VL+REG+W Sbjct: 190 PDHAPIFVVAVAVKGLENGEGKGGSKRLAEQNAAEAVLRREGVW 233 >gi|187933552|ref|YP_001885438.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B] gi|238691613|sp|B2TJ22|RNC_CLOBB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|187721705|gb|ACD22926.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B] Length = 232 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 123/227 (54%), Gaps = 4/227 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58 M+ +++ +E R+G F N SL++ ALTHSS + +++ ERLEFLGD +L L I+ Sbjct: 1 MNRYKFNDIENRLGVYFNNPSLIKTALTHSSFGNQFKDAKYNERLEFLGDSVLQLCITEY 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LFN F EGEL+ + +V + ++A++L L +IR+S SIQAD Sbjct: 61 LFNKFKDKSEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMSKGEELTGGRERMSIQADA 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYK 176 VE++IAA+YLD GI F+ ++++ + + D KT+LQE + +Y+ Sbjct: 121 VEAVIAAVYLDKGIGFVNDFILLHFEEMINKAINNEIVLDFKTKLQELLQKDGEILIQYE 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GP H +F V I+ G SK+ AEQ AA E LKR Sbjct: 181 LVKYEGPPHRRKFFTNVIINEKVMGIGEGYSKKEAEQNAAKEALKRL 227 >gi|319404018|emb|CBI77606.1| ribonuclease III [Bartonella rochalimae ATCC BAA-1498] Length = 227 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 113/226 (50%), Positives = 146/226 (64%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LEK G++F + L++ALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 1 MEHQIIDQLEKLTGHSFKDADRLKRALTHSSVQSSEQGNYERLEFLGDRVLGLLIAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +A E+ L + V +++ + +I ADV+E Sbjct: 61 QIFPQASEGELSVRLNGLVNAQTCADIALEMGLPDMVHVGCEMKNLEGRRLVNIYADVIE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG+E + +YW RA K RRDAKTELQEWAH + P Y+V R Sbjct: 121 ALIAVIYLDGGLESVRPVIQRYWHDRAQKMNAGRRDAKTELQEWAHTQDSAQPYYQVVQR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDHDP F V V I G AP G SKR AE+ AA +L+REGIW Sbjct: 181 YGPDHDPVFMVEVSICGYAPEIGRGSSKRQAERDAAERILRREGIW 226 >gi|307245400|ref|ZP_07527488.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853741|gb|EFM85958.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 243 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++GY F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 18 MNNMQLERLQKKLGYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 75 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 135 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240 >gi|307256562|ref|ZP_07538343.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864972|gb|EFM96874.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 243 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++GY F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 18 MNNMQLERLQKKLGYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 75 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 135 AIIAAIYLDAGMDKAIAQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240 >gi|169342696|ref|ZP_02863737.1| ribonuclease III [Clostridium perfringens C str. JGS1495] gi|169299202|gb|EDS81272.1| ribonuclease III [Clostridium perfringens C str. JGS1495] Length = 237 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 121/228 (53%), Gaps = 4/228 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58 M + +EK IG F N+ +L ALTHSS ++ +++ ERLEFLGD +L L ++ Sbjct: 1 MKDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKY 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LFN++ EGEL+ +V + +V++ L L +IR+S TSIQAD Sbjct: 61 LFNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADA 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYK 176 +E++IAA+YLD GIEVA F+ + +K + + D KT LQE V Y Sbjct: 121 LEAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYN 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + GP H +F + I+ QG+ SK+ +EQ AA L+R G Sbjct: 181 LVKHEGPPHRRKFFTDLLINNEVMGQGVGFSKKESEQNAAKAALQRLG 228 >gi|188589361|ref|YP_001920585.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43] gi|251778911|ref|ZP_04821831.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|238689672|sp|B2V4D6|RNC_CLOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|188499642|gb|ACD52778.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43] gi|243083226|gb|EES49116.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 232 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 123/227 (54%), Gaps = 4/227 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58 M+ +++ +E R+G F N SL++ ALTHSS + +++ ERLEFLGD +L L I+ Sbjct: 1 MNRYKFNDIENRLGVYFNNPSLIKTALTHSSFGNQFKDAKYNERLEFLGDSVLQLCITEY 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LFN F EGEL+ + +V + ++A++L L +IR+S SIQAD Sbjct: 61 LFNKFKDKSEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMSKGEELTGGRERMSIQADA 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYK 176 VE++IAA+YLD GI F+ ++++ + + D KT+LQE + +Y+ Sbjct: 121 VEAVIAAVYLDKGIGFVNDFILLHFEEMINKAINNEIVLDFKTKLQELLQKDGEILIQYE 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GP H +F V I+ G SK+ AEQ AA E LKR Sbjct: 181 LLKYEGPPHRRKFFTNVIINEKVMGIGEGYSKKEAEQNAAKEALKRL 227 >gi|309389054|gb|ADO76934.1| RNAse III [Halanaerobium praevalens DSM 2228] Length = 237 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 113/228 (49%), Gaps = 6/228 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57 + + EK + F N+ LLE+ALTH S + + + ERLEFLGD +L L IST Sbjct: 6 NKRKTLKFEKSLDLNFNNKFLLERALTHKSYPNENRHLNLKDNERLEFLGDSVLSLSIST 65 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +FN F EG+L+ +VSA ++ A+ ++L ++ + SI AD Sbjct: 66 YIFNKFSDFPEGDLAKMRAVIVSAPILAEAAKRINLGQYLFLGKGEEMTGGRERDSILAD 125 Query: 118 VVESLIAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 +E++ ALYLD +V F+ + + +G +D KT LQE PEY Sbjct: 126 TMEAIFGALYLDQSFKVVSDFILELLKVDIINVAAGNHIQDYKTMLQEVIQDMGNFRPEY 185 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V GPDH+ F V V+++ + G SK+ AEQ AA L + Sbjct: 186 EVIDEEGPDHNKTFIVAVKMNEESLGSGQGSSKKEAEQEAAKVALDKL 233 >gi|240850197|ref|YP_002971590.1| ribonuclease III [Bartonella grahamii as4aup] gi|240267320|gb|ACS50908.1| ribonuclease III [Bartonella grahamii as4aup] Length = 235 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 119/226 (52%), Positives = 151/226 (66%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L L K G+ F + L+KALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 1 MKRLMIDQLFKLTGHRFKDEERLKKALTHSSVQDSEQGNYERLEFLGDRVLGLLIAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +ARE+ L IRV +++ + ++ ADVVE Sbjct: 61 QLFPQASEGELSVRLNHLVNAQTCADIAREMRLPDMIRVGFEMKNFEGRRLINMHADVVE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG+E F+ KYW RA K RRDAKTELQEWAH + P Y+V R Sbjct: 121 ALIAVIYLDGGLESVRPFIQKYWHSRAKKMDAGRRDAKTELQEWAHIQGNAQPHYQVIKR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDP F V V ISG A G SKR AE++AA ++L+REG+W Sbjct: 181 SGPDHDPVFMVEVSISGFASEIGQGSSKRYAERMAAEKILRREGVW 226 >gi|149183216|ref|ZP_01861662.1| ribonuclease III [Bacillus sp. SG-1] gi|148849081|gb|EDL63285.1| ribonuclease III [Bacillus sp. SG-1] Length = 249 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 5/225 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ +++ F N LL +A THSS + ++ E ERLEFLGD +L L +S L+ Sbjct: 19 KFKEFQRKHNIKFNNEKLLRQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTVSQFLY 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EGEL+ ++V + A EL + + ++ ADV E Sbjct: 79 KKYPTMSEGELTKLRAAIVCEPSLVTFANELKFGELVLLGKGEELTGGRERPALLADVFE 138 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G+E + +++ + D K++LQE T EY + Sbjct: 139 AFIGALYLDQGLEPVLSILEENVYPKINSGAFSHVMDFKSQLQELVQRDSAGTIEYGILQ 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H+ F V ++G G SK+ AEQ AA L++ Sbjct: 199 EKGPAHNREFVSRVCLNGEELGIGTGRSKKEAEQHAAQMALEKLK 243 >gi|55821300|ref|YP_139742.1| ribonuclease III [Streptococcus thermophilus LMG 18311] gi|55823213|ref|YP_141654.1| ribonuclease III [Streptococcus thermophilus CNRZ1066] gi|81559233|sp|Q5LZ68|RNC_STRT1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|81560422|sp|Q5M3S3|RNC_STRT2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|55737285|gb|AAV60927.1| ribonuclease III [Streptococcus thermophilus LMG 18311] gi|55739198|gb|AAV62839.1| ribonuclease III [Streptococcus thermophilus CNRZ1066] Length = 237 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 113/229 (49%), Gaps = 6/229 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ L LE+ G F+ + LLE A TH+S ++ ++ ERLEFLGD L L+IS Sbjct: 9 MNQLE-QKLEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 67 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+N + + EGE+S +++V E+ + + +IR+ K +I Sbjct: 68 VYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILG 127 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD G+ F+++ + K + D KT LQE V Y Sbjct: 128 DLWEAFLGALYLDQGLPAVEKFLNQVMIPQVEKGNFDRVIDYKTALQERLQVNGKVDITY 187 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V SGP H FT+ V + G + G+ SK+ AEQ AA L++ G Sbjct: 188 TVIDESGPAHAKEFTMQVAVDGKELSTGLGKSKKLAEQAAAKSALEQLG 236 >gi|315122353|ref|YP_004062842.1| ribonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495755|gb|ADR52354.1| ribonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 232 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 169/225 (75%), Positives = 200/225 (88%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 +L+ S LE+RIGY F+N+ LL+KALTHSSI HS QE+YERLEFLGDR+LG+LIS LLF++ Sbjct: 8 SLKLSALERRIGYTFSNKYLLKKALTHSSICHSPQENYERLEFLGDRVLGILISKLLFDY 67 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 FDSAKEGELS+RFNSLVSAETCSQVA+EL+L SFI VSSDLR +VC F+ IQADVVESL Sbjct: 68 FDSAKEGELSIRFNSLVSAETCSQVAKELELDSFIYVSSDLRMEVCKFVKGIQADVVESL 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAALYLDGGIE A +FV KYWK+R LK+G+FRRDAKTELQEWAHAKF VTP YK+ RSG Sbjct: 128 IAALYLDGGIESASSFVTKYWKKRVLKNGEFRRDAKTELQEWAHAKFRVTPTYKIMLRSG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 PDHDPRFTV+V++ GL +G+DCSKR+AEQ+AAAE+L+REGIW+ Sbjct: 188 PDHDPRFTVMVDVLGLYSGKGIDCSKRSAEQMAAAEILRREGIWS 232 >gi|331082011|ref|ZP_08331139.1| ribonuclease III [Lachnospiraceae bacterium 6_1_63FAA] gi|330405606|gb|EGG85136.1| ribonuclease III [Lachnospiraceae bacterium 6_1_63FAA] Length = 236 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIST 57 ++ ++ LEK+IGY F N LL ALTHSS ++ + +E+ ERLEFLGD +L L S Sbjct: 3 NSKKFLELEKKIGYEFENFDLLVNALTHSSYANEHHIAYKENNERLEFLGDAVLELTSSE 62 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + EG+L+ + S+V T + A+E+ L ++ + SI +D Sbjct: 63 FLFYQYADLPEGKLTKKRASIVCEPTLALCAKEISLGDYLLLGKGEEATGGRNRNSIISD 122 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+YLDGG A FV KY + D+KT LQE A++ +Y + Sbjct: 123 AMEALIGAIYLDGGFANAKEFVHKYILNDIENK-QLFYDSKTTLQEIVQAQYEDDVKYVL 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH+ F V + +G +K+AAEQ AA +K+ Sbjct: 182 VKEEGPDHNKSFYVEALLGDKKLGEGCGHTKKAAEQQAAYCAIKKL 227 >gi|18310700|ref|NP_562634.1| ribonuclease III [Clostridium perfringens str. 13] gi|168210649|ref|ZP_02636274.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626] gi|168214195|ref|ZP_02639820.1| ribonuclease III [Clostridium perfringens CPE str. F4969] gi|168217005|ref|ZP_02642630.1| ribonuclease III [Clostridium perfringens NCTC 8239] gi|182625857|ref|ZP_02953623.1| ribonuclease III [Clostridium perfringens D str. JGS1721] gi|22654058|sp|Q8XJN8|RNC_CLOPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|18145381|dbj|BAB81424.1| ribonuclease III [Clostridium perfringens str. 13] gi|170711273|gb|EDT23455.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626] gi|170714262|gb|EDT26444.1| ribonuclease III [Clostridium perfringens CPE str. F4969] gi|177908891|gb|EDT71383.1| ribonuclease III [Clostridium perfringens D str. JGS1721] gi|182380899|gb|EDT78378.1| ribonuclease III [Clostridium perfringens NCTC 8239] Length = 237 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 121/228 (53%), Gaps = 4/228 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58 M + +EK IG F N+ +L ALTHSS ++ +++ ERLEFLGD +L L ++ Sbjct: 1 MKDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKY 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LFN++ EGEL+ +V + +V++ L L +IR+S TSIQAD Sbjct: 61 LFNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADA 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYK 176 +E++IAA+YLD GIEVA F+ + +K + + D KT LQE V Y Sbjct: 121 LEAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYN 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + GP H +F + I+ QG+ SK+ +EQ AA L+R G Sbjct: 181 LVKHEGPPHRRKFFTDLLINNEIMGQGVGFSKKESEQNAAKAALQRLG 228 >gi|167745647|ref|ZP_02417774.1| hypothetical protein ANACAC_00339 [Anaerostipes caccae DSM 14662] gi|317472750|ref|ZP_07932063.1| ribonuclease III [Anaerostipes sp. 3_2_56FAA] gi|167654959|gb|EDR99088.1| hypothetical protein ANACAC_00339 [Anaerostipes caccae DSM 14662] gi|316899776|gb|EFV21777.1| ribonuclease III [Anaerostipes sp. 3_2_56FAA] Length = 231 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 117/231 (50%), Gaps = 6/231 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ +K+I F ++ LL ALTHSS ++ + + ERLEFLGD +L L++S Sbjct: 1 MNQSNQEDFQKKIKIRFHDKKLLTTALTHSSYANERKLSRGKDNERLEFLGDAVLELIMS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF+ + EG+L+ SLV T + A++L L ++ +S SI + Sbjct: 61 DYLFHTYKDEPEGKLTKMRASLVCEPTLAFCAKDLSLGDYLLLSKGEDLTGGRERDSILS 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E++I A+YLD G E A FV+ Y Q + F DAKT LQE + Y+ Sbjct: 121 DAFEAVIGAVYLDQGFEEARKFVETYLLQDVDEKVLFY-DAKTSLQELVQSFSKQPLTYE 179 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK-REGIW 226 + GPDH FTV + G SK++AEQ AA E +K ++GI Sbjct: 180 LIKEDGPDHQKTFTVEARLGEKVIGTGTGRSKKSAEQTAAYEAMKHKDGIL 230 >gi|121602768|ref|YP_988789.1| ribonuclease III [Bartonella bacilliformis KC583] gi|189043293|sp|A1US36|RNC_BARBK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|120614945|gb|ABM45546.1| ribonuclease III [Bartonella bacilliformis KC583] Length = 235 Score = 158 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 112/226 (49%), Positives = 151/226 (66%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L+K G++F N LL+KALTHSS+ S Q +YERLEFLGDR+LGLL++ +L+ Sbjct: 1 MKHQTIDQLKKLTGHSFKNEDLLKKALTHSSVQRSEQGNYERLEFLGDRVLGLLVAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +ARE+ L + V +++ + ++ ADVVE Sbjct: 61 QFFPQASEGELSVRLNGLVNAQTCADIAREIGLPDMVHVGCEMKNLEGRRLANMHADVVE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG++ F+ +YW+ RA K RRDAKTELQEWAH + GV P+Y+V R Sbjct: 121 ALIAVIYLDGGLKSVRPFIQRYWQDRAKKIDASRRDAKTELQEWAHTQNGVQPQYRVIKR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 G DHDP F V V + G G SKR AE+ AA ++L+REG+W Sbjct: 181 CGLDHDPVFVVEVSVPGFVSEVGEGGSKRHAERAAAEKILRREGMW 226 >gi|206603814|gb|EDZ40294.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG'] Length = 247 Score = 158 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 8/231 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLL 54 M R S LE +GY F LLE+A TH S + + + ERLEFLGD +LGL+ Sbjct: 1 MKPHRELSELEDLLGYRFRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLV 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 I+ L + EG LS +VS T + V+R L + F+ + +S+ Sbjct: 61 IAEYLMVTYPKYPEGVLSKFKGRIVSEPTLASVSRVLGIGGFLLIGKGEELTQGREKSSL 120 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVT 172 AD +E++IAA+YLD G++ A TF+ +++ + +D KT+LQE+ + Sbjct: 121 LADAMEAVIAAIYLDSGLDAARTFIIGHFRSVIEQTVQEDSIQDYKTDLQEYCQRELETL 180 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P Y+V + GPDH F V V I G +G SK+ AEQ AA + L R Sbjct: 181 PVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGRSKKEAEQKAAKDALSRL 231 >gi|124515064|gb|EAY56575.1| ribonuclease III [Leptospirillum rubarum] Length = 247 Score = 158 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLL 59 S LE R+ Y F LLE+A TH S + + + ERLEFLGD +LGL+++ L Sbjct: 6 DLSELEDRLRYRFRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLVVAEYL 65 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG LS +VS T + V+R L + F+ + +S+ AD + Sbjct: 66 MVTYPKYPEGILSKFKGRVVSEPTLASVSRALGIGGFLLIGKGEELTQGREKSSLLADAM 125 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++IAA+YLD G++ A TF+ +++ + +D KT+LQE+ + P Y+V Sbjct: 126 EAVIAAIYLDSGLDAARTFIIGHFRSVIEQTVHEDSIQDYKTDLQEYCQRELETLPVYQV 185 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GPDH F V V I G +G SK+ AEQ AA + L R Sbjct: 186 MDQRGPDHQKEFDVAVLIRGKIYGEGSGKSKKEAEQKAAKDALSRL 231 >gi|163867992|ref|YP_001609196.1| ribonuclease III [Bartonella tribocorum CIP 105476] gi|189043294|sp|A9IRN0|RNC_BART1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|161017643|emb|CAK01201.1| ribonuclease III [Bartonella tribocorum CIP 105476] Length = 235 Score = 157 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 117/226 (51%), Positives = 152/226 (67%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L L K G+ F + L++ALTH+S+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 1 MRRLMIDQLFKLTGHRFKDEEKLKRALTHASVQDSEQGNYERLEFLGDRVLGLLIAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +ARE+ L I+V ++R + ++ ADVVE Sbjct: 61 QLFPQASEGELSVRLNHLVNAQTCADIAREMRLPDMIQVGFEMRNFEGRRLINMHADVVE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG+E F+ KYW+ RA K RRDAKTELQEWAH + P Y+V R Sbjct: 121 ALIAVMYLDGGLESVRPFIQKYWQSRAKKMDAGRRDAKTELQEWAHIQGDAQPHYQVIKR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDP F V V ISG A G SKR AE++AA ++L+REG+W Sbjct: 181 SGPDHDPVFMVEVSISGFASEIGQGSSKRNAERMAAEKILRREGVW 226 >gi|304316939|ref|YP_003852084.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778441|gb|ADL69000.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 232 Score = 157 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 121/231 (52%), Gaps = 6/231 (2%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIS 56 M + +Y LEK IGY F N+ LL+ AL HSS ++ + S ERLEFLGD +L ++IS Sbjct: 1 METSEKYENLEKNIGYVFNNKKLLKNALAHSSWANESKNIGISNERLEFLGDSVLSIIIS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ +EG LS + +V + ++ ARE++L ++ + SI A Sbjct: 61 EYLYKSRSDLEEGYLSKYRSEIVCEPSLARCAREIELGKYLLMGKGEEMTGGRNRESILA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPE 174 D +E+LIAA+YLD ++ A V + + + + RD KT+LQE Sbjct: 121 DAMEALIAAIYLDSDLKTASDIVLRLFDEIIKEVLSGLIYRDYKTKLQEVTQKMGSEKII 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 YK+T GPDH+ F + V + +GM SK+ AEQ AA E L + G+ Sbjct: 181 YKLTDEYGPDHNKMFVIEVYVGENRLGRGMGRSKKEAEQYAAMEALSKMGL 231 >gi|89098685|ref|ZP_01171567.1| Rnc [Bacillus sp. NRRL B-14911] gi|89086647|gb|EAR65766.1| Rnc [Bacillus sp. NRRL B-14911] Length = 259 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 5/227 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 +++ +K+IG +F N LL++A THSS + ++ E ERLEFLGD +L L +S Sbjct: 17 EMQFREFQKKIGISFENEKLLKQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTVSQF 76 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + EGEL+ ++V + A EL+ + + ++ ADV Sbjct: 77 LYKKYPMMSEGELTKLRAAVVCEPSLVTFANELEFGKLVLLGKGEEMTGGRERPALLADV 136 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ I ALYL+ GI+ F+++ + D K++LQE EYK+ Sbjct: 137 FEAFIGALYLEKGIDTVIGFLEQTVFPKINSGAFSHVMDFKSQLQELVQRDGAGAIEYKI 196 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V +SG G SK+ AEQ AA L+ Sbjct: 197 LQEKGPAHSREFVSRVSLSGNELGTGTGRSKKEAEQHAAQMALEILK 243 >gi|229541120|ref|ZP_04430180.1| ribonuclease III [Bacillus coagulans 36D1] gi|229325540|gb|EEN91215.1| ribonuclease III [Bacillus coagulans 36D1] Length = 246 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 109/224 (48%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 ++ L++++G F + +LL++A THSS + + E ERLEFLGD +L L +S LF Sbjct: 15 KFGKLQEQLGIHFQDVNLLKQAFTHSSYVNEHPEKRRHDNERLEFLGDAVLELTVSHYLF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N F S EGE++ S+V + A EL +I + ++ ADV E Sbjct: 75 NRFPSMNEGEMTKLRASVVCEPSLVIFANELHFGEYILLGKGEEMTGGRTRPALLADVFE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G++ + ++K + + D K++LQE+ + EY + Sbjct: 135 AFIGALYLDKGLKAVVSLLEKVVFPKIDEGLFSSTADYKSKLQEYVQKRTSGVLEYTILD 194 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP HD F V ++ A G SK+ AEQ AA L Sbjct: 195 ERGPAHDKEFVSSVSLNNKALGTGKGRSKKEAEQQAAQTALSNL 238 >gi|303242104|ref|ZP_07328595.1| ribonuclease III [Acetivibrio cellulolyticus CD2] gi|302590398|gb|EFL60155.1| ribonuclease III [Acetivibrio cellulolyticus CD2] Length = 235 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 111/225 (49%), Gaps = 6/225 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 + EK I Y F ++ L ALTHSS ++ Y+ S ERLEFLGD +L ++IS ++ Sbjct: 10 NIESFEKIIKYEFKDKDNLVLALTHSSYANEYKSEKLISNERLEFLGDSVLSVVISENIY 69 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ EGE++ ++V + A L + ++ + TSI +D +E Sbjct: 70 KNYSHLSEGEMTKFRANVVCEASLENCANNLSIGQYLLLGKGEEITGGRTRTSILSDAME 129 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLDGG+E A +FV ++ S K D KT+LQE Y++ Sbjct: 130 ALIGAIYLDGGLESAKSFVLSQMEKFIDDSIKGEIFMDYKTQLQEIIQKNNDQKVTYEII 189 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH F V++ G +K+ AEQ+AA LK+ Sbjct: 190 DEKGPDHSKIFVSQVKLDDKVIGVGEGRTKKEAEQMAAKTSLKKI 234 >gi|331269661|ref|YP_004396153.1| ribonuclease III [Clostridium botulinum BKT015925] gi|329126211|gb|AEB76156.1| Ribonuclease III [Clostridium botulinum BKT015925] Length = 236 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 116/230 (50%), Gaps = 7/230 (3%) Query: 1 MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLI 55 M R + +E ++ F + +LL+ ALTHSS + + S ERLEFLGD IL L I Sbjct: 1 MKKNRENILNEVENKLNVKFNDINLLDTALTHSSFVNENKNIYSNERLEFLGDSILQLCI 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S LL+N ++ EG L+ + +V + +VA+E ++ +I +S TSI Sbjct: 61 SELLYNKYEQEPEGFLTKKRALIVCGNSLHEVAKEWNIGKYINMSKGEEMTGGRTRTSIL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTP 173 +D VE++IA++YLD G EVA F+ + + S + D KT+LQE Sbjct: 121 SDCVEAIIASIYLDQGYEVAKKFIIDNFNEIIQKANSDQIILDYKTKLQETIQKFGDYNI 180 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 EY++ GP H +F V I G SK+ AEQ AA E LK Sbjct: 181 EYRLVSFDGPPHRRKFITEVLIDSEVKGVGEGYSKKEAEQNAAKEALKGL 230 >gi|262037510|ref|ZP_06010969.1| ribonuclease III [Leptotrichia goodfellowii F0264] gi|261748440|gb|EEY35820.1| ribonuclease III [Leptotrichia goodfellowii F0264] Length = 238 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56 M L ++I Y F N S L++ALTH S S+ +++S E+LEFLGD +L L+ + Sbjct: 1 MKIKNVEELMEKIDYKFRNESYLKEALTHRSFSNEHEKSKNFDNEKLEFLGDAVLNLITT 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++N EGEL+ + ++S S +A E+ L ++ +S+ SI Sbjct: 61 EYIYNSGKGKNEGELAKLKSQIISEPVFSAIAAEIGLGDYLYLSNGEESSGGRKRKSILG 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPE 174 D E+LI A++LD A K+ + + D KT LQE +K+ PE Sbjct: 121 DAFEALIGAVFLDSDYYTAKNTALKFLPDKINNLEDIEGIIDYKTVLQEVFQSKYKKMPE 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y++ GPDH+ F + V+++ G SK+ AE+ AA E ++ Sbjct: 181 YEILDTKGPDHNKVFEISVKLNNKIIGIGRGKSKKEAEKRAAKEAIE 227 >gi|260588638|ref|ZP_05854551.1| ribonuclease III [Blautia hansenii DSM 20583] gi|260541113|gb|EEX21682.1| ribonuclease III [Blautia hansenii DSM 20583] Length = 263 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIST 57 ++ ++ LEK+IGY F N LL ALTHSS ++ + +E+ ERLEFLGD +L L S Sbjct: 30 NSKKFLELEKKIGYEFENFDLLVNALTHSSYANEHHIAYKENNERLEFLGDAVLELTSSE 89 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + EG+L+ + S+V T + A+E+ L ++ + SI +D Sbjct: 90 FLFYQYADLPEGKLTKKRASIVCEPTLALCAKEISLGDYLLLGKGEEATGGRNRNSIISD 149 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+YLDGG A FV KY + D+KT LQE A++ +Y + Sbjct: 150 AMEALIGAIYLDGGFANAKEFVHKYILNDIENK-QLFYDSKTTLQEIVQAQYEDDVKYVL 208 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH+ F V + +G +K+AAEQ AA +K+ Sbjct: 209 VKEEGPDHNKSFYVEALLGDKKLGEGCGHTKKAAEQQAAYCAIKKL 254 >gi|254503847|ref|ZP_05115998.1| ribonuclease III [Labrenzia alexandrii DFL-11] gi|222439918|gb|EEE46597.1| ribonuclease III [Labrenzia alexandrii DFL-11] Length = 235 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 103/233 (44%), Positives = 144/233 (61%), Gaps = 7/233 (3%) Query: 1 MSALR----YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGL 53 M+ + + L+ + Y F + LL +LTH+S + + SY+RLEFLGDR+LGL Sbjct: 1 MTKDKKQNPIAALKAALAYEFKDLELLRVSLTHASALDPADTVAGSYQRLEFLGDRVLGL 60 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +++++L +HF A EGEL+ RFN +V ETC+++A EL + +R+ + T+ Sbjct: 61 VVASMLHHHFPKADEGELARRFNHMVKRETCAEIASELGVGDAMRIGQAEAQTGGRKKTA 120 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 + AD+ E++IAA+YLDGG E A FV + W+ R L RDAKT LQEWA +K TP Sbjct: 121 LLADICEAIIAAIYLDGGFEAADEFVRRLWEPRMLSWTGPLRDAKTTLQEWAQSKSLPTP 180 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 Y+V R GPDH P FTV V + GL +G SKR AEQ AA VL+REG+W Sbjct: 181 HYEVASREGPDHAPSFTVSVIVQGLKNGEGKGGSKRIAEQHAAEAVLRREGVW 233 >gi|160892686|ref|ZP_02073476.1| hypothetical protein CLOL250_00216 [Clostridium sp. L2-50] gi|156865727|gb|EDO59158.1| hypothetical protein CLOL250_00216 [Clostridium sp. L2-50] Length = 230 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 111/228 (48%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ R+ +E IGY F + LL ALTH S ++ + ESYER EFLGD IL ++S Sbjct: 1 MNTERFHNIEDIIGYTFRDLDLLVTALTHKSYANERKINKVESYERSEFLGDAILEFVVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ ++ EG+L+ SLV T SQ+++EL ++ +S SI Sbjct: 61 EYLYQNYPEYPEGKLTKLRASLVCEFTLSQISKELKFGHYVLLSKGEDLTGGRNRNSIMC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D+ E+++ A+YLDGG++ A FV ++ F + K T Y Sbjct: 121 DLFEAVLGAIYLDGGLDEAKKFVHRFLLDDVETHSLFYD--AKSTLQELAQKEEKTLTYA 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + GPDH+ + V I+G A G S++A+EQ AA L + Sbjct: 179 LLEEKGPDHNKSYVSEVCINGEHVATGEGASRKASEQTAAYNALLQIK 226 >gi|319408283|emb|CBI81936.1| ribonuclease III [Bartonella schoenbuchensis R1] Length = 236 Score = 157 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 111/226 (49%), Positives = 152/226 (67%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LEK G+ F N + L++ALTHSS+ + +YERLEFLGDR+LGLL++ +L+ Sbjct: 2 MKRHIIDQLEKLTGHRFKNENRLKRALTHSSVQGLAEGNYERLEFLGDRVLGLLVAEMLY 61 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+ +TC+++A E+ L I V +++ + ++ ADV+E Sbjct: 62 QFFPHASEGELSVRLNGLVNTQTCAEIALEMGLPDMIHVGFEMKNLENRRVANMYADVIE 121 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDG +E +F+ KYW+ RA K RRDAKTELQEWAH + G P+Y+V R Sbjct: 122 ALIAVMYLDGDLECVRSFIRKYWQDRARKMDAGRRDAKTELQEWAHTQDGAQPQYRVVKR 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDHDP F V V++ G AP G SKR AE+VAA ++L+REG+W Sbjct: 182 YGPDHDPIFMVEVKVFGFAPEIGQGSSKRHAERVAAEKILRREGVW 227 >gi|326203626|ref|ZP_08193490.1| ribonuclease III [Clostridium papyrosolvens DSM 2782] gi|325986446|gb|EGD47278.1| ribonuclease III [Clostridium papyrosolvens DSM 2782] Length = 236 Score = 157 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 116/228 (50%), Gaps = 6/228 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 R S LE IG+ F N+ ++ A+THSS ++ + + ERLEFLGD +LGL+IS Sbjct: 7 NNRISELENIIGHNFNNKDIIFAAITHSSYANEKKAKKLKYNERLEFLGDSVLGLVISEY 66 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + EGELSV +V + SQ A ++ L ++ + S+ +D Sbjct: 67 LFQKKPNLPEGELSVTRAKIVCENSLSQCATDISLGKYLLLGKGEELSGGREKISLLSDA 126 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYK 176 E+LI ALY+DGG E A FV KY + K D KT+LQE Y Sbjct: 127 FEALIGALYIDGGFETAKGFVHKYMDKIIRSCIEGKLFYDYKTQLQELVQQNGEQQISYS 186 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 VT + GPDH+ F V+I+G+ QG SK+ AEQ AA + L Sbjct: 187 VTDQFGPDHNKTFVTEVKINGVTQGQGKGHSKKEAEQNAAKDALNNLK 234 >gi|323489554|ref|ZP_08094781.1| ribonuclease 3 [Planococcus donghaensis MPA1U2] gi|323396685|gb|EGA89504.1| ribonuclease 3 [Planococcus donghaensis MPA1U2] Length = 251 Score = 157 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + L+K + F +LL +A THSS + ++ ERLEFLGD +L L +S L+ Sbjct: 23 FEQLQKELNITFKKPTLLYQAFTHSSYVNEHRRKQFTDNERLEFLGDAVLELSVSHYLYM 82 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGEL+ ++V + A EL +I + ++ ADV ES Sbjct: 83 KYPEMSEGELTKLRAAIVCEPSLVLFANELGFGKYILLGKGEELTGGRTRPALLADVFES 142 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E +F++ + D K++LQE K T Y++ Sbjct: 143 YIGALYLDQGLEPVVSFLEMVLFPKVDIGAFSHVMDYKSQLQELVQQKNTGTLSYEIIDE 202 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H F V ++ G SK+ AEQ AA +++ Sbjct: 203 IGPAHSRVFVTRVSLADRELGVGNGRSKKEAEQQAAQLAIRKL 245 >gi|160947505|ref|ZP_02094672.1| hypothetical protein PEPMIC_01439 [Parvimonas micra ATCC 33270] gi|158446639|gb|EDP23634.1| hypothetical protein PEPMIC_01439 [Parvimonas micra ATCC 33270] Length = 237 Score = 157 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 110/225 (48%), Gaps = 6/225 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62 + L + +GY F + LL A H S + ++ S ERLEFLGD ILG ++S L+ Sbjct: 10 LNELMEVLGYKFKDLELLNLAFVHRSYLNECKDATISNERLEFLGDVILGFIVSVELYEQ 69 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F ++ EG L+ + +V E+ S AR +L ++ + SI AD E+L Sbjct: 70 FPNSDEGYLTKIRSKVVCEESFSYAARTFNLGKYLLLGKGEDSFGGRNRNSILADTFEAL 129 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ALYLDGG++V +KY+ + F +D K+ LQE+ H Y + Sbjct: 130 FGALYLDGGMDVVTEIANKYFFDTVVYKIDKNIFIKDYKSYLQEYFHKNATTKISYTLVA 189 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDHD F + V I + G +K+ AEQ AA + L + G Sbjct: 190 ERGPDHDKEFDMCVNIDDVVKGYGTGKNKKQAEQQAARDALIKSG 234 >gi|289423974|ref|ZP_06425766.1| ribonuclease III [Peptostreptococcus anaerobius 653-L] gi|289155610|gb|EFD04283.1| ribonuclease III [Peptostreptococcus anaerobius 653-L] Length = 236 Score = 157 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 117/225 (52%), Gaps = 3/225 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLF 60 + S+ EK+IGY F ++ ++ ALTHSS ++ ++E ERLEFLGD +LGL++S LF Sbjct: 9 REKISSFEKKIGYIFNDKENIQVALTHSSFANEHKEYKYNERLEFLGDSVLGLVVSDYLF 68 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG+L+ ++V E+ S VAR+L+L ++ + + R+ S SI AD E Sbjct: 69 SVRTDLPEGQLTKFRANVVCEESLSVVARKLNLGEYLLLGNGERQSGGSDRDSILADATE 128 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++IAA+Y+DGG + A F+ + K+ + + Y++ Sbjct: 129 AVIAAIYIDGGFDKAKEFIMYNLRDVIAKTIDGNIFRDYKTILQEVIQSKNGRISYRLVQ 188 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDHD F + V G+ +K+ AE+ AA L+ G Sbjct: 189 EKGPDHDKVFEMEVRSGNKVLGFGVGKNKKDAEKEAAKNALENMG 233 >gi|260437031|ref|ZP_05790847.1| ribonuclease III [Butyrivibrio crossotus DSM 2876] gi|292810340|gb|EFF69545.1| ribonuclease III [Butyrivibrio crossotus DSM 2876] Length = 227 Score = 157 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 + EK+IGYA+ N LL+ ALTHSS + + + ERLEFLGD +L L +S L Sbjct: 1 MNIKEFEKKIGYAYNNVDLLKLALTHSSYGNEVYKDKLHNNERLEFLGDAVLELTVSDYL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 FN + EG LS + S+V T + ARE++L + + F SI +D + Sbjct: 61 FNEECNMPEGSLSRKRASIVCEPTLAMCAREINLPEVLFMGKGEELTGGRFRDSIVSDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++I ++YLDGGIE A F++K+ +K + D+KT LQE A + PEY +T Sbjct: 121 EAVIGSIYLDGGIECAREFINKFIL-ADIKDKQLFVDSKTILQERIQAGYKEGPEYIITG 179 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SGPDH F V I G G +K+AAEQ AA + Sbjct: 180 ESGPDHCKVFEAEVRIEGRLIGSGKGRTKKAAEQQAAYNAI 220 >gi|327399771|ref|YP_004340640.1| Ribonuclease 3 [Hippea maritima DSM 10411] gi|327182400|gb|AEA34581.1| Ribonuclease 3 [Hippea maritima DSM 10411] Length = 234 Score = 157 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 80/218 (36%), Positives = 124/218 (56%), Gaps = 2/218 (0%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 E+R+GY F N+ LL++ALTH S +S ERLEFLGD +L L+++ L N++ + Sbjct: 12 EFEERLGYTFKNKELLKRALTHRSYVKDKAKSNERLEFLGDAVLELVVTEFLINNYKNID 71 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS + V+ +T S++AR+L+L+ I V +K+ + SI D E+++ A+Y Sbjct: 72 EGKLSKIRAASVNTKTLSKLARKLELSDQILVGRSEKKEGITNNDSILEDAFEAIVGAIY 131 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDGG++ A FV+ K + + D KT LQE +FG PEY + G +H Sbjct: 132 LDGGLDKARRFVEHMLKDTIIAIVENGIIFDYKTHLQEITQKQFGCLPEYVIVKEDGQEH 191 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + F V I G+ G+ SK+ AE+ AA E +K+ Sbjct: 192 NKTFYCDVMIKGVKYGFGIGKSKKDAEKNAAKEAVKKL 229 >gi|169335334|ref|ZP_02862527.1| hypothetical protein ANASTE_01746 [Anaerofustis stercorihominis DSM 17244] gi|169258072|gb|EDS72038.1| hypothetical protein ANASTE_01746 [Anaerofustis stercorihominis DSM 17244] Length = 227 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 4/227 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + LE+++GY F ++ L++ ALTHSS S+ + ++ ERLEFLGD +L L + L+ Sbjct: 1 MEIERLEQKLGYEFKDKELIKVALTHSSKSNENKTLQNNERLEFLGDAVLDLCVGAYLYK 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 KEG L+ +V A++ + +LDL FI + + +I AD E+ Sbjct: 61 TLPGKKEGVLTKLRALIVCADSLFSASDKLDLGEFIMLGKGEMHSGGKYKKNIIADCFEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++ A+YLD E T K+ D KT LQE+ H+K Y++ Sbjct: 121 VLGAIYLDSDYEKVSTIALTLLSDVIKKAISGNLTYDYKTLLQEYIHSKNIKDFSYELVQ 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GP+HD FT V I+ QG +K+ +EQ AA LK+ + Sbjct: 181 IKGPEHDQIFTSKVIINNKDMGQGEGKNKKESEQHAALNTLKKLKLI 227 >gi|261368258|ref|ZP_05981141.1| ribonuclease III [Subdoligranulum variabile DSM 15176] gi|282569773|gb|EFB75308.1| ribonuclease III [Subdoligranulum variabile DSM 15176] Length = 225 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 117/226 (51%), Gaps = 8/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57 M+ + L++ + Y F N +LL ALTH+S ++ + ERLEFLGD +L ++ + Sbjct: 1 MATHKPEELQEVLHYQFKNPALLRIALTHTSYANESKVPTTHNERLEFLGDSVLSVVAAD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF+ EGEL+ SLVS + Q A+E+ L ++R+ S+ +D Sbjct: 61 YLFHQ-SDRPEGELTRMRASLVSEDALFQFAQEIRLGDYLRLGHGEDLGGGRNRPSVVSD 119 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++IAALYLDGG+EVA +F+ + D KT LQE Y+V Sbjct: 120 AFEAVIAALYLDGGLEVARSFIL----PFLSEGKTAEEDYKTRLQEVVQQNPSARLRYEV 175 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GPDH +FTV V A+G+ SK+AAEQ AA + L R Sbjct: 176 EGETGPDHAKQFTVAVYCDDKRLAEGVGRSKKAAEQHAAKQALDRL 221 >gi|222475478|ref|YP_002563895.1| ribonuclease III (rnc) [Anaplasma marginale str. Florida] gi|254995287|ref|ZP_05277477.1| ribonuclease III [Anaplasma marginale str. Mississippi] gi|255003466|ref|ZP_05278430.1| ribonuclease III [Anaplasma marginale str. Puerto Rico] gi|254807234|sp|B9KGT5|RNC_ANAMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|222419616|gb|ACM49639.1| ribonuclease III (rnc) [Anaplasma marginale str. Florida] Length = 232 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 118/228 (51%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRI----GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56 M + +L +I GY F + LL +ALTH S+S+ +YERLEFLGD +L + +S Sbjct: 1 MHPVDKKSLALKIYEATGYQFRDLDLLLEALTHPSLSYKSAANYERLEFLGDAVLSMTVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +L+ F EG L+ + +LV ++AR + L I +S R S Sbjct: 61 EMLYRLFPDDDEGCLTRKRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLE 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 + +E+LI A+Y+DGG E +F+ K+W + S +D KT LQEW + P Y Sbjct: 121 NALEALIGAMYMDGGPEAYRSFIHKHWLARAQHMSYTPPQDPKTALQEWVQGRGWAMPLY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K+ +SGP+H P F V V I G SK+ AEQ AA +LK+ Sbjct: 181 KLVSKSGPEHKPVFAVEVSIQEHGNVLGTGSSKKLAEQEAAKLMLKKI 228 >gi|269121067|ref|YP_003309244.1| ribonuclease III [Sebaldella termitidis ATCC 33386] gi|268614945|gb|ACZ09313.1| ribonuclease III [Sebaldella termitidis ATCC 33386] Length = 231 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 113/225 (50%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M + L ++IGY F + LL++AL H S ++ + E + ERLEFLGD +L L+ + Sbjct: 1 MDDSKLRELMEKIGYEFDDIKLLKEALIHRSYANEHGEIENINNERLEFLGDAVLDLIST 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ EG+L+ + ++S S V++E+ L ++ +S+ SI Sbjct: 61 EYIYTKEKDDNEGDLAKLKSRIISEPIFSAVSKEIALGEYLFLSNGEEITGGRDRKSILG 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+LI A+++D G + A KY K + D KT LQE +KF + P Sbjct: 121 DAFEALIGAIFMDSGFDEAKRIALKYLKDKIDNIDDLEELKDYKTLLQELFQSKFHIIPN 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 Y++ GPDH+ +F + V++ G SK+ AE+ AA E Sbjct: 181 YEILSEKGPDHNKKFEIAVKLKEEIVGIGTGTSKKEAEKNAAREA 225 >gi|46143661|ref|ZP_00134800.2| COG0571: dsRNA-specific ribonuclease [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 226 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 1 MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 58 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 118 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 178 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 223 >gi|307247515|ref|ZP_07529560.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249746|ref|ZP_07531725.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307254355|ref|ZP_07536193.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258813|ref|ZP_07540545.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306856018|gb|EFM88176.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858254|gb|EFM90331.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306862654|gb|EFM94610.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867164|gb|EFM99020.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 243 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 18 MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 75 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 135 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240 >gi|307252103|ref|ZP_07534002.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860403|gb|EFM92417.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 243 Score = 156 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 18 MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 75 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 135 AIIAAIYLDAGMDKAIAQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240 >gi|307263177|ref|ZP_07544798.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306871539|gb|EFN03262.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 243 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 18 MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 75 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 135 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLVKL 240 >gi|190149854|ref|YP_001968379.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914985|gb|ACE61237.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 226 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 1 MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 58 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 118 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 178 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLVKL 223 >gi|78778218|ref|YP_394533.1| ribonuclease III [Sulfurimonas denitrificans DSM 1251] gi|78498758|gb|ABB45298.1| RNAse III [Sulfurimonas denitrificans DSM 1251] Length = 226 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 4/225 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + LE+ +GY F N+ L+ +ALTH S H ERLEFLGD +L L++ LF Sbjct: 1 MSKNIEALEEILGYKFKNQKLIIEALTHKS--HKQPYDNERLEFLGDAVLDLIVGEYLFF 58 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F S+ EG LS +LV+ + ++AR ++L +I +S+ + S+ ++ E+ Sbjct: 59 KFASSDEGTLSKIRAALVNEDGFERLARSINLGEYIYLSNAEENNGGREKASLLSNAFEA 118 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A+YL+ G+++ ++ + RD KT LQE A+FG TPEY V Sbjct: 119 MIGAIYLESGLDIVKPIAIGIIERNYQEISLDSLFRDYKTTLQELTQARFGETPEYIVVA 178 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F V V I G A+ + SK+ A+Q AA +K Sbjct: 179 SRGPDHKKEFEVAVIIEGKEYARAIGKSKKIAQQEAAEMAVKILK 223 >gi|319649604|ref|ZP_08003760.1| rnc protein [Bacillus sp. 2_A_57_CT2] gi|317398766|gb|EFV79448.1| rnc protein [Bacillus sp. 2_A_57_CT2] Length = 246 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 103/225 (45%), Gaps = 5/225 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ + IG F N LL++A THSS + ++ E ERLEFLGD +L L +S L+ Sbjct: 18 QFKEFQTEIGIQFENEKLLKQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTVSKFLY 77 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGEL+ ++V + A L S + + ++ ADV E Sbjct: 78 LKYPMMSEGELTKLRAAVVCEPSLVSFAHALSFGSLVLLGKGEEMTGGRTRPALLADVFE 137 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G++ F++K + D K++LQE T EYK+ Sbjct: 138 AFIGALYLDKGLDTVVGFLEKVVFPKIDSGAFSHVMDFKSQLQELVQRDGAGTIEYKILQ 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H+ F V ++G G SK+ AEQ AA L+ Sbjct: 198 EKGPAHNREFVSTVSLNGRELGTGTGRSKKEAEQHAAQMALEVLK 242 >gi|302389624|ref|YP_003825445.1| RNAse III [Thermosediminibacter oceani DSM 16646] gi|302200252|gb|ADL07822.1| RNAse III [Thermosediminibacter oceani DSM 16646] Length = 241 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 106/225 (47%), Gaps = 6/225 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFN 61 L++ +G F + ++L +A H S ++ +QE +RLEFLGD +L L+IS +++ Sbjct: 11 LKKLQQILGVDFDDLNILNQAFIHPSYAYEKGLSHQEHNQRLEFLGDAVLELVISEWIYD 70 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ LV E+ + ++REL L F+ + SI AD E+ Sbjct: 71 KYPNYTEGELTKLRALLVCEESLAYLSRELTLGDFLIMGKGEEITGGREKASILADTFEA 130 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA--KTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD G FV + +K ++ K + KT LQE Y V Sbjct: 131 LIGAMYLDKGFGAITGFVREKFKPVMERAEKGKLFPDYKTALQEMLQRISPDRITYNVIK 190 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH+ F V V G SK+ AEQ AA ++ Sbjct: 191 EEGPDHNKTFFVEVVWKNKILGSGCGKSKKEAEQNAAKAAIRFLK 235 >gi|255004592|ref|ZP_05279393.1| ribonuclease III [Anaplasma marginale str. Virginia] Length = 232 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 118/228 (51%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRI----GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56 M + +L +I GY F + LL +ALTH S+S+ +YERLEFLGD +L + IS Sbjct: 1 MHPVDKKSLALKIYEATGYQFRDLDLLLEALTHPSLSYKSAANYERLEFLGDAVLSMTIS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +L+ F EG L+ + +LV ++AR + L I +S R S Sbjct: 61 EMLYRLFPDDDEGCLTRKRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLE 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 + +E+LI A+Y+DGG E +F+ K+W + S +D KT LQEW + P Y Sbjct: 121 NALEALIGAMYMDGGPEAYRSFIHKHWLARAQHMSYTPPQDPKTALQEWVQGRGWAMPLY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K+ +SGP+H P F V V I G SK+ AEQ AA +L++ Sbjct: 181 KLVSKSGPEHKPVFAVEVSIQEHGNVLGTGSSKKLAEQEAAKLMLQKI 228 >gi|307260992|ref|ZP_07542674.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869294|gb|EFN01089.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 243 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF Sbjct: 18 MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS +LV +T + +AR+ L ++++ + K SI +D VE Sbjct: 75 EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 135 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240 >gi|253682200|ref|ZP_04862997.1| ribonuclease III [Clostridium botulinum D str. 1873] gi|253561912|gb|EES91364.1| ribonuclease III [Clostridium botulinum D str. 1873] Length = 236 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 113/230 (49%), Gaps = 7/230 (3%) Query: 1 MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLI 55 M R + +E ++ F + +LL+ ALTHSS + + S ERLEFLGD IL L I Sbjct: 1 MKKNRESILNEVENKLNVKFNDINLLDTALTHSSFVNENKNIYSNERLEFLGDSILQLCI 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+N ++ EG L+ + +V + +VA+E ++ +I +S TSI Sbjct: 61 SEFLYNKYEQEPEGFLTKKRALIVCGNSLHEVAKEWNIGKYINMSKGEEMTGGRTRTSIL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTP 173 +D VE++IA++YLD G A F+ + + S + D KT+LQE Sbjct: 121 SDCVEAIIASIYLDQGYATAKKFIIDNFNEIIQKANSDQIILDYKTKLQETIQKFGDYNI 180 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 EYK+ GP H +F V I G SK+ AEQ AA E LK Sbjct: 181 EYKLVSFDGPPHRRKFITEVLIDSEVKGVGEGYSKKEAEQNAAKEALKGL 230 >gi|311029996|ref|ZP_07708086.1| ribonuclease III [Bacillus sp. m3-13] Length = 247 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 107/227 (47%), Gaps = 5/227 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 + L++++G F N LL +A THSS + ++ E ERLEFLGD +L L IS Sbjct: 17 KKNFVMLQEKLGVKFHNEKLLYQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTISQF 76 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + EG+L+ S+V + A +L ++ + ++ ADV Sbjct: 77 LYKKYPMMSEGQLTKLRASIVCEPSLVSFANDLSFGQYVLLGKGEEITGGRARPALLADV 136 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ I ALYLD G+E F++KY + + D K++LQE EY+V Sbjct: 137 FEAFIGALYLDLGLETVFQFLEKYVYPKINEGAFSHVMDFKSQLQEMIQRNALGVIEYEV 196 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H+ F V ++ G+ SK+ AEQ AA L++ Sbjct: 197 LEEKGPAHNREFVSKVSLNKEEMGIGVGRSKKEAEQHAAQFALQKLK 243 >gi|213018872|ref|ZP_03334680.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995823|gb|EEB56463.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 233 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 129/233 (55%), Gaps = 6/233 (2%) Query: 1 MSALRY--STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLL 54 M +R T+ K I Y F + ++LE+ALTH S++ E SYERLEFLGD +L ++ Sbjct: 1 MINMRVLNDTISKVINYKFTDYAILEEALTHPSVNKRNSEDQVVSYERLEFLGDSVLNMV 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 +S +LF F KEG L+ R LV T + VA+E++L +FI +++ R + Sbjct: 61 VSVMLFKMFPEEKEGALAKRKTDLVCGSTIANVAKEIELGNFIIMNNSERCNGGKCNLKN 120 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 + +E+LI A+Y+DGG+E F+ ++W++ A +D KT LQEW P+ Sbjct: 121 LENSLEALIGAIYIDGGLESVEKFIIRHWEKLAKDILDPPQDPKTSLQEWTQRNKLPLPK 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 Y++ ++GP H+P FT+ V I SK+ AEQ AA +L++ T Sbjct: 181 YELVKQTGPAHNPEFTISVCIESYDKVSACAPSKKIAEQKAAELILEKIKKTT 233 >gi|320547232|ref|ZP_08041525.1| ribonuclease III [Streptococcus equinus ATCC 9812] gi|320448120|gb|EFW88870.1| ribonuclease III [Streptococcus equinus ATCC 9812] Length = 228 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M AL + L++ G F + +LL+ A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MQALD-TKLQRDFGITFKDTTLLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R FI++ + K +I Sbjct: 60 QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDDFIKLGNGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL +D G+E F+++ + K + + +D KT LQE VT +Y Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELLQGHGDVTIDY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +V+ SGP H F V V ++ A +QG+ SK+ AEQ AA L Sbjct: 180 RVSNESGPAHAKVFEVTVYVNDEAKSQGIGKSKKLAEQDAAKNAL 224 >gi|118474451|ref|YP_892860.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40] gi|261885507|ref|ZP_06009546.1| ribonuclease III [Campylobacter fetus subsp. venerealis str. Azul-94] gi|189043299|sp|A0RRM7|RNC_CAMFF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|118413677|gb|ABK82097.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40] Length = 223 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + + LE+ +GY F N++LL++ALTH S+ S + ERLEFLGD +L L++ LF Sbjct: 1 MD--KLNRLEEHLGYKFKNKTLLKEALTHKSMKSSV--NNERLEFLGDAVLDLIVGEYLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG LS +LV+ ++ + ++ ++ L F+ +S+ + S+ +D +E Sbjct: 57 FKFKDTDEGNLSKLRAALVNEKSFASISSQIRLGDFLYLSAAEDNNNGRNKPSLVSDALE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 +L+ A+YL+ G+E + + +D KT LQE A+FGVTP Y++ Sbjct: 117 ALMGAIYLESGLEAVKKIFINLLESQYNNIDLQSLGKDYKTTLQEITQARFGVTPRYELV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 SGPDH F + V ++ A+ + SK+ AEQ AA +VL+ I Sbjct: 177 SSSGPDHKKSFEMAVFLNDKELARAIGNSKKEAEQSAAWKVLQGMNI 223 >gi|197303071|ref|ZP_03168119.1| hypothetical protein RUMLAC_01798 [Ruminococcus lactaris ATCC 29176] gi|197297926|gb|EDY32478.1| hypothetical protein RUMLAC_01798 [Ruminococcus lactaris ATCC 29176] Length = 229 Score = 155 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 111/224 (49%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M R LEK+IGY F N LLE+A+ HSS ++ ERLEFLGD +L L+ S Sbjct: 1 MDK-RLKELEKKIGYTFENHKLLERAMMHSSYTNEKHLEKYRCNERLEFLGDAVLELISS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF EGEL+ S+V + + AR++DL S++ + SI + Sbjct: 60 EYLFGELPRVSEGELTKTRASMVCEPSLAMCARDIDLGSYLLLGKGEEATGGRMRDSITS 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LI A+YLDGG + + L+ K D+KT LQE A Y+ Sbjct: 120 DAMEALIGAIYLDGGF-TSAKEFIHRFILTDLEDKKLFYDSKTILQEIVQANKAGNITYE 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + GPDH+ F V V I G G SK+AAEQ AA + + Sbjct: 179 LVGEEGPDHNKTFEVRVRIGGQPYGSGKGRSKKAAEQKAAYQAI 222 >gi|182417248|ref|ZP_02948601.1| ribonuclease III [Clostridium butyricum 5521] gi|237669155|ref|ZP_04529139.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378894|gb|EDT76407.1| ribonuclease III [Clostridium butyricum 5521] gi|237657503|gb|EEP55059.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262] Length = 232 Score = 155 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 123/227 (54%), Gaps = 4/227 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58 M+ +E+ +G F N +LL+ ALTHSS ++ +++ ERLEFLGD +L L I+ Sbjct: 1 MNKYTLKEIEENLGVCFNNPTLLKTALTHSSFANQFKDAEYNERLEFLGDAVLQLCITEY 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LFN+F S EGEL+ + +V + ++A++L L +IR+S SIQAD Sbjct: 61 LFNNFKSKSEGELTKTRSLIVCENSLYEIAKKLHLGEYIRMSKGEELTGGRERISIQADA 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYK 176 VE++IAA+YLD GI F+ ++++ + + D KT+LQE+ V+ Y+ Sbjct: 121 VEAVIAAVYLDKGIGFVRDFILLHFEEIIKKAINNEIILDFKTKLQEFLQKDGEVSIHYE 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GP H +F V I +G SK+ AEQ AA + L + Sbjct: 181 LIKHEGPPHRRKFFTNVVIENNIMGEGCGYSKKEAEQNAAKQALMKL 227 >gi|220931875|ref|YP_002508783.1| Ribonuclease III [Halothermothrix orenii H 168] gi|219993185|gb|ACL69788.1| Ribonuclease III [Halothermothrix orenii H 168] Length = 236 Score = 155 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 75/217 (34%), Positives = 109/217 (50%), Gaps = 6/217 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 F + SLL+KA+TH S H + ERLEFLGD +L ++IST L+ +F EG Sbjct: 18 NIRFNDISLLQKAVTHKSFVHEKSDPDLEDNERLEFLGDSVLSIVISTYLYKNFPEYNEG 77 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 EL+ +VS+ + AREL L +I + + SI AD +E++I A+YLD Sbjct: 78 ELAKMRAYIVSSSHLACKARELGLGKYILMGKGEELNGGRERESILADTLEAVIGAIYLD 137 Query: 130 GGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G + ++K G RD KT LQE+ +Y + GPDH+ Sbjct: 138 QGFNTITDLLINFFKDDVKKLDQGNIIRDYKTYLQEFIQKDGSCEIKYNIINEYGPDHNK 197 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +F V V+++G +G SK+ AEQ AA + L G Sbjct: 198 KFEVGVKVNGKELGRGTGFSKKEAEQKAAKDALSNLG 234 >gi|227821403|ref|YP_002825373.1| ribonuclease III [Sinorhizobium fredii NGR234] gi|259491961|sp|C3M8S4|RNC_RHISN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|227340402|gb|ACP24620.1| ribonuclease III [Sinorhizobium fredii NGR234] Length = 239 Score = 155 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 131/225 (58%), Positives = 163/225 (72%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 SA + LE IGY FA + L++ALTHSS ++ +Y+RLEFLGDR+LGL ++ LLF Sbjct: 8 SAEDRARLETAIGYQFAEKERLDRALTHSSARNARASNYQRLEFLGDRVLGLCVAELLFQ 67 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A EGELSVR N LVSAE+C++VA EL L +IR SD++K M +++ADVVES Sbjct: 68 TFLDANEGELSVRLNQLVSAESCARVADELSLHEYIRTGSDVKKITGKHMMNVRADVVES 127 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LIAA+YLDGG+E A FV ++W RA + RRDAKTELQEWAHAKFG P Y+ RS Sbjct: 128 LIAAIYLDGGLEAARRFVLRHWTDRAASADGARRDAKTELQEWAHAKFGAAPRYRTDDRS 187 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDHDPRFTV VE+ G+AP G D SKR AEQ+AA +L+REG+W Sbjct: 188 GPDHDPRFTVTVEVDGIAPETGTDRSKRGAEQIAAMRLLEREGVW 232 >gi|310779301|ref|YP_003967634.1| RNAse III [Ilyobacter polytropus DSM 2926] gi|309748624|gb|ADO83286.1| RNAse III [Ilyobacter polytropus DSM 2926] Length = 237 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 6/231 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M + LEK++ Y F ++ LL+ AL H S + + + ERLE LGD +L L+++ Sbjct: 1 MGESCFVELEKKLKYTFKSKKLLKHALIHRSYGNENWDYKKVNNERLELLGDAVLDLVVT 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ HF S+ EG+L+ + +VS ++++R+L + + + +S +SI Sbjct: 61 EYLYLHFTSSSEGDLAKLKSMIVSEPVLAKISRKLGVGNHLLLSKGEELTGGRDRSSILG 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 DV E+++ A+YLD +A F K+ K+ + D KT LQE++ ++ V P Sbjct: 121 DVFEAILGAVYLDSDFMLAKEFAIKHLKRFIDHIDENEDLIDFKTILQEFSQREYKVIPS 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 Y+V GPDH F + V+I+ G +K++AEQ AA ++ G+ Sbjct: 181 YEVIKEMGPDHRKSFEIAVKINDELMGLGTGRNKKSAEQSAARNACRKLGV 231 >gi|254519218|ref|ZP_05131274.1| ribonuclease III [Clostridium sp. 7_2_43FAA] gi|226912967|gb|EEH98168.1| ribonuclease III [Clostridium sp. 7_2_43FAA] Length = 242 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 115/227 (50%), Gaps = 4/227 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTL 58 M+ +E IG F LL+ ALTHSS ++ +++ ER EFLGD IL L I+ Sbjct: 11 MAKFNIKEVEDSIGLTFNEPKLLKTALTHSSYANQHKDQEYNERFEFLGDSILQLCITEY 70 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF ++ + EGEL+ + +V + ++ ++L+L FIR+S SI AD Sbjct: 71 LFLNYKNKSEGELTKIRSLIVCENSLYEIGKKLNLGYFIRISRGEELTGGRERVSIIADA 130 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYK 176 VE+L+A +YLD G+E ++ ++K+ + D KT+LQE V+ Y+ Sbjct: 131 VEALLAGIYLDKGLEFVKDYIIGHFKEIIDKAINNDIVLDYKTKLQEEMQKSGEVSIIYE 190 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GP H +F V I +G SK+ +EQ AA E L+ Sbjct: 191 LLKYEGPPHRRKFFTSVLIEDRELGKGEGYSKKESEQNAAKEALRNL 237 >gi|160938006|ref|ZP_02085363.1| hypothetical protein CLOBOL_02899 [Clostridium bolteae ATCC BAA-613] gi|158439000|gb|EDP16755.1| hypothetical protein CLOBOL_02899 [Clostridium bolteae ATCC BAA-613] Length = 234 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 118/228 (51%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M++ LE+RI Y F N++L +ALTHSS ++ ++ ERLEFLGD +L ++ S Sbjct: 1 MNS-HLKELEERIAYEFKNKNLFTQALTHSSYANEHRLDHSRCNERLEFLGDAVLEIVTS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ +++ EG+L+ S+V T + A +++L ++ + S+ + Sbjct: 60 EFLYRKYETLPEGDLTKIRASIVCEPTLAYCAGDIELGQYLYLGKGEDATGGRNRNSVVS 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LI A+YLDGG A F+ ++ + D+KT LQE ++ Y+ Sbjct: 120 DAMEALIGAIYLDGGFANAKEFIHRFILNDIEHK-QLFYDSKTILQEMVQSRQEAPLSYE 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + GPDH+ F V +I +G +K+AAEQVAA + + Sbjct: 179 IIREEGPDHNKSFEVCAKIGDEEVGRGAGRTKKAAEQVAAYNGILKLK 226 >gi|291288904|ref|YP_003505720.1| ribonuclease III [Denitrovibrio acetiphilus DSM 12809] gi|290886064|gb|ADD69764.1| ribonuclease III [Denitrovibrio acetiphilus DSM 12809] Length = 235 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 129/227 (56%), Gaps = 4/227 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLL 59 S++ +LE R+GY F+++S++ +ALTH S +H +++YERLEFLGD +L L+++ L Sbjct: 6 SSVDIDSLEGRLGYHFSDKSIVLEALTHRSYAHEKKNKQNYERLEFLGDAVLQLIVTEYL 65 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EG LS VS S++A EL L I + + + S+ D+ Sbjct: 66 LDRYKDYDEGLLSKLRGYFVSEGFLSRIAIELKLGEHILLGKGEKASGGKYKESLLCDIF 125 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 ES++AA+YLDGG A + +++ R + DAK+ELQ+ + KFG P+Y V Sbjct: 126 ESVVAAIYLDGGYGFARDIIIRHFGSRIDEDISNSSFVDAKSELQKISQRKFGTLPDYTV 185 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP+HD F V V++ L QG+ +K++AE+ AA L++ G Sbjct: 186 LDEKGPEHDKIFVVRVDVETLVSEQGIGKTKKSAEKDAAKNALRKLG 232 >gi|189219126|ref|YP_001939767.1| Ribonuclease III [Methylacidiphilum infernorum V4] gi|189185984|gb|ACD83169.1| Ribonuclease III [Methylacidiphilum infernorum V4] Length = 247 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 10/230 (4%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLL 59 ++ LEK++GYAF N LLE+ALTH S + ++RLEFLGD +LGL ++ L Sbjct: 1 MQLEELEKKMGYAFKNPQLLEEALTHPSFFVESIRVNKGDFQRLEFLGDAVLGLAVTEKL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F S EG+L+ LVS + +A L++ ++R+ K+ S A+ + Sbjct: 61 FQLFPSFDEGKLTKLRARLVSRKNLCSLASLLEIGKYLRLGKGEEKNQGRTKPSNLANAL 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL------KSGKFRRDAKTELQEWAHAKFGVTP 173 ES+I ALYLDGG + A +F+ + + + ++K LQE+ K P Sbjct: 121 ESVIGALYLDGGWDRAKSFIFELFNPLFMELEKDPMRFVEHENSKGLLQEFLQKKGTELP 180 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y++ SG H+ + V V +G SK+ AE AA E ++ Sbjct: 181 IYRIVLESGEAHNKWYEVEVSWKNQVLGKGSGKSKKEAELRAAKEAFEKL 230 >gi|57238646|ref|YP_179777.1| ribonuclease III [Campylobacter jejuni RM1221] gi|81353160|sp|Q5HSF8|RNC_CAMJR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|57167450|gb|AAW36229.1| ribonuclease III [Campylobacter jejuni RM1221] gi|315059085|gb|ADT73414.1| Ribonuclease III [Campylobacter jejuni subsp. jejuni S3] Length = 224 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF Sbjct: 1 MKNI--EKLERSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGREKPSILSDALE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++L+ G E T + ++ + +D KT+LQE K G TP+Y+ Sbjct: 117 AIIGAIHLEAGFEFTKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 177 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222 >gi|29377554|ref|NP_816708.1| ribonuclease III [Enterococcus faecalis V583] gi|255970707|ref|ZP_05421293.1| ribonuclease III [Enterococcus faecalis T1] gi|255974283|ref|ZP_05424869.1| ribonuclease III [Enterococcus faecalis T2] gi|256618145|ref|ZP_05474991.1| ribonuclease III [Enterococcus faecalis ATCC 4200] gi|256761074|ref|ZP_05501654.1| ribonuclease III [Enterococcus faecalis T3] gi|256958378|ref|ZP_05562549.1| ribonuclease III [Enterococcus faecalis DS5] gi|256960445|ref|ZP_05564616.1| ribonuclease III [Enterococcus faecalis Merz96] gi|256962935|ref|ZP_05567106.1| ribonuclease III [Enterococcus faecalis HIP11704] gi|257078311|ref|ZP_05572672.1| ribonuclease III [Enterococcus faecalis JH1] gi|257080500|ref|ZP_05574861.1| ribonuclease III [Enterococcus faecalis E1Sol] gi|257083236|ref|ZP_05577597.1| ribonuclease III [Enterococcus faecalis Fly1] gi|257088212|ref|ZP_05582573.1| ribonuclease III [Enterococcus faecalis D6] gi|257091337|ref|ZP_05585698.1| ribonuclease III [Enterococcus faecalis CH188] gi|257417226|ref|ZP_05594220.1| ribonuclease III [Enterococcus faecalis AR01/DG] gi|257417943|ref|ZP_05594937.1| ribonuclease III [Enterococcus faecalis T11] gi|257420449|ref|ZP_05597439.1| ribonuclease III [Enterococcus faecalis X98] gi|294780225|ref|ZP_06745597.1| ribonuclease III [Enterococcus faecalis PC1.1] gi|300861565|ref|ZP_07107649.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11] gi|75541427|sp|Q82ZG1|RNC_ENTFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|29345021|gb|AAO82778.1| ribonuclease III [Enterococcus faecalis V583] gi|255961725|gb|EET94201.1| ribonuclease III [Enterococcus faecalis T1] gi|255967155|gb|EET97777.1| ribonuclease III [Enterococcus faecalis T2] gi|256597672|gb|EEU16848.1| ribonuclease III [Enterococcus faecalis ATCC 4200] gi|256682325|gb|EEU22020.1| ribonuclease III [Enterococcus faecalis T3] gi|256948874|gb|EEU65506.1| ribonuclease III [Enterococcus faecalis DS5] gi|256950941|gb|EEU67573.1| ribonuclease III [Enterococcus faecalis Merz96] gi|256953431|gb|EEU70063.1| ribonuclease III [Enterococcus faecalis HIP11704] gi|256986341|gb|EEU73643.1| ribonuclease III [Enterococcus faecalis JH1] gi|256988530|gb|EEU75832.1| ribonuclease III [Enterococcus faecalis E1Sol] gi|256991266|gb|EEU78568.1| ribonuclease III [Enterococcus faecalis Fly1] gi|256996242|gb|EEU83544.1| ribonuclease III [Enterococcus faecalis D6] gi|257000149|gb|EEU86669.1| ribonuclease III [Enterococcus faecalis CH188] gi|257159054|gb|EEU89014.1| ribonuclease III [Enterococcus faecalis ARO1/DG] gi|257159771|gb|EEU89731.1| ribonuclease III [Enterococcus faecalis T11] gi|257162273|gb|EEU92233.1| ribonuclease III [Enterococcus faecalis X98] gi|294452768|gb|EFG21198.1| ribonuclease III [Enterococcus faecalis PC1.1] gi|295114417|emb|CBL33054.1| RNAse III [Enterococcus sp. 7L76] gi|300849026|gb|EFK76779.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11] Length = 230 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 110/228 (48%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L++R G F + +LLE+A THSS + ++ ERLEFLGD +L L++S Sbjct: 1 MDNQLTTELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ F EG+L+ ++V ++ ++ A+E ++I + S+ Sbjct: 61 QYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD + A F++ + D KT+LQE K V+ EY Sbjct: 121 DLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHEMDHKTQLQEVLQRKGDVSIEY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ GP HD F V ++G G SK+ AEQ AA LK Sbjct: 181 RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSI 228 >gi|307244287|ref|ZP_07526402.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678] gi|306492437|gb|EFM64475.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678] Length = 235 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 3/222 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63 E++IGY F N++ ++ ALTHSS ++ ++E ERLEFLGD +LGL++S LF Sbjct: 12 IRAFEEKIGYEFKNKTYIQTALTHSSFANEHKEFNYNERLEFLGDSVLGLVVSDYLFRAR 71 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG+L+ ++V E+ S VAR+++L + + + S SI AD E++I Sbjct: 72 NDLPEGKLTRLRANVVCEESLSAVARKINLGDHLFLGKGEKTSGGSDRDSILADATEAVI 131 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AA+YLDGG + A F+ + K+ + + YK+ SG Sbjct: 132 AAIYLDGGFDQAKDFILSNLRDTIAKNIDGNIFRDYKTILQEIIQGNNGKISYKLVGESG 191 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH+ F + V+ G +K+ AE+ AA + L + G Sbjct: 192 PDHNKEFEMQVKCGQDTIGIGKGKNKKEAEKEAARDALVKMG 233 >gi|150395906|ref|YP_001326373.1| ribonuclease III [Sinorhizobium medicae WSM419] gi|189043356|sp|A6U7A8|RNC_SINMW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|150027421|gb|ABR59538.1| Ribonuclease III [Sinorhizobium medicae WSM419] Length = 238 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 132/225 (58%), Positives = 164/225 (72%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 +A + LE IGY FA + L++ALTHSS +Y+RLEFLGDRILGL ++ LLF Sbjct: 7 NAEDRARLEAAIGYQFAEKERLDRALTHSSARSGRAINYQRLEFLGDRILGLCVAELLFQ 66 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A EGELSVR N LVSAE+C++VA EL L FIR SD++K M +++ADVVES Sbjct: 67 TFSDANEGELSVRLNQLVSAESCAKVADELSLHEFIRTGSDVKKITGKHMMNVRADVVES 126 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LIAA+YLDGG+E A FV ++W RA + RRDAKTELQEWAHA+FGV P+Y+ RS Sbjct: 127 LIAAIYLDGGLEAARRFVLEHWTHRAASADGARRDAKTELQEWAHARFGVAPKYRTEDRS 186 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDHDPRFTV VE+ G+ P G+D SKR AEQVAA ++L+REG+W Sbjct: 187 GPDHDPRFTVTVEVDGIDPETGVDRSKRGAEQVAAMKLLEREGVW 231 >gi|114706260|ref|ZP_01439162.1| ribonuclease III [Fulvimarina pelagi HTCC2506] gi|114538121|gb|EAU41243.1| ribonuclease III [Fulvimarina pelagi HTCC2506] Length = 234 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 116/223 (52%), Positives = 154/223 (69%), Gaps = 2/223 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + LEKRIG F++ L++ALTHSS S SYERLEFLGDR+LGL+++ LF F Sbjct: 8 LAELEKRIGVRFSDHDRLQRALTHSSFRSSKGDGRSYERLEFLGDRVLGLVVADKLFEMF 67 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +A EGELS+R NSLV+AETC+ VA E+ L F+R DLRK S SI+AD++ESLI Sbjct: 68 PNADEGELSLRLNSLVNAETCAAVADEIGLYEFVRQGGDLRKLAASRTKSIRADLMESLI 127 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AA+YL+ G++ A F++ +W +R KS RRD KT LQEWAH + P+Y+V RSGP Sbjct: 128 AAIYLNSGLDDARAFIESHWGERLNKSVAARRDPKTALQEWAHQRGPEPPKYEVVDRSGP 187 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 DH+P+F + V I+G+ P++G SKR AEQ AA +L RE +W Sbjct: 188 DHNPKFRIKVSIAGVDPSEGEGSSKRLAEQSAATAMLIRENVW 230 >gi|110801795|ref|YP_699005.1| ribonuclease III [Clostridium perfringens SM101] gi|110682296|gb|ABG85666.1| ribonuclease III [Clostridium perfringens SM101] Length = 241 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 120/227 (52%), Gaps = 4/227 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLL 59 + +EK IG F N+ +L ALTHSS ++ +++ ERLEFLGD +L L ++ L Sbjct: 6 KDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKYL 65 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 FN++ EGEL+ +V + +V++ L L +IR+S TSIQAD + Sbjct: 66 FNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADAL 125 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++IAA+YLD GIEVA F+ + +K + + D KT LQE V Y + Sbjct: 126 EAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYNL 185 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H +F + I+ QG+ SK+ +EQ AA L+R G Sbjct: 186 VKHEGPPHRRKFFTDLLINNEVMGQGVGFSKKESEQNAAKAALQRLG 232 >gi|297620496|ref|YP_003708633.1| ribonuclease III [Waddlia chondrophila WSU 86-1044] gi|297375797|gb|ADI37627.1| ribonuclease III [Waddlia chondrophila WSU 86-1044] Length = 252 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 122/232 (52%), Gaps = 9/232 (3%) Query: 1 MSALR-----YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILG 52 M+ L+ S +E +IG+ F ++ LL A TH S + + ERLE+LGD ILG Sbjct: 10 MNDLKELLSLSSEIEAKIGHTFKDKQLLSLAFTHRSYINENNDAHEHNERLEYLGDSILG 69 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 LI+ L+ + + EGELS + LV A +C ++LDL ++ + + + Sbjct: 70 FLIAEYLYKYLPNTPEGELSYLRSRLVEASSCVIYVQKLDLEQYLLLGKGEQMNDGRGRD 129 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGV 171 SI AD+ ESLI A+YLDGG++ A F+ K + + + K + K +LQ++ K+ Sbjct: 130 SILADLFESLIGAIYLDGGMDAARLFLFKNFSKEIEEILKTPICNWKAQLQDYCQKKYRH 189 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P YKV SGPDH FT+ V I+ G SK+ A+Q AA + R Sbjct: 190 PPLYKVVSESGPDHQKIFTISVLINNQEVGHGEGPSKKEAQQAAAKDAFSRI 241 >gi|306833964|ref|ZP_07467088.1| ribonuclease III [Streptococcus bovis ATCC 700338] gi|304423965|gb|EFM27107.1| ribonuclease III [Streptococcus bovis ATCC 700338] Length = 228 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M AL + L++ G F +++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MQALD-TKLQQDFGIVFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R FI++ + K +I Sbjct: 60 QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL +D G+E F+++ + K + + +D KT LQE VT +Y Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELLQGHGDVTIDY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +V+ SGP H F V V ++ A +QG+ SK+ AEQ AA L Sbjct: 180 RVSNESGPAHAKVFEVTVYVNDKAKSQGIGKSKKLAEQDAAKNAL 224 >gi|332981630|ref|YP_004463071.1| ribonuclease III [Mahella australiensis 50-1 BON] gi|332699308|gb|AEE96249.1| ribonuclease III [Mahella australiensis 50-1 BON] Length = 228 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNH 62 R L +GY F + + L++ALTHSS ++ + Y ERLE LGD +L ++I+ LF Sbjct: 3 RLKELMDLLGYRFNDINKLDEALTHSSYAYEHGLDYYNERLELLGDSVLNIIITDYLFVT 62 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG LS +++VS + +VA ++L S++ +S + S AD VE++ Sbjct: 63 YPELSEGNLSKLRSNIVSEKPLYKVAAAMNLGSYLLLSRGEKLSHGDMRPSTLADTVEAI 122 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLDGG + A FV ++ D K+ELQE +Y++ Sbjct: 123 IGAVYLDGGFDAAKVFVLSLLAPIIEETAAISNFNDYKSELQERLQIDGYSDIKYEIIRE 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V++ G +G SK+ AEQ AA + L Sbjct: 183 EGPDHDKMFFAEVKVDGKPVGRGSGRSKKDAEQKAAQQALSEL 225 >gi|1389549|dbj|BAA10976.1| ORF3 [Bacillus subtilis] Length = 266 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 108/224 (48%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS LF Sbjct: 19 QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLF 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+L+ ++V + +A EL + + ++ ADV E Sbjct: 79 PKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G+E +F+ Y + D K++LQE+ + EYK++ Sbjct: 139 AFIGALYLDQGLEPVESFLKVYVFPKINDGAFPHVMDFKSQLQEYVQRDGKGSLEYKISN 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F +V + G G SK+ AEQ AA E L + Sbjct: 199 EKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAKL 242 >gi|257126255|ref|YP_003164369.1| ribonuclease III [Leptotrichia buccalis C-1013-b] gi|257050194|gb|ACV39378.1| ribonuclease III [Leptotrichia buccalis C-1013-b] Length = 232 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 6/228 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTL 58 L K+IGY F N+ LE+ALTH S S+ + + E+LEFLGD IL L+ + Sbjct: 4 RKNSKDLIKKIGYEFKNKKYLEEALTHRSYSNEAEKTRRFNNEKLEFLGDAILNLITTEY 63 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 +++ + EGEL+ + ++S S +A ++ L ++ +S+ SI D Sbjct: 64 IYDLYGKKTEGELAKLKSQIISEPVFSTIASDIKLGEYLYLSNGEIMSGGRNRRSILGDA 123 Query: 119 VESLIAALYLDGGIEVAGTFVDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E+LI A++ D A K+ K L+ + D KT LQE+ K+ PEYK Sbjct: 124 FEALIGAIFKDSDYYTAKNVALKFLLGKINKLEEIEGTGDYKTILQEFVQGKYKKMPEYK 183 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + GPDH+ F + V + G SK+ AE+ AA E L++ Sbjct: 184 LLRTKGPDHNKVFEICVRWNDKIYGIGTGKSKKEAEKHAAKEALEKLK 231 >gi|257468859|ref|ZP_05632953.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185] gi|317063109|ref|ZP_07927594.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185] gi|313688785|gb|EFS25620.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185] Length = 235 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 123/233 (52%), Gaps = 8/233 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIS 56 M Y LE +GY+F N+ LL+ +L H S + + + S ERLE LGD +L L+++ Sbjct: 1 MKR-NYLELEGNLGYSFNNKELLKNSLIHRSFGNEHWRYKKISNERLELLGDAVLDLVVT 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ +S+ EG+L+ + +VS + +++++D+ ++ +S +SI Sbjct: 60 EYLYKSHESSTEGDLAKIKSMVVSEPVLASISKKMDVGKYLLLSKGEEMTGGRERSSILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+++ A+YLD E A + + + K D KT LQE++ ++ + P Sbjct: 120 DAFEAILGAIYLDSDFETAKKYALSHIQDSIDHVDKNEDILDFKTILQEYSQREYKIIPS 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 Y+V +GPDH F + V+I +G +K++AEQ AA E+ K+ G+ T Sbjct: 180 YEVIRETGPDHQKIFEIEVKIGDRT-GRGTGKNKKSAEQSAAKELCKKLGVKT 231 >gi|34558193|ref|NP_908008.1| ribonuclease III [Wolinella succinogenes DSM 1740] gi|81653364|sp|Q7M840|RNC_WOLSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|34483912|emb|CAE10908.1| RIBONUCLEASE III [Wolinella succinogenes] Length = 238 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ EKR+GY F N++LL +ALTH S Y + ERLEFLGD +L L+I LF Sbjct: 1 MESI--EEFEKRLGYRFQNKNLLIEALTHKSYKKPY--NNERLEFLGDAVLDLVIGEFLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS SLV+ + +++A + L I +S+ + S+ ++ E Sbjct: 57 LKFPKADEGELSKMRASLVNEKGFAKLAERVSLGRHIFISNAEENNKGREKPSLLSNAFE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVT 178 + + A+YL+ G+ V V + + K RD KT LQE AKFG TPEY + Sbjct: 117 ATMGAIYLETGLSVVREVVHRLLDEVYPKIDLGSLFRDYKTALQELTQAKFGETPEYVIL 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 SGPDH F V V + G A+ SK+ A+Q AA L+ Sbjct: 177 GSSGPDHKKEFEVAVCVLGSEYARACGSSKKEAQQEAARIALE 219 >gi|239948355|ref|ZP_04700108.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes scapularis] gi|239922631|gb|EER22655.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes scapularis] Length = 567 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 115/228 (50%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + + LEK + Y+F N+ LL +AL+H S+ ++ + YERLEFLGD +L L+I+ Sbjct: 1 MES--FEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVIT 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +LF +F + EG L+ + LV ET V +L L +I ++ + Sbjct: 59 EILFKNFANYNEGNLAKIRSYLVCKETICMVGAKLALKDYIIMTHGEEVVGGRDNPNNIE 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + E+LIAA+YLD IE + K W++ D KT LQEWA A P Y+ Sbjct: 119 NATEALIAAIYLDSNIETTHNIIGKLWEEFIKVQNLTDYDPKTALQEWAQASDHHLPIYR 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + R G H FTV+V++ G S + AE+ AA +L R Sbjct: 179 LIKREGAAHSSTFTVLVKVKDYEQ-TGTGHSIKEAEKNAARSLLHRLK 225 >gi|170749855|ref|YP_001756115.1| ribonuclease III [Methylobacterium radiotolerans JCM 2831] gi|170656377|gb|ACB25432.1| Ribonuclease III [Methylobacterium radiotolerans JCM 2831] Length = 259 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 90/220 (40%), Positives = 131/220 (59%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + LE+RIG++F ++ LL +ALTH+S + SY+RLEFLGDR+LGL ++ L+ F Sbjct: 28 LTALEERIGHSFGDQDLLTRALTHTSKASGRGGSYQRLEFLGDRVLGLAVADRLYGAFPE 87 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EG+LS R +LV ETC+ VA ++ + + +I ADV E+++ A Sbjct: 88 ADEGDLSRRLAALVRRETCAAVAASWEVGPHLILGQGEVMGGGRRNQTILADVCEAILGA 147 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +YLD G + A V+ +++ + RDAK+ LQEWA + P Y V R+GPDH Sbjct: 148 IYLDAGFDAARAVVETHFRPGEPTAAARGRDAKSALQEWAMGRSLPIPTYAVVERTGPDH 207 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PRF + V++ GL P G SKR AEQ AA +++REGI Sbjct: 208 APRFRIAVQVEGLEPGLGDGTSKRIAEQAAARALMEREGI 247 >gi|121613213|ref|YP_001001278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176] gi|121504230|gb|EAQ72743.2| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176] Length = 225 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF Sbjct: 1 MMK-NIEKLERSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E Sbjct: 58 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++L+ G E A T + ++ + +D KT+LQE K G TP+Y+ Sbjct: 118 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 178 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 223 >gi|241203889|ref|YP_002974985.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857779|gb|ACS55446.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 239 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 131/222 (59%), Positives = 169/222 (76%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE IG+ FA + L++ALTH+S +YERLEFLGDR+LGL I+ LLF F Sbjct: 11 DRAKLEALIGHDFAEKERLDRALTHASARTEKGGNYERLEFLGDRVLGLCIAELLFRTFG 70 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +A EGELSVR N LVSAETC+ VA EL+L +IR +D++K M +++ADVVESLIA Sbjct: 71 TAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVESLIA 130 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG+EVA F+ +YW+ RA+++ +RDAKTELQEW+HAKFGVTP Y+V RSGPD Sbjct: 131 AIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDERSGPD 190 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 HDPRF V VE++G+ P G++ SKRAAEQVAA ++L+REGIW Sbjct: 191 HDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232 >gi|190571469|ref|YP_001975827.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|238056573|sp|B3CMS0|RNC_WOLPP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|190357741|emb|CAQ55192.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 230 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 128/231 (55%), Gaps = 5/231 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M L T+ K I Y F + ++LE+ALTH S++ E SYERLEFLGD +L +++S Sbjct: 1 MRVLN-DTISKVINYKFTDYAILEEALTHPSVNKRNSEDQVVSYERLEFLGDSVLNMVVS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +LF F KEG L+ R LV T + VA+E++L +FI +++ R + Sbjct: 60 VMLFKMFPEEKEGALAKRKTDLVCGSTIANVAKEIELGNFIIMNNSERCNGGKCNLKNLE 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + +E+LI A+Y+DGG+E F+ ++W++ A +D KT LQEW P+Y+ Sbjct: 120 NSLEALIGAIYIDGGLESVEKFIIRHWEKLAKDILDPPQDPKTSLQEWTQRNKLPLPKYE 179 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + ++GP H+P FT+ V I SK+ AEQ AA +L++ T Sbjct: 180 LVKQTGPAHNPEFTISVCIESYDKVSACAPSKKIAEQKAAELILEKIKKTT 230 >gi|163814044|ref|ZP_02205436.1| hypothetical protein COPEUT_00197 [Coprococcus eutactus ATCC 27759] gi|158450493|gb|EDP27488.1| hypothetical protein COPEUT_00197 [Coprococcus eutactus ATCC 27759] Length = 232 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 113/227 (49%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ Y LEK+IGY F + +LL ALTH+S ++ + +SYERLEFLGD IL ++S Sbjct: 4 MNR-NYDELEKKIGYQFKDINLLITALTHTSFANELKVNKTDSYERLEFLGDAILEYIVS 62 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF +EG L+ SLV T SQ++ L ++R+S SI Sbjct: 63 EYLFLKKKEYEEGRLTKLRASLVCEFTLSQISESLGYGDYVRLSKGEELTGGRKRKSILC 122 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D+ ES++ A+YLDGGIE A FV ++ F + K G Y+ Sbjct: 123 DLFESVLGAMYLDGGIEPAKEFVHRFLLDDVETKSLFYD--AKSTLQEFCQKHGRQLSYE 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GP+H F I+G A+G +++ +EQ+AA + L + Sbjct: 181 LIEERGPEHSKIFVSDAVINGKVTARGEGPNRKTSEQMAAYKTLLQL 227 >gi|205355648|ref|ZP_03222418.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421] gi|205346425|gb|EDZ33058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421] Length = 225 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF Sbjct: 1 MMK-NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E Sbjct: 58 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDTLE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++L+ G E A T + ++ + +D KT+LQE K G TP+Y+ Sbjct: 118 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 178 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 223 >gi|110798679|ref|YP_696405.1| ribonuclease III [Clostridium perfringens ATCC 13124] gi|110673326|gb|ABG82313.1| ribonuclease III [Clostridium perfringens ATCC 13124] Length = 241 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 120/227 (52%), Gaps = 4/227 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLL 59 + +EK IG F N+ +L ALTHSS ++ +++ ERLEFLGD +L L ++ L Sbjct: 6 KDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKYL 65 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 FN++ EGEL+ +V + +V++ L L +IR+S TSIQAD + Sbjct: 66 FNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADAL 125 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++IAA+YLD GIEVA F+ + +K + + D KT LQE V Y + Sbjct: 126 EAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYNL 185 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H +F + I+ QG+ SK+ +EQ AA L+R G Sbjct: 186 VKHEGPPHRRKFFTDLLINNEIMGQGVGFSKKESEQNAAKAALQRLG 232 >gi|126654291|ref|ZP_01726068.1| ribonuclease III [Bacillus sp. B14905] gi|126589255|gb|EAZ83416.1| ribonuclease III [Bacillus sp. B14905] Length = 254 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 ++ L+ + F N++LL +A THSS + ++ ERLEFLGD +L L +S LF Sbjct: 22 QFELLQHELNITFVNKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EGEL+ S+V + A EL F+ + ++ ADV E Sbjct: 82 EKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 S + ALYLD ++ +F+++ + D K++LQE Y++ Sbjct: 142 SFVGALYLDQDLQTVVSFLERIVFPKVEVGAFSHVMDFKSQLQEMVQQTNNGLLHYEIID 201 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V ++G G SK+ AEQ AA ++ Sbjct: 202 EKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAAQCAMRMM 245 >gi|325292414|ref|YP_004278278.1| ribonuclease III [Agrobacterium sp. H13-3] gi|325060267|gb|ADY63958.1| ribonuclease III [Agrobacterium sp. H13-3] Length = 237 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 130/232 (56%), Positives = 166/232 (71%), Gaps = 6/232 (2%) Query: 1 MSALR------YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54 MS + S LE IGY F ++ L++ALTH+S + +YERLEFLGDR+LGL Sbjct: 1 MSKTKPLSIAEISRLEALIGYEFKEKARLDRALTHASARSAAAGNYERLEFLGDRVLGLC 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ++ LLF+ F +A EGELSVR N LVSAE+C+ + E+ L +FIR SD++K M ++ Sbjct: 61 VAELLFSTFRNASEGELSVRLNQLVSAESCAAIGDEMGLHNFIRTGSDVKKLTGKAMLNV 120 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 +ADVVESLIA LYLDGG+E + F+ KYW+ RA + RRDAKTELQEWAHA+F VTP Sbjct: 121 RADVVESLIATLYLDGGLEASRKFILKYWQGRATRVDAGRRDAKTELQEWAHARFAVTPA 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 Y+V RSGPDHDP FTV VEI G+ P G++ SKRAAEQVAA +L+REG+W Sbjct: 181 YRVDDRSGPDHDPSFTVTVEIPGVKPETGVERSKRAAEQVAATRLLEREGVW 232 >gi|253581846|ref|ZP_04859070.1| ribonuclease III [Fusobacterium varium ATCC 27725] gi|251836195|gb|EES64732.1| ribonuclease III [Fusobacterium varium ATCC 27725] Length = 235 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 8/233 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIS 56 M Y LE +GY+F N+ LL+ +L H S + + + S ERLE LGD +L L+++ Sbjct: 1 MKK-NYLELEGNLGYSFNNKELLKNSLIHRSFGNEHWRYKKISNERLELLGDAVLDLVVT 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ +S+ EG+L+ + +VS + +++++D+ ++ +S +SI Sbjct: 60 EYLYKSHESSTEGDLAKIKSMVVSEPVLASISKKMDVGKYLLLSKGEEMTGGRERSSILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+++ A+YLD E A + + K K D KT LQE++ ++ + P Sbjct: 120 DAFEAILGAIYLDSDFETAKKYALSHIKDSIDHVDKNEDILDFKTILQEYSQREYKIIPS 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 Y+V +GPDH F + V I G +G +K++AEQ AA E+ K+ G+ T Sbjct: 180 YEVIRETGPDHQKVFEIEVRI-GERTGRGTGKNKKSAEQSAAKELCKKLGVKT 231 >gi|297343244|pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni gi|297343245|pdb|3N3W|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 248 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF Sbjct: 25 MKNI--EKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 80 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E Sbjct: 81 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALE 140 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++L+ G E A T + ++ + +D KT+LQE K G TP+Y+ Sbjct: 141 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 200 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 201 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 246 >gi|169827094|ref|YP_001697252.1| ribonuclease 3 [Lysinibacillus sphaericus C3-41] gi|168991582|gb|ACA39122.1| Ribonuclease 3 [Lysinibacillus sphaericus C3-41] Length = 254 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 ++ L+ + F N++LL +A THSS + ++ ERLEFLGD +L L +S LF Sbjct: 22 QFELLQHELNITFINKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EGEL+ S+V + A EL F+ + ++ ADV E Sbjct: 82 EKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 S + ALYLD ++ +F+++ + D K++LQE Y++ Sbjct: 142 SFVGALYLDQDLQTVVSFLERIVFPKVEVGAFSHVMDFKSQLQEMVQQTNNGLLHYEIID 201 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V ++G G SK+ AEQ AA ++ Sbjct: 202 EKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAAQCAMRMM 245 >gi|299821773|ref|ZP_07053661.1| ribonuclease III [Listeria grayi DSM 20601] gi|299817438|gb|EFI84674.1| ribonuclease III [Listeria grayi DSM 20601] Length = 230 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M ++ L++ +G+ F N LL++A THSS + +++ ERLEFLGD +L L +S Sbjct: 1 MD--KWEELQESVGFTFENVGLLQEAFTHSSYVNEHRKEKLNDNERLEFLGDAVLELTVS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + + EG+L+ ++V + + A + + +IR+ + K ++ A Sbjct: 59 DYLFQKYPNLAEGQLTKMRAAIVCEPSLVEFAENIHFSKYIRLGNGEEKAGGRTRPALLA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 DV ES I ALYLD G++ F+++ + D KT+LQE V +Y Sbjct: 119 DVFESFIGALYLDNGLKNVIRFLERVIFPKIDTGAFLETVDHKTQLQEIVQRDRDVLIQY 178 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + SGP H F V ++G +G +K+ AEQ AA E + + Sbjct: 179 DILEESGPAHSKAFEAQVVVNGQMLGRGEGRTKKQAEQNAAKEAINKL 226 >gi|306825115|ref|ZP_07458457.1| ribonuclease III [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432551|gb|EFM35525.1| ribonuclease III [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 232 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 113/230 (49%), Gaps = 7/230 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+KR FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + +D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR-EG 224 +VT +GP HD F V V + G + +G SK+ AEQ AA +++ G Sbjct: 180 QVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEKGLG 229 >gi|195978496|ref|YP_002123740.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975201|gb|ACG62727.1| ribonuclease III Rnc [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 231 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + LE F ++ LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MMKKLEALLENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG++S +++V E+ + +R ++I++ K +I Sbjct: 61 EYLFAKYPKQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGKGEEKSGGRHRETILG 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD GIE F+++ + + + + +D KT LQE AK V +Y Sbjct: 121 DLFEAFLGALLLDKGIEEVRRFLNQVMIPQVEQGTFEKVKDYKTCLQELLQAKGDVVIDY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V +GP H +F V V + ++G SK+ AEQ AA L + Sbjct: 181 QVISETGPAHAKQFEVAVLVDEDRLSKGTGRSKKLAEQDAAKNALAQL 228 >gi|260890105|ref|ZP_05901368.1| hypothetical protein GCWU000323_01267 [Leptotrichia hofstadii F0254] gi|260860128|gb|EEX74628.1| ribonuclease III [Leptotrichia hofstadii F0254] Length = 243 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 112/226 (49%), Gaps = 6/226 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 L ++IGY F N LE+ALTH S S+ ++ + E+LEFLGD +L L+ + ++ Sbjct: 8 DAKELMQKIGYEFKNEEYLEEALTHRSYSNETEKDRRFNNEKLEFLGDAVLNLITTEYIY 67 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ EGEL+ + ++S S +A +++L ++ +S+ SI D E Sbjct: 68 ELYEKKTEGELAKLKSQIISEPVFSTIASDIELGEYLYLSNGEIMSGGRNRRSILGDAFE 127 Query: 121 SLIAALYLDGGIEVAGTFVDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A++ D A K K L+ + D KT LQE+ K+ PEYK+ Sbjct: 128 ALIGAIFKDSDYYTAKNVALKLLLGKINKLEEIEGTGDYKTVLQEFVQGKYRKMPEYKLL 187 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDHD F + V + G+ SK+ AE+ AA E L + Sbjct: 188 NTKGPDHDKVFEISVSWNDKIYGVGIGKSKKEAEKHAAKEALVKLK 233 >gi|295706311|ref|YP_003599386.1| ribonuclease III [Bacillus megaterium DSM 319] gi|294803970|gb|ADF41036.1| ribonuclease III [Bacillus megaterium DSM 319] Length = 265 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 108/231 (46%), Gaps = 8/231 (3%) Query: 1 MS---ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGL 53 M+ ++ +K IG F N +LL +A THSS + ++ E ERLEFLGD +L L Sbjct: 29 MNVKFKQNFAEFQKEIGIQFTNEALLFQAFTHSSYVNEHRRRPYEDNERLEFLGDAVLEL 88 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +S LF + + EGEL+ ++V + A E+D + + + Sbjct: 89 TVSQFLFKKYPTMSEGELTKLRAAVVCEPSLVTFANEMDFGKLVLLGKGEEMTGGRSRPA 148 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVT 172 + ADV E+ I ALYLD G++ T + K + + D K++LQE Sbjct: 149 LLADVFEAFIGALYLDQGLDTVVTILKKVVFPKINEGAFSHVMDFKSQLQEVIQRDGVGQ 208 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 EYKV GP H+ F V ++G G+ SK+ AEQ AA + + Sbjct: 209 LEYKVLQEKGPAHNREFLSRVSLNGEELGVGVGRSKKEAEQKAAQVAITKI 259 >gi|294500965|ref|YP_003564665.1| ribonuclease III [Bacillus megaterium QM B1551] gi|294350902|gb|ADE71231.1| ribonuclease III [Bacillus megaterium QM B1551] Length = 248 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 108/231 (46%), Gaps = 8/231 (3%) Query: 1 MS---ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGL 53 M+ ++ +K IG F N +LL +A THSS + ++ E ERLEFLGD +L L Sbjct: 12 MNVKFKQNFAEFQKEIGIQFTNEALLFQAFTHSSYVNEHRRRPYEDNERLEFLGDAVLEL 71 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +S LF + + EGEL+ ++V + A E+D + + + Sbjct: 72 TVSQFLFKKYPTMSEGELTKLRAAVVCEPSLVTFANEMDFGKLVLLGKGEEMTGGRSRPA 131 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVT 172 + ADV E+ I ALYLD G++ T + K + + D K++LQE Sbjct: 132 LLADVFEAFIGALYLDQGLDTVVTILKKVVFPKINEGAFSHVMDFKSQLQEVIQRDGVGQ 191 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 EYKV GP H+ F V ++G G+ SK+ AEQ AA + + Sbjct: 192 LEYKVLQEKGPAHNREFLSRVSLNGEELGVGVGRSKKEAEQKAAQVAITKI 242 >gi|190891073|ref|YP_001977615.1| ribonuclease III protein [Rhizobium etli CIAT 652] gi|218515110|ref|ZP_03511950.1| ribonuclease III [Rhizobium etli 8C-3] gi|238692512|sp|B3PUN8|RNC_RHIE6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|190696352|gb|ACE90437.1| ribonuclease III protein [Rhizobium etli CIAT 652] gi|327191322|gb|EGE58355.1| ribonuclease III protein [Rhizobium etli CNPAF512] Length = 239 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 131/222 (59%), Positives = 169/222 (76%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE IG+ FA + L++ALTH+S +YERLEFLGDR+LGL I+ LLF F Sbjct: 11 DRAKLESLIGHDFAEKERLDRALTHASARTEKGSNYERLEFLGDRVLGLCIAELLFRTFG 70 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +A EGELSVR N LVSAETC+ VA EL+L +IR +D++K M +++ADVVESLIA Sbjct: 71 TAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVESLIA 130 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG+EVA F+ +YW+ RA+++ +RDAKTELQEW+HAKFGVTP Y+V RSGPD Sbjct: 131 AIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPLYRVDERSGPD 190 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 HDPRF V VE++G+ P G++ SKRAAEQVAA ++L+REGIW Sbjct: 191 HDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232 >gi|299536778|ref|ZP_07050086.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1] gi|298727790|gb|EFI68357.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1] Length = 254 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 ++ L+ + F N++LL +A THSS + ++ ERLEFLGD +L L +S LF Sbjct: 22 QFELLQHELNITFINKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EGEL+ S+V + A EL F+ + ++ ADV E Sbjct: 82 EKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 S + ALYLD ++ +F+++ + D K++LQE Y++ Sbjct: 142 SFVGALYLDQDLQTVVSFLERVVFPKVEVGAFSHVMDFKSQLQEMVQQTNNGLLHYEIID 201 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V ++G G SK+ AEQ AA ++ Sbjct: 202 EKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAAQCAMRMM 245 >gi|293365563|ref|ZP_06612272.1| ribonuclease III [Streptococcus oralis ATCC 35037] gi|315613276|ref|ZP_07888185.1| ribonuclease III [Streptococcus sanguinis ATCC 49296] gi|291315931|gb|EFE56375.1| ribonuclease III [Streptococcus oralis ATCC 35037] gi|315314511|gb|EFU62554.1| ribonuclease III [Streptococcus sanguinis ATCC 49296] Length = 232 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+KR FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + +D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +VT +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 180 QVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|170754285|ref|YP_001781997.1| ribonuclease III [Clostridium botulinum B1 str. Okra] gi|169119497|gb|ACA43333.1| ribonuclease III [Clostridium botulinum B1 str. Okra] Length = 234 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 6/230 (2%) Query: 1 MSALR--YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLIS 56 M + L+ ++ F N LL+ ALTHSS ++ + YERLEFLGD +L L+IS Sbjct: 1 MKNRQDVLKELQYKLKVYFKNEKLLDVALTHSSYANGKRNIKYYERLEFLGDSVLQLIIS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ ++ KEGEL+ + +V + ++A+ DL ++++S SI A Sbjct: 61 EHLYQKYEDKKEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPE 174 D VES+IAA+YLD G++ A FV K +K+ + D KT LQE +T Sbjct: 121 DCVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTIN 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y++ + GP H RF V I G+ SK+ AEQ AA E LK G Sbjct: 181 YELLKQEGPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230 >gi|159184588|ref|NP_354058.2| ribonuclease III [Agrobacterium tumefaciens str. C58] gi|22654057|sp|Q8UGK2|RNC_AGRT5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|159139890|gb|AAK86843.2| ribonuclease III [Agrobacterium tumefaciens str. C58] Length = 239 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 129/232 (55%), Positives = 164/232 (70%), Gaps = 6/232 (2%) Query: 1 MSALR------YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54 MS + S LE IGY F ++ L++ALTH+S + +YERLEFLGDR+LGL Sbjct: 1 MSKTKPLSADEISRLEALIGYEFKEKARLDRALTHASARSAAAGNYERLEFLGDRVLGLC 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ++ LLF+ F +A EGELSVR N LVSAE+C+ + E+ L +FIR SD++K M ++ Sbjct: 61 VAELLFSTFRNASEGELSVRLNQLVSAESCAAIGDEMGLHNFIRTGSDVKKLTGKAMLNV 120 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 +ADVVESLIA LYLDGG+E + F+ KYW+ RA RRDAKTELQEWAHA+F TP Sbjct: 121 RADVVESLIATLYLDGGLEASRKFILKYWQGRATSVDAGRRDAKTELQEWAHARFAATPA 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 Y+V RSGPDHDP FTV VEI G+ P G++ SKRAAEQVAA +L+REG+W Sbjct: 181 YRVDDRSGPDHDPSFTVTVEIPGVKPETGVERSKRAAEQVAATRLLEREGVW 232 >gi|86152963|ref|ZP_01071168.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13] gi|167006173|ref|ZP_02271931.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176] gi|85843848|gb|EAQ61058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13] Length = 224 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF Sbjct: 1 MKNI--EKLERSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++L+ G E A T + ++ + +D KT+LQE K G TP+Y+ Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 177 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222 >gi|313890255|ref|ZP_07823889.1| ribonuclease III [Streptococcus pseudoporcinus SPIN 20026] gi|313121360|gb|EFR44465.1| ribonuclease III [Streptococcus pseudoporcinus SPIN 20026] Length = 230 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L++ F ++ LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MKKLK-ALLKETFNIVFNDQDLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + S EG+LS + +V E+ + +R ++I++ K +I Sbjct: 60 EYLFKKYPSKPEGDLSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD GIE F+++ + K + + +D KT LQE AK V +Y Sbjct: 120 DLFEAFLGALLLDKGIEDVRLFLNQVMIPQVEKGNFEKVKDYKTSLQEVLQAKGDVQIDY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V SGP H +F V + ++ ++G+ SK+ AEQ AA + L+ Sbjct: 180 QVVKESGPAHAKQFEVAILVNQEIISRGIGKSKKIAEQNAAKKALEHL 227 >gi|288905744|ref|YP_003430966.1| Ribonuclease III [Streptococcus gallolyticus UCN34] gi|306831841|ref|ZP_07464997.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978776|ref|YP_004288492.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732470|emb|CBI14042.1| Ribonuclease III [Streptococcus gallolyticus UCN34] gi|304426039|gb|EFM29155.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178704|emb|CBZ48748.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 228 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M AL + L++ G F +++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MQALD-TKLQRDFGIVFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R FI++ + K +I Sbjct: 60 QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL +D G+E F+++ + K + + +D KT LQE VT +Y Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELLQGHGDVTIDY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +V+ SGP H F V V ++ A +QG+ SK+ AEQ AA L Sbjct: 180 RVSNESGPAHAKVFEVTVYVNDEAKSQGIGRSKKLAEQDAAKNAL 224 >gi|86152331|ref|ZP_01070542.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94] gi|315125039|ref|YP_004067043.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840820|gb|EAQ58071.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94] gi|315018761|gb|ADT66854.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 224 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF Sbjct: 1 MKNI--EKLERSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG+LS +LV+ ++ +++A L+L FI +S + + SI +D +E Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEKNNGGKEKPSILSDALE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++L+ G E A T + ++ + +D KT+LQE K G TP+Y+ Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 177 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222 >gi|153951733|ref|YP_001398912.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97] gi|189043301|sp|A7H5Y2|RNC_CAMJD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|152939179|gb|ABS43920.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97] Length = 225 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF Sbjct: 1 MKNI--EKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E Sbjct: 57 HKFTKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++L+ G E A T + ++ + +D KT+LQE K G TP+Y+ Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLMEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 177 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222 >gi|90101642|sp|Q57LD0|RNC_SALCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 226 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD +E Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTME 117 Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G HD FT+ ++SGL P G S+R AEQ AA +VLK+ Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQVLKKL 223 >gi|62181146|ref|YP_217563.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128779|gb|AAX66482.1| RNase III, ds RNA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715636|gb|EFZ07207.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 245 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 20 MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD +E Sbjct: 77 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTME 136 Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G HD FT+ ++SGL P G S+R AEQ AA +VLK+ Sbjct: 197 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQVLKKL 242 >gi|15964825|ref|NP_385178.1| ribonuclease III [Sinorhizobium meliloti 1021] gi|307300895|ref|ZP_07580664.1| ribonuclease III [Sinorhizobium meliloti BL225C] gi|307320712|ref|ZP_07600124.1| ribonuclease III [Sinorhizobium meliloti AK83] gi|22654067|sp|Q92R47|RNC_RHIME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|15074004|emb|CAC45651.1| Probable ribonuclease III [Sinorhizobium meliloti 1021] gi|306893639|gb|EFN24413.1| ribonuclease III [Sinorhizobium meliloti AK83] gi|306903850|gb|EFN34436.1| ribonuclease III [Sinorhizobium meliloti BL225C] Length = 238 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 131/225 (58%), Positives = 164/225 (72%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + + LE IGY FA + L++ALTHSS +Y+RLEFLGDR+LGL ++ LLF Sbjct: 7 NTEDRARLEAAIGYRFAEKERLDRALTHSSARSGRAINYQRLEFLGDRVLGLCVAELLFQ 66 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A EGELSVR N LVSAE+C++VA EL L FIR SD++K M +++ADVVES Sbjct: 67 TFTDANEGELSVRLNQLVSAESCAKVADELSLHEFIRTGSDVKKITGKHMMNVRADVVES 126 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LIAA+YLDGG++ A FV ++W RA + RRDAKTELQEWAHAKFGV P+Y+ RS Sbjct: 127 LIAAIYLDGGLDAARRFVLEHWTHRAASADGARRDAKTELQEWAHAKFGVAPKYRTDDRS 186 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDHDPRFTV VE+ G+AP G+D SKR AEQVAA ++L+REG+W Sbjct: 187 GPDHDPRFTVTVEVDGIAPETGVDRSKRGAEQVAAMKLLEREGVW 231 >gi|86357028|ref|YP_468920.1| ribonuclease III [Rhizobium etli CFN 42] gi|123512466|sp|Q2KAE3|RNC_RHIEC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|86281130|gb|ABC90193.1| ribonuclease III protein [Rhizobium etli CFN 42] Length = 239 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 131/222 (59%), Positives = 169/222 (76%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE IG+ FA + L++ALTH+S +YERLEFLGDR+LGL I+ LLF F Sbjct: 11 DRAKLEALIGHDFAEKERLDRALTHASARTEKGSNYERLEFLGDRVLGLCIAELLFRTFG 70 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +A EGELSVR N LVSAETC+ VA EL+L +IR +D++K M +++ADVVESLIA Sbjct: 71 TAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVESLIA 130 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG+EVA F+ +YW+ RA+++ +RDAKTELQEW+HAKFGVTP Y+V RSGPD Sbjct: 131 AIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDERSGPD 190 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 HDPRF V VE++G+ P G++ SKRAAEQVAA ++L+REGIW Sbjct: 191 HDPRFRVTVEVAGIKPESGVERSKRAAEQVAATKMLEREGIW 232 >gi|209548601|ref|YP_002280518.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226741375|sp|B5ZW73|RNC_RHILW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|209534357|gb|ACI54292.1| Ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 239 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 131/222 (59%), Positives = 169/222 (76%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE IG+ FA + L++ALTH+S +YERLEFLGDR+LGL I+ LLF F Sbjct: 11 DRAKLEGLIGHDFAEKERLDRALTHASARTEKGGNYERLEFLGDRVLGLCIAELLFRTFG 70 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +A EGELSVR N LVSAETC+ VA EL+L +IR +D++K M +++ADVVESLIA Sbjct: 71 TAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVESLIA 130 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG+EVA F+ +YW+ RA+++ +RDAKTELQEW+HAKFGVTP Y+V RSGPD Sbjct: 131 AIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPNYRVDERSGPD 190 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 HDPRF V VE++G+ P G++ SKRAAEQVAA ++L+REGIW Sbjct: 191 HDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232 >gi|270292630|ref|ZP_06198841.1| ribonuclease III [Streptococcus sp. M143] gi|270278609|gb|EFA24455.1| ribonuclease III [Streptococcus sp. M143] Length = 232 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 110/227 (48%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+KR FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEVGDFEMITDYKTHLQELLQVNGDVDIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +VT GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 180 QVTSEMGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|157415855|ref|YP_001483111.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116] gi|283957021|ref|ZP_06374493.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336] gi|189043300|sp|A8FNU7|RNC_CAMJ8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157386819|gb|ABV53134.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116] gi|283791522|gb|EFC30319.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336] gi|307748491|gb|ADN91761.1| Ribonuclease 3 [Campylobacter jejuni subsp. jejuni M1] gi|315931680|gb|EFV10641.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 327] Length = 224 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF Sbjct: 1 MKNI--EKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++L+ G E A T + ++ + +D KT+LQE K G TP+Y+ Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 177 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222 >gi|167771632|ref|ZP_02443685.1| hypothetical protein ANACOL_03004 [Anaerotruncus colihominis DSM 17241] gi|167666272|gb|EDS10402.1| hypothetical protein ANACOL_03004 [Anaerotruncus colihominis DSM 17241] Length = 232 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 115/222 (51%), Gaps = 5/222 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63 S LE RIGY F N L+ ALTHSS ++ +++ ER EFLGD +L +++S LF+ + Sbjct: 11 SALEGRIGYTFQNGRYLDIALTHSSYANEVKKNISSNERQEFLGDAVLSIVVSDYLFHTY 70 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EG+L+ +LV ++ + ++ L L F+++ SI AD E+LI Sbjct: 71 HLA-EGDLTKLRAALVCEKSLWEFSQALGLGDFLKLGRGEEMMGGRTRPSILADAFEALI 129 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AA+YLDGGIE A FV Y D KT LQE Y + SG Sbjct: 130 AAIYLDGGIEPARRFVLGYIVDALENRDDLAFSDYKTMLQEIIQKNPEERLSYVLVNESG 189 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH+ +F V V ++ G SK++AEQ AA E LK G Sbjct: 190 PDHNKKFLVEVRLNSNVIGVGCGGSKKSAEQAAAREALKLMG 231 >gi|254797243|ref|YP_003082085.1| ribonuclease III [Neorickettsia risticii str. Illinois] gi|254590493|gb|ACT69855.1| ribonuclease III [Neorickettsia risticii str. Illinois] Length = 222 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 3/224 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L+ +G F N+ LL +ALTH S+ SYERLEFLGD +L L+++++L++ F Sbjct: 1 MELEELQSLLGVHFKNKELLVEALTHPSV--EKCPSYERLEFLGDAVLNLVVASMLYDLF 58 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS R + LV + +AR+++L IR+SS T+ +V+E+LI Sbjct: 59 PGDPEGRLSQRQSVLVCKTALAMLARQMNLGDCIRLSSSEEASGGRDKTNNLENVLEALI 118 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++LD G E F+ K+W + A++S + K+ LQE AK P Y V RSGP Sbjct: 119 GAIFLDAGFETVTCFIQKHWYELAVQSDSIEPNPKSALQELLQAKGMKPPVYNVIDRSGP 178 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 H P F V + + G + SK+ E+ AA +L+ T Sbjct: 179 AHLPIFEVEICVDGKKR-RATGRSKKLGEENAARMMLEELKAET 221 >gi|116251277|ref|YP_767115.1| ribonuclease III [Rhizobium leguminosarum bv. viciae 3841] gi|189043336|sp|Q1MJ54|RNC_RHIL3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|115255925|emb|CAK07006.1| putative ribonuclease III [Rhizobium leguminosarum bv. viciae 3841] Length = 239 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 131/222 (59%), Positives = 169/222 (76%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE IG+ FA + L++ALTH+S +YERLEFLGDR+LGL I+ LLF F Sbjct: 11 DRAKLEGLIGHDFAEKERLDRALTHASARTEKGGNYERLEFLGDRVLGLCIAELLFRTFG 70 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +A EGELSVR N LVSAETC+ VA EL+L +IR +D++K M +++ADVVESLIA Sbjct: 71 TAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVESLIA 130 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG+EVA F+ +YW+ RA+++ +RDAKTELQEW+HAKFGVTP Y+V RSGPD Sbjct: 131 AIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDERSGPD 190 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 HDPRF V VE++G+ P G++ SKRAAEQVAA ++L+REGIW Sbjct: 191 HDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232 >gi|86149260|ref|ZP_01067491.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596211|ref|ZP_01099448.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25] gi|218563224|ref|YP_002345004.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|22654076|sp|Q9PM40|RNC_CAMJE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|85840042|gb|EAQ57300.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191052|gb|EAQ95024.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25] gi|112360931|emb|CAL35732.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926829|gb|ADC29181.1| ribonuclease III [Campylobacter jejuni subsp. jejuni IA3902] gi|315927617|gb|EFV06948.1| ribonuclease III [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315928870|gb|EFV08132.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 305] Length = 224 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF Sbjct: 1 MKNI--EKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++L+ G E A T + ++ + +D KT+LQE K G TP+Y+ Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 177 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222 >gi|302670933|ref|YP_003830893.1| ribonuclease III Rnc [Butyrivibrio proteoclasticus B316] gi|302395406|gb|ADL34311.1| ribonuclease III Rnc [Butyrivibrio proteoclasticus B316] Length = 230 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 115/223 (51%), Gaps = 5/223 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57 + ++ IGY F N LL +ALTHSS + + YERLEFLGD IL ++ S Sbjct: 3 NEQEIINFQQVIGYKFKNIDLLIQALTHSSFVNEQKINKKPDYERLEFLGDAILEMVSSE 62 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + KEGE+S SLV + A ++L +I++ SI AD Sbjct: 63 YLFKKYPDKKEGEMSKIRASLVCEPALAFCAEHIELKKYIQLGKGEELTGGRNKESIIAD 122 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 V+E++I AL+LDGG++ + F+D Y S D+K+ LQE+ A +Y++ Sbjct: 123 VMEAVIGALFLDGGLQESKRFIDTYVL-TNADSMAMFNDSKSLLQEFVQAGGLGQIKYEI 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SGP+HD F V V I +G +K+AAEQ AA + L Sbjct: 182 CGESGPEHDKIFDVRVWIGDKNMGEGTGKTKKAAEQKAAYQAL 224 >gi|225868184|ref|YP_002744132.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus] gi|259646553|sp|C0MCR4|RNC_STRS7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|225701460|emb|CAW98596.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus] Length = 230 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L + LE F ++ LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MKKLE-ALLENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG++S +++V E+ + +R ++I++ K +I Sbjct: 60 EYLFAKYPKQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGKGEEKSGGRHRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD GIE F+++ + + + + +D KT LQE AK V +Y Sbjct: 120 DLFEAFLGALLLDKGIEEVRRFLNQVMIPQVEQGTFEKVKDYKTCLQELLQAKGDVVIDY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V +GP H +F V V + ++G SK+ AEQ AA L + Sbjct: 180 QVISETGPAHAKQFEVAVLVDEDRLSKGTGRSKKLAEQDAAKNALAQL 227 >gi|153930813|ref|YP_001384630.1| ribonuclease III [Clostridium botulinum A str. ATCC 19397] gi|153937224|ref|YP_001388147.1| ribonuclease III [Clostridium botulinum A str. Hall] gi|153940610|ref|YP_001391753.1| ribonuclease III [Clostridium botulinum F str. Langeland] gi|168180664|ref|ZP_02615328.1| ribonuclease III [Clostridium botulinum NCTC 2916] gi|226949808|ref|YP_002804899.1| ribonuclease III [Clostridium botulinum A2 str. Kyoto] gi|152926857|gb|ABS32357.1| ribonuclease III [Clostridium botulinum A str. ATCC 19397] gi|152933138|gb|ABS38637.1| ribonuclease III [Clostridium botulinum A str. Hall] gi|152936506|gb|ABS42004.1| ribonuclease III [Clostridium botulinum F str. Langeland] gi|182668630|gb|EDT80609.1| ribonuclease III [Clostridium botulinum NCTC 2916] gi|226841844|gb|ACO84510.1| ribonuclease III [Clostridium botulinum A2 str. Kyoto] gi|295319777|gb|ADG00155.1| ribonuclease III [Clostridium botulinum F str. 230613] gi|322806720|emb|CBZ04289.1| ribonuclease III [Clostridium botulinum H04402 065] Length = 234 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 6/230 (2%) Query: 1 MSALR--YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLIS 56 M + L+ ++ F N LL+ ALTHSS ++ + YERLEFLGD +L L+IS Sbjct: 1 MKNRQDVLKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIIS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ ++ KEGEL+ + +V + ++A+ DL ++++S SI A Sbjct: 61 EHLYQKYEDKKEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPE 174 D VES+IAA+YLD G++ A FV K +K+ + D KT LQE +T Sbjct: 121 DCVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTIN 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y++ + GP H RF V I G+ SK+ AEQ AA E LK G Sbjct: 181 YELLKQEGPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230 >gi|322375351|ref|ZP_08049864.1| ribonuclease III [Streptococcus sp. C300] gi|321279614|gb|EFX56654.1| ribonuclease III [Streptococcus sp. C300] Length = 232 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 111/227 (48%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+KR FA++ LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKKRFAIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPRKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + +D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +VT +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 180 QVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|148925776|ref|ZP_01809464.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486] gi|145845786|gb|EDK22877.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486] Length = 229 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF Sbjct: 5 MMK-NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 61 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E Sbjct: 62 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALE 121 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++L+ G E A T + ++ + +D KT+LQE K G TP+Y+ Sbjct: 122 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 182 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 227 >gi|27904735|ref|NP_777861.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29427422|sp|P59476|RNC_BUCBP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|27904132|gb|AAO26966.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 226 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L+K +GY F + LL +ALTH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNHTVIQKLQKILGYTFIKKDLLIQALTHRSA---NSKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++A E DL ++++ K SI A+ VE Sbjct: 58 HCFPHVNEGDMSRMRATLVRGHTLAKIAYEFDLGDYLQLGQGELKSGGFRRESILANTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI +++LD ++ + K++K R A+ ++D KT LQE+ +K P Y V Sbjct: 118 ALIGSIFLDSNLKTIEKLILKWYKNRLKAINPSDTQKDPKTRLQEYLQSKHLPLPSYLVE 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ FT+ EISG+ G+ S+R AEQ AA L + GI Sbjct: 178 QVYGEAHNQLFTIYCEISGINEKTIGIGSSRRKAEQEAAQNALIKLGI 225 >gi|225180933|ref|ZP_03734381.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1] gi|225168414|gb|EEG77217.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1] Length = 233 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 108/229 (47%), Gaps = 6/229 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L K++ NR + +ALTHSS +H + ERLEFLGD +L L+IS Sbjct: 1 MGKKDLNYLFKQLNIEPKNREIYIQALTHSSYAHEHNLGSHAHNERLEFLGDAVLELVIS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F EG+L+ +V ++ ++A L+L ++R+ S+ A Sbjct: 61 EALFKRFPLLPEGKLTRFRAGMVCEDSLFKIANSLELGKYLRLGKGEAASGGRQRPSLLA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPE 174 D E+++ A+YLD G V V + K R D KT +QE+ A TPE Sbjct: 121 DAFEAMLGAMYLDQGFYVVQETVTGIFAPLFEDMAKGSMRHDYKTLMQEYTQASLATTPE 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y++ GPDH F + ++ +G SK+ AEQ AA ++ Sbjct: 181 YRIVAEQGPDHSKVFVAQLLLNREVYGEGSGRSKKEAEQEAARVAYQQL 229 >gi|319898692|ref|YP_004158785.1| ribonuclease III [Bartonella clarridgeiae 73] gi|319402656|emb|CBI76202.1| ribonuclease III [Bartonella clarridgeiae 73] Length = 234 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 114/226 (50%), Positives = 148/226 (65%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LE+ ++F + L+KALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 1 MKHQIIDQLERLTEHSFKDADKLKKALTHSSVQSSEQGNYERLEFLGDRVLGLLIAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +A E+ L + IRV +++ + ++ ADV+E Sbjct: 61 QIFPQASEGELSVRLNGLVNAQTCADIALEMGLPNMIRVGCEMKNLEGRRLANMYADVIE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YL+GG+E F+ KYW+ RA K RRDAKTELQEWAH K P Y+V R Sbjct: 121 ALIAVIYLEGGLESVRPFIQKYWQNRAKKMNAGRRDAKTELQEWAHTKDRAHPHYQVLQR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDHDP F V V I G A G SKR AE+ AA +L+REGIW Sbjct: 181 CGPDHDPIFVVEVSICGFASEIGRGSSKRQAERDAAERILRREGIW 226 >gi|224582877|ref|YP_002636675.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467404|gb|ACN45234.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 245 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 20 MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 77 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 136 Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G HD FT+ ++SGL P G S+R AEQ AA +VLK+ Sbjct: 197 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQVLKKL 242 >gi|16803845|ref|NP_465330.1| ribonuclease III [Listeria monocytogenes EGD-e] gi|224501394|ref|ZP_03669701.1| ribonuclease III [Listeria monocytogenes FSL R2-561] gi|22654060|sp|Q8Y691|RNC_LISMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|16411259|emb|CAC99883.1| rncS [Listeria monocytogenes EGD-e] Length = 229 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ ++ L++ +G+ F N LL++A THSS + ++ + ERLEFLGD +L L +S Sbjct: 1 MN--QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LFN + EG ++ ++V + + A + + ++R+ K ++ A Sbjct: 59 DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 DV ES I ALYLD GI+ TF+++ + D KT+LQE V EY Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINKL 226 >gi|168184661|ref|ZP_02619325.1| ribonuclease III [Clostridium botulinum Bf] gi|237795890|ref|YP_002863442.1| ribonuclease III [Clostridium botulinum Ba4 str. 657] gi|182672267|gb|EDT84228.1| ribonuclease III [Clostridium botulinum Bf] gi|229262399|gb|ACQ53432.1| ribonuclease III [Clostridium botulinum Ba4 str. 657] Length = 234 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 6/230 (2%) Query: 1 MSALR--YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLIS 56 M + L+ ++ F N LL+ ALTHSS ++ + YERLEFLGD +L L+IS Sbjct: 1 MKNRQDVLKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIIS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ ++ KEGEL+ + +V + ++A+ DL ++++S SI A Sbjct: 61 EHLYQKYEDKKEGELTRKRAIIVCENSLYEIAKRWDLGLYLQMSKGEELTGGRERVSILA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPE 174 D VES+IAA+YLD G++ A FV K +K+ + D KT LQE +T Sbjct: 121 DCVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTIN 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y++ + GP H RF V I G+ SK+ AEQ AA E LK G Sbjct: 181 YELLKQEGPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230 >gi|329116187|ref|ZP_08244904.1| ribonuclease III [Streptococcus parauberis NCFD 2020] gi|326906592|gb|EGE53506.1| ribonuclease III [Streptococcus parauberis NCFD 2020] Length = 230 Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 115/229 (50%), Gaps = 6/229 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L L+ FA+R+LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MKKLEV-LLKDSFDITFADRNLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + + EG++S + + +V E+ + +R ++I++ K +I Sbjct: 60 EYLFEKYPNKAEGDMSKQRSMIVREESLAGFSRFCTFDNYIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD G+E F+ + + K + + D KT LQE ++ + +Y Sbjct: 120 DLFEAFLGALLLDKGVEKVRKFLYQVMIPQVEKGTFEQVMDYKTNLQELLQSQGDIIIDY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +V GP HD F V V + +QG SK+ AEQ AA L++ Sbjct: 180 QVISEEGPAHDKVFEVAVLSNEKTLSQGKGKSKKLAEQAAAKNALEQLK 228 >gi|25010800|ref|NP_735195.1| ribonuclease III [Streptococcus agalactiae NEM316] gi|76788414|ref|YP_329471.1| ribonuclease III [Streptococcus agalactiae A909] gi|76798198|ref|ZP_00780449.1| ribonuclease III [Streptococcus agalactiae 18RS21] gi|77406421|ref|ZP_00783480.1| ribonuclease III [Streptococcus agalactiae H36B] gi|77408361|ref|ZP_00785102.1| ribonuclease III [Streptococcus agalactiae COH1] gi|77410795|ref|ZP_00787153.1| ribonuclease III [Streptococcus agalactiae CJB111] gi|77413080|ref|ZP_00789281.1| ribonuclease III [Streptococcus agalactiae 515] gi|81457210|sp|Q8E680|RNC_STRA3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101649|sp|Q3K1Y2|RNC_STRA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101650|sp|Q8E0K7|RNC_STRA5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|23095154|emb|CAD46389.1| Unknown [Streptococcus agalactiae NEM316] gi|76563471|gb|ABA46055.1| ribonuclease III [Streptococcus agalactiae A909] gi|76586461|gb|EAO62968.1| ribonuclease III [Streptococcus agalactiae 18RS21] gi|77160873|gb|EAO71983.1| ribonuclease III [Streptococcus agalactiae 515] gi|77163174|gb|EAO74127.1| ribonuclease III [Streptococcus agalactiae CJB111] gi|77173042|gb|EAO76170.1| ribonuclease III [Streptococcus agalactiae COH1] gi|77174985|gb|EAO77795.1| ribonuclease III [Streptococcus agalactiae H36B] Length = 228 Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 118/228 (51%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M LR S LEK G FAN+ LL+ A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELR-SKLEKDYGIVFANQELLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R +I++ K +I Sbjct: 60 QYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD G+EV FV+K K + + +D KT LQE + V +Y Sbjct: 120 DLFEAFLGALLLDKGVEVVHAFVNKVMIPHVEKGTYERVKDYKTSLQELLQSHGDVKIDY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +VT SGP H F V V ++ +QG+ SK+AAEQ AA L Sbjct: 180 QVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNALATL 227 >gi|322391777|ref|ZP_08065242.1| ribonuclease III [Streptococcus peroris ATCC 700780] gi|321145257|gb|EFX40653.1| ribonuclease III [Streptococcus peroris ATCC 700780] Length = 232 Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ R FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNRFAIEFADQNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDEFIKLGKGEEKSGGRHRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVATVKNFIYTVMIPKVETGDFEMITDYKTHLQELLQVNGDVDICY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +VT +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 180 QVTSETGPAHDKIFEVEVLVEGTSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|111073612|emb|CAL29457.1| Ribonuclease III [Wolbachia endosymbiont of Onchocerca volvulus] Length = 243 Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 122/228 (53%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L T+ + I Y F N S+L++ALTH S++ E+YERLEFLGD IL +++S Sbjct: 9 MQNLN-DTISEIINYRFKNYSILKEALTHPSLNKRNSKNQIENYERLEFLGDSILNMVVS 67 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 T+LF F KEG L+ R LV T + VA+ + L FI + + R + + Sbjct: 68 TILFKLFPKEKEGRLAKRKTDLVCGSTIANVAKVIKLGDFIIMDNSERCNGGKYNLKNLE 127 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + +E+LI A+Y+DGG FV +YW++ A +D KT LQEW P+Y+ Sbjct: 128 NALEALIGAIYIDGGFRNVERFVTQYWEKLAKYMLNPPQDPKTSLQEWTQKNKLPLPKYE 187 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + ++GP H+P FT+ V I SK+ AEQ AA ++ + Sbjct: 188 LKKQTGPAHNPEFTISVYIKNYGRVSACASSKKVAEQKAAELMIGKIN 235 >gi|332523874|ref|ZP_08400126.1| ribonuclease III [Streptococcus porcinus str. Jelinkova 176] gi|332315138|gb|EGJ28123.1| ribonuclease III [Streptococcus porcinus str. Jelinkova 176] Length = 230 Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L++ F ++ LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MKKLK-ALLKETFNIVFNDQDLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R ++I++ K +I Sbjct: 60 EYLFKKYPHKPEGDLSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD GIE Q + + +D KT LQE AK V +Y Sbjct: 120 DLFEAFLGALLLDKGIEEVRLFLNQVMISQVEKGNFEKVKDYKTGLQEVLQAKGDVQIDY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V SGP H +F V + ++ ++G+ SK+ AEQ AA + L+ Sbjct: 180 QVVKESGPAHAKQFEVAILVNQEVISRGIGKSKKIAEQNAAKKALEHL 227 >gi|305674324|ref|YP_003865996.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23] gi|305412568|gb|ADM37687.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23] Length = 249 Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 108/224 (48%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS LF Sbjct: 19 QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLF 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+L+ ++V + +A EL + + ++ ADV E Sbjct: 79 AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G+E +F+ Y + D K++LQE+ + EYK+T Sbjct: 139 AFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQLQEYVQRDGKGSLEYKITN 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F +V + G G SK+ AEQ AA E L + Sbjct: 199 EKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAKL 242 >gi|238897755|ref|YP_002923434.1| RNase III, ds RNA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259491902|sp|C4K3Z3|RNC_HAMD5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|229465512|gb|ACQ67286.1| RNase III, ds RNA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 226 Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+++ ++LE ++ Y+F RSLL +ALTH S+ + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNSININSLELKLRYSFKERSLLLQALTHRSL---HTQHNERLEFLGDSILSFVIANQLY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG +S +LV +T +++ARE D+ +++++ K + SI AD +E Sbjct: 58 HRFPEINEGNMSRMRATLVRGDTLTEIAREFDIGAYLQLGQGELKTGGAQRESILADSIE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++LD I+ + +++ +R + ++D KT LQE+ + P Y + Sbjct: 118 AIIGAIFLDSDIQTVEKTILRWYHKRLEQINPTHHQKDPKTRLQEYMQSHQLPLPFYLLA 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G HD FT+ ++SG G ++R AEQ AA + LK+ Sbjct: 178 QVCGEAHDQEFTIHCQVSGLEELVVGKGSNRRKAEQEAAEKTLKKL 223 >gi|242309254|ref|ZP_04808409.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489] gi|239524295|gb|EEQ64161.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489] Length = 224 Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 114/223 (51%), Gaps = 4/223 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + ++ ++ +GY F N++LL++ALTH S S ERLEFLGD +L L+I L+ F Sbjct: 1 MDFNHFQQTLGYHFKNQNLLKEALTHKSAKKST--HNERLEFLGDAVLDLIIGEFLYKKF 58 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S+ EGELS S+V+ + +++AR L + ++ +S ++ SI ++ E++I Sbjct: 59 PSSPEGELSKMRASMVNEKAFAKIARYLGIGEYLFISHSEEQNHGRDKDSILSNAFEAII 118 Query: 124 AALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YL+ G+E + D KT LQE A FGV PEY V Sbjct: 119 GAIYLESGLEKVQKIVLKILEILYPKIDIQHLFYDHKTSLQELTQALFGVIPEYVVLDSK 178 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH+ F + V I G A SK+ A+Q A L+ Sbjct: 179 GPDHNKEFLIGVFIQGKEYAHASGKSKKEAQQNCAKIALEILK 221 >gi|291563451|emb|CBL42267.1| RNAse III [butyrate-producing bacterium SS3/4] Length = 226 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 114/219 (52%), Gaps = 5/219 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIST 57 + L++ IGY F + LL ALTHSS ++ ERLEFLGD +L ++ S Sbjct: 1 MKEKLEKLQEMIGYQFKDPGLLTHALTHSSYANEKHWDKTRCNERLEFLGDAVLEVISSD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF+ ++S EGE++ SLV T + A + L ++ + S+ +D Sbjct: 61 FLFHTYESMPEGEMTKLRASLVCEPTLAYCADVIPLGDYLLLGKGEDLTGGRKRPSVVSD 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E++I A+YLDGG+ A F+ ++ + D+KT LQE AK+ T Y++ Sbjct: 121 AMEAVIGAIYLDGGLANAKEFIHRFILNDIEHK-QLFYDSKTILQEMVQAKYKETLVYEL 179 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH+ F V V+I +G+ +K+AAEQVAA Sbjct: 180 LKEEGPDHNKSFEVCVKIGDEEIGRGLGRTKKAAEQVAA 218 >gi|148380412|ref|YP_001254953.1| ribonuclease III [Clostridium botulinum A str. ATCC 3502] gi|148289896|emb|CAL84004.1| putative ribonuclease III [Clostridium botulinum A str. ATCC 3502] Length = 237 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 117/223 (52%), Gaps = 4/223 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63 L+ ++ F N LL+ ALTHSS ++ + YERLEFLGD +L L+IS L+ + Sbjct: 11 LKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKY 70 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + KEGEL+ + +V + ++A+ DL ++++S SI AD VES+I Sbjct: 71 EDKKEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESII 130 Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A FV K +K+ + D KT LQE +T Y++ + Sbjct: 131 AAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTINYELLKQE 190 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H RF V I G+ SK+ AEQ AA E LK G Sbjct: 191 GPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 233 >gi|307276679|ref|ZP_07557797.1| ribonuclease III [Enterococcus faecalis TX2134] gi|306506789|gb|EFM75941.1| ribonuclease III [Enterococcus faecalis TX2134] Length = 243 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 110/228 (48%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L++R G F + +LLE+A THSS + ++ ERLEFLGD +L L++S Sbjct: 14 MDNQLTTELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVS 73 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ F EG+L+ ++V ++ ++ A+E ++I + S+ Sbjct: 74 QYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLC 133 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD + A F++ + D KT+LQE K V+ EY Sbjct: 134 DLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHELDHKTQLQEVLQRKGDVSIEY 193 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ GP HD F V ++G G SK+ AEQ AA LK Sbjct: 194 RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSI 241 >gi|302036171|ref|YP_003796493.1| ribonuclease III [Candidatus Nitrospira defluvii] gi|300604235|emb|CBK40567.1| Ribonuclease III [Candidatus Nitrospira defluvii] Length = 234 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 119/227 (52%), Gaps = 9/227 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 +++ +GY F LLE+ALTH S S+ + ERLEFLGD +L L++S L Sbjct: 7 IEAVQRLLGYRFHQPRLLEEALTHKSYSNERRSRDRTQNERLEFLGDAVLSLVMSEYLAA 66 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F + EG LS LVS + ++ AR + L +R+ S+ AD +E+ Sbjct: 67 EFPGSNEGGLSKLKAHLVSEASLAKAARRMKLGRLLRLGKGEELSKGREKHSLLADALEA 126 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ-----RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 LIAA+YLDGG+E + F + ++ RA ++ D KT+LQE ++ P+Y+ Sbjct: 127 LIAAIYLDGGLEASRKFTLQVLEEELLATRAEQARPGMEDYKTQLQEVCQKRYESLPQYE 186 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH+ F V + I G+ G SK+ AEQ+AA E L + Sbjct: 187 TVRESGPDHEKVFEVELTIQGVMRGIGRGRSKKEAEQMAAKEALTQL 233 >gi|168333987|ref|ZP_02692211.1| Ribonuclease III [Epulopiscium sp. 'N.t. morphotype B'] Length = 239 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 111/221 (50%), Gaps = 6/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + EK+I Y F LL+ ALTHSS ++ ++E ERLEFLGD IL L++S LF Sbjct: 11 LESFEKKIEYTFKRIELLDLALTHSSYANEHREQGVKDNERLEFLGDAILDLIVSEYLFK 70 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + ++EG+LS S+V + ++ + L+L +I + SI AD E+ Sbjct: 71 KYPESQEGDLSKFRASIVCEASLAKAGKRLELGKYILLGHGEEMGGGRDRESIIADAFEA 130 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + A+ +D E T++ K + + K +D KT LQ + Y+V Sbjct: 131 VTGAMLIDSSYEDVKTYLAKTLIEFIKHTSATKLYKDYKTILQIESQKNVNTVIAYEVVE 190 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDH+ F V ++ +G +G +KR AEQVAA + L Sbjct: 191 EKGPDHEKEFVVELKQNGKVIGKGSGRTKRDAEQVAAHQAL 231 >gi|289435148|ref|YP_003465020.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171392|emb|CBH27936.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313632767|gb|EFR99733.1| ribonuclease III [Listeria seeligeri FSL N1-067] gi|313637349|gb|EFS02832.1| ribonuclease III [Listeria seeligeri FSL S4-171] Length = 230 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 113/228 (49%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S Sbjct: 1 MN--KWEELQESVGFDFQDIELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LFN + EG ++ ++V + + A + + ++R+ K ++ A Sbjct: 59 NYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKGEEKAGGRTRPALLA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 DV ES I ALYLD G+E F+++ + D KT+LQE V EY Sbjct: 119 DVFESFIGALYLDNGLEKVVKFLERVIFPKIDAGAYLETVDYKTQLQEIVQRDRDVLIEY 178 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226 >gi|239624036|ref|ZP_04667067.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522067|gb|EEQ61933.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 235 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ LE+RI Y F ++SL +ALTHSS ++ ++ ERLEFLGD +L ++ S Sbjct: 1 MNG-HLKELEERIDYQFKDQSLFSQALTHSSYANEHRLDHSRCNERLEFLGDAVLEIVTS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L++ + + EG+L+ S+V T + A ++ L ++ + S+ + Sbjct: 60 DFLYHKYATLPEGDLTKIRASIVCEPTLAYCAGDIRLGEYLFLGKGEDATGGRGRNSVVS 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LI A+YLDGG A F+ ++ + D+KT LQE ++ Y+ Sbjct: 120 DAMEALIGAIYLDGGFANAKEFIHRFILNDIEHK-QLFYDSKTILQEMVQSRQAEALSYE 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GPDH+ F V +I +GM +K+AAEQVAA + + Sbjct: 179 ILREEGPDHNKSFEVCAKIGDAEIGRGMGRTKKAAEQVAAYNGILKL 225 >gi|22536887|ref|NP_687738.1| ribonuclease III [Streptococcus agalactiae 2603V/R] gi|22533737|gb|AAM99610.1|AE014224_13 ribonuclease III [Streptococcus agalactiae 2603V/R] gi|319744744|gb|EFV97086.1| ribonuclease III [Streptococcus agalactiae ATCC 13813] Length = 236 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 118/228 (51%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M LR S LEK G FAN+ LL+ A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 9 MKELR-SKLEKDYGIVFANQELLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 67 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+LS + +V E+ + +R +I++ K +I Sbjct: 68 QYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTILG 127 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD G+EV FV+K K + + +D KT LQE + V +Y Sbjct: 128 DLFEAFLGALLLDKGVEVVHAFVNKVMIPHVEKGTYERVKDYKTSLQELLQSHGDVKIDY 187 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +VT SGP H F V V ++ +QG+ SK+AAEQ AA L Sbjct: 188 QVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNALATL 235 >gi|15616869|ref|NP_240082.1| ribonuclease III [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681624|ref|YP_002468010.1| ribonuclease III [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682181|ref|YP_002468565.1| ribonuclease III [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471312|ref|ZP_05635311.1| ribonuclease III [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11134313|sp|P57346|RNC_BUCAI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807240|sp|B8D951|RNC_BUCA5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807241|sp|B8D7F5|RNC_BUCAT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|25289216|pir||H84959 ribonuclease III (EC 3.1.26.3) [imported] - Buchnera sp. (strain APS) gi|10038933|dbj|BAB12968.1| ribonuclease III [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621914|gb|ACL30070.1| ribonuclease III [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624467|gb|ACL30622.1| ribonuclease III [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085996|gb|ADP66078.1| ribonuclease III [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086571|gb|ADP66652.1| ribonuclease III [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087152|gb|ADP67232.1| ribonuclease III [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087686|gb|ADP67765.1| ribonuclease III [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 226 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 124/228 (54%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + ++K +GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNHIVTKKIQKVLGYTFTHKDLLKQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 HF EG++S +LV T +++A E DL ++++ K SI A+ VE Sbjct: 58 QHFPYIDEGDMSRMRATLVRGNTLAEIAYEFDLGEYLKLGQGELKSGGFRRESILANTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++YLD I+ + K++++R + G ++D KT LQE+ +K P Y + Sbjct: 118 ALIGSIYLDSNIKTVEELILKWYEKRLEKISPGDTQKDPKTRLQEYLQSKHLSLPLYFIV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ FT+ +IS + G S+R AEQ AA + L + G+ Sbjct: 178 EVYGEAHNQLFTIHCKISTISEYLIGTGSSRRKAEQDAAQKALIKLGV 225 >gi|331266250|ref|YP_004325880.1| ribonuclease III [Streptococcus oralis Uo5] gi|326682922|emb|CBZ00539.1| ribonuclease III [Streptococcus oralis Uo5] Length = 232 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+KR FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + +D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +VT +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 180 QVTSETGPAHDKVFDVEVLVEGRSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|313888515|ref|ZP_07822182.1| ribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845544|gb|EFR32938.1| ribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b] Length = 231 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 111/227 (48%), Gaps = 5/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ LE+++ Y F ++ LLE ALTHSS + + ES ERLEFLGD +LGL+I Sbjct: 1 MTFSNLKNLERKLNYDFKDKGLLETALTHSSYVNENKMKQYESNERLEFLGDAVLGLVIG 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 + +F EG L+ V+ + +A+ L+L FIR +K+ S S A Sbjct: 61 EYFYKNFPKDLEGSLTKMRAESVNEKVLFFIAKGLELGDFIRFGKGEKKNGGSKRESTSA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 D +E+LI A++LD A V + + + K + + + G EY Sbjct: 121 DALEALIGAIFLDSNFNNAKKIVLNLFDEFLKEDAYKLFNVDFKTMLQEEVQRSGQKAEY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K+ GPD+D F + + + +G +K+ ++Q AA E L+R Sbjct: 181 KLVREEGPDNDKTFFTELYLDEVLAGKGSGKTKKESQQEAAREALER 227 >gi|134299915|ref|YP_001113411.1| ribonuclease III [Desulfotomaculum reducens MI-1] gi|189043307|sp|A4J683|RNC_DESRM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|134052615|gb|ABO50586.1| RNAse III [Desulfotomaculum reducens MI-1] Length = 246 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 113/231 (48%), Gaps = 8/231 (3%) Query: 1 MSALR--YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLL 54 MS + L+ R+G+ + N +LL +ALTHSS H + +RLEFLGD +L L+ Sbjct: 1 MSKQDEQANRLKTRLGFKWHNPTLLIQALTHSSCVHENRGHGLCHNQRLEFLGDAVLELI 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 IS L+ F EGEL+ S V + ++VAR LDL +R+ + SI Sbjct: 61 ISEHLYKMFPDRTEGELTKMRASSVCEPSLAKVARGLDLGRCLRMGRGEERSGGRERPSI 120 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVT 172 AD E+L+ A+YLD G+E++ FV + RD KTELQE Sbjct: 121 LADAFEALLGAIYLDQGLEISRHFVLNCLSSIIDDVVAGRLDRDYKTELQEILQQSSPDP 180 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y + SGPDHD FT V G +G SK+ AEQ AA + + Sbjct: 181 LTYTIMDESGPDHDKTFTAGVIYKGKVIGKGSGHSKKEAEQQAAKDAFQHL 231 >gi|313906054|ref|ZP_07839406.1| ribonuclease III [Eubacterium cellulosolvens 6] gi|313469099|gb|EFR64449.1| ribonuclease III [Eubacterium cellulosolvens 6] Length = 228 Score = 152 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 7/224 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLIS 56 M LR LE++ G+ F + S L+ A++HSS ++ ++ ERLEFLGD +L L+ S Sbjct: 1 MKKLR--ELEQKTGHVFNDISWLKLAMSHSSYANEQHLGHRGCNERLEFLGDAVLELVSS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L++ + EG+L+ SLV T + AR + L ++ + S+ + Sbjct: 59 EYLYDTYPEMPEGKLTRLRASLVCEPTLAYDARCIGLPEYLLLGKGEDATGGRKRDSVVS 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+ I A++ DGG E A F+ +Y F D+KT LQE + Y+ Sbjct: 119 DALEATIGAIFKDGGFEEAKKFILRYIMNDVENKQLFH-DSKTRLQEMIQSVTDEELSYQ 177 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + SGPDH+ F V + +G SK+AAEQ AA + + Sbjct: 178 IVAESGPDHEKVFEAEVRLGDKLLGRGTGHSKKAAEQQAAYKAI 221 >gi|227517298|ref|ZP_03947347.1| ribonuclease III [Enterococcus faecalis TX0104] gi|227554519|ref|ZP_03984566.1| ribonuclease III [Enterococcus faecalis HH22] gi|229547475|ref|ZP_04436200.1| ribonuclease III [Enterococcus faecalis TX1322] gi|229548050|ref|ZP_04436775.1| ribonuclease III [Enterococcus faecalis ATCC 29200] gi|256854772|ref|ZP_05560136.1| ribonuclease III [Enterococcus faecalis T8] gi|293385103|ref|ZP_06630929.1| ribonuclease III [Enterococcus faecalis R712] gi|293389076|ref|ZP_06633548.1| ribonuclease III [Enterococcus faecalis S613] gi|307270584|ref|ZP_07551882.1| ribonuclease III [Enterococcus faecalis TX4248] gi|307273593|ref|ZP_07554821.1| ribonuclease III [Enterococcus faecalis TX0855] gi|307284870|ref|ZP_07565026.1| ribonuclease III [Enterococcus faecalis TX0860] gi|307288870|ref|ZP_07568843.1| ribonuclease III [Enterococcus faecalis TX0109] gi|307292116|ref|ZP_07571982.1| ribonuclease III [Enterococcus faecalis TX0411] gi|312902145|ref|ZP_07761405.1| ribonuclease III [Enterococcus faecalis TX0470] gi|312905399|ref|ZP_07764513.1| ribonuclease III [Enterococcus faecalis TX0635] gi|312906714|ref|ZP_07765714.1| ribonuclease III [Enterococcus faecalis DAPTO 512] gi|312910825|ref|ZP_07769661.1| ribonuclease III [Enterococcus faecalis DAPTO 516] gi|312953196|ref|ZP_07772042.1| ribonuclease III [Enterococcus faecalis TX0102] gi|227075305|gb|EEI13268.1| ribonuclease III [Enterococcus faecalis TX0104] gi|227176317|gb|EEI57289.1| ribonuclease III [Enterococcus faecalis HH22] gi|229306839|gb|EEN72835.1| ribonuclease III [Enterococcus faecalis ATCC 29200] gi|229307399|gb|EEN73386.1| ribonuclease III [Enterococcus faecalis TX1322] gi|256710332|gb|EEU25376.1| ribonuclease III [Enterococcus faecalis T8] gi|291077580|gb|EFE14944.1| ribonuclease III [Enterococcus faecalis R712] gi|291081544|gb|EFE18507.1| ribonuclease III [Enterococcus faecalis S613] gi|306496769|gb|EFM66320.1| ribonuclease III [Enterococcus faecalis TX0411] gi|306500142|gb|EFM69486.1| ribonuclease III [Enterococcus faecalis TX0109] gi|306503129|gb|EFM72386.1| ribonuclease III [Enterococcus faecalis TX0860] gi|306509606|gb|EFM78648.1| ribonuclease III [Enterococcus faecalis TX0855] gi|306513165|gb|EFM81799.1| ribonuclease III [Enterococcus faecalis TX4248] gi|310627362|gb|EFQ10645.1| ribonuclease III [Enterococcus faecalis DAPTO 512] gi|310628813|gb|EFQ12096.1| ribonuclease III [Enterococcus faecalis TX0102] gi|310631128|gb|EFQ14411.1| ribonuclease III [Enterococcus faecalis TX0635] gi|311288848|gb|EFQ67404.1| ribonuclease III [Enterococcus faecalis DAPTO 516] gi|311290809|gb|EFQ69365.1| ribonuclease III [Enterococcus faecalis TX0470] gi|315026454|gb|EFT38386.1| ribonuclease III [Enterococcus faecalis TX2137] gi|315028377|gb|EFT40309.1| ribonuclease III [Enterococcus faecalis TX4000] gi|315031785|gb|EFT43717.1| ribonuclease III [Enterococcus faecalis TX0017] gi|315034802|gb|EFT46734.1| ribonuclease III [Enterococcus faecalis TX0027] gi|315145468|gb|EFT89484.1| ribonuclease III [Enterococcus faecalis TX2141] gi|315146605|gb|EFT90621.1| ribonuclease III [Enterococcus faecalis TX4244] gi|315151034|gb|EFT95050.1| ribonuclease III [Enterococcus faecalis TX0012] gi|315152764|gb|EFT96780.1| ribonuclease III [Enterococcus faecalis TX0031] gi|315154690|gb|EFT98706.1| ribonuclease III [Enterococcus faecalis TX0043] gi|315159400|gb|EFU03417.1| ribonuclease III [Enterococcus faecalis TX0312] gi|315161159|gb|EFU05176.1| ribonuclease III [Enterococcus faecalis TX0645] gi|315164397|gb|EFU08414.1| ribonuclease III [Enterococcus faecalis TX1302] gi|315167205|gb|EFU11222.1| ribonuclease III [Enterococcus faecalis TX1341] gi|315171217|gb|EFU15234.1| ribonuclease III [Enterococcus faecalis TX1342] gi|315172944|gb|EFU16961.1| ribonuclease III [Enterococcus faecalis TX1346] gi|315573246|gb|EFU85437.1| ribonuclease III [Enterococcus faecalis TX0309B] gi|315577147|gb|EFU89338.1| ribonuclease III [Enterococcus faecalis TX0630] gi|315581180|gb|EFU93371.1| ribonuclease III [Enterococcus faecalis TX0309A] gi|323479029|gb|ADX78468.1| ribonuclease III [Enterococcus faecalis 62] gi|327536218|gb|AEA95052.1| ribonuclease III [Enterococcus faecalis OG1RF] gi|329575676|gb|EGG57203.1| ribonuclease III [Enterococcus faecalis TX1467] Length = 243 Score = 152 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 110/228 (48%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L++R G F + +LLE+A THSS + ++ ERLEFLGD +L L++S Sbjct: 14 MDNQLTTELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVS 73 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ F EG+L+ ++V ++ ++ A+E ++I + S+ Sbjct: 74 QYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLC 133 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD + A F++ + D KT+LQE K V+ EY Sbjct: 134 DLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHEMDHKTQLQEVLQRKGDVSIEY 193 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ GP HD F V ++G G SK+ AEQ AA LK Sbjct: 194 RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSI 241 >gi|293391848|ref|ZP_06636182.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952382|gb|EFE02501.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D7S-1] Length = 226 Score = 152 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + L+++I Y F N LL++ALTH S H + ERLEFLGD IL L I LF Sbjct: 1 MKENQLERLQRQINYRFQNIELLKQALTHRSAGH---QHNERLEFLGDAILNLTIGEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ L +I + K SI AD VE Sbjct: 58 HQFPKCNEGELSRMRATLVREPTLALLARDFKLGDYILLGQGELKSGGFRRESILADCVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD + A V ++++ + +K G ++DAKT LQE+ P Y + Sbjct: 118 AIIGAISLDSNLTNATQIVCQWYQNLLKEIKPGDNQKDAKTRLQEYLQGNRLPLPTYNIV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V I G S+R AEQ AA ++L+ I Sbjct: 178 NIQGEAHNQLFIVECSIQNSDRTFIGKGSSRRKAEQAAAEQILQELNI 225 >gi|291278588|ref|YP_003495423.1| ribonuclease III [Deferribacter desulfuricans SSM1] gi|290753290|dbj|BAI79667.1| ribonuclease III [Deferribacter desulfuricans SSM1] Length = 231 Score = 152 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 82/220 (37%), Positives = 119/220 (54%), Gaps = 4/220 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 LE+ IGY F N+SLL +ALTHSS ++ + +YERLEFLGD +L L+++ L Sbjct: 3 NIEELEELIGYRFKNKSLLLEALTHSSYAYEKKLKRNYERLEFLGDSVLQLIVTEYLVIK 62 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + KEG LS + VS + S++A ++ L F+ + SI AD+ ESL Sbjct: 63 YKEFKEGVLSKYRSFFVSEDIISEIALKIRLNDFLMLGKGEIVSGGYTKPSILADIFESL 122 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YLDGG A V + + + D KTELQ+ KFG PEYKV Sbjct: 123 LGAVYLDGGYNEARRIVLMLMSELMDEYIEKGIIIDPKTELQKITQQKFGYIPEYKVLKE 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP+HD FTV ++++ G+ +K+ AE AA++ L Sbjct: 183 EGPEHDKVFTVELKLADGNKFIGVGRNKKKAEIDAASKAL 222 >gi|332799147|ref|YP_004460646.1| Ribonuclease 3 [Tepidanaerobacter sp. Re1] gi|332696882|gb|AEE91339.1| Ribonuclease 3 [Tepidanaerobacter sp. Re1] Length = 238 Score = 152 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 111/226 (49%), Gaps = 6/226 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLF 60 + L++ IG F N + L +A H S+++ YQE+ +RLEFLGD +L L IS L+ Sbjct: 10 QLMILQENIGIQFNNLNTLNQAFIHPSLTNEKEKPYQENNQRLEFLGDAVLELAISEYLY 69 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 H+D EG+++ V + +Q+AR+L L ++ +S SI AD +E Sbjct: 70 RHYDFLTEGQMTKIRAFTVCESSLAQIARQLFLGDYLILSKGEENTGGREKVSILADTLE 129 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+Y+D + F+ K + G++ D KT+LQE Y V Sbjct: 130 ALIGAIYIDKNYKTTYDFIIKNLEAIIFKAIQGEWGTDYKTDLQELLQKFDEDKILYNVV 189 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGPDHD F V V G+ SK+ AEQ AA E L R Sbjct: 190 NESGPDHDKLFCVEVVWKNKILGTGIGKSKKQAEQNAAKEALDRMN 235 >gi|170761820|ref|YP_001787766.1| ribonuclease III [Clostridium botulinum A3 str. Loch Maree] gi|169408809|gb|ACA57220.1| ribonuclease III [Clostridium botulinum A3 str. Loch Maree] Length = 234 Score = 152 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 6/230 (2%) Query: 1 MSALR--YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLIS 56 M + L+ ++ F N LL+ ALTHSS ++ + YERLEFLGD +L L+IS Sbjct: 1 MKNRQDVLKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIIS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ ++ KEGEL+ + +V + ++A+ DL ++++S SI A Sbjct: 61 EHLYQKYEDKKEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPE 174 D VES+IAA+YLD G++ A FV K +K+ + D KT LQE +T Sbjct: 121 DCVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTIN 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y++ + GP H RF V I G+ SK+ AEQ AA E LK G Sbjct: 181 YELLKQEGPPHRRRFFTNVTIDNEIRGTGIGYSKKEAEQNAAREALKNLG 230 >gi|146296620|ref|YP_001180391.1| ribonuclease III [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410196|gb|ABP67200.1| RNAse III [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 224 Score = 152 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 1/221 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +EK++GY F N +LL+ ALTH S +H + YERLEFLGD +L L++S LF HF Sbjct: 2 TDIEKKLGYRFKNPNLLKLALTHKSATHDDKSCYERLEFLGDAVLELVVSKYLFEHFPQL 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V +ET S+VA L+L +I + +K+ SI +DV+E++ + Sbjct: 62 SEGELTNLRATIVCSETLSKVAETLNLKRYIVFGKNEKKEGFEGNKSIWSDVLEAIFGGI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDH 185 +L+ G ++A V + K+ + + + + + + K D+ Sbjct: 122 FLESGFDMAEKIVINLLEPFIKKAAEGKLFYDYKTKLQEFIQREKNVKIKYIDYENFEDN 181 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 RF + I ++G SK+ A+Q AA LK+ G+ Sbjct: 182 LSRFKSELYIGKNKISEGYGNSKKEAQQEAALNALKKLGVI 222 >gi|237807623|ref|YP_002892063.1| ribonuclease III [Tolumonas auensis DSM 9187] gi|237499884|gb|ACQ92477.1| ribonuclease III [Tolumonas auensis DSM 9187] Length = 223 Score = 152 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 121/225 (53%), Gaps = 6/225 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + S LE+++GY F N+ LL +A+TH S + ERLEFLGD IL L+I+ +L++ Sbjct: 1 MNDKLSRLEQKLGYPFQNKDLLVRAITHRSAGSRH---NERLEFLGDSILSLVIAEVLYH 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F + EG++S +LV +T +++ARE L ++ + K SI AD VE+ Sbjct: 58 RFPNVSEGDMSRMRATLVREKTLAELAREFALGDYLILGPGELKSGGYRRESILADTVEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD ++ T + ++ +R ++D KT LQE+ + P Y VT Sbjct: 118 LIGAIYLDSDLDGIRTLMLNWYNERLDSIRPGVEQKDPKTRLQEFLQGRRRPLPTYAVTD 177 Query: 180 RSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223 G H+ +FTV I + A G+ S+R AEQ AA L++ Sbjct: 178 VKGEAHNQQFTVECAIDDIEAAFVGVGSSRRKAEQAAAERALEQL 222 >gi|56417113|ref|YP_154187.1| ribonuclease III [Anaplasma marginale str. St. Maries] gi|81358903|sp|Q5P9U8|RNC_ANAMM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56388345|gb|AAV86932.1| ribonuclease III [Anaplasma marginale str. St. Maries] Length = 232 Score = 152 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 117/228 (51%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRI----GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56 M + +L +I GY F + LL +ALTH +S+ +YERLEFLGD +L + +S Sbjct: 1 MHPVDKKSLALKIYEATGYQFRDLDLLLEALTHPRLSYKSAANYERLEFLGDAVLSMTVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +L+ F EG L+ + +LV ++AR + L I +S R S Sbjct: 61 EMLYRLFPDDDEGCLTRKRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLE 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 + +E+LI A+Y+DGG E +F+ K+W + S +D KT LQEW + P Y Sbjct: 121 NALEALIGAMYMDGGPEAYRSFIHKHWLARAQHMSYTPPQDPKTALQEWVQGRGWAMPLY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K+ +SGP+H P F V V I G SK+ AEQ AA +LK+ Sbjct: 181 KLVSKSGPEHKPVFAVEVSIQEHGNVLGTGSSKKLAEQEAAKLMLKKI 228 >gi|297588527|ref|ZP_06947170.1| ribonuclease III [Finegoldia magna ATCC 53516] gi|297573900|gb|EFH92621.1| ribonuclease III [Finegoldia magna ATCC 53516] Length = 238 Score = 152 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 112/236 (47%), Gaps = 10/236 (4%) Query: 1 MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGL 53 M + LE+++ Y F + +LL A HSS + + S ERLEFLGD +L L Sbjct: 1 MDKARIEKLHELEEKLDYRFTDINLLNLAFFHSSYGNENKSYKDISNERLEFLGDSVLDL 60 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 ++S L+N S KEG ++ + +V ++ S +A+ L+L ++ + S S Sbjct: 61 IVSDFLYNSKSSLKEGAMTKIRSQMVCEKSFSNMAKYLELGKYLMMGHGEFISGGSEKPS 120 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFG 170 + AD E++ A+YLD G E A V+ +K + + D KT LQE Sbjct: 121 VLADTFEAVFGAIYLDSGYESAFKIVENKFKSLFIAEIETKSSFIDYKTMLQENNQKNSR 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 +YK+ GPDHD +F V V L G SK+ AEQ AA L + + Sbjct: 181 DKLKYKIVKEEGPDHDKKFYVDVYEGNLVIGSGFGSSKKHAEQDAARNALIKLRVI 236 >gi|291550077|emb|CBL26339.1| RNAse III [Ruminococcus torques L2-14] Length = 228 Score = 152 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M ++ LE++IGY F ++SL+E+AL HSS ++ E ERLEFLGD +L L+ S Sbjct: 1 MDRVK--ELEQKIGYVFKDKSLIERALMHSSYTNEKHLKKYECNERLEFLGDAVLELVSS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LFN F EGEL+ S+V + + AR++ L ++ + SI + Sbjct: 59 AYLFNEFPKVSEGELTKTRASMVCEPSLAMCARDIGLGDYLLLGKGEEATGGRKRDSITS 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LI A+YLDGG ++ L+ K D+KT LQE A Y+ Sbjct: 119 DAMEALIGAIYLDGGF-TNAKEFIHHFILTDLEDKKLFYDSKTILQEIVQANMTGNVSYE 177 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GPDH+ F V I A +G SK++AEQ AA E + Sbjct: 178 LIDEQGPDHNKIFEVEARIGRKAWGRGKGSSKKSAEQQAAYEAILNL 224 >gi|153009954|ref|YP_001371169.1| ribonuclease III [Ochrobactrum anthropi ATCC 49188] gi|151561842|gb|ABS15340.1| Ribonuclease III [Ochrobactrum anthropi ATCC 49188] Length = 234 Score = 152 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 115/228 (50%), Positives = 157/228 (68%), Gaps = 2/228 (0%) Query: 1 MSALRYST--LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 M++ + LE+R G+ F N L++ALTHSS+ + +YERLEFLGDR+LGL ++ + Sbjct: 1 MASANQAAAILEERTGHRFLNLKRLDRALTHSSVQAPSRANYERLEFLGDRVLGLTVAEM 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF+ F A EGELSVR N+LV+AETC+ +A E+ LA+ I SD++ + +++ADV Sbjct: 61 LFDEFPDASEGELSVRLNALVNAETCAAIADEIGLANLIHTGSDIKSLNDKRLLNVRADV 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 VE+LIA +YLDGG+E FV +YW++R+L++G RRDAKTELQEWAH + V P Y + Sbjct: 121 VEALIATIYLDGGLEAVRPFVKRYWEKRSLQTGAARRDAKTELQEWAHQQGNVHPSYAII 180 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 R+GPDHDP F V V + G A G SKR AEQ AA +L REG+W Sbjct: 181 SRTGPDHDPLFAVEVTVKGFATETGEGRSKRIAEQNAAEAMLYREGVW 228 >gi|261868615|ref|YP_003256537.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413947|gb|ACX83318.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D11S-1] Length = 226 Score = 152 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + L+++I Y F N LL++ALTH S H + ERLEFLGD IL L I LF Sbjct: 1 MKENQLERLQRQINYRFQNIELLKQALTHRSAGH---QHNERLEFLGDAILNLTIGEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ L +I + K SI AD VE Sbjct: 58 HQFPKCNEGELSRMRATLVREPTLALLARDFKLGDYILLGQGELKSGGFRRESILADCVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD + A V ++++ + +K G ++DAKT LQE+ P Y + Sbjct: 118 AIIGAISLDSSLTNATQIVCQWYQNLLKEIKPGDNQKDAKTRLQEYLQGNRLPLPTYNIV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V I G S+R AEQ AA ++L+ I Sbjct: 178 NIQGEAHNQLFIVECSIQNSDRTFIGKGSSRRKAEQAAAEQILQELNI 225 >gi|224500035|ref|ZP_03668384.1| ribonuclease III [Listeria monocytogenes Finland 1988] gi|254831594|ref|ZP_05236249.1| ribonuclease III [Listeria monocytogenes 10403S] gi|284802251|ref|YP_003414116.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578] gi|284995393|ref|YP_003417161.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923] gi|284057813|gb|ADB68754.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578] gi|284060860|gb|ADB71799.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923] Length = 229 Score = 152 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ ++ L++ +G+ F N LL++A THSS + ++ + ERLEFLGD +L L +S Sbjct: 1 MN--QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LFN + EG ++ ++V + + A + + ++R+ K ++ A Sbjct: 59 DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 DV ES I ALYLD GI+ TF+++ + D KT+LQE V EY Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226 >gi|116873240|ref|YP_850021.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466444|sp|A0AJR0|RNC_LISW6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116742118|emb|CAK21242.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334] Length = 229 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S Sbjct: 1 MN--QWEELQESVGFDFQDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LFN + EG ++ ++V + + A + + +IR+ K ++ A Sbjct: 59 NYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAIHFSKYIRLGKGEEKAGGRTRPALLA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 DV ES I ALYLD GI+ TF+++ + D KT+LQE V EY Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGEYLQTVDYKTQLQEIVQRDRDVLIEY 178 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226 >gi|313623280|gb|EFR93523.1| ribonuclease III [Listeria innocua FSL J1-023] Length = 229 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ ++ L++ +G+ F N LL++A THSS + ++ + ERLEFLGD +L L +S Sbjct: 1 MN--QWEELQESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LFN + EG ++ ++V + + A + + ++R+ K ++ A Sbjct: 59 DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 DV ES I ALYLD GI+ TF+++ + D KT+LQE V EY Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 179 DILGETGPAHNKSFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226 >gi|251772101|gb|EES52671.1| Ribonuclease III [Leptospirillum ferrodiazotrophum] Length = 254 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 7/226 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLL 59 LE+R+GY F++ LE+A H S ++ ++ ERLEFLGD +LGL+++ L Sbjct: 10 NLPVLEERLGYRFSSLERLEEATIHKSFTNETKKGGVRRDNERLEFLGDTVLGLVVAEYL 69 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EG LS +VS + +Q+AR + L ++ + SI +D + Sbjct: 70 MRLWPDSPEGVLSKLKGRIVSEPSLAQIARNIGLGRYLLIGRGEEMTQGREKNSILSDAL 129 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++IAA+Y DGG++ A F+ + +++ G+ D KT+LQE+ + P+Y + Sbjct: 130 EAVIAAIYQDGGLDAARQFILREFRELFESVSRGESVADYKTQLQEYCQRELETLPQYVI 189 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T +SGPDH F V V I +G SK+ AEQ AA L+R Sbjct: 190 TGQSGPDHQKVFEVAVRIRDKNWGEGQGHSKKEAEQKAAKSALERI 235 >gi|46908036|ref|YP_014425.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365] gi|47093844|ref|ZP_00231588.1| ribonuclease III [Listeria monocytogenes str. 4b H7858] gi|226224408|ref|YP_002758515.1| ribonuclease III [Listeria monocytogenes Clip81459] gi|254826153|ref|ZP_05231154.1| ribonuclease III [Listeria monocytogenes FSL J1-194] gi|254852713|ref|ZP_05242061.1| ribonuclease III [Listeria monocytogenes FSL R2-503] gi|254933277|ref|ZP_05266636.1| ribonuclease III [Listeria monocytogenes HPB2262] gi|300763882|ref|ZP_07073879.1| ribonuclease III [Listeria monocytogenes FSL N1-017] gi|73917580|sp|Q71YL2|RNC_LISMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|259491903|sp|C1KWA4|RNC_LISMC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|46881306|gb|AAT04602.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365] gi|47017785|gb|EAL08574.1| ribonuclease III [Listeria monocytogenes str. 4b H7858] gi|225876870|emb|CAS05579.1| Putative ribonuclease III [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606034|gb|EEW18642.1| ribonuclease III [Listeria monocytogenes FSL R2-503] gi|293584837|gb|EFF96869.1| ribonuclease III [Listeria monocytogenes HPB2262] gi|293595393|gb|EFG03154.1| ribonuclease III [Listeria monocytogenes FSL J1-194] gi|300515618|gb|EFK42668.1| ribonuclease III [Listeria monocytogenes FSL N1-017] gi|328473534|gb|EGF44371.1| ribonuclease III [Listeria monocytogenes 220] gi|332312246|gb|EGJ25341.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A] Length = 229 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S Sbjct: 1 MN--QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LFN + EG ++ ++V + + A + + ++R+ K ++ A Sbjct: 59 NYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 DV ES I ALYLD GI+ TF+++ + D KT+LQE V EY Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226 >gi|332289238|ref|YP_004420090.1| ribonuclease III [Gallibacterium anatis UMN179] gi|330432134|gb|AEC17193.1| ribonuclease III [Gallibacterium anatis UMN179] Length = 226 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 117/228 (51%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L+ ++ Y F +LL++ALTH S + + ERLEFLGD IL I L+ Sbjct: 1 MNNQHLDRLQNKLSYQFKKMALLQQALTHRSAASEH---NERLEFLGDSILNFTIGEALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F + EG+LS +LV +T +Q+A E DL ++++ K +SI +D VE Sbjct: 58 HQFPKSAEGDLSRMRATLVREQTLAQIAIEFDLGEYLKLGPGELKSGGYRRSSILSDCVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD E + +++QR +K G ++D KT LQE+ P Y V Sbjct: 118 AIIGAIYLDSNFEKVKETILNWYQQRLAEIKPGDNQKDPKTRLQEYLQGIRQPLPTYNVV 177 Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V +I +G+ S+R AEQ AA ++L I Sbjct: 178 EIKGEAHNQTFKVTCKISQSDTLFEGIGSSRRKAEQAAAEKILSALKI 225 >gi|288553095|ref|YP_003425030.1| ribonuclease III [Bacillus pseudofirmus OF4] gi|288544255|gb|ADC48138.1| ribonuclease III [Bacillus pseudofirmus OF4] Length = 263 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 ++ L +I F NR LL +A THSS + ++ + ERLEFLGD +L L +S Sbjct: 32 KKQFDDLLLKIDLTFENRKLLIQAFTHSSYVNEHRIYSFQDNERLEFLGDAVLELAVSQF 91 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ F+S EGE++ S+V + ++ A EL+ + + ++ ADV Sbjct: 92 LYKKFNSMSEGEMTKLRASIVCEPSLARFAEELEFGELVLLGKGEEMTGGRNRPALLADV 151 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKV 177 ES I ALYLD G+E F+ + + D K++LQE+ +Y + Sbjct: 152 FESFIGALYLDQGLEAVYKFLSQTMYPKINDGAFSHMMDFKSQLQEFIQRDNLGQIQYVI 211 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V+++ G SK+ AEQ AA + L + Sbjct: 212 VQEIGPAHNREFVSEVQLNESKLGVGSGRSKKEAEQHAAQQALIKL 257 >gi|225025907|ref|ZP_03715099.1| hypothetical protein EUBHAL_00143 [Eubacterium hallii DSM 3353] gi|224956693|gb|EEG37902.1| hypothetical protein EUBHAL_00143 [Eubacterium hallii DSM 3353] Length = 232 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 123/225 (54%), Gaps = 8/225 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 R+ LE++IGY F N+ L A+THSS ++ + + ERLEFLGD +L + IS +F Sbjct: 6 RFKGLEEKIGYTFTNKRTLALAMTHSSYANEQRGRRKANNERLEFLGDAVLEVTISDYVF 65 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG L+ +SLV T + AR+++L ++ +S SI +D E Sbjct: 66 REYPGYNEGRLTKLRSSLVCEYTLAICARDVELGKYLLLSRGEDATGGRERDSILSDAFE 125 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+YLDGG++ A TF+ + + F DAKT LQE A EY +T Sbjct: 126 ALIGAIYLDGGMDRARTFIHTHLLKDVEDKSLFY-DAKTILQEMVQAGPDPRLEYVLTRE 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKR 222 +GPDH+ FTV +I G A G +K+ AEQ+AA + +LK+ Sbjct: 185 AGPDHNKEFTVEAKIGGKTYAIGKGKTKKGAEQIAAYQTILLLKK 229 >gi|47097388|ref|ZP_00234939.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854] gi|217964043|ref|YP_002349721.1| ribonuclease III [Listeria monocytogenes HCC23] gi|254829200|ref|ZP_05233887.1| ribonuclease III [Listeria monocytogenes FSL N3-165] gi|254899498|ref|ZP_05259422.1| ribonuclease III [Listeria monocytogenes J0161] gi|254912363|ref|ZP_05262375.1| ribonuclease III [Listeria monocytogenes J2818] gi|254936690|ref|ZP_05268387.1| ribonuclease III [Listeria monocytogenes F6900] gi|290893065|ref|ZP_06556054.1| ribonuclease III [Listeria monocytogenes FSL J2-071] gi|254807893|sp|B8DDU8|RNC_LISMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|47014236|gb|EAL05218.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854] gi|217333313|gb|ACK39107.1| ribonuclease III [Listeria monocytogenes HCC23] gi|258601611|gb|EEW14936.1| ribonuclease III [Listeria monocytogenes FSL N3-165] gi|258609286|gb|EEW21894.1| ribonuclease III [Listeria monocytogenes F6900] gi|290557425|gb|EFD90950.1| ribonuclease III [Listeria monocytogenes FSL J2-071] gi|293590344|gb|EFF98678.1| ribonuclease III [Listeria monocytogenes J2818] gi|307571387|emb|CAR84566.1| ribonuclease III [Listeria monocytogenes L99] gi|313608181|gb|EFR84216.1| ribonuclease III [Listeria monocytogenes FSL F2-208] Length = 229 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S Sbjct: 1 MN--QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LFN + EG ++ ++V + + A + + ++R+ K ++ A Sbjct: 59 DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 DV ES I ALYLD GI+ TF+++ + D KT+LQE V EY Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226 >gi|315282805|ref|ZP_07871128.1| ribonuclease III [Listeria marthii FSL S4-120] gi|313613534|gb|EFR87355.1| ribonuclease III [Listeria marthii FSL S4-120] Length = 229 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S Sbjct: 1 MN--QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LFN + EG ++ ++V + + A + + ++R+ K ++ A Sbjct: 59 DYLFNKYPEMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 DV ES I ALYLD GI+ TF+++ + D KT+LQE V EY Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226 >gi|187778952|ref|ZP_02995425.1| hypothetical protein CLOSPO_02547 [Clostridium sporogenes ATCC 15579] gi|187772577|gb|EDU36379.1| hypothetical protein CLOSPO_02547 [Clostridium sporogenes ATCC 15579] Length = 237 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 4/223 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63 L+ ++ F + LL+ ALTHSS ++ + YERLEFLGD +L L+IS L+ + Sbjct: 11 LKELQYKLKVCFKDEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKY 70 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + KEGEL+ + +V + ++A+ DL ++++S SI AD VES+I Sbjct: 71 EDKKEGELTRKRAIIVCENSLYEMAKRWDLGFYLQMSKGEELTGGRERVSILADCVESII 130 Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A FV K +K+ + D KT LQE +T Y++ + Sbjct: 131 AAIYLDKGLDEAREFVMKNFKEIIEKAMRDEIILDYKTTLQEIVQQNNDLTINYELLKQE 190 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H +F V I G+ SK+ AEQ AA E LK G Sbjct: 191 GPPHRRKFFTNVTIDNEVRGTGIGYSKKEAEQNAAKEALKNLG 233 >gi|297584006|ref|YP_003699786.1| ribonuclease III [Bacillus selenitireducens MLS10] gi|297142463|gb|ADH99220.1| ribonuclease III [Bacillus selenitireducens MLS10] Length = 261 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 5/227 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 +Y K + + + ++ +A THSS + ++ + ERLEFLGD +L L IS Sbjct: 26 KAKYKQFLKTLHVPYQDDNVFIQAFTHSSYVNEHRIRPHDDNERLEFLGDAVLELAISQY 85 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF F+ EGE++ ++V + +++A L+ ++ + ++ ADV Sbjct: 86 LFKLFEQMSEGEMTKLRAAIVCEPSLAKLADSLEFGDYVLLGKGEEMTGGRKRPALLADV 145 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ I ALY+D G+E F+++Y + S D K++LQE+ + +Y++ Sbjct: 146 FEAFIGALYVDLGMEAVYDFLERYVYPKIHDGSFSHMMDFKSQLQEFIQRENQGQVQYRI 205 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G+ SK+ AEQ+AA E LK+ G Sbjct: 206 VEEKGPAHAREFVSEVMLDDDQLGTGVGKSKKEAEQMAAQEALKKLG 252 >gi|225870877|ref|YP_002746824.1| ribonuclease III [Streptococcus equi subsp. equi 4047] gi|254807900|sp|C0M8Y3|RNC_STRE4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|225700281|emb|CAW94534.1| ribonuclease III [Streptococcus equi subsp. equi 4047] Length = 230 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L + LE F ++ LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MKKLE-ALLENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG++S +++V E+ + +R ++I++ K +I Sbjct: 60 EYLFAKYPKQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGRGEEKSGGRHRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD GIE F+++ + + + + +D KT LQE AK V +Y Sbjct: 120 DLFEAFLGALLLDKGIEEVRRFLNQVMIPQVEQGTFEKVKDYKTCLQELLQAKGDVVIDY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V +GP H +F V V + ++G SK+ AEQ AA L + Sbjct: 180 QVISETGPAHAKQFEVAVLVGEDHLSKGTGRSKKLAEQDAAKNALAQL 227 >gi|52785573|ref|YP_091402.1| ribonuclease III [Bacillus licheniformis ATCC 14580] gi|163119429|ref|YP_078987.2| ribonuclease III [Bacillus licheniformis ATCC 14580] gi|319646025|ref|ZP_08000255.1| ribonuclease 3 [Bacillus sp. BT1B_CT2] gi|81385589|sp|Q65JQ5|RNC_BACLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|52348075|gb|AAU40709.1| Rnc [Bacillus licheniformis ATCC 14580] gi|145902936|gb|AAU23349.2| ribonuclease III [Bacillus licheniformis ATCC 14580] gi|317391775|gb|EFV72572.1| ribonuclease 3 [Bacillus sp. BT1B_CT2] Length = 249 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 106/227 (46%), Gaps = 5/227 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57 A ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS Sbjct: 16 KAEQFKKFQERISVQFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQ 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ + + EG+L+ ++V + +A EL + + ++ AD Sbjct: 76 FLYAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGELVLLGKGEEMTGGRKRPALLAD 135 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYK 176 V E+ I ALYLD G+E TF+ Y + D K++LQE+ EYK Sbjct: 136 VFEAFIGALYLDQGLEAVVTFLKAYVFPKIDDGAFSHVMDFKSQLQEFVQRDGRGILEYK 195 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GP H+ F V + G G SK+ AEQ AA E L + Sbjct: 196 ILQEKGPAHNREFEANVSLKGEVLGVGSGRSKKEAEQHAAQEALAKL 242 >gi|262277162|ref|ZP_06054955.1| ribonuclease III [alpha proteobacterium HIMB114] gi|262224265|gb|EEY74724.1| ribonuclease III [alpha proteobacterium HIMB114] Length = 225 Score = 151 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 122/225 (54%), Gaps = 1/225 (0%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + +EK + F N+SL+E+A TH S S + + ERLEFLGDR+LGL+I++ L Sbjct: 1 MKKNDLAQVEKILEIKFNNKSLIEQAFTHKSKSVNINNNNERLEFLGDRVLGLVIASYLN 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +++ EG L + SLV+ ETCS++ L++ F+ +S +++ I D+ E Sbjct: 61 DNYPKDSEGVLDKKLASLVNKETCSKIISSLEIDRFLSLSEAQKQNKA-GNKKILGDLCE 119 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 S+I A+++D G E F+ K WK+ + + D KT+LQE++ + P YK Sbjct: 120 SIIGAVFMDKGFEQTKKFILKIWKENLKNTTQVFIDPKTKLQEYSLKLYKKLPVYKYISN 179 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 SGP H P F V V I SK+ AE AA ++++ I Sbjct: 180 SGPSHKPNFRVSVSIEQSKSFVATGTSKKNAETNAAKKLIEYLKI 224 >gi|260881779|ref|ZP_05893556.1| ribonuclease III [Mitsuokella multacida DSM 20544] gi|260847870|gb|EEX67877.1| ribonuclease III [Mitsuokella multacida DSM 20544] Length = 247 Score = 151 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFN 61 + L +R+G F + +LL++ALTH+S ++ + + ERLEFLGD +L L ST L+ Sbjct: 16 QLLVLSERLGVTFHDIALLDQALTHTSYANESKRNTAHNERLEFLGDAVLELASSTYLYE 75 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF EGEL+ S+V + T +++A L L ++ + + DV E+ Sbjct: 76 HFPEMPEGELTKTRASIVCSTTLAKLATGLHLGDYLLLGRGEEMGGGRTRQTNLEDVFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A+YLD G E A +V + + + +D KT LQE K G + Y++ Sbjct: 136 VIGAVYLDQGWEAAQAYVVRQLRGEFENAEHGAILKDYKTILQEIVFRKEGQSIAYELVS 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH FT V ++G +G SK+ AEQ AA L++ Sbjct: 196 ESGPDHAKEFTFRVRVTGKVMGEGTGHSKKEAEQHAARRALEKI 239 >gi|165975962|ref|YP_001651555.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|238687533|sp|B0BUA6|RNC_ACTPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|165876063|gb|ABY69111.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 223 Score = 151 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY F N L +ALTH S ++ ERLEFLGD IL I LF F Sbjct: 1 MQLERLQKKLGYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ L ++++ + K SI +D VE++I Sbjct: 58 PKANEGELSRMRATLVREQTLAILARKFGLGEYMKLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 118 AAIYLDAGMDKAIAQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLNIK 177 Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 178 GEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 220 >gi|296444865|ref|ZP_06886827.1| ribonuclease III [Methylosinus trichosporium OB3b] gi|296257533|gb|EFH04598.1| ribonuclease III [Methylosinus trichosporium OB3b] Length = 233 Score = 151 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 102/223 (45%), Positives = 132/223 (59%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 LE +G+ F NR LLE ALTH S S + ESYERLEFLGDR+LG++++ LL+ Sbjct: 6 RKDLEALEASVGHGFVNRGLLEHALTHVSGSTARTESYERLEFLGDRVLGVVVAHLLYET 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F + EGELS R LV E+C++VA + F+R+ + +I D+ E++ Sbjct: 66 FPAESEGELSRRLADLVRKESCAEVAERWGVGPFMRLGDGEAQTGGRKKRAILGDMCEAI 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I A+YLDGG A V + + R G+ RDAKT LQEWA A+ TP Y++T RSG Sbjct: 126 IGAVYLDGGAAAAEAVVREAFGARMQTQGRRLRDAKTSLQEWAQARRLPTPCYRMTSRSG 185 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 PDH P F V V + G PA+G SKR AEQ AA L REGI Sbjct: 186 PDHAPFFKVEVVVEGFVPAEGGGASKRVAEQSAAQAFLDREGI 228 >gi|187251071|ref|YP_001875553.1| ribonuclease III [Elusimicrobium minutum Pei191] gi|186971231|gb|ACC98216.1| Ribonuclease III [Elusimicrobium minutum Pei191] Length = 221 Score = 151 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 4/220 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + +E+ + Y+F N+ L+ +ALTH S + + + ERLEFLGD +LGL+ + +++ + Sbjct: 3 NDIEQVLDYSFKNKELIREALTHKSFTGERRSVKHNERLEFLGDSVLGLVAAEYIYSKYP 62 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG LS + LVS A ELDL +++ + + SI ++ +E+++ Sbjct: 63 EVEEGVLSKIKSGLVSRHNLYLWASELDLGAYLALGAGEAATGGRTRESILSNAMEAVLG 122 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG E ++K+ + D K+ LQE K+ PEY+V GP+ Sbjct: 123 AVYLDGGFESVKNIINKWIS--TQSLTEVSSDYKSTLQEIVQKKYKSVPEYEVIQTVGPE 180 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H+ FTVVV +G +K+ AEQ AA L+ Sbjct: 181 HEKIFTVVVSSLKKELGRGRGKNKKLAEQDAAKNALENLK 220 >gi|251797476|ref|YP_003012207.1| ribonuclease III [Paenibacillus sp. JDR-2] gi|247545102|gb|ACT02121.1| ribonuclease III [Paenibacillus sp. JDR-2] Length = 231 Score = 151 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 6/229 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L+ R+ F LL++A TH+S + ++ E ERLEFLGD +L LL+S Sbjct: 1 MKRDSINELQTRLQLRFKQLKLLKQAFTHTSYVNEHKHGTIEHNERLEFLGDAVLQLLVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + + EGEL+ S+V + +Q A L+L + I++ + ++ A Sbjct: 61 EYLFAAYPNRPEGELTRMRASVVCEPSLAQFAERLELGAHIQLGRGEEQLGGRQRPALLA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPE 174 D+ E+ + A++LD GIE F++ + G +D K++LQE A K E Sbjct: 121 DLFEAFVGAIFLDAGIERTRAFLETHMFPYIESNDYGLLVKDFKSKLQERAQHKGLGAVE 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y++ GP HD F V V I + G +K+ AEQ AAA + Sbjct: 181 YRIMEERGPAHDREFVVEVCIGEIPYGNGSGRTKKEAEQRAAAVAWQSL 229 >gi|169824545|ref|YP_001692156.1| ribonuclease III [Finegoldia magna ATCC 29328] gi|302380368|ref|ZP_07268838.1| ribonuclease III [Finegoldia magna ACS-171-V-Col3] gi|303233642|ref|ZP_07320296.1| ribonuclease III [Finegoldia magna BVS033A4] gi|167831350|dbj|BAG08266.1| ribonuclease III [Finegoldia magna ATCC 29328] gi|302311858|gb|EFK93869.1| ribonuclease III [Finegoldia magna ACS-171-V-Col3] gi|302495076|gb|EFL54828.1| ribonuclease III [Finegoldia magna BVS033A4] Length = 238 Score = 151 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 113/236 (47%), Gaps = 10/236 (4%) Query: 1 MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGL 53 M + LE+++ Y F + +LL A HSS + + S ERLEFLGD +L L Sbjct: 1 MDKARIEKLHELEEKLDYRFTDINLLNLAFFHSSYGNENKAYKNISNERLEFLGDSVLDL 60 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 ++S L+N S KEG ++ + +V ++ S +A+ L+L ++ + S S Sbjct: 61 VVSDFLYNSKSSLKEGAMTKIRSQMVCEKSFSNMAKYLELGKYLMMGHGEFISGGSEKPS 120 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFG 170 + AD E++ A+YLD G E A V+ +K + + D KT LQE K Sbjct: 121 VLADTFEAVFGAIYLDSGYESAFKIVENKFKSLFIAEIETKSSFIDYKTMLQENNQKKSR 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 +YK+ GPDHD +F V V L G SK+ AEQ AA L + + Sbjct: 181 DKLKYKIVKEEGPDHDKKFYVDVYEGNLVIGSGFGSSKKHAEQDAARNALIKLRVI 236 >gi|269958484|ref|YP_003328271.1| ribonuclease 3 [Anaplasma centrale str. Israel] gi|269848313|gb|ACZ48957.1| ribonuclease 3 [Anaplasma centrale str. Israel] Length = 249 Score = 151 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 114/227 (50%), Gaps = 5/227 (2%) Query: 2 SALRYSTL----EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIST 57 + L + GY F + LL ++LTH S+S +YERLEFLGD +L + +S Sbjct: 6 DNIDKENLACRVYEVTGYRFRDLDLLLESLTHPSLSRESAANYERLEFLGDAVLSMAVSE 65 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +L+ F EG L+ + +LV ++AR + L I +SS S + Sbjct: 66 MLYRLFPDDDEGCLTQKRTALVRGSEVVEIARSIGLGGLILMSSGEMSCGGSDNPGTLEN 125 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 +E+LI A+Y+DG E F+ ++W R S +D KT LQEW ++ P YK Sbjct: 126 ALEALIGAMYIDGSSEDYKNFIREHWFSRAQRMSSAPPQDPKTALQEWVQSRGWTVPLYK 185 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +SGP+H P F V V I G G SK+ AEQ AA +LKR Sbjct: 186 LVSKSGPEHKPVFAVEVSIQGHGSILGTGSSKKLAEQEAAKLMLKRI 232 >gi|224418414|ref|ZP_03656420.1| ribonuclease III [Helicobacter canadensis MIT 98-5491] gi|253827732|ref|ZP_04870617.1| ribonuclease III [Helicobacter canadensis MIT 98-5491] gi|313141944|ref|ZP_07804137.1| ribonuclease III [Helicobacter canadensis MIT 98-5491] gi|253511138|gb|EES89797.1| ribonuclease III [Helicobacter canadensis MIT 98-5491] gi|313130975|gb|EFR48592.1| ribonuclease III [Helicobacter canadensis MIT 98-5491] Length = 224 Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 4/223 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + ++ +GY F+N++LL++ALTH S S ERLEFLGD +L L+I L+ F Sbjct: 1 MDLKDFQQYLGYHFSNQNLLQEALTHKSAKKST--HNERLEFLGDAVLDLIIGEFLYKKF 58 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EGELS S+V+ + +++AR L++ ++ +S ++ SI ++ E+++ Sbjct: 59 PHSPEGELSKMRASMVNEKAFAKIARYLNIGEYLYISHSEEQNNGREKDSILSNAFEAIV 118 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YL+ G+E T V K K D KT LQE A FG+TPEY V Sbjct: 119 GAIYLESGLEKVQTIVLKILDILYPKIDLENLFYDYKTSLQELTQALFGITPEYVVLDSK 178 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH+ F + V I AQ SK+ A+Q A LK Sbjct: 179 GPDHNKEFLMGVFIQNKEYAQAKGKSKKEAQQNCAKIALKILK 221 >gi|91205996|ref|YP_538351.1| ribonuclease III [Rickettsia bellii RML369-C] gi|157826640|ref|YP_001495704.1| ribonuclease III [Rickettsia bellii OSU 85-389] gi|122425284|sp|Q1RHA2|RNC_RICBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043340|sp|A8GYE2|RNC_RICB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|91069540|gb|ABE05262.1| Ribonuclease III [Rickettsia bellii RML369-C] gi|157801944|gb|ABV78667.1| ribonuclease III [Rickettsia bellii OSU 85-389] Length = 227 Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 119/230 (51%), Gaps = 7/230 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIS 56 M + + LEK + Y+F N++LL +AL+H S+ + + YERLEFLGD +L L+I+ Sbjct: 1 MES--FEELEKLLDYSFKNKALLTEALSHPSLRQHHEYKANKDYERLEFLGDAVLNLIIT 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +LFN+F EG L+ + LV ET V +L L ++I ++ + Sbjct: 59 EILFNNFKEYNEGNLAKIRSYLVCKETICVVGAKLGLKNYIIMTHGEEIAGGRDNPNNIE 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 +V E+LIAA+YLD I + K W + D KT LQEWA +K P Y+ Sbjct: 119 NVTEALIAAIYLDSDITTIHNIIGKLWAEFIKVKDLTDYDPKTALQEWAQSKDHHIPIYR 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 + R G H FTV V+I+G G S + AE+ AA E+L + + Sbjct: 179 LIKREGVAHLSTFTVSVKINGYEQ-TGKGHSIKEAEKNAARELLHKLKLL 227 >gi|306829619|ref|ZP_07462809.1| ribonuclease III [Streptococcus mitis ATCC 6249] gi|304428705|gb|EFM31795.1| ribonuclease III [Streptococcus mitis ATCC 6249] Length = 232 Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 110/227 (48%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ R FA++ LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKDRFAIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPRKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + +D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVVRVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +VT +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 180 QVTSETGPAHDKIFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226 >gi|307722018|ref|YP_003893158.1| RNAse III [Sulfurimonas autotrophica DSM 16294] gi|306980111|gb|ADN10146.1| RNAse III [Sulfurimonas autotrophica DSM 16294] Length = 227 Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 117/226 (51%), Gaps = 5/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M TLE+++GY F ++ L+ +ALTH S Y ERLEFLGD +L L++ LF Sbjct: 1 MHK-NIKTLEEKLGYEFKDKKLIIEALTHKSYKQPY--DNERLEFLGDAVLDLVVGEYLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F ++ EG+LS SLV+ ++AR L L +I +S+ + +S+ ++ E Sbjct: 58 RKFRTSDEGKLSKIRASLVNETGFDKLARALHLGDYILLSNAEDNNGGREKSSLLSNAFE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+YL+ G+ ++ + RD KT LQE A+FG+TPEYKV Sbjct: 118 AIMGAVYLEAGLGEVQRIAIDLIEKNHEEISLDSLFRDFKTTLQELTQARFGITPEYKVL 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F V V I A+ SK+ A+Q AA ++ Sbjct: 178 ASRGPDHQKEFEVGVFIEDKEYARANGKSKKIAQQEAARVAVELLN 223 >gi|307708796|ref|ZP_07645258.1| ribonuclease III [Streptococcus mitis NCTC 12261] gi|307615162|gb|EFN94373.1| ribonuclease III [Streptococcus mitis NCTC 12261] Length = 232 Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 180 QVISETGPAHDKVFEVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|58584360|ref|YP_197933.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75498100|sp|Q5GTI3|RNC_WOLTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|58418676|gb|AAW70691.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 243 Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 124/228 (54%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L T+ K I Y F N ++LE+ALTH S++ E+YERLEFLGD IL +++S Sbjct: 11 MEDLN-DTISKIINYRFKNDAILEEALTHPSLNKRNSKNQIENYERLEFLGDSILNMIVS 69 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +LF F KEG L+ R LV T + VA+E+ L +FI +++ R + Sbjct: 70 AILFRLFPKEKEGALARRKTDLVCGNTIANVAKEIKLGNFIIMNNSERCNGGKRNLKNLE 129 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + +E+LI A+Y+DGG FV K+W++RA +D KT LQEW PEY+ Sbjct: 130 NALEALIGAIYIDGGFANVKKFVTKHWEERAKGMLSLPQDPKTSLQEWTQKNKLPLPEYE 189 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + ++GP H P FT+ + I SK+ AEQ AA +L++ Sbjct: 190 LMKQTGPAHSPEFTISICIENYGKVFACASSKKVAEQKAAELMLEKIN 237 >gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168] gi|221309468|ref|ZP_03591315.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168] gi|221313793|ref|ZP_03595598.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318717|ref|ZP_03600011.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. JH642] gi|221322988|ref|ZP_03604282.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. SMY] gi|321315359|ref|YP_004207646.1| ribonuclease III [Bacillus subtilis BSn5] gi|7531275|sp|P51833|RNC_BACSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|2633965|emb|CAB13466.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168] gi|291484144|dbj|BAI85219.1| ribonuclease III [Bacillus subtilis subsp. natto BEST195] gi|320021633|gb|ADV96619.1| ribonuclease III [Bacillus subtilis BSn5] Length = 249 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 108/224 (48%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS LF Sbjct: 19 QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLF 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+L+ ++V + +A EL + + ++ ADV E Sbjct: 79 AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G+E +F+ Y + D K++LQE+ + EYK++ Sbjct: 139 AFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQLQEYVQRDGKGSLEYKISN 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F +V + G G SK+ AEQ AA E L + Sbjct: 199 EKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAKL 242 >gi|67459568|ref|YP_247192.1| ribonuclease III [Rickettsia felis URRWXCal2] gi|75536032|sp|Q4UKA8|RNC_RICFE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|67005101|gb|AAY62027.1| Ribonuclease III [Rickettsia felis URRWXCal2] Length = 225 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 114/223 (51%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + LEK +GY+F N+ LL +AL+H S+ ++ + YERLEFLGD +L L+++ +LF Sbjct: 4 FEKLEKLLGYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVVTEILFK 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +F + EG L+ + LV ET V +L L +I ++ + + E+ Sbjct: 64 NFANYNEGNLAKIRSYLVCKETICVVGTKLTLKDYIIMTHGEEVAGGRDNPNNIENATEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LIAA+YLD IE + K W + D KT LQEWA A P Y++ R Sbjct: 124 LIAAIYLDSNIETTRNIIGKLWAEFIKIQNLTDYDPKTALQEWAQASSHHLPIYRLIKRE 183 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G H FTV+V++ G S + AE+ AA ++L + Sbjct: 184 GAAHSSTFTVLVKVKDYKQ-IGTGHSIKEAEKNAARKLLHKLK 225 >gi|283953747|ref|ZP_06371278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414] gi|283794788|gb|EFC33526.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414] Length = 224 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF Sbjct: 1 MKNI--EKLEQNLTYEFKDKNLLMHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG+LS +LV+ ++ +++A L+L FI +S + +SI +D +E Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKSSILSDALE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++L+ G E A T + ++ + +D KT+LQE K G TP+Y+ Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH +F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 177 RAFGPDHLKQFEIALMLDGKEIARAIAGSKKEAQQMAAKIALEKLG 222 >gi|223041196|ref|ZP_03611448.1| ribonuclease III [Campylobacter rectus RM3267] gi|222877555|gb|EEF12684.1| ribonuclease III [Campylobacter rectus RM3267] Length = 222 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 113/219 (51%), Gaps = 4/219 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE+++GY F + LL+ ALTH S+ + ERLEFLGD ++ L+I LF+ F Sbjct: 3 NLEEKLGYKFKDEKLLKTALTHKSV--KGGANNERLEFLGDAVMDLVIGDYLFHKFSRLS 60 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS +LV+ ++ +++A+ L+L I +S + SI +D E+L+ A+Y Sbjct: 61 EGDLSKLRAALVNEKSFAELAKYLNLGQLINISPAEEHNGGRLKASILSDAFEALMGAIY 120 Query: 128 LDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 L+ G + + + + +D KT LQE A+F P+Y + GPDH Sbjct: 121 LESGFDAVRAASLKAFERCYPDINFDRMVKDYKTALQELTQARFAEIPKYVLVGSKGPDH 180 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + + ++ ++ SK+ AEQ AA L+ G Sbjct: 181 KKEFEIALMLNEREISRAAGKSKKEAEQKAAKTALEILG 219 >gi|325265084|ref|ZP_08131811.1| ribonuclease III [Clostridium sp. D5] gi|324029774|gb|EGB91062.1| ribonuclease III [Clostridium sp. D5] Length = 232 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 118/233 (50%), Gaps = 10/233 (4%) Query: 1 MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLL 54 M + LEK+IGY F + SLL +A+ HSS ++ ERLEFLGD +L L+ Sbjct: 1 MKYMSDNLKELEKKIGYKFRDFSLLRRAMMHSSFTNEKHLEKYHCNERLEFLGDAVLELV 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 S LF EGEL+ S+V + + AR++DL S++ + SI Sbjct: 61 SSEYLFLESPKVSEGELTKTRASMVCEPSLAFCARDIDLGSYLLLGRGEEATGGRARDSI 120 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 +D +E+LI A+YLDGG A F+ ++ L+ K D+KT LQE A+ + Sbjct: 121 TSDALEALIGAIYLDGGFTNAKEFIHRFIL-TDLEDKKLFFDSKTILQEIVQARMAGSIS 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKREG 224 Y++ GPDH+ F V V I G +K+AAEQ AA + L++E Sbjct: 180 YRLIKEEGPDHNKAFFVEVMIEENGYGIGKGRTKKAAEQEAAYKAILELRKEK 232 >gi|169830829|ref|YP_001716811.1| ribonuclease III [Candidatus Desulforudis audaxviator MP104C] gi|169637673|gb|ACA59179.1| Ribonuclease III [Candidatus Desulforudis audaxviator MP104C] Length = 235 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 112/220 (50%), Gaps = 4/220 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 + ++ IG + + LL +ALTHSS S+ + +RLEFLGD +L +++S L+ Sbjct: 6 NLAEFQEGIGLFWRDPDLLLEALTHSSFSYEHPGHRHNQRLEFLGDAVLEIVVSEHLYRR 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A EG+L+ ++V + VARE++L +++R+ S+ AD +E+L Sbjct: 66 LPDAPEGDLTKIRAAVVCEPALAHVAREMNLGTYLRMGRGEELSGGRERPSVLADALEAL 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + ALYLD G+EVA F + + + GK D KT LQE + Y + Sbjct: 126 LGALYLDQGLEVARWFALQSLEPIISATLAGKGEADYKTRLQELLQKRSPEPLRYVIIKE 185 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GPDH+ FT V G +G +K+ AEQ AA E L Sbjct: 186 EGPDHNKLFTAGVVYRGKVLGRGTGRTKKEAEQHAAREAL 225 >gi|251791907|ref|YP_003006627.1| ribonuclease III [Aggregatibacter aphrophilus NJ8700] gi|247533294|gb|ACS96540.1| ribonuclease III [Aggregatibacter aphrophilus NJ8700] Length = 226 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 115/228 (50%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L+++I Y F + LL++ALTH S H + ERLEFLGD IL L I+ LF Sbjct: 1 MRTDNLDRLQRKIDYQFQDTGLLKQALTHRSAGH---KHNERLEFLGDAILNLTIAEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ L ++ + K SI AD VE Sbjct: 58 HQFPKCNEGELSRMRATLVREPTLAILARDFQLGDYLSLGQGELKSGGFRRESILADCVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD + A V ++++ + ++ G ++DAKT LQE+ P Y + Sbjct: 118 AIIGAISLDSNLTNATEIVTRWYQPLLKDIQPGDNQKDAKTRLQEYLQGNRLPVPTYNIV 177 Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ FTV I + G S+R AEQ AA ++L+ I Sbjct: 178 NIQGEAHNQLFTVECSIQNNDRTFIGKGSSRRKAEQAAAEQILQELKI 225 >gi|16800985|ref|NP_471253.1| ribonuclease III [Listeria innocua Clip11262] gi|22654065|sp|Q92AK3|RNC_LISIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|16414420|emb|CAC97149.1| rncS [Listeria innocua Clip11262] gi|313618316|gb|EFR90363.1| ribonuclease III [Listeria innocua FSL S4-378] Length = 229 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ ++ L++ +G+ F N LL++A THSS + ++ + ERLEFLGD +L L +S Sbjct: 1 MN--QWEELQESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LFN + EG ++ ++V + + A + + ++R+ K ++ A Sbjct: 59 DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 DV ES I ALYLD GI+ F+++ + D KT+LQE V EY Sbjct: 119 DVFESFIGALYLDNGIDKVVKFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226 >gi|42523419|ref|NP_968799.1| ribonuclease III [Bdellovibrio bacteriovorus HD100] gi|81617308|sp|Q6MLR5|RNC_BDEBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|39575625|emb|CAE79792.1| ribonuclease III [Bdellovibrio bacteriovorus HD100] Length = 234 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 6/221 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 +LE+R+G+ F N +LLE+ALTH S ++ + E E+LEFLGD +L L++ L+ F Sbjct: 7 KSLEERVGHQFKNPALLERALTHKSFANELRNTVEHNEKLEFLGDAVLDLVVGEFLYEKF 66 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG LS + S+V+ E S++A E+ L +++ + + A E+++ Sbjct: 67 PTDTEGGLSKKRASIVNEEVLSELALEMGLNKLMQLGKGEALTGGAQKPRLIASSFEAIV 126 Query: 124 AALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ALYLDGG EVA +F+ + + R F RD KT LQE TP Y+V Sbjct: 127 GALYLDGGFEVARSFIRQEFVPLADRVCGHEDFERDYKTRLQELVQKSSKETPRYEVLAE 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP HD F V V++ AQG SK+ AEQ+AA L+ Sbjct: 187 EGPPHDREFLVCVKVKEDVWAQGRGRSKKNAEQMAAKNALE 227 >gi|222824476|ref|YP_002576050.1| ribonuclease III [Campylobacter lari RM2100] gi|222539697|gb|ACM64798.1| ribonuclease III [Campylobacter lari RM2100] Length = 222 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 111/221 (50%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L++R+ Y F N LL +ALTH S Y + ERLEFLGD ++ L++ LF F Sbjct: 2 LKKLQERLNYHFKNEQLLIEALTHKSYKKPY--NNERLEFLGDAVMDLVVGEFLFFKFQK 59 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG LS +LV+ ++ + +A++LDL I +S + SI +D E+L+ A Sbjct: 60 ESEGNLSKLRAALVNEKSFANLAQKLDLGECIFMSIAEENNDGRNKPSILSDAFEALMGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G E + +D KT+LQE A TPEY V GP Sbjct: 120 MYLEIGFEKTKNIALNLLNEVYPHIDTQSLFKDYKTKLQEITQANMAGTPEYIVVNAFGP 179 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH +F + ++I G A+ + SK+ A+Q A L++ G Sbjct: 180 DHKKQFEIAIKIQGKEFARAIAGSKKEAQQQCAKIALEKLG 220 >gi|255321781|ref|ZP_05362936.1| ribonuclease III [Campylobacter showae RM3277] gi|255301261|gb|EET80523.1| ribonuclease III [Campylobacter showae RM3277] Length = 222 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 113/219 (51%), Gaps = 4/219 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE+++GY F + LL+ ALTH S+ + ERLEFLGD ++ L+I LF+ F Sbjct: 3 NLEEKLGYKFKDEKLLKTALTHKSV--KGGANNERLEFLGDAVMDLVIGDYLFHKFSRLS 60 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS +LV+ ++ +++A+ L+L I +S + SI +D E+L+ A+Y Sbjct: 61 EGDLSKLRAALVNEKSFAELAKYLNLGQLINISPAEEHNGGRAKASILSDAFEALMGAIY 120 Query: 128 LDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 L+ G + + + + +D KT LQE A+F P+Y + GPDH Sbjct: 121 LESGFDAVRAASLKAFERCYPDINFDRMVKDYKTALQELTQARFAQIPKYVLVGSKGPDH 180 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + + ++ ++ SK+ AEQ AA L+ G Sbjct: 181 KKEFEIALMLNEREISRAAGKSKKEAEQKAAKTALEILG 219 >gi|322389960|ref|ZP_08063500.1| ribonuclease III [Streptococcus parasanguinis ATCC 903] gi|321143396|gb|EFX38834.1| ribonuclease III [Streptococcus parasanguinis ATCC 903] Length = 242 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L +R F++ SLL+ A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 10 MEKLQ-TLLSERFQIVFSDSSLLDTAFTHTSYANEHRLLKISHNERLEFLGDAVLQLVIS 68 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + +R+ +I++ K +I Sbjct: 69 EYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDHYIKLGKGEEKSGGRDRDTILG 128 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD G+E F+ + + D KT LQE V +Y Sbjct: 129 DLFEAFLGALLLDQGVEAVKRFIYQVMIPKVETGQFSQVIDYKTRLQELLQVHGDVEIQY 188 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +V SGP H F V V ++G G SK+ AEQ AA ++ Sbjct: 189 QVVSESGPAHAKEFEVEVFVNGKTLGHGHGRSKKLAEQEAARNAVE 234 >gi|308173556|ref|YP_003920261.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7] gi|307606420|emb|CBI42791.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7] gi|328553511|gb|AEB24003.1| ribonuclease III [Bacillus amyloliquefaciens TA208] gi|328911697|gb|AEB63293.1| ribonuclease III [Bacillus amyloliquefaciens LL3] Length = 249 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 107/224 (47%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS LF Sbjct: 19 QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+L+ ++V + +A EL + + ++ ADV E Sbjct: 79 AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G+E F+ Y + D K++LQE+ + EYK+ Sbjct: 139 AFIGALYLDQGLEPVQQFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRDGKGSLEYKILN 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F +V + G A G SK+ AEQ AA E L + Sbjct: 199 EKGPAHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAKL 242 >gi|167854942|ref|ZP_02477717.1| GTP-binding protein LepA [Haemophilus parasuis 29755] gi|167853899|gb|EDS25138.1| GTP-binding protein LepA [Haemophilus parasuis 29755] Length = 223 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY FAN L +ALTH S + ++ ERLEFLGD IL I L+ F Sbjct: 1 MQLERLQKKLGYQFANLDYLTQALTHRSAA---SKNNERLEFLGDSILNFAIGKALYEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + VAR+ +L ++++ + K SI +D VE++I Sbjct: 58 PKADEGELSRMRAALVKEQTLAVVARQFELGEYMKLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD GI+ A V +++Q ++ G+ ++D KT LQE+ + P Y+V Sbjct: 118 AAVYLDAGIDRAMERVHCWYQQLLNDMQLGEAQKDPKTRLQEYLQGRKLPLPTYEVIDIK 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V ++ + G S+R AEQ AA +V+K GI Sbjct: 178 GEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAALQVIKVLGI 222 >gi|120555160|ref|YP_959511.1| ribonuclease III [Marinobacter aquaeolei VT8] gi|120325009|gb|ABM19324.1| RNAse III [Marinobacter aquaeolei VT8] Length = 229 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 119/229 (51%), Gaps = 7/229 (3%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 MS+ L++RIGY F L ALTH S + ++ ERLEFLGD I+ ++I+ L Sbjct: 1 MSSQPDLDQLQRRIGYQFKEPERLLLALTHRSFGN---QNNERLEFLGDSIVNMVIAEYL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + HF+ A+EG+LS +V T +++ RE L ++R+ S K SI AD V Sbjct: 58 YLHFEKAREGQLSRLRARMVKGVTLAEIGREFQLGQYLRLGSGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ES+I A+YLD V ++++QR L ++D KT LQE+ ++ P Y+V Sbjct: 118 ESIIGAIYLDSDFHTCRAQVLRWFEQRLANLDIQDTQKDPKTRLQEYLQSRQFPLPRYEV 177 Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V + L G S+R AEQ AA LK+ G+ Sbjct: 178 ISVDGEAHNQTFHVSCALPSLDRKTTGTGSSRRVAEQQAARNALKQLGV 226 >gi|302386299|ref|YP_003822121.1| ribonuclease III [Clostridium saccharolyticum WM1] gi|302196927|gb|ADL04498.1| ribonuclease III [Clostridium saccharolyticum WM1] Length = 233 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 75/220 (34%), Positives = 113/220 (51%), Gaps = 6/220 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 MS LE+RIGY F++R L+ +A+THSS ++ ++ E ERLEFLGD +L ++ S Sbjct: 1 MSR-NLKELEERIGYRFSDRHLMTQAMTHSSYANEHRLNKLECNERLEFLGDSVLEVVSS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L++ + EG+L+ S+V T + A + L ++ + SI + Sbjct: 60 DCLYHKYPEKPEGDLTKIRASIVCEPTLAYCAESIRLGEYLLLGKGEEATGGRGRASIVS 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LI A+YLDGG A F+ ++ + D+KT LQE K Y+ Sbjct: 120 DAMEALIGAIYLDGGFANAKEFILRFIMNDLEHK-QLFYDSKTILQEIVQRKTDEPLSYE 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + GPDH+ F V I QG +K+AAEQVAA Sbjct: 179 LLREEGPDHNKVFEAQVLIGQEVIGQGTGRTKKAAEQVAA 218 >gi|219870402|ref|YP_002474777.1| ribonuclease III [Haemophilus parasuis SH0165] gi|254807496|sp|B8F3C7|RNC_HAEPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|219690606|gb|ACL31829.1| ribonuclease III/dsRNA-specific ribonuclease [Haemophilus parasuis SH0165] Length = 223 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY FAN L +ALTH S + ++ ERLEFLGD IL I L+ F Sbjct: 1 MQLERLQKKLGYQFANLDYLTQALTHRSAA---SKNNERLEFLGDSILNFAIGKALYEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + VAR+ +L ++++ + K SI +D VE++I Sbjct: 58 PKANEGELSRMRAALVKEQTLAVVARQFELGEYMKLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD GI+ A V +++Q ++ G+ ++D KT LQE+ + P Y+V Sbjct: 118 AAVYLDAGIDRAMERVHCWYQQLLNDMQLGEAQKDPKTRLQEYLQGRKLPLPTYEVIDIK 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V ++ + G S+R AEQ AA +V+K GI Sbjct: 178 GEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAALQVIKVLGI 222 >gi|21672530|ref|NP_660597.1| ribonuclease III [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009123|sp|Q8K9R1|RNC_BUCAP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|21623153|gb|AAM67808.1| ribonuclease III [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 226 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 125/228 (54%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + +++ +GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNHIVANKIQQILGYTFTHQELLKQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 HF EG++S +LV T +++A E DL ++++ K SI A+ VE Sbjct: 58 QHFPYIDEGDMSRMRATLVRGNTLAEIAYEFDLGEYLQLGQGELKSGGFRRESILANTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++YLD I+ + K++++R + G ++D KT LQE+ +K P Y + Sbjct: 118 ALIGSIYLDSNIKTVEELILKWYEKRLEKISPGDTQKDPKTRLQEYLQSKHLSLPSYFIV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ FT+ E+S L G S+R AEQ AA + L + G+ Sbjct: 178 EVYGEAHNQLFTIHCEVSTLSTSFIGKGTSRRKAEQDAARKALIKLGV 225 >gi|330814142|ref|YP_004358381.1| signal peptidase I [Candidatus Pelagibacter sp. IMCC9063] gi|327487237|gb|AEA81642.1| signal peptidase I [Candidatus Pelagibacter sp. IMCC9063] Length = 224 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 127/225 (56%), Gaps = 1/225 (0%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + +EK + F N + LEKALTH SI+ + ERLEF+GDR+LGL+I+T L Sbjct: 1 MDKNYLTKVEKILNIKFKNTNFLEKALTHKSITKISASNNERLEFIGDRVLGLVIATKLS 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG L + SLV+ +TCSQ+ +L+L +I +SS +K+ I D+ E Sbjct: 61 ILYPEDVEGSLDKKLASLVNKDTCSQIIEKLNLGKYILLSSSQQKNKI-GHKKIYGDLCE 119 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLI A+YLD G A FV W++ +S D+KT+LQE++ F V P YK Sbjct: 120 SLIGAVYLDKGFSEANKFVLSLWRENLKRSTIVEVDSKTQLQEYSLKFFKVLPIYKNLSN 179 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP H P F + V+I+ G SK+ AEQ+AA+++LK + Sbjct: 180 KGPSHKPSFKISVKITNSKLCTGEGTSKKKAEQLAASKLLKTLNL 224 >gi|300023749|ref|YP_003756360.1| ribonuclease III [Hyphomicrobium denitrificans ATCC 51888] gi|299525570|gb|ADJ24039.1| ribonuclease III [Hyphomicrobium denitrificans ATCC 51888] Length = 235 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 95/222 (42%), Positives = 134/222 (60%), Gaps = 2/222 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 ++ LE ++G+ F + LLE+ALTH+S+ + ERLEF+GDR+LGL I+ +L Sbjct: 6 KFKELETKLGHRFKDPGLLERALTHASVRGGKIARFDNERLEFIGDRVLGLAIAEILNQQ 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A EGEL+ R+N LV E C++VAR + L + + +S T+I AD E+L Sbjct: 66 YPEASEGELARRYNRLVRGEACAKVARNIGLGAHLILSESEADSGGRDKTTILADAAEAL 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + A+++D G E A V K W++++ + DAK+ LQEWA + P+Y V R G Sbjct: 126 LGAVFIDVGFEKARAVVRKLWQEQSEPVPEVAVDAKSALQEWAQGQGLALPKYTVVSRKG 185 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH PRFT V I+G APAQG SKR AEQ AA +L REG Sbjct: 186 PDHAPRFTAEVIIAGRAPAQGEGASKRIAEQAAATALLTREG 227 >gi|224372163|ref|YP_002606535.1| ribonuclease III [Nautilia profundicola AmH] gi|223589278|gb|ACM93014.1| ribonuclease III [Nautilia profundicola AmH] Length = 226 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 7/224 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ S LEK +GY F N+ L+ +ALTH S + ERLEFLGD ++ L++ LF+ F Sbjct: 1 MQISELEKSLGYQFKNKKLITEALTHRSYKKEV--NNERLEFLGDAVMDLIVGEYLFHLF 58 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A+EG LS +LV+ ++ +++A+ L+L ++ +S + SI + E++I Sbjct: 59 PKAEEGILSKLRAALVNEDSFTRLAKRLNLGKYLYLSPAEENNNGREKPSILSSAFEAVI 118 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YL+ G E A + K+ +D KT LQE A FGV PEY++ S Sbjct: 119 GAIYLEAGFEKAKDVALRLLKEEFPIITPEELLKDYKTTLQEITQAHFGVVPEYRLISAS 178 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKR 222 GPDH F + V I A+ SK+ A+Q A ++LK+ Sbjct: 179 GPDHKKEFEIGVFIQDKEYARAKGKSKKTAQQEGARLTIDMLKK 222 >gi|332074858|gb|EGI85330.1| ribonuclease III [Streptococcus pneumoniae GA41301] Length = 232 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ F +++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFTDKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVVIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|270308287|ref|YP_003330345.1| ribonuclease III [Dehalococcoides sp. VS] gi|270154179|gb|ACZ62017.1| ribonuclease III [Dehalococcoides sp. VS] Length = 248 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLL 59 L + LE+ +G F N SLLE+AL H+S + S ER+EFLGD +LG++ + L Sbjct: 13 LDLTELEESLGVKFENPSLLEQALIHTSWVNENPTHLNGSNERMEFLGDAVLGVIFADRL 72 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F +EG+L+ + LV E+ +VA ++L +++ + F + A Sbjct: 73 YHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGNYLYLGRGEDVSKGRFKPANLAGAF 132 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177 E+++AA+Y+D GI++ + + ++ + D K+ LQE A+ +TP Y++ Sbjct: 133 EAVLAAIYIDKGIDITREVIFRLFRTEMERVQTLSSNIDYKSRLQELIQAQMQMTPRYRI 192 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 T SGP+H+ F V A+G SK+ AE AA L++ Sbjct: 193 TNFSGPEHNRLFVAEVYTEDKVLAEGSGRSKKEAETSAAKAALQQ 237 >gi|289168052|ref|YP_003446321.1| ribonuclease III [Streptococcus mitis B6] gi|288907619|emb|CBJ22456.1| ribonuclease III [Streptococcus mitis B6] Length = 232 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + D KT LQE VT Y Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVTIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|225860919|ref|YP_002742428.1| ribonuclease III [Streptococcus pneumoniae Taiwan19F-14] gi|298229966|ref|ZP_06963647.1| ribonuclease III [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254343|ref|ZP_06977929.1| ribonuclease III [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502755|ref|YP_003724695.1| ribonuclease III [Streptococcus pneumoniae TCH8431/19A] gi|254807906|sp|C1CR56|RNC_STRZT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|225726586|gb|ACO22437.1| ribonuclease III [Streptococcus pneumoniae Taiwan19F-14] gi|298238350|gb|ADI69481.1| ribonuclease III [Streptococcus pneumoniae TCH8431/19A] gi|327389483|gb|EGE87828.1| ribonuclease III [Streptococcus pneumoniae GA04375] Length = 232 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ F +++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFTDKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|57168805|ref|ZP_00367936.1| ribonuclease III Cj1635c [Campylobacter coli RM2228] gi|57019852|gb|EAL56535.1| ribonuclease III Cj1635c [Campylobacter coli RM2228] Length = 224 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+++ Y F ++ LL ALTH S Y + ERLEFLGD +L L++ LF Sbjct: 1 MKNIEL--LEQKLAYKFKDKDLLIHALTHKSFKKPY--NNERLEFLGDAVLDLVVGEYLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG+LS +LV+ ++ +++A L+L FI +S+ + SI +D +E Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 +++ A++L+ G + A K ++ + +D KT+LQE AK G TP+Y+ Sbjct: 117 AIMGAIHLEAGFDFARNIALKLIEKNFPQIDAKNLIKDYKTKLQEITQAKLGQTPQYETV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH +F + + ++G A+ + +K+ A+Q+AA L++ G Sbjct: 177 RAFGPDHLKQFEIALFLNGQELARAIAGNKKEAQQMAAKITLEKLG 222 >gi|322387562|ref|ZP_08061171.1| ribonuclease III [Streptococcus infantis ATCC 700779] gi|321141429|gb|EFX36925.1| ribonuclease III [Streptococcus infantis ATCC 700779] Length = 232 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 108/226 (47%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L + LE+R G F+++ LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELE-TVLEQRFGLVFSDKQLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + +D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDLLTVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +V GP HD F V V + G + +G SK+ AEQ AA ++ Sbjct: 180 QVISEIGPAHDKMFEVEVLVEGQSLGRGQGRSKKLAEQEAAKNAVE 225 >gi|28210930|ref|NP_781874.1| ribonuclease III [Clostridium tetani E88] gi|73917577|sp|Q895M9|RNC_CLOTE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28203369|gb|AAO35811.1| ribonuclease III [Clostridium tetani E88] Length = 235 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 5/230 (2%) Query: 1 MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57 M+ + L+ +I F N LL ALTHSS ++ + + ERLEFLGD +L L+I+ Sbjct: 1 MNKYMDLKDLQNKIEIKFENIKLLHIALTHSSYANEKKRIQYNERLEFLGDSVLQLVITE 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF ++ EGELS + +V + +A+ L+L +I++S SI AD Sbjct: 61 YLFMNYKDKSEGELSKKRALIVCENSLFSIAKNLELGEYIKMSKGEELTGGRERISILAD 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEY 175 VE+LIA++YLD GI+V F+ K + + D KT+LQE + Y Sbjct: 121 AVEALIASIYLDKGIDVVREFILKNFYNIVEKAMKDEIILDYKTKLQEIIQKDGDIQINY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + GP H +F V+I G+ SK+ +EQ AA + ++ + Sbjct: 181 ILIKHEGPPHRRKFYTEVKIKDNVLGYGIGYSKKESEQNAAKKAIENMEV 230 >gi|157825292|ref|YP_001493012.1| ribonuclease III [Rickettsia akari str. Hartford] gi|189043339|sp|A8GM79|RNC_RICAH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157799250|gb|ABV74504.1| ribonuclease III [Rickettsia akari str. Hartford] Length = 227 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 117/222 (52%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + TLEK +GY+F N+ LL +AL+H S+ ++ + YERLEFLGD +L L+++ +LF Sbjct: 4 FETLEKLLGYSFKNQELLIEALSHPSLRQHHEYKYDKDYERLEFLGDAVLNLVVTEILFR 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +F S EG L+ + LV ET V +L L +I ++ + + +E+ Sbjct: 64 NFASYNEGNLAKIRSYLVCKETICVVGTKLTLKDYIIMTYGEEVAGGRDNPNNIENAMEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LIAA+YLD IE + K W++ D KT LQEWA A P Y++ R Sbjct: 124 LIAAIYLDSNIETTRNIIGKLWEEFIKIQNLTDYDPKTALQEWAQASSHHLPIYRLIKRE 183 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H FTV+V++ G S + AE+ AA ++L R Sbjct: 184 GAAHSSTFTVLVKVKDYEQ-TGTGHSIKEAEKNAARDLLHRL 224 >gi|157803302|ref|YP_001491851.1| ribonuclease III [Rickettsia canadensis str. McKiel] gi|189043341|sp|A8EXI3|RNC_RICCK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157784565|gb|ABV73066.1| ribonuclease III [Rickettsia canadensis str. McKiel] Length = 227 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 117/228 (51%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIS 56 MS+ ++ LEK +GY+F N+ LL +AL+H S+ + + YERLEFLGD +L L+I+ Sbjct: 1 MSS--FNELEKLLGYSFKNKELLIEALSHPSLRQHHEYKDNKDYERLEFLGDAVLNLVIT 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +LF++F S EG L+ + LV ET V +L L +I ++ + Sbjct: 59 KILFSNFASYNEGNLAKIRSYLVCKETICMVGAKLALKDYIIMTYGEEVAGGRDNPNNIE 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + E+LIAA+YLD IE + + W + D KT LQEWA A P Y Sbjct: 119 NATEALIAAIYLDSNIETTHNIIGQLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYC 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + R G H FTV+V++ G+ S + AE+ AA +L R Sbjct: 179 LIKREGAAHSSTFTVLVKVKDYEQ-IGIGYSIKEAEKNAARSLLHRLK 225 >gi|261492470|ref|ZP_05989024.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496943|ref|ZP_05993311.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307467|gb|EEY08802.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311833|gb|EEY12982.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 224 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 75/220 (34%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY F N L +ALTH S + ++ ERLEFLGD IL I +L++ F Sbjct: 1 MQLERLQKKLGYQFHNLDYLIQALTHRSAA---TKNNERLEFLGDSILNFTIGKVLYDKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EGELS +LV +T + +AR+ DL ++++ K SI +D VE++I Sbjct: 58 PKSNEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGGFRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD + A V+ ++ + + G ++D KT LQE+ + PEY V Sbjct: 118 AAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEFLQGRKLPLPEYDVLDIK 177 Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVL 220 G H+ F V ++ G+ S+R AEQ AA + L Sbjct: 178 GEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKAL 217 >gi|305432452|ref|ZP_07401614.1| ribonuclease III [Campylobacter coli JV20] gi|304444491|gb|EFM37142.1| ribonuclease III [Campylobacter coli JV20] Length = 225 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 124/226 (54%), Gaps = 5/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LE+++ Y F ++ LL ALTH S Y + ERLEFLGD +L L++ LF Sbjct: 1 MMK-NIELLEQKLAYKFKDKDLLIHALTHKSFKKPY--NNERLEFLGDAVLDLVVGEYLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG+LS +LV+ ++ +++A L+L FI +S+ + SI +D +E Sbjct: 58 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 +++ A++L+ G + A K ++ + +D KT+LQE AK G TP+Y+ Sbjct: 118 AIMGAIHLEAGFDFARNIALKLIEKNFPQIDAKNLIKDYKTKLQEITQAKLGQTPQYETV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH +F + + ++G A+ + +K+ A+Q+AA L++ G Sbjct: 178 RAFGPDHLKQFEIALFLNGQELARAIAGNKKEAQQMAAKITLEKLG 223 >gi|254360744|ref|ZP_04976892.1| ribonuclease III [Mannheimia haemolytica PHL213] gi|153091314|gb|EDN73288.1| ribonuclease III [Mannheimia haemolytica PHL213] Length = 224 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY F N L +ALTH S + ++ ERLEFLGD IL I +L++ F Sbjct: 1 MQLERLQKKLGYQFHNLDYLIQALTHRSAA---TKNNERLEFLGDSILNFTIGKVLYDKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ DL ++++ K SI +D VE++I Sbjct: 58 PKANEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGGFRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD + A V+ ++ + + G ++D KT LQE+ + PEY V Sbjct: 118 AAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEFLQGRKLPLPEYDVLDIK 177 Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVL 220 G H+ F V ++ G+ S+R AEQ AA + L Sbjct: 178 GEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKAL 217 >gi|315634822|ref|ZP_07890104.1| ribonuclease III [Aggregatibacter segnis ATCC 33393] gi|315476374|gb|EFU67124.1| ribonuclease III [Aggregatibacter segnis ATCC 33393] Length = 226 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 113/228 (49%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L+++I Y F + +LL++ALTH S H ERLEFLGD IL L I+ LF Sbjct: 1 MREDNLDRLQRKIDYHFQDVALLKQALTHRSAGH---NHNERLEFLGDAILNLTIAEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ L ++ + K SI AD VE Sbjct: 58 HLFPKCNEGELSRMRATLVREPTLAILARDFQLGDYLSLGQGELKSGGFRRESILADCVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD + A V+++++ +K G ++DAKT LQE+ P Y V Sbjct: 118 AIIGAISLDSSLTHATQIVNRWYQTLLENIKPGDNQKDAKTRLQEYLQGNRQPLPTYNVV 177 Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V I G S+R AEQ AA ++L+ I Sbjct: 178 SIQGEAHNQLFIVECSISDNDRTFIGKGSSRRKAEQAAAEQILQELNI 225 >gi|217967335|ref|YP_002352841.1| Ribonuclease III [Dictyoglomus turgidum DSM 6724] gi|217336434|gb|ACK42227.1| Ribonuclease III [Dictyoglomus turgidum DSM 6724] Length = 238 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 110/222 (49%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNH 62 ++++ +F ++ LL +ALTH S H ++ +RLEFLGD +L ++I+ +LF Sbjct: 15 VERVKEKTRVSFNDKDLLIEALTHPSFKHENPNFKQDNQRLEFLGDAVLNMIITEILFQR 74 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A EG L+ + LV ET + A+ LDL I + K SI +D+ E+ Sbjct: 75 YREASEGFLTQKRIYLVKEETLYKKAKSLDLGELILLGVGEEKQGGRDKISILSDLFEAF 134 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I ALYLD G E FV++ +K+ L + K G P+Y V+ G Sbjct: 135 IGALYLDKGYEYTKNFVEEIFKEEIES--IEMEVDWKNLLQTYLQKEGKKPQYIVSREVG 192 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P+HD F V + I ++G +KR AE AA + L++ Sbjct: 193 PEHDKTFYVELWIDDEKISEGEGKNKREAEIKAAQKALEKIK 234 >gi|168493169|ref|ZP_02717312.1| ribonuclease III [Streptococcus pneumoniae CDC3059-06] gi|183576640|gb|EDT97168.1| ribonuclease III [Streptococcus pneumoniae CDC3059-06] Length = 232 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ F +++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFTDKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTYLQELLQVNGDVAIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|150016054|ref|YP_001308308.1| ribonuclease III [Clostridium beijerinckii NCIMB 8052] gi|189043303|sp|A6LSM2|RNC_CLOB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|149902519|gb|ABR33352.1| Ribonuclease III [Clostridium beijerinckii NCIMB 8052] Length = 232 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 4/227 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58 M+ +E+ +G F N +LL+ ALTHSS + +++ ERLEFLGD +L L I+ Sbjct: 1 MNRYTLKEIEENLGVFFNNHTLLKTALTHSSFGNQFKDAEYNERLEFLGDSVLQLCITEY 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LFN++ EGEL+ + +V + ++A++++L S+IR+S SIQAD Sbjct: 61 LFNNYKHKTEGELTKIRSLIVCENSLYEIAKKINLGSYIRMSKGEEITGGRERISIQADA 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYK 176 VE++IAA+YLD GI F+ ++++ + + D KT+LQE V +Y+ Sbjct: 121 VEAIIAAVYLDKGIGFVRDFILLHFEEIINKAINNEIVLDFKTKLQELLQKDGEVVIQYE 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +T GP H +F V I +G SK+ AEQ AA + L Sbjct: 181 LTKFEGPPHRRKFFTNVVIDKKLMGEGSGYSKKEAEQNAAKQALDIL 227 >gi|81647146|sp|Q6G082|RNC_BARQU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|49239570|emb|CAF25927.1| Ribonuclease III [Bartonella quintana str. Toulouse] Length = 235 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 117/226 (51%), Positives = 153/226 (67%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ LE+ + F + L+KALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 1 MNCPIIDQLERLTEHHFKDEERLKKALTHSSVQDSEQGNYERLEFLGDRVLGLLIAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +A E+ L I V ++R +T++ ADV+E Sbjct: 61 KLFPQASEGELSVRLNGLVNAQTCADIALEMGLPDMIHVGFEMRNLKGRRLTNMHADVIE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG++ F+ +YW+ RA + RRDAKTELQEWAH + GV P Y+V R Sbjct: 121 ALIAVMYLDGGLKSVRPFIRRYWQSRAKQMDAGRRDAKTELQEWAHVQGGVQPHYRVVKR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDP F V V I G AP G SKR AE++AA +VL+REGIW Sbjct: 181 SGPDHDPVFMVEVSILGFAPEIGQGNSKRCAERMAAEKVLRREGIW 226 >gi|161761284|ref|YP_032108.2| ribonuclease III [Bartonella quintana str. Toulouse] Length = 246 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 117/226 (51%), Positives = 153/226 (67%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ LE+ + F + L+KALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 12 MNCPIIDQLERLTEHHFKDEERLKKALTHSSVQDSEQGNYERLEFLGDRVLGLLIAEMLY 71 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR N LV+A+TC+ +A E+ L I V ++R +T++ ADV+E Sbjct: 72 KLFPQASEGELSVRLNGLVNAQTCADIALEMGLPDMIHVGFEMRNLKGRRLTNMHADVIE 131 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG++ F+ +YW+ RA + RRDAKTELQEWAH + GV P Y+V R Sbjct: 132 ALIAVMYLDGGLKSVRPFIRRYWQSRAKQMDAGRRDAKTELQEWAHVQGGVQPHYRVVKR 191 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDP F V V I G AP G SKR AE++AA +VL+REGIW Sbjct: 192 SGPDHDPVFMVEVSILGFAPEIGQGNSKRCAERMAAEKVLRREGIW 237 >gi|15615052|ref|NP_243355.1| ribonuclease III [Bacillus halodurans C-125] gi|20139354|sp|Q9KA05|RNC_BACHD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|10175109|dbj|BAB06208.1| ribonuclease III [Bacillus halodurans C-125] Length = 263 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + L + + FAN+ LL +A THSS + ++ + ERLEFLGD +L L +S L+ Sbjct: 35 FDELLRTLNLTFANKKLLVQAFTHSSYVNEHRIQSCKDNERLEFLGDAVLELAVSQYLYK 94 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F+ EG+++ S+V + +Q+A EL + + ++ ADV ES Sbjct: 95 AFEQMSEGDMTKLRASIVCEPSLAQLAEELHFGELVLLGKGEEMTGGRKRPALLADVFES 154 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + ALYLD G++ F+++ + + D K++LQE+ Y++ Sbjct: 155 FVGALYLDQGMDAVYLFLERTIYPKISEGAFSHMMDFKSQLQEFIQRDNLGHIHYEIVQE 214 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V ++ G SK+ AEQ AA + L Sbjct: 215 RGPAHNREFVSEVVLNNETLGVGTGRSKKEAEQHAAQQALITL 257 >gi|126208025|ref|YP_001053250.1| ribonuclease III [Actinobacillus pleuropneumoniae L20] gi|189043287|sp|A3MZQ9|RNC_ACTP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|126096817|gb|ABN73645.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 223 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF F Sbjct: 1 MQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ L ++R+ + K SI +D VE++I Sbjct: 58 PKANEGELSRMRATLVREQTLAILARQFGLGEYMRLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 118 AAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDIK 177 Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 178 GEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 220 >gi|332976630|gb|EGK13471.1| ribonuclease III [Desmospora sp. 8437] Length = 231 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTL 58 + + L + IG + N+ L +A TH+S +H +Q ERLEFLGD +L L +S Sbjct: 1 MNLAELGQTIGLSLQNKELFLQAFTHTSFAHERKGERHQPDNERLEFLGDAVLELTVSEH 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L++ F KEG+L+ +V + + AR+L+ +R+ ++ ADV Sbjct: 61 LYHRFPHLKEGDLTRMRARIVCEPSLASFARDLNFGKHVRLGKGEELTGGRNRPALLADV 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ I ALYL+ G++ F+++ R DAK+ LQE + + Y++ Sbjct: 121 FEAFIGALYLEKGLDGVIDFMNRVILPRIDDQWLAQGSDAKSRLQEAVQQEHLGSLVYQI 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP HD +F V +SG G SK+ AEQ AAAE L+R Sbjct: 181 VDVQGPAHDRQFVAEVWLSGEKLGTGAGRSKKEAEQQAAAEGLQR 225 >gi|118444155|ref|YP_878292.1| ribonuclease III [Clostridium novyi NT] gi|118134611|gb|ABK61655.1| ribonuclease III [Clostridium novyi NT] Length = 237 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 116/230 (50%), Gaps = 7/230 (3%) Query: 1 MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLI 55 M R + +E ++ F + ++L+ ALTHSS + + S ERLEFLGD IL L I Sbjct: 1 MKKNRNIILNEVENKLKVKFNDINILDTALTHSSFINENKNINSNERLEFLGDSILQLCI 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S LL+N ++ EG L+ + +V + +VA++ ++ +I +S SI Sbjct: 61 SELLYNKYNDEPEGFLTKKRALIVCGNSLHEVAKKWNIGKYINMSKGEEMTGGRTRISIL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTP 173 +D VE++IA++YLD G EVA F+ + + + S + D KT+LQE Sbjct: 121 SDCVEAIIASIYLDQGYEVAKNFIIENFNEIIQKAHSNEIILDYKTKLQETIQKFGEYNI 180 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 EY + GP H +F V I L G SK+ +EQ AA E LK Sbjct: 181 EYTLVSFEGPPHRRKFVTEVSIDSLVKGVGEGYSKKESEQNAAKEALKGL 230 >gi|306845262|ref|ZP_07477838.1| ribonuclease III [Brucella sp. BO1] gi|306274421|gb|EFM56228.1| ribonuclease III [Brucella sp. BO1] Length = 257 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 118/218 (54%), Positives = 155/218 (71%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+R G+ F N LE+ALTHSS+ + +YERLEFLGDR+LGL ++ +LF F A E Sbjct: 34 LEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEASE 93 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELSVR N+LV+AETC+ +A E+ LA I SD++ + +++ADVVE+LIA +YL Sbjct: 94 GELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATIYL 153 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG+E A +F+ +YWK+R+L++G RRDAKTELQEWAH + V P Y + RSGPDHDP Sbjct: 154 DGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHDPL 213 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 F V V + G AP +G SKR AEQ AA +L REG+W Sbjct: 214 FLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 251 >gi|237815116|ref|ZP_04594114.1| ribonuclease III [Brucella abortus str. 2308 A] gi|260545623|ref|ZP_05821364.1| ribonuclease III [Brucella abortus NCTC 8038] gi|260563710|ref|ZP_05834196.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M] gi|260566758|ref|ZP_05837228.1| ribonuclease III family protein [Brucella suis bv. 4 str. 40] gi|260754424|ref|ZP_05866772.1| ribonuclease III [Brucella abortus bv. 6 str. 870] gi|260757643|ref|ZP_05869991.1| ribonuclease III [Brucella abortus bv. 4 str. 292] gi|260761470|ref|ZP_05873813.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59] gi|261213670|ref|ZP_05927951.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya] gi|261218969|ref|ZP_05933250.1| ribonuclease III [Brucella ceti M13/05/1] gi|261315123|ref|ZP_05954320.1| ribonuclease III [Brucella pinnipedialis M163/99/10] gi|261317321|ref|ZP_05956518.1| ribonuclease III [Brucella pinnipedialis B2/94] gi|261321532|ref|ZP_05960729.1| ribonuclease III [Brucella ceti M644/93/1] gi|261751989|ref|ZP_05995698.1| ribonuclease III [Brucella suis bv. 5 str. 513] gi|261754648|ref|ZP_05998357.1| ribonuclease III [Brucella suis bv. 3 str. 686] gi|261757876|ref|ZP_06001585.1| ribonuclease III family [Brucella sp. F5/99] gi|265983784|ref|ZP_06096519.1| ribonuclease III [Brucella sp. 83/13] gi|294852025|ref|ZP_06792698.1| ribonuclease III [Brucella sp. NVSL 07-0026] gi|297248033|ref|ZP_06931751.1| ribonuclease III [Brucella abortus bv. 5 str. B3196] gi|237789953|gb|EEP64163.1| ribonuclease III [Brucella abortus str. 2308 A] gi|260097030|gb|EEW80905.1| ribonuclease III [Brucella abortus NCTC 8038] gi|260153726|gb|EEW88818.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M] gi|260156276|gb|EEW91356.1| ribonuclease III family protein [Brucella suis bv. 4 str. 40] gi|260667961|gb|EEX54901.1| ribonuclease III [Brucella abortus bv. 4 str. 292] gi|260671902|gb|EEX58723.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59] gi|260674532|gb|EEX61353.1| ribonuclease III [Brucella abortus bv. 6 str. 870] gi|260915277|gb|EEX82138.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya] gi|260924058|gb|EEX90626.1| ribonuclease III [Brucella ceti M13/05/1] gi|261294222|gb|EEX97718.1| ribonuclease III [Brucella ceti M644/93/1] gi|261296544|gb|EEY00041.1| ribonuclease III [Brucella pinnipedialis B2/94] gi|261304149|gb|EEY07646.1| ribonuclease III [Brucella pinnipedialis M163/99/10] gi|261737860|gb|EEY25856.1| ribonuclease III family [Brucella sp. F5/99] gi|261741742|gb|EEY29668.1| ribonuclease III [Brucella suis bv. 5 str. 513] gi|261744401|gb|EEY32327.1| ribonuclease III [Brucella suis bv. 3 str. 686] gi|264662376|gb|EEZ32637.1| ribonuclease III [Brucella sp. 83/13] gi|294820614|gb|EFG37613.1| ribonuclease III [Brucella sp. NVSL 07-0026] gi|297175202|gb|EFH34549.1| ribonuclease III [Brucella abortus bv. 5 str. B3196] gi|326408683|gb|ADZ65748.1| Ribonuclease III family [Brucella melitensis M28] gi|326538408|gb|ADZ86623.1| ribonuclease III [Brucella melitensis M5-90] Length = 234 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 118/218 (54%), Positives = 155/218 (71%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+R G+ F N LE+ALTHSS+ + +YERLEFLGDR+LGL ++ +LF F A E Sbjct: 11 LEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEASE 70 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELSVR N+LV+AETC+ +A E+ LA I SD++ + +++ADVVE+LIA +YL Sbjct: 71 GELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATIYL 130 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG+E A +F+ +YWK+R+L++G RRDAKTELQEWAH + V P Y + RSGPDHDP Sbjct: 131 DGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHDPL 190 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 F V V + G AP +G SKR AEQ AA +L REG+W Sbjct: 191 FLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 228 >gi|148560325|ref|YP_001258645.1| ribonuclease III [Brucella ovis ATCC 25840] gi|306837522|ref|ZP_07470397.1| ribonuclease III [Brucella sp. NF 2653] gi|306842074|ref|ZP_07474746.1| ribonuclease III [Brucella sp. BO2] gi|148371582|gb|ABQ61561.1| ribonuclease III [Brucella ovis ATCC 25840] gi|306287824|gb|EFM59247.1| ribonuclease III [Brucella sp. BO2] gi|306407414|gb|EFM63618.1| ribonuclease III [Brucella sp. NF 2653] Length = 257 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 118/218 (54%), Positives = 155/218 (71%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+R G+ F N LE+ALTHSS+ + +YERLEFLGDR+LGL ++ +LF F A E Sbjct: 34 LEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEASE 93 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELSVR N+LV+AETC+ +A E+ LA I SD++ + +++ADVVE+LIA +YL Sbjct: 94 GELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATIYL 153 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG+E A +F+ +YWK+R+L++G RRDAKTELQEWAH + V P Y + RSGPDHDP Sbjct: 154 DGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHDPL 213 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 F V V + G AP +G SKR AEQ AA +L REG+W Sbjct: 214 FLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 251 >gi|148993857|ref|ZP_01823259.1| ribonuclease III [Streptococcus pneumoniae SP9-BS68] gi|149007089|ref|ZP_01830758.1| ribonuclease III [Streptococcus pneumoniae SP18-BS74] gi|149012300|ref|ZP_01833369.1| ribonuclease III [Streptococcus pneumoniae SP19-BS75] gi|149019239|ref|ZP_01834601.1| ribonuclease III [Streptococcus pneumoniae SP23-BS72] gi|168486568|ref|ZP_02711076.1| ribonuclease III [Streptococcus pneumoniae CDC1087-00] gi|168489075|ref|ZP_02713274.1| ribonuclease III [Streptococcus pneumoniae SP195] gi|182684025|ref|YP_001835772.1| ribonuclease III [Streptococcus pneumoniae CGSP14] gi|225854713|ref|YP_002736225.1| ribonuclease III [Streptococcus pneumoniae JJA] gi|225859042|ref|YP_002740552.1| ribonuclease III [Streptococcus pneumoniae 70585] gi|303254257|ref|ZP_07340366.1| ribonuclease III [Streptococcus pneumoniae BS455] gi|303258883|ref|ZP_07344862.1| ribonuclease III [Streptococcus pneumoniae SP-BS293] gi|303261566|ref|ZP_07347513.1| ribonuclease III [Streptococcus pneumoniae SP14-BS292] gi|303264237|ref|ZP_07350157.1| ribonuclease III [Streptococcus pneumoniae BS397] gi|303266132|ref|ZP_07352025.1| ribonuclease III [Streptococcus pneumoniae BS457] gi|303268141|ref|ZP_07353941.1| ribonuclease III [Streptococcus pneumoniae BS458] gi|307127162|ref|YP_003879193.1| ribonuclease III [Streptococcus pneumoniae 670-6B] gi|238691158|sp|B2IPN5|RNC_STRPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807901|sp|C1C7M6|RNC_STRP7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807904|sp|C1CEK4|RNC_STRZJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|147761393|gb|EDK68359.1| ribonuclease III [Streptococcus pneumoniae SP18-BS74] gi|147763626|gb|EDK70561.1| ribonuclease III [Streptococcus pneumoniae SP19-BS75] gi|147927682|gb|EDK78707.1| ribonuclease III [Streptococcus pneumoniae SP9-BS68] gi|147931109|gb|EDK82088.1| ribonuclease III [Streptococcus pneumoniae SP23-BS72] gi|182629359|gb|ACB90307.1| ribonuclease III [Streptococcus pneumoniae CGSP14] gi|183570477|gb|EDT91005.1| ribonuclease III [Streptococcus pneumoniae CDC1087-00] gi|183572564|gb|EDT93092.1| ribonuclease III [Streptococcus pneumoniae SP195] gi|225722013|gb|ACO17867.1| ribonuclease III [Streptococcus pneumoniae 70585] gi|225722854|gb|ACO18707.1| ribonuclease III [Streptococcus pneumoniae JJA] gi|301801897|emb|CBW34621.1| ribonuclease III [Streptococcus pneumoniae INV200] gi|302598751|gb|EFL65788.1| ribonuclease III [Streptococcus pneumoniae BS455] gi|302637146|gb|EFL67634.1| ribonuclease III [Streptococcus pneumoniae SP14-BS292] gi|302639826|gb|EFL70282.1| ribonuclease III [Streptococcus pneumoniae SP-BS293] gi|302642358|gb|EFL72705.1| ribonuclease III [Streptococcus pneumoniae BS458] gi|302644302|gb|EFL74556.1| ribonuclease III [Streptococcus pneumoniae BS457] gi|302646049|gb|EFL76276.1| ribonuclease III [Streptococcus pneumoniae BS397] gi|306484224|gb|ADM91093.1| ribonuclease III [Streptococcus pneumoniae 670-6B] gi|332073586|gb|EGI84065.1| ribonuclease III [Streptococcus pneumoniae GA17570] gi|332074581|gb|EGI85055.1| ribonuclease III [Streptococcus pneumoniae GA17545] Length = 232 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ F ++ LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFTDKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|17987570|ref|NP_540204.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M] gi|23501548|ref|NP_697675.1| ribonuclease III [Brucella suis 1330] gi|62289621|ref|YP_221414.1| ribonuclease III [Brucella abortus bv. 1 str. 9-941] gi|82699549|ref|YP_414123.1| ribonuclease III [Brucella melitensis biovar Abortus 2308] gi|161618631|ref|YP_001592518.1| ribonuclease III [Brucella canis ATCC 23365] gi|163842933|ref|YP_001627337.1| ribonuclease III [Brucella suis ATCC 23445] gi|189023875|ref|YP_001934643.1| ribonuclease III [Brucella abortus S19] gi|225852182|ref|YP_002732415.1| ribonuclease III [Brucella melitensis ATCC 23457] gi|254688937|ref|ZP_05152191.1| ribonuclease III [Brucella abortus bv. 6 str. 870] gi|254693419|ref|ZP_05155247.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya] gi|254697072|ref|ZP_05158900.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59] gi|254701449|ref|ZP_05163277.1| ribonuclease III [Brucella suis bv. 5 str. 513] gi|254703995|ref|ZP_05165823.1| ribonuclease III [Brucella suis bv. 3 str. 686] gi|254707631|ref|ZP_05169459.1| ribonuclease III [Brucella pinnipedialis M163/99/10] gi|254709787|ref|ZP_05171598.1| ribonuclease III [Brucella pinnipedialis B2/94] gi|254713789|ref|ZP_05175600.1| ribonuclease III [Brucella ceti M644/93/1] gi|254717154|ref|ZP_05178965.1| ribonuclease III [Brucella ceti M13/05/1] gi|254718802|ref|ZP_05180613.1| ribonuclease III [Brucella sp. 83/13] gi|254729968|ref|ZP_05188546.1| ribonuclease III [Brucella abortus bv. 4 str. 292] gi|256031277|ref|ZP_05444891.1| ribonuclease III [Brucella pinnipedialis M292/94/1] gi|256044358|ref|ZP_05447262.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1] gi|256060789|ref|ZP_05450951.1| ribonuclease III [Brucella neotomae 5K33] gi|256113201|ref|ZP_05454069.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether] gi|256159387|ref|ZP_05457169.1| ribonuclease III [Brucella ceti M490/95/1] gi|256254685|ref|ZP_05460221.1| ribonuclease III [Brucella ceti B1/94] gi|256257185|ref|ZP_05462721.1| ribonuclease III [Brucella abortus bv. 9 str. C68] gi|256264307|ref|ZP_05466839.1| ribonuclease III family protein [Brucella melitensis bv. 2 str. 63/9] gi|256369099|ref|YP_003106607.1| ribonuclease III [Brucella microti CCM 4915] gi|260168415|ref|ZP_05755226.1| ribonuclease III [Brucella sp. F5/99] gi|260883452|ref|ZP_05895066.1| ribonuclease III [Brucella abortus bv. 9 str. C68] gi|261221863|ref|ZP_05936144.1| ribonuclease III [Brucella ceti B1/94] gi|261324780|ref|ZP_05963977.1| ribonuclease III [Brucella neotomae 5K33] gi|265988360|ref|ZP_06100917.1| ribonuclease III [Brucella pinnipedialis M292/94/1] gi|265990773|ref|ZP_06103330.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1] gi|265994609|ref|ZP_06107166.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether] gi|265997827|ref|ZP_06110384.1| ribonuclease III [Brucella ceti M490/95/1] gi|54039241|sp|P66665|RNC_BRUSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54041613|sp|P66664|RNC_BRUME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|75497081|sp|Q57E81|RNC_BRUAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101615|sp|Q2YN02|RNC_BRUA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043295|sp|A9MA35|RNC_BRUC2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043296|sp|B0CKY7|RNC_BRUSI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238691497|sp|B2SAD9|RNC_BRUA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807239|sp|C0RI03|RNC_BRUMB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|17983275|gb|AAL52468.1| ribonuclease iii [Brucella melitensis bv. 1 str. 16M] gi|23347459|gb|AAN29590.1| ribonuclease III [Brucella suis 1330] gi|62195753|gb|AAX74053.1| ribonuclease III [Brucella abortus bv. 1 str. 9-941] gi|82615650|emb|CAJ10637.1| Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain [Brucella melitensis biovar Abortus 2308] gi|161335442|gb|ABX61747.1| ribonuclease III [Brucella canis ATCC 23365] gi|163673656|gb|ABY37767.1| ribonuclease III [Brucella suis ATCC 23445] gi|189019447|gb|ACD72169.1| Ribonuclease III family [Brucella abortus S19] gi|225640547|gb|ACO00461.1| ribonuclease III [Brucella melitensis ATCC 23457] gi|255999259|gb|ACU47658.1| ribonuclease III [Brucella microti CCM 4915] gi|260872980|gb|EEX80049.1| ribonuclease III [Brucella abortus bv. 9 str. C68] gi|260920447|gb|EEX87100.1| ribonuclease III [Brucella ceti B1/94] gi|261300760|gb|EEY04257.1| ribonuclease III [Brucella neotomae 5K33] gi|262552295|gb|EEZ08285.1| ribonuclease III [Brucella ceti M490/95/1] gi|262765722|gb|EEZ11511.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether] gi|263001557|gb|EEZ14132.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1] gi|263094580|gb|EEZ18378.1| ribonuclease III family protein [Brucella melitensis bv. 2 str. 63/9] gi|264660557|gb|EEZ30818.1| ribonuclease III [Brucella pinnipedialis M292/94/1] Length = 245 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 118/218 (54%), Positives = 155/218 (71%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+R G+ F N LE+ALTHSS+ + +YERLEFLGDR+LGL ++ +LF F A E Sbjct: 22 LEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEASE 81 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELSVR N+LV+AETC+ +A E+ LA I SD++ + +++ADVVE+LIA +YL Sbjct: 82 GELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATIYL 141 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG+E A +F+ +YWK+R+L++G RRDAKTELQEWAH + V P Y + RSGPDHDP Sbjct: 142 DGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHDPL 201 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 F V V + G AP +G SKR AEQ AA +L REG+W Sbjct: 202 FLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 239 >gi|157150981|ref|YP_001450082.1| ribonuclease III [Streptococcus gordonii str. Challis substr. CH1] gi|189043362|sp|A8AWC2|RNC_STRGC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157075775|gb|ABV10458.1| Ribonuclease III (RNase III) [Streptococcus gordonii str. Challis substr. CH1] Length = 232 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 112/229 (48%), Gaps = 6/229 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L + L R G F + SLLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MKKLE-NLLFDRFGLVFKDVSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+L+ +++V E+ + +R+ FI++ K +I Sbjct: 60 EYLFEKYPKRPEGDLTKLRSTIVREESLAGFSRDCQFDRFIKLGKGEEKSGGRERETILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD G+EV F+ + + + D KT+LQE + V Y Sbjct: 120 DLFEAFLGALLLDKGLEVVKNFIYQVMIPKVEAGDFEQVTDYKTKLQELLQSNGDVEILY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +V SGP H F V V + G +G SK+ AEQ AA ++E Sbjct: 180 QVVSESGPAHAKNFEVSVSVDGRLVGKGQGRSKKLAEQEAAKNAFEKEN 228 >gi|167755900|ref|ZP_02428027.1| hypothetical protein CLORAM_01417 [Clostridium ramosum DSM 1402] gi|237734864|ref|ZP_04565345.1| ribonuclease III [Mollicutes bacterium D7] gi|167704839|gb|EDS19418.1| hypothetical protein CLORAM_01417 [Clostridium ramosum DSM 1402] gi|229382192|gb|EEO32283.1| ribonuclease III [Coprobacillus sp. D7] Length = 226 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 4/224 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60 + +++ + N + ++A TH S ++ + YERLEFLGD +L +S +F Sbjct: 1 MELEQFLQKMEIPYQNIEIFKEAFTHPSYANENKMKNHDYERLEFLGDAVLQYHVSRHIF 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG L+ LV E+ ++ ARELDL I + + + S+ AD+ E Sbjct: 61 DLYPELPEGRLTKLRAKLVREESLARFARELDLGPLIYLGAGELNNGGRDRDSVLADIFE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + A+ D G E +D + + D KT+LQE A T Y + Sbjct: 121 AFMGAICHDCGPEYVEKMLDITIYKHVEDVNYDEITDFKTKLQELIQADQRKTVTYDLIS 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP ++P F + V++ + G+ SK+ AEQ AA + L + Sbjct: 181 SSGPSNNPVFEMAVKMDEMVLGVGVGSSKKRAEQQAAKDALNKL 224 >gi|237737605|ref|ZP_04568086.1| ribonuclease III [Fusobacterium mortiferum ATCC 9817] gi|229419485|gb|EEO34532.1| ribonuclease III [Fusobacterium mortiferum ATCC 9817] Length = 240 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 121/235 (51%), Gaps = 11/235 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M Y EK +GY+F N+ LL+ +L H S + ++ S ERLE LGD +L L+++ Sbjct: 1 MKR-NYLDFEKNLGYSFKNKELLKNSLIHRSFGNEHRRYKKISNERLELLGDAVLDLVVT 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + ++ EG+L+ + +VS + ++++L++ ++ +S +SI Sbjct: 60 EYLYKSYANSTEGDLAKVKSMVVSEPVLAGISKKLEVGKYLLLSRGEELTGGRERSSILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPE 174 D E+++ A+Y+D E A FV + K + S + D KT LQE++ + V PE Sbjct: 120 DAFEAILGAIYMDSNFETAKEFVLTHIKDSIDHVDSNEEILDFKTILQEYSQKNYRVIPE 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 Y V GPDH F + V+I +G +K+ AEQ AA + K+ G+ Sbjct: 180 YSVINEIGPDHQKIFEIEVKIDNGIDEEKSDRGTGKNKKTAEQAAAKSLCKKLGV 234 >gi|88608789|ref|YP_506782.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama] gi|88600958|gb|ABD46426.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama] Length = 222 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 3/224 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L+ +G F N+ LL +ALTH S+ SYERLEFLGD +L L+I+++L++ F Sbjct: 1 MELEELQSLLGVYFKNKDLLVEALTHPSV--EKCPSYERLEFLGDAVLNLVIASMLYDLF 58 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS R ++L+ T + +AR+++L +IR+SS TS +V+E+L+ Sbjct: 59 PGDPEGRLSHRQSALICKNTLAMLARQMNLGDYIRLSSSEEAGGGRDKTSNLENVLEALV 118 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++LD G+E F+ K W A++S + K+ LQE AK P Y V RSGP Sbjct: 119 GAIFLDAGLETVTCFIKKRWYGLAVQSDSIEPNPKSTLQELLQAKGMKPPIYNVINRSGP 178 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 H P F + + + G + SK+ E+ AA +L+ T Sbjct: 179 AHLPIFEIEIRVDGKKR-RATGKSKKLGEENAARMMLEELKAET 221 >gi|322376803|ref|ZP_08051296.1| ribonuclease III [Streptococcus sp. M334] gi|321282610|gb|EFX59617.1| ribonuclease III [Streptococcus sp. M334] Length = 232 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVAKVKKFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|254463926|ref|ZP_05077337.1| ribonuclease III [Rhodobacterales bacterium Y4I] gi|206684834|gb|EDZ45316.1| ribonuclease III [Rhodobacterales bacterium Y4I] Length = 225 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 90/225 (40%), Positives = 132/225 (58%), Gaps = 1/225 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + E+RIG+ FA LL++A+TH+S+S S ++ +RLEFLGDR+LGL+++T L Sbjct: 1 MKLSKELRAFEERIGHKFARPELLQRAVTHASVSSSNRKDNQRLEFLGDRVLGLVMATAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 H +A EG+L+ RFN+LV E C+ VA+E+DL + +++ ++ D + Sbjct: 61 LEHDKTATEGQLAPRFNALVRKEACADVAKEIDLGAVLKLGRSEMMSGGRRKQALLGDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+Y D G + A + + W R + RDAKT LQEWA A+ P Y Sbjct: 121 EAVIAAVYKDAGFDAAAEMILRLWGTRIHQVETDARDAKTSLQEWAQARGQQVPIYVEVS 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 RSGPDH P FT+ + AQ SKR AEQ AA +L++ G Sbjct: 181 RSGPDHAPVFTIAARLQDGTEAQATAGSKRQAEQAAAKALLEQLG 225 >gi|256544903|ref|ZP_05472274.1| ribonuclease III [Anaerococcus vaginalis ATCC 51170] gi|256399402|gb|EEU13008.1| ribonuclease III [Anaerococcus vaginalis ATCC 51170] Length = 238 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 116/225 (51%), Gaps = 7/225 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFN 61 LE+ IGY F N++L++ ALTHSS + + S ERLEFLGD IL L++S L+ Sbjct: 11 IEKLEESIGYTFKNKNLIDVALTHSSYINESKDENKSSNERLEFLGDSILDLIVSEELYK 70 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EG+L+ + +V + S+ + + +L+S++ S++AD E+ Sbjct: 71 NHKTYPEGKLTKIRSRIVCTSSFSKASEKFNLSSYLLFGKGEESHNGREKKSVKADTFEA 130 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 AA+YLD G + F+ K + + + + D KT+LQE+ + + +YK+ Sbjct: 131 FCAAIYLDAGYDFLKDFLMKNYYEIVKELLENDLLFIDYKTKLQEYFNKTNRIILKYKLV 190 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP+H+ F + V + G +K+ AEQ+AA K+ Sbjct: 191 KEEGPEHNKTFYMEVSAKNKKLSTGKGKNKKEAEQMAARIAYKKL 235 >gi|149374709|ref|ZP_01892483.1| ribonuclease III [Marinobacter algicola DG893] gi|149361412|gb|EDM49862.1| ribonuclease III [Marinobacter algicola DG893] Length = 229 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 113/229 (49%), Gaps = 7/229 (3%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 MS+ L++RIGY F L ALTH S + ++ ERLEFLGD I+ ++I+ L Sbjct: 1 MSSQPDLEQLQRRIGYQFKTPERLLLALTHRSFGN---QNNERLEFLGDSIVNMVIAEYL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + HF+ A+EG+LS +V T +++ RE +L ++R+ S K SI AD V Sbjct: 58 YLHFEKAREGQLSRLRARMVKGVTLAEIGREFELGKYLRLGSGEMKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ES+I A+YLD + + L ++D KT LQE+ ++ P Y V Sbjct: 118 ESIIGAIYLDSDFHTCREQVLRWFEVRLQKLDLQDTQKDPKTRLQEYLQSRQFPLPRYDV 177 Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H F V + L G S+R AEQ AA LK+ G+ Sbjct: 178 ISVDGEAHAQTFHVSCALPSLDRKTTGTGNSRRIAEQQAARNALKQLGV 226 >gi|169833544|ref|YP_001694678.1| ribonuclease III [Streptococcus pneumoniae Hungary19A-6] gi|221231942|ref|YP_002511094.1| ribonuclease III [Streptococcus pneumoniae ATCC 700669] gi|307706718|ref|ZP_07643523.1| ribonuclease III [Streptococcus mitis SK321] gi|307709493|ref|ZP_07645950.1| ribonuclease III [Streptococcus mitis SK564] gi|238688328|sp|B1IC43|RNC_STRPI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807902|sp|B8ZJR8|RNC_STRPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|168996046|gb|ACA36658.1| ribonuclease III [Streptococcus pneumoniae Hungary19A-6] gi|220674402|emb|CAR68952.1| ribonuclease III [Streptococcus pneumoniae ATCC 700669] gi|301794330|emb|CBW36755.1| ribonuclease III [Streptococcus pneumoniae INV104] gi|301800168|emb|CBW32773.1| ribonuclease III [Streptococcus pneumoniae OXC141] gi|307617803|gb|EFN96965.1| ribonuclease III [Streptococcus mitis SK321] gi|307619807|gb|EFN98926.1| ribonuclease III [Streptococcus mitis SK564] gi|332203096|gb|EGJ17164.1| ribonuclease III [Streptococcus pneumoniae GA47901] Length = 232 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|125973448|ref|YP_001037358.1| ribonuclease III [Clostridium thermocellum ATCC 27405] gi|256005344|ref|ZP_05430309.1| ribonuclease III [Clostridium thermocellum DSM 2360] gi|281417648|ref|ZP_06248668.1| ribonuclease III [Clostridium thermocellum JW20] gi|125713673|gb|ABN52165.1| RNAse III [Clostridium thermocellum ATCC 27405] gi|255990663|gb|EEU00780.1| ribonuclease III [Clostridium thermocellum DSM 2360] gi|281409050|gb|EFB39308.1| ribonuclease III [Clostridium thermocellum JW20] gi|316940315|gb|ADU74349.1| ribonuclease III [Clostridium thermocellum DSM 1313] Length = 236 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 113/225 (50%), Gaps = 6/225 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + LE+ I Y F ++ L ALTHSS ++ ++ S ERLEFLGD +L +++S ++ Sbjct: 11 INELERVIDYCFEDKMKLVLALTHSSYANECRDERITSNERLEFLGDTVLNMVVSEYIYK 70 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGE++ ++V T ++ A+ L + ++ + SI +D VE+ Sbjct: 71 NCSYLAEGEMTKFRANVVCERTLAECAQNLSIGKYLLLGKGEENTGGRTRVSILSDAVEA 130 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+Y+DGG+E A TF+ ++ KS + D KT+LQE Y++ Sbjct: 131 LIGAIYIDGGLESARTFILNQLEKTIEKSIQGTIFMDYKTQLQEIIQKTNEHKIAYEIIE 190 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F V++ G +K+ AEQ+AA L+ Sbjct: 191 EKGPDHSKVFVAQVKVDEKVVGVGEGRTKKEAEQMAAKSSLENIN 235 >gi|262282633|ref|ZP_06060401.1| ribonuclease III [Streptococcus sp. 2_1_36FAA] gi|262261924|gb|EEY80622.1| ribonuclease III [Streptococcus sp. 2_1_36FAA] Length = 232 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 112/229 (48%), Gaps = 6/229 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L + L R G F + SLLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MKKLE-NLLFDRFGLVFKDVSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+L+ +++V E+ + +R+ FI++ K +I Sbjct: 60 EYLFEKYPKRPEGDLTKLRSTIVREESLAGFSRDCQFDLFIKLGKGEEKSGGRERETILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD G+E+ F+ + + + D KT+LQE + V Y Sbjct: 120 DLFEAFLGALLLDKGLEIVKDFIYQVMIPKVEAGDFEQVTDYKTKLQELLQSNGDVEILY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +V SGP H F V V + G +G SK+ AEQ AA ++E Sbjct: 180 QVVSESGPAHAKNFEVSVSVDGRLVGKGQGRSKKLAEQEAAKNAFEKEN 228 >gi|261416404|ref|YP_003250087.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372860|gb|ACX75605.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326232|gb|ADL25433.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85] Length = 270 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 6/221 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE ++GY F + LL AL H S Y + ERLEFLGD +L +L + L+ + Sbjct: 23 LEAKLGYRFRDPELLAHALVHRSFLVGKDVPYASNNERLEFLGDSVLNMLTTEFLYRTYP 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S EGELS R +++VS C+Q ++E DL+ ++++ K SI AD E+++ Sbjct: 83 SDPEGELSKRKSAIVSGHACAQSSKEWDLSEYVKIGKSEAKMGGRGKESILADAYEAVLG 142 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGG+E ++K+ R + + K+EL E+ K +PEY + G Sbjct: 143 AVYLDGGLEEVRAILNKFHFPRVQEIISATDFVNYKSELLEFCQGKLRCSPEYVIVGEEG 202 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P+H FTV V ++G + A+G +K+ AEQ A+ L+ Sbjct: 203 PEHQKVFTVEVVVNGKSYARGQGPNKKKAEQEASRLSLETL 243 >gi|239831496|ref|ZP_04679825.1| ribonuclease III [Ochrobactrum intermedium LMG 3301] gi|239823763|gb|EEQ95331.1| ribonuclease III [Ochrobactrum intermedium LMG 3301] Length = 234 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 113/228 (49%), Positives = 156/228 (68%), Gaps = 2/228 (0%) Query: 1 MSALRYST--LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 M++ + LE+R G+ F N L++ALTHSS+ + +YERLEFLGDR+LGL ++ + Sbjct: 1 MASANQAAAILEERTGHRFLNVKRLDRALTHSSVQAPSRANYERLEFLGDRVLGLTVAEM 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L++ F A EGELSVR N+LV+AETC+ +A E+ LA I SD++ + +++ADV Sbjct: 61 LYDEFPEASEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADV 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 VE+LIA +YLDGG++ FV ++WK+R+L++G RRDAKTELQEWAH + V P Y + Sbjct: 121 VEALIATIYLDGGLDAVRPFVKRFWKKRSLQTGAARRDAKTELQEWAHQQGNVHPAYSII 180 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 R+GPDHDP F V V + G A G SKR AEQ AA +L REG+W Sbjct: 181 SRTGPDHDPLFMVEVTVKGFAAETGEGRSKRIAEQHAAEAMLYREGVW 228 >gi|68171854|ref|ZP_00545186.1| Ribonuclease III [Ehrlichia chaffeensis str. Sapulpa] gi|88658070|ref|YP_507839.1| ribonuclease III [Ehrlichia chaffeensis str. Arkansas] gi|123492713|sp|Q2GFE4|RNC_EHRCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|67998723|gb|EAM85443.1| Ribonuclease III [Ehrlichia chaffeensis str. Sapulpa] gi|88599527|gb|ABD44996.1| ribonuclease III [Ehrlichia chaffeensis str. Arkansas] Length = 226 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 82/220 (37%), Positives = 116/220 (52%), Gaps = 2/220 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ K I Y F N LL +ALTH S+ + + +YERLEFLGD +L ++IS +LFN F Sbjct: 2 IESISKIIKYNFKNPQLLNEALTHPSLVSKDTLKFNYERLEFLGDAVLNIVISEMLFNIF 61 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ + +LV +VA+ ++L FI +S R + +E+LI Sbjct: 62 PKDTEGNLAKKKTALVCGNKLVEVAQSINLGQFIMMSDGERACGGINNFRNLENALEALI 121 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG A F+ +W+ A +DAKT LQE K P Y +SGP Sbjct: 122 GAIYLDGGFTAAQDFIYLFWEHSATHMNVPPQDAKTILQELVQGKRLPAPAYHTIDKSGP 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH+P FTV V I Q +K+ AEQ AA+ +L + Sbjct: 182 DHNPTFTVEVRIPSYQAIQATGHNKKLAEQKAASLMLNQI 221 >gi|295094866|emb|CBK83957.1| RNAse III [Coprococcus sp. ART55/1] Length = 229 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 115/227 (50%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M Y LEKRIGY F + LL ALTH+S ++ + ESYERLEFLGD IL ++S Sbjct: 1 MKK-DYGELEKRIGYEFKDIRLLITALTHTSFANELKVNKTESYERLEFLGDAILEYIVS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF +EG+L+ SLV T SQ++ L F+ +S + SI Sbjct: 60 DYLFRKKREYEEGKLTKLRASLVCEFTLSQISESLGYGKFVLLSKGEAQTGGRTRKSILC 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D+ ES++ A+YLDGG++VA FV ++ F + K G +Y+ Sbjct: 120 DLFESVLGAMYLDGGMDVAKKFVHQFLLDDVETKSLFYD--AKSTLQEFCQKNGKELKYE 177 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GP+H+ F I G A A+G +++ +EQ+AA + L + Sbjct: 178 LIEEKGPEHNKIFVSDALIDGQATARGEGSNRKNSEQMAAYKTLLQL 224 >gi|257870561|ref|ZP_05650214.1| ribonuclease III [Enterococcus gallinarum EG2] gi|257804725|gb|EEV33547.1| ribonuclease III [Enterococcus gallinarum EG2] Length = 230 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 103/228 (45%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M+ + L++ G F + LLE+A THSS + ++ ERLEFLGD +L L++S Sbjct: 1 MNTQLMNELKEDYGIVFHDVDLLEQAFTHSSYVNEHRNLHLSDNERLEFLGDAVLELIVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ EG+L+ ++V ++ S A++ +IR+ S+ Sbjct: 61 RYLYRELPDLPEGKLTKLRAAIVREDSLSMFAKDCRFDQYIRLGKGEENSGGRKRPSLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD G+E F+ + D KT LQE V+ Y Sbjct: 121 DLFEAFLGALYLDQGLESVDGFLTAVVFPKVKAGAFSHEMDHKTRLQEVLQRSGDVSINY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++T GP H+ F V + +G SK+ +EQ AA L Sbjct: 181 RLTKEEGPAHERIFWTEVYCDDVLIGEGQGKSKKLSEQAAAENALASL 228 >gi|303252175|ref|ZP_07338343.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648958|gb|EFL79146.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 223 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF F Sbjct: 1 MQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ L ++++ + K SI +D VE++I Sbjct: 58 PKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 118 AAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDIK 177 Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 178 GEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 220 >gi|194014593|ref|ZP_03053210.1| ribonuclease III [Bacillus pumilus ATCC 7061] gi|194013619|gb|EDW23184.1| ribonuclease III [Bacillus pumilus ATCC 7061] Length = 247 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 104/224 (46%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS LF Sbjct: 17 QFREFQQRISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+L+ ++V + +A EL + + ++ ADV E Sbjct: 77 AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G+E F++ Y + D K++LQE+ EY + Sbjct: 137 AFIGALYLDQGLEPVERFLEAYVYPKINDGAFSHVMDFKSQLQEFVQRDGKGVLEYHILH 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V + G G SK+ AEQ AA E L + Sbjct: 197 EKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHAAQEALAKL 240 >gi|157692273|ref|YP_001486735.1| ribonuclease III [Bacillus pumilus SAFR-032] gi|157681031|gb|ABV62175.1| ribonuclease III [Bacillus pumilus SAFR-032] Length = 247 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS LF Sbjct: 17 QFREFQQRISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+L+ ++V + +A EL + + ++ ADV E Sbjct: 77 AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G+E F++ Y + D K++LQE+ EY++ Sbjct: 137 AFIGALYLDQGLEPVERFLEAYVYPKINDGAFSHVMDFKSQLQEFVQRDGKGVLEYRILH 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V + G G SK+ AEQ AA E L + Sbjct: 197 EKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHAAQEALAKL 240 >gi|189043297|sp|A8Z6F6|RNC_CAMC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|158604915|gb|ABW74738.1| ribonuclease III [Campylobacter concisus 13826] Length = 223 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M E+ +GY F LLE+ALTH S + ERLEFLGD ++ LL++ LF Sbjct: 1 MK--NLEEFERNLGYKFKKSELLEEALTHKS--TKQALNNERLEFLGDAVMDLLVAEYLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV+ ++ + +AR L + F+R+S + SI +D E Sbjct: 57 KKFSKIAEGDMSKLRAALVNEKSFANMARRLKMGEFLRLSQAEENNGGREKDSILSDAFE 116 Query: 121 SLIAALYLDGG--IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+YL+ G + + +D KT LQE A GV P Y++ Sbjct: 117 AVMGAIYLEAGLLKVREISISLLELCYPQIDFAHLEKDYKTALQEVTQATLGVIPTYELI 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F + + ++G ++ + SK+ A+Q+AA L++ Sbjct: 177 GSFGPDHKKEFEIALLLNGKEISRAVGSSKKQAQQLAAKIALEKIK 222 >gi|307704936|ref|ZP_07641827.1| ribonuclease III [Streptococcus mitis SK597] gi|307621550|gb|EFO00596.1| ribonuclease III [Streptococcus mitis SK597] Length = 232 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVVKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|83858196|ref|ZP_00951718.1| ribonuclease III [Oceanicaulis alexandrii HTCC2633] gi|83853019|gb|EAP90871.1| ribonuclease III [Oceanicaulis alexandrii HTCC2633] Length = 228 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 93/223 (41%), Positives = 132/223 (59%), Gaps = 2/223 (0%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLL 59 + R E RI Y F +R LLE+ALTH+S S ERLEFLGDR+LGL+ S L Sbjct: 1 MSDRIKDFEARINYRFKDRELLERALTHASHGDGRSRAASNERLEFLGDRVLGLMASQRL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F + +EG L+ R N++V+ C++ AR DL +R+S+ + SI AD Sbjct: 61 YETFPNLEEGGLAQRLNAVVNKSACARAARRCDLGEGLRLSAAEERLGGREKESIIADAC 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++I ALYLDGG++ A F +W + + +DAK++LQEWA K P Y+ Sbjct: 121 EAVIGALYLDGGLDAAWAFFTTFWADEIDQLTRRPKDAKSQLQEWAAQKGYGVPVYETVA 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 R GPDH P F + V + G+APA+G SK+ A++ AA+E+LKR Sbjct: 181 RKGPDHRPVFEIEVRLDGVAPARGEGGSKQDAQRAAASEMLKR 223 >gi|229828999|ref|ZP_04455068.1| hypothetical protein GCWU000342_01084 [Shuttleworthia satelles DSM 14600] gi|229792162|gb|EEP28276.1| hypothetical protein GCWU000342_01084 [Shuttleworthia satelles DSM 14600] Length = 230 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 5/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 +R TLE +IGY F ++SLL +ALTHSS ++ ERLEFLGD +L ++ S L Sbjct: 1 MRNETLEAKIGYQFQDKSLLRQALTHSSFANERHMKAHSDNERLEFLGDAVLEVVSSEFL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + ++ EG L+ SLV T + ARE+ L + +R++ + SI +D + Sbjct: 61 YLNYPDLPEGRLTPLRASLVCEPTLAIAAREIGLGACLRLARGEDQSGGRERDSILSDAL 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++I A++LDGGIE A + +Y ++ K D+KT LQE A + +Y + Sbjct: 121 EAVIGAVFLDGGIEPAKALIIRYIL-TDIEHKKLYHDSKTRLQEMVQAMEEASLDYVLVR 179 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH RF + G +G SK+A+EQ AA + L Sbjct: 180 EEGPDHAKRFVTEARLDGRTIGRGEGGSKKASEQEAAYQGLLYLK 224 >gi|113461383|ref|YP_719452.1| ribonuclease III [Haemophilus somnus 129PT] gi|112823426|gb|ABI25515.1| RNAse III [Haemophilus somnus 129PT] Length = 227 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 127/229 (55%), Gaps = 7/229 (3%) Query: 1 MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M ++ L+K++G+ F N L++ALTH S + + ERLEFLGD IL I L Sbjct: 1 MKKIMQLEKLQKKLGHQFTNLDYLKQALTHRSAA---AFNNERLEFLGDSILNFAIGKAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F + EGELS +LV +T + VAR+++L ++++ + K SI +D V Sbjct: 58 YEKFPKSNEGELSRMRATLVKEQTLAVVARQVELGDYLKLGAGELKSGGFRRESILSDCV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+LIAA+YLD GI+VA V +++++ +K G+ ++D KT LQE+ PEY+V Sbjct: 118 EALIAAIYLDAGIDVALARVYQWYQELLEQIKPGEAQKDPKTRLQEFLQGHRLKLPEYEV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V ++ L G S+R AEQ AA + +++ I Sbjct: 178 IEIKGDAHNQSFRVSCKVETLTDVVFGQGTSRRKAEQHAAQQAIEKLKI 226 >gi|15903170|ref|NP_358720.1| ribonuclease III [Streptococcus pneumoniae R6] gi|116517072|ref|YP_816576.1| ribonuclease III [Streptococcus pneumoniae D39] gi|148989271|ref|ZP_01820651.1| ribonuclease III [Streptococcus pneumoniae SP6-BS73] gi|148998680|ref|ZP_01826119.1| ribonuclease III [Streptococcus pneumoniae SP11-BS70] gi|168575703|ref|ZP_02721618.1| ribonuclease III [Streptococcus pneumoniae MLV-016] gi|194398097|ref|YP_002037848.1| ribonuclease III [Streptococcus pneumoniae G54] gi|307067896|ref|YP_003876862.1| dsRNA-specific ribonuclease [Streptococcus pneumoniae AP200] gi|73917586|sp|Q8DPJ8|RNC_STRR6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122278538|sp|Q04K72|RNC_STRP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741378|sp|B5E4Y2|RNC_STRP4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|15458754|gb|AAK99930.1| Ribonuclease III [Streptococcus pneumoniae R6] gi|116077648|gb|ABJ55368.1| ribonuclease III [Streptococcus pneumoniae D39] gi|147755517|gb|EDK62565.1| ribonuclease III [Streptococcus pneumoniae SP11-BS70] gi|147925249|gb|EDK76328.1| ribonuclease III [Streptococcus pneumoniae SP6-BS73] gi|183578209|gb|EDT98737.1| ribonuclease III [Streptococcus pneumoniae MLV-016] gi|194357764|gb|ACF56212.1| ribonuclease III [Streptococcus pneumoniae G54] gi|306409433|gb|ADM84860.1| dsRNA-specific ribonuclease [Streptococcus pneumoniae AP200] Length = 232 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ FA++ LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFEIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|303251584|ref|ZP_07337758.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649582|gb|EFL79764.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 223 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++ Y F N L +ALTH S ++ ERLEFLGD IL I LF F Sbjct: 1 MQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ L ++++ + K SI +D VE++I Sbjct: 58 PKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A V +++ +K G ++D KT LQE+ + P Y+V Sbjct: 118 AAIYLDAGMDKAIAQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDIK 177 Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 178 GEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 220 >gi|227500106|ref|ZP_03930177.1| ribonuclease III [Anaerococcus tetradius ATCC 35098] gi|227217821|gb|EEI83118.1| ribonuclease III [Anaerococcus tetradius ATCC 35098] Length = 239 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFN 61 + E++IGY+F ++ L++ A THSS ++ ++S ERLEFLGD IL +++S +LF Sbjct: 10 KIEEFEEKIGYSFNDKELIDVAFTHSSYTNEVKGKKKSNERLEFLGDSILDMIVSEILFK 69 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ EG L+ + LV + ++ + ++S++ + ++ ++AD E+ Sbjct: 70 NYSQKPEGWLTKTRSRLVCTSSFAKACEKFQMSSYLNFGNGEKQGGGELKKHVKADTFEA 129 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + AA+YLD E F+ +K + D KT+LQE+ +AK +Y++T Sbjct: 130 VCAAIYLDSSYENLFNFLVTNYKAEALHVINDDSIFNDYKTKLQEYHNAKDKKILKYELT 189 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP+H FT+ V++ A G+ +K+ AEQ+AA ++ Sbjct: 190 KEEGPEHSKTFTMAVKLGNKILAYGVGKNKKQAEQMAAKAAFEKIN 235 >gi|149002616|ref|ZP_01827548.1| ribonuclease III [Streptococcus pneumoniae SP14-BS69] gi|168485011|ref|ZP_02709949.1| ribonuclease III [Streptococcus pneumoniae CDC1873-00] gi|168491168|ref|ZP_02715311.1| ribonuclease III [Streptococcus pneumoniae CDC0288-04] gi|225856914|ref|YP_002738425.1| ribonuclease III [Streptococcus pneumoniae P1031] gi|237649948|ref|ZP_04524200.1| ribonuclease III [Streptococcus pneumoniae CCRI 1974] gi|237822503|ref|ZP_04598348.1| ribonuclease III [Streptococcus pneumoniae CCRI 1974M2] gi|254807905|sp|C1CKY7|RNC_STRZP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|147759227|gb|EDK66220.1| ribonuclease III [Streptococcus pneumoniae SP14-BS69] gi|172041872|gb|EDT49918.1| ribonuclease III [Streptococcus pneumoniae CDC1873-00] gi|183574495|gb|EDT95023.1| ribonuclease III [Streptococcus pneumoniae CDC0288-04] gi|225724496|gb|ACO20348.1| ribonuclease III [Streptococcus pneumoniae P1031] gi|332200695|gb|EGJ14767.1| ribonuclease III [Streptococcus pneumoniae GA41317] gi|332201711|gb|EGJ15781.1| ribonuclease III [Streptococcus pneumoniae GA47368] Length = 232 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFNQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVIIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|332685822|ref|YP_004455596.1| ribonuclease III [Melissococcus plutonius ATCC 35311] gi|332369831|dbj|BAK20787.1| ribonuclease III [Melissococcus plutonius ATCC 35311] Length = 230 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L++R G F + +LLE+A THSS + ++ ER+EFLGD +L L+IS Sbjct: 1 MDDRLTKELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERIEFLGDAVLELIIS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + + EG+L+ ++V ++ ++ A+E +I + + +++ Sbjct: 61 QYLYQKYQNLPEGKLTKMRAAIVREDSLAKFAKECQFDQYILLGNGEENSGGRERSALLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD GIE F+ + + + + D KT LQE K V +Y Sbjct: 121 DLFEAFLGALYLDQGIETVKYFISEIIFPKIEEGNFSHEVDHKTHLQEVLQHKGDVNIDY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ GP HD F + +G SK+ AEQ AA LK Sbjct: 181 RLVDEKGPAHDRIFYTEIYADEKLIGRGHGRSKKLAEQDAAERALKEI 228 >gi|327441090|dbj|BAK17455.1| dsRNA-specific ribonuclease [Solibacillus silvestris StLB046] Length = 253 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 103/228 (45%), Gaps = 8/228 (3%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTL 58 ++ LE + F N+ LL +A THSS + ++ ERLEFLGD +L L +S Sbjct: 20 KSQFEILENEMNIHFQNKDLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKY 79 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF F EGEL+ S+V + A EL+ F+ + ++ ADV Sbjct: 80 LFEKFPHMSEGELTKLRASIVCEPSLVVFANELNFGQFVLLGKGEELTGGRERPALLADV 139 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKV 177 ES + ALYLD G+EV F+++ + D K++LQE Y++ Sbjct: 140 FESFVGALYLDQGLEVVVAFLERVVFPKVEVGAFSHVMDFKSQLQEIIQQTNNGLLNYEI 199 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKR 222 GP H+ F V ++ G SK+ AEQ AA LK+ Sbjct: 200 VDEKGPAHNRTFVSRVLLNSQELGIGRGKSKKEAEQQAAQSAMLMLKQ 247 >gi|172057915|ref|YP_001814375.1| ribonuclease III [Exiguobacterium sibiricum 255-15] gi|171990436|gb|ACB61358.1| Ribonuclease III [Exiguobacterium sibiricum 255-15] Length = 256 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 107/224 (47%), Gaps = 4/224 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFN 61 ++ L++R+ FAN LL++A THSS + +ES ERLEFLGD +L L +S LF Sbjct: 30 KFGQLQERLDIHFANVELLKQAFTHSSFVNEQRESDGDNERLEFLGDAVLELTVSRYLFQ 89 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H+ EGEL+ ++V + Q A + + I + ++ ADV E+ Sbjct: 90 HYPERSEGELTKLRAAIVCEPSLVQFANHYEFSEMILLGKGEELTGGRNRPALLADVFEA 149 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD GIE A F+ + + + + D K++LQE EY++ Sbjct: 150 FIGALYLDQGIEAAERFLAEAVFPKVASGFFEEQTDFKSQLQEAIQRVGLGQIEYEIIEE 209 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V I+ G SK+ AEQ AA + L Sbjct: 210 RGPAHSREFISRVHIADKLEGIGTGRSKKEAEQQAAKQALLELK 253 >gi|311068114|ref|YP_003973037.1| ribonuclease III [Bacillus atrophaeus 1942] gi|310868631|gb|ADP32106.1| ribonuclease III [Bacillus atrophaeus 1942] Length = 249 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 108/224 (48%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS LF Sbjct: 19 QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+L+ ++V + +A EL + + ++ ADV E Sbjct: 79 AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G+E +F+ Y + D K++LQE+ T EYK+ Sbjct: 139 AFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRDGKGTLEYKIQN 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F +V + G A G SK+ AEQ AA E L + Sbjct: 199 EKGPAHNREFEAIVSLKGEALGIGNGRSKKEAEQHAAQEALAKL 242 >gi|15901109|ref|NP_345713.1| ribonuclease III [Streptococcus pneumoniae TIGR4] gi|111658429|ref|ZP_01409108.1| hypothetical protein SpneT_02000400 [Streptococcus pneumoniae TIGR4] gi|22654070|sp|Q97QG6|RNC_STRPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|14972730|gb|AAK75353.1| ribonuclease III [Streptococcus pneumoniae TIGR4] Length = 232 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ FA++ LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD + F+ + + + D KT LQE V Y Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +V +GP HD F V V + G + QG SK+ AEQ AA +++ Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226 >gi|154686009|ref|YP_001421170.1| ribonuclease III [Bacillus amyloliquefaciens FZB42] gi|189043290|sp|A7Z4L3|RNC_BACA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|154351860|gb|ABS73939.1| Rnc [Bacillus amyloliquefaciens FZB42] Length = 249 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 107/224 (47%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ ++RI F N LL +A THSS + ++ E ERLEFLGD +L L IS LF Sbjct: 19 QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+L+ ++V + +A EL + + ++ ADV E Sbjct: 79 AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G++ F+ Y + D K++LQE+ + EYK+ Sbjct: 139 AFIGALYLDQGLDPVQQFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRDGKGSLEYKILN 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F +V + G A G SK+ AEQ AA E L + Sbjct: 199 EKGPAHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAKM 242 >gi|296273889|ref|YP_003656520.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299] gi|296098063|gb|ADG94013.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299] Length = 223 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 115/226 (50%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ Y LEK + Y F N+ L+ +ALTH S Y + ERLEFLGD +L L++ L+ Sbjct: 1 MN--DYVNLEKCLDYQFKNKDLIVEALTHKSFKKPY--NNERLEFLGDAVLNLIVGEYLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + EG+LS SLV+ +++A E+ L +I +S ++ SI +D E Sbjct: 57 KKFPQSNEGDLSKIRASLVNETGFTKLANEIKLGDYIYLSIAEERNKGRTKASILSDAFE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178 S++ A+YL+ G+E + ++ K D KT LQE A+FG P+YK+ Sbjct: 117 SIMGAIYLESGLETLKPIILTLLEKSYDKINLDVLFSDYKTALQEITQAEFGSIPDYKIE 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F V + I+ Q + SK+ A+Q A L + Sbjct: 177 GSYGPDHKKEFEVSIWINNQCYGQAIGKSKKLAQQAVAKIALDKLK 222 >gi|266623888|ref|ZP_06116823.1| ribonuclease III [Clostridium hathewayi DSM 13479] gi|288864294|gb|EFC96592.1| ribonuclease III [Clostridium hathewayi DSM 13479] Length = 229 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 5/229 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57 + + LE RIGY F +R LL +A+THSS ++ ++ E ERLEFLGD +L ++ S Sbjct: 1 MSKKLHELEGRIGYRFTDRQLLTQAMTHSSYANEHRLNKLECNERLEFLGDSVLEVVSSD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L++ + EG+L+ S+V T + A ++DL +++ + S+ +D Sbjct: 61 FLYHKYPERPEGDLTKIRASIVCEPTLAYCAEDIDLGAYLLLGKGEEATGGRGRASVVSD 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+YLDGG A F+ ++ ++ + D+KT LQE ++ Y++ Sbjct: 121 AMEALIGAIYLDGGFANAKEFILRFIMN-DIEHKQLFFDSKTILQEIVQSQTDQPLAYEL 179 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDH+ F I +G +K+AAE VAA + + W Sbjct: 180 LREEGPDHNKLFESRALIGEEEIGRGTGRTKKAAEAVAAYHGILKLKKW 228 >gi|169350084|ref|ZP_02867022.1| hypothetical protein CLOSPI_00826 [Clostridium spiroforme DSM 1552] gi|169293297|gb|EDS75430.1| hypothetical protein CLOSPI_00826 [Clostridium spiroforme DSM 1552] Length = 226 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 4/224 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60 + + + + + + ++A TH+S ++ + YERLEFLGD +L +S LF Sbjct: 1 MELEKFLQAMEIPYHDIEIFKQAFTHTSYANENKLKNHDYERLEFLGDAVLQYHVSRYLF 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + + EG L+ + LV E+ ++ ARELDL ++I + + + S+ AD+ E Sbjct: 61 DLYPTMPEGRLTKLRSKLVREESLARFARELDLGTYIYLGAGEINNGGRDRDSVLADIFE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + A+ D G+E + K + + D KT+LQE A T Y++ Sbjct: 121 AFMGAICHDCGMEYVDMMLKKTIYRHVNDVNYDDITDFKTKLQELIQADQRKTVTYELLS 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP ++P F + V + + G+ SK+ AEQ AA + L + Sbjct: 181 ATGPSNNPVFEMAVRMDDMILGTGIGSSKKRAEQQAAKDALNKL 224 >gi|205373341|ref|ZP_03226145.1| ribonuclease III [Bacillus coahuilensis m4-4] Length = 249 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 112/224 (50%), Gaps = 5/224 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG +F+N S+L++A THSS + ++ E ERLEFLGD +L L +S L+N Sbjct: 19 FKDFQEKIGISFSNVSILKQAFTHSSYVNEHRKKPFEDNERLEFLGDAVLELTVSHFLYN 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A ELD S + + ++ ADV E+ Sbjct: 79 KYATMSEGELTKLRAAIVCEPSLVKFANELDFGSVVLLGKGEELTGGRTRPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G++ F+++ + D K++LQE + EY++ Sbjct: 139 FIGALYLDQGLQSVEKFLEQIVFPKINDGAFSHVMDYKSQLQELIQREGSGQLEYRILLE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V ++ + G SK+ AEQ AA + L+ Sbjct: 199 KGPAHSKEFVSQVLLNSMEIGVGNGRSKKEAEQHAAQKALEHLK 242 >gi|168188027|ref|ZP_02622662.1| ribonuclease III [Clostridium botulinum C str. Eklund] gi|169294133|gb|EDS76266.1| ribonuclease III [Clostridium botulinum C str. Eklund] Length = 237 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 116/230 (50%), Gaps = 7/230 (3%) Query: 1 MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLI 55 M R + +E ++ F + ++L+ ALTHSS + + S ERLEFLGD IL L I Sbjct: 1 MKKNRKIILNEVENKLKVKFNDINILDTALTHSSFINENKNINSNERLEFLGDSILQLCI 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S LL+N + EG L+ + +V + +VA++ ++ +I +S TSI Sbjct: 61 SELLYNKYKDEPEGFLTKKRALIVCGNSLHEVAKKWNIGKYINMSKGEEMTGGRTRTSIL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTP 173 +D VE++IA++YLD G EVA F+ + + + S + D KT+LQE Sbjct: 121 SDCVEAIIASIYLDQGYEVAKNFILENFDEIIQKAHSNEIILDYKTKLQEIIQKFGEYNI 180 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 EY + GP H +F V + L G SK+ +EQ AA E LK Sbjct: 181 EYTLISFEGPPHRRKFVTEVSVDSLVKGIGEGYSKKESEQNAAREALKGL 230 >gi|303256999|ref|ZP_07343013.1| ribonuclease III [Burkholderiales bacterium 1_1_47] gi|330999188|ref|ZP_08322907.1| ribonuclease III [Parasutterella excrementihominis YIT 11859] gi|302860490|gb|EFL83567.1| ribonuclease III [Burkholderiales bacterium 1_1_47] gi|329575388|gb|EGG56932.1| ribonuclease III [Parasutterella excrementihominis YIT 11859] Length = 228 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 74/218 (33%), Positives = 111/218 (50%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + LE+RIGY F N+ LL +A+TH S S + ERLEFLGD +L +I LF Sbjct: 4 LTVLEERIGYTFKNKELLRRAMTHRSFSAEH---NERLEFLGDSVLNCVIGNALFLKDKH 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG LS ++LV +++A + ++ F++V + + + S AD VE++ A Sbjct: 61 FDEGSLSRVRSNLVRQSALAEIAERIGISDFLKVGAGEKHTGGNHRPSTIADAVEAIFGA 120 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ++ DGG E A T + + ++ + +DAKT LQE P Y + G Sbjct: 121 VFTDGGFEEAQTVIIRLYEPMLSQLTPTTLGKDAKTNLQEVLQRMHFGLPLYDIVEIRGA 180 Query: 184 DHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220 HD F V V+I L + G+ S+R AEQ AA + L Sbjct: 181 PHDQEFEVRVDIPDLGISLTGVGKSRRQAEQDAAQKAL 218 >gi|227484649|ref|ZP_03914965.1| ribonuclease III [Anaerococcus lactolyticus ATCC 51172] gi|227237369|gb|EEI87384.1| ribonuclease III [Anaerococcus lactolyticus ATCC 51172] Length = 237 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 6/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61 + EK IGY F +++L++ A THSS ++ + +S ERLEFLGD IL +++S LF Sbjct: 10 KIEEFEKSIGYTFNDKTLIDVAFTHSSFTNEARIKTKSNERLEFLGDTILDMVVSEYLFK 69 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ EG L+ + +V ++ ++ + DL ++R +K ++AD E+ Sbjct: 70 NYKEKPEGWLTRTRSRIVCTDSFAKACEKFDLTKYLRFGMGEKKQGGKLKKHVKADTFEA 129 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 AA+YLD + F+ + + + + D KT LQE+ +A Y++ Sbjct: 130 FCAAIYLDSSYQRLFEFLKSNYSEEVLQIINDDSLFLDYKTRLQEYYNAHSKKNLSYELI 189 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP+HD FT+ V + A AQG +K+ AEQ+AA + Sbjct: 190 KEVGPEHDKTFTMEVRLGNRALAQGEGKNKKTAEQMAAKAAYE 232 >gi|308061992|gb|ADO03880.1| ribonuclease III [Helicobacter pylori Cuz20] Length = 239 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + + D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH F + + I A SK+ AEQ A + L++ Sbjct: 196 DHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 236 >gi|167765553|ref|ZP_02437617.1| hypothetical protein CLOSS21_00047 [Clostridium sp. SS2/1] gi|317498509|ref|ZP_07956803.1| ribonuclease III [Lachnospiraceae bacterium 5_1_63FAA] gi|167712738|gb|EDS23317.1| hypothetical protein CLOSS21_00047 [Clostridium sp. SS2/1] gi|291559019|emb|CBL37819.1| RNAse III [butyrate-producing bacterium SSC/2] gi|316894202|gb|EFV16390.1| ribonuclease III [Lachnospiraceae bacterium 5_1_63FAA] Length = 228 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 111/226 (49%), Gaps = 5/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M A +++IG F S L A HSS ++ + ++ ERLEFLGD +L L+ S Sbjct: 1 MDAKSVEEFQEQIGIKFHEPSRLWNAFIHSSYANERRMSKDKNNERLEFLGDAVLELVTS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS SLV T + AR+++L ++ +S SI + Sbjct: 61 NYLYRTYQKESEGKLSKIRASLVCEPTLAGCARDINLGKYVLLSKGEDMTGGRSRDSILS 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E++I A+YLD GIE A F++ Y + F DAKT LQE + +Y Sbjct: 121 DAFEAVIGAIYLDQGIETATKFIETYLFKDVENKVLFF-DAKTNLQEIVQGEGKGRLKYV 179 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + GPDH FTV + G SK++AEQ AA E +KR Sbjct: 180 LVGEEGPDHAKIFTVEARLGENVIGTGSGHSKKSAEQHAAFEAIKR 225 >gi|227872403|ref|ZP_03990750.1| ribonuclease III [Oribacterium sinus F0268] gi|227841763|gb|EEJ52046.1| ribonuclease III [Oribacterium sinus F0268] Length = 241 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 116/235 (49%), Gaps = 10/235 (4%) Query: 1 MSAL----RYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILG 52 M + S LE+ +GY F ++ LL ALTH S S+ + S +RLEFLGD +L Sbjct: 2 MENMGSTPSLSKLEEDLGYHFQDQKLLLHALTHPSYSNEMGHPKEASNQRLEFLGDAVLE 61 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L+ STLL++ +EG ++ +LV + VA+ L L+S++ + ++ F Sbjct: 62 LVSSTLLYHKKPVIQEGRMTKLRAALVCESALAVVAKSLQLSSYLLLGKGEEREGIQFRD 121 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 S+ +D +E++I A+YLDGG++ A FV F+ + ++ Sbjct: 122 SVLSDALEAVIGAIYLDGGMKKAECFVRGKVLSDIEHKTLFQDAKTMLQEYCTAKRY--P 179 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 EY + SGP H + V V+++ G SK+ AEQ AA L++ + T Sbjct: 180 LEYDLLEESGPFHQRFYKVSVKVNEEVYGIGEGSSKKKAEQAAAYFALEKIKVET 234 >gi|77919004|ref|YP_356819.1| RNase III [Pelobacter carbinolicus DSM 2380] gi|90101632|sp|Q3A4Q8|RNC_PELCD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|77545087|gb|ABA88649.1| RNAse III [Pelobacter carbinolicus DSM 2380] Length = 232 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 6/221 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 LE I Y F N++LL +ALTH S S+ + ERLEFLGD +LG+++S +F F Sbjct: 10 LEDTIDYVFDNQALLLEALTHKSFSNEQNDRTEPDNERLEFLGDAVLGVVVSHYIFRTFP 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ + +VS + + + + + L ++R+ + +S+ A+ +E+L+ Sbjct: 70 HLPEGELTRIRSEVVSEKGLTVIGKAICLGDYMRLGKGEERSGGRQKSSLLANTMEALLG 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++ DGG + ++ + + K D KT LQE A+FG P+Y + G Sbjct: 130 AVFCDGGFDSVRRVIEALFIPHIQRAARRKTGVDYKTRLQERLQARFGDVPQYVLIHADG 189 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P H ++V G QG SK++AEQ AA + L+ Sbjct: 190 PPHQRSYSVEAHFRGSCIGQGQGRSKKSAEQAAAKQALEYL 230 >gi|296876109|ref|ZP_06900163.1| ribonuclease III [Streptococcus parasanguinis ATCC 15912] gi|296432820|gb|EFH18613.1| ribonuclease III [Streptococcus parasanguinis ATCC 15912] Length = 233 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L +R F++ SLL+ A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MEKLQ-ALLLERFQIVFSDSSLLDTAFTHTSYANEHRLLKISHNERLEFLGDAVLQLVIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + +R+ +I++ K +I Sbjct: 60 EYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDRYIKLGKGEEKSGGRDRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD G+E F+ + + D KT LQE V +Y Sbjct: 120 DLFEAFLGALLLDQGVEAVKRFIYQVMIPKVETGQFSQVIDYKTRLQELLQVHGDVEIQY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +V SGP H F V V ++G G SK+ AEQ AA ++ Sbjct: 180 QVVSESGPAHAKEFEVEVFVNGQTMGHGHGRSKKLAEQEAARNAVE 225 >gi|311693675|gb|ADP96548.1| ribonuclease 3 [marine bacterium HP15] Length = 229 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 113/229 (49%), Gaps = 7/229 (3%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 MS+ L++RIGY F + L ALTH S + ++ ERLEFLGD I+ ++I+ L Sbjct: 1 MSSQPDLDQLQRRIGYQFKSPERLLLALTHRSYGN---QNNERLEFLGDSIVNMVIAEYL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F HF+ A+EG+LS +V T +++ RE L +++R+ S K SI AD V Sbjct: 58 FLHFEKAREGQLSRLRARMVKGVTLAEIGREFQLGTYLRLGSGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ES+I A+YLD + L ++D KT LQE+ ++ P Y V Sbjct: 118 ESIIGAIYLDSDFHTCREQVLRWFEHRLEKLDLQDTQKDPKTRLQEYLQSRQFPLPRYDV 177 Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V + L G S+R AEQ AA LK G+ Sbjct: 178 ISVDGEAHNQTFHVSCALPSLDRKTTGTGSSRRVAEQQAARNALKELGV 226 >gi|317181975|dbj|BAJ59759.1| ribonuclease III [Helicobacter pylori F57] Length = 238 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 4/224 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ Sbjct: 14 NSSYATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 71 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LS S+VSA +++A+ + L ++RVSS SI + E+L Sbjct: 72 FYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEAL 131 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +A +YL+ G+ + + D KT LQE A+F V P Y++ Sbjct: 132 MAGVYLEAGLAKVRKITQNLLNRTYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 191 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 192 KGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 235 >gi|33152642|ref|NP_873995.1| ribonuclease III [Haemophilus ducreyi 35000HP] gi|73917578|sp|Q7VL75|RNC_HAEDU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|33148866|gb|AAP96384.1| ribonuclease III [Haemophilus ducreyi 35000HP] Length = 222 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 121/224 (54%), Gaps = 6/224 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L+K+IGY FAN L +ALTH S + ++ ERLEFLGD IL I LF F Sbjct: 1 MYIERLQKKIGYQFANLDYLLQALTHRSAA---AKNNERLEFLGDSILNYAIGQALFERF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ DL ++++ + K SI +D VE++I Sbjct: 58 PQANEGELSRMRATLVREQTLAILARQFDLGEYMKLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A + +++ +K G ++D KT LQE+ + PEY+V Sbjct: 118 AAIYLDAGMDKASERIYAWYQTLLDEMKPGDAQKDPKTRLQEFLQGRRLKLPEYEVLDIK 177 Query: 182 GPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREG 224 G H+ F V +I G+ S+R AEQ AA ++L + Sbjct: 178 GEAHNQIFKVSCKIETFTDIFIGIGTSRRKAEQNAAEQILLKLN 221 >gi|323484230|ref|ZP_08089599.1| hypothetical protein HMPREF9474_01350 [Clostridium symbiosum WAL-14163] gi|323692112|ref|ZP_08106358.1| ribonuclease III [Clostridium symbiosum WAL-14673] gi|323402472|gb|EGA94801.1| hypothetical protein HMPREF9474_01350 [Clostridium symbiosum WAL-14163] gi|323503835|gb|EGB19651.1| ribonuclease III [Clostridium symbiosum WAL-14673] Length = 228 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 115/227 (50%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56 M + LE++ GY F NR LL +A+THSS ++ +S ERLEFLGD +L ++ S Sbjct: 1 MDK-KLMELEEKTGYHFNNRELLGRAMTHSSYANECHKSKLECNERLEFLGDAVLEIVSS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF+ F EG+L+ S+V T + A EL L ++ + S+ + Sbjct: 60 DFLFHKFPDMPEGDLTKTRASMVCEPTLAYCAEELSLGKYLLLGKGEEATGGRNRNSVVS 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LI A+YLDGG A F+ K+ K D+KT LQE ++ Y+ Sbjct: 120 DAMEALIGAIYLDGGFASAKEFIHKFILNDMEHK-KLFYDSKTILQEIVQSRCEEGLSYQ 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GPDH+ F V +I +G +K+AAEQ+AA + + Sbjct: 179 LLREEGPDHNKMFEVAAKIGEKEIGRGTGRTKKAAEQLAAYRGILKI 225 >gi|308063545|gb|ADO05432.1| ribonuclease III [Helicobacter pylori Sat464] Length = 238 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 17 YATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 74 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 75 YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 134 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + + D KT LQE A+F V P Y++ GP Sbjct: 135 VYLEAGLAKVQKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGP 194 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH F + + I A SK+ AEQ A + L++ Sbjct: 195 DHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 235 >gi|261838098|gb|ACX97864.1| ribonuclease III [Helicobacter pylori 51] Length = 239 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ Sbjct: 15 NSSYATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 72 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LS S+VSA +++A+ + L ++RVSS SI + E+L Sbjct: 73 FYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEAL 132 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +A +YL+ G+ + + + D KT LQE A+F V P Y++ Sbjct: 133 MAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 192 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 193 KGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 236 >gi|222148081|ref|YP_002549038.1| ribonuclease III [Agrobacterium vitis S4] gi|259491897|sp|B9JUN7|RNC_AGRVS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|221735069|gb|ACM36032.1| ribonuclease III [Agrobacterium vitis S4] Length = 239 Score = 148 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 130/221 (58%), Positives = 157/221 (71%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E IGY F + L+KALTHSS + YERLEFLGDR+LGL ++ LF F +A Sbjct: 13 EKVEAVIGYHFIGKERLDKALTHSSARPAKGSDYERLEFLGDRVLGLCVAEHLFKVFRAA 72 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELSVR N LVSAETC+ VA E+ L +IR +D++K M +++ADVVESLIAA+ Sbjct: 73 TEGELSVRLNQLVSAETCAAVADEIQLHRYIRTGADVKKLTDKNMLNVRADVVESLIAAI 132 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLD G+E A FV K+W +RA + RRDAKTELQEWAHAKF VTP Y+V RSGPDHD Sbjct: 133 YLDAGLEAARAFVLKFWAERASRQDAGRRDAKTELQEWAHAKFAVTPVYRVADRSGPDHD 192 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 P FTV VEI L P G+D SKRAAEQ AA +L+REG+WT Sbjct: 193 PSFTVTVEIGKLEPETGIDRSKRAAEQAAATRLLEREGVWT 233 >gi|85068686|gb|ABC54695.1| ribonuclease III [Ehrlichia sp. P-Mtn] Length = 228 Score = 148 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 87/221 (39%), Positives = 130/221 (58%), Gaps = 3/221 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFNHF 63 + + + IGY+F N LL +ALTH S+S + +YERLEFLGD +L L+IS +LFN F Sbjct: 4 NNISEIIGYSFKNIQLLNEALTHPSVSSSKDNINFNYERLEFLGDAVLNLVISEMLFNIF 63 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ + +LV +VA+ ++L +FI +S R + +S + +E+LI Sbjct: 64 PKDTEGNLAKKKTALVCGTKLVEVAQFINLGTFIIMSDGERTCGGANNSSNLENALEALI 123 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG++ A F+ +WK A +DAKT LQEWA A+ + P Y + +SGP Sbjct: 124 GAIYLDGGLKAAKNFIFLFWKNSAKHMKVPPQDAKTILQEWAQAQGLLAPSYHIVNKSGP 183 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH+P FTV V ++ Q +K+ AEQ AA+ +L + Sbjct: 184 DHNPTFTVEVRMNSHETLQATGNNKKIAEQKAASLMLAKIN 224 >gi|317180453|dbj|BAJ58239.1| ribonuclease III [Helicobacter pylori F32] Length = 238 Score = 148 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 4/224 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ Sbjct: 14 NSSYATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 71 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LS S+VSA +++A+ + L ++RVSS SI + E+L Sbjct: 72 FYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEAL 131 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +A +YL+ G+ + + D KT LQE A+F V P Y++ Sbjct: 132 MAGVYLEAGLAKVRKITQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 191 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 192 KGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 235 >gi|163793042|ref|ZP_02187018.1| SsrA-binding protein [alpha proteobacterium BAL199] gi|159181688|gb|EDP66200.1| SsrA-binding protein [alpha proteobacterium BAL199] Length = 227 Score = 148 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 85/219 (38%), Positives = 123/219 (56%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S L + +G+ F + +L +A+TH+S +YERLEFLGDR+L L ++ L + F Sbjct: 7 DLSHLAEVLGHTFNHPDILRRAVTHASAEPRAWNAYERLEFLGDRVLALAVAEQLLDRFP 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG ++ R SLV ET + VA +DL ++ VS +I +D +E++IA Sbjct: 67 HEREGAIAKRHVSLVRRETLADVAHTIDLGRYLIVSRGEDDAGARASDTILSDSMEAVIA 126 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 ALYLDGG+ A F+ K+W + +D KT LQEWA + P Y ++GP Sbjct: 127 ALYLDGGLAAAQKFILKHWNPLLEMDHRPPQDPKTGLQEWAQGRRLPLPVYTTVEQTGPA 186 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H P FTV V + GLAP + SKR AEQ+AAA +L+ Sbjct: 187 HAPEFTVEVVVEGLAPQRASGKSKRLAEQLAAAAMLEAI 225 >gi|163802958|ref|ZP_02196845.1| ribonuclease III [Vibrio sp. AND4] gi|159173248|gb|EDP58076.1| ribonuclease III [Vibrio sp. AND4] Length = 226 Score = 148 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LE+++GY F + L+ ALTH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIEKLERKLGYQFKDAGLINLALTHRSA---NSKHNERLEFLGDSILSFVIADELY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE DL ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD IE V ++ R ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDIEAVRGIVLSWYHSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FTV +++G+ P G S+R AEQ AA L++ Sbjct: 177 NIKGEAHNQEFTVECDVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222 >gi|188585989|ref|YP_001917534.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF] gi|229564354|sp|B2A2N1|RNC_NATTJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|179350676|gb|ACB84946.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF] Length = 230 Score = 148 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 5/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 L++++G ++ LL +A+TH+S +H ++ ERLEFLGD +L L IS L+ Sbjct: 7 DIVELKEKLGIYVDDK-LLLQAVTHTSYAHEQKDVVDHNERLEFLGDAVLELAISETLYK 65 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGEL+ LV + ++A +LDL ++R+ S AD VE+ Sbjct: 66 KYPELPEGELTKLRAELVCELSLVKIAEKLDLGKYLRLGKGEDSTGGRDRRSTLADTVEA 125 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 LI A+YL + + +K + + + D KT +QE ++G P+Y++ Sbjct: 126 LIGAVYLQTNYDQTKQLILDLFKDQLSHIDNQRIGDYKTMIQELVQDRYGDPPKYQIVKE 185 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDHD F V+I+ +G SK+ AEQ AA ++ Sbjct: 186 SGPDHDKSFVAEVQINNEVVGRGSGKSKKEAEQNAAHFAFQKL 228 >gi|217033708|ref|ZP_03439135.1| hypothetical protein HP9810_5g50 [Helicobacter pylori 98-10] gi|216943897|gb|EEC23334.1| hypothetical protein HP9810_5g50 [Helicobacter pylori 98-10] Length = 238 Score = 148 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ Sbjct: 14 NSSYTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 71 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LS S+VSA +++A+ + L ++RVSS SI + E+L Sbjct: 72 FYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEAL 131 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +A +YL+ G+ + + + D KT LQE A+F V P Y++ Sbjct: 132 MAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 191 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 192 KGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 235 >gi|149194957|ref|ZP_01872050.1| ribonuclease III [Caminibacter mediatlanticus TB-2] gi|149134878|gb|EDM23361.1| ribonuclease III [Caminibacter mediatlanticus TB-2] Length = 227 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 118/220 (53%), Gaps = 4/220 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L+K +GY F + L+ +ALTH S S + + ERLE+LGD +L L++ L+N F A Sbjct: 4 EELQKSLGYQFKDEKLITEALTHRSYSKEF--NNERLEYLGDAVLDLIVGEYLYNLFPKA 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG LS +LV+ E+ ++A+ L+L ++ +S + SI + E+LI AL Sbjct: 62 EEGILSKLRAALVNEESFDKLAKRLNLGKYLFLSPAEENNKGREKPSILSSAFEALIGAL 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YL+ G + A K K+ K +D KT LQE A FGV PEY++ +GPD Sbjct: 122 YLEAGFDKAKEIALKLLKEEYPKITPEELLKDYKTTLQEITQAHFGVVPEYRLLSATGPD 181 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H F + V I+ A+ SK+AA+Q A +++ Sbjct: 182 HKKEFEIGVFINDREYARAKGRSKKAAQQEGARLTIEKLK 221 >gi|312868336|ref|ZP_07728536.1| ribonuclease III [Streptococcus parasanguinis F0405] gi|311096081|gb|EFQ54325.1| ribonuclease III [Streptococcus parasanguinis F0405] Length = 233 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L +R F++ SLL+ A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MEKLQ-ALLSERFQIVFSDSSLLDTAFTHTSYANEHRLLKISHNERLEFLGDAVLQLVIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + +R+ +I++ K +I Sbjct: 60 EYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDHYIKLGKGEEKSGGRDRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD G+E F+ + + D KT LQE V +Y Sbjct: 120 DLFEAFLGALLLDQGVEAVKRFIYQVMIPKVETGQFSQVIDYKTRLQELLQVHGDVEIQY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +V +GP H F V V ++G G SK+ AEQ AA ++ Sbjct: 180 QVVSEAGPAHAKEFEVEVFVNGQTMGHGHGRSKKLAEQEAARNAVE 225 >gi|210612575|ref|ZP_03289366.1| hypothetical protein CLONEX_01568 [Clostridium nexile DSM 1787] gi|210151500|gb|EEA82507.1| hypothetical protein CLONEX_01568 [Clostridium nexile DSM 1787] Length = 231 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 110/220 (50%), Gaps = 5/220 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHF 63 L++RIGY F + LL+ AL HSS ++ + ERLEFLGD +L L+ S LF Sbjct: 7 ELQERIGYTFRRQELLKSALMHSSYTNETHLPKYKCNERLEFLGDAVLELVSSEFLFFAD 66 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EGEL+ S+V + + ARE++L ++ + SI +D +E+LI Sbjct: 67 RKMPEGELTKTRASMVCEPSLAFCAREIELGKYLFMGRGEENTGGRERDSITSDALEALI 126 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG A F+ K+ K D+KT LQE A F Y + GP Sbjct: 127 GAIYLDGGFANAKEFILKFVLNDLEHK-KLFYDSKTILQEIVQAHFPYGVLYHLIKEEGP 185 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH+ FTV V I +G +K+AAEQ AA + + Sbjct: 186 DHNKSFTVAVHIGEECYGEGTGRTKKAAEQEAAYHAILKL 225 >gi|325478725|gb|EGC81836.1| ribonuclease III [Anaerococcus prevotii ACS-065-V-Col13] Length = 236 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61 + E +IGY+F ++ L++ A THSS ++ + +S ERLEFLGD IL +++S +LF Sbjct: 10 KIEEFENKIGYSFNDKELIDVAFTHSSYTNEARGESKSNERLEFLGDSILDMIVSEILFK 69 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H+++ EG L+ + LV + ++ + D++S++ ++ ++AD E+ Sbjct: 70 HYNNKPEGWLTKTRSRLVCTSSFAKACEKFDMSSYLNFGKGEKEHGGHLKKHVKADTFEA 129 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + AA+YLD E + K +K+ + D KT+LQE+ +AK +Y++ Sbjct: 130 VCAAIYLDSSYEKLFDILVKNYKEEALVIINDDSIFNDYKTKLQEYHNAKDKKILKYELV 189 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP+H FT+ V++ A G+ +K+ AEQ AA + Sbjct: 190 KEEGPEHAKTFTMAVKLGNRILATGVGKNKKQAEQDAAKAAYNKIK 235 >gi|323351215|ref|ZP_08086871.1| ribonuclease III [Streptococcus sanguinis VMC66] gi|322122439|gb|EFX94150.1| ribonuclease III [Streptococcus sanguinis VMC66] gi|324991496|gb|EGC23429.1| ribonuclease III [Streptococcus sanguinis SK353] gi|328946755|gb|EGG40893.1| ribonuclease III [Streptococcus sanguinis SK1087] Length = 232 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ L ++ F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENLK-KALLEQFDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD G+E +F+ + + + D KT+LQE V Y Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPKVEAGDFERVTDYKTKLQELLQINGDVEITY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +V +GP H F V V I+G QG SK+ AEQ AA ++ Sbjct: 180 QVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEK 226 >gi|84390104|ref|ZP_00991366.1| ribonuclease III [Vibrio splendidus 12B01] gi|86146359|ref|ZP_01064683.1| ribonuclease III [Vibrio sp. MED222] gi|218710569|ref|YP_002418190.1| ribonuclease III [Vibrio splendidus LGP32] gi|254807909|sp|B7VK79|RNC_VIBSL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|84376758|gb|EAP93633.1| ribonuclease III [Vibrio splendidus 12B01] gi|85835838|gb|EAQ53972.1| ribonuclease III [Vibrio sp. MED222] gi|218323588|emb|CAV19828.1| Ribonuclease III [Vibrio splendidus LGP32] Length = 225 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 118/226 (52%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LE++IGY F + L+ ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIDKLERKIGYQFNDADLIHLALTHRSAA---GKHNERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE +L ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGHTLAELGREFELGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD EV + +++ R ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAVYLDSDTEVVRRIILSWYQSRLESIQPGVSQKDPKTRLQEFLQGRRNPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222 >gi|315303706|ref|ZP_07874220.1| ribonuclease III [Listeria ivanovii FSL F6-596] gi|313627919|gb|EFR96538.1| ribonuclease III [Listeria ivanovii FSL F6-596] Length = 229 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S Sbjct: 1 MN--QWEELQESVGFYFEDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LFN + EG ++ ++V + + A + + ++R+ K ++ A Sbjct: 59 DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKGEEKAGGRTRPALLA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 DV ES I ALYLD GI TF+++ + D KT+LQE V EY Sbjct: 119 DVFESFIGALYLDNGIAKVVTFLERIIFPKIDAGAYLETVDYKTQLQEIVQRDRDVLIEY 178 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +GP H+ F V ++G +G +K+ AEQ AA + + Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226 >gi|291522183|emb|CBK80476.1| RNAse III [Coprococcus catus GD/7] Length = 233 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 114/223 (51%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 L+++I Y F + +LL ALTHSS ++ ++ ERLEFLGD +L ++ S LF Sbjct: 7 LKELQQKIDYQFKDENLLFTALTHSSYANEHKLHKIHHNERLEFLGDAVLEVVSSDFLFK 66 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +F EG++S + SLV T + AR++ L ++ + SI +D +E+ Sbjct: 67 NFPDMAEGQMSKKRASLVCEPTLAYCARQIGLGKYLMLGKGEDMGGGRNRDSILSDALEA 126 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +I ++YLDGGIE AG+F+ + +D+KT LQE Y+V + Sbjct: 127 VIGSIYLDGGIEQAGSFIMTHVLNDIEHK-AMFQDSKTILQELLQKDHKDPITYEVVDMT 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP+H+ F + V++ +G +K+AA Q AA + Sbjct: 186 GPEHNRMFVMQVKLGDRVIGKGSGRTKQAAGQEAAYHAILALK 228 >gi|225419776|ref|ZP_03762079.1| hypothetical protein CLOSTASPAR_06114 [Clostridium asparagiforme DSM 15981] gi|225041580|gb|EEG51826.1| hypothetical protein CLOSTASPAR_06114 [Clostridium asparagiforme DSM 15981] Length = 232 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56 M+ LE+ I Y F L +ALTHSS ++ ++ + ERLEFLGD +L ++ S Sbjct: 1 MNR-NLQELERTICYQFKEHGLFVQALTHSSYANEHRWNHSRCNERLEFLGDAVLEIVTS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L++ ++ EG+L+ S+V T + A ++ L ++ + S+ + Sbjct: 60 DFLYHKYEDLPEGDLTKIRASIVCEPTLAYCAGDISLGEYLLLGKGEEATGGRSRNSVVS 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LI A+YLDGG A F+ ++ + D+KT LQE ++ Y+ Sbjct: 120 DAMEALIGAIYLDGGFANAKEFIHRFILNDIEHK-QLFYDSKTILQEMVQSRSSEGLSYE 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + GPDH+ F V I G +G +K+AAEQVAA + + Sbjct: 179 ILREEGPDHNKSFEVCARIGGAEIGRGTGRTKKAAEQVAAYNGILKLK 226 >gi|260899641|ref|ZP_05908036.1| ribonuclease III [Vibrio parahaemolyticus AQ4037] gi|308110559|gb|EFO48099.1| ribonuclease III [Vibrio parahaemolyticus AQ4037] Length = 225 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LE+++GY F + L+ ALTH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIDKLERKLGYQFKDAGLINLALTHRSA---NSKHNERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE DL ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD IE + V ++ R ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDIEKVRSIVLSWYYSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222 >gi|166031773|ref|ZP_02234602.1| hypothetical protein DORFOR_01474 [Dorea formicigenerans ATCC 27755] gi|166028226|gb|EDR46983.1| hypothetical protein DORFOR_01474 [Dorea formicigenerans ATCC 27755] Length = 233 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 118/232 (50%), Gaps = 9/232 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M LE RIGY F + +LL+KA++HSS + E ERLEFLGD +L L+ S Sbjct: 3 MKR-NLKELEHRIGYTFQDFALLKKAMSHSSYVNEEHLPKYECNERLEFLGDAVLELVSS 61 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EGEL+ S+V + ARE++L ++ + S+ + Sbjct: 62 EFLFFEHPTTPEGELTKTRASMVCEPALAFCAREIELGEYLLLGKGEDATGGRKRESVTS 121 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LI A+Y+DGG A F++++ + K D+KT LQE A F Y Sbjct: 122 DAMEALIGAIYVDGGFANAKEFINRFILKDLENK-KLFYDSKTILQEIVQAHFKEELSYH 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKREGI 225 + GPDHD F V ++I G +K++AEQ AA + +L+++ I Sbjct: 181 LVGEEGPDHDKTFQVELQIGEQVYGIGKGRTKKSAEQEAAYKTILMLRKKNI 232 >gi|327463120|gb|EGF09441.1| ribonuclease III [Streptococcus sanguinis SK1] gi|327474731|gb|EGF20136.1| ribonuclease III [Streptococcus sanguinis SK408] gi|327490288|gb|EGF22076.1| ribonuclease III [Streptococcus sanguinis SK1058] gi|332362454|gb|EGJ40254.1| ribonuclease III [Streptococcus sanguinis SK1056] Length = 232 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ L ++ F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENLK-KALLEQFDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD G+E +F+ + + + D KT+LQE V Y Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPKVEAGDFERVTDYKTKLQELLQINGDVEIAY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +V +GP H F V V I+G QG SK+ AEQ AA ++ Sbjct: 180 QVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEK 226 >gi|148981907|ref|ZP_01816565.1| ribonuclease III [Vibrionales bacterium SWAT-3] gi|145960708|gb|EDK26050.1| ribonuclease III [Vibrionales bacterium SWAT-3] Length = 225 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 117/226 (51%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LE++IGY F + L+ ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIDKLERKIGYQFNDADLIHLALTHRSAA---GKHNERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE +L ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGHTLAELGREFELGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD E + +++ R ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDTETVRGIILSWYQSRLEAIQPGVSQKDPKTRLQEFLQGRRNPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222 >gi|170719010|ref|YP_001784170.1| ribonuclease III [Haemophilus somnus 2336] gi|189043321|sp|B0USS1|RNC_HAES2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|168827139|gb|ACA32510.1| Ribonuclease III [Haemophilus somnus 2336] Length = 223 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 126/225 (56%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++G+ F N L++ALTH S + + ERLEFLGD IL I L+ F Sbjct: 1 MQLEKLQKKLGHQFTNLDYLKQALTHRSAA---AFNNERLEFLGDSILNFAIGKALYEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EGELS +LV +T + VAR+++L ++++ + K SI +D VE+LI Sbjct: 58 PKSNEGELSRMRATLVKEQTLAVVARQVELGDYLKLGAGELKSGGFRRESILSDCVEALI 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD GI+VA V +++++ +K G+ ++D KT LQE+ PEY+V Sbjct: 118 AAIYLDAGIDVALARVYQWYQELLEQIKPGEAQKDPKTRLQEFLQGHRLKLPEYEVIEIK 177 Query: 182 GPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ F V ++ L G S+R AEQ AA + +++ I Sbjct: 178 GDAHNQSFRVSCKVETLTDVVFGQGTSRRKAEQHAAQQAIEKLKI 222 >gi|324993856|gb|EGC25775.1| ribonuclease III [Streptococcus sanguinis SK405] gi|325690806|gb|EGD32807.1| ribonuclease III [Streptococcus sanguinis SK115] gi|332367146|gb|EGJ44882.1| ribonuclease III [Streptococcus sanguinis SK1059] Length = 232 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ L ++ F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENLK-KALLEQFDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD G+E +F+ + + + D KT+LQE V Y Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPKVEAGDFERVTDYKTKLQELLQINGDVEITY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +V +GP H F V V I+G QG SK+ AEQ AA ++ Sbjct: 180 QVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEK 226 >gi|260913782|ref|ZP_05920258.1| ribonuclease III [Pasteurella dagmatis ATCC 43325] gi|260632321|gb|EEX50496.1| ribonuclease III [Pasteurella dagmatis ATCC 43325] Length = 225 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 114/226 (50%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L++++GY+F SLLE+ALTH S S ERLEFLGD IL L I+ L+ Sbjct: 1 MNK-NLERLQRKLGYSFNQVSLLEQALTHRSAS---INHNERLEFLGDAILNLTIAEALY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ +L ++ + K SI AD VE Sbjct: 57 HQFPKCNEGELSRMRATLVREPTLAILARKFELGDYLSLGPGELKSGGFRRESILADCVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD + V ++K +K G ++D KT LQE+ K P Y V Sbjct: 117 AIIGAISLDSNLPKTSKIVCNWYKSLLEEIKPGDNQKDPKTRLQEYLQGKRLPLPNYNVV 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H FTV + + G+ S+R AEQ AA ++L+ Sbjct: 177 DIKGEAHCQTFTVECYVKNIDRTFIGIGASRRKAEQAAAEKILQLL 222 >gi|206901475|ref|YP_002250663.1| ribonuclease III [Dictyoglomus thermophilum H-6-12] gi|206740578|gb|ACI19636.1| ribonuclease III [Dictyoglomus thermophilum H-6-12] Length = 237 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 110/221 (49%), Gaps = 5/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNH 62 S ++++ G +F N++L+ +ALTH S H + +RLEFLGD +L ++I+ +LF Sbjct: 17 LSKVKEKTGISFDNKNLIIEALTHPSFKHENPHFEYDNQRLEFLGDAVLNMIITEILFQR 76 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A EG L+ + +V ET + A+ L+L I + K SI +D+ E+ Sbjct: 77 YKEASEGILTQKRIYMVKEETLYKKAKSLNLGDLILLGKGEEKQGGREKISILSDLFEAF 136 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I ALYLD G E FV++ +++ L + K G P Y VT G Sbjct: 137 IGALYLDKGYEFTKNFVERIFREEIESVEMEID--WKNLLQSQLMKEGKKPSYIVTREEG 194 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P+H+ F V + I A+G +KR AE AA L++ Sbjct: 195 PEHNKIFYVELWIDNNKIAEGEGKTKREAEIKAAKIALEKM 235 >gi|28899346|ref|NP_798951.1| ribonuclease III [Vibrio parahaemolyticus RIMD 2210633] gi|153839958|ref|ZP_01992625.1| ribonuclease III [Vibrio parahaemolyticus AQ3810] gi|260365941|ref|ZP_05778431.1| ribonuclease III [Vibrio parahaemolyticus K5030] gi|260878963|ref|ZP_05891318.1| ribonuclease III [Vibrio parahaemolyticus AN-5034] gi|260898320|ref|ZP_05906816.1| ribonuclease III [Vibrio parahaemolyticus Peru-466] gi|31076860|sp|Q87LN9|RNC_VIBPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28807582|dbj|BAC60835.1| ribonuclease III [Vibrio parahaemolyticus RIMD 2210633] gi|149746517|gb|EDM57506.1| ribonuclease III [Vibrio parahaemolyticus AQ3810] gi|308085245|gb|EFO34940.1| ribonuclease III [Vibrio parahaemolyticus Peru-466] gi|308090440|gb|EFO40135.1| ribonuclease III [Vibrio parahaemolyticus AN-5034] gi|308113210|gb|EFO50750.1| ribonuclease III [Vibrio parahaemolyticus K5030] gi|328474121|gb|EGF44926.1| ribonuclease III [Vibrio parahaemolyticus 10329] Length = 225 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LE+++GY F + L+ ALTH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIDKLERKLGYQFKDAGLINLALTHRSA---NSKHNERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE DL ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD IE + V ++ R ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDIEKVRSIVLSWYNSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222 >gi|73667460|ref|YP_303476.1| ribonuclease III [Ehrlichia canis str. Jake] gi|90101626|sp|Q3YQX7|RNC_EHRCJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|72394601|gb|AAZ68878.1| RNAse III [Ehrlichia canis str. Jake] Length = 226 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 122/221 (55%), Gaps = 2/221 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 T+ K I Y F N LL +ALTH SI S + +YERLEFLGD +L ++IS +LFN F Sbjct: 2 IETISKTIKYHFKNPQLLHEALTHPSIISKDSLKFNYERLEFLGDAVLNIVISEMLFNIF 61 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ + +LV +VA+ ++L FI +S R + + + +E+LI Sbjct: 62 PKDTEGNLAKKKTALVCGNQLVKVAQSINLGQFIIMSDGERTCGGANNHNNLENALEALI 121 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG+ A F+ +WK A+ +DAKT LQE+ K P Y + +SGP Sbjct: 122 GAIYLDGGLTAAQNFIHSFWKHTAIHMDIPPQDAKTILQEFIQGKRLPAPTYHIIDKSGP 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH+P FTV + I Q +K+ AEQ AA+ +L + Sbjct: 182 DHNPIFTVELRIPLYKTIQATGNNKKLAEQKAASLMLNQIK 222 >gi|125718368|ref|YP_001035501.1| ribonuclease III [Streptococcus sanguinis SK36] gi|189043368|sp|A3CP46|RNC_STRSV RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|125498285|gb|ABN44951.1| Ribonuclease III, putative [Streptococcus sanguinis SK36] gi|324994823|gb|EGC26736.1| ribonuclease III [Streptococcus sanguinis SK678] gi|325687264|gb|EGD29286.1| ribonuclease III [Streptococcus sanguinis SK72] gi|325694850|gb|EGD36755.1| ribonuclease III [Streptococcus sanguinis SK150] gi|332358679|gb|EGJ36502.1| ribonuclease III [Streptococcus sanguinis SK355] gi|332358950|gb|EGJ36771.1| ribonuclease III [Streptococcus sanguinis SK49] Length = 232 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ L ++ F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENLK-KALLEQFDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD G+E +F+ + + + D KT+LQE V Y Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPKVEAGDFERVTDYKTKLQELLQINGDVEIAY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +V +GP H F V V I+G QG SK+ AEQ AA ++ Sbjct: 180 QVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEK 226 >gi|297379862|gb|ADI34749.1| ribonuclease III [Helicobacter pylori v225d] Length = 238 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 115/224 (51%), Gaps = 4/224 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ Sbjct: 14 NSSYATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 71 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LS S+VS +++A+ + L ++RVSS SI + E+L Sbjct: 72 FYQYDEGKLSKLRASIVSTHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEAL 131 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +A +YL+ G+ + + + D KT LQE A+F V P Y++ Sbjct: 132 MAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 191 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 192 KGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 235 >gi|237752001|ref|ZP_04582481.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430] gi|229376568|gb|EEO26659.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430] Length = 223 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 4/223 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + EK +GY F ++LL++ALTH S ERLEFLGD +L L+I L+N F Sbjct: 2 VNLKHFEKTLGYHFKAQNLLKEALTHKSAKKGT--HNERLEFLGDAVLDLIIGEFLYNKF 59 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +++EGELS S+V+ + +++AR L++ ++ +S+ ++ SI ++ E++I Sbjct: 60 PNSREGELSKMRASMVNEKAFAKIARYLNIGEYLFISNSEEQNNGRKKDSILSNAFEAVI 119 Query: 124 AALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YL+ G+++A + ++ D KT LQE AKFG TPEY + S Sbjct: 120 GAIYLESGLDIARNLMHNLLSAVYPSIDLNSLFYDHKTALQELTQAKFGETPEYVLLDSS 179 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH+ F + V+I G A+ SK+ A+Q+ A ++ Sbjct: 180 GPDHNKNFLIGVKIQGKEFAKASGKSKKEAQQICAKIAIEALK 222 >gi|163738238|ref|ZP_02145654.1| 4'-phosphopantetheinyl transferase [Phaeobacter gallaeciensis BS107] gi|161388854|gb|EDQ13207.1| 4'-phosphopantetheinyl transferase [Phaeobacter gallaeciensis BS107] Length = 228 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 132/224 (58%), Gaps = 1/224 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + E RIGY+F+ +LL +ALTH+S+S ++ +RLEFLGDR+LGL+++T L Sbjct: 1 MKLSKDMRAFETRIGYSFSQPALLVRALTHASVSSPNRQDNQRLEFLGDRVLGLVMATAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + +A EG+L+ RFN+LV ETC+ VAR++DL + +++ ++ D + Sbjct: 61 LDTDKAATEGQLAPRFNALVRKETCADVARDIDLGAVLKLGRSETMSGGRRKLALLGDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+Y DGG + A + + W R + RD KT LQE+A A+ P Y + Sbjct: 121 EAVIAAVYKDGGFDAAQELILRLWGNRIGRVEADARDPKTTLQEFAQARGEQPPAYVLVE 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 R+GPDH P FT+ V++ + SKR AEQ AA +L R Sbjct: 181 RTGPDHQPEFTISVQLQDGTEGRATAGSKRQAEQAAAKFLLARL 224 >gi|325696125|gb|EGD38016.1| ribonuclease III [Streptococcus sanguinis SK160] Length = 232 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ L ++ FA+ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENLK-KALLEQFDLVFADETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD G+E +F+ + + + D KT+LQE V Y Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPKVEAGDFERVTDYKTKLQELLQINGDVEIAY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +V +GP H F V V I+G QG SK+ AEQ AA ++ Sbjct: 180 QVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEK 226 >gi|304404216|ref|ZP_07385878.1| ribonuclease III [Paenibacillus curdlanolyticus YK9] gi|304347194|gb|EFM13026.1| ribonuclease III [Paenibacillus curdlanolyticus YK9] Length = 232 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 111/228 (48%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L++R+ F LL +A TH+S + ++ E ERLEFLGD +L LL+S Sbjct: 1 MRHDALDQLQQRLLIRFRQPRLLRQAFTHTSYVNEHRGKPIEDNERLEFLGDAVLQLLVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + + EGEL+ S+V + ++ A L L + + + + ++ A Sbjct: 61 EHLFLTYPNRPEGELTRMRASIVCEPSLARFADLLGLGACVLLGRGEEQLGGRHRPALLA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + A+YLD G++ F+ + + ++G +D K++LQE A T EY Sbjct: 121 DLFEAFVGAVYLDQGLDRVRLFLTERIFPQIEENGSLLVKDFKSKLQEKAQHGTLGTVEY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ GP HD F V V I G+ +K+ AEQ +A + Sbjct: 181 RIAEERGPAHDREFVVEVRIGDQPYGIGVGRTKKEAEQRSAEAACLKL 228 >gi|317178975|dbj|BAJ56763.1| ribonuclease III [Helicobacter pylori F30] Length = 232 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 116/231 (50%), Gaps = 9/231 (3%) Query: 1 MSALR-----YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55 M R Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I Sbjct: 1 MKNKRSQNSPYITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVI 58 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 LL++ F EG+LS S+VS +++A+ + L ++RVSS SI Sbjct: 59 GELLYHKFYQYDEGKLSKLRASIVSTHGFTKLAKVIALQDYLRVSSSEEISKGREKPSIL 118 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTP 173 + E+L+A +YL+ G+ + + + D KT LQE A+F V P Sbjct: 119 SSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIP 178 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y++ GPDH F + + I A SK+ AEQ A + L++ Sbjct: 179 TYQLLKEKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 229 >gi|57234229|ref|YP_181741.1| ribonuclease III [Dehalococcoides ethenogenes 195] gi|90101623|sp|Q3Z7Q8|RNC_DEHE1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|57224677|gb|AAW39734.1| ribonuclease III [Dehalococcoides ethenogenes 195] Length = 237 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLL 59 L + LEK +G F N SLLE+AL H+S + ER+EFLGD +LG++ + L Sbjct: 2 LDLTELEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRL 61 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F +EG+L+ + LV E+ +VA ++L ++ + F + A Sbjct: 62 YHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDASKGRFKPANLAGAF 121 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177 E+++AA+YLD GI+ + + +K + D K+ LQE A+F +TP Y++ Sbjct: 122 EAVLAAIYLDKGIDATREVIFRLFKTEMERVQTLSSNIDYKSRLQELVQAQFQLTPRYRI 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP+H+ F V A+G SK+ AE AA E L++ Sbjct: 182 IDFSGPEHNHLFIAEVYTEDKVLAEGSGRSKKEAETSAAKEALQQ 226 >gi|50913818|ref|YP_059790.1| ribonuclease III [Streptococcus pyogenes MGAS10394] gi|56808931|ref|ZP_00366639.1| COG0571: dsRNA-specific ribonuclease [Streptococcus pyogenes M49 591] gi|139474237|ref|YP_001128953.1| ribonuclease III [Streptococcus pyogenes str. Manfredo] gi|209559002|ref|YP_002285474.1| ribonuclease III [Streptococcus pyogenes NZ131] gi|255591218|ref|XP_002535468.1| ribonuclease III, putative [Ricinus communis] gi|306827819|ref|ZP_07461089.1| ribonuclease III [Streptococcus pyogenes ATCC 10782] gi|73917584|sp|Q5XDA6|RNC_STRP6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043367|sp|A2RFW8|RNC_STRPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741379|sp|B5XKB7|RNC_STRPZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|50902892|gb|AAT86607.1| Ribonuclease III [Streptococcus pyogenes MGAS10394] gi|134272484|emb|CAM30747.1| ribonuclease III [Streptococcus pyogenes str. Manfredo] gi|209540203|gb|ACI60779.1| Ribonuclease III [Streptococcus pyogenes NZ131] gi|223523016|gb|EEF26915.1| ribonuclease III, putative [Ricinus communis] gi|304429989|gb|EFM33028.1| ribonuclease III [Streptococcus pyogenes ATCC 10782] Length = 230 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 114/226 (50%), Gaps = 9/226 (3%) Query: 7 STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 LE+ + F + +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 2 KQLEELLSTSFDIQFNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + EG++S + +V E+ + +R ++I++ K +I D+ Sbjct: 62 LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDL 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD GI+ F+ + + K + + +D KT LQE+ K V +Y+V Sbjct: 122 FEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQTKGDVVIDYQV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V + ++G ++G+ SK+ AEQ AA L + Sbjct: 182 ISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQL 227 >gi|71903092|ref|YP_279895.1| ribonuclease III [Streptococcus pyogenes MGAS6180] gi|90101651|sp|Q48UR6|RNC_STRPM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71802187|gb|AAX71540.1| ribonuclease III [Streptococcus pyogenes MGAS6180] Length = 230 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 114/226 (50%), Gaps = 9/226 (3%) Query: 7 STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 LE+ + F + +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 2 KQLEELLSTSFDIQFNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + EG++S + +V E+ + +R ++I++ K +I D+ Sbjct: 62 LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDL 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD GI+ F+ + + K + + RD KT LQE+ K V +Y+V Sbjct: 122 FEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVRDYKTCLQEFLQTKGDVAIDYQV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V + ++G ++G+ SK+ AEQ AA L + Sbjct: 182 ISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQL 227 >gi|91201952|emb|CAJ75012.1| similar to ribonuclease III [Candidatus Kuenenia stuttgartiensis] Length = 236 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 126/224 (56%), Gaps = 3/224 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + ++ + IGY+F LLEKALTH+S S ERLEFLGD +LG++IS L+ Sbjct: 9 NPEKFIACQNIIGYSFKKMLLLEKALTHTSCRVENNFSNERLEFLGDAVLGMIISDYLYK 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EGEL+ + +VS T ++V E L F+ V L F S+ A+V E+ Sbjct: 69 TMPHYSEGELTNVKSVVVSQSTLAKVGMEAGLKEFLLVGRGLNDRDL-FPKSLLANVFEA 127 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LIAA+Y+DGGIE A F +Y K+ + +++ K+ LQ+++ ++G+TP Y++ Sbjct: 128 LIAAIYIDGGIEAASEFTLRYLKKEIDLVCKNQHKKNYKSILQQYSQKEYGITPTYRLLQ 187 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GPDH F +VV I G +G SK+ AEQ AA E LK Sbjct: 188 QIGPDHGKSFEIVVSIKGSEYGRGWGKSKKEAEQSAAKEALKIL 231 >gi|15674631|ref|NP_268805.1| ribonuclease III [Streptococcus pyogenes M1 GAS] gi|19745653|ref|NP_606789.1| ribonuclease III [Streptococcus pyogenes MGAS8232] gi|21909911|ref|NP_664179.1| ribonuclease III [Streptococcus pyogenes MGAS315] gi|28896390|ref|NP_802740.1| ribonuclease III [Streptococcus pyogenes SSI-1] gi|71910251|ref|YP_281801.1| ribonuclease III [Streptococcus pyogenes MGAS5005] gi|94988068|ref|YP_596169.1| ribonuclease III [Streptococcus pyogenes MGAS9429] gi|94991954|ref|YP_600053.1| ribonuclease III [Streptococcus pyogenes MGAS2096] gi|94993854|ref|YP_601952.1| ribonuclease III [Streptococcus pyogenes MGAS10750] gi|54039244|sp|P66671|RNC_STRP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54039245|sp|P66672|RNC_STRP8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54041616|sp|P66670|RNC_STRP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043363|sp|Q1JCZ9|RNC_STRPB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043364|sp|Q1JMX4|RNC_STRPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043366|sp|Q1J7V3|RNC_STRPF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|13621744|gb|AAK33526.1| putative ribonuclease III [Streptococcus pyogenes M1 GAS] gi|19747784|gb|AAL97288.1| putative ribonuclease III [Streptococcus pyogenes MGAS8232] gi|21904099|gb|AAM78982.1| putative ribonuclease III [Streptococcus pyogenes MGAS315] gi|28811641|dbj|BAC64573.1| putative ribonuclease III [Streptococcus pyogenes SSI-1] gi|71853033|gb|AAZ51056.1| ribonuclease III [Streptococcus pyogenes MGAS5005] gi|94541576|gb|ABF31625.1| ribonuclease III [Streptococcus pyogenes MGAS9429] gi|94545462|gb|ABF35509.1| Ribonuclease III [Streptococcus pyogenes MGAS2096] gi|94547362|gb|ABF37408.1| Ribonuclease III [Streptococcus pyogenes MGAS10750] Length = 230 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 114/226 (50%), Gaps = 9/226 (3%) Query: 7 STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 LE+ + F + +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 2 KQLEELLSTSFDIQFNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + EG++S + +V E+ + +R ++I++ K +I D+ Sbjct: 62 LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDL 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD GI+ F+ + + K + + +D KT LQE+ K V +Y+V Sbjct: 122 FEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQTKGDVAIDYQV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V + ++G ++G+ SK+ AEQ AA L + Sbjct: 182 ISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQL 227 >gi|218132444|ref|ZP_03461248.1| hypothetical protein BACPEC_00303 [Bacteroides pectinophilus ATCC 43243] gi|217992554|gb|EEC58556.1| hypothetical protein BACPEC_00303 [Bacteroides pectinophilus ATCC 43243] Length = 234 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 7/228 (3%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLI 55 M+ + + L++ +GY+F + SLL+ ALTHSS ++ + + ERLEFLGD +L L+ Sbjct: 7 MNHSTDLNELQQAMGYSFDDVSLLKHALTHSSYANELRINKTGNNERLEFLGDAVLELVS 66 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S LFN EG LS S+V + + AR++ L +I + SI Sbjct: 67 SEYLFNEHKDVNEGSLSKLRASMVCEPSLAFCARDISLQKYIMLGKGEDATGGRQRDSIT 126 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 +D +E++I A+YLDGG E A F+ + F + + TPEY Sbjct: 127 SDALEAVIGAIYLDGGFEPAKKFIMAHVLNDLDNKKLFYDS--KTILQEILQADNKTPEY 184 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++T GP+H F+ V G +K+AAEQ AA + + R Sbjct: 185 RITGEEGPEHSKTFSAEVLDGSTVLGHGSGHNKKAAEQQAAYDAILRL 232 >gi|260886608|ref|ZP_05897871.1| ribonuclease III [Selenomonas sputigena ATCC 35185] gi|330839558|ref|YP_004414138.1| ribonuclease III [Selenomonas sputigena ATCC 35185] gi|260863751|gb|EEX78251.1| ribonuclease III [Selenomonas sputigena ATCC 35185] gi|329747322|gb|AEC00679.1| ribonuclease III [Selenomonas sputigena ATCC 35185] Length = 242 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 109/225 (48%), Gaps = 6/225 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 L +G F N LL +ALTH+S ++ + ERLEFLGD +L L ST LF Sbjct: 16 LIELSDHLGIEFQNIVLLHEALTHTSYANEAKNKGVVHNERLEFLGDAVLELATSTYLFE 75 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F + EGEL+ S+V T S+ A EL+L ++ + S+ AD E+ Sbjct: 76 RFPNRPEGELTKARASIVREATLSRRAAELELGEYLLLGHGEASMGGGHRPSMLADAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A+YLD G + A +V K + SG+ +D KT LQE Y++ Sbjct: 136 VIGAIYLDRGWQTAYDYVLKQLHDELLTIDSGENMKDYKTTLQEVVQKHVDSKIAYELLT 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +GPDHD F V I+ G +K+ AEQ AA E L++ Sbjct: 196 ETGPDHDKTFEFAVRINDAVYGTGKGRNKKEAEQGAAREALRKMK 240 >gi|94989948|ref|YP_598048.1| ribonuclease III [Streptococcus pyogenes MGAS10270] gi|189043365|sp|Q1JI19|RNC_STRPD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|94543456|gb|ABF33504.1| Ribonuclease III [Streptococcus pyogenes MGAS10270] Length = 230 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 9/226 (3%) Query: 7 STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 LE+ + F + +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 2 KQLEELLSTSFDIQFNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + EG++S + +V E+ + +R ++I++ K +I D+ Sbjct: 62 LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDL 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD GI+ F+ + + K + + +D KT LQE+ AK V +Y+V Sbjct: 122 FEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQAKGDVVIDYQV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V + ++G ++G+ SK+ AEQ AA L + Sbjct: 182 ISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQL 227 >gi|224438391|ref|ZP_03659318.1| ribonuclease III [Helicobacter cinaedi CCUG 18818] gi|313144833|ref|ZP_07807026.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818] gi|313129864|gb|EFR47481.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818] Length = 242 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 4/221 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LEK++GY F ++ LL +ALTH S ++Y + ERLEFLGD +L LL+ LF F Sbjct: 9 NAQALEKKLGYTFKDKKLLLEALTHKSCKNAY--NNERLEFLGDAVLDLLVGEFLFRKFP 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 SAKEGELS +V+ + ++A+ LDL +F+ +S + SI ++ E+L+ Sbjct: 67 SAKEGELSKLRACIVNEKGFMKLAKSLDLGAFLHISQSEEHNKGREKASILSNAFEALMG 126 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL+ + V K +Q K D KT LQE A FG P Y + SG Sbjct: 127 AIYLESELTFLKDIVLKLLEQNYAKIDLRSLFTDYKTALQELTQAIFGEIPTYTLVSESG 186 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH F + + ++G+ A+ SK+ A+Q +A ++ Sbjct: 187 PDHQKSFEIALSVNGVEYARAKGSSKKDAQQKSAQIAYEKI 227 >gi|188527489|ref|YP_001910176.1| ribonuclease III [Helicobacter pylori Shi470] gi|238691923|sp|B2UTG4|RNC_HELPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|188143729|gb|ACD48146.1| ribonuclease III [Helicobacter pylori Shi470] Length = 238 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 115/221 (52%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 17 YATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 74 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++ +SS SI + E+L+A Sbjct: 75 YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLHISSSEEISNGREKPSILSSAFEALMAG 134 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + + D KT LQE A+F V P Y++ GP Sbjct: 135 VYLEAGLAKVQKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGP 194 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH F + + I A SK+ AEQ A + L++ Sbjct: 195 DHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 235 >gi|261839511|gb|ACX99276.1| ribonuclease III [Helicobacter pylori 52] Length = 239 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 115/224 (51%), Gaps = 4/224 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ Sbjct: 15 NSSYITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 72 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LS ++VSA +++A+ + L ++RVSS SI + E+L Sbjct: 73 FYQYDEGKLSKLRAAIVSAHGFTKLAKIIALQDYLRVSSSEEISNGREKPSILSSAFEAL 132 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +A +YL+ G+ + + + D KT LQE A+F V P Y++ Sbjct: 133 MAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 192 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 193 KGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 236 >gi|7531276|sp|P56118|RNC_HELPY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 239 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ Sbjct: 15 NSSYTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 72 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LS S+VSA +++A+ + L ++RVSS SI + E+L Sbjct: 73 FYQYDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEAL 132 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +A +YL+ G+ + + + D KT LQE A+F V P Y++ Sbjct: 133 MAGVYLEAGLAKVQKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 192 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 193 KGPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLK 236 >gi|332673509|gb|AEE70326.1| ribonuclease III [Helicobacter pylori 83] Length = 239 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 114/224 (50%), Gaps = 4/224 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ Sbjct: 15 NSSYITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 72 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LS S+VSA +++A+ + L ++RVSS SI + E+L Sbjct: 73 FYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEAL 132 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +A +YL+ G+ + + D KT LQE A+F V P Y++ Sbjct: 133 MAGVYLEAGLAKVRKITQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 192 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 193 KGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 236 >gi|291533418|emb|CBL06531.1| RNAse III [Megamonas hypermegale ART12/1] Length = 240 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 6/228 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLL 59 + L R+G F + +LL +ALTH+S ++ ++ ERLEFLGD +L L ST L Sbjct: 8 KQKLGELVVRLGVKFNDLNLLNQALTHTSYANEAKDHSLHNERLEFLGDAVLELASSTYL 67 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F EGE++ S+V + +++A L++ ++ + R SI AD Sbjct: 68 FKTFTQMPEGEMTKARASVVCETSLAKLAMNLNVGQYLLLGKGERLTGGEHRPSILADAF 127 Query: 120 ESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ES+I A+YLD G + A +V ++ + + + G EYK+ Sbjct: 128 ESIIGAIYLDQGWQTAYEYVLDKLNEEFIAVKYGYNLKDYKTILQEVVQAKGQHVEYKLL 187 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 +GPDH F V + +G +K+ AEQ AA E LK+ IW Sbjct: 188 AETGPDHAKTFEFAVVVDKKIDGKGKGTTKKEAEQHAAYEALKK--IW 233 >gi|327470651|gb|EGF16107.1| ribonuclease III [Streptococcus sanguinis SK330] Length = 232 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ L ++ F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENLK-KALLEQFDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD G+E +F+ + + + D KT+LQE V Y Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPKVEAGDFERVTDYKTKLQELLQINGDVEIAY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +V +GP H F V V I+G QG SK+ AEQ AA K+ Sbjct: 180 QVVSETGPAHAKNFEVAVLINGCKSGQGQGRSKKLAEQEAAKNAFKK 226 >gi|163740176|ref|ZP_02147570.1| ribonuclease III [Phaeobacter gallaeciensis 2.10] gi|161386034|gb|EDQ10409.1| ribonuclease III [Phaeobacter gallaeciensis 2.10] Length = 228 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 131/224 (58%), Gaps = 1/224 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + E RIGY+F+ +LL +ALTH+S+S ++ +RLEFLGDR+LGL+++T L Sbjct: 1 MKLSKDMRAFETRIGYSFSQPALLVRALTHASVSSPNRQDNQRLEFLGDRVLGLVMATAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + +A EG+L+ RFN+LV ETC+ VAR++DL + +++ ++ D + Sbjct: 61 LDTDKAATEGQLAPRFNALVRKETCADVARDIDLGAVLKLGRSETMSGGRRKLALLGDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+Y DGG + A + + W R + RD KT LQE+A A+ P Y + Sbjct: 121 EAVIAAVYKDGGFDAAQELILRLWGNRIGRVEADARDPKTTLQEFAQARGEQPPAYVLVE 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 R GPDH P FT+ V++ + SKR AEQ AA +L R Sbjct: 181 RKGPDHQPEFTISVQLQDGTEGRATAGSKRQAEQAAAKFLLARL 224 >gi|255281054|ref|ZP_05345609.1| ribonuclease III [Bryantella formatexigens DSM 14469] gi|255268502|gb|EET61707.1| ribonuclease III [Bryantella formatexigens DSM 14469] Length = 230 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 111/220 (50%), Gaps = 5/220 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 MS S LE+ GY+F ++ LLE AL HSS ++ +++ ERLEFLGD +L L S Sbjct: 1 MSR-DISELEQMTGYSFKDKELLENALRHSSYANEHKKYHLKDNERLEFLGDAVLELSSS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ H+ KEGE++ S+V T +Q A ++L SF+R+ + S+ + Sbjct: 60 EYLYRHYPKMKEGEMTKLRASIVCEPTLAQCAAAIELGSFLRLGRGEEQTGGRHRDSVVS 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LI A++LDGG A FV+++ F + + G Y Sbjct: 120 DAMEALIGAIFLDGGFTSAKEFVNRFILNGVEHKKLFFDSKTILQEIVQSSYKGEAMSYH 179 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + GP+HD F V + I +G +K++AEQ AA Sbjct: 180 LLREEGPEHDKTFVVQLFIGDKGFEEGRGRTKKSAEQEAA 219 >gi|315586658|gb|ADU41039.1| ribonuclease III [Helicobacter pylori 35A] Length = 238 Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 4/224 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ Sbjct: 14 NSSYITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 71 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LS S+VSA +++A+ + L ++RVSS SI + E+L Sbjct: 72 FYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEAL 131 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +A +YL+ G+ + + + D KT LQE A+F V P Y++ Sbjct: 132 MAGVYLEAGLAKVCKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 191 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 192 KGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 235 >gi|83644632|ref|YP_433067.1| ribonuclease III [Hahella chejuensis KCTC 2396] gi|123534042|sp|Q2SL32|RNC_HAHCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|83632675|gb|ABC28642.1| ribonuclease III [Hahella chejuensis KCTC 2396] Length = 226 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L++ +GY F +LL ALTH S + ERLEFLGD +L +I+ LF F+ Sbjct: 4 KLERLQRALGYTFKEPALLTLALTHRSFG---GRNNERLEFLGDSVLNFIIADYLFGRFE 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A+EG+LS +V T +++ARE DL ++R+ S K SI AD +ES+I Sbjct: 61 EAREGQLSRLRARMVKGVTLAEIAREFDLGEYLRLGSGEMKSGGFRRESILADALESIIG 120 Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G EV + + L ++D+KT LQE+ A+ P Y+V G Sbjct: 121 AIYLDAGFEVCADRVLNWFEARLQKLNLKDTQKDSKTRLQEYLQARQLNLPRYEVISVQG 180 Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225 H F V EI GL+ A +G S+R AEQ AA + L G+ Sbjct: 181 EAHAQTFHVRCEIDGLSDATEGTGSSRRVAEQKAAKQALLALGV 224 >gi|296133569|ref|YP_003640816.1| ribonuclease III [Thermincola sp. JR] gi|296032147|gb|ADG82915.1| ribonuclease III [Thermincola potens JR] Length = 245 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 109/227 (48%), Gaps = 7/227 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + L +G + + LL ALTHSS +H + E +RLEFLGD +L L+IS L+ Sbjct: 9 KIDELIGVMGIDWTSPELLVTALTHSSYAHENKREPIEHNQRLEFLGDAVLELVISEYLY 68 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F + EG L+ +V + + VAR ++L +I + + SI AD +E Sbjct: 69 DRFPTYPEGVLTKMRAGIVCESSLASVARAMNLGQYILMGKGEERSGGRNRPSILADAME 128 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKV 177 ++ A+YLD G+E F+ ++ K D KTELQE K T Y + Sbjct: 129 AIFGAVYLDQGLETTKLFIINTLSEQISKVVAKGGQTGDYKTELQELVQQKADNTLTYAI 188 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH+ FT V G G +K+ AEQ AA + L++ Sbjct: 189 IGEEGPDHNKVFTAGVYCHGKIWGVGKGRTKKEAEQAAAHDALEKIK 235 >gi|322385039|ref|ZP_08058689.1| ribonuclease III [Streptococcus cristatus ATCC 51100] gi|321270949|gb|EFX53859.1| ribonuclease III [Streptococcus cristatus ATCC 51100] Length = 229 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 111/227 (48%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ L ++ G F + SLLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MEQLK-DALLEQFGLVFEDSSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYKKYPKKPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD +E F+ + + + D KT+LQE V Y Sbjct: 120 DLFEAFLGALLLDKDVETVKAFIYQVMIPKVEAGDFEQVTDYKTKLQELLQVNGDVEIVY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +VT +GP H F V V I+G QG SK+ AEQ AA + ++ Sbjct: 180 QVTDETGPAHAKNFAVAVLINGQKAGQGQGRSKKLAEQEAAKDAFEK 226 >gi|58617572|ref|YP_196771.1| ribonuclease III [Ehrlichia ruminantium str. Gardel] gi|75432734|sp|Q5FGH0|RNC_EHRRG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|58417184|emb|CAI28297.1| Ribonuclease III [Ehrlichia ruminantium str. Gardel] Length = 227 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 83/220 (37%), Positives = 124/220 (56%), Gaps = 2/220 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + K I Y F N LL +ALTH S+ + +YERLEFLGD +L L++S +LFN F Sbjct: 4 NAISKIIKYDFKNTQLLNEALTHPSVLSKDNNNFNYERLEFLGDAVLNLVVSEMLFNIFP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +LV ++A+ ++L FI +S R + ++ + +E+LI Sbjct: 64 YDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIG 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG++ A F+ +WK A +DAKT LQEWA +K P Y + +SGPD Sbjct: 124 AIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPD 183 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H+P FTV V I+ +K+ AEQ AA+ +L + Sbjct: 184 HNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAKIN 223 >gi|319939366|ref|ZP_08013726.1| ribonuclease 3 [Streptococcus anginosus 1_2_62CV] gi|319811352|gb|EFW07647.1| ribonuclease 3 [Streptococcus anginosus 1_2_62CV] Length = 232 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 5/219 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L ++ G F + LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ + Sbjct: 8 LSQQFGIVFQDEKLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLISEYLYKKYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +++V E+ + +R+ FI++ K +I D+ E+ + Sbjct: 68 KKPEGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AL LD G+E F+ + + + D KT+LQE V Y+V SGP Sbjct: 128 ALLLDKGVEAVKNFLYQVMIPKVEVGDFEQVVDYKTKLQELLQVNGDVEIVYQVISESGP 187 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H F V V + G QG SK+ AEQ AA ++ Sbjct: 188 AHAKEFAVAVSVDGRTVGQGQGRSKKLAEQEAAKNAFEK 226 >gi|268680594|ref|YP_003305025.1| ribonuclease III [Sulfurospirillum deleyianum DSM 6946] gi|268618625|gb|ACZ12990.1| ribonuclease III [Sulfurospirillum deleyianum DSM 6946] Length = 227 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L+KR+GY F N++L+ +ALTH S + ERLEFLGD +L L++ L+ F Sbjct: 4 KLEALQKRLGYQFKNQNLIIEALTHKS--SKQPYNNERLEFLGDAVLDLIVGEYLYKEFL 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGELS SLV+ ++ ++AR L L I +S + S+ ++ E++I Sbjct: 62 GVAEGELSKLRASLVNEKSFEKLARLLHLGESIYISLAEENNNGREKPSLLSNAFEAIIG 121 Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALYL+ G+E A T ++ RD KT LQE A FGVTPEY++ G Sbjct: 122 ALYLEAGLEKARTLAISLLEEAYPKIDMDAIFRDHKTTLQELTQAHFGVTPEYRLVRSFG 181 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH F + V + G + SK+ A+Q AA L+ Sbjct: 182 PDHQKEFEIAVSVRGSDLSLASGKSKKEAQQKAALLALEILK 223 >gi|308182848|ref|YP_003926975.1| ribonuclease III [Helicobacter pylori PeCan4] gi|308065033|gb|ADO06925.1| ribonuclease III [Helicobacter pylori PeCan4] Length = 239 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA+ +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAQGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + + D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPIYQLLKEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH F + + I A SK+ AEQ A + L++ Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLK 236 >gi|312897519|ref|ZP_07756939.1| ribonuclease III [Megasphaera micronuciformis F0359] gi|310621371|gb|EFQ04911.1| ribonuclease III [Megasphaera micronuciformis F0359] Length = 238 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 10/234 (4%) Query: 1 MSALR---YSTLEKRIGY-AFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILG 52 M+ R KR+ F + LL++ALTHSS ++ + ERLEFLGD +L Sbjct: 1 MNKARREQLRNFTKRLNIGPFTDWHLLDQALTHSSYTNEDKTHHSMHNERLEFLGDAVLD 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 +++ L+ + EG L+ S+VS E + V + ++R+ Sbjct: 61 MVVGEYLYRRYPDMPEGNLTKARASIVSEEPLACVCAGFHMGDYLRLGKGEALTGGRTRN 120 Query: 113 SIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 SI AD E+++ A+Y+D + ++ G + +D KT QE Sbjct: 121 SIMADAFEAVVGAIYMDCSYSAARDFILTQLERYLQLVEKGIYGKDYKTYFQELLQRDGA 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +Y + GPDH+ F + V ++G G +K++AEQ AA L++ Sbjct: 181 QDIKYHLCHEEGPDHNKTFFMEVIVNGTTMGMGSGKTKKSAEQHAAYAALEKMN 234 >gi|319758292|gb|ADV70234.1| dsRNA-specific ribonuclease [Streptococcus suis JS14] Length = 228 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 6/229 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L ++ L G F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MKDL-HAKLLDDFGIDFSDLNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLMIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EGE+S ++ V E+ + +R F+R+ K +I Sbjct: 60 KYLYQKYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD G + F+ K R + + D KT LQE + Y Sbjct: 120 DAFEAFLGALLLDKGEKTVEEFIHKVMIPRLEKGNFERVTDYKTALQEILQVNGEIAISY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +V SGP HD F V V +G SK+ AEQ AA ++ G Sbjct: 180 QVIAESGPAHDKTFEVEVSADQRVIGRGRGRSKKLAEQAAAKNAVEARG 228 >gi|154173754|ref|YP_001409228.1| ribonuclease III [Campylobacter curvus 525.92] gi|189043298|sp|A7H186|RNC_CAMC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|112803490|gb|EAU00834.1| ribonuclease III [Campylobacter curvus 525.92] Length = 223 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 113/226 (50%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L+K +GY F N LL +ALTH S S ERLEFLGD ++ L++ LF Sbjct: 1 MK--DLENLQKLLGYEFENTKLLNEALTHKS--TKLPYSNERLEFLGDAVMDLIVGEYLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV+ ++ + +AR L + FI +S+ + S+ +D E Sbjct: 57 KKFSKTNEGDMSKLRAALVNEKSFANMARHLQIGEFIHLSTAEANNGGREKASLLSDAFE 116 Query: 121 SLIAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+YL+ G++ + + +D KT LQE A G TP Y++ Sbjct: 117 AVMGAVYLEAGLDKVREIAVRLLEICYPKIDFSHLVKDYKTALQEITQASLGTTPIYELV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F + + ++ ++ + SK+ A+Q+AA L++ Sbjct: 177 RSFGPDHKKEFEIALLLNDKEISRAIANSKKEAQQMAAKIALEKMK 222 >gi|153954021|ref|YP_001394786.1| ribonuclease III [Clostridium kluyveri DSM 555] gi|219854635|ref|YP_002471757.1| hypothetical protein CKR_1292 [Clostridium kluyveri NBRC 12016] gi|189043304|sp|A5N807|RNC_CLOK5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807246|sp|B9E1G8|RNC_CLOK1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|146346902|gb|EDK33438.1| Hypothetical protein CKL_1396 [Clostridium kluyveri DSM 555] gi|219568359|dbj|BAH06343.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 244 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 5/229 (2%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57 M + + +EK + +F ++ L++ ALTHSS ++ + + ER+EFLGD +L L IS Sbjct: 1 MEKVNFFEEVEKTLNISFNDKELIDTALTHSSYANGKKGVKFNERMEFLGDSVLQLCISE 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + S EGEL+ + + +V + +VA++ ++ +I++S TSI A+ Sbjct: 61 YLFLIYKSKSEGELTKKRSLIVCENSLYEVAKKWNIGKYIKMSKGEEITGGRERTSILAN 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEY 175 VE++IAA+Y+D G + F+ +K K+ K + D KT LQE + EY Sbjct: 121 CVEAIIAAIYIDSGYKKTKQFIIDNFKDIIEKAIKNQIVLDYKTNLQEIVQQDGDIHIEY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + GP H +F V ++ G+ +K+ +EQ AA + LK+ Sbjct: 181 MLIKYEGPPHRRKFYTKVCVANNVMGSGVGYTKKESEQNAAQDALKKLK 229 >gi|114570121|ref|YP_756801.1| ribonuclease III [Maricaulis maris MCS10] gi|114340583|gb|ABI65863.1| RNAse III [Maricaulis maris MCS10] Length = 228 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 106/221 (47%), Positives = 136/221 (61%), Gaps = 2/221 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + LE+RIGY F ++ L+E+ALTH S + + +YERLEFLGDR+LGL+ + LF F Sbjct: 5 IARLEQRIGYVFTDKRLIERALTHGSFAEGRKTIPTYERLEFLGDRVLGLMTAEALFKSF 64 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 D A EG L+ R NS+V ETC+ VAR +DL + +R+ K TSI D ESL+ Sbjct: 65 DKADEGALAPRLNSMVRKETCADVARAVDLGAALRIGKSEEKGGGRNKTSILGDACESLM 124 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AA+YLDGG F D +W R DAK+ LQEWA P Y++T RSGP Sbjct: 125 AAIYLDGGRAAVQAFFDHHWGPRIEALKAKPLDAKSALQEWAAKTGRGVPRYELTERSGP 184 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH P FTV V ++ LAPA G SK+ AE+ AA E+LKREG Sbjct: 185 DHRPVFTVQVTVTPLAPAVGEGGSKQVAERAAAEELLKREG 225 >gi|57239534|ref|YP_180670.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden] gi|58579518|ref|YP_197730.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden] gi|81352757|sp|Q5HA74|RNC_EHRRW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|57161613|emb|CAH58541.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden] gi|58418144|emb|CAI27348.1| Ribonuclease III [Ehrlichia ruminantium str. Welgevonden] Length = 227 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 124/220 (56%), Gaps = 2/220 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + K I Y F N LL +ALTH S+ + +YERLEFLGD +L L+IS +LFN F Sbjct: 4 NAISKIIKYDFKNTQLLNEALTHPSVLSKDNNNFNYERLEFLGDAVLNLVISEMLFNIFP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +LV ++A+ ++L FI +S R + ++ + +E+LI Sbjct: 64 YDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIG 123 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGG++ A F+ +WK A +DAKT LQEWA +K P Y + +SGPD Sbjct: 124 AIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPD 183 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H+P FTV V I+ +K+ AEQ AA+ +L + Sbjct: 184 HNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAKIN 223 >gi|15611674|ref|NP_223325.1| ribonuclease III [Helicobacter pylori J99] gi|7531198|sp|Q9ZLH2|RNC_HELPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|4155159|gb|AAD06188.1| RIBONUCLEASE III [Helicobacter pylori J99] Length = 239 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + + D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH F + + I A SK+ AEQ A + L++ Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLK 236 >gi|315221419|ref|ZP_07863340.1| ribonuclease III [Streptococcus anginosus F0211] gi|315189538|gb|EFU23232.1| ribonuclease III [Streptococcus anginosus F0211] Length = 232 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 107/219 (48%), Gaps = 5/219 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L ++ G F + LLE A TH+S ++ ++ ERLEFLGD +L LLIS L+ + Sbjct: 8 LSQQFGIVFQDEKLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLISEYLYKKYP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +++V E+ + +R+ FI++ K +I D+ E+ + Sbjct: 68 KKPEGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AL LD G+E F+ + + + D KT+LQE V Y+VT SGP Sbjct: 128 ALLLDKGVEAVKNFLYQVMIPKVEVGDFEQVIDYKTKLQELLQVNGDVEIVYQVTSESGP 187 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H F V V + G QG SK+ AEQ AA ++ Sbjct: 188 AHAKEFAVAVSVDGRTVGQGQGRSKKLAEQEAAKNAFEK 226 >gi|317177479|dbj|BAJ55268.1| ribonuclease III [Helicobacter pylori F16] Length = 239 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 114/224 (50%), Gaps = 4/224 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ Sbjct: 15 NSSYITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 72 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LS S+VSA +++A+ + L ++RVSS SI + E+L Sbjct: 73 FYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEAL 132 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +A +YL+ G+ + + D KT LQE A+F V P Y++ Sbjct: 133 MAGVYLEAGLAKVRKITQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 192 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 193 KGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 236 >gi|15645286|ref|NP_207456.1| ribonuclease III [Helicobacter pylori 26695] gi|2313785|gb|AAD07725.1| ribonuclease III (rnc) [Helicobacter pylori 26695] Length = 240 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ Sbjct: 16 NSSYTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 73 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LS S+VSA +++A+ + L ++RVSS SI + E+L Sbjct: 74 FYQYDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEAL 133 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +A +YL+ G+ + + + D KT LQE A+F V P Y++ Sbjct: 134 MAGVYLEAGLAKVQKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 193 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH F + + I A SK+ AEQ A + L++ Sbjct: 194 KGPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLK 237 >gi|154505348|ref|ZP_02042086.1| hypothetical protein RUMGNA_02863 [Ruminococcus gnavus ATCC 29149] gi|153794391|gb|EDN76811.1| hypothetical protein RUMGNA_02863 [Ruminococcus gnavus ATCC 29149] Length = 252 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 75/216 (34%), Positives = 111/216 (51%), Gaps = 5/216 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY F + SLLE+A+ HSS ++ ERLEFLGD +L L+ S LF E Sbjct: 35 IGYEFQDFSLLEQAMMHSSYTNEKHLEKYHCNERLEFLGDAVLELVSSEFLFLESPKVSE 94 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ S+V + + ARE++L S++ + S+ +D +E+LI A+YL Sbjct: 95 GKLTKTRASMVCEPSLAFCAREIELGSYLLLGKGEEATGGRQRPSVTSDAMEALIGAIYL 154 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG A F+ ++ L++ K D+KT LQE A Y + GPDH+ Sbjct: 155 DGGFTNAKEFIHRFIL-TDLENKKLFYDSKTILQEIVQADMEEGISYHLIKEEGPDHNKS 213 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 FTV V+I G +K+AAEQ AA + + + Sbjct: 214 FTVEVKIGETVYGTGSGRTKKAAEQEAAYKAILKLK 249 >gi|121533802|ref|ZP_01665629.1| Ribonuclease III [Thermosinus carboxydivorans Nor1] gi|121307793|gb|EAX48708.1| Ribonuclease III [Thermosinus carboxydivorans Nor1] Length = 243 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 107/225 (47%), Gaps = 6/225 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62 L +G +F + LL +AL H+S ++ + E ERLEFLGD +L L+IS L+ + Sbjct: 13 LRDLAASLGISFNDLGLLHQALVHTSYANEVKGGVEHNERLEFLGDAVLELIISEYLYRN 72 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGEL+ LV + +Q A L L ++ + TSI AD E++ Sbjct: 73 FPELPEGELTKARARLVCEPSLAQCASRLGLGKYLLLGKGEAVSGGRERTSILADAFEAV 132 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 I A+YLDGG+ A FV + + + D KT LQE Y+V Sbjct: 133 IGAIYLDGGVSAATNFVLNHLHEDLALIWRGDYVFYDYKTVLQEVVQQAGECKISYEVVA 192 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH+ F V V ++ G +K+ AEQ AA E L++ Sbjct: 193 EYGPDHNKTFEVSVLVNHQHLGAGSGKNKKEAEQNAAKEALQKLK 237 >gi|114564093|ref|YP_751607.1| ribonuclease III [Shewanella frigidimarina NCIMB 400] gi|122299035|sp|Q07YZ6|RNC_SHEFN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|114335386|gb|ABI72768.1| RNAse III [Shewanella frigidimarina NCIMB 400] gi|211926923|dbj|BAG82671.1| ribonuclease III [Shewanella sp. SIB1] Length = 226 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + L + +GY F N LL +ALTH S ++ + ERLEFLGD IL + IS L Sbjct: 1 MEPIKNLPRLCRTLGYEFNNIELLIQALTHRSAAN---KHNERLEFLGDSILSIAISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV +T + +A+E L ++ + K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVKGDTLTIIAKEFKLGDYLYLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD IEV + ++++R +K G ++D KT LQE+ P+Y+V Sbjct: 118 EAIIGAVYLDADIEVCRKLLLSWYQERLAEIKPGINQKDPKTILQEYLQGFKKPLPDYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224 G HD FTV +IS L G+ S+R AEQ+AAA+VL+ Sbjct: 178 VAVEGEAHDQTFTVECKISELDKVVTGVASSRRKAEQLAAAQVLELLN 225 >gi|156975792|ref|YP_001446699.1| ribonuclease III [Vibrio harveyi ATCC BAA-1116] gi|269960405|ref|ZP_06174778.1| Ribonuclease 3 [Vibrio harveyi 1DA3] gi|189043375|sp|A7MZA8|RNC_VIBHB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|156527386|gb|ABU72472.1| hypothetical protein VIBHAR_03536 [Vibrio harveyi ATCC BAA-1116] gi|269834832|gb|EEZ88918.1| Ribonuclease 3 [Vibrio harveyi 1DA3] Length = 225 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LE+++GY F + L+ ALTH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIDKLERKLGYQFKDAGLINLALTHRSA---NSKHNERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE DL ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD IE V ++ R ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDIEAVRGIVLSWYNSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FTV +++G+ P G S+R AEQ AA L++ Sbjct: 177 NIKGEAHNQEFTVECDVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222 >gi|167758292|ref|ZP_02430419.1| hypothetical protein CLOSCI_00630 [Clostridium scindens ATCC 35704] gi|167664189|gb|EDS08319.1| hypothetical protein CLOSCI_00630 [Clostridium scindens ATCC 35704] Length = 235 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 115/226 (50%), Gaps = 5/226 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57 LEK+IGY F + LL+KA+ HSS ++ E ERLEFLGD +L L+ S Sbjct: 5 MNQELKELEKKIGYTFKDLQLLKKAMLHSSYANEKHLPKYECNERLEFLGDAVLELVSSE 64 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + EGEL+ S+V + AREL L ++ + SI +D Sbjct: 65 FLFYEHEKMPEGELTKTRASMVCEPALAFCARELSLGEYLLLGKGEEATGGRKRESITSD 124 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+Y+DGG A F+ ++ + L+ K D+KT LQE A F T Y++ Sbjct: 125 AMEALIGAIYIDGGFASAKEFIHRFIL-QDLEDKKLFFDSKTILQEIVQANFKETISYRL 183 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V+V I G +K+AAEQ AA + + + Sbjct: 184 VREEGPDHDKSFHVMVYIGEEEYGLGKGRTKKAAEQEAAYQSILKL 229 >gi|146321055|ref|YP_001200766.1| dsRNA-specific ribonuclease [Streptococcus suis 98HAH33] gi|253751930|ref|YP_003025071.1| ribonuclease III [Streptococcus suis SC84] gi|253753753|ref|YP_003026894.1| ribonuclease III [Streptococcus suis P1/7] gi|253755369|ref|YP_003028509.1| ribonuclease III [Streptococcus suis BM407] gi|145691861|gb|ABP92366.1| dsRNA-specific ribonuclease [Streptococcus suis 98HAH33] gi|251816219|emb|CAZ51846.1| ribonuclease III [Streptococcus suis SC84] gi|251817833|emb|CAZ55586.1| ribonuclease III [Streptococcus suis BM407] gi|251819999|emb|CAR46159.1| ribonuclease III [Streptococcus suis P1/7] gi|292558506|gb|ADE31507.1| Ribonuclease III [Streptococcus suis GZ1] Length = 228 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 6/229 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L ++ L G F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MKDL-HAKLLADFGIDFSDLNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLMIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EGE+S ++ V E+ + +R F+R+ K +I Sbjct: 60 KYLYQKYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD G + F+ K R + + D KT LQE + Y Sbjct: 120 DAFEAFLGALLLDKGEKTVEEFIHKVMIPRLEKGNFERVTDYKTALQEILQVNGEIAISY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +V SGP HD F V V +G SK+ AEQ AA ++ G Sbjct: 180 QVIAESGPAHDKTFEVEVSADQRVIGRGRGRSKKLAEQAAAKNAVEARG 228 >gi|327461014|gb|EGF07347.1| ribonuclease III [Streptococcus sanguinis SK1057] Length = 232 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L ++ FA+ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MENFK-KALLEQFDLVFADETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+LS + +V E+ + AR+ FI++ K +I Sbjct: 60 EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD G+E +F+ + + + D KT+LQE V Y Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPKVEAGDFERVTDYKTKLQELLQINGDVEITY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +V +GP H F V V I+G QG SK+ AEQ AA ++ Sbjct: 180 QVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEK 226 >gi|84684005|ref|ZP_01011907.1| Ribonuclease III [Maritimibacter alkaliphilus HTCC2654] gi|84667758|gb|EAQ14226.1| Ribonuclease III [Rhodobacterales bacterium HTCC2654] Length = 226 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 125/225 (55%), Gaps = 1/225 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + RIG+ F LL +ALTH SIS + +RLEFLGDR+LGL+++ + Sbjct: 1 MKLSADLKGFANRIGHDFKRPELLIRALTHGSISSDTRPDNQRLEFLGDRVLGLVMAEAM 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 A EG+L+ RFN+LV E C+ VAR+++L + +++ + ++ D + Sbjct: 61 LAADKEASEGQLAPRFNALVRKEACADVARQVELGAVLKLGRSEQMSGGRRKQALLGDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+YLD G E A + + W R + RDAKT LQEWA A+ P Y Sbjct: 121 EAVIAAVYLDAGFEAAREMIVRLWGDRIGAVEEDARDAKTALQEWAQARKMQPPTYVEIA 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 R GPDH P FT+ ++ A+ SKRAAEQ AA +L+R G Sbjct: 181 RDGPDHAPEFTIEAQLENGEAARAKANSKRAAEQDAARALLERLG 225 >gi|210134869|ref|YP_002301308.1| ribonuclease III [Helicobacter pylori P12] gi|226741371|sp|B6JLQ0|RNC_HELP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|210132837|gb|ACJ07828.1| ribonuclease III [Helicobacter pylori P12] Length = 239 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + + D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH F + + I A SK+ AEQ A + L++ Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLK 236 >gi|54297783|ref|YP_124152.1| ribonuclease III [Legionella pneumophila str. Paris] gi|148359410|ref|YP_001250617.1| ribonuclease III [Legionella pneumophila str. Corby] gi|296107456|ref|YP_003619157.1| ribonuclease III [Legionella pneumophila 2300/99 Alcoy] gi|81370372|sp|Q5X446|RNC_LEGPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043325|sp|A5ID21|RNC_LEGPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|53751568|emb|CAH12986.1| hypothetical protein lpp1834 [Legionella pneumophila str. Paris] gi|148281183|gb|ABQ55271.1| ribonuclease III [Legionella pneumophila str. Corby] gi|295649358|gb|ADG25205.1| ribonuclease III [Legionella pneumophila 2300/99 Alcoy] Length = 224 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +R+ Y F N + L++ALTH S ++YER EFLGD IL +I+ LFN Sbjct: 1 MKINLERLCRRLNYHFNNIAYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFN 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+LS + LV E +++ARE+ L ++ + + TSI AD +E+ Sbjct: 58 RFPLHSEGQLSRLRSFLVKGEMLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++AA+YLDGG+ A + + R +DAKT+LQE+ A PEY +T Sbjct: 118 ILAAIYLDGGMTAAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTK 177 Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G +H F V I G+ A G ++R AEQ+AA +L++ Sbjct: 178 IEGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLEQL 222 >gi|15601926|ref|NP_244998.1| ribonuclease III [Pasteurella multocida subsp. multocida str. Pm70] gi|13431826|sp|P57805|RNC_PASMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|12720269|gb|AAK02145.1| Rnc [Pasteurella multocida subsp. multocida str. Pm70] Length = 225 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 112/225 (49%), Gaps = 6/225 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 L+++IGY F +LL++ALTH S + + ERLEFLGD IL +I+ L++ Sbjct: 1 MTQNLERLQRQIGYQFNQPALLKQALTHRSAA---VKHNERLEFLGDAILNFIIAEALYH 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EGELS +LV T + +AR+ +L ++ + K SI AD VE+ Sbjct: 58 QFPKCNEGELSRMRATLVREPTLASLARQFELGDYLSLGPGELKSGGFRRESILADCVEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A+ LD + V +++ + ++ G ++D KT LQE+ K P Y V Sbjct: 118 IIGAISLDSDLATTTKIVQHWYQAQLKQIQPGDNQKDPKTRLQEYLQGKRLPLPTYNVVE 177 Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H FTV + + G S+R AEQ AA ++L+ Sbjct: 178 IKGEAHCQTFTVECYVKNIDRTFMGSGASRRKAEQAAAEKILQLL 222 >gi|290580116|ref|YP_003484508.1| putative ribonuclease III [Streptococcus mutans NN2025] gi|254997015|dbj|BAH87616.1| putative ribonuclease III [Streptococcus mutans NN2025] Length = 231 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 9/226 (3%) Query: 7 STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 TLEK++ F+++ LLE A TH+S ++ ++ ERLEFLGD +L L IS Sbjct: 2 KTLEKKLAEDFKIVFSDKELLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLTISRY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF+ + EG+LS + +V E+ + +R +I++ K +I D+ Sbjct: 62 LFDKYPQKAEGDLSKMRSMIVREESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDL 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD G++ F+++ + + + D KT LQE V +Y+V Sbjct: 122 FEAFLGALLLDAGLKAVEAFLNQVVIPKVENNNYERVTDYKTALQELLQVDGDVLIDYEV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V V ++ + G SK+ AEQ AA L++ Sbjct: 182 LKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEKL 227 >gi|322411350|gb|EFY02258.1| ribonuclease III [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 230 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 9/226 (3%) Query: 7 STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 LE+ + F +++LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 2 KKLEELLAASFDICFEDQTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + EG++S + +V E+ + +R ++I++ K +I D+ Sbjct: 62 LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDL 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD G++ F+ + K + + +D KT LQE +K + +Y+V Sbjct: 122 FEAFLGALLLDKGVDEVRRFLKLVMIPQVEKGNFEKVKDYKTCLQELLQSKGDIAIDYQV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V V ++ ++G+ SK+ AEQ AA L + Sbjct: 182 ISEKGPAHAKQFEVAVFVNEEVLSKGLGKSKKMAEQDAAKNALVQL 227 >gi|116333590|ref|YP_795117.1| dsRNA-specific ribonuclease [Lactobacillus brevis ATCC 367] gi|116098937|gb|ABJ64086.1| dsRNA-specific ribonuclease [Lactobacillus brevis ATCC 367] Length = 229 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 5/223 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 L+ R F ++SLL++A T +S + + + YER+EFLGD ++ L++S +F Sbjct: 7 QELKDRFDIHFKDQSLLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVMQLVVSNYIFRR 66 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + + +G L+ ++V+ ++ + ARE +IR+ K S+ D+ ES Sbjct: 67 YPAMPQGRLTRLRAAMVNEQSFASFARECHFDQYIRLGRGEEKAQARQRDSLLCDIFESF 126 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 I ALY+D G++ FV + D KTELQE V +Y++ Sbjct: 127 IGALYMDQGLDKVVEFVTTVVFPKLDEGRFDEFFDHKTELQELVQKNGPVDIDYRLLDEE 186 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPD+D F V V + +G SK+ AEQ AA L+ Sbjct: 187 GPDNDRAFKVAVYVDDKLLGEGHGHSKKHAEQNAARHALENLK 229 >gi|59712694|ref|YP_205470.1| ribonuclease III [Vibrio fischeri ES114] gi|197335272|ref|YP_002156886.1| ribonuclease III [Vibrio fischeri MJ11] gi|75431522|sp|Q5E314|RNC_VIBF1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|59480795|gb|AAW86582.1| RNase III [Vibrio fischeri ES114] gi|197316762|gb|ACH66209.1| ribonuclease III [Vibrio fischeri MJ11] Length = 223 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 111/227 (48%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LEK+IGY F + S L+ ALTH S ERLEFLGD IL +++ L+ Sbjct: 1 MNS-SLQRLEKKIGYQFKDESFLKLALTHRSA---NGTHNERLEFLGDSILSFVVADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE L ++ + K SI AD VE Sbjct: 57 HRFPKVDEGDMSRMRATLVRGHTLAELGREFQLGDYLYLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD E + ++ R ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDTETVRGIILSWYNTRLESIEPGVSQKDPKTRLQEYLQGRRKPLPTYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224 G H+ FT+ ++GL P G S+R AEQ AA L + Sbjct: 177 KIKGEAHNQEFTIECIVAGLDKPVIGKGSSRRKAEQSAADIALGQLN 223 >gi|90407379|ref|ZP_01215564.1| ribonuclease III [Psychromonas sp. CNPT3] gi|90311530|gb|EAS39630.1| ribonuclease III [Psychromonas sp. CNPT3] Length = 231 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 113/225 (50%), Gaps = 5/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LE+RIGY F N +LL++ALTH S ERLEFLGD IL +IST L+ Sbjct: 5 MKETELKRLERRIGYKFNNFALLKQALTHRSA---LGAHNERLEFLGDSILSFVISTDLY 61 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+LS +LV + +++ RE +L + + K SI AD VE Sbjct: 62 LRFPKVNEGDLSRMRATLVCGKMLAEIGREFELGDSLILGPGELKSGGFRRDSIIADGVE 121 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178 S+I A++LD I V ++ R ++D KT LQE ++ P Y+V Sbjct: 122 SIIGAVFLDSDINSVDRLVLAWFNSRLTTIEPGIGQKDPKTRLQEHLQSRKQGLPLYEVL 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ RFT+ I G+ QG S+R AEQ+AA ++L Sbjct: 182 EIRGEAHNQRFTMSCIIDGIEAVQGQGTSRRKAEQIAAEKMLVAL 226 >gi|147669550|ref|YP_001214368.1| ribonuclease III [Dehalococcoides sp. BAV1] gi|289432809|ref|YP_003462682.1| ribonuclease III [Dehalococcoides sp. GT] gi|146270498|gb|ABQ17490.1| RNAse III [Dehalococcoides sp. BAV1] gi|288946529|gb|ADC74226.1| ribonuclease III [Dehalococcoides sp. GT] Length = 248 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLL 59 L + LE +G F SLLE+AL H+S + ER+EFLGD +LG++ + L Sbjct: 13 LDLTELENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRL 72 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F +EG+L+ + LV E+ +VA ++L ++ + F + A Sbjct: 73 YHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDVSKGRFKPANLAGAF 132 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177 E+++AA+Y+D G++V + + +K + D K+ LQE A+ +TP Y++ Sbjct: 133 EAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQELIQAQLQLTPRYRI 192 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 T SGP+H+ F V A+G SK+ AE AA L++ Sbjct: 193 TNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAAKVALQQ 237 >gi|160880576|ref|YP_001559544.1| ribonuclease III [Clostridium phytofermentans ISDg] gi|160429242|gb|ABX42805.1| Ribonuclease III [Clostridium phytofermentans ISDg] Length = 235 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + E++I YAF LL +ALTHSS ++ + + ERLEFLGD +L L S LF Sbjct: 10 LAEFEQKIDYAFTEPGLLRQALTHSSFANEKRLSKLANNERLEFLGDAVLELTTSEWLFE 69 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG+L+ S+V +T + AREL L +++ + SI +D +ES Sbjct: 70 KHPKMPEGDLTKLRASMVCEQTLALCARELHLGNYVFLGKGEDTTGGRDRDSILSDALES 129 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +I A+YLDGG A F+ Y K D+KT LQE +++ Y++ + Sbjct: 130 IIGAIYLDGGFANAKEFISNYILSDIEHK-KLFYDSKTILQEIVQSEYKKHLSYELLQET 188 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH+ +FTVV ++ + G +K+AAEQ AA + + Sbjct: 189 GPDHNKKFTVVAKMDEESLEIGTGRTKKAAEQEAAYRSILQL 230 >gi|73748788|ref|YP_308027.1| ribonuclease III [Dehalococcoides sp. CBDB1] gi|90101624|sp|Q3ZXY9|RNC_DEHSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|73660504|emb|CAI83111.1| ribonuclease III [Dehalococcoides sp. CBDB1] Length = 237 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 6/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLL 59 L + LE +G F SLLE+AL H+S + ER+EFLGD +LG++ + L Sbjct: 2 LDLTELENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRL 61 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F +EG+L+ + LV E+ +VA ++L ++ + F + A Sbjct: 62 YHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDVSKGRFKPANLAGAF 121 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177 E+++AA+Y+D G++V + + +K + D K+ LQE A+ +TP Y++ Sbjct: 122 EAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQELIQAQLQLTPRYRI 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 T SGP+H+ F V A+G SK+ AE AA L++ Sbjct: 182 TNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAAKVALQQ 226 >gi|317050765|ref|YP_004111881.1| ribonuclease III [Desulfurispirillum indicum S5] gi|316945849|gb|ADU65325.1| ribonuclease III [Desulfurispirillum indicum S5] Length = 247 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 121/225 (53%), Gaps = 6/225 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61 R + LE+R+GY F + LL ALTH S HS + E+ ERLEFLGD +LGL+IS L Sbjct: 10 RIAPLEERLGYVFMRKELLHTALTHRSFFHSNRKSAENNERLEFLGDSVLGLIISHYLLE 69 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + EG+LS + +V+ +T S+VARE + L ++ + SI AD +E Sbjct: 70 SFPAQSEGKLSKIRSFIVNEKTLSRVAREKIQLGRYLFIGKGEENTGGRNKASILADAME 129 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++AA+YLDGG+ A + + + RD KTELQE + + PEY+V Sbjct: 130 AVVAAIYLDGGLNAARNIILELMSEEIESTVFSNRHRDYKTELQELSQGSLSLAPEYRVE 189 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH F V + + G SK++AEQ AA +++ Sbjct: 190 REWGPDHQKHFAVSLYLHDQVYGHGEGTSKKSAEQKAARAAMEKL 234 >gi|91227852|ref|ZP_01262025.1| ribonuclease III [Vibrio alginolyticus 12G01] gi|269965785|ref|ZP_06179882.1| Ribonuclease 3 [Vibrio alginolyticus 40B] gi|91188362|gb|EAS74658.1| ribonuclease III [Vibrio alginolyticus 12G01] gi|269829653|gb|EEZ83890.1| Ribonuclease 3 [Vibrio alginolyticus 40B] Length = 225 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 118/226 (52%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LE+++GY F + L+ ALTH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIDKLERKLGYQFQDAGLINLALTHRSA---NSKHNERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE DL ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD +EV V +++ R ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDLEVVRGIVLSWYQSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222 >gi|251781986|ref|YP_002996288.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390615|dbj|BAH81074.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 230 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 9/226 (3%) Query: 7 STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 LE+ + F + +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 2 KKLEELLAASFDICFEDHTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + EG++S + +V E+ + +R ++I++ K +I D+ Sbjct: 62 LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDL 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD G++ F+ + + K + + +D KT LQE +K + +Y+V Sbjct: 122 FEAFLGALLLDKGVDEVRRFLQQVMIPQVEKGNFEKVKDYKTCLQELLQSKGDIAIDYQV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V V ++ ++G+ SK+ AEQ AA L + Sbjct: 182 ISEKGPAHAKQFEVAVFVNEEVLSKGLGKSKKMAEQDAAKNALVQL 227 >gi|110633304|ref|YP_673512.1| ribonuclease III [Mesorhizobium sp. BNC1] gi|110284288|gb|ABG62347.1| RNAse III [Chelativorans sp. BNC1] Length = 238 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 106/221 (47%), Positives = 143/221 (64%), Gaps = 1/221 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +RIG +F + LLE+ALTHSS + Y+RLEFLGDR+LGL ++ +L+ + A Sbjct: 13 EAVNERIGLSFRDAELLERALTHSS-ARGKGGDYQRLEFLGDRVLGLAVAEMLYEAYPDA 71 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS+R NSLV+AET +++ EL L + IR SDL+ +++ADV+E+LIA + Sbjct: 72 SEGELSLRLNSLVNAETLAEITEELGLDTLIRTGSDLKALAMRKQVNLRADVLEALIAVI 131 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YL G++ A F+ +W +R+ G R DAKT LQEWAH TP+Y + R GPDHD Sbjct: 132 YLQDGLDGARQFIRTHWTERSTAEGAARADAKTALQEWAHRVSSATPDYVIESREGPDHD 191 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 P FT VV I+G +G SKR AEQ AA EVL RE +WT Sbjct: 192 PVFTAVVRIAGFQEGRGRGRSKREAEQAAATEVLIREAVWT 232 >gi|308184450|ref|YP_003928583.1| ribonuclease III [Helicobacter pylori SJM180] gi|308060370|gb|ADO02266.1| ribonuclease III [Helicobacter pylori SJM180] Length = 239 Score = 145 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++ VSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAISLQDYLHVSSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + K + + D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH F + + I A SK+ AEQ A + L++ Sbjct: 196 DHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 236 >gi|240949696|ref|ZP_04754031.1| ribonuclease III [Actinobacillus minor NM305] gi|240295954|gb|EER46630.1| ribonuclease III [Actinobacillus minor NM305] Length = 223 Score = 145 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 6/223 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY F L +ALTH S + ++ ERLEFLGD IL I L++ F Sbjct: 1 MQLERLQKKLGYQFETLDYLTQALTHRSAA---SKNNERLEFLGDSILNFTIGKALYDKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ +L ++++ + K SI +D VE++I Sbjct: 58 PKADEGELSRMRAALVREQTLAVIARQFELGEYLKLGAGELKSGGFRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G+E A + +++ + G+ ++D KT LQE+ + PEY+V Sbjct: 118 AAIYLDKGMEPAMERIYAWYETFLAEITPGEAQKDPKTRLQEFLQGRKLPLPEYEVIDIK 177 Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V ++ G G S+R AEQ A +VL + Sbjct: 178 GEAHNQTFKVTCKVQGIEEIFTGQGTSRRKAEQNVAEKVLTQI 220 >gi|254474637|ref|ZP_05088023.1| ribonuclease III [Ruegeria sp. R11] gi|214028880|gb|EEB69715.1| ribonuclease III [Ruegeria sp. R11] Length = 222 Score = 145 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 87/216 (40%), Positives = 126/216 (58%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 E RIGY F +LL +ALTH+S+S ++ +RLEFLGDR+LGL+++T L A Sbjct: 3 AFEARIGYQFTEPALLVRALTHASVSSPNRKDNQRLEFLGDRVLGLVMATALLETDKDAS 62 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+L+ RFN+LV ETC+ VAR++D+ S +++ ++ D +E++IAA+Y Sbjct: 63 EGQLAPRFNALVRKETCADVARQIDVGSVLKLGRSETLSGGRRKMALLGDAMEAVIAAVY 122 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 DGG + A + + W R + RDAKT LQE+A A+ P Y + R GPDH P Sbjct: 123 KDGGFDAAQELILRLWGDRIGRVEADARDAKTTLQEFAQARGEQPPTYVLVERKGPDHQP 182 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 FT+ V++ + SKR AEQ AA +L R Sbjct: 183 EFTISVQLQDGTEGRATAGSKRQAEQAAAKSLLARL 218 >gi|170744647|ref|YP_001773302.1| ribonuclease III [Methylobacterium sp. 4-46] gi|168198921|gb|ACA20868.1| Ribonuclease III [Methylobacterium sp. 4-46] Length = 244 Score = 145 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 130/222 (58%), Gaps = 1/222 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S LE RIG+AF ++ LL +ALTH S +ESY+RLEFLGDR+LGL ++ L Sbjct: 15 DLSALEGRIGHAFDDKDLLARALTHVSAGAG-EESYQRLEFLGDRVLGLAVAEGLLRALP 73 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG+LS R + LV E+C+ VA+ ++ +R+ + +I ADV E+++ Sbjct: 74 GADEGDLSRRLSGLVRRESCAAVAQAWEVGPHLRLGAGEVHGGGRRNPAILADVCEAILG 133 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A++LD G A +D+ + G RD K+ LQEWA TP Y V R+GPD Sbjct: 134 AIFLDAGYAAAKAVIDRAFAAAEEAEGPRGRDPKSALQEWAQGLGLPTPTYAVVERAGPD 193 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 H P F + ++G+AP+ G+ SKR AEQ AA +L+REG+W Sbjct: 194 HAPIFRIEARVAGVAPSLGVGGSKRLAEQEAARLLLRREGVW 235 >gi|119471905|ref|ZP_01614213.1| RNase III, ds RNA [Alteromonadales bacterium TW-7] gi|119445278|gb|EAW26568.1| RNase III, ds RNA [Alteromonadales bacterium TW-7] Length = 225 Score = 145 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 112/223 (50%), Gaps = 6/223 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + L +IGY F+++ LLE+A+TH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MKK-NVTELYNKIGYEFSDQGLLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANALY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+EG+LS ++LV +T ++ E L ++R+ K S AD VE Sbjct: 57 AKFPKAREGDLSRMRSTLVRGQTLAEFGVEFGLGDYLRLGPGELKSGGFRRESTLADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A +LD GIE + +++ R ++D KT LQE + P Y V Sbjct: 117 AIIGAAFLDSGIERCSELILSWYESRLDAISPGLNQKDPKTLLQEHLQGRKLPLPGYTVV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 G H+ FTV + G+ + S+R AEQ AA + LK Sbjct: 177 DTKGQAHNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALK 219 >gi|254230524|ref|ZP_04923895.1| ribonuclease III [Vibrio sp. Ex25] gi|262393270|ref|YP_003285124.1| ribonuclease III [Vibrio sp. Ex25] gi|151936949|gb|EDN55836.1| ribonuclease III [Vibrio sp. Ex25] gi|262336864|gb|ACY50659.1| ribonuclease III [Vibrio sp. Ex25] Length = 225 Score = 145 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LE+++GY F + L+ ALTH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIDKLERKLGYQFQDAGLINLALTHRSA---NSKHNERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE DL ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD +EV V ++ R ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDLEVVRGIVLSWYNSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222 >gi|39997326|ref|NP_953277.1| ribonuclease III [Geobacter sulfurreducens PCA] gi|81701827|sp|Q74AX1|RNC_GEOSL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|39984217|gb|AAR35604.1| ribonuclease III [Geobacter sulfurreducens PCA] gi|298506263|gb|ADI84986.1| ribonuclease III [Geobacter sulfurreducens KN400] Length = 248 Score = 145 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 6/221 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 LE IGY F +R L++ALTH S + + ERLEF GD ILG I +L H+ Sbjct: 19 LETSIGYRFTDRRFLDEALTHRSWLNEVRSPTVPDNERLEFFGDAILGFCIGKMLLRHYP 78 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 ++EG L+ ++LV ET + +A ++L S++R+ + S+ A+ +E+L+A Sbjct: 79 ESREGALARMKSALVGEETLADLAAAVELGSYLRLGRGEERSGGRHRRSLLANALEALLA 138 Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGG+ VD ++ R + +G RD KT+ QE A A++G P Y + SG Sbjct: 139 AMYLDGGMAPVERLVDAWFGPRLAGVAAGIKGRDFKTDFQELAQAQYGGLPRYVLVDTSG 198 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P HD RFTV + QG SK+ AEQ AA + L+R Sbjct: 199 PAHDLRFTVAAYVGERLLGQGTGRSKKEAEQAAARQCLERL 239 >gi|24379904|ref|NP_721859.1| ribonuclease III [Streptococcus mutans UA159] gi|81451148|sp|Q8DT66|RNC_STRMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|24377882|gb|AAN59165.1|AE014983_6 putative ribonuclease III [Streptococcus mutans UA159] Length = 231 Score = 145 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 9/226 (3%) Query: 7 STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 TLEK++ F+++ LLE A TH+S ++ ++ ERLEFLGD +L L IS Sbjct: 2 KTLEKKLAEDFKIVFSDKELLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLTISHY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF+ + EG+LS + +V E+ + +R +I++ K +I D+ Sbjct: 62 LFDKYPQKAEGDLSKMRSMIVREESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDL 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD G++ F+++ + + + D KT LQE V +Y+V Sbjct: 122 FEAFLGALLLDAGLKAVEAFLNQVVIPKVENNNYERVTDYKTALQELLQVDGDVLIDYEV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V V ++ + G SK+ AEQ AA L++ Sbjct: 182 LKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEKL 227 >gi|332532635|ref|ZP_08408511.1| ribonuclease III [Pseudoalteromonas haloplanktis ANT/505] gi|332037851|gb|EGI74300.1| ribonuclease III [Pseudoalteromonas haloplanktis ANT/505] Length = 225 Score = 145 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 116/226 (51%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + L K+IGY FA++ LLE+A+TH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MKK-NVTELYKKIGYEFADQGLLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANALY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+EG+LS ++LV +T ++ E L ++R+ K S AD VE Sbjct: 57 AKFPKAREGDLSRMRSTLVRGQTLAEFGLEFGLGDYLRLGPGELKSGGFRRESTLADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A +LD GI+ G + +++ R ++D KT LQE+ A+ P Y V Sbjct: 117 AIIGAAFLDSGIDSCGDLILSWYESRLDAISPGLNQKDPKTLLQEYLQARKLSLPGYTVV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G H+ FTV + G+ + S+R AEQ AA + LK Sbjct: 177 DTKGQAHNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALKILK 222 >gi|317012480|gb|ADU83088.1| ribonuclease III [Helicobacter pylori Lithuania75] Length = 239 Score = 145 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++R+SS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRISSSEEISNGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + + D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH F + + I A SK+ AEQ A + L++ Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLK 236 >gi|316934144|ref|YP_004109126.1| ribonuclease III [Rhodopseudomonas palustris DX-1] gi|315601858|gb|ADU44393.1| ribonuclease III [Rhodopseudomonas palustris DX-1] Length = 272 Score = 145 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 105/219 (47%), Positives = 141/219 (64%), Gaps = 2/219 (0%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+RIG++FA+ SLL ALTH S S +SY+RLEFLGD +LGL++S +L+ F A Sbjct: 47 IEQRIGHSFADPSLLTTALTHVSALKSARRTDSYQRLEFLGDHVLGLIVSDMLYRAFPDA 106 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS R LV E+C+ VAR LDL+ I++ + S+ D+ E++I A+ Sbjct: 107 DEGELSKRLADLVRKESCADVARHLDLSEGIKIGTVGAGAGAKLRKSVLGDICEAVIGAV 166 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG E A FV W +R K + RD KT LQEWA A+ TP Y+ R+GP HD Sbjct: 167 YLDGGYEAASNFVRSNWTERMHKPVRSLRDPKTVLQEWAQARGLPTPVYREVERTGPHHD 226 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P+F V V + GL PA+G+ SKRAAE+VAA+ +L REG+ Sbjct: 227 PQFRVAVVLPGLEPAEGVGGSKRAAEKVAASAMLAREGV 265 >gi|207092393|ref|ZP_03240180.1| ribonuclease III [Helicobacter pylori HPKX_438_AG0C1] Length = 239 Score = 145 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA+ +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + + D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQAQFCVIPTYQLLKEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH F + + I A SK+ AEQ A L++ Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQKLK 236 >gi|317014083|gb|ADU81519.1| ribonuclease III [Helicobacter pylori Gambia94/24] Length = 239 Score = 145 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++R+SS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRISSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + K + + D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH F + + I A SK+ AEQ A + L++ Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLK 236 >gi|88858204|ref|ZP_01132846.1| RNase III, dsRNA [Pseudoalteromonas tunicata D2] gi|88819821|gb|EAR29634.1| RNase III, dsRNA [Pseudoalteromonas tunicata D2] Length = 225 Score = 145 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 6/223 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + L +IGY F N +LLE+A+TH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNK-NVTDLYTKIGYTFNNVALLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANELY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F ++EG+LS ++LV +T ++ E +L ++R+ K S AD VE Sbjct: 57 KRFPKSREGDLSRMRSTLVRGQTLAEFGLEFNLGDYLRLGPGELKSGGYRRESTLADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++LD GI+ + ++ + G ++D KT LQE+ A+ P Y V Sbjct: 117 AIIGAVFLDSGIDTCSNLILSWYKFRLDEISPGLNQKDPKTLLQEYLQARKLPLPNYTVI 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 G H+ FTV + G+ + S+R AEQ AA + LK Sbjct: 177 DTKGQAHNQSFTVECVVEGMNSIVSVGSSRRKAEQKAAEKALK 219 >gi|257464706|ref|ZP_05629077.1| ribonuclease III [Actinobacillus minor 202] gi|257450366|gb|EEV24409.1| ribonuclease III [Actinobacillus minor 202] Length = 223 Score = 145 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++GY F L +ALTH S + ++ ERLEFLGD IL I L++ F Sbjct: 1 MQLERLQKKLGYQFETLDYLTQALTHRSAA---SKNNERLEFLGDSILNFTIGKALYDKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ +L ++++ + K SI +D VE++I Sbjct: 58 PKADEGELSRMRAALVREQTLAVIARQFELGEYLKLGAGELKSGGFRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G+E A + +++ + G+ ++D KT LQE+ + PEY+V Sbjct: 118 AAIYLDKGMEPAMERIYAWYETFLAEITPGEAQKDPKTRLQEFLQGRKLPLPEYEVIDIK 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ F V ++ G+ G S+R AEQ A +VL + Sbjct: 178 GEAHNQTFKVTCKVQGIDEIFTGQGTSRRKAEQNVAEKVLTQI 220 >gi|315127397|ref|YP_004069400.1| RNase III, ds RNA [Pseudoalteromonas sp. SM9913] gi|315015911|gb|ADT69249.1| RNase III, ds RNA [Pseudoalteromonas sp. SM9913] Length = 225 Score = 145 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + L KRIGY FA++ LLE+A+TH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MKK-NVTELYKRIGYTFADQGLLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANALY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+EG+LS ++LV +T ++ E +L ++R+ K S AD VE Sbjct: 57 AKFPKAREGDLSRMRSTLVRGQTLAEFGLEFELGDYLRLGPGELKSGGFRRESTLADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++LD I+ G + +++ R ++D KT LQE+ A+ P Y V Sbjct: 117 AIIGAVFLDSDIDRCGELILAWYESRLDAISPGLNQKDPKTLLQEYLQARKLSLPGYTVV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G H+ FTV + G+ + S+R AEQ AA + LK Sbjct: 177 DTKGQAHNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALKILK 222 >gi|116748321|ref|YP_845008.1| ribonuclease III [Syntrophobacter fumaroxidans MPOB] gi|189043370|sp|A0LGM1|RNC_SYNFM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116697385|gb|ABK16573.1| RNAse III [Syntrophobacter fumaroxidans MPOB] Length = 242 Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 11/232 (4%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLI 55 M L+ +GY F + LL +AL H S H ++ E LEFLGD +LGL I Sbjct: 1 MKPSDGLEALQNLLGYRFGDEGLLHRALVHRSYLHENPHLDEKDNETLEFLGDAVLGLAI 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L F EGELS +++V+ +++A EL+L ++ + S+ Sbjct: 61 SHFLLEQFPDYNEGELSRLRSAIVNERELTRIAVELNLGEYLLLGKGEEMTGGRRKASLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKF 169 AD +E+L+A++YLDGG++ + K + + +D KT+LQE A++ Sbjct: 121 ADSLEALLASIYLDGGLDAVLGVIKKLFDVYLRFEKREHVLKALDKDYKTQLQELTQARY 180 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +TP Y + GPDHD F + V + G A G SK+ A+Q AA + L+ Sbjct: 181 KLTPVYVLDREEGPDHDKTFHMNVVLEGQVLAGGSGKSKKDAQQAAAEKALQ 232 >gi|116515099|ref|YP_802728.1| hypothetical protein BCc_163 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285505|sp|Q057R4|RNC_BUCCC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116256953|gb|ABJ90635.1| ribonuclease III [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 226 Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 119/228 (52%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + L+K IGY F N +LL+ ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVMKKLQKFIGYTFTNITLLKHALTHRSASS---QHNERLEFLGDSILSFIIAKALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +HF EG +S +LV T +++A E L ++++ +K SI A+ +E Sbjct: 58 HHFPKMNEGGMSRMRATLVRGNTLAEIATEFSLGKYLQLGQGEKKSGGFKRESILANAIE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IA+++LD I + ++K R K ++D KT LQE+ +K P Y + Sbjct: 118 AIIASIFLDSNIYTVERIILYWYKNRFKKMNPTGTKKDPKTRLQEYLQSKHFSLPIYSIG 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H+ FT+ +I GL G+ S+R AEQ AA L R + Sbjct: 178 QIYGEAHNQIFTIYCKIDGLSELLIGIGASRRKAEQDAAQNALIRLEV 225 >gi|290968970|ref|ZP_06560505.1| ribonuclease III [Megasphaera genomosp. type_1 str. 28L] gi|290780926|gb|EFD93519.1| ribonuclease III [Megasphaera genomosp. type_1 str. 28L] Length = 236 Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 111/233 (47%), Gaps = 10/233 (4%) Query: 1 MSALRYSTLEKRIGY----AFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILG 52 M R LE+ + F N LL++ALTHSS ++ ++ ERLEFLGD IL Sbjct: 1 MDNTRKKQLEEFLRTVGLPPFQNLLLLDQALTHSSYANEHKIRHGYFNERLEFLGDAILD 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L++ LF + +EGELS S+VS + V + ++ + Sbjct: 61 LVVGEYLFLQYPQMQEGELSKARASIVSEAPLAAVCSAFHMGKYLLLGHGEISSGGRERP 120 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFG 170 I AD E+++ A+Y+D E A F+ ++ + +++G + +D KT QE+ Sbjct: 121 GILADAFEAVVGAVYMDASYEEARKFILRHLRDYLALVENGHYDQDYKTLFQEYIQRDGE 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y + SGPDHD FT+ V G +G SK+ AEQ AA + L R Sbjct: 181 HHITYSLCKESGPDHDKTFTMQVAADGKVLGEGCGKSKKMAEQHAARQALLRL 233 >gi|260892849|ref|YP_003238946.1| ribonuclease III [Ammonifex degensii KC4] gi|260864990|gb|ACX52096.1| ribonuclease III [Ammonifex degensii KC4] Length = 235 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 110/224 (49%), Gaps = 4/224 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + + L+ ++G ++ LL ALTH S ++ + E +RLEFLGD +L L++S L+ Sbjct: 1 MGLAKLKDKLGISWKEEKLLRLALTHPSYAYEHPGVEHNQRLEFLGDSVLSLVVSDYLYR 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EGEL+ ++V + ++VA EL + + + K S+ AD E+ Sbjct: 61 TFPEKSEGELTRLRAAVVCEASLARVAEELGIGEALLLGRGEEKSGGRKRPSLLADAFEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A+YLD G+EVA F + G+ RD KTELQE Y+V Sbjct: 121 LLGAIYLDQGLEVASAFALHLLRPVLQDVLEGRVERDYKTELQELLQKGSPEKIVYEVLQ 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH RF V V G +G SK+ AEQ AA E + Sbjct: 181 EEGPDHAKRFLVGVYYQGKCLGRGEGRSKKEAEQRAAREAWLKL 224 >gi|254779351|ref|YP_003057456.1| ribonuclease III [Helicobacter pylori B38] gi|254001262|emb|CAX29239.1| Ribonuclease III (RNase III) [Helicobacter pylori B38] Length = 232 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 119/231 (51%), Gaps = 9/231 (3%) Query: 1 MSALR-----YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55 M R Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I Sbjct: 1 MKNKRSQNSPYTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVI 58 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 LL++ F EG+LS S+VSA +++A+ + L ++RVSS SI Sbjct: 59 GELLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSIL 118 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTP 173 + E+L+A +YL+ G+ + + + D KT LQE A+F V P Sbjct: 119 SSAFEALMAGVYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIP 178 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y++ GPDH F + + I A SK+ AEQ A +VL++ Sbjct: 179 TYQLLQEKGPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQVLQKLK 229 >gi|116511619|ref|YP_808835.1| ribonuclease III [Lactococcus lactis subsp. cremoris SK11] gi|122940253|sp|Q030F9|RNC_LACLS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116107273|gb|ABJ72413.1| RNAse III [Lactococcus lactis subsp. cremoris SK11] Length = 231 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 102/226 (45%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ L+ G F + LL+ A THSS ++ + + ERLEFLGD L L+IS Sbjct: 1 MLKLQ-EKLKNDYGLVFNDEDLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EGELS +S+V E+ + +R F+R+ K + Sbjct: 60 DYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLE 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 ++ E+ + AL++D G++ F+ D KTELQE T Y Sbjct: 120 NLFEAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVIDYKTELQEVLQVGGETTITY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + GP HD F V +G +G+ SK+ AEQ AA +K Sbjct: 180 NILKEEGPAHDRSFVAAVYNNGKELGRGLGKSKKVAEQKAAENAIK 225 >gi|91794117|ref|YP_563768.1| ribonuclease III [Shewanella denitrificans OS217] gi|123165871|sp|Q12KI1|RNC_SHEDO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|91716119|gb|ABE56045.1| RNAse III [Shewanella denitrificans OS217] Length = 226 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + + L + +GY F N+ LL +ALTH S ++ + ERLEFLGD IL ++IS L Sbjct: 1 MEPVKNLARLSRTLGYEFTNQELLVQALTHRSAAN---KHNERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV ET + +A+E L ++ + K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVKGETLTLIAKEFKLGDYLFLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD ++ T + +K G ++D KT LQE+ P+Y+V Sbjct: 118 EAIIGAVYLDANMQACETLLLSWYKVRLDEIKPGINQKDPKTILQEYLQGYKKPLPDYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224 G HD FTV I L G+ S+R AEQ+AAA++L+ Sbjct: 178 VQVDGEAHDQTFTVECRIQDLDEVVTGVGSSRRKAEQLAAAQILELIN 225 >gi|15892080|ref|NP_359794.1| ribonuclease III [Rickettsia conorii str. Malish 7] gi|22654066|sp|Q92JB0|RNC_RICCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|15619202|gb|AAL02695.1| ribonuclease III [Rickettsia conorii str. Malish 7] Length = 227 Score = 144 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 115/228 (50%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + + LEK + Y+F N+ LL +AL+H S+ ++ + YERLEFLGD +L L+I+ Sbjct: 1 MES--FEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVIT 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +LF +F + EG L+ + LV ET V +L L ++I ++ + Sbjct: 59 EILFRNFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYIIMTHGEEVAGGRDNLNNIE 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + E+LIAA+YLD IE ++ W + D KT LQEWA A P Y+ Sbjct: 119 NATEALIAAIYLDSNIETTHDIIENLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYR 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + R G H FTV+V++ G + + AE+ AA +L R Sbjct: 179 LIKREGASHSSTFTVLVKVKDYEQ-TGTGHTIKEAEKNAARSLLHRLK 225 >gi|328955642|ref|YP_004372975.1| RNAse III [Coriobacterium glomerans PW2] gi|328455966|gb|AEB07160.1| RNAse III [Coriobacterium glomerans PW2] Length = 241 Score = 144 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 115/225 (51%), Gaps = 3/225 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 + + E+ + FA+R LL ALTH S SYERLEFLGD ILG +++ LF Sbjct: 4 SEKLRAAEQICHHRFADRQLLRCALTHPSAVEGQPVCASYERLEFLGDSILGAIVAVALF 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + S EG L+ SLVS S V EL + I + M S +V E Sbjct: 64 NSYPSIDEGRLTRLKVSLVSGAMLSDVGLELGIDRCIIFGASETGTGARGMHSALENVYE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 SL+AA+YLDGG +VA F+ + + A + + K+ LQE G P YK+ Sbjct: 124 SLVAAMYLDGGWDVAEAFILRTLEPHLADDRPESVSNPKSILQERVQEDHGEPPCYKLVG 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H+P FT VV + G+ +G SK+ AE AA + L+R G Sbjct: 184 MSGPAHEPTFTAVVLVDGVRCGRGTGSSKKEAEASAARDALERMG 228 >gi|32266198|ref|NP_860230.1| ribonuclease III [Helicobacter hepaticus ATCC 51449] gi|81666107|sp|Q7VIA9|RNC_HELHP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|32262248|gb|AAP77296.1| ribonuclease III [Helicobacter hepaticus ATCC 51449] Length = 240 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 74/217 (34%), Positives = 112/217 (51%), Gaps = 4/217 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK++GY F N+ LL +ALTH S Y + ERLEFLGD +L LL+ LF F AKE Sbjct: 13 LEKKLGYVFQNQQLLLEALTHKSCKKQY--NNERLEFLGDAVLDLLVGEYLFKKFPLAKE 70 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS +V+ + ++A+ LDL +++ +S + SI ++ E+LI A+YL Sbjct: 71 GELSKLRACIVNEKGFMKLAQSLDLGAYLYISQSEENNNGRQKASILSNAFEALIGAIYL 130 Query: 129 DGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + + + + + + D KT LQE A +G P Y + SGPDH Sbjct: 131 ESSLTYVQSIIYDLLEYNYIKIDLDSLFMDYKTALQEITQAFYGEIPTYTLISESGPDHK 190 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F + + + G A+ SK+ A+Q +A K+ Sbjct: 191 KSFEIALSVQGKEYARASGNSKKEAQQKSAQIAYKKL 227 >gi|89070097|ref|ZP_01157427.1| Ribonuclease III [Oceanicola granulosus HTCC2516] gi|89044318|gb|EAR50461.1| Ribonuclease III [Oceanicola granulosus HTCC2516] Length = 226 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 128/224 (57%), Gaps = 1/224 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + + R+G+ F N LL +ALTH S S + + +RLEFLGDR+LGL+++ L Sbjct: 1 MKLSADLTAFCDRLGHRFENPELLLRALTHPSFSSTGRGDNQRLEFLGDRVLGLVMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F A+EG L+ R+N+LV ETC++VARE+D+ + +++ K ++ AD + Sbjct: 61 FEADPEAREGLLAPRYNALVRKETCAEVAREIDIGAVLKLGRSEMKTGGRRKEALLADAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+Y D G A V +W +R + RDAKT LQE A A+ P Y+ Sbjct: 121 EAVIAAIYRDAGFARAREVVRAHWGKRIGAVAEDARDAKTALQELAQARGEPPPGYREIS 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 R GPDH P FT+ V ++ A+ SKR AEQ AA +L R Sbjct: 181 RHGPDHQPLFTIEVRLATGESARAEAGSKRQAEQAAARTLLDRL 224 >gi|52842090|ref|YP_095889.1| ribonuclease III [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81377263|sp|Q5ZUD5|RNC_LEGPH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|52629201|gb|AAU27942.1| ribonuclease III [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 224 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 120/225 (53%), Gaps = 6/225 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +R+ Y F N + L++ALTH S ++YER EFLGD IL +I+ LFN Sbjct: 1 MKINLERLCRRLNYHFNNIAYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFN 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+LS + LV E +++ARE+DL ++ + + TSI AD +E+ Sbjct: 58 RFPLHSEGQLSRLRSFLVKGEMLAEIAREIDLGDYLFLGQGELRSGGFRRTSILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++AA+YLDGG+ A + + R +DAKT+LQE+ A PEY +T Sbjct: 118 ILAAIYLDGGMIAAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTK 177 Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G +H F V I G+ A G ++R AEQ+AA +L++ Sbjct: 178 IEGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLEQL 222 >gi|91977122|ref|YP_569781.1| ribonuclease III [Rhodopseudomonas palustris BisB5] gi|91683578|gb|ABE39880.1| RNAse III [Rhodopseudomonas palustris BisB5] Length = 271 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 103/222 (46%), Positives = 141/222 (63%), Gaps = 3/222 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+RIG+ FA+ SLL ALTH S + + +SY+RLEFLGD +LGL++S +L+ F + Sbjct: 45 IEQRIGHTFADPSLLNTALTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLYRAFPN 104 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EGELS R LV ETC+ +AR LDL I++ + S+ D+ E++I A Sbjct: 105 ADEGELSKRLADLVRKETCADIARSLDLLDGIKLGTVGAGAGARLRKSVLGDICEAVIGA 164 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 ++LDGG A FV + W +R K + RD KT LQEWA K TP Y+ R+GP H Sbjct: 165 VFLDGGYPAAADFVQRNWTERMRKPARSLRDPKTVLQEWAQGKGLPTPVYREVERTGPHH 224 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 DP+F V V + GL PA+G+ SKRAAE+VAA+ +L REG+ T Sbjct: 225 DPQFRVAVSLPGLEPAEGVGGSKRAAEKVAASVMLAREGVST 266 >gi|51245097|ref|YP_064981.1| ribonuclease III [Desulfotalea psychrophila LSv54] gi|81642476|sp|Q6ANV0|RNC_DESPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|50876134|emb|CAG35974.1| related to ribonuclease III [Desulfotalea psychrophila LSv54] Length = 241 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 5/227 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTL 58 + +++ EK+I Y F + LL+KAL HSS + ++ ERLEF+GD +L L++ Sbjct: 12 NRQKHAEFEKKINYKFIDLRLLQKALIHSSYAFEQAQAGKNNERLEFVGDAVLDLVVGNA 71 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ F +EGEL+ +LV+ + +AR+++L F+ + +SI + Sbjct: 72 LYRRFPEMREGELTRLRAALVNEGHLATMARKINLGYFLCLGKGEDNSKGREKSSILSCA 131 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYK 176 E++I A++ DGG + V++++ + + DAK+ LQE K P Y+ Sbjct: 132 YEAVIGAIFQDGGYDAVAALVERFFLPVIDRRKEDLLLADAKSRLQEILQEKHNEGPSYR 191 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GP H RFT+ V G SK+ AEQ AA +K+ Sbjct: 192 LDNEEGPSHKKRFTISVLFRDEVLGTGEAGSKKEAEQRGAALAIKKI 238 >gi|238916990|ref|YP_002930507.1| ribonuclease III [Eubacterium eligens ATCC 27750] gi|238872350|gb|ACR72060.1| ribonuclease III [Eubacterium eligens ATCC 27750] Length = 237 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 106/228 (46%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M S + IGY F + SLLE ALTHSS ++ ++ ER+EFLGD +L L S Sbjct: 1 MHNKNLSVFMQTIGYDFKDISLLEVALTHSSYANEQKKGNCCDNERMEFLGDAVLELSSS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ + EG+++ S+V T + AR + L +FIR+ SI + Sbjct: 61 DYIYKNHAEMAEGKMTRLRASIVCEPTLALCARAIKLDTFIRLGKGEELTGGRSRDSIVS 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E++I A+YLDGG A FV+K+ F + + G +Y+ Sbjct: 121 DACEAVIGAIYLDGGFANAKEFVNKFILNDLDNKKLFFDS--KTILQEVIQGLGKEVDYE 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP+H+ +F V + GL +G +K++A Q AA L Sbjct: 179 FIGEEGPEHNKQFVVAAVVDGLFNIKGTGHTKKSASQNAAYAALIELK 226 >gi|154253314|ref|YP_001414138.1| ribonuclease III [Parvibaculum lavamentivorans DS-1] gi|154157264|gb|ABS64481.1| Ribonuclease III [Parvibaculum lavamentivorans DS-1] Length = 226 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 94/226 (41%), Positives = 130/226 (57%), Gaps = 4/226 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L + L+ R+ + F + LL +ALTH S +Y+R EFLGDR+LGL+I+ L Sbjct: 1 MGRLN-AALQVRLAHDFKDLGLLSRALTHPSAD---GANYQRFEFLGDRVLGLVIADWLL 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGEL++R+N+LV E C++VA + L + I + + K +I AD E Sbjct: 57 RDFPQADEGELAIRYNALVRKEACAEVAERIGLGACITMGAGEEKAGGRRKPAILADACE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++IAALY DGG++ A F++ W KS + +DAKT LQEWA A+ P Y + R Sbjct: 117 AVIAALYTDGGLQAARRFIETEWAYLVEKSSEIPQDAKTALQEWAQARGQGVPTYTLVGR 176 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDH P FTV V P + SKR AEQ AA +L+ G+W Sbjct: 177 SGPDHAPEFTVEVSAGKAKPLRAQGNSKRQAEQTAARALLEALGVW 222 >gi|15672784|ref|NP_266958.1| ribonuclease III [Lactococcus lactis subsp. lactis Il1403] gi|13878708|sp|Q9CHD0|RNC_LACLA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|12723723|gb|AAK04900.1|AE006313_7 ribonuclease III [Lactococcus lactis subsp. lactis Il1403] gi|326406354|gb|ADZ63425.1| ribonuclease III [Lactococcus lactis subsp. lactis CV56] Length = 231 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 103/223 (46%), Gaps = 9/223 (4%) Query: 8 TLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 L+K++ G F + LL+ A THSS ++ + + ERLEFLGD L L+IS L Sbjct: 3 KLQKKLKNDYGLVFNDEDLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYL 62 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EGELS +S+V E+ + +R F+R+ K + ++ Sbjct: 63 YRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLF 122 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+ + AL++D G++ F+ D KTELQE T YK+ Sbjct: 123 EAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVIDYKTELQEVLQIGGETTISYKIL 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP HD F V +G +G+ SK+ AEQ AA +K Sbjct: 183 KEEGPAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225 >gi|163783627|ref|ZP_02178616.1| RNase III [Hydrogenivirga sp. 128-5-R1-1] gi|159881120|gb|EDP74635.1| RNase III [Hydrogenivirga sp. 128-5-R1-1] Length = 222 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 13/224 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFD 64 + +E+RIGY F N+ LL++A TH S + YE LEFLGD +L +I +L F Sbjct: 2 FEEVEERIGYTFKNKDLLKQAFTHVSYARDAGVSHYEILEFLGDALLNFIIVDILVKEFP 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ L+S E +++A+ELDL +I +S SI DV E+L A Sbjct: 62 EKREGALASLKAYLISEEFFNELAQELDLPRYILMSR------GKKNVSIIGDVFEALWA 115 Query: 125 ALYLDGGIEVA-----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 A+Y+D G + + K ++S + R+D KT LQE ++ P Y+V Sbjct: 116 AVYVDSGRDCNLVKELFNRLFKDRIIETIRSHRIRKDYKTMLQEITQKRWRERPHYRVIS 175 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP+H FTV I G A G SK+ AEQ AA ++++ Sbjct: 176 VEGPEHAKTFTVESSIKG-VSAVGRGKSKKEAEQEAAKRLVEKL 218 >gi|317009322|gb|ADU79902.1| ribonuclease III [Helicobacter pylori India7] Length = 239 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 75/218 (34%), Positives = 112/218 (51%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F E Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQYDE 78 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS S+VS +++A+ + L ++RVSS SI + E+L+A +YL Sbjct: 79 GKLSKLRASIVSVHGFTKLAKAIALQDYLRVSSSEEVSNGREKPSILSSAFEALMAGVYL 138 Query: 129 DGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + G+ + + + D KT LQE A+F V P Y++ GPDH Sbjct: 139 EAGLAKVHKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGPDHH 198 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + + I A SK+ AEQ A + L++ Sbjct: 199 KEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 236 >gi|147678073|ref|YP_001212288.1| ribonuclease III [Pelotomaculum thermopropionicum SI] gi|189043329|sp|A5D1H6|RNC_PELTS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|146274170|dbj|BAF59919.1| dsRNA-specific ribonuclease [Pelotomaculum thermopropionicum SI] Length = 241 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 117/224 (52%), Gaps = 6/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + + L+ R+G A+ + LL +ALTHSS ++ + E+ +RLEFLGD +L L +S L+ Sbjct: 7 KLTLLKNRLGIAWRDEGLLTRALTHSSFTYENRQNGLENNQRLEFLGDAVLELAVSDYLY 66 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+L+ S+V + ++VAREL+L + + + + SI AD E Sbjct: 67 RSKPEMDEGDLTKLRASVVCEPSLARVARELELGTCLYMGKGEERSGGRDRPSILADAFE 126 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 +L+ A+YLD G+E A KY + R RD KTELQE + G +Y + Sbjct: 127 ALLGAVYLDQGLEKAAGLAIKYLAPLIGDVLEGRLERDYKTELQELVQQRGGEQVQYVIL 186 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH FT V G+ QG SK+ AEQ AA + L + Sbjct: 187 KEEGPDHHKSFTAGVLYRGVLVGQGTGRSKKEAEQQAAKKALMK 230 >gi|109947401|ref|YP_664629.1| ribonuclease III [Helicobacter acinonychis str. Sheeba] gi|122973320|sp|Q17XJ6|RNC_HELAH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|109714622|emb|CAJ99630.1| ribonuclease III (RNase III) [Helicobacter acinonychis str. Sheeba] Length = 234 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 118/233 (50%), Gaps = 11/233 (4%) Query: 1 MSALR-------YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGL 53 M Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL Sbjct: 1 MKNKNNKLADCPYITLEKALGYSFKDKHLLEQALTHKSC--KLALNNERLEFLGDAVLGL 58 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +I LL++ F EG+LS S+VSA+ +++AR + L ++RVSS S Sbjct: 59 VIGELLYHKFYQYDEGKLSKLRASIVSAQGFTKLARAISLQDYLRVSSSEETSKGREKPS 118 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGV 171 I + E+L+A +YL+ G++ + + + D KT LQE A+F V Sbjct: 119 ILSSAFEALMAGVYLEAGLDKVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQAQFCV 178 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P Y++ GP H F +V+ I A SK+ AEQ A + L++ Sbjct: 179 IPTYQLLKEKGPAHHKEFEMVLYIQNQMYATAKGKSKKEAEQQCAYQALQKLK 231 >gi|222055246|ref|YP_002537608.1| Ribonuclease III [Geobacter sp. FRC-32] gi|221564535|gb|ACM20507.1| Ribonuclease III [Geobacter sp. FRC-32] Length = 238 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 124/226 (54%), Gaps = 9/226 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61 + LEK I Y F ++SLL +ALTH S + ++ +RLEFLGD ++GL++S LF+ Sbjct: 9 IAALEKLINYDFTDKSLLVEALTHPSFVNESGGKVRQDNQRLEFLGDAVVGLVLSHDLFS 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F ++EGEL+ SLV + + +AR +DL + +++ + S+ AD E+ Sbjct: 69 RFPDSREGELTKLRASLVDEASLAILARAIDLGAHLKLGRGEERSGGRTKPSLLADAYEA 128 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTF 179 L+AA+YLDGGIE A + ++ K RD KTE QE AH + P Y + Sbjct: 129 LLAAVYLDGGIEPAAAIIKSHFASFMEKRNIRTSGRDFKTEFQELAHRLRSLAPRYLLQG 188 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKR 222 SGPDH F+V V I +G+ SK+ AEQ AA + LK+ Sbjct: 189 VSGPDHQRIFSVAVFIGEEFMGEGLAKSKKEAEQAAAEQGIAFLKK 234 >gi|54294754|ref|YP_127169.1| hypothetical protein lpl1831 [Legionella pneumophila str. Lens] gi|81368418|sp|Q5WVI4|RNC_LEGPL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|53754586|emb|CAH16070.1| hypothetical protein lpl1831 [Legionella pneumophila str. Lens] Length = 224 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +R+ Y F N + L++ALTH S ++YER EFLGD IL +I+ LFN Sbjct: 1 MKINLERLCRRLNYHFNNMAYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFN 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+LS + LV E +++ARE+ L ++ + + TSI AD +E+ Sbjct: 58 RFPLHSEGQLSRLRSFLVKGEMLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++AA+YLDGG+ A + + R +DAKT+LQE+ A PEY +T Sbjct: 118 ILAAIYLDGGMTAAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTK 177 Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G +H F V I G+ A G ++R AEQ+AA +L++ Sbjct: 178 VEGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLEQL 222 >gi|208434584|ref|YP_002266250.1| ribonuclease III [Helicobacter pylori G27] gi|226741372|sp|B5Z735|RNC_HELPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|208432513|gb|ACI27384.1| ribonuclease III [Helicobacter pylori G27] Length = 239 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS ++VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRAAIVSAHGFTKLAKAIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + + D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH F + + I A SK+ AEQ A L++ Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQKLK 236 >gi|312143881|ref|YP_003995327.1| ribonuclease III [Halanaerobium sp. 'sapolanicus'] gi|311904532|gb|ADQ14973.1| ribonuclease III [Halanaerobium sp. 'sapolanicus'] Length = 238 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 76/212 (35%), Positives = 109/212 (51%), Gaps = 6/212 (2%) Query: 18 ANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 +N+ LL++ALTH S + + ERLEFLGD +L L +ST +FN F EGEL+ Sbjct: 22 SNKKLLQRALTHKSFPNENKNLSIKDNERLEFLGDSVLSLAVSTYIFNKFSDFPEGELAK 81 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 +VSA ++ A++L+L ++ + SI AD +E++ ALYLD G Sbjct: 82 MRAVVVSAPILAEAAKKLELGRYLFLGKGEEMTGGRERDSILADSMEAIFGALYLDQGFT 141 Query: 134 VAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 A FV K K+ + G +D KT LQE + PEY+V GPDH+ F V Sbjct: 142 AASDFVLKILKEDIKEVAMGNHIQDYKTMLQEIIQQDGNIRPEYEVIDEKGPDHNKTFIV 201 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V++ + G SK+ AEQ AA L + Sbjct: 202 AVKLKENSLGSGQGSSKKEAEQEAAKFALHKL 233 >gi|307637352|gb|ADN79802.1| Ribonuclease III [Helicobacter pylori 908] gi|325995944|gb|ADZ51349.1| Ribonuclease III [Helicobacter pylori 2018] gi|325997538|gb|ADZ49746.1| Ribonuclease III [Helicobacter pylori 2017] Length = 239 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++ VSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLHVSSSEEISKGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + K + + D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH F + + I A SK+ AEQ A + L++ Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLK 236 >gi|260663569|ref|ZP_05864459.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN] gi|260552110|gb|EEX25163.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN] Length = 232 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 67/220 (30%), Positives = 103/220 (46%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L K G F N +LL +A T +S + + + YER+EFLGD +L L +S ++ + Sbjct: 9 LAKTYGIHFNNPALLAEAFTQASYVNEHPHENLKYYERIEFLGDAVLQLFVSEYIYRRYP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G+L+ ++V ++ S+ A+E +IR+ S+ D+ ES I Sbjct: 69 ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRASLLCDIFESFIG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ALYLD G + F+ + DAKT LQE+ V EY + G Sbjct: 129 ALYLDQGRQAVEQFIQTVIFPKLDLGWFDHAVDAKTSLQEFLQRNGDVAIEYDLLSEGGT 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++DP F V V + G A G SK+ AE AA L++ Sbjct: 189 ENDPVFEVEVTVDGKKVATGQGSSKKHAEMDAAKHALEKL 228 >gi|317010882|gb|ADU84629.1| ribonuclease III [Helicobacter pylori SouthAfrica7] Length = 234 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 13 YITLEKALGYSFKDKHLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 70 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA+ +++A+ + L ++RVSS SI + E+L+A Sbjct: 71 YDEGKLSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEETSKGREKPSILSSAFEALMAG 130 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G++ + + + D KT LQE A+F V P Y++ GP Sbjct: 131 VYLEAGLDKVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQAQFCVIPTYQLLKEKGP 190 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H F + + I A SK+ AEQ A + L++ Sbjct: 191 AHHKEFEMALYIQNQMYATAKGKSKKEAEQQCAYQALQKLK 231 >gi|184155714|ref|YP_001844054.1| ribonuclease III [Lactobacillus fermentum IFO 3956] gi|227515694|ref|ZP_03945743.1| ribonuclease III [Lactobacillus fermentum ATCC 14931] gi|238692982|sp|B2GD42|RNC_LACF3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|183227058|dbj|BAG27574.1| ribonuclease III [Lactobacillus fermentum IFO 3956] gi|227085942|gb|EEI21254.1| ribonuclease III [Lactobacillus fermentum ATCC 14931] gi|299783404|gb|ADJ41402.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus fermentum CECT 5716] Length = 232 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 67/220 (30%), Positives = 103/220 (46%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L K G F N +LL +A T +S + + + YER+EFLGD +L L +S ++ + Sbjct: 9 LAKTYGIHFNNPALLAEAFTQASYVNEHPHENLKYYERIEFLGDAVLQLFVSEYIYRRYP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G+L+ ++V ++ S+ A+E +IR+ S+ D+ ES I Sbjct: 69 ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRASLLCDIFESFIG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ALYLD G + F+ + DAKT LQE+ V EY + G Sbjct: 129 ALYLDQGRQAVEQFIQTVIFPKLDLGWFDHAVDAKTSLQEFLQRNGDVAIEYDLLSEGGT 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++DP F V V + G A G SK+ AE AA L++ Sbjct: 189 ENDPVFEVEVTVDGKKVATGQGSSKKHAEMEAAKHALEKL 228 >gi|229822809|ref|ZP_04448879.1| hypothetical protein GCWU000282_00098 [Catonella morbi ATCC 51271] gi|229787622|gb|EEP23736.1| hypothetical protein GCWU000282_00098 [Catonella morbi ATCC 51271] Length = 247 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 6/222 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLIS 56 M+ +EK++ F L+++A H+S ++ + YERLEFLGD +L LL S Sbjct: 3 MNRT-IRVIEKQLNLTFKKPELIQQAFRHTSYANEQARRHLPHYERLEFLGDAVLELLSS 61 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L++ + + EG+L+ +V ++ + +AR+L F+++ SI A Sbjct: 62 EFLYHSYPNLPEGKLTRMRAQIVQEKSLAYLARQLKFNQFLQLGKGEELSGGRERDSILA 121 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E+++ A+Y D G+EVA ++++ + L + K G Sbjct: 122 DCFEAVLGAIYEDQGLEVAKDYLNRVMFSQHQLLLGRVTQDHKTLFQERVQKQGTVQIDY 181 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 GP HD FTV + ++ A G SK+ AE AA Sbjct: 182 RLKDKQGPAHDQIFTVELYVNDQHIATGQGSSKKQAEMQAAE 223 >gi|262170590|ref|ZP_06038268.1| ribonuclease III [Vibrio mimicus MB-451] gi|261891666|gb|EEY37652.1| ribonuclease III [Vibrio mimicus MB-451] Length = 221 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + ERLEFLGD IL +I+ L++ F Sbjct: 2 NKLTSKLGYTFKEIELLNLALTHRSA---NGKHNERLEFLGDSILSFVIADELYHRFPKV 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 59 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118 Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A + + +K G ++D KT LQE+ + P Y VT G Sbjct: 119 YLDSDLETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 218 >gi|258622345|ref|ZP_05717370.1| Ribonuclease 3 [Vibrio mimicus VM573] gi|258626729|ref|ZP_05721551.1| Ribonuclease 3 [Vibrio mimicus VM603] gi|258580985|gb|EEW05912.1| Ribonuclease 3 [Vibrio mimicus VM603] gi|258585361|gb|EEW10085.1| Ribonuclease 3 [Vibrio mimicus VM573] Length = 225 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + ERLEFLGD IL +I+ L++ F Sbjct: 6 NKLTSKLGYTFKEIELLNLALTHRSA---NGKHNERLEFLGDSILSFVIADELYHRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A + + +K G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSDLETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222 >gi|294102050|ref|YP_003553908.1| ribonuclease III [Aminobacterium colombiense DSM 12261] gi|293617030|gb|ADE57184.1| ribonuclease III [Aminobacterium colombiense DSM 12261] Length = 240 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 ++ ++R+GY F+ + +L++ALTH+S +H ERLEFLGD +L L++S LFN + Sbjct: 16 LASFQERLGYLFSKKEILQEALTHASYAHEKGLHFHNERLEFLGDAVLELIVSANLFNGY 75 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ ++LV S + + L IR+ L + S SI AD E+++ Sbjct: 76 PDVDEGTLTRYRSNLVCKNALSVWGKSIGLPQIIRLGKGLEQQGAS--ASIIADTSEAVL 133 Query: 124 AALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++ DGG A V +Y + Q + + D K+ +QE + P Y V G Sbjct: 134 GAVFSDGGFAAAQNVVRRYLFFQSNINAYDKNSDPKSLIQEETQKRGLGQPCYVVISTEG 193 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P H P FTV ++I G G S + AE +AA LK+ G+ Sbjct: 194 PPHMPIFTVQLKIDGQLYGSGQGHSIKVAETLAAQRALKQVGL 236 >gi|262166502|ref|ZP_06034239.1| ribonuclease III [Vibrio mimicus VM223] gi|262026218|gb|EEY44886.1| ribonuclease III [Vibrio mimicus VM223] Length = 225 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + ERLEFLGD IL +I+ L++ F Sbjct: 6 NKLTSKLGYTFKEIELLNLALTHRSA---NGKHNERLEFLGDSILSFVIADELYHRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A + + +K G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSELETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222 >gi|283798076|ref|ZP_06347229.1| ribonuclease III [Clostridium sp. M62/1] gi|291074218|gb|EFE11582.1| ribonuclease III [Clostridium sp. M62/1] gi|295091753|emb|CBK77860.1| RNAse III [Clostridium cf. saccharolyticum K10] gi|295114861|emb|CBL35708.1| RNAse III [butyrate-producing bacterium SM4/1] Length = 234 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + LE +I Y F ++SL+E A++HSS ++ ERLEFLGD +L ++ S Sbjct: 1 MPREHFRELEDKIHYCFKDKSLIELAMSHSSYANEKHLGKLGCNERLEFLGDAVLEIVSS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF+ F EG+L+ S+V T + A ++ L ++ + S+ + Sbjct: 61 DFLFHRFPDMPEGDLTKTRASMVCEPTLAYCAEQIGLGGYLLLGKGEDATGGRTRNSVVS 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LI A+YLDGG A F+ Y K D+KT LQE A+ Y+ Sbjct: 121 DAMEALIGAIYLDGGFSCAKEFILNYVLNDMEHK-KLFYDSKTILQEMVQARGTELLSYE 179 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + GPDH+ F V I ++G +K+AAEQ+AA + + + Sbjct: 180 LLKEEGPDHNKTFEVAALIGEREVSRGAGRTKKAAEQMAAYQAILKLK 227 >gi|260771275|ref|ZP_05880202.1| ribonuclease III [Vibrio furnissii CIP 102972] gi|260613872|gb|EEX39064.1| ribonuclease III [Vibrio furnissii CIP 102972] Length = 225 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 119/226 (52%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ S LE ++GY F N L+ ALTH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PISRLETKLGYQFNNAELISLALTHRSA---NGKHNERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE DL ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD IEVA V +++ R ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDIEVARATVLSWYQSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FTV +I+G+ P G S+R AEQ AA L++ Sbjct: 177 NIKGEAHNQEFTVACDIAGIGAPVIGKGTSRRKAEQAAAETALEQL 222 >gi|315638039|ref|ZP_07893224.1| ribonuclease III [Campylobacter upsaliensis JV21] gi|315481887|gb|EFU72506.1| ribonuclease III [Campylobacter upsaliensis JV21] Length = 224 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 122/222 (54%), Gaps = 4/222 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE ++ Y F ++ LL ALTH S +Y + ERLEFLGD +L L++ LF+ F Sbjct: 3 KLELLEAKLNYKFKDQKLLIYALTHKSAKKNY--NNERLEFLGDAVLDLVVGEFLFHKFK 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+LS +LV+ ++ +++A L+L +FI +S + + SI +D E+LI Sbjct: 61 NEAEGDLSKLRAALVNEKSFAKIATSLNLGAFIFMSIAEQNNGGKTKPSILSDAFEALIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL+L+ G A + ++ +D KT+LQE AK G+TPEY+ G Sbjct: 121 ALHLEAGFIKAKEIALRLIEENFPNIDAKSLFKDYKTKLQEITQAKMGLTPEYETLRAFG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 181 PDHQKSFEIALNLEGKEMARAIASSKKEAQQMAAKLTLEKLG 222 >gi|108563072|ref|YP_627388.1| ribonuclease III [Helicobacter pylori HPAG1] gi|107836845|gb|ABF84714.1| ribonuclease III [Helicobacter pylori HPAG1] Length = 240 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 19 YTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 76 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 77 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 136 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + + D KT LQE A+F V P Y++ GP Sbjct: 137 VYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 196 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH F + + I A SK+ AEQ A L++ Sbjct: 197 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQKLK 237 >gi|325290420|ref|YP_004266601.1| RNAse III [Syntrophobotulus glycolicus DSM 8271] gi|324965821|gb|ADY56600.1| RNAse III [Syntrophobotulus glycolicus DSM 8271] Length = 259 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 11/226 (4%) Query: 7 STLEKRIGYAFANRS--LLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60 + ++G N LL ALTH S + +E+ +RLEFLGD +L +I L+ Sbjct: 34 TAFITKLGLE--NPENQLLYTALTHPSYTFENPASGRENNQRLEFLGDAVLDFVIGEYLY 91 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGEL+ ++V+ T ++ AR + + + + + SI AD +E Sbjct: 92 LKYRDKPEGELTKMRAAVVNESTLARQARGIGIGQALFLGKGEQYSGGRERASILADALE 151 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++I A+YL G E +F+ K K + + K + Y++ Sbjct: 152 AVIGAVYLQYGFEEVRSFILKMLVPEIEAIDKGNYGDFKTILQERAQKEDMEVSYRIIDE 211 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDH+ FT V + +G +K+ AEQ AA L+ +W Sbjct: 212 QGPDHNKLFTAGVYVQNNFYGKGTGKTKKEAEQHAARLALE---LW 254 >gi|291459099|ref|ZP_06598489.1| ribonuclease III [Oribacterium sp. oral taxon 078 str. F0262] gi|291418353|gb|EFE92072.1| ribonuclease III [Oribacterium sp. oral taxon 078 str. F0262] Length = 234 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 8/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M L LE+++ Y+F +R LL ALTH S S+ + S +RLEFLGD +L L S Sbjct: 1 MDRLSL--LEEKLAYSFRDRELLLHALTHPSYSNEQGDPKEASNQRLEFLGDAVLELAAS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L++ +EG ++ +LV T ++ AR+L L ++ + ++ S+ + Sbjct: 59 DFLYHRVPVIQEGVMTKLRAALVCEPTLAEAARKLSLGDYLVLGRGEGREGIQLRDSVLS 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E++I A+YLDGG A F+ + K + + +K ++ Y Sbjct: 119 DAFEAVIGAIYLDGGFSAAQCFIKRLVLSDIEN--KSLYRDAKTMLQEYVSKQRLSLRYA 176 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + SGP H+ + V I +G SK+ AEQ AA + L + Sbjct: 177 LLEESGPCHERFYRVSALIEEKEYGRGEGSSKKKAEQAAAYQALLKIK 224 >gi|302874772|ref|YP_003843405.1| ribonuclease III [Clostridium cellulovorans 743B] gi|307690613|ref|ZP_07633059.1| ribonuclease III [Clostridium cellulovorans 743B] gi|302577629|gb|ADL51641.1| ribonuclease III [Clostridium cellulovorans 743B] Length = 235 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 116/226 (51%), Gaps = 6/226 (2%) Query: 1 MSA--LRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLIS 56 M+ R LE+++ +F N LL ALTHSS + + + ERLEFLGD +L L IS Sbjct: 1 MNQRIKRIRILEEQLNVSFENIDLLNTALTHSSFVNQKKHIDYNERLEFLGDSVLQLTIS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF EGEL+ + +V + V R+ ++ +F+ +S TSI A Sbjct: 61 EYLFKELHGKSEGELTRLRSLIVCENSLHSVGRDWNIGNFLLMSKGEELTGGRSRTSILA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPE 174 D VE++IAA+YLD G + A F+ ++K+ K D KT LQE ++ Sbjct: 121 DAVEAVIAAIYLDKGYDAAREFILLHFKEVINLALDNKIVLDYKTRLQEVLQKDGEISIA 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 YK+ GP H RF V +E++ G SK+ AEQ+AA EVL Sbjct: 181 YKLEKYDGPPHRRRFFVNLEVANKVLGSGEGFSKKEAEQMAAKEVL 226 >gi|291524528|emb|CBK90115.1| RNAse III [Eubacterium rectale DSM 17629] gi|291527954|emb|CBK93540.1| RNAse III [Eubacterium rectale M104/1] Length = 227 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 67/209 (32%), Positives = 102/209 (48%), Gaps = 6/209 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + + +IGY F NR LLE+ALTHSS ++ ERLEFLGD +L ++ S LF Sbjct: 3 DLNEFQSKIGYTFKNRHLLEQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSEFLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ EGEL+ S+V T + + LDL ++R+ SI +D +E Sbjct: 63 INYPQKPEGELTKLRASIVCEPTLALCTKPLDLGKYLRLGRGEDHTGGRKRKSILSDALE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++I A+YLDGG A FV ++ F + + Y++ Sbjct: 123 AVIGAIYLDGGFTNAKEFVLRFIMTDIENKQLFYDS--KTILQELIQGRHEQLSYELIDE 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SGPDHD +FTV V + G ++G +K+ Sbjct: 181 SGPDHDKQFTVAVLVDGERVSEGEGHTKK 209 >gi|238923872|ref|YP_002937388.1| ribonuclease III [Eubacterium rectale ATCC 33656] gi|238875547|gb|ACR75254.1| ribonuclease III [Eubacterium rectale ATCC 33656] Length = 237 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 67/209 (32%), Positives = 102/209 (48%), Gaps = 6/209 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + + +IGY F NR LLE+ALTHSS ++ ERLEFLGD +L ++ S LF Sbjct: 13 DLNEFQSKIGYTFKNRHLLEQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSEFLF 72 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ EGEL+ S+V T + + LDL ++R+ SI +D +E Sbjct: 73 INYPQKPEGELTKLRASIVCEPTLALCTKPLDLGKYLRLGRGEDHTGGRKRKSILSDALE 132 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++I A+YLDGG A FV ++ F + + Y++ Sbjct: 133 AVIGAIYLDGGFTNAKEFVLRFIMTDIENKQLFYDS--KTILQELIQGRHEQLSYELIDE 190 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SGPDHD +FTV V + G ++G +K+ Sbjct: 191 SGPDHDKQFTVAVLVDGERVSEGEGHTKK 219 >gi|51598958|ref|YP_073146.1| ribonuclease III [Borrelia garinii PBi] gi|219684131|ref|ZP_03539075.1| ribonuclease III [Borrelia garinii PBr] gi|81609804|sp|Q660G7|RNC_BORGA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|51573529|gb|AAU07554.1| ribonuclease III [Borrelia garinii PBi] gi|219672120|gb|EED29173.1| ribonuclease III [Borrelia garinii PBr] Length = 245 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59 + S + + F N LL AL+HSS S+ ++ ERLEFLGD +L L+I+ L Sbjct: 15 KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKADNNERLEFLGDSVLNLIITDHL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EGELS + +VS ++ S +ARE+DL S+I + + I AD + Sbjct: 75 YKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134 Query: 120 ESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + A+YLD G +A FV R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 135 EAFVGAIYLDSGFSMATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V + + + G SK+ AE AA LK Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240 >gi|258514469|ref|YP_003190691.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771] gi|257778174|gb|ACV62068.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771] Length = 259 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 113/225 (50%), Gaps = 6/225 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 + L +++G A+ + +LL +ALTHSS + + +RLEFLGD +L LL+S Sbjct: 4 NQDNIMQLMQQVGVAWNDENLLWQALTHSSYVYESGSAAHTNNQRLEFLGDAVLELLVSG 63 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L++ + EGEL+ ++V + ++VAR+L+L +R+ + SI AD Sbjct: 64 YLYSSYPECAEGELTKLRAAIVCEPSLAKVARQLNLGYCLRMGKGEERSGGRERPSILAD 123 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY 175 E+L+ A+YLD G+E F K+ G+ RD KTELQE K Y Sbjct: 124 SFEALLGAVYLDQGLEKTRMFALKFLAPVINDVLEGRVDRDYKTELQEMLQKKSPEPISY 183 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + GPDH FT V G+ QG SK+ AEQ AA L Sbjct: 184 VILNEEGPDHQKLFTAGVVYCGIIIGQGTGRSKKEAEQQAAKIAL 228 >gi|32490945|ref|NP_871199.1| hypothetical protein WGLp196 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173145|sp|Q8D305|RNC_WIGBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|25166151|dbj|BAC24342.1| rnc [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 226 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 6/229 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L ++ L+K++GY F N +L++ALTH S S ++ ERLEFLGD IL +IS L+ Sbjct: 1 MKNLFFNKLQKKMGYLFHNNIILKQALTHRSFSS---KNNERLEFLGDSILNYIISDALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N+F + EG+LS + LV T +++ARE L ++ + K SI ++ +E Sbjct: 58 NNFTNIPEGKLSQMRSYLVRGNTLAEIAREFCLGDYLILGIGEVKTGGKNRDSILSNAME 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I ++LD I V ++K R ++D KT LQE+ P+Y + Sbjct: 118 AIIGGIFLDSNINKTHEIVISWYKNRLYSMSLKNLKKDPKTRLQEYLQGNKFSLPQYYIK 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGIW 226 +G H+ FT+ I L + G ++R AEQ AA + L I Sbjct: 178 NITGESHNQEFTICCFIDDLKKSVIGYGKTRRKAEQSAAKQALLLFNIL 226 >gi|39935763|ref|NP_948039.1| ribonuclease III [Rhodopseudomonas palustris CGA009] gi|192291350|ref|YP_001991955.1| ribonuclease III [Rhodopseudomonas palustris TIE-1] gi|81562548|sp|Q6N6C1|RNC_RHOPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|39649616|emb|CAE28138.1| putative ribonuclease III [Rhodopseudomonas palustris CGA009] gi|192285099|gb|ACF01480.1| Ribonuclease III [Rhodopseudomonas palustris TIE-1] Length = 272 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 105/221 (47%), Positives = 141/221 (63%), Gaps = 2/221 (0%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+R+G++FA+ SLL A TH S S +SY+RLEFLGD +LGL++S +L+ F A Sbjct: 47 IEQRLGHSFADPSLLTTAFTHVSALKSARRTDSYQRLEFLGDHVLGLIVSDMLYRAFPDA 106 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS R LV ETC+ VAR LDL I++ + S+ D+ E++I A+ Sbjct: 107 DEGELSKRLADLVRKETCADVARSLDLVEGIKLGTVGAGAGAKLRKSVLGDICEAVIGAI 166 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLDGG E A FV + W +R K + RD KT LQEWA A+ TP Y+ R+GP HD Sbjct: 167 YLDGGYEAASDFVRRNWTERMRKPARSLRDPKTVLQEWAQARGLPTPVYREVERTGPHHD 226 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 P+F V V + GL PA+G+ SKRAAE+VAA+ +L REG+ T Sbjct: 227 PQFRVAVILPGLEPAEGLGGSKRAAEKVAASAMLAREGVGT 267 >gi|301058150|ref|ZP_07199202.1| ribonuclease III [delta proteobacterium NaphS2] gi|300447782|gb|EFK11495.1| ribonuclease III [delta proteobacterium NaphS2] Length = 236 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61 + +L + +GY+F + +L+ +A HSS + E ERLEFLGD +L L +S LL Sbjct: 10 FKSLCETLGYSFNDIALVIQAFRHSSYVNEQMVPGLEDNERLEFLGDAVLDLAVSHLLME 69 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 A EGELS + +V VA L+L ++ + + + SI ADV E+ Sbjct: 70 RNPHANEGELSRFRSMVVDEAGLHDVATRLELGRYLLLGKGEDQSLGRQKPSILADVTEA 129 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A+YLDGG ++ ++K + + + +D K+ LQE+ F P+Y++T Sbjct: 130 LLGAIYLDGGFDITKKVIEKLFAPLLEKVGTDDLVQDYKSLLQEFTQQAFKCLPQYRLTE 189 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP HD F +V+ ++G+ A+GM SK+ AEQ AA E R Sbjct: 190 EKGPAHDKVFCIVLAVNGIVMAEGMGKSKKEAEQHAAKEAFLRL 233 >gi|83855027|ref|ZP_00948557.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1] gi|83941550|ref|ZP_00954012.1| Ribonuclease III [Sulfitobacter sp. EE-36] gi|83842870|gb|EAP82037.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1] gi|83847370|gb|EAP85245.1| Ribonuclease III [Sulfitobacter sp. EE-36] Length = 228 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 130/224 (58%), Gaps = 1/224 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M E RIGY FA LL +A+TH+S+S + ++ +RLEFLGDR+LGL+++ L Sbjct: 1 MKLNADLRAFEGRIGYHFAKPELLNRAVTHASMSSANRDDNQRLEFLGDRVLGLVMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 +A EG+L+ RFN+LV E C++VARE+D+ + +++ ++ D + Sbjct: 61 LKLDPAATEGQLAPRFNALVRKEACAEVAREIDMGAVLKLGRSEMLSGGRRKQALLGDAI 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+YLDGG + A + + W R ++ + RDAKT LQEWA A+ P Y T Sbjct: 121 EAIIAAVYLDGGFDEAKALILRLWGDRVMQVKQDARDAKTALQEWAQARGLPPPAYVQTD 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 R GPDH P FT+ I A A SKR AEQ AA +L + Sbjct: 181 RQGPDHAPVFTITARIENGASAVASAPSKRQAEQAAAKTLLAQL 224 >gi|222152723|ref|YP_002561900.1| ribonuclease III [Streptococcus uberis 0140J] gi|254807903|sp|B9DRH1|RNC_STRU0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|222113536|emb|CAR41327.1| ribonuclease III [Streptococcus uberis 0140J] Length = 230 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 114/226 (50%), Gaps = 9/226 (3%) Query: 7 STLEKRIG----YAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 LE + F +++LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 2 KNLEALLKSSFAIEFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + EGELS + + +V E+ + +R +I++ K +I D+ Sbjct: 62 LFKKYPHKAEGELSKQRSMIVREESLASFSRHCAFEPYIKLGKGEEKSGGRNRDTILGDL 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD G+E F+++ + K + + D KT LQE AK +YKV Sbjct: 122 FEAFLGALLLDKGVEEVRRFLNQVMIPQVEKGNFEKVNDYKTSLQEILQAKGDTIIDYKV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H +F VVV + + ++G+ SK+ AEQ AA LK Sbjct: 182 INESGPAHAKQFEVVVLANQVELSKGIGRSKKLAEQNAAENALKAL 227 >gi|216263528|ref|ZP_03435523.1| ribonuclease III [Borrelia afzelii ACA-1] gi|215980372|gb|EEC21193.1| ribonuclease III [Borrelia afzelii ACA-1] Length = 245 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59 + S + + F N LL AL+HSS S+ ++ ERLEFLGD +L L+I+ L Sbjct: 15 KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKSDNNERLEFLGDSVLNLIITDHL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EGELS + +VS ++ S +ARE+DL S+I + + I AD + Sbjct: 75 YKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134 Query: 120 ESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + A+YLD G +A FV R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 135 EAFVGAIYLDSGFSIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPNYKL 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V + + + G SK+ AE AA LK Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240 >gi|218960589|ref|YP_001740364.1| dsRNA-specific ribonuclease [Candidatus Cloacamonas acidaminovorans] gi|167729246|emb|CAO80157.1| dsRNA-specific ribonuclease [Candidatus Cloacamonas acidaminovorans] Length = 255 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 8/228 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES------YERLEFLGDRILGLLISTLL 59 S L+K+I Y F + +LL ALTH S H + E +ER+EFLGD ILG ++S L Sbjct: 28 LSQLQKKIDYTFHDPTLLYAALTHKSYLHRHFEDHKTPSPFERMEFLGDSILGFIVSKEL 87 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F +EG+LS + +VS + A+ +DL ++ +S + ++ + SI +D + Sbjct: 88 FTRHPDEQEGKLSKLKSKIVSETYLTLKAKAIDLGKYLLLSPEEQQSGGASKPSILSDAM 147 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E+LI A+YLD GI A F+ + ++ + K+ LQE+ ++ P Y Sbjct: 148 EALICAIYLDSGISAATRFIRNHILNNYQETVTREELVNYKSILQEYMQSRNQPPPTYVT 207 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP+H F V V G +K+ A Q AA ++ GI Sbjct: 208 VAEQGPEHHKTFVVEVRWGNKLLGTGKGNTKKNAHQEAARMACQKLGI 255 >gi|86749730|ref|YP_486226.1| ribonuclease III [Rhodopseudomonas palustris HaA2] gi|86572758|gb|ABD07315.1| RNAse III [Rhodopseudomonas palustris HaA2] Length = 271 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 102/221 (46%), Positives = 141/221 (63%), Gaps = 3/221 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E+RIG++FA+ SLL ALTH S + + +SY+RLEFLGD +LGL++S +L+ F Sbjct: 44 AIEQRIGHSFADPSLLNTALTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLYRAFP 103 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +A EGELS R LV ETC+ VAR LDL +++ + S+ D+ E++I Sbjct: 104 NADEGELSKRLADLVRKETCADVARSLDLDEGVKLGTVGAGAGARLRKSVLGDICEAVIG 163 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A++LDGG A FV + W +R K + RD KT LQEWA K TP Y+ R+GP Sbjct: 164 AVFLDGGYPAAAEFVQRNWTERMRKPTRSLRDPKTVLQEWAQGKGLPTPVYREVERTGPH 223 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 HDP+F V V + GL PA+G+ SKRAAE+VAA+ +L REG+ Sbjct: 224 HDPQFRVAVSLPGLDPAEGVGGSKRAAEKVAASVMLAREGV 264 >gi|81648073|sp|Q6G459|RNC_BARHE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|49238110|emb|CAF27317.1| Ribonuclease III [Bartonella henselae str. Houston-1] Length = 235 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 117/226 (51%), Positives = 155/226 (68%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LEK G+ F ++ L+KALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 1 MKLPMIDQLEKLTGHYFKDKKKLKKALTHSSVQGSEQGNYERLEFLGDRVLGLLIAEMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR NSLV+A+TC+ +A E++L I V +++ +T++ ADV+E Sbjct: 61 QLFPQASEGELSVRLNSLVNAQTCADIALEMELPVMIHVGFEMKNLKGRRLTNMYADVIE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG+E F+ +YW+ RA + RRDAKT+LQEWAH + GV P Y+V R Sbjct: 121 ALIAVIYLDGGLESVRPFIQRYWQSRAKQMDAGRRDAKTQLQEWAHVQGGVQPHYRVVKR 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDP F V V I G A G SKR AE++AA ++L+REGIW Sbjct: 181 SGPDHDPVFMVEVSIPGFASEIGQGNSKRCAERMAAEKILRREGIW 226 >gi|154500966|ref|ZP_02039004.1| hypothetical protein BACCAP_04652 [Bacteroides capillosus ATCC 29799] gi|150269990|gb|EDM97509.1| hypothetical protein BACCAP_04652 [Bacteroides capillosus ATCC 29799] Length = 223 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 78/212 (36%), Positives = 120/212 (56%), Gaps = 5/212 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 LE+++GY F NR+LLE ALTHSS ++ + +S ERLEFLGD +LG++ + L+ Sbjct: 2 EKLEEKLGYTFQNRALLENALTHSSYANENKHTGAQSNERLEFLGDSVLGMVTADYLYRV 61 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+L+ +LV + +VA++L+L +++++ SI AD VE++ Sbjct: 62 HPDLPEGDLTRTRAALVCEGSLVEVAQQLELGTYLKLGKGEDAGGGRERPSIVADAVEAV 121 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +AA+YLDGGI A + ++ R + RD KT LQE + G Y++ +G Sbjct: 122 LAAVYLDGGIGSARKIIQRFILDREEEK-SGSRDYKTALQELVQRESGQVLAYRLVGSTG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 PDH RF V VE++G G SK+ AEQ+ Sbjct: 181 PDHAKRFQVEVELNGTPVGAGEGRSKKEAEQM 212 >gi|148827174|ref|YP_001291927.1| ribonuclease III [Haemophilus influenzae PittGG] gi|189043320|sp|A5UFI8|RNC_HAEIG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|148718416|gb|ABQ99543.1| ribonuclease III [Haemophilus influenzae PittGG] Length = 227 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 122/231 (52%), Gaps = 11/231 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L LE++IGY F + +LL++ALTH S + + ERLEFLGD IL I+ L+ Sbjct: 1 MNHLD--RLERKIGYRFNDIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ +L ++ + S K+ SI AD VE Sbjct: 56 HQFPRCNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD G+ V + +++Q +K G ++DAKT LQE+ K P Y+V Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVV 175 Query: 179 FRSGPDHDPRFTVVVEIS--GLA--PAQGMDCSKRAAEQVAAAEVLKREGI 225 G H FTV ++ G S+R AEQ AA ++LK I Sbjct: 176 NIQGEAHCQIFTVECKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226 >gi|300854469|ref|YP_003779453.1| dsRNA-specific ribonuclease [Clostridium ljungdahlii DSM 13528] gi|300434584|gb|ADK14351.1| dsRNA-specific ribonuclease [Clostridium ljungdahlii DSM 13528] Length = 235 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 5/230 (2%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLIST 57 M + + LEK+ +F+N+ ++E ALTHSS ++ + ERLEFLGD +L L IS Sbjct: 1 MEEIGFIELLEKKFNMSFSNKEIIEVALTHSSYANGRKNIKFNERLEFLGDSVLQLCISE 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + S EGEL+ + + +V + VA++ +L +I++S TSI AD Sbjct: 61 YLFLKYKSKPEGELTKKRSLIVCENSLYHVAKKWNLGKYIKMSKGEEITGGRERTSILAD 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEY 175 VE++IAA+YL+ G E G F+ + ++ + K R D KT+LQE V+ EY Sbjct: 121 CVEAIIAAIYLNFGYENTGKFIIENFQDIIENAIKNRIIMDYKTKLQETLQKDGDVSIEY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + GP H +F V G+ SK+ +EQ AA + L + + Sbjct: 181 NLVKYEGPPHRRKFYTEVCTEKNVLGSGVGYSKKESEQNAAQDALMKLNV 230 >gi|225570731|ref|ZP_03779754.1| hypothetical protein CLOHYLEM_06832 [Clostridium hylemonae DSM 15053] gi|225160474|gb|EEG73093.1| hypothetical protein CLOHYLEM_06832 [Clostridium hylemonae DSM 15053] Length = 231 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 109/226 (48%), Gaps = 5/226 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57 LEKRIGY F LL+KA+ HSS ++ E ERLEFLGD +L L+ S Sbjct: 1 MNQDLKQLEKRIGYTFKEFGLLKKAMMHSSYANEQHLHKYECNERLEFLGDAVLELVSSE 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF EGEL+ S+V + AREL + F+ + SI +D Sbjct: 61 FLFYEHAKMPEGELTKTRASMVCEPALAFCARELQIGDFLLLGKGEDATGGRKRESITSD 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+Y+DGG A F++++ + K D+KT LQE A F Y + Sbjct: 121 AMEALIGAIYIDGGFANAKEFIERFILKDLENR-KLFFDSKTILQEIVQANFKDAITYHL 179 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V V I G +K+AAEQ AA + + + Sbjct: 180 IGEEGPDHDKSFLVAVHIGEDEYGIGRGRTKKAAEQEAAYQSILKL 225 >gi|219685563|ref|ZP_03540380.1| ribonuclease III [Borrelia garinii Far04] gi|219672962|gb|EED29984.1| ribonuclease III [Borrelia garinii Far04] Length = 246 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59 + S + + F N LL AL+HSS S+ ++ ERLEFLGD +L L+I+ L Sbjct: 16 KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKADNNERLEFLGDSVLNLIITDHL 75 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EGELS + +VS ++ S VARE++L S+I + + I AD + Sbjct: 76 YKTYPNKSEGELSKARSYIVSEDSLSSVAREIELGSYILLGRGEESNDGRNKKGILADAI 135 Query: 120 ESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + A+YLD G +A FV R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 136 EAFVGAIYLDSGFSMATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 195 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V + + + G SK+ AE AA LK Sbjct: 196 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 241 >gi|170289493|ref|YP_001739731.1| ribonuclease III [Thermotoga sp. RQ2] gi|238688867|sp|B1LCY9|RNC_THESQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|170176996|gb|ACB10048.1| Ribonuclease III [Thermotoga sp. RQ2] Length = 240 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 9/227 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58 +K+ G F N LL +AL HSS ++ ES E+LEFLGD +L L + + Sbjct: 9 VEEFQKKTGINFKNEELLFRALCHSSYANEQNQAGRKNVESNEKLEFLGDAVLELFVCEI 68 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + A+ G+L+ ++ S E + V+R+++L F+ + K SI AD Sbjct: 69 LYKKYPEAEVGDLARVKSAAASEEVLALVSRKMNLGKFLFLGKGEEKTGGRDRDSILADA 128 Query: 119 VESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E+L+AA+YLD G E + + + G+ D KT LQE ++ V PEY Sbjct: 129 FEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYV 188 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + D D F V V + G A G +K+ AE+ AA ++ Sbjct: 189 LVRTEKNDGDRIFVVEVRVDGKTIATGRGRTKKEAEKEAARIAYEKL 235 >gi|126667175|ref|ZP_01738149.1| ribonuclease III [Marinobacter sp. ELB17] gi|126628331|gb|EAZ98954.1| ribonuclease III [Marinobacter sp. ELB17] Length = 229 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 113/224 (50%), Gaps = 6/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L++RIGY F ++ L ALTH S + ++ ERLEFLGD I+ ++I+ LF F Sbjct: 6 DLEPLQRRIGYQFKSQERLLLALTHRSFGN---QNNERLEFLGDSIVNMVIAEHLFRRFP 62 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A+EG+LS +V T +++ RE DL S++R+ S K SI AD VES+I Sbjct: 63 KAREGQLSRLRARMVKGVTLAEIGREFDLGSYLRLGSGELKSGGFRRESILADAVESVIG 122 Query: 125 ALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD A + + L ++D KT LQE+ ++ P Y V G Sbjct: 123 AIYLDSDFVTCQAQILRWFDLRLQNLDLQDTQKDPKTRLQEYLQSRQFPLPIYDVLSVDG 182 Query: 183 PDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 H+ F + +S L G S+R AEQ AA LK G+ Sbjct: 183 EAHNQTFHISCALSSLGRKTTGSGNSRRIAEQQAARNALKELGV 226 >gi|270156955|ref|ZP_06185612.1| ribonuclease III [Legionella longbeachae D-4968] gi|289164621|ref|YP_003454759.1| ribonuclease III [Legionella longbeachae NSW150] gi|269988980|gb|EEZ95234.1| ribonuclease III [Legionella longbeachae D-4968] gi|288857794|emb|CBJ11638.1| putative ribonuclease III [Legionella longbeachae NSW150] Length = 227 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 120/225 (53%), Gaps = 6/225 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +R+GY F N + L++ALTH S+ +YER EFLGD IL +I+ LF+ Sbjct: 1 MKIDLERLCRRLGYHFKNSAYLKQALTHCSVGSE---NYERFEFLGDSILSFVIANELFH 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+LS + LV E ++A+E++L F+ + K SI +D +E+ Sbjct: 58 RFPLQSEGQLSRLRSFLVRGEMLVELAKEIELGDFLFLGQGELKSGGFRRASILSDALEA 117 Query: 122 LIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA++LDGGI+ A + + +DAKT+LQE+ A+ PEY +T Sbjct: 118 VFAAVFLDGGIDCAKEVILKLYRIRLESPNLNDCLKDAKTQLQEYLQAEKIPLPEYILTK 177 Query: 180 RSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 G +H+ F + ++G+ G ++R AEQ+AA +L+R Sbjct: 178 IEGDEHNQIFYITCSVNGMKQQTFGQGSNRRKAEQLAAKAMLERL 222 >gi|217032489|ref|ZP_03437981.1| hypothetical protein HPB128_156g19 [Helicobacter pylori B128] gi|298736360|ref|YP_003728886.1| ribonuclease 3 [Helicobacter pylori B8] gi|216945835|gb|EEC24456.1| hypothetical protein HPB128_156g19 [Helicobacter pylori B128] gi|298355550|emb|CBI66422.1| ribonuclease 3 [Helicobacter pylori B8] Length = 239 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 114/221 (51%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 18 YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA +++A+ + L ++RVSS SI + E+L+A Sbjct: 76 YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + + D KT LQE A+F V P Y++ GP Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH F + + I A SK+ AEQ A L++ Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQKLK 236 >gi|317129239|ref|YP_004095521.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522] gi|315474187|gb|ADU30790.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522] Length = 253 Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 5/225 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 L Y + N + +A THSS + ++ + ERLEFLGD +L L IS Sbjct: 26 KLEYKDFLTSLEVKTTNVDIYIQAFTHSSYVNEHRIRPHDDNERLEFLGDAVLELAISQY 85 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF ++ + EGE++ ++V + +++A EL + + ++ ADV Sbjct: 86 LFKNYANMSEGEMTKLRAAIVCEPSLAKIADELKFGERVLLGKGEEMTGGRKRPALLADV 145 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKV 177 ES + ALYLD G++ F+ + D K++LQE + +YK+ Sbjct: 146 FESFVGALYLDLGMDAVYDFLKVNVYPKIADGAFSDMMDYKSQLQELVQREGQGQIQYKI 205 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H F V + G SK+ AEQ+AA + L++ Sbjct: 206 VQERGPAHAREFVSEVWLENKLLGIGAGRSKKEAEQMAAQKALEK 250 >gi|153810622|ref|ZP_01963290.1| hypothetical protein RUMOBE_01006 [Ruminococcus obeum ATCC 29174] gi|149833018|gb|EDM88100.1| hypothetical protein RUMOBE_01006 [Ruminococcus obeum ATCC 29174] Length = 223 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 77/207 (37%), Positives = 109/207 (52%), Gaps = 5/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 LE+ IGY F N+ LL++ALTHSS ++ + ERLEFLGD +L L+ S L+ Sbjct: 2 EQLEQIIGYTFQNKKLLKQALTHSSYANEKKLGKLGCNERLEFLGDAVLELISSDFLYAK 61 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGEL+ + SLV + + AR+ L ++ + SI +D E+L Sbjct: 62 FTQVPEGELTKKRASLVCEPSLAYCARQFGLPQYLLLGKGENMTGGRNRDSIVSDATEAL 121 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + A+YLDGG E A FV K+ + D+KT LQE K EY +T SG Sbjct: 122 LGAIYLDGGFEPAKDFVLKFILNDIEHK-QLFYDSKTILQEIVQEKGIQPVEYILTGESG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDHD +FTV V+++G G +K+ Sbjct: 181 PDHDKQFTVSVQVNGQVVGNGTGHTKK 207 >gi|113971183|ref|YP_734976.1| ribonuclease III [Shewanella sp. MR-4] gi|122943634|sp|Q0HG98|RNC_SHESM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|113885867|gb|ABI39919.1| RNAse III [Shewanella sp. MR-4] Length = 226 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + L + +GY F N LL +ALTH S ++ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNLPRLCRTLGYEFKNIELLTQALTHRSAAN---KHNERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV +T + +A+ L ++ + K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVRGDTLTLIAKAFKLGDYLFLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD +EV + ++ +R + ++DAKT LQE+ P+Y+V Sbjct: 118 EAIIGAIYLDSDLEVCRKLLLHWYAERLAEIQPGVNQKDAKTLLQEYLQGLKKPLPDYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 G HD FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 178 INIEGDAHDQTFTVECRIDDLSESVIGVASSRRKAEQIAAAQVLELLK 225 >gi|117921465|ref|YP_870657.1| ribonuclease III [Shewanella sp. ANA-3] gi|189043353|sp|A0KZN2|RNC_SHESA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|117613797|gb|ABK49251.1| RNAse III [Shewanella sp. ANA-3] Length = 226 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + L + +GY F N LL +ALTH S ++ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNLPRLCRTLGYEFKNIDLLTQALTHRSAAN---KHNERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV +T + +A+ L ++ + K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVRGDTLTLIAKAFKLGDYLFLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD +EV + ++ +R + ++DAKT LQE+ P+Y+V Sbjct: 118 EAIIGAIYLDSDLEVCRKLLLHWYAERLAEIQPGVNQKDAKTLLQEYLQGLKKPLPDYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 G HD FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 178 INIEGDAHDQTFTVECRIDDLSESVIGVASSRRKAEQIAAAQVLELLK 225 >gi|253578969|ref|ZP_04856240.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849912|gb|EES77871.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 227 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 75/213 (35%), Positives = 105/213 (49%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ + LE+ IGY F N+ L +ALTHSS ++ + S ERLEFLGD +L L+ S Sbjct: 1 MNR-KTEELEEIIGYHFKNKHYLTQALTHSSYANEKKLGKLGSNERLEFLGDAVLELISS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ F EGEL+ + SLV + + ARE L F+ + SI + Sbjct: 60 DYLYARFTQIPEGELTKKRASLVCEPSLAYCAREFGLPQFLLLGKGEDMTGGRNRDSIVS 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E+L+ A+YLDGG A FV + + D+KT LQE EY Sbjct: 120 DATEALLGAIYLDGGFANAKEFVLNFILNDIEHK-QLFYDSKTILQEIVQENGTQPVEYI 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +T GPDH+ FTV ++G QG +K+ Sbjct: 179 LTKEEGPDHNKNFTVEARVNGKVMGQGSGHTKK 211 >gi|160915457|ref|ZP_02077668.1| hypothetical protein EUBDOL_01465 [Eubacterium dolichum DSM 3991] gi|158432577|gb|EDP10866.1| hypothetical protein EUBDOL_01465 [Eubacterium dolichum DSM 3991] Length = 227 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLIST 57 M + + L++R G N+ + +ALTHSS + ++ S ERLEF+GD +L L + Sbjct: 1 MDTI-FEWLKQR-GIQIENKERMVEALTHSSYVNEHKASKHDNERLEFMGDAVLQLWSTR 58 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF+ + EG+++ LV E + R L ++ + K S+ AD Sbjct: 59 KLFHLTPALSEGQMTTLRAQLVCEEALAAYNRTLGWGKYLLLGVGEEKTGGRNRDSLLAD 118 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + E+++ A+YLD G+E ++ + D KT+LQE+ A Y+ Sbjct: 119 MFEAVLGAIYLDQGMEAVDIILESVLTPAITQPKSESVIDYKTKLQEYIQADTRKNVHYE 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + SGP + P F V+V++ + +G+ SK+ AEQ+AA + ++ Sbjct: 179 LVSTSGPSNAPIFEVIVKLEDIIMGKGVGNSKKRAEQMAAKDAFEKM 225 >gi|145630695|ref|ZP_01786474.1| ribonuclease III [Haemophilus influenzae R3021] gi|145641851|ref|ZP_01797426.1| ribonuclease III [Haemophilus influenzae R3021] gi|144983821|gb|EDJ91271.1| ribonuclease III [Haemophilus influenzae R3021] gi|145273473|gb|EDK13344.1| ribonuclease III [Haemophilus influenzae 22.4-21] Length = 227 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 121/231 (52%), Gaps = 11/231 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L LE++IGY F + +LL++ALTH S + + ERLEFLGD IL I+ L+ Sbjct: 1 MNHLD--RLERKIGYRFNDIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ +L ++ + S K+ SI AD VE Sbjct: 56 HQFPRCNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD G+ V + +++Q +K G ++DAKT LQE+ K P Y+V Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVV 175 Query: 179 FRSGPDHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G H FTV ++ S+R AEQ AA ++LK I Sbjct: 176 NIQGEAHCQIFTVECKVKSAEKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226 >gi|111115536|ref|YP_710154.1| ribonuclease III [Borrelia afzelii PKo] gi|123341290|sp|Q0SMF0|RNC_BORAP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|110890810|gb|ABH01978.1| ribonuclease III [Borrelia afzelii PKo] Length = 245 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59 + S + + F N LL AL+HSS S+ ++ ERLEFLGD +L L+I+ L Sbjct: 15 KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKSDNNERLEFLGDSVLNLIITDHL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EGELS + +VS ++ S +ARE+DL S+I + + I AD + Sbjct: 75 YKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134 Query: 120 ESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + A+YLD G +A FV R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 135 EAFVGAIYLDSGFLIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPNYKL 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V + + + G SK+ AE AA LK Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240 >gi|224542836|ref|ZP_03683375.1| hypothetical protein CATMIT_02028 [Catenibacterium mitsuokai DSM 15897] gi|224524248|gb|EEF93353.1| hypothetical protein CATMIT_02028 [Catenibacterium mitsuokai DSM 15897] Length = 230 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 5/225 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60 ++ ++ F L ++A THSS ++ YERLEF+GD +L L +S +F Sbjct: 1 MKILDFLQKENIPFKRIGLYKEAFTHSSYANESNAHIPDYERLEFMGDAVLQLFVSEFIF 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 KEG+L+ + LV E+ ++ + EL L + + K S+ A++ E Sbjct: 61 ALHPEYKEGQLTQLRSKLVREESLARFSEELHLGELLYLGVGEEKSGGRHRESVLANIYE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 S I ALYLD G E ++K + D KT+LQE + T Y V Sbjct: 121 SFIGALYLDCGKEQVIRILEKTIFKHVNEVNEFDDITDYKTKLQELVQSDDRKTVSYHVK 180 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP + P F + V + + G SK+ AEQ AA + L + Sbjct: 181 SSTGPANAPEFVIEVILDDMILGTGKGTSKKRAEQHAAKDALMKM 225 >gi|125624543|ref|YP_001033026.1| ribonuclease III [Lactococcus lactis subsp. cremoris MG1363] gi|189043323|sp|A2RLZ8|RNC_LACLM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|124493351|emb|CAL98325.1| ribonuclease III [Lactococcus lactis subsp. cremoris MG1363] gi|300071337|gb|ADJ60737.1| ribonuclease III [Lactococcus lactis subsp. cremoris NZ9000] Length = 231 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 103/223 (46%), Gaps = 9/223 (4%) Query: 8 TLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 L+K++ G F + LL+ A THSS ++ + + ERLEFLGD L L+IS L Sbjct: 3 KLQKKLKNDYGLVFNDEYLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYL 62 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EGELS +S+V E+ + +R F+R+ K + ++ Sbjct: 63 YRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLF 122 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+ + AL++D G++ F+ D KTELQE T YK+ Sbjct: 123 EAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVIDYKTELQEVLQIGGETTISYKIL 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP HD F V +G +G+ SK+ AEQ AA +K Sbjct: 183 KEEGPAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225 >gi|313892546|ref|ZP_07826133.1| ribonuclease III [Dialister microaerophilus UPII 345-E] gi|313118943|gb|EFR42148.1| ribonuclease III [Dialister microaerophilus UPII 345-E] Length = 239 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 111/232 (47%), Gaps = 9/232 (3%) Query: 1 MSALRYSTLEKRIG---YAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGL 53 M R LE+ I N LL ALTH+S ++ ++++ ERLEFLGD +L L Sbjct: 1 MHKNRIKELEEFIKENEIPIKNHELLNIALTHTSYANEHKKNKEHDNERLEFLGDAVLDL 60 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 ++ LF + EGEL+ S V C++++ L++ ++ + K S Sbjct: 61 IVGEYLFRKYPLWSEGELTKAKASAVCKPACAEISTRLNVGKYLLLGKGEEKSGGRTRVS 120 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGV 171 I D ESLI A+YLD G EV FV K+ ++ G + +D KT+LQE V Sbjct: 121 ILGDAFESLIGAIYLDIGYEVTFDFVIKHLEKFLDLIMQGDYDKDYKTDLQEILQQNGDV 180 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y V GPDHD + V G G+ SK+ A Q AA E ++R Sbjct: 181 EICYNVIHDEGPDHDKTIWMSVTADGKYLGSGIGKSKKQAAQRAAKEAIERI 232 >gi|303233301|ref|ZP_07319972.1| ribonuclease III [Atopobium vaginae PB189-T1-4] gi|302480601|gb|EFL43690.1| ribonuclease III [Atopobium vaginae PB189-T1-4] Length = 229 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 112/222 (50%), Gaps = 3/222 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 R +++ + Y F++ +L + ALTH S SYERLEFLGD ILG +I+ +F Sbjct: 6 RVCRVQEILDYTFSDITLAKAALTHPSAVEGQPVSASYERLEFLGDSILGAIIACDMFEQ 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ SLVS +T SQVA EL +A I R M S +V E+L Sbjct: 66 FPDMDEGALTRMKTSLVSGQTLSQVADELGIAPLIVFGESERGTGTRGMHSALENVYEAL 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A+YLDGG + F+ + + + K+ELQE++ + P Y++ S Sbjct: 126 VGAMYLDGGYDPTAAFIRRTLAEYMVPQRAAHPISPKSELQEFSQRIYHEMPVYELEEES 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H P FT V ++G +G SK+ ++ AA L + Sbjct: 186 GPAHLPHFTTAVYVNGELVGRGSGTSKKESQTQAAQAALDKL 227 >gi|224532223|ref|ZP_03672855.1| ribonuclease III [Borrelia valaisiana VS116] gi|224511688|gb|EEF82094.1| ribonuclease III [Borrelia valaisiana VS116] Length = 245 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 116/226 (51%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59 + S + + F N LL AL+HSS S+ + + ERLEFLGD +L L+I+ L Sbjct: 15 KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKSGNNERLEFLGDSVLNLIITDHL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EGELS + +VS ++ S +ARE+DL S+I + + I AD + Sbjct: 75 YKTYPNKSEGELSKARSYIVSEDSLSNIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134 Query: 120 ESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + A+YLD G VA FV R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 135 EAFVGAIYLDSGFSVATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYIQKKYKISPSYKL 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V + + + G SK+ AE AA LK Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240 >gi|224534577|ref|ZP_03675153.1| ribonuclease III [Borrelia spielmanii A14S] gi|224514254|gb|EEF84572.1| ribonuclease III [Borrelia spielmanii A14S] Length = 245 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59 + S + + F N LL AL+HSS S+ + + ERLEFLGD +L L+I+ L Sbjct: 15 KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKSGNNERLEFLGDSVLNLIITDHL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EGELS + +VS ++ S +ARE+DL S+I + + I AD + Sbjct: 75 YKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134 Query: 120 ESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + A+YLD G +A FV R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 135 EAFVGAIYLDSGFSIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V + + + G SK+ AE AA LK Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240 >gi|28378329|ref|NP_785221.1| ribonuclease III [Lactobacillus plantarum WCFS1] gi|254556537|ref|YP_003062954.1| ribonuclease III [Lactobacillus plantarum JDM1] gi|300767266|ref|ZP_07077178.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180480|ref|YP_003924608.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258332|sp|Q88WK0|RNC_LACPL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28271164|emb|CAD64069.1| ribonuclease III [Lactobacillus plantarum WCFS1] gi|254045464|gb|ACT62257.1| ribonuclease III [Lactobacillus plantarum JDM1] gi|300495085|gb|EFK30241.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045971|gb|ADN98514.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ST-III] Length = 231 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64 L++R G F + LL +A T +S + +Q+ YER+EFLGD +L L++S L+ + Sbjct: 9 LKERFGIVFNDPDLLAEAFTQASYVNEHQDQQLKYYERVEFLGDAVLELVVSEYLYKRYK 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G+L+ ++V E+ + ARE D +IR+ +K S+ D+ ES + Sbjct: 69 DMPQGKLTRLRAAMVCEESFASFARECDFPQYIRLGKGEQKAHAWERDSLLCDIFESFVG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ALYLD G E FV + + D KT LQE+ V +Y++ + GP Sbjct: 129 ALYLDQGREPVLKFVHQVIFPKLDEGRFDGVFDYKTTLQEYLQRDGDVAIDYQLIEQDGP 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ + + V G +G SK+ AEQ AA + + Sbjct: 189 ANERSYEIAVLADGQKIGEGWGHSKKEAEQSAARQAYSQL 228 >gi|229918600|ref|YP_002887246.1| ribonuclease III [Exiguobacterium sp. AT1b] gi|229470029|gb|ACQ71801.1| ribonuclease III [Exiguobacterium sp. AT1b] Length = 259 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 4/219 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62 + +LE+R+ F+N LL +A THSS + + + ERLEFLGD +L L +S L+ Sbjct: 31 FKSLEERLDVQFSNHDLLMQAFTHSSYVNEQRGLRKDNERLEFLGDAVLELTVSRFLYET 90 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EGEL+ ++V + A + FI + ++ ADV ES Sbjct: 91 YPERSEGELTKLRAAIVCEPSLVNFAEAFAFSDFILLGKGEELTGGRKRPALLADVFESY 150 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 I ALYLD GIE F+ + + + + D K++LQE + Y++ Sbjct: 151 IGALYLDQGIEAVERFLAEAVFPKVLAGVFEEQTDFKSQLQESVQREGLGPVSYEIIEER 210 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H F +S +G+ SK+ AEQ+AA E L Sbjct: 211 GPAHSREFVAHARLSDDIVGEGVGRSKKEAEQLAAKEAL 249 >gi|90101637|sp|Q3IDL2|RNC_PSEHT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 225 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 114/226 (50%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + L K I Y FA++ LLE+A+TH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MKK-NVTELYKTIDYIFADQGLLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANALY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+EG+LS ++LV +T ++ E L ++R+ K S AD VE Sbjct: 57 AKFPKAREGDLSRMRSTLVRGQTLAEFGLEFGLGDYLRLGPGELKSGGFRRESTLADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++LD IE G + ++++R ++D KT LQE A+ P Y V Sbjct: 117 AIIGAVFLDSDIERCGELILSWYEERLNAISPGLNQKDPKTLLQEHLQARKLSLPGYTVV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G H+ FTV + G+ + S+R AEQ AA + LK Sbjct: 177 DTKGQAHNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALKILK 222 >gi|161761286|ref|YP_033345.2| ribonuclease III [Bartonella henselae str. Houston-1] Length = 246 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 117/226 (51%), Positives = 155/226 (68%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LEK G+ F ++ L+KALTHSS+ S Q +YERLEFLGDR+LGLLI+ +L+ Sbjct: 12 MKLPMIDQLEKLTGHYFKDKKKLKKALTHSSVQGSEQGNYERLEFLGDRVLGLLIAEMLY 71 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELSVR NSLV+A+TC+ +A E++L I V +++ +T++ ADV+E Sbjct: 72 QLFPQASEGELSVRLNSLVNAQTCADIALEMELPVMIHVGFEMKNLKGRRLTNMYADVIE 131 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LIA +YLDGG+E F+ +YW+ RA + RRDAKT+LQEWAH + GV P Y+V R Sbjct: 132 ALIAVIYLDGGLESVRPFIQRYWQSRAKQMDAGRRDAKTQLQEWAHVQGGVQPHYRVVKR 191 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SGPDHDP F V V I G A G SKR AE++AA ++L+REGIW Sbjct: 192 SGPDHDPVFMVEVSIPGFASEIGQGNSKRCAERMAAEKILRREGIW 237 >gi|261211555|ref|ZP_05925843.1| ribonuclease III [Vibrio sp. RC341] gi|260839510|gb|EEX66136.1| ribonuclease III [Vibrio sp. RC341] Length = 221 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 112/220 (50%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + ERLEFLGD IL +I+ L+ F Sbjct: 2 NKLTSKLGYTFKETELLNLALTHRSA---NGKHNERLEFLGDSILSFVIADELYRRFPKV 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 59 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118 Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A + + +K G ++D KT LQE+ + P Y VT G Sbjct: 119 YLDSELETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 218 >gi|322514172|ref|ZP_08067237.1| ribonuclease III [Actinobacillus ureae ATCC 25976] gi|322119958|gb|EFX91960.1| ribonuclease III [Actinobacillus ureae ATCC 25976] Length = 222 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 6/224 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L+K++ Y F + L +ALTH S ++ ERLEFLGD IL I LF F Sbjct: 1 MHIERLQKKLDYKFISLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS +LV +T + +AR+ DL ++++ + K SI +D VE++I Sbjct: 58 PKANEGELSRMRATLVREQTLAILARQFDLGEYMKLGAGELKSGGYRRESILSDCVEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+YLD G++ A V +++ +K ++D KT LQE+ + P Y+V Sbjct: 118 AAIYLDSGMDNAIERVSVWYQDLLAEMKPSDAQKDPKTRLQEFLQGRKLKLPAYEVIDIK 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224 G H+ F V +I G+ S+R AEQ AA +VL + Sbjct: 178 GEAHNQTFKVTCKIETFDETFIGVGTSRRKAEQNAAEQVLVKLN 221 >gi|15895025|ref|NP_348374.1| ribonuclease III [Clostridium acetobutylicum ATCC 824] gi|22654069|sp|Q97IA4|RNC_CLOAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|15024717|gb|AAK79714.1|AE007684_2 DsRNA-specific ribonuclease III [Clostridium acetobutylicum ATCC 824] Length = 230 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 72/216 (33%), Positives = 105/216 (48%), Gaps = 4/216 (1%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 ++G F N +LL ALTHSS ++ + E ERLEFLGD +L L IS F + + EG Sbjct: 13 KLGIEFQNINLLVTALTHSSYANENKNAEYNERLEFLGDAVLQLSISEYFFKKYPTISEG 72 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 EL+ + +V + + L +IR+S SI AD VE++IAA+YLD Sbjct: 73 ELTKKRALVVCGMSLHSIGERWQLGKYIRMSHGEELTGGRTRVSIIADCVEAVIAAIYLD 132 Query: 130 GGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G + A F+ + ++ K D KT LQE +K +Y + GP H Sbjct: 133 KGFDTAKNFILREFEGTIQNAVENKIILDYKTRLQEILQSKGKTDIKYTLVRHEGPPHRR 192 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F V + + G +K+ AEQ AA + LK Sbjct: 193 KFFVNLNFDNDVKSTGEGYTKKDAEQDAACKALKGL 228 >gi|331701485|ref|YP_004398444.1| ribonuclease 3 [Lactobacillus buchneri NRRL B-30929] gi|329128828|gb|AEB73381.1| Ribonuclease 3 [Lactobacillus buchneri NRRL B-30929] Length = 236 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 5/219 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L++ G ++ LL++A T +S + ++ + YERLEFLGD +L L++S +F + Sbjct: 9 LKQDFGIHIDDQDLLDEAFTQASYVNEHRGEGLKFYERLEFLGDAVLQLIVSDYIFKRYP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G L+ ++V+ ++ S ARE +IR+ K S+ D+ ES + Sbjct: 69 KMPQGRLTRLRAAMVNEQSFSTFARECHFNQYIRLGKGEEKAGARDRDSLLCDIFESFVG 128 Query: 125 ALY-LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 LY G EV + + D KTELQE A A V +Y++ GP Sbjct: 129 CLYLDQGQAEVTRFVTKVIFPKLDEGMFAEFFDHKTELQELAQADGPVAIDYELVDEYGP 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 D+D F V V I G G+ SK+ AEQ AA + L++ Sbjct: 189 DNDRSFKVNVSIDGKLYGVGIGHSKKGAEQKAAQQALEQ 227 >gi|257784655|ref|YP_003179872.1| ribonuclease III [Atopobium parvulum DSM 20469] gi|257473162|gb|ACV51281.1| ribonuclease III [Atopobium parvulum DSM 20469] Length = 243 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 115/224 (51%), Gaps = 3/224 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 R + E G+ F N+ L+E ALTH S SYERLEFLGD ILG +I+T LF Sbjct: 6 RVAAAEAICGHTFINKDLIEAALTHPSAVEGKPVSASYERLEFLGDSILGAIIATELFER 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG+L+ SLVS T S V+ L ++ I + + M S +V ES+ Sbjct: 66 YPDMDEGQLTRLKISLVSGHTLSIVSDTLGVSPLIVMGISEKGTGKRGMKSALENVYESI 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRS 181 + ALYLD G E FV + + R K+ LQE A+ TPEYK+ S Sbjct: 126 VGALYLDAGFEPTRDFVIRTLGPHISPTLAVRSVSPKSRLQEAVQAQGKATPEYKLIGES 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP H P FT VV + GL +G SK+AAE AA + L R G+ Sbjct: 186 GPAHTPTFTAVVFVDGLKVGRGQGPSKKAAESEAAQDALVRLGV 229 >gi|302338403|ref|YP_003803609.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293] gi|301635588|gb|ADK81015.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293] Length = 244 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNH 62 EK +G F L A +H S ++ ++ E+LEFLGD +LGL++S LF Sbjct: 17 LQLFEKHVGIRFRKLEFLNLAFSHRSFANEQGTNVDNNEKLEFLGDSVLGLVVSEYLFAL 76 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG+L+ + +VS ++ +++AR++ + ++I + +I AD +E++ Sbjct: 77 LPDKAEGDLARVKSFVVSEDSLAEIARKIKVDNYILIGKGEEYSGGRNKKAILADCMEAI 136 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I + YLD G + A +FV KY K + ++D KT LQE+ +F P Y + + Sbjct: 137 IGSFYLDSGFKAARSFVLKYLIPEINKVLENRHKKDYKTLLQEYVQKQFKSYPRYSLVKK 196 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GPDHD F + V+I G G +K+ AEQ AA ++ Sbjct: 197 TGPDHDRTFWIEVKIDGKVYGPGKGKNKKEAEQHAAGLAYRKL 239 >gi|114048421|ref|YP_738971.1| ribonuclease III [Shewanella sp. MR-7] gi|122944480|sp|Q0HSJ1|RNC_SHESR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|113889863|gb|ABI43914.1| RNAse III [Shewanella sp. MR-7] Length = 226 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + L + +GY F N LL +ALTH S ++ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNLPRLCRTLGYEFKNLELLTQALTHRSAAN---KHNERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV +T + +A+ L ++ + K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVRGDTLTLIAKAFKLGDYLFLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD +EV + ++ +R + ++DAKT LQE+ P+Y+V Sbjct: 118 EAIIGAIYLDSDLEVCRKLLLHWYAERLAEIQPGVNQKDAKTLLQEYLQGLKKPLPDYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 G HD FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 178 INIEGDAHDQTFTVECRIDDLSESVIGVASSRRKAEQIAAAQVLELLK 225 >gi|301168615|emb|CBW28205.1| RNase III [Haemophilus influenzae 10810] Length = 227 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 122/231 (52%), Gaps = 11/231 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L LE++IGY F + +LL++ALTH S + + ERLEFLGD IL I+ L+ Sbjct: 1 MNHLD--RLERKIGYCFNDITLLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ +L ++ + S K+ SI AD VE Sbjct: 56 HQFPRCNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD G+ V + +++Q +K G ++DAKT LQE+ K P Y+V Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVV 175 Query: 179 FRSGPDHDPRFTVVVEIS--GLA--PAQGMDCSKRAAEQVAAAEVLKREGI 225 G H FTV ++ G S+R AEQ AA ++LK I Sbjct: 176 NIQGEAHCQIFTVECKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226 >gi|68248565|ref|YP_247677.1| ribonuclease III [Haemophilus influenzae 86-028NP] gi|145629132|ref|ZP_01784931.1| ribonuclease III [Haemophilus influenzae 22.1-21] gi|145633429|ref|ZP_01789159.1| ribonuclease III [Haemophilus influenzae 3655] gi|145636782|ref|ZP_01792448.1| ribonuclease III [Haemophilus influenzae PittHH] gi|145639697|ref|ZP_01795300.1| ribonuclease III [Haemophilus influenzae PittII] gi|148825705|ref|YP_001290458.1| ribonuclease III [Haemophilus influenzae PittEE] gi|229846933|ref|ZP_04467039.1| ribonuclease III [Haemophilus influenzae 7P49H1] gi|260582072|ref|ZP_05849867.1| ribonuclease III [Haemophilus influenzae NT127] gi|81337008|sp|Q4QPN0|RNC_HAEI8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043319|sp|A5UBC4|RNC_HAEIE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|68056764|gb|AAX87017.1| ribonuclease III [Haemophilus influenzae 86-028NP] gi|144978635|gb|EDJ88358.1| ribonuclease III [Haemophilus influenzae 22.1-21] gi|144985992|gb|EDJ92594.1| ribonuclease III [Haemophilus influenzae 3655] gi|145270080|gb|EDK10017.1| ribonuclease III [Haemophilus influenzae PittHH] gi|145271254|gb|EDK11168.1| ribonuclease III [Haemophilus influenzae PittII] gi|148715865|gb|ABQ98075.1| ribonuclease III [Haemophilus influenzae PittEE] gi|229810017|gb|EEP45737.1| ribonuclease III [Haemophilus influenzae 7P49H1] gi|260094962|gb|EEW78855.1| ribonuclease III [Haemophilus influenzae NT127] gi|309750667|gb|ADO80651.1| RNase III, dsRNA [Haemophilus influenzae R2866] Length = 227 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 122/231 (52%), Gaps = 11/231 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L LE++IGY F + +LL++ALTH S + + ERLEFLGD IL I+ L+ Sbjct: 1 MNHLD--RLERKIGYCFNDIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ +L ++ + S K+ SI AD VE Sbjct: 56 HQFPRCNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD G+ V + +++Q +K G ++DAKT LQE+ K P Y+V Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVV 175 Query: 179 FRSGPDHDPRFTVVVEIS--GLA--PAQGMDCSKRAAEQVAAAEVLKREGI 225 G H FTV ++ G S+R AEQ AA ++LK I Sbjct: 176 NIQGEAHCQIFTVECKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226 >gi|325509162|gb|ADZ20798.1| ribonuclease III [Clostridium acetobutylicum EA 2018] Length = 230 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 72/216 (33%), Positives = 105/216 (48%), Gaps = 4/216 (1%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 ++G F N +LL ALTHSS ++ + E ERLEFLGD +L L IS F + + EG Sbjct: 13 KLGIEFQNINLLVTALTHSSYANENKNAEYNERLEFLGDAVLQLSISEYFFKKYPTISEG 72 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 EL+ + +V + + L +IR+S SI AD VE++IAA+YLD Sbjct: 73 ELTKKRALVVCGISLHSIGERWQLGKYIRMSHGEELTGGRTRVSIIADCVEAVIAAIYLD 132 Query: 130 GGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G + A F+ + ++ K D KT LQE +K +Y + GP H Sbjct: 133 KGFDTAKNFILREFEGTIQNAVENKIILDYKTRLQEILQSKGKTDIKYTLVRHEGPPHRR 192 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F V + + G +K+ AEQ AA + LK Sbjct: 193 KFFVNLNFDNDVKSTGEGYTKKDAEQDAACKALKGL 228 >gi|167037696|ref|YP_001665274.1| ribonuclease III [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|307264836|ref|ZP_07546398.1| ribonuclease III [Thermoanaerobacter wiegelii Rt8.B1] gi|320116111|ref|YP_004186270.1| ribonuclease III [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326389510|ref|ZP_08211077.1| ribonuclease III [Thermoanaerobacter ethanolicus JW 200] gi|166856530|gb|ABY94938.1| Ribonuclease III [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|306920094|gb|EFN50306.1| ribonuclease III [Thermoanaerobacter wiegelii Rt8.B1] gi|319929202|gb|ADV79887.1| ribonuclease III [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325994515|gb|EGD52940.1| ribonuclease III [Thermoanaerobacter ethanolicus JW 200] Length = 246 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 75/214 (35%), Positives = 115/214 (53%), Gaps = 5/214 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTL 58 S LEKRI Y+F +++LL +ALTHSS +H + S ERLEFLGD +L L+IS Sbjct: 16 KRENLSELEKRINYSFKDKNLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEY 75 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + +EG LS +V + ++ ARE++L +F+R+ SI AD Sbjct: 76 LYKNRKDLEEGSLSKYRAEIVCEPSLARCAREIELGNFLRIGKGEELTGGRERDSILADA 135 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYK 176 +E+++AA+YLDGG+EV + + +K + + RD KT+LQE + Y+ Sbjct: 136 MEAILAAVYLDGGLEVVRNVILELFKNIIEEVLEGLIYRDYKTKLQEVVQSMEIGKIIYE 195 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + GPDH+ F V I + +G SK+ Sbjct: 196 LIEEMGPDHNKTFVTQVRIGDVILGKGYGKSKKE 229 >gi|15603994|ref|NP_220509.1| ribonuclease III [Rickettsia prowazekii str. Madrid E] gi|6226018|sp|Q9ZE31|RNC_RICPR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|3860685|emb|CAA14586.1| RIBONUCLEASE III (rnc) [Rickettsia prowazekii] Length = 225 Score = 141 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 116/228 (50%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSS----ISHSYQESYERLEFLGDRILGLLIS 56 M + + LE +GY+F N+ LL +AL+H S + Y + YERLEFLGD +L LLI+ Sbjct: 1 MES--FEKLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLIT 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +LF +F++ KEG L+ + LV ET V +L L +I ++ + Sbjct: 59 EILFKNFENYKEGNLAKIRSYLVCKETICIVGTKLALKDYIIMTHGEEVAGGRDNPNNIE 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + E+LIAA+YLD IE+ ++K W + D KT LQEWA A P Y+ Sbjct: 119 NATEALIAAIYLDSNIEITHNIIEKLWAEFMKVQNLTDYDPKTALQEWAQANSHHLPIYR 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + R G H FTV+V++ S + AE+ AA +L R Sbjct: 179 LIKREGAAHSSIFTVLVKVKDYEQTC-TGYSIKEAEKKAARSLLHRLK 225 >gi|85712960|ref|ZP_01043999.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina baltica OS145] gi|85693198|gb|EAQ31157.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina baltica OS145] Length = 228 Score = 141 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 118/221 (53%), Gaps = 6/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + LE+ IGY F +SLL++ALTH S + ERLEFLGD ILG++I+ LF+ F Sbjct: 8 LTQLEQIIGYRFERQSLLKQALTHRSA---HANHNERLEFLGDSILGVVIAEALFSRFPK 64 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS ++V + +++ ++ L ++ + K SI AD +E++I A Sbjct: 65 VAEGDLSRMRAAIVCGRSLARLGKKKGLGDYLSLGQGELKSGGYRRESILADAMEAIIGA 124 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ++LD ++ V +++++ ++D KT LQEW A+ PEY V G Sbjct: 125 IFLDSDMDTVKQVVLGWFEEQLETIKPGASQKDPKTRLQEWLQARQRPLPEYDVVATQGQ 184 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ +FTV I GL P G S+R AEQ AA L++ Sbjct: 185 AHNQQFTVTCTIEGLPEPLLGTGTSRRKAEQAAATSALEQL 225 >gi|289578474|ref|YP_003477101.1| ribonuclease III [Thermoanaerobacter italicus Ab9] gi|297544750|ref|YP_003677052.1| ribonuclease III [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528187|gb|ADD02539.1| ribonuclease III [Thermoanaerobacter italicus Ab9] gi|296842525|gb|ADH61041.1| ribonuclease III [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 246 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 74/214 (34%), Positives = 112/214 (52%), Gaps = 5/214 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTL 58 S LEK+I Y+F N+ LL +ALTHSS +H + S ERLEFLGD +L L+IS Sbjct: 16 KRKNLSELEKKINYSFKNKDLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEY 75 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + +EG LS +V + ++ ARE+ L +F+ + S+ AD Sbjct: 76 LYKNRKDLEEGSLSKYRAEIVCEPSLARCAREIGLGNFLLIGKGEEMTGGRERDSLLADA 135 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYK 176 +E+L+AA+YLDGG+EV + ++ + + RD KT+LQE + Y+ Sbjct: 136 MEALLAAVYLDGGLEVVRNIILDLFRNIIEEVLEGLIYRDYKTKLQEVVQSMGIGKITYE 195 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + GPDH+ F V I +A +G SK+ Sbjct: 196 LVKEIGPDHNKTFITKVRIGDVALGEGYGKSKKE 229 >gi|157964181|ref|YP_001499005.1| ribonuclease III [Rickettsia massiliae MTU5] gi|189043342|sp|A8F0M2|RNC_RICM5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157843957|gb|ABV84458.1| Ribonuclease III [Rickettsia massiliae MTU5] Length = 227 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 117/228 (51%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + + TLEK + Y+F N+ LL +AL+H S+ ++ + YERLEFLGD +L L+I+ Sbjct: 1 MES--FETLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVIT 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +LF +F + EG L+ + LV ET V +L L ++I ++ + Sbjct: 59 EILFRNFANYNEGHLAKIRSYLVCKETICMVGAKLTLKNYIIMTHGEEVAGGRDNLNNIE 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + E+LIAA+YLD IE ++K W + D KT LQEWA A P Y+ Sbjct: 119 NATEALIAAIYLDSNIETTYDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYR 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + R G H FTV+V++ G + + AE+ AA +L R Sbjct: 179 LIKREGASHSSTFTVLVKVKDYEQ-TGTGHAIKEAEKNAARSLLHRLK 225 >gi|298528053|ref|ZP_07015457.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1] gi|298511705|gb|EFI35607.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1] Length = 232 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64 L+ +IGY + + LL +ALTHSS ++ + E ERLEFLGD +L L IS +LF F Sbjct: 2 LDELQDKIGYRYQDPELLVRALTHSSYANERHMEHNERLEFLGDAVLELCISNVLFFRFP 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG L+ +LVS T +++AR L L +I + S+ AD +E+++ Sbjct: 62 RAPEGHLTRLRAALVSEPTLARLARSLTLGDYIFLGRGEELQGGRDRDSVLADTLEAILG 121 Query: 125 ALYLDGGIEVAGTFV---DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G + A + + + +++ +D K+ LQE F P Y + Sbjct: 122 AVYLDSGYDGAFECIAALFEDFIPDRVEALPVSKDFKSRLQEKTQGLFRARPVYTLIDSY 181 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP+H+ + V VE+ + M S + AEQ AA++ L+ Sbjct: 182 GPEHEKIYRVQVELPDGTGIEAMAGSVKKAEQKAASKALEYL 223 >gi|148265180|ref|YP_001231886.1| ribonuclease III [Geobacter uraniireducens Rf4] gi|146398680|gb|ABQ27313.1| RNAse III [Geobacter uraniireducens Rf4] Length = 240 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + LE I Y FA+RSLL +ALTH S + + +RLEF GD ++ L+S +L Sbjct: 9 LAGLESAINYHFADRSLLTEALTHRSFVNESGGKWTKDNQRLEFFGDAVIDFLLSRMLLE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F ++EG L+ SLV + + +A E+ L +F+++ + S+ AD E+ Sbjct: 69 RFPDSREGALTKIRASLVDEGSLASLAEEIGLGAFLKLGRGEERSGGRRKRSLLADAYEA 128 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+AA+YLDGGIE V+ ++ + RD KTE QE AHA G P Y + Sbjct: 129 LMAAVYLDGGIEPVQRLVEAHFARLMAGREVLSAGRDYKTEFQELAHALRGSMPRYVLRG 188 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH+ FTV + I +G SK+ AEQ AA E + R Sbjct: 189 ISGPDHERSFTVALFIGDERMGEGAGRSKKEAEQAAAREGIARL 232 >gi|238650709|ref|YP_002916562.1| ribonuclease III [Rickettsia peacockii str. Rustic] gi|259646552|sp|C4K1R3|RNC_RICPU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238624807|gb|ACR47513.1| ribonuclease III [Rickettsia peacockii str. Rustic] Length = 227 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 116/228 (50%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + + LEK + Y+F N+ LL +AL+H S+ ++ + YERLEFLGD +L L+I+ Sbjct: 1 MES--FEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVIT 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +LF +F + EG L+ + LV ET V +L L ++I ++ + Sbjct: 59 EILFRNFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYIIMTHGEEVAGGRDNLNNIE 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + E+LIAA+YLD IE ++K W + D KT LQEWA A P Y+ Sbjct: 119 NATEALIAAIYLDSNIETTHDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYR 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + R G H FTV+V++ G + + AE+ AA +L R Sbjct: 179 LIKREGASHASTFTVLVKVKDYEQ-TGTGHAIKEAEKNAARSLLHRLK 225 >gi|121728984|ref|ZP_01681988.1| ribonuclease III [Vibrio cholerae V52] gi|147674970|ref|YP_001217963.1| ribonuclease III [Vibrio cholerae O395] gi|153214513|ref|ZP_01949422.1| ribonuclease III [Vibrio cholerae 1587] gi|153803086|ref|ZP_01957672.1| ribonuclease III [Vibrio cholerae MZO-3] gi|153826905|ref|ZP_01979572.1| ribonuclease III [Vibrio cholerae MZO-2] gi|153830879|ref|ZP_01983546.1| ribonuclease III [Vibrio cholerae 623-39] gi|229514087|ref|ZP_04403549.1| ribonuclease III [Vibrio cholerae TMA 21] gi|229521288|ref|ZP_04410708.1| ribonuclease III [Vibrio cholerae TM 11079-80] gi|229524448|ref|ZP_04413853.1| ribonuclease III [Vibrio cholerae bv. albensis VL426] gi|229527069|ref|ZP_04416464.1| ribonuclease III [Vibrio cholerae 12129(1)] gi|254226246|ref|ZP_04919839.1| ribonuclease III [Vibrio cholerae V51] gi|254291661|ref|ZP_04962449.1| ribonuclease III [Vibrio cholerae AM-19226] gi|297581085|ref|ZP_06943010.1| ribonuclease III [Vibrio cholerae RC385] gi|189043374|sp|A5F5H8|RNC_VIBC3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|121628750|gb|EAX61217.1| ribonuclease III [Vibrio cholerae V52] gi|124115315|gb|EAY34135.1| ribonuclease III [Vibrio cholerae 1587] gi|124121368|gb|EAY40111.1| ribonuclease III [Vibrio cholerae MZO-3] gi|125621219|gb|EAZ49560.1| ribonuclease III [Vibrio cholerae V51] gi|146316853|gb|ABQ21392.1| ribonuclease III [Vibrio cholerae O395] gi|148873648|gb|EDL71783.1| ribonuclease III [Vibrio cholerae 623-39] gi|149739268|gb|EDM53530.1| ribonuclease III [Vibrio cholerae MZO-2] gi|150422433|gb|EDN14392.1| ribonuclease III [Vibrio cholerae AM-19226] gi|227014353|gb|ACP10563.1| ribonuclease III [Vibrio cholerae O395] gi|229335466|gb|EEO00948.1| ribonuclease III [Vibrio cholerae 12129(1)] gi|229338029|gb|EEO03046.1| ribonuclease III [Vibrio cholerae bv. albensis VL426] gi|229341820|gb|EEO06822.1| ribonuclease III [Vibrio cholerae TM 11079-80] gi|229349268|gb|EEO14225.1| ribonuclease III [Vibrio cholerae TMA 21] gi|297534911|gb|EFH73747.1| ribonuclease III [Vibrio cholerae RC385] Length = 225 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 111/220 (50%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + ERLEFLGD IL +I+ L+ F Sbjct: 6 NKLTSKLGYTFKETELLNLALTHRSA---NGKHNERLEFLGDSILSFVIADELYRRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A + +K G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSDLETARRIVLEWYQCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222 >gi|262167292|ref|ZP_06035002.1| ribonuclease III [Vibrio cholerae RC27] gi|262190709|ref|ZP_06048940.1| ribonuclease III [Vibrio cholerae CT 5369-93] gi|262024267|gb|EEY42958.1| ribonuclease III [Vibrio cholerae RC27] gi|262033421|gb|EEY51928.1| ribonuclease III [Vibrio cholerae CT 5369-93] gi|327484953|gb|AEA79360.1| Ribonuclease III [Vibrio cholerae LMA3894-4] Length = 221 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 111/220 (50%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + ERLEFLGD IL +I+ L+ F Sbjct: 2 NKLTSKLGYTFKETELLNLALTHRSA---NGKHNERLEFLGDSILSFVIADELYRRFPKV 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 59 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118 Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A + +K G ++D KT LQE+ + P Y VT G Sbjct: 119 YLDSDLETARRIVLEWYQCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 218 >gi|300087535|ref|YP_003758057.1| ribonuclease III [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527268|gb|ADJ25736.1| ribonuclease III [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 234 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 112/223 (50%), Gaps = 6/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 Y ++ R+G FAN ++LE AL HSS + + ERLEFLGD +LG+ I+ LF Sbjct: 3 DYEEIQARLGVRFANPAILETALIHSSFVNETADQSISHNERLEFLGDAVLGMWIAERLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG L+ + LV ET + +A EL L + + + + + +E Sbjct: 63 RDFPDEPEGTLTRYRSLLVRRETLAFIADELQLGEALYLGRGEIRSGGRRKPANLSRALE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD G + G +D+ +++ D+K+ LQE ++ PEY++ Sbjct: 123 AVIAAVYLDRGYDTTGQVIDRLFERHFADLPGMAAAADSKSHLQEIVQGRYHTPPEYRII 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +GPD+ FT V ++G G K+ AE AA E L+ Sbjct: 183 EENGPDNAQSFTAEVIVNGQVRGTGRGSRKKDAETAAAQEALE 225 >gi|317058970|ref|ZP_07923455.1| ribonuclease III [Fusobacterium sp. 3_1_5R] gi|313684646|gb|EFS21481.1| ribonuclease III [Fusobacterium sp. 3_1_5R] Length = 235 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 9/233 (3%) Query: 1 MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLL 54 MS++ LE RI Y F +++LL+ AL H S + ++ + E+LE LGD +LGL+ Sbjct: 1 MSSVSKNLVDLEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLV 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ++ L+ + KEG L+ + VS + ++R+L + ++ +S SI Sbjct: 61 VAEYLYQKYPEEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSI 120 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVT 172 DV E+++ A+YLD G A +V + K F D KT LQE+ K+ Sbjct: 121 LGDVFEAILGAIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDI 180 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P+Y + GPDH F + V+I A+ +K+ AEQ+AA ++ K G+ Sbjct: 181 PKYTLVGEEGPDHRKLFEMQVQIQNN-IAKAKGTNKKIAEQMAAKQLCKELGV 232 >gi|262404774|ref|ZP_06081329.1| ribonuclease III [Vibrio sp. RC586] gi|262349806|gb|EEY98944.1| ribonuclease III [Vibrio sp. RC586] Length = 225 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + ERLEFLGD IL +I+ L+ F Sbjct: 6 NKLTSKLGYTFKEIELLNLALTHRSA---NGKHNERLEFLGDSILSFVIADELYRRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A + + + +K G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222 >gi|222151066|ref|YP_002560220.1| ribonuclease III [Macrococcus caseolyticus JCSC5402] gi|222120189|dbj|BAH17524.1| ribonuclease III [Macrococcus caseolyticus JCSC5402] Length = 242 Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 5/223 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 ++ + + + + L +A +HSS + ++ + ERLEFLGD +L L++S Sbjct: 12 KVKLNKVLTHLDIIPNDIELYVQAFSHSSFINDFKLDKNKDNERLEFLGDAVLELMVSQY 71 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ EG L+ ++V + A+ L I + K S+ ADV Sbjct: 72 LYQQHRDLPEGRLTKLRAAIVCEPSLVTFAKMLKFDQLILLGKGEEKTGGRTRPSLIADV 131 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + ALYLD G +V F + Y + D KT LQE+ H + Y++ Sbjct: 132 FEAFVGALYLDQGHDVTKRFFNSYIFPAITEDLLHGLIDYKTCLQEYIHKTKNLQVTYRL 191 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H FT V + G +K+ +EQ AA L Sbjct: 192 VKEEGPAHFKAFTSEVYVEDKVIGTGTGRTKKESEQQAAQTAL 234 >gi|292571710|gb|ADE29625.1| Ribonuclease III [Rickettsia prowazekii Rp22] Length = 225 Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 116/228 (50%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSS----ISHSYQESYERLEFLGDRILGLLIS 56 M + + LE +GY+F N+ LL +AL+H S + Y + YERLEFLGD +L LLI+ Sbjct: 1 MES--FEKLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLIT 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +LF +F++ KEG L+ + LV ET V +L L +I ++ + Sbjct: 59 EILFKNFENYKEGNLAKIRSYLVCKETICIVGTKLALKDYIIMTHGEEVAGGRDNPNNIE 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + E+LIAA+YLD IE+ ++K W + D KT LQEWA A P Y+ Sbjct: 119 NATEALIAAIYLDSNIEITHNIIEKLWAEFMKVQNFTDYDPKTALQEWAQANSHHLPIYR 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + R G H FTV+V++ S + AE+ AA +L R Sbjct: 179 LIKREGAAHSSIFTVLVKVKDYEQTC-TGYSIKEAEKKAARSLLHRLK 225 >gi|296185386|ref|ZP_06853796.1| ribonuclease III [Clostridium carboxidivorans P7] gi|296050220|gb|EFG89644.1| ribonuclease III [Clostridium carboxidivorans P7] Length = 240 Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 113/226 (50%), Gaps = 4/226 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLL 59 + LE+++ F ++ LL+ ALTHSS ++ + ERLEFLGD +L + IS L Sbjct: 10 KNDTFVELEQKLDVCFEDKELLKIALTHSSYANGKKNIKFNERLEFLGDSVLQISISEYL 69 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F ++ EGEL+ R +V + ++A++ DL +IR+S SI AD V Sbjct: 70 FLNYSKKTEGELTKRRALIVCENSLYEIAKKWDLGKYIRMSKGEELTGGRERVSILADCV 129 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++IAA+Y+D G E A FV +K K D KT+LQE V +Y + Sbjct: 130 EAIIAAIYIDAGFEKAKGFVLTNFKDTIEKAIKNKIILDYKTKLQEVMQKNGDVDIQYDL 189 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V ++ G SK+ +EQ AA + LK Sbjct: 190 MKYEGPPHRRKFYTQVSVNNKVLGNGTGYSKKESEQSAAKKALKGL 235 >gi|34580889|ref|ZP_00142369.1| ribonuclease III [Rickettsia sibirica 246] gi|157828029|ref|YP_001494271.1| ribonuclease III [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932727|ref|YP_001649516.1| ribonuclease III [Rickettsia rickettsii str. Iowa] gi|229586355|ref|YP_002844856.1| ribonuclease III [Rickettsia africae ESF-5] gi|166991034|sp|A8GQT8|RNC_RICRS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043343|sp|B0BW84|RNC_RICRO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|259646551|sp|C3PMF3|RNC_RICAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28262274|gb|EAA25778.1| ribonuclease III [Rickettsia sibirica 246] gi|157800510|gb|ABV75763.1| ribonuclease III [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907814|gb|ABY72110.1| ribonuclease III [Rickettsia rickettsii str. Iowa] gi|228021405|gb|ACP53113.1| Ribonuclease III [Rickettsia africae ESF-5] Length = 227 Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 116/228 (50%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + + LEK + Y+F N+ LL +AL+H S+ ++ + YERLEFLGD +L L+I+ Sbjct: 1 MES--FEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVIT 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +LF +F + EG L+ + LV ET V +L L ++I ++ + Sbjct: 59 EILFRNFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYIIMTHGEEVAGGRDNLNNIE 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + E+LIAA+YLD IE ++K W + D KT LQEWA A P Y+ Sbjct: 119 NATEALIAAIYLDSNIETTHDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYR 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + R G H FTV+V++ G + + AE+ AA +L R Sbjct: 179 LIKREGASHSSTFTVLVKVKDYEQ-TGTGHAIKEAEKNAARSLLHRLK 225 >gi|16271989|ref|NP_438187.1| ribonuclease III [Haemophilus influenzae Rd KW20] gi|260580682|ref|ZP_05848509.1| ribonuclease III [Haemophilus influenzae RdAW] gi|1173093|sp|P44441|RNC_HAEIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|1572958|gb|AAC21692.1| ribonuclease III (rnc) [Haemophilus influenzae Rd KW20] gi|260092744|gb|EEW76680.1| ribonuclease III [Haemophilus influenzae RdAW] Length = 227 Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 121/231 (52%), Gaps = 11/231 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L LE++IGY F + +LL++ALTH S + + ERLEFLGD IL I+ L+ Sbjct: 1 MNHLD--RLERKIGYRFNDIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ +L ++ + S K+ SI AD VE Sbjct: 56 HQFPRCNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD G+ V + +++Q +K G ++DAKT LQE+ K P Y+V Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVV 175 Query: 179 FRSGPDHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G H FTV ++ S+R AEQ AA ++LK I Sbjct: 176 NIQGEAHCQIFTVKCKVKSAEKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226 >gi|15924223|ref|NP_371757.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50] gi|156979554|ref|YP_001441813.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu3] gi|255006020|ref|ZP_05144621.2| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50-omega] gi|22654068|sp|Q931T1|RNC_STAAM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043357|sp|A7X1J9|RNC_STAA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|14247003|dbj|BAB57395.1| RNase III [Staphylococcus aureus subsp. aureus Mu50] gi|156721689|dbj|BAF78106.1| RNase III [Staphylococcus aureus subsp. aureus Mu3] Length = 243 Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 5/227 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 R+ T +G+ + N L ++A +HSS + + + ERLEFLGD +L L +S Sbjct: 14 RKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRY 73 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF+ + EG L+ ++V + A ++ L I + K S+ +D Sbjct: 74 LFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDA 133 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKV 177 E+ I ALYLD G+++ F +K ++ D KT+ QE+ H + Y + Sbjct: 134 FEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNL 193 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H FT V + G A A+G +K+ +EQ AA K+ Sbjct: 194 IKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAKSAYKQLK 240 >gi|260828679|ref|XP_002609290.1| hypothetical protein BRAFLDRAFT_86799 [Branchiostoma floridae] gi|229294646|gb|EEN65300.1| hypothetical protein BRAFLDRAFT_86799 [Branchiostoma floridae] Length = 1490 Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 9/227 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 R + E R G F + LL +A TH + ++ +RLEFLGD ++ ++ S L+ H Sbjct: 1198 RLTEFESRCGMEFKHVRLLARAFTHRTVGFNNLTLGHNQRLEFLGDSVMQMVSSEYLYKH 1257 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V+++L + +I S R+ S AD++E+ Sbjct: 1258 FPDHHEGHLSLLRSSLVNNRTQALVSQDLGMEEYIISSDKARQGKLSLRQKTLADLMEAF 1317 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 + ALY+D G+E F++ + R + D K++LQ+ K P Y Sbjct: 1318 MGALYVDQGLEYVCVFMNVCFFPRLREFIMNQEWNDPKSQLQQCCLTLRTEGKEPDIPFY 1377 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K+ ++GP H ++TV V G G+ S + AE AA + LK Sbjct: 1378 KILDKAGPSHARKYTVAVYFKGERIGTGVGSSIQQAEMAAARDALKN 1424 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 51/103 (49%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S+ L+ F +EG L+ ++V + + +A++L L F+ Sbjct: 1088 NHNERLEFLGDAVVEFLTSSHLYFMFPDLEEGGLATYRTAIVQNQHLAVLAKKLRLDEFM 1147 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + S + A+ +E+LI A+Y+ G+E Sbjct: 1148 LYAHGPDLCRESDLRHAMANCLEALIGAMYMQQGLEETKKLFC 1190 Score = 43.0 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 21/34 (61%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 + L++ +G F +RSLLE ALTH S ++ + Sbjct: 1001 LNELDQLLGSKFEDRSLLELALTHPSHHLNFGMN 1034 >gi|15643859|ref|NP_228908.1| ribonuclease III [Thermotoga maritima MSB8] gi|7531194|sp|Q9X0I6|RNC_THEMA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|4981647|gb|AAD36178.1|AE001769_8 ribonuclease III [Thermotoga maritima MSB8] Length = 240 Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 9/227 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58 +K G F N LL +AL HSS ++ ES E+LEFLGD +L L + + Sbjct: 9 VEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEI 68 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + A+ G+L+ ++ S E + V+R+++L F+ + K SI AD Sbjct: 69 LYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADA 128 Query: 119 VESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E+L+AA+YLD G E + + + G+ D KT LQE ++ V PEY Sbjct: 129 FEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYI 188 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + D D F V V ++G A G +K+ AE+ AA ++ Sbjct: 189 LVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL 235 >gi|317059911|ref|ZP_07924396.1| ribonuclease 3 [Fusobacterium sp. D12] gi|313685587|gb|EFS22422.1| ribonuclease 3 [Fusobacterium sp. D12] Length = 235 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 115/233 (49%), Gaps = 9/233 (3%) Query: 1 MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLL 54 MSA+ LE I Y F +++LL+ AL H S + ++ + ERLE LGD +LGL+ Sbjct: 1 MSAVGRNLVDLEHNINYYFNDKNLLKNALIHRSFGNEHRTYKNINNERLELLGDAVLGLV 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ++ L+ + KEG L+ + VS S V+R+L + ++ +S SI Sbjct: 61 VAEYLYQKYPKEKEGVLAKIKSMAVSEPVLSGVSRKLHIGDYLLLSKGEIVTGGRDRNSI 120 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVT 172 D E+++ A+YLD G A +V + K+ F D KT LQE KF Sbjct: 121 LGDAFEAILGAIYLDSGFFAAKEYVLFHLKEIIDHIDDFEEILDFKTILQEHCQKKFKEI 180 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P+Y + GPDH F + V+I A+ +K+ AEQ AA ++ K G+ Sbjct: 181 PKYTLLREEGPDHRKLFEMQVQIQDKV-ARAKGNNKKIAEQKAAKKLCKEMGV 232 >gi|284048724|ref|YP_003399063.1| ribonuclease III [Acidaminococcus fermentans DSM 20731] gi|283952945|gb|ADB47748.1| ribonuclease III [Acidaminococcus fermentans DSM 20731] Length = 234 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 106/233 (45%), Gaps = 10/233 (4%) Query: 1 MSALRYSTLE---KRIGYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILG 52 M R LE +++G + LL+ ALTH+S ++ +++ +RLEFLGD +L Sbjct: 1 MEEQRQKELEGLCRQLGMEMKDLHLLDMALTHTSYAYESKKNPRPQHNQRLEFLGDSVLS 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L++ST ++ EGELS LV ET +Q+A E L + + Sbjct: 61 LVVSTHIYKTCPQMDEGELSKLRAFLVCEETLAQLATENHLGDHLLLGKGEINLDGEENP 120 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFG 170 SI AD ES++ A YLD G +++ R + RD KT LQE Sbjct: 121 SILADAFESVLGAYYLDQGFARVTGLLNRLLISRIPELTADGIDRDYKTRLQEVVQKDGP 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y GP H+ F + V ++G +G +K+ AEQ AA E LK Sbjct: 181 AEILYDQVSAEGPSHNRTFVMRVLVNGNELGKGRGRTKKEAEQRAAREALKAL 233 >gi|82750837|ref|YP_416578.1| ribonuclease III [Staphylococcus aureus RF122] gi|90101646|sp|Q2YXI3|RNC_STAAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|82656368|emb|CAI80786.1| Ribonuclease III [Staphylococcus aureus RF122] Length = 243 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 5/227 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 R+ T +G+ + N L ++A +HSS + + + ERLEFLGD +L L +S Sbjct: 14 RKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRY 73 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF+ + EG L+ ++V + A ++ L I + K S+ +DV Sbjct: 74 LFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDV 133 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKV 177 E+ I ALYLD G+++ F +K ++ D KT+ QE+ H + Y + Sbjct: 134 FEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNL 193 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H FT V + G A A+G +K+ +EQ AA K+ Sbjct: 194 IKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLK 240 >gi|313124070|ref|YP_004034329.1| ribonuclease iii [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280633|gb|ADQ61352.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 231 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 97/229 (42%), Gaps = 6/229 (2%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ L+++ G F + LLE+A THSS + +YE+LEFLGD +L + Sbjct: 1 MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ HF EGEL+ +++V E S+VA + I++ K ++ Sbjct: 61 SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKKEIKLGVGEEKAGGRKRKALL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 DV E+ AL+LD GIE F+ + + + G Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFLRQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIE 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P F V V + G A G +K+ AEQ AA+ L+ Sbjct: 181 YRVLNESQQP-PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228 >gi|27066029|pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From Thermotoga Maritima At 2.0 A Resolution gi|27066030|pdb|1O0W|B Chain B, Crystal Structure Of Ribonuclease Iii (Tm1102) From Thermotoga Maritima At 2.0 A Resolution Length = 252 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 9/227 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58 +K G F N LL +AL HSS ++ ES E+LEFLGD +L L + + Sbjct: 21 VEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEI 80 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + A+ G+L+ ++ S E + V+R+++L F+ + K SI AD Sbjct: 81 LYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADA 140 Query: 119 VESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E+L+AA+YLD G E + + + G+ D KT LQE ++ V PEY Sbjct: 141 FEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYI 200 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + D D F V V ++G A G +K+ AE+ AA ++ Sbjct: 201 LVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL 247 >gi|24372926|ref|NP_716968.1| ribonuclease III [Shewanella oneidensis MR-1] gi|81462673|sp|Q8EH81|RNC_SHEON RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|24347062|gb|AAN54413.1|AE015579_2 ribonuclease III [Shewanella oneidensis MR-1] Length = 226 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + L + +GY F N LL +ALTH S ++ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNLPRLCRTLGYEFKNLDLLTQALTHRSAAN---KHNERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV +T + +A+ L ++ + K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVRGDTLTLIAQAFKLGDYLFLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD +EV + ++ +R ++ G ++DAKT LQE+ P+Y+V Sbjct: 118 EAIIGAIYLDSDLEVCRQLLLNWYAERLAEIQPGINQKDAKTLLQEYLQGLKKPLPDYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 G HD FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 178 INIEGDAHDQTFTVECRIDDLSQSVIGVASSRRKAEQIAAAQVLELLK 225 >gi|15926816|ref|NP_374349.1| ribonuclease III [Staphylococcus aureus subsp. aureus N315] gi|21282845|ref|NP_645933.1| ribonuclease III [Staphylococcus aureus subsp. aureus MW2] gi|49483396|ref|YP_040620.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA252] gi|49486072|ref|YP_043293.1| ribonuclease III [Staphylococcus aureus subsp. aureus MSSA476] gi|57651802|ref|YP_186108.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL] gi|87160069|ref|YP_493823.1| ribonuclease III [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194940|ref|YP_499740.1| ribonuclease III [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267724|ref|YP_001246667.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH9] gi|150393782|ref|YP_001316457.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH1] gi|151221355|ref|YP_001332177.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman] gi|161509405|ref|YP_001575064.1| ribonuclease III [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142023|ref|ZP_03566516.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315591|ref|ZP_04838804.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731850|ref|ZP_04866015.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733529|ref|ZP_04867694.1| RNase III [Staphylococcus aureus subsp. aureus TCH130] gi|257425287|ref|ZP_05601712.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053] gi|257427947|ref|ZP_05604345.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322] gi|257430580|ref|ZP_05606962.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397] gi|257433341|ref|ZP_05609699.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410] gi|257436183|ref|ZP_05612230.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876] gi|257795711|ref|ZP_05644690.1| ribonuclease III [Staphylococcus aureus A9781] gi|258415935|ref|ZP_05682205.1| ribonuclease III [Staphylococcus aureus A9763] gi|258419682|ref|ZP_05682649.1| ribonuclease III [Staphylococcus aureus A9719] gi|258423926|ref|ZP_05686811.1| ribonuclease III [Staphylococcus aureus A9635] gi|258434853|ref|ZP_05688927.1| ribonuclease III [Staphylococcus aureus A9299] gi|258444571|ref|ZP_05692900.1| ribonuclease III [Staphylococcus aureus A8115] gi|258447596|ref|ZP_05695740.1| ribonuclease III [Staphylococcus aureus A6300] gi|258449438|ref|ZP_05697541.1| ribonuclease III [Staphylococcus aureus A6224] gi|258454817|ref|ZP_05702781.1| ribonuclease III [Staphylococcus aureus A5937] gi|262048131|ref|ZP_06021018.1| RNase III [Staphylococcus aureus D30] gi|262051862|ref|ZP_06024078.1| RNase III [Staphylococcus aureus 930918-3] gi|269202849|ref|YP_003282118.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98] gi|282892720|ref|ZP_06300955.1| ribonuclease III [Staphylococcus aureus A8117] gi|282903787|ref|ZP_06311675.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160] gi|282905551|ref|ZP_06313406.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260] gi|282908526|ref|ZP_06316356.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910805|ref|ZP_06318608.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049] gi|282914009|ref|ZP_06321796.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899] gi|282916483|ref|ZP_06324245.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139] gi|282918931|ref|ZP_06326666.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427] gi|282920016|ref|ZP_06327745.1| ribonuclease III [Staphylococcus aureus A9765] gi|282924054|ref|ZP_06331730.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101] gi|282927574|ref|ZP_06335190.1| ribonuclease III [Staphylococcus aureus A10102] gi|283770295|ref|ZP_06343187.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19] gi|283957975|ref|ZP_06375426.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97] gi|284024157|ref|ZP_06378555.1| ribonuclease III [Staphylococcus aureus subsp. aureus 132] gi|293501041|ref|ZP_06666892.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424] gi|293510001|ref|ZP_06668709.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809] gi|293526589|ref|ZP_06671274.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015] gi|294848227|ref|ZP_06788974.1| ribonuclease III [Staphylococcus aureus A9754] gi|295407172|ref|ZP_06816973.1| ribonuclease III [Staphylococcus aureus A8819] gi|295427719|ref|ZP_06820351.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16] gi|296274790|ref|ZP_06857297.1| ribonuclease III [Staphylococcus aureus subsp. aureus MR1] gi|297208123|ref|ZP_06924554.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245941|ref|ZP_06929800.1| ribonuclease III [Staphylococcus aureus A8796] gi|297591322|ref|ZP_06949960.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8] gi|300912203|ref|ZP_07129646.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70] gi|304381203|ref|ZP_07363856.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54039243|sp|P66669|RNC_STAAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54041615|sp|P66668|RNC_STAAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56749389|sp|Q6G9Y0|RNC_STAAS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56749418|sp|Q6GHK2|RNC_STAAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|73917582|sp|Q5HGJ9|RNC_STAAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122539710|sp|Q2FZ50|RNC_STAA8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|123486215|sp|Q2FHK5|RNC_STAA3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043358|sp|A6U152|RNC_STAA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043359|sp|A5ISB8|RNC_STAA9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043360|sp|A6QGD3|RNC_STAAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043361|sp|A8Z3R9|RNC_STAAT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|13701033|dbj|BAB42328.1| RNase III [Staphylococcus aureus subsp. aureus N315] gi|21204284|dbj|BAB94981.1| RNase III [Staphylococcus aureus subsp. aureus MW2] gi|49241525|emb|CAG40211.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus MRSA252] gi|49244515|emb|CAG42944.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus MSSA476] gi|57285988|gb|AAW38082.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL] gi|87126043|gb|ABD20557.1| ribonuclease III [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202498|gb|ABD30308.1| ribonuclease III, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740793|gb|ABQ49091.1| RNAse III [Staphylococcus aureus subsp. aureus JH9] gi|149946234|gb|ABR52170.1| Ribonuclease III [Staphylococcus aureus subsp. aureus JH1] gi|150374155|dbj|BAF67415.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman] gi|160368214|gb|ABX29185.1| ribonuclease III [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724449|gb|EES93178.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728583|gb|EES97312.1| RNase III [Staphylococcus aureus subsp. aureus TCH130] gi|257271744|gb|EEV03882.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053] gi|257274788|gb|EEV06275.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322] gi|257278708|gb|EEV09327.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397] gi|257281434|gb|EEV11571.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410] gi|257284465|gb|EEV14585.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876] gi|257789683|gb|EEV28023.1| ribonuclease III [Staphylococcus aureus A9781] gi|257839271|gb|EEV63745.1| ribonuclease III [Staphylococcus aureus A9763] gi|257844267|gb|EEV68649.1| ribonuclease III [Staphylococcus aureus A9719] gi|257845955|gb|EEV69984.1| ribonuclease III [Staphylococcus aureus A9635] gi|257849214|gb|EEV73196.1| ribonuclease III [Staphylococcus aureus A9299] gi|257850064|gb|EEV74017.1| ribonuclease III [Staphylococcus aureus A8115] gi|257853787|gb|EEV76746.1| ribonuclease III [Staphylococcus aureus A6300] gi|257857426|gb|EEV80324.1| ribonuclease III [Staphylococcus aureus A6224] gi|257863200|gb|EEV85964.1| ribonuclease III [Staphylococcus aureus A5937] gi|259160263|gb|EEW45291.1| RNase III [Staphylococcus aureus 930918-3] gi|259163697|gb|EEW48252.1| RNase III [Staphylococcus aureus D30] gi|262075139|gb|ACY11112.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98] gi|269940725|emb|CBI49106.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus TW20] gi|282314026|gb|EFB44418.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101] gi|282316741|gb|EFB47115.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427] gi|282319923|gb|EFB50271.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139] gi|282322077|gb|EFB52401.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899] gi|282325410|gb|EFB55719.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049] gi|282327588|gb|EFB57871.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330843|gb|EFB60357.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260] gi|282590577|gb|EFB95654.1| ribonuclease III [Staphylococcus aureus A10102] gi|282594732|gb|EFB99716.1| ribonuclease III [Staphylococcus aureus A9765] gi|282595405|gb|EFC00369.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160] gi|282764717|gb|EFC04842.1| ribonuclease III [Staphylococcus aureus A8117] gi|283460442|gb|EFC07532.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19] gi|283470446|emb|CAQ49657.1| ribonuclease III [Staphylococcus aureus subsp. aureus ST398] gi|283790124|gb|EFC28941.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97] gi|285816915|gb|ADC37402.1| Ribonuclease III [Staphylococcus aureus 04-02981] gi|290920661|gb|EFD97724.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015] gi|291096046|gb|EFE26307.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424] gi|291466945|gb|EFF09463.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809] gi|294825027|gb|EFG41449.1| ribonuclease III [Staphylococcus aureus A9754] gi|294968025|gb|EFG44053.1| ribonuclease III [Staphylococcus aureus A8819] gi|295128077|gb|EFG57711.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887366|gb|EFH26268.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177105|gb|EFH36359.1| ribonuclease III [Staphylococcus aureus A8796] gi|297576208|gb|EFH94924.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8] gi|298694526|gb|ADI97748.1| Ribonuclease III [Staphylococcus aureus subsp. aureus ED133] gi|300886449|gb|EFK81651.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70] gi|302332837|gb|ADL23030.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus JKD6159] gi|302751056|gb|ADL65233.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340186|gb|EFM06127.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438389|gb|ADQ77460.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH60] gi|312829627|emb|CBX34469.1| ribonuclease III [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131026|gb|EFT87010.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS03] gi|315194121|gb|EFU24514.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS00] gi|315198472|gb|EFU28801.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS01] gi|320140951|gb|EFW32798.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA131] gi|320144334|gb|EFW36100.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA177] gi|323441008|gb|EGA98715.1| ribonuclease III [Staphylococcus aureus O11] gi|323442325|gb|EGA99955.1| ribonuclease III [Staphylococcus aureus O46] gi|329313902|gb|AEB88315.1| Ribonuclease 3 [Staphylococcus aureus subsp. aureus T0131] gi|329724757|gb|EGG61262.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21189] gi|329727692|gb|EGG64148.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21172] gi|329733624|gb|EGG69952.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21193] Length = 243 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 5/227 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 R+ T +G+ + N L ++A +HSS + + + ERLEFLGD +L L +S Sbjct: 14 RKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRY 73 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF+ + EG L+ ++V + A ++ L I + K S+ +D Sbjct: 74 LFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDA 133 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKV 177 E+ I ALYLD G+++ F +K ++ D KT+ QE+ H + Y + Sbjct: 134 FEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNL 193 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H FT V + G A A+G +K+ +EQ AA K+ Sbjct: 194 IKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLK 240 >gi|119944412|ref|YP_942092.1| ribonuclease III [Psychromonas ingrahamii 37] gi|189043334|sp|A1SSM8|RNC_PSYIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|119863016|gb|ABM02493.1| RNAse III [Psychromonas ingrahamii 37] Length = 228 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 111/220 (50%), Gaps = 5/220 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE+R+ Y F++ SLL++ALTH S ERLEFLGD IL IST L+ F Sbjct: 8 LKRLERRVDYTFSDFSLLQQALTHRSA---LGNHNERLEFLGDSILSYAISTDLYARFPK 64 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS +LV + +++ RE L + + K SI AD VE++I A Sbjct: 65 VDEGDLSRMRATLVCGKMLAEIGREFQLGDCLILGPGELKSGGFRRDSIIADGVEAIIGA 124 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +LD I+ + K++ R ++D KT LQE ++ P Y+V G Sbjct: 125 AFLDSDIDTVKKLILKWFDSRLNTIEPGISQKDPKTRLQEHLQSRKQPLPIYEVLEIKGE 184 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H+ RFT+ I GL QG S+R AEQ+AA ++L Sbjct: 185 AHNQRFTMSCSIDGLKSVQGQGTSRRKAEQIAANKMLDSL 224 >gi|52424423|ref|YP_087560.1| ribonuclease III [Mannheimia succiniciproducens MBEL55E] gi|81387548|sp|Q65VN5|RNC_MANSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|52306475|gb|AAU36975.1| Rnc protein [Mannheimia succiniciproducens MBEL55E] Length = 224 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 115/228 (50%), Gaps = 8/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L L+++I Y F + +LL++ALTH S + + ERLEFLGD IL I+ L+ Sbjct: 1 MNHLD--RLQRQISYEFKDITLLKQALTHRSAA---TKHNERLEFLGDAILNYTIADALY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ L ++ + K SI AD VE Sbjct: 56 HQFPKCNEGELSRMRATLVREPTLAILARQFKLGEYMALGHGELKSGGFRRESILADCVE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD + A ++++ R +K G+ ++D KT LQE+ P Y V Sbjct: 116 AIIGAISLDSSLVSATQITLHWYEKLLREIKPGENQKDPKTRLQEYLQGHRLALPTYDVK 175 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H FT+ + L G+ S+R AEQ AA ++L I Sbjct: 176 DIKGEAHCQTFTIECHVPNLDRTFIGVGSSRRKAEQAAAEQILTALEI 223 >gi|281491298|ref|YP_003353278.1| ribonuclease III [Lactococcus lactis subsp. lactis KF147] gi|281375039|gb|ADA64557.1| Ribonuclease III [Lactococcus lactis subsp. lactis KF147] Length = 231 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 102/223 (45%), Gaps = 9/223 (4%) Query: 8 TLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 L+K++ G F + LL+ THSS ++ + + ERLEFLGD L L+IS L Sbjct: 3 KLQKKLKNDYGLVFNDEDLLKTVFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYL 62 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EGELS +S+V E+ + +R F+R+ K + ++ Sbjct: 63 YRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLF 122 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+ + AL++D G++ F+ D KTELQE T YK+ Sbjct: 123 EAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVIDYKTELQEVLQIGGETTISYKIL 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP HD F V +G +G+ SK+ AEQ AA +K Sbjct: 183 KEEGPAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225 >gi|257452427|ref|ZP_05617726.1| ribonuclease III [Fusobacterium sp. 3_1_5R] Length = 232 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 115/230 (50%), Gaps = 7/230 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 + LE RI Y F +++LL+ AL H S + ++ + E+LE LGD +LGL+++ Sbjct: 1 MSKNLVDLEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLVVAE 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ + KEG L+ + VS + ++R+L + ++ +S SI D Sbjct: 61 YLYQKYPEEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSILGD 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEY 175 V E+++ A+YLD G A +V + K F D KT LQE+ K+ P+Y Sbjct: 121 VFEAILGAIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDIPKY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + GPDH F + V+I A+ +K+ AEQ+AA ++ K G+ Sbjct: 181 TLVGEEGPDHRKLFEMQVQIQNN-IAKAKGTNKKIAEQMAAKQLCKELGV 229 >gi|328952899|ref|YP_004370233.1| Ribonuclease 3 [Desulfobacca acetoxidans DSM 11109] gi|328453223|gb|AEB09052.1| Ribonuclease 3 [Desulfobacca acetoxidans DSM 11109] Length = 231 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 116/225 (51%), Gaps = 5/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLIST 57 M+ + + LE+++ Y+F NR LE+AL HSS ++ S ERLEF GD +L L IS Sbjct: 1 MTDIHLTELERQLRYSFKNRRWLEQALVHSSYAYEFPLQGPSNERLEFFGDAVLSLFISD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L ++ A EG LS SLV+A + +AR LDL +R+ + S+ AD Sbjct: 61 FLMEYYPQAGEGLLSRWRASLVNARHLAGIARSLDLGGHLRLGRGEEQQSGRRKPSVLAD 120 Query: 118 VVESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 +E+++AA+YLDGG A V L+ +D KT LQE+A VTP Y Sbjct: 121 ALEAVLAAVYLDGGFAAARGVVKLLFQASLTRLEDKASMQDFKTLLQEYAQKNLKVTPTY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +V +GP H F V V ++ +G SK+ A Q AA L Sbjct: 181 RVVTATGPAHARTFEVEVWLADQPWGRGQGKSKKQAAQEAARLAL 225 >gi|167040357|ref|YP_001663342.1| ribonuclease III [Thermoanaerobacter sp. X514] gi|256750709|ref|ZP_05491594.1| ribonuclease III [Thermoanaerobacter ethanolicus CCSD1] gi|300914441|ref|ZP_07131757.1| ribonuclease III [Thermoanaerobacter sp. X561] gi|307724323|ref|YP_003904074.1| ribonuclease III [Thermoanaerobacter sp. X513] gi|166854597|gb|ABY93006.1| Ribonuclease III [Thermoanaerobacter sp. X514] gi|256750292|gb|EEU63311.1| ribonuclease III [Thermoanaerobacter ethanolicus CCSD1] gi|300889376|gb|EFK84522.1| ribonuclease III [Thermoanaerobacter sp. X561] gi|307581384|gb|ADN54783.1| ribonuclease III [Thermoanaerobacter sp. X513] Length = 246 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 74/214 (34%), Positives = 115/214 (53%), Gaps = 5/214 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTL 58 S LE+RI Y+F +++LL +ALTHSS +H + S ERLEFLGD +L L+IS Sbjct: 16 KRENLSELEERINYSFKDKNLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEY 75 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + +EG LS +V + ++ ARE++L +F+R+ SI AD Sbjct: 76 LYKNRKDLEEGSLSKYRAEIVCEPSLARCAREIELGNFLRIGKGEELTGGRERDSILADA 135 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYK 176 +E+++AA+YLDGG+EV + + +K + + RD KT+LQE + Y+ Sbjct: 136 MEAILAAVYLDGGLEVVRNVILELFKNIIEEVLEGLIYRDYKTKLQEVVQSMEIGKIIYE 195 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + GPDH+ F V I + +G SK+ Sbjct: 196 LIEEMGPDHNKTFVTQVRIGDVILGKGYGKSKKE 229 >gi|258452531|ref|ZP_05700537.1| ribonuclease III [Staphylococcus aureus A5948] gi|257859749|gb|EEV82591.1| ribonuclease III [Staphylococcus aureus A5948] Length = 243 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 5/227 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 R+ T +G+ + N L ++A +HSS + + + ERLEFLGD +L L +S Sbjct: 14 RKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRY 73 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF+ + EG L+ ++V + A ++ L I + K S+ +D Sbjct: 74 LFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDA 133 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKV 177 E+ I ALYLD G+++ F +K ++ D KT+ QE+ H + Y + Sbjct: 134 FEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNL 193 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H FT V + G A A+G +K+ +EQ AA K+ Sbjct: 194 IKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLK 240 >gi|152999778|ref|YP_001365459.1| ribonuclease III [Shewanella baltica OS185] gi|189043347|sp|A6WKQ7|RNC_SHEB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|151364396|gb|ABS07396.1| Ribonuclease III [Shewanella baltica OS185] Length = 226 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 125/228 (54%), Gaps = 7/228 (3%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + L + +GY F N LL +ALTH S ++ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNLPRLCRTLGYEFKNIELLTQALTHRSAAN---KHNERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV +T + +A+E L ++ + K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVRGDTLTIIAQEFKLGDYLYLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD +EV + K++ +R ++ G ++DAKT LQE P+Y+V Sbjct: 118 EAIIGAVYLDSDLEVCRALLLKWYAERLAEIQPGISQKDAKTLLQEHLQGFKKPLPDYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 G HD FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 178 INIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAAAQVLELLK 225 >gi|94987013|ref|YP_594946.1| ribonuclease III [Lawsonia intracellularis PHE/MN1-00] gi|94731262|emb|CAJ54625.1| dsRNA-specific ribonuclease [Lawsonia intracellularis PHE/MN1-00] Length = 233 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 4/224 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60 + L++ +GY F + LL ALTHSS + E ERLEFLGD +L + IS LF Sbjct: 1 MDLKELQEDLGYYFKDEQLLITALTHSSWVNENDVTAEHNERLEFLGDAVLEICISEELF 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 A+EGEL+ ++LV+ + +AREL L ++ ++ ++ AD +E Sbjct: 61 KRHPEAREGELTRMRSNLVNTKMLVLLARELKLNQYLLLARGEENQGGRQRNTLLADTME 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTF 179 ++ A+++DG + A + K + K +D KT LQE P+Y + Sbjct: 121 AVFGAVFVDGDLFYARKVISKSYDNFWPKKSAALVKDFKTRLQEETQRHIKGLPKYILEG 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP+H+ F V VE+ + + AEQ AA L+ Sbjct: 181 MHGPEHEKIFEVCVELPDGQVFRASGTGLKRAEQEAARIALESL 224 >gi|309972852|gb|ADO96053.1| RNase III, dsRNA [Haemophilus influenzae R2846] Length = 227 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 120/231 (51%), Gaps = 11/231 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L LE++IGY F + +LL+ ALTH S + + ERLEFLGD IL I+ L+ Sbjct: 1 MNHLD--RLERKIGYRFNDIALLKLALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ +L ++ + S K+ SI AD VE Sbjct: 56 HQFPRCNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD G+ V + +++Q +K G ++DAKT LQE+ K P Y+V Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVV 175 Query: 179 FRSGPDHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G H FTV ++ S+R AEQ AA ++LK I Sbjct: 176 NIQGEAHCQIFTVECKVKSAEKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226 >gi|222085390|ref|YP_002543920.1| ribonuclease III [Agrobacterium radiobacter K84] gi|254807233|sp|B9JC73|RNC_AGRRK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|221722838|gb|ACM25994.1| ribonuclease III [Agrobacterium radiobacter K84] Length = 239 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 137/219 (62%), Positives = 166/219 (75%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 TLE IG+AF + L+ ALTH+S +YERLEFLGDR+LGL I+ LLF F +A Sbjct: 14 TLEAAIGHAFVEKERLDWALTHASARTHKAGNYERLEFLGDRVLGLCIAELLFRTFGTAT 73 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EGELSVR N LVSAETC+ VA E+ L FIR +D++K M +++ADVVESLIAALY Sbjct: 74 EGELSVRLNQLVSAETCAAVADEMQLHLFIRTGADVKKLTGKRMLNVRADVVESLIAALY 133 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 LDGG+EVA F+ +YW+ RA++ RRDAKTELQEWAHAKFGVTP Y+V RSGPDHDP Sbjct: 134 LDGGLEVARKFILRYWEGRAVRPDGARRDAKTELQEWAHAKFGVTPVYRVDDRSGPDHDP 193 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 RFTV VE++G AP G++ SKRAAEQVAA +L+REGIW Sbjct: 194 RFTVTVEVAGAAPETGIERSKRAAEQVAATRILEREGIW 232 >gi|51473232|ref|YP_066989.1| ribonuclease III [Rickettsia typhi str. Wilmington] gi|81390308|sp|Q68XY5|RNC_RICTY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|51459544|gb|AAU03507.1| RNase D [Rickettsia typhi str. Wilmington] Length = 227 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 117/228 (51%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSS----ISHSYQESYERLEFLGDRILGLLIS 56 M + + LE +GY+F N+ LL +AL+H S + Y + YERLEFLGD +L LLI+ Sbjct: 1 MES--FEKLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLIT 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +LF +F++ KEG L+ + LV ET V +L L +I ++ + Sbjct: 59 EILFKNFENYKEGNLAKIRSYLVCKETICIVGTKLALKDYIIMTHGEEVAGGRDNPNNIE 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 +V E+LIAA+YLD IE+ ++K W + D KT LQEWA A P Y+ Sbjct: 119 NVTEALIAAIYLDSNIEITHNIIEKLWAEFMKVQNLTDYDPKTALQEWAQASSNHLPIYR 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + R G H FTV+V++ S + AE+ AA +L R Sbjct: 179 LIKREGAAHSSIFTVLVKVKDYEQIC-TGYSIKEAEKKAARCLLHRLK 225 >gi|304321233|ref|YP_003854876.1| ribonuclease III [Parvularcula bermudensis HTCC2503] gi|303300135|gb|ADM09734.1| ribonuclease III [Parvularcula bermudensis HTCC2503] Length = 238 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 95/213 (44%), Positives = 126/213 (59%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G+ F +RSLL +ALTH+S+S + ERLEFLGDR+LGLL + LL+ F EGEL+ Sbjct: 22 GHRFDDRSLLARALTHASVSQDGLKDLERLEFLGDRVLGLLAADLLWRRFPDMAEGELAP 81 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 R N+LV ETC+ AR L +R+S+ + +I D ESL+ A+Y+DGG+ Sbjct: 82 RLNALVRRETCADAARHWKLGEAVRMSAGEERTGGRNKDAILGDACESLLGAIYIDGGLG 141 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 A T + YW R + DAKT LQEWA K TP Y+ R GPDH P FTV V Sbjct: 142 AAKTAFETYWTPRVEELIDDHADAKTALQEWAQEKGLGTPSYRDIDRDGPDHAPIFTVAV 201 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 + GL A+ +KR+A+ AA +L REG+W Sbjct: 202 VVQGLESAEARGPNKRSAQMQAARSILVREGVW 234 >gi|289450366|ref|YP_003474966.1| ribonuclease III [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184913|gb|ADC91338.1| ribonuclease III [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 245 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 7/226 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + E +IGY+F N+ L +ALTHS+ S+ + E ERLEFLGD +LGL + LF Sbjct: 14 QICNFENKIGYSFKNKKYLIEALTHSTYSYEHSMYGLECNERLEFLGDLVLGLTVGNHLF 73 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + EG+LS +LV T + VA +L + + S AD E Sbjct: 74 KTFPTYPEGKLSKLKAALVCEPTLAIVAHNWELDKVLLLGKGEETSGGRNKPSSLADATE 133 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE---LQEWAHAKFGVTPEYKV 177 +++ A++ D A T + + + ++ + L++ + + Sbjct: 134 AVLGAVFCDADFVAAATVILRALEPLIQEAVAGNLVYDYKSALLEKIQTKYHSSQLRFVL 193 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP H P F + + + A + SK+ AEQ+AA + L+ Sbjct: 194 LDETGPAHSPSFKMGIYLVNDLLATAIGSSKKEAEQIAAKQALQLL 239 >gi|253699690|ref|YP_003020879.1| ribonuclease III [Geobacter sp. M21] gi|251774540|gb|ACT17121.1| ribonuclease III [Geobacter sp. M21] Length = 232 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 120/224 (53%), Gaps = 5/224 (2%) Query: 1 MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLIS 56 M+ ++ +E R+GY F +R LL +ALTH + + +RLEF GD +L L+S Sbjct: 1 MNDMQHDPLEGIEGRLGYRFRDRGLLAEALTHRTYVNEAGGRDNQRLEFFGDAVLDFLLS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +L F ++EGEL+ +LV + +++A ELDL +R+ + S+ A Sbjct: 61 DMLLVRFPDSREGELTRIRAALVDEASLAKIAIELDLGQALRLGRGEERGGGRQKRSLLA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEY 175 D E+L+AALYLDGG++ A V+ + RDAKTELQE A G P Y Sbjct: 121 DAFEALLAALYLDGGLDPARRVVEALFAPLLSSRDLLSGRDAKTELQEKARLVKGELPRY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 ++ SGPDHD RFTV V + +G+ SK+ AEQ AA Sbjct: 181 QLKEVSGPDHDKRFTVEVYLGEELMGEGVGKSKKEAEQDAARAA 224 >gi|255746868|ref|ZP_05420813.1| ribonuclease III [Vibrio cholera CIRS 101] gi|262162033|ref|ZP_06031049.1| ribonuclease III [Vibrio cholerae INDRE 91/1] gi|255735270|gb|EET90670.1| ribonuclease III [Vibrio cholera CIRS 101] gi|262028282|gb|EEY46939.1| ribonuclease III [Vibrio cholerae INDRE 91/1] Length = 221 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + ERLEFLGD IL +I+ L+ F Sbjct: 2 NKLTSKLGYTFKETELLNLALTHRSA---NGKHNERLEFLGDSILSFVIADELYRRFPKV 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 59 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118 Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A + + + +K G ++D KT LQE+ + P Y VT G Sbjct: 119 YLDSDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 218 >gi|15642457|ref|NP_232090.1| ribonuclease III [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590982|ref|ZP_01678301.1| ribonuclease III [Vibrio cholerae 2740-80] gi|153820073|ref|ZP_01972740.1| ribonuclease III [Vibrio cholerae NCTC 8457] gi|153823692|ref|ZP_01976359.1| ribonuclease III [Vibrio cholerae B33] gi|227082582|ref|YP_002811133.1| ribonuclease III [Vibrio cholerae M66-2] gi|229507479|ref|ZP_04396984.1| ribonuclease III [Vibrio cholerae BX 330286] gi|229512326|ref|ZP_04401805.1| ribonuclease III [Vibrio cholerae B33] gi|229519462|ref|ZP_04408905.1| ribonuclease III [Vibrio cholerae RC9] gi|229606984|ref|YP_002877632.1| ribonuclease III [Vibrio cholerae MJ-1236] gi|254849586|ref|ZP_05238936.1| ribonuclease III [Vibrio cholerae MO10] gi|298500182|ref|ZP_07009987.1| ribonuclease III [Vibrio cholerae MAK 757] gi|18203192|sp|Q9KPB2|RNC_VIBCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807908|sp|C3LR04|RNC_VIBCM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|9657039|gb|AAF95603.1| ribonuclease III [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547159|gb|EAX57288.1| ribonuclease III [Vibrio cholerae 2740-80] gi|126509385|gb|EAZ71979.1| ribonuclease III [Vibrio cholerae NCTC 8457] gi|126518780|gb|EAZ76003.1| ribonuclease III [Vibrio cholerae B33] gi|227010470|gb|ACP06682.1| ribonuclease III [Vibrio cholerae M66-2] gi|229344151|gb|EEO09126.1| ribonuclease III [Vibrio cholerae RC9] gi|229352291|gb|EEO17232.1| ribonuclease III [Vibrio cholerae B33] gi|229354984|gb|EEO19905.1| ribonuclease III [Vibrio cholerae BX 330286] gi|229369639|gb|ACQ60062.1| ribonuclease III [Vibrio cholerae MJ-1236] gi|254845291|gb|EET23705.1| ribonuclease III [Vibrio cholerae MO10] gi|297540875|gb|EFH76929.1| ribonuclease III [Vibrio cholerae MAK 757] Length = 225 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++GY F LL ALTH S + ERLEFLGD IL +I+ L+ F Sbjct: 6 NKLTSKLGYTFKETELLNLALTHRSA---NGKHNERLEFLGDSILSFVIADELYRRFPKV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE DL ++++ K SI AD VE++I A+ Sbjct: 63 NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E A + + + +K G ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ FTV E++G+ P G S+R AEQ AA L++ Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222 >gi|90420862|ref|ZP_01228767.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1] gi|90334837|gb|EAS48609.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1] Length = 252 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 123/236 (52%), Positives = 155/236 (65%), Gaps = 10/236 (4%) Query: 1 MSALR----YSTLEKRIGYAFANRSLLEKALTHSSISH------SYQESYERLEFLGDRI 50 M+ L+ LE RIG F ++ E+ALTHSS+ + SYERLEFLGDR+ Sbjct: 13 MARLKADKPLEELESRIGITFHEKARFERALTHSSLRSSKGGKGEGERSYERLEFLGDRV 72 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 LGL+++ LF+ F A EGELS+R NSLVSA+TC+++A EL L F+R DL+K Sbjct: 73 LGLVVAEKLFDMFPGADEGELSLRLNSLVSADTCAEIADELGLYEFVRHGGDLKKLKSDR 132 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 SI+AD+VESLIAA+YL G+E A F+ +YW R KS RRDAKT LQEWAH + Sbjct: 133 TKSIRADLVESLIAAIYLGEGLETARDFIVRYWGGRLGKSVAARRDAKTALQEWAHTRGP 192 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 VTP+Y++ RSGPDHDP FTV V I +APA G S+R AEQ AA VL RE +W Sbjct: 193 VTPQYEIVERSGPDHDPLFTVRVSIPDVAPADGQGRSRRIAEQEAATAVLIRESVW 248 >gi|160871765|ref|ZP_02061897.1| ribonuclease III [Rickettsiella grylli] gi|159120564|gb|EDP45902.1| ribonuclease III [Rickettsiella grylli] Length = 230 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 124/228 (54%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + +L +++ Y F N LLE AL+H S ++ ERLE+LGD +L +I+ LF Sbjct: 1 MKS-EIESLCEKLNYQFKNPELLEDALSHRSF--RGNKNNERLEYLGDAVLNFVIAAALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 A+EGELS +LV ET + +A+ +L ++R+ + K + SI AD +E Sbjct: 58 RQNIKAREGELSRLRANLVRGETLTDLAQGFELGKYLRLGAGELKTGGAQRKSILADGME 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+YLDGG + T + +++ R ++ +D KT+LQE+ AK P Y + Sbjct: 118 AVVGAIYLDGGFQACETCILRWYANRLENIEMIPDLKDPKTQLQEYLQAKKLALPVYTIL 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225 GP H F V +I GL A G+ S+R AEQ AA ++L+ I Sbjct: 178 ALEGPAHQQSFKVECQIQGLPHKAIGLGSSRRRAEQKAAEKILEELAI 225 >gi|300811711|ref|ZP_07092185.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497287|gb|EFK32335.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 231 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 95/229 (41%), Gaps = 6/229 (2%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ L+++ G F + LLE+A THSS + +YE+LEFLGD +L + Sbjct: 1 MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ HF EGEL+ +++V E S+VA + I + K ++ Sbjct: 61 SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 DV E+ AL+LD GIE F + + + G Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFSSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIE 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P F V V + G A G +K+ AEQ AA+ L+ Sbjct: 181 YRVLNESQQP-PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228 >gi|57506125|ref|ZP_00372047.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195] gi|57015609|gb|EAL52401.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195] Length = 224 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 4/222 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE ++ Y F + LL ALTH S +Y + ERLEFLGD +L L++ LF+ F Sbjct: 3 KLELLEAKLNYKFKEQKLLIYALTHKSAKKNY--NNERLEFLGDAVLDLVVGEFLFHKFK 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+LS +LV+ ++ +++A L+L FI +S + + SI +D E+LI Sbjct: 61 NEAEGDLSKLRAALVNEKSFAKIATSLNLGDFIFMSIAEQNNGGKTKPSILSDTFEALIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AL+L+ G A + ++ +D KT+LQE AK G+TPEY+ G Sbjct: 121 ALHLEAGFIKAKEIALRLIEENFPNIDAKSLFKDYKTKLQEITQAKMGLTPEYETQRAFG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH F + + + G A+ + SK+ A+Q+AA L++ G Sbjct: 181 PDHQKSFEIALNLEGKEMARAIASSKKEAQQMAAKLTLEKLG 222 >gi|315499946|ref|YP_004088749.1| ribonuclease iii [Asticcacaulis excentricus CB 48] gi|315417958|gb|ADU14598.1| ribonuclease III [Asticcacaulis excentricus CB 48] Length = 242 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 88/226 (38%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLF 60 LE ++GY FA+R LL+ ALTH+S+S + ERLEFLGDR+LGLL++ L Sbjct: 16 LDELEAKLGYRFADRQLLDSALTHASVSDGRPKKTVSSDNERLEFLGDRVLGLLVAEALM 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGE+S R + LVS ETC+ VA L + + +R++ K +I D E Sbjct: 76 QAFPQAAEGEMSQRLHGLVSRETCAAVAMSLGVGAAMRLAPGETKSGGRSNLTILGDACE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +LIAA+YLDGG E A W+ + + K+ LQEWA K +P+Y++ Sbjct: 136 ALIAAVYLDGGFETARRIFGPLWQPHIRASHSRSHLNPKSHLQEWAAQKKLPSPKYEIVE 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 RSGPDH P F V + + G P S++ AE+ AA ++ G+ Sbjct: 196 RSGPDHAPIFKVALTLEGYDPVVASGKSRQEAEKAAALSFIEHAGL 241 >gi|281413069|ref|YP_003347148.1| ribonuclease III [Thermotoga naphthophila RKU-10] gi|281374172|gb|ADA67734.1| ribonuclease III [Thermotoga naphthophila RKU-10] Length = 240 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 9/227 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58 +K+ G F N LL +AL HSS ++ ES E+LEFLGD +L L + + Sbjct: 9 VEEFQKKTGINFKNEELLFRALCHSSYANEQNQAGRKNVESNEKLEFLGDAVLELFVCEI 68 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + A+ G+L+ ++ S E + V+R+++L F+ + K SI AD Sbjct: 69 LYKKYPEAEVGDLARAKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADA 128 Query: 119 VESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 E+L+AA+YLD G E + + + G+ D KT LQE ++ V PEY Sbjct: 129 FEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMRGEMLFDYKTALQEIVQSEHKVPPEYV 188 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + D D F V V + G + A G +K+ AE+ AA ++ Sbjct: 189 LVRTEKNDGDRIFVVEVRVDGKSIAMGRGRTKKEAEKEAARIAYEKL 235 >gi|325126041|gb|ADY85371.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 231 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 6/229 (2%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ L+++ G F + LLE+A THSS + +YE+LEFLGD +L + Sbjct: 1 MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ HF EGEL+ +++V E S+VA + I + K ++ Sbjct: 61 SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 DV E+ AL+LD GIE F+ + + + G Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFLSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIE 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P F V V + G A G +K+ AEQ AA+ L+ Sbjct: 181 YRVLNESQQP-PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228 >gi|104774253|ref|YP_619233.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423334|emb|CAI98181.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 231 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 6/229 (2%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ L+++ G F + LLE+A THSS + +YE+LEFLGD +L + Sbjct: 1 MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTFGNYEKLEFLGDAVLEFTV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ HF EGEL+ +++V E S+VA + I + K ++ Sbjct: 61 SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 DV E+ AL+LD GIE F+ + + + G Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFLSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIE 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P F V V + G A G +K+ AEQ AA+ L+ Sbjct: 181 YRVLNESQQP-PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228 >gi|325971140|ref|YP_004247331.1| ribonuclease 3 [Spirochaeta sp. Buddy] gi|324026378|gb|ADY13137.1| Ribonuclease 3 [Spirochaeta sp. Buddy] Length = 248 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 67/215 (31%), Positives = 112/215 (52%), Gaps = 5/215 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +N LL A TH S ++ + + ERLEFLGD +LG+ ++ LF +F + EG+ Sbjct: 28 KITISNLELLNLAFTHRSFANETSDSVDNNERLEFLGDSVLGMCVADWLFRNFPAKAEGD 87 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 S + +VS ++ + +AR+L + ++ + ++ AD +E+L AA YLD Sbjct: 88 FSKIKSVVVSEDSLAMIARQLSVDKYLLLGKGEEFTGGRDKKALLADCMEALFAACYLDS 147 Query: 131 GIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G E A +FV Y +Q+ + RD KT LQE+ ++ P Y + ++GP+HD Sbjct: 148 GFEAAKSFVMLYLEQQIQAVLDDDYHRDYKTSLQEYMQKRWRKVPSYTLVRKTGPEHDFT 207 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V V+++G +K+ AEQ+AA + Sbjct: 208 FFVEVDVNGQVFGPASGANKKQAEQMAAKLAYDQL 242 >gi|71892313|ref|YP_278047.1| RNase III [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|90101614|sp|Q492D1|RNC_BLOPB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71796419|gb|AAZ41170.1| RNase III [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 229 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 116/226 (51%), Gaps = 9/226 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + + L++++GY F LL +ALTH S S+ + ERLEFLGD IL +I+ LL++ F Sbjct: 1 MLVNALQEKLGYIFNRYDLLLQALTHRSSSN---QHNERLEFLGDAILNYVIANLLYHRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG +S +LV T + +ARE +L ++++ K SI A+ +E+LI Sbjct: 58 PHISEGGMSRMRANLVRENTLATLAREFNLGDYLQLGQGELKSGGYQRESILANTIEALI 117 Query: 124 AALYLDGGIE-----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++LD I+ + + + S ++D KT LQE+ + P Y + Sbjct: 118 GGIFLDSNIQTIEILIINWYKIRIDHMDPYASYDTQKDPKTRLQEYMQRRRLPLPVYWIN 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FT+ ++S L P G S+R AEQ AAA+VL+ Sbjct: 178 QIIGEAHNQIFTINCQVSELTQPIIGCGSSRRRAEQNAAAKVLEAL 223 >gi|148270763|ref|YP_001245223.1| ribonuclease III [Thermotoga petrophila RKU-1] gi|189043372|sp|A5IN74|RNC_THEP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|147736307|gb|ABQ47647.1| RNAse III [Thermotoga petrophila RKU-1] Length = 240 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 9/227 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58 +K+ G F N LL +AL HSS ++ ES E+LEFLGD +L L + + Sbjct: 9 VEEFQKKTGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEI 68 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + A+ G+L+ ++ S E + V+REL+L F+ + K SI AD Sbjct: 69 LYKKYPEAEVGDLARAKSAAASEEVLAMVSRELNLGKFLFLGKGEEKTGGRDRDSILADA 128 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYK 176 E+L+AA+YLD G ++ ++ K + D KT LQE ++ V PEY Sbjct: 129 FEALLAAIYLDQGYHKIKELFEEEFELYIEKIMRGEMLFDYKTALQEIVQSEHKVPPEYV 188 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + D D F V V + G + A G +K+ AE+ AA ++ Sbjct: 189 LVRTEKNDGDRIFVVEVRVDGKSIAMGRGRTKKEAEKEAARIAYEKL 235 >gi|51892591|ref|YP_075282.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863] gi|81388984|sp|Q67PF5|RNC_SYMTH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|51856280|dbj|BAD40438.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863] Length = 235 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 71/214 (33%), Positives = 111/214 (51%), Gaps = 5/214 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 + +GY F + SLL +ALTH++ ++ + + ERLEFLGD +LG++I+ L+ + E Sbjct: 16 EALGYEFRDESLLLEALTHTTYANEHPRARANERLEFLGDSVLGMVIAAHLYERYPDLPE 75 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GEL+ ++V + ++ AR L + +R S +D E+++ ALYL Sbjct: 76 GELTKIRAAVVCEPSLAERARVLGIGRHMRFGRG-EAVSGRDRDSTLSDAFEAVVGALYL 134 Query: 129 DGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 DGG+E A FV + Q + + R D KT+LQE + P+Y++ GP H Sbjct: 135 DGGLEAAQRFVLRELGQLVEAARQGLVRVDYKTQLQEQLQRQGAAAPQYRLLVEEGPAHL 194 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 RF V V G G +K+ AEQ AA + L Sbjct: 195 RRFQVGVYFEGRLLGTGWGRNKKEAEQEAARQAL 228 >gi|319896432|ref|YP_004134625.1| ribonuclease iii [Haemophilus influenzae F3031] gi|317431934|emb|CBY80282.1| Ribonuclease III [Haemophilus influenzae F3031] Length = 227 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 121/231 (52%), Gaps = 11/231 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L LE++IGY F + LL++ALTH S + + ERLEFLGD IL I+ L+ Sbjct: 1 MNHLD--RLERKIGYCFNDIVLLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ +L ++ + S K+ SI AD VE Sbjct: 56 HQFPRCNEGELSRMRATLVRESTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD G+ V + +++Q +K G ++DAKT LQE+ K P Y+V Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVV 175 Query: 179 FRSGPDHDPRFTVVVEIS--GLA--PAQGMDCSKRAAEQVAAAEVLKREGI 225 G H FTV ++ G S+R AEQ AA ++LK I Sbjct: 176 NIQGEAHCQIFTVECKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226 >gi|329121261|ref|ZP_08249888.1| ribonuclease III [Dialister micraerophilus DSM 19965] gi|327470195|gb|EGF15658.1| ribonuclease III [Dialister micraerophilus DSM 19965] Length = 239 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 111/232 (47%), Gaps = 9/232 (3%) Query: 1 MSALRYSTLEKRIG---YAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGL 53 M R LE+ I N LL ALTH+S ++ ++++ ERLEFLGD +L L Sbjct: 1 MHKNRIKELEEFIKENEIPIENHELLNIALTHTSYANEHKKNKEHDNERLEFLGDAVLDL 60 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 ++ LF + EGEL+ S V C++++ L++ ++ + K S Sbjct: 61 IVGEYLFRKYPLWSEGELTKAKASAVCKPACAEISTRLNVGKYLLLGKGEEKSGGRTRVS 120 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGV 171 I D ESLI A+YLD G EV FV K+ ++ G + +D KT+LQE V Sbjct: 121 ILGDAFESLIGAIYLDIGYEVTFDFVIKHLEKFLDLIMQGDYDKDYKTDLQEILQQNGDV 180 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y V GPDHD + V G G+ SK+ A Q AA E ++R Sbjct: 181 EICYNVIHDEGPDHDKTIWMSVTADGKYLGSGIGKSKKQAAQRAAKEAIERI 232 >gi|315917454|ref|ZP_07913694.1| ribonuclease III [Fusobacterium gonidiaformans ATCC 25563] gi|313691329|gb|EFS28164.1| ribonuclease III [Fusobacterium gonidiaformans ATCC 25563] Length = 235 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 9/233 (3%) Query: 1 MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLL 54 MS++ LE RI Y F +++LL+ AL H S + ++ + E+LE LGD +LGL+ Sbjct: 1 MSSVSKNLVDLEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLV 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ++ L+ + KEG L+ + VS + ++R+L + ++ +S SI Sbjct: 61 VAEYLYQKYPEEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSI 120 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVT 172 DV E+++ A+YLD G A +V + K F D KT LQE+ K+ Sbjct: 121 LGDVFEAILGAIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDI 180 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P+Y + GPDH F + V+I A+ +K+ AEQ+AA ++ K G+ Sbjct: 181 PKYTLVGEEGPDHRKLFEMQVQIQNN-IAKAKGTNKKVAEQMAAKQLCKELGV 232 >gi|117924215|ref|YP_864832.1| ribonuclease III [Magnetococcus sp. MC-1] gi|189043326|sp|A0L633|RNC_MAGSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|117607971|gb|ABK43426.1| RNAse III [Magnetococcus sp. MC-1] Length = 246 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 79/237 (33%), Positives = 115/237 (48%), Gaps = 14/237 (5%) Query: 1 MSALR----YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--------SYERLEFLGD 48 M+A R LE+ + Y F LL+ ALTH S + ERLEFLGD Sbjct: 1 MNAQREPSGLERLEQALDYRFTQSDLLQLALTHRSAPLDGSKAGEVVATTHNERLEFLGD 60 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 +L L++S L+ F EG+LS LV+ + S+VA++L+L ++R+ K Sbjct: 61 SVLNLIVSHRLYKRFGEVPEGQLSQWRAMLVNTRSLSEVAKDLELGRYLRMGRGEAKSGG 120 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAH 166 SI + +E+L+ A+YLDGG E A VD+ + + ++ + +D KT LQE+ Sbjct: 121 REKYSILGNALEALLGAIYLDGGFEAAERVVDRLFAHQVAGIEPEQQGKDYKTLLQEYLQ 180 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 A+ P Y V GP H+ F V G SKR AEQ AA + L+ Sbjct: 181 ARGEALPIYAVLSAEGPPHERVFVVSCHPREQLCGHGQGRSKREAEQHAAQQALELL 237 >gi|57866684|ref|YP_188382.1| ribonuclease III [Staphylococcus epidermidis RP62A] gi|242242516|ref|ZP_04796961.1| ribonuclease III [Staphylococcus epidermidis W23144] gi|73917583|sp|Q5HPV8|RNC_STAEQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|57637342|gb|AAW54130.1| ribonuclease III [Staphylococcus epidermidis RP62A] gi|242234024|gb|EES36336.1| ribonuclease III [Staphylococcus epidermidis W23144] gi|319401475|gb|EFV89685.1| ribonuclease III [Staphylococcus epidermidis FRI909] Length = 245 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 5/225 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 +++ K +G F N L ++A +HSS + + E ERLEFLGD +L L +S LF Sbjct: 16 KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + ALYLD G++ TF +K D KT+ QE+ H++ Y++ Sbjct: 136 AFVGALYLDQGLDTVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIK 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H FT V + A A+G +K+ +EQ AA + K Sbjct: 196 EEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYKLMK 240 >gi|157374287|ref|YP_001472887.1| ribonuclease III [Shewanella sediminis HAW-EB3] gi|189043354|sp|A8FSD6|RNC_SHESH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157316661|gb|ABV35759.1| Ribonuclease III [Shewanella sediminis HAW-EB3] Length = 225 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 115/227 (50%), Gaps = 6/227 (2%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + L + +GY F ++SLLE ALTH S S + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNMPRLCRTLGYEFNDQSLLEHALTHRSAS---SKHNERLEFLGDSILSIIISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F+ F A EG+LS +LV + +++ E L ++ + K SI AD V Sbjct: 58 FHQFPKATEGDLSRMRATLVCGKMLAEIGFEFKLGDYLNLGPGELKSGGFRRESIIADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+Y+D G+E V +++ R ++D KT LQE P YKV Sbjct: 118 EAIIGAVYIDSGVEKCRCLVLSWYESRLAIIQPVNQKDPKTLLQELLQGFKKPLPVYKVI 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224 G H FTV + L P G+ S+R AEQ+AAA+ L+ Sbjct: 178 DIKGEAHAQTFTVECYVEELSKPVIGIASSRRKAEQLAAADALELMK 224 >gi|227543196|ref|ZP_03973245.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866] gi|227181005|gb|EEI61977.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866] Length = 250 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 4/219 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + ++ L +++G + LL ALTH S ++ + ERLEFLGD +LG ++ LF Sbjct: 20 VDHAPLLEKLGTTVS-PELLRLALTHRSFANENGGLPNNERLEFLGDSVLGCSVAWKLFE 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S+ E +S +VS + +ARE+ L +I + SI AD E+ Sbjct: 79 TYPSSPESVISKMRARIVSRFGLADIAREIGLGKYILLGRGEILTDGREKDSILADTTEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 L A++L+ G E A + + ++ + S L + A+ + Sbjct: 139 LFGAIFLEHGFETARHTILTLFHEKIVHASSDSIHTDWKTLLQERAAERKLPMPEYEASF 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +GPDHD FT I G G +K+AAEQ+AA + Sbjct: 199 TGPDHDRFFTATAIIDGKVVGTGQGHNKKAAEQLAAKQA 237 >gi|226951500|ref|ZP_03821964.1| ds RNA ribonuclease III [Acinetobacter sp. ATCC 27244] gi|294651022|ref|ZP_06728362.1| ribonuclease III [Acinetobacter haemolyticus ATCC 19194] gi|226837793|gb|EEH70176.1| ds RNA ribonuclease III [Acinetobacter sp. ATCC 27244] gi|292823123|gb|EFF81986.1| ribonuclease III [Acinetobacter haemolyticus ATCC 19194] Length = 231 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 116/225 (51%), Gaps = 5/225 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L + L+ RIGY F LL+ ALTH S+SH + +YERLEFLGD +LG++I+ L++ Sbjct: 7 NKLNDTRLQARIGYQFQQIDLLKLALTHRSVSHKH--NYERLEFLGDSLLGMIIANYLYH 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EG L+ +LV E ++A +L L+ + +S+ K SI AD VE+ Sbjct: 65 TYPTENEGRLTRMRATLVRQEALGKIANDLQLSRSLILSTGELKSGGHHRESILADTVEA 124 Query: 122 LIAALYLDGGIE---VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+Y+D ++ +D K+ LQE+ A+ P Y+V Sbjct: 125 IIGAIYIDSNDLNLLQGIVLKWYEPYFDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 184 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G + F V + GL QG S+R AEQ AAAE+LK Sbjct: 185 DIQGDAPNQHFKVECLVDGLPKIQGEGSSRRFAEQTAAAEILKLL 229 >gi|163744855|ref|ZP_02152215.1| ribonuclease III [Oceanibulbus indolifex HEL-45] gi|161381673|gb|EDQ06082.1| ribonuclease III [Oceanibulbus indolifex HEL-45] Length = 228 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 92/219 (42%), Positives = 129/219 (58%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 E RIG++FA LL +A+TH+S+S + ++ +RLEFLGDR+LGL+++ L Sbjct: 6 DLKAFEARIGHSFAKPELLVRAVTHASMSSANRDDNQRLEFLGDRVLGLVMAEALLALDP 65 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG+L+ RFN+LV ETC+ VARE+DL +++ ++ D +E++IA Sbjct: 66 GATEGQLAPRFNALVRKETCADVAREIDLGKVLKLGRSEMISGGRRKQALLGDAIEAVIA 125 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLD G E A V + W R + RDAKT LQEWA A+ + P Y T RSGPD Sbjct: 126 AVYLDSGFEAAKGLVLRLWGDRLKTVKEDARDAKTALQEWAQARGLMPPRYVQTDRSGPD 185 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H P FT+ + A A SKRAAEQ AA +L++ Sbjct: 186 HAPVFTITARLDNGAEAAATAPSKRAAEQAAATTLLRQL 224 >gi|257462242|ref|ZP_05626659.1| ribonuclease III [Fusobacterium sp. D12] Length = 232 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 7/227 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 LE I Y F +++LL+ AL H S + ++ + ERLE LGD +LGL+++ L+ Sbjct: 4 NLVDLEHNINYYFNDKNLLKNALIHRSFGNEHRTYKNINNERLELLGDAVLGLVVAEYLY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + KEG L+ + VS S V+R+L + ++ +S SI D E Sbjct: 64 QKYPKEKEGVLAKIKSMAVSEPVLSGVSRKLHIGDYLLLSKGEIVTGGRDRNSILGDAFE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 +++ A+YLD G A +V + K+ F D KT LQE KF P+Y + Sbjct: 124 AILGAIYLDSGFFAAKEYVLFHLKEIIDHIDDFEEILDFKTILQEHCQKKFKEIPKYTLL 183 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH F + V+I A+ +K+ AEQ AA ++ K G+ Sbjct: 184 REEGPDHRKLFEMQVQIQDKV-ARAKGNNKKIAEQKAAKKLCKEMGV 229 >gi|323142424|ref|ZP_08077250.1| ribonuclease III [Phascolarctobacterium sp. YIT 12067] gi|322413117|gb|EFY04010.1| ribonuclease III [Phascolarctobacterium sp. YIT 12067] Length = 239 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 108/226 (47%), Gaps = 7/226 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLL 59 + + + +G + LL+ ALTH+S +H ++ ER+EFLGD +L +++ST + Sbjct: 8 QLQSFCQGLGIHMHDLELLDMALTHTSYAHEAKQYPKPHHNERIEFLGDSVLSVIVSTYM 67 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + +F EG+L+ LV + + A+++ L ++++ SI AD Sbjct: 68 YKNFPDLAEGQLTKLRAYLVCEGSLYEYAKKIHLGDYLQLGKGEELSGGRERPSILADAF 127 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 ES++ A+YLD G EV ++ + + D KT LQE+ Y + Sbjct: 128 ESVLGAIYLDQGFEVVQAYLLGMMQSEIDFICRHGIFNDYKTRLQEYLQRDGDADIHYVL 187 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP+H+ FT V + +G +K+ +EQ AA + L + Sbjct: 188 LGSTGPEHNKVFTSQVMLGNTVIGEGSGRTKKDSEQHAAKQALAQL 233 >gi|293366802|ref|ZP_06613478.1| ribonuclease III [Staphylococcus epidermidis M23864:W2(grey)] gi|291319103|gb|EFE59473.1| ribonuclease III [Staphylococcus epidermidis M23864:W2(grey)] gi|329736553|gb|EGG72819.1| ribonuclease III [Staphylococcus epidermidis VCU045] Length = 245 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 5/225 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 +++ K +G F N L ++A +HSS + + E ERLEFLGD +L L +S LF Sbjct: 16 KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + ALYLD G++ TF +K D KT+ QE+ H++ Y++ Sbjct: 136 AFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIK 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H FT V + A A+G +K+ +EQ AA + K Sbjct: 196 EEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYKLMK 240 >gi|127511987|ref|YP_001093184.1| ribonuclease III [Shewanella loihica PV-4] gi|189043350|sp|A3QBS7|RNC_SHELP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|126637282|gb|ABO22925.1| RNAse III [Shewanella loihica PV-4] Length = 225 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 120/227 (52%), Gaps = 6/227 (2%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + L + +GY F +LLE+ALTH S + + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNLPRLGRILGYQFQQIALLEQALTHRSAA---SKHNERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV + +++A+E L ++++ K SI AD + Sbjct: 58 YHQFPKATEGDLSRMRATLVCGKMLAEIAKEFKLGDYLKLGPGELKSGGFRRESILADAM 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLD IE T V ++K R ++D KT LQE P Y V Sbjct: 118 EAIIGAIYLDADIETCRTLVLNWYKSRLAVIEPVNQKDPKTLLQEHLQGFKQPLPVYTVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 SG H FTV ++ L A G+ S+R AEQ+AAAEVL+R Sbjct: 178 NISGEAHAQTFTVECKVEQLKEAVIGVANSRRKAEQIAAAEVLERIK 224 >gi|331084978|ref|ZP_08334065.1| ribonuclease III [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408678|gb|EGG88143.1| ribonuclease III [Lachnospiraceae bacterium 9_1_43BFAA] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 114/225 (50%), Gaps = 8/225 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60 R LEK+IGY F + LL+KA+ HSS ++ Q+ ERLEFLGD +L L S LF Sbjct: 3 RLKELEKKIGYTFQKKELLQKAMMHSSYTNEKHMKKQDCNERLEFLGDAVLELTTSEALF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 S EGEL+ S+V + VA+EL L S++ + SI +D VE Sbjct: 63 FDNPSMPEGELTKTRASIVCEPALAFVAKELMLGSYLLLGKGEEATGGRQRDSITSDAVE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI A+YLDGG A F+ K+ K D+KT LQE AKF Y + Sbjct: 123 ALIGAIYLDGGFASAKEFIQKFILSDLENK-KLFYDSKTILQEMVQAKFTENVRYVLEKE 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKR 222 GPDH+ FT I G +K+A+EQ AA + +L++ Sbjct: 182 EGPDHNKSFTTSAYIGEECYGTGSGRTKKASEQEAAYQTILMLRK 226 >gi|152978261|ref|YP_001343890.1| ribonuclease III [Actinobacillus succinogenes 130Z] gi|189043288|sp|A6VLV8|RNC_ACTSZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|150839984|gb|ABR73955.1| Ribonuclease III [Actinobacillus succinogenes 130Z] Length = 224 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 120/223 (53%), Gaps = 6/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L+ +IGY F+N +LL++ALTH S + + ERLEFLGD IL L I L+ F Sbjct: 4 LDRLQHKIGYEFSNLTLLKQALTHRSAAKVH---NERLEFLGDAILNLTIGEALYLQFPH 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGELS +LV +T +++A + DL +++ + + K SI AD VE++I A Sbjct: 61 CNEGELSRMRATLVREKTLAELAHQFDLGNYMALGAGELKSGGFRRASILADCVEAIIGA 120 Query: 126 LYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + LD + V ++++ R ++ G+ ++D KT LQE+ K P Y VT G Sbjct: 121 MSLDSNLPKTMEIVRRWYEVLLRDIQPGENQKDPKTRLQEYLQGKRLALPAYNVTDIQGE 180 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 H FTV + L G+ S+R AEQVAA ++LK I Sbjct: 181 AHCQTFTVECHVENLDRTFVGVAGSRRKAEQVAAEQILKVLDI 223 >gi|254293934|ref|YP_003059957.1| ribonuclease III [Hirschia baltica ATCC 49814] gi|254042465|gb|ACT59260.1| ribonuclease III [Hirschia baltica ATCC 49814] Length = 255 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 85/220 (38%), Positives = 131/220 (59%), Gaps = 2/220 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 +T+++ G F + SLL++A TH+S S ERLEFLGDR+LGL+ ++ L F+ Sbjct: 33 ATIQEIAGIKFKDVSLLDRAFTHTSAVPGEAADWSNERLEFLGDRVLGLVAASQLITRFE 92 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ R N+LVS +TC+++A E++L ++ + + + S+ A+V E+LI Sbjct: 93 KEREGGLAPRLNALVSRDTCAKIAAEINLGQYLILDASESSAGGTTKPSLLANVTEALIG 152 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLD G+ + F+ KYWK+ RD K+ LQEWA P Y+ R+GPD Sbjct: 153 AIYLDAGLAASERFIVKYWKEYFKTLTDVPRDPKSALQEWAQGDGRPAPNYENIDRTGPD 212 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FTV V + G+ PA+G SK+ A++ AA+ +L G Sbjct: 213 HAPVFTVEVRVEGVRPAKGEGSSKQEAQRAAASAMLNNVG 252 >gi|227488592|ref|ZP_03918908.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867] gi|227091486|gb|EEI26798.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867] Length = 250 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 4/219 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + ++ L +++G + LL ALTH S ++ + ERLEFLGD +LG ++ LF Sbjct: 20 VDHAPLLEKLGTTVS-PELLRLALTHRSFANENGGLPNNERLEFLGDSVLGCSVAWKLFE 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S+ E +S +VS + +ARE+ L +I + SI AD E+ Sbjct: 79 TYPSSPESVISKMRARIVSRFGLADIAREIGLGKYILLGRGEILTDGRDKDSILADTTEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A++L+ G E A + + ++ + S L + A+ + Sbjct: 139 IFGAIFLEHGFEAARHTILTLFHEKIVHASSDSIHTDWKTLLQERAAERKLPMPEYEASF 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +GPDHD FT I G G +K+AAEQ+AA + Sbjct: 199 TGPDHDRFFTATAIIDGKVVGTGQGHNKKAAEQLAAKQA 237 >gi|163790810|ref|ZP_02185235.1| Ribonuclease (RNase III) [Carnobacterium sp. AT7] gi|159873878|gb|EDP67957.1| Ribonuclease (RNase III) [Carnobacterium sp. AT7] Length = 231 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 109/225 (48%), Gaps = 5/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M + L+ + G F + S LE+A THSS + ++ ER+EFLGD +L L +S Sbjct: 1 MDEAFLTHLKTKFGLVFQDLSYLEEAFTHSSYVNEHRNLKLKDNERIEFLGDAVLELTVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + + EG+L+ ++V + SQ A+E + FIR+ + ++ Sbjct: 61 RFLYELYPNVPEGKLTRLRATIVCEASFSQFAKEYEFDQFIRLGKGEERMNGRKRPALLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 D+ ES + ALYLD G++ F+++ + D KT LQE+ K + EY Sbjct: 121 DLFESFVGALYLDQGLDGVLFFLEQTIFPKIKSGAFSHVMDHKTNLQEFLQQKGEIEIEY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + GP H F V V G QG +K+AAEQVAA L Sbjct: 181 NLVDEIGPAHQKAFVVEVLAEGQLLGQGQGKTKKAAEQVAAENAL 225 >gi|83593187|ref|YP_426939.1| RNAse III [Rhodospirillum rubrum ATCC 11170] gi|83576101|gb|ABC22652.1| RNAse III [Rhodospirillum rubrum ATCC 11170] Length = 221 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 83/219 (37%), Positives = 119/219 (54%), Gaps = 2/219 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L+ + + F + +LL +ALTH S + SYERLEFLGDR+LGL+++ +L+ F Sbjct: 4 DLNALQIALDHRFTDPALLARALTHRS--REGRPSYERLEFLGDRVLGLVVAEMLYARFP 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG L+ R SLV +T ++VA+ + L + +S + F S+ DV E+++ Sbjct: 62 TEDEGALARRHASLVRQDTVARVAQSVGLGELMELSRGEEELGGQFNPSLLCDVCEAVLG 121 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 AL+LDGG A FV+ W + +DAKT LQEWA + P Y V R GP Sbjct: 122 ALHLDGGYAKAQRFVEARWAPLMAEDLTPPKDAKTALQEWAQGRGLPLPTYAVEGRDGPP 181 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H P FTV V + + SKR AEQ AA +L R Sbjct: 182 HKPMFTVSVTVKDNGSESALGASKRLAEQAAAQRLLDRL 220 >gi|85860141|ref|YP_462343.1| ribonuclease III [Syntrophus aciditrophicus SB] gi|85723232|gb|ABC78175.1| ribonuclease III [Syntrophus aciditrophicus SB] Length = 240 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 109/224 (48%), Gaps = 6/224 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 LE + AF + +LL+ AL H S + ERLEFLGD +L L IS LL Sbjct: 9 LKKLESHLSCAFRDITLLDNALVHRSYVNENPSLSFADNERLEFLGDAVLELCISDLLMK 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+LS S+V+ + +++A++ + SFI + SI A+ +E+ Sbjct: 69 AFPDYSEGQLSKLRASVVNEQPLAELAKKCRIGSFILLGKGEESSGGRSKPSILANTMEA 128 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA++LDGG + A FV + + +D KT LQE + +F P Y++ Sbjct: 129 ITAAVFLDGGFDRAYEFVRRLFTPLIEEGNRSATYKDYKTTLQELSQNRFREIPRYRLIG 188 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F + I G+ G SK+ AEQ AA + L Sbjct: 189 EYGPDHDKLFESGLSIPGIIETTGKGKSKKEAEQHAAHKALDEL 232 >gi|254439178|ref|ZP_05052672.1| ribonuclease III [Octadecabacter antarcticus 307] gi|198254624|gb|EDY78938.1| ribonuclease III [Octadecabacter antarcticus 307] Length = 229 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 91/217 (41%), Positives = 124/217 (57%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + RIG+ FA L +A+THSS+S ++ +RLEFLGDR+LGL++S L + Sbjct: 7 LREFQDRIGHTFAKPDQLIRAVTHSSMSSPNRDDNQRLEFLGDRVLGLVMSEALLQADVN 66 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EG L+ RFN+LV ETC+ VARE+DL + +++ ++ AD +E++IAA Sbjct: 67 APEGLLAPRFNALVRKETCADVAREIDLGAVLKLGRSEMLTGGRRKEALLADAMEAVIAA 126 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +Y+D G +VA V W R K RD KT LQEWA + P Y T RSGPDH Sbjct: 127 VYIDAGFDVARERVVALWGDRITNVEKDARDPKTALQEWAQGQGEPPPSYIETARSGPDH 186 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P FT+ V + G SKR AEQ AA +L+R Sbjct: 187 APIFTIEVRLQSGPTDIGQAPSKRQAEQAAAKSLLER 223 >gi|258645853|ref|ZP_05733322.1| ribonuclease III [Dialister invisus DSM 15470] gi|260403226|gb|EEW96773.1| ribonuclease III [Dialister invisus DSM 15470] Length = 249 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 68/216 (31%), Positives = 103/216 (47%), Gaps = 6/216 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 N LL ALTH+S ++ ++ ERLEFLGD +L L + LF F EG Sbjct: 23 DIPVHNMELLNVALTHTSYANEHRNLKVHDNERLEFLGDAVLDLAVGDYLFRRFPEWPEG 82 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +L+ S+V C++ A + ++ + SI + ES+I A+YLD Sbjct: 83 DLTRAKASVVCKPACAECAANFHVGDYMLLGRGEEMSGGRTRVSILGNAFESVIGAVYLD 142 Query: 130 GGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G EVA F+ + ++ G + D K++LQE A V Y+V GPDHD Sbjct: 143 NGYEVAAKFILGHMQKFLDLVDQGIYDHDYKSDLQEIAQKNGDVDIRYEVVRDEGPDHDK 202 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + I+G A G+ +K+ A Q AA E ++R Sbjct: 203 TIWMELFINGKALGTGIGKNKKEAAQNAAKEAIERL 238 >gi|257466297|ref|ZP_05630608.1| ribonuclease III [Fusobacterium gonidiaformans ATCC 25563] Length = 232 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 115/230 (50%), Gaps = 7/230 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 + LE RI Y F +++LL+ AL H S + ++ + E+LE LGD +LGL+++ Sbjct: 1 MSKNLVDLEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLVVAE 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ + KEG L+ + VS + ++R+L + ++ +S SI D Sbjct: 61 YLYQKYPEEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSILGD 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEY 175 V E+++ A+YLD G A +V + K F D KT LQE+ K+ P+Y Sbjct: 121 VFEAILGAIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDIPKY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + GPDH F + V+I A+ +K+ AEQ+AA ++ K G+ Sbjct: 181 TLVGEEGPDHRKLFEMQVQIQNN-IAKAKGTNKKVAEQMAAKQLCKELGV 229 >gi|116514343|ref|YP_813249.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093658|gb|ABJ58811.1| RNAse III [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 231 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 6/229 (2%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ L+++ G F + LLE+A THSS + +YE+LEFLGD +L + Sbjct: 1 MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYLNENPGKTLGNYEKLEFLGDAVLEFTV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ HF EGEL+ +++V E S+VA + I + K ++ Sbjct: 61 SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 DV E+ AL+LD GIE F+ + + + G Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFLSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIE 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P F V V + G A G +K+ AEQ AA+ L+ Sbjct: 181 YRVLNESQQP-PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228 >gi|145635204|ref|ZP_01790908.1| ribonuclease III [Haemophilus influenzae PittAA] gi|229845360|ref|ZP_04465491.1| ribonuclease III [Haemophilus influenzae 6P18H1] gi|145267483|gb|EDK07483.1| ribonuclease III [Haemophilus influenzae PittAA] gi|229811668|gb|EEP47366.1| ribonuclease III [Haemophilus influenzae 6P18H1] Length = 227 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 121/231 (52%), Gaps = 11/231 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L LE++IGY F N +LL++ALTH S + + ERLEFLGD IL I+ L+ Sbjct: 1 MNHLD--RLERKIGYCFNNIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ +L ++ + S K+ SI AD VE Sbjct: 56 HQFPRCNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD G+ V + +++Q +K G ++DAKT LQE+ K P Y+V Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVV 175 Query: 179 FRSGPDHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G H FTV ++ S+R AEQ AA ++LK I Sbjct: 176 NIQGEAHCQIFTVKCKVKSAEKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226 >gi|291539668|emb|CBL12779.1| RNAse III [Roseburia intestinalis XB6B4] Length = 228 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 69/209 (33%), Positives = 106/209 (50%), Gaps = 5/209 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + L+ RIGY F LL +ALTHSS ++ ERLEFLGD +L ++ S L+ Sbjct: 3 KLQELQNRIGYTFEKEGLLRQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSDFLY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ EG+L+ S+V T + RE+DL ++ + + SI +D +E Sbjct: 63 RNYPDLPEGDLTKLRASIVCEPTLALCTREMDLGDYLLLGKGENQTGGRKRKSILSDALE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 S+I A+YLDGG E A F+ K+ ++ K D+KT LQE + + Y++ Sbjct: 123 SVIGAIYLDGGFEPAKKFIHKFIL-TDIEHKKLFYDSKTILQEVVQGNYKESLHYELISE 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDHD +F+V I G +K+ Sbjct: 182 EGPDHDKQFSVEARIGDKVIGSGTGHTKK 210 >gi|188581484|ref|YP_001924929.1| ribonuclease III [Methylobacterium populi BJ001] gi|179344982|gb|ACB80394.1| Ribonuclease III [Methylobacterium populi BJ001] Length = 256 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 89/222 (40%), Positives = 121/222 (54%), Gaps = 2/222 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63 + LE RIG+ F + +LL ALTH S + SY+RLEFLGDR+LGL ++ L+ Sbjct: 24 LAVLEARIGHVFTDPTLLPLALTHVSKAGPSGRVGSYQRLEFLGDRVLGLAVAETLYRAL 83 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A+EGELS R LV ETC+ VA ++ + + + +I ADV E+++ Sbjct: 84 PDAEEGELSRRLAGLVRRETCAAVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAIL 143 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++LD G E V + ++ RDAK+ LQEWA A+ P Y+V RSGP Sbjct: 144 GAVFLDAGYEATRAIVQRSFRPGEDTGAPRGRDAKSALQEWAMARSLAIPVYEVVERSGP 203 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 DH P F + V + + P G SKR AEQ AA VL RE I Sbjct: 204 DHAPVFRIAVRVESIEPGYGEGASKRVAEQEAARAVLDRENI 245 >gi|224368198|ref|YP_002602361.1| two domain fusion protein Includes: metal-dependent phosphoesterase / ribonuclease III [Desulfobacterium autotrophicum HRM2] gi|223690914|gb|ACN14197.1| two domain fusion protein Includes: metal-dependent phosphoesterase / ribonuclease III [Desulfobacterium autotrophicum HRM2] Length = 520 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 114/226 (50%), Gaps = 7/226 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLF 60 R LEK +G+ FANR LLE AL HSS + Q + +RLEF+GD +LGL I +L Sbjct: 292 RLEILEKNLGHTFANRELLENALRHSSYVNELQANQVPDNQRLEFMGDAVLGLTIGQILM 351 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG LS +LVS + +AR++DL FIR+ R S SI AD E Sbjct: 352 EEHPGMNEGSLSKARAALVSEPALASMARQIDLGRFIRLGKGERLSRGSEKNSILADAFE 411 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++AA+YLD G + V + + + D K+ LQE+ K P Y + Sbjct: 412 AVMAAIYLDCGFKQTCALVKEQFISQIKLINSAPEIEDFKSMLQEFVQEKGNTPPCYTIH 471 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDHD F++ V+ + + G SK+AAEQ AA LK Sbjct: 472 REFGPDHDKTFSICVKACDIE-SMGSGKSKKAAEQHAAQNALKSLK 516 >gi|27467826|ref|NP_764463.1| RNase III [Staphylococcus epidermidis ATCC 12228] gi|251810663|ref|ZP_04825136.1| RNase III [Staphylococcus epidermidis BCM-HMP0060] gi|282876335|ref|ZP_06285202.1| ribonuclease III [Staphylococcus epidermidis SK135] gi|32129970|sp|Q8CPI1|RNC_STAES RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|27315371|gb|AAO04505.1|AE016747_2 RNase III [Staphylococcus epidermidis ATCC 12228] gi|251805823|gb|EES58480.1| RNase III [Staphylococcus epidermidis BCM-HMP0060] gi|281295360|gb|EFA87887.1| ribonuclease III [Staphylococcus epidermidis SK135] gi|329736334|gb|EGG72606.1| ribonuclease III [Staphylococcus epidermidis VCU028] Length = 245 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 5/225 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 +++ K +G F N L ++A +HSS + + E ERLEFLGD +L L +S LF Sbjct: 16 KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + ALYLD G++ TF +K D KT+ QE+ H++ Y++ Sbjct: 136 AFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIK 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H FT V + A A+G +K+ +EQ AA + K Sbjct: 196 EEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYKLMK 240 >gi|308234556|ref|ZP_07665293.1| ribonuclease III [Atopobium vaginae DSM 15829] gi|328944154|ref|ZP_08241619.1| ribonuclease III [Atopobium vaginae DSM 15829] gi|327492123|gb|EGF23897.1| ribonuclease III [Atopobium vaginae DSM 15829] Length = 233 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 110/224 (49%), Gaps = 3/224 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 R E+ I Y F N+ L++ A+TH S SYERLEFLGD ILG +++T +F Sbjct: 6 RIKHAEQIIEYTFENKRLIQAAITHPSAVEGLPVSASYERLEFLGDSILGAIVATDMFEK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ SLVS +T S VA EL + I + TS +V ESL Sbjct: 66 FPGMDEGALTRMKISLVSGKTLSMVAEELGIGECIIFGDSEKGTGVRGFTSALENVYESL 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + ALYL+ G E F+ + + K K+ LQE +F + P Y++ + Sbjct: 126 VGALYLEAGYEPTVKFIRRTLTPYMVPELAKHPISPKSRLQEVCQKRFHIAPVYELEDET 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GP H P+FT V + G +G SK+ ++ +AA L + + Sbjct: 186 GPAHAPQFTSAVFVDGELMGRGTGSSKKESQSIAALSALDKLDV 229 >gi|118594601|ref|ZP_01551948.1| ribonuclease III [Methylophilales bacterium HTCC2181] gi|118440379|gb|EAV47006.1| ribonuclease III [Methylophilales bacterium HTCC2181] Length = 243 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 115/227 (50%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ + +E +G+ F +++L++ ALTH S E+ ERLEFLGD IL +++ LL+ Sbjct: 15 MNSNQIEQIESILGHTFKDKALIKIALTHRSA---KGENNERLEFLGDGILNFIVAELLY 71 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+LS + LV T +A+ L + F+ + K SI AD +E Sbjct: 72 VRFQQLSEGDLSRLRSQLVKESTLCDIAKNLTIGDFLLLGEGELKSAGWRRPSILADSLE 131 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD GI +F+++ + + + K +D K+ LQE+ K PEY V Sbjct: 132 AIIAAIYLDDGIGKVKSFIERRFNEHIITIDPNKIHKDDKSLLQEFLQGKKIAIPEYTVI 191 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREG 224 G H F V I L + G S++ AEQ AA L G Sbjct: 192 EIEGEPHAQVFEVKCRIPKLNIEKIGKGPSRKIAEQNAANLALIYLG 238 >gi|308048449|ref|YP_003912015.1| RNAse III [Ferrimonas balearica DSM 9799] gi|307630639|gb|ADN74941.1| RNAse III [Ferrimonas balearica DSM 9799] Length = 224 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 122/226 (53%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+ +GY F + +LL +ALTH S + + ERLE+LGD +L +I+ L+ Sbjct: 1 MNNQKLTRLQDALGYQFKDIALLNQALTHRSAA---SQHNERLEYLGDAVLSFVIAEALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+++ SLV T +++ REL L I++ K SI AD VE Sbjct: 58 LRFPKVAEGDMTRMRASLVKGVTLAELGRELALGDVIKLGPGELKSGGFRRESILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+YLDGGIEV + + ++ R ++D KT LQE A+ PEY+V Sbjct: 118 AILGAVYLDGGIEVCKPLILRLYQARLDIIEPGIRQKDPKTRLQEHLQARKQPLPEYEVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ RFTV +S L P G S+R AEQ AA+ VL++ Sbjct: 178 SVEGDAHNQRFTVRCSVSALAEPMIGNGSSRRKAEQDAASRVLEQL 223 >gi|313896309|ref|ZP_07829862.1| ribonuclease III [Selenomonas sp. oral taxon 137 str. F0430] gi|320529287|ref|ZP_08030377.1| ribonuclease III [Selenomonas artemidis F0399] gi|312975108|gb|EFR40570.1| ribonuclease III [Selenomonas sp. oral taxon 137 str. F0430] gi|320138461|gb|EFW30353.1| ribonuclease III [Selenomonas artemidis F0399] Length = 238 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 5/224 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNH 62 L +G AF+N +LL++ALTH S ++ ++S ERLEFLGD +L L ST L+ H Sbjct: 13 LERLAAHMGVAFSNIALLDEALTHPSYANESRDSIPHNERLEFLGDAVLELASSTYLYKH 72 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGEL+ SLV ++T +++AR L L +R+ + + + +V E++ Sbjct: 73 FPQCSEGELTKMRASLVQSDTLARLARRLHLGRHLRLGHGELRGGGADRQNNLENVFEAV 132 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD--AKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLD G E A +V + KT LQE ++ Y++ Sbjct: 133 IGAVYLDRGWESARDYVCTQLVPEIGNVQPAQVRCDYKTTLQEHVQKDRHMSVAYELVGE 192 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGPDHD RFT V + G +G SK+ AEQ AAA L + G Sbjct: 193 SGPDHDKRFTTRVLVGGETLGEGTGPSKKKAEQQAAAHALSKLG 236 >gi|227824522|ref|ZP_03989354.1| ribonuclease [Acidaminococcus sp. D21] gi|226905021|gb|EEH90939.1| ribonuclease [Acidaminococcus sp. D21] Length = 238 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 108/231 (46%), Gaps = 10/231 (4%) Query: 1 MSALRYSTLEK---RIGYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILG 52 M R LE R+G + SL++ ALTHSS ++ +E +RLEFLGD +L Sbjct: 1 MRKERKEALESFLVRLGVTMQDLSLMDTALTHSSYAYECKEKVVPEFNQRLEFLGDSVLS 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L++ST L+ + EG LS LV ET +++A++L + ++ + + Sbjct: 61 LVVSTHLYLAYPEMDEGALSKFRAFLVCEETLAELAQDLAIGDYLLLGRGECHMGGRYNP 120 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFG 170 SI AD ES++ A YLD G E + + + + RD KT QE A+ Sbjct: 121 SILADAFESVMGAYYLDAGYEKVRDLLTRVLIDKIPELTADGIDRDYKTRFQELIQAQGQ 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y+ GP H+ F + V + G +K+ AEQ AA E L+ Sbjct: 181 TDIHYEEAGFDGPPHNRTFFMKVIVGEKTYGTGSGRTKKLAEQRAAREALR 231 >gi|209695943|ref|YP_002263873.1| ribonuclease III [Aliivibrio salmonicida LFI1238] gi|208009896|emb|CAQ80209.1| ribonuclease III (RNase III) [Aliivibrio salmonicida LFI1238] Length = 223 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 73/218 (33%), Positives = 109/218 (50%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE++IGY F + L+ ALTH S ERLEFLGD IL +++ L++ F Sbjct: 5 LQRLERKIGYKFNDEGFLKLALTHRSA---NGTHNERLEFLGDSILSFVVADELYHRFPK 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG++S +LV T +++ RE +L ++ + K SI AD VE++I Sbjct: 62 VDEGDMSRMRATLVRGHTLAELGREFELGDYLFLGPGELKSGGFRRDSILADAVEAIIGG 121 Query: 126 LYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD EV + + +++ G ++D KT LQE+ + P Y VT G Sbjct: 122 IYLDSDTEVIRRIILAWYKTRLDSIEPGISQKDPKTRLQEYLQGRRKPLPTYTVTKIKGE 181 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220 H+ FT+ ++GL P G S+R AEQ AA L Sbjct: 182 AHNQEFTIECIVAGLDKPVIGKGSSRRKAEQSAADIAL 219 >gi|166154508|ref|YP_001654626.1| ribonuclease III [Chlamydia trachomatis 434/Bu] gi|255348658|ref|ZP_05380665.1| ribonuclease III [Chlamydia trachomatis 70] gi|255503198|ref|ZP_05381588.1| ribonuclease III [Chlamydia trachomatis 70s] gi|301335768|ref|ZP_07224012.1| ribonuclease III [Chlamydia trachomatis L2tet1] gi|238687367|sp|B0B7L3|RNC_CHLT2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|165930496|emb|CAP03989.1| ribonuclease III [Chlamydia trachomatis 434/Bu] gi|289525336|emb|CBJ14812.1| ribonuclease III [Chlamydia trachomatis Sweden2] gi|296434887|gb|ADH17065.1| ribonuclease III [Chlamydia trachomatis E/150] gi|296438607|gb|ADH20760.1| ribonuclease III [Chlamydia trachomatis E/11023] Length = 231 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 3/220 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLF 60 + +E ++ + F++ LL ALTH S + + +E ERLEFLGD +LGL+++ LF Sbjct: 5 VDIQAIESKLNFTFSHPRLLITALTHPSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHLF 64 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + EG LS +LV+AE C + ++L L + + + S A++ E Sbjct: 65 LLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLFE 124 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +++ A+YLDGG+ A + + + K LQ++ V P YK Sbjct: 125 AILGAVYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALPW 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 D P + V V ++G +G SK+ AE++AA + L Sbjct: 185 KSEDGSPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224 >gi|255506876|ref|ZP_05382515.1| ribonuclease III [Chlamydia trachomatis D(s)2923] Length = 231 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 3/220 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLF 60 + +E ++ + F++ LL ALTH S + + +E ERLEFLGD +LGL+++ LF Sbjct: 5 VDIQAIESKLNFTFSHPKLLITALTHPSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHLF 64 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + EG LS +LV+AE C + ++L L + + + S A++ E Sbjct: 65 LLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLFE 124 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +++ A+YLDGG+ A + + + K LQ++ V P YK Sbjct: 125 AILGAVYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALPW 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 D P + V V ++G +G SK+ AE++AA + L Sbjct: 185 KSEDGSPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224 >gi|30179749|sp|O69161|RNC_BRAJA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 250 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 100/222 (45%), Positives = 144/222 (64%), Gaps = 3/222 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 + LE RIG++FA+ +LL + +TH S S + +SY+RLEFLGD +LGL++S +L++ F Sbjct: 23 AALEARIGHSFADPNLLMQGITHVSALKSGRKRGDSYQRLEFLGDHVLGLVVSDMLYHAF 82 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +A EGELS R LV E+C+ VA+ L L I++ S S+ D+ E++I Sbjct: 83 PNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSADARLRKSVLGDICEAVI 142 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++LDGG A FV + W +R K + RD KT LQEWA K TP Y+ R+GP Sbjct: 143 GAIFLDGGHAAAAEFVKRNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 202 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 HDP+F V V++ GLAPA+G+ SKRAAE+VAA+ +++REG+ Sbjct: 203 HHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASVMIEREGV 244 >gi|27380172|ref|NP_771701.1| RNase III [Bradyrhizobium japonicum USDA 110] gi|27353326|dbj|BAC50326.1| RNase III [Bradyrhizobium japonicum USDA 110] Length = 273 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 100/222 (45%), Positives = 144/222 (64%), Gaps = 3/222 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 + LE RIG++FA+ +LL + +TH S S + +SY+RLEFLGD +LGL++S +L++ F Sbjct: 46 AALEARIGHSFADPNLLMQGITHVSALKSGRKRGDSYQRLEFLGDHVLGLVVSDMLYHAF 105 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +A EGELS R LV E+C+ VA+ L L I++ S S+ D+ E++I Sbjct: 106 PNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSADARLRKSVLGDICEAVI 165 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++LDGG A FV + W +R K + RD KT LQEWA K TP Y+ R+GP Sbjct: 166 GAIFLDGGHAAAAEFVKRNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 225 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 HDP+F V V++ GLAPA+G+ SKRAAE+VAA+ +++REG+ Sbjct: 226 HHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASVMIEREGV 267 >gi|195941524|ref|ZP_03086906.1| ribonuclease III (rnc) [Borrelia burgdorferi 80a] gi|216264636|ref|ZP_03436628.1| ribonuclease III [Borrelia burgdorferi 156a] gi|218249229|ref|YP_002375205.1| ribonuclease III [Borrelia burgdorferi ZS7] gi|221217995|ref|ZP_03589462.1| ribonuclease III [Borrelia burgdorferi 72a] gi|223889463|ref|ZP_03624049.1| ribonuclease III [Borrelia burgdorferi 64b] gi|224532354|ref|ZP_03672984.1| ribonuclease III [Borrelia burgdorferi WI91-23] gi|224533390|ref|ZP_03673984.1| ribonuclease III [Borrelia burgdorferi CA-11.2a] gi|225548949|ref|ZP_03769926.1| ribonuclease III [Borrelia burgdorferi 94a] gi|225549922|ref|ZP_03770883.1| ribonuclease III [Borrelia burgdorferi 118a] gi|226320458|ref|ZP_03796024.1| ribonuclease III [Borrelia burgdorferi 29805] gi|226321403|ref|ZP_03796930.1| ribonuclease III [Borrelia burgdorferi Bol26] gi|215981109|gb|EEC21916.1| ribonuclease III [Borrelia burgdorferi 156a] gi|218164417|gb|ACK74478.1| ribonuclease III [Borrelia burgdorferi ZS7] gi|221192301|gb|EEE18521.1| ribonuclease III [Borrelia burgdorferi 72a] gi|223885149|gb|EEF56253.1| ribonuclease III [Borrelia burgdorferi 64b] gi|224512661|gb|EEF83032.1| ribonuclease III [Borrelia burgdorferi WI91-23] gi|224513555|gb|EEF83912.1| ribonuclease III [Borrelia burgdorferi CA-11.2a] gi|225369381|gb|EEG98833.1| ribonuclease III [Borrelia burgdorferi 118a] gi|225370552|gb|EEG99988.1| ribonuclease III [Borrelia burgdorferi 94a] gi|226233199|gb|EEH31951.1| ribonuclease III [Borrelia burgdorferi Bol26] gi|226234100|gb|EEH32815.1| ribonuclease III [Borrelia burgdorferi 29805] gi|312147960|gb|ADQ30619.1| ribonuclease III [Borrelia burgdorferi JD1] gi|312148997|gb|ADQ29068.1| ribonuclease III [Borrelia burgdorferi N40] Length = 245 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59 + S + + F+N LL AL HSS S+ + + ERLEFLGD +L L+I+ L Sbjct: 15 KSQLSKFLENLSIDFSNFDLLNTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EGELS + +VS ++ S +ARE++L S+I + + I AD + Sbjct: 75 YKTYPNKSEGELSKARSYIVSEDSLSNIAREINLGSYILLGRGEESNDGRNKKGILADAI 134 Query: 120 ESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + A+YLD G A FV R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 135 EAFVGAIYLDSGFSRATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V + + + G SK+ AE AA LK Sbjct: 195 DKEIGPDHDKVFCVELYVGENFISNGKGKSKKEAEMRAAEVALKAM 240 >gi|319774962|ref|YP_004137450.1| Ribonuclease III [Haemophilus influenzae F3047] gi|329123136|ref|ZP_08251706.1| ribonuclease III [Haemophilus aegyptius ATCC 11116] gi|317449553|emb|CBY85758.1| Ribonuclease III [Haemophilus influenzae F3047] gi|327471691|gb|EGF17133.1| ribonuclease III [Haemophilus aegyptius ATCC 11116] Length = 227 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 121/231 (52%), Gaps = 11/231 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L LE++IGY F + LL++ALTH S + + ERLEFLGD IL I+ L+ Sbjct: 1 MNHLD--RLERKIGYCFNDIVLLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR+ +L ++ + S K+ SI AD VE Sbjct: 56 HQFPRCNEGELSRMRATLVRESTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD G+ V + +++Q +K G ++DAKT LQE+ K P Y+V Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVI 175 Query: 179 FRSGPDHDPRFTVVVEIS--GLA--PAQGMDCSKRAAEQVAAAEVLKREGI 225 G H FTV ++ G S+R AEQ AA ++LK I Sbjct: 176 NIQGEAHCQIFTVKCKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226 >gi|254283270|ref|ZP_04958238.1| ribonuclease III [gamma proteobacterium NOR51-B] gi|219679473|gb|EED35822.1| ribonuclease III [gamma proteobacterium NOR51-B] Length = 222 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 5/222 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 +R +LE+ IGY F + +LL++ALTH S S + + ERLEFLGD ++ +++ LF F Sbjct: 1 MRRQSLEQAIGYHFRDSTLLQRALTHRSAS---RANNERLEFLGDSVINHIVAEALFLKF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EG+L+ LV E + +A L+LA + + + RK SI AD VE++ Sbjct: 58 PDADEGQLTRLRAILVRGEYLAGLAHGLELADALILGAGERKSGGRQRRSILADAVEAIA 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+ +D V +++ + + +D KT LQEW A+ P Y + G Sbjct: 118 GAMLIDSEFATVRKVVLQWYHEGLDEITLDAVKDPKTRLQEWLQARGEELPSYDLVQVDG 177 Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223 DH FTV +++G A G S+R AEQ AA L+R Sbjct: 178 EDHRQSFTVTCQLAGRDLALTGRGSSRRRAEQAAAKATLERL 219 >gi|319760660|ref|YP_004124598.1| ribonuclease III [Candidatus Blochmannia vafer str. BVAF] gi|318039374|gb|ADV33924.1| ribonuclease III [Candidatus Blochmannia vafer str. BVAF] Length = 231 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS+L ++ L+ ++GY F LLE ALTH S S+ + ERLEFLGD IL +++ LL+ Sbjct: 1 MSSLDFNVLQGKLGYFFCKLDLLELALTHRSFSN---QHNERLEFLGDAILNYVVANLLY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ EG++S ++LV ++T ++A+E ++ ++++ K+ SI ++ VE Sbjct: 58 HRYNCISEGDMSRIRSNLVCSKTLVRLAKEFNVGEYLKLGQGELKNGGISRESILSNTVE 117 Query: 121 SLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I ++LD ++ A+ ++D KT LQE+ P Y V Sbjct: 118 AIIGGVFLDSNMKTVEILINNWYLCHLNAINFMNKQKDPKTRLQEYLQRHGCPLPIYYVN 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223 G H FT+ +IS L P+ G S + AEQ AA LK Sbjct: 178 RIQGKAHSQMFTIFCQISQLTDPSIGYGSSIQKAEQSAAENALKIL 223 >gi|254561469|ref|YP_003068564.1| ribonuclease III [Methylobacterium extorquens DM4] gi|254268747|emb|CAX24708.1| ribonuclease III [Methylobacterium extorquens DM4] Length = 256 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 124/222 (55%), Gaps = 2/222 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63 + LE RIG+ FA+ +LL ALTH S + SY+RLEFLGDR+LGL ++ L+ Sbjct: 24 LAVLEARIGHVFADPTLLPLALTHVSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKAL 83 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A+EGELS R LV ETC+ VA ++ + + + +I ADV E+++ Sbjct: 84 PGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAIL 143 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++LD G E V + ++ + RDAK+ LQEWA A+ P Y+V RSGP Sbjct: 144 GAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSGP 203 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 DH P F + + G+ P G SKR AEQ AA VL REGI Sbjct: 204 DHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245 >gi|240138862|ref|YP_002963337.1| ribonuclease III [Methylobacterium extorquens AM1] gi|240008834|gb|ACS40060.1| ribonuclease III [Methylobacterium extorquens AM1] Length = 256 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 124/222 (55%), Gaps = 2/222 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63 + LE RIG+ FA+ +LL ALTH S + SY+RLEFLGDR+LGL ++ L+ Sbjct: 24 LAVLEARIGHVFADPTLLPLALTHVSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKAL 83 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A+EGELS R LV ETC+ VA ++ + + + +I ADV E+++ Sbjct: 84 PGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAIL 143 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++LD G E V + ++ + RDAK+ LQEWA A+ P Y+V RSGP Sbjct: 144 GAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSGP 203 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 DH P F + + G+ P G SKR AEQ AA VL REGI Sbjct: 204 DHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245 >gi|163851697|ref|YP_001639740.1| ribonuclease III [Methylobacterium extorquens PA1] gi|163663302|gb|ABY30669.1| Ribonuclease III [Methylobacterium extorquens PA1] Length = 256 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 124/222 (55%), Gaps = 2/222 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63 + LE RIG+ FA+ +LL ALTH S + SY+RLEFLGDR+LGL ++ L+ Sbjct: 24 LAVLEARIGHVFADPTLLPLALTHVSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKAL 83 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A+EGELS R LV ETC+ VA ++ + + + +I ADV E+++ Sbjct: 84 PGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAIL 143 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++LD G E V + ++ + RDAK+ LQEWA A+ P Y+V RSGP Sbjct: 144 GAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSGP 203 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 DH P F + + G+ P G SKR AEQ AA VL REGI Sbjct: 204 DHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245 >gi|146341377|ref|YP_001206425.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS278] gi|146194183|emb|CAL78204.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS278] Length = 357 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 100/217 (46%), Positives = 137/217 (63%), Gaps = 3/217 (1%) Query: 12 RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 RIG+ FA+ SLL A TH S S +SY+RLEFLGD +LGL++S +L+ F SA E Sbjct: 134 RIGHRFADPSLLSTAFTHVSALKSSKKRGDSYQRLEFLGDHVLGLIVSDMLYRAFPSADE 193 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS R LV E+C+ VA+ L L I++ + S+ DV E++I A++L Sbjct: 194 GELSKRLADLVRKESCADVAKSLGLLDDIKLGAVGAGAGARLRKSVLGDVCEAVIGAIFL 253 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG A FV++ W +R K + RD KT LQEWA K TP Y+ R+GP HDP+ Sbjct: 254 DGGYTAAAGFVERNWTERMRKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQ 313 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F V V++ GL PA+G+ SKRAAE+VAA+ +++REG+ Sbjct: 314 FRVAVDLPGLEPAEGVGGSKRAAEKVAASVMIEREGV 350 >gi|294678827|ref|YP_003579442.1| ribonuclease III [Rhodobacter capsulatus SB 1003] gi|294477647|gb|ADE87035.1| ribonuclease III [Rhodobacter capsulatus SB 1003] Length = 228 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 125/224 (55%), Gaps = 1/224 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M A S R+G+ F L +ALTHSS+ + + +RLEFLGDR+LGL ++ L Sbjct: 1 MKIAADLSAFMDRLGHRFTTPEHLVRALTHSSLGSATRPDNQRLEFLGDRVLGLSMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F+ A EG+L+ RFN+LV ETC+ VAR++DL + +++ ++ D + Sbjct: 61 FHADGRASEGQLAPRFNALVRKETCAAVARDIDLGAVLKLGRSEMMSGGRRKDALLGDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+YLD G EVA V + W R RD KT LQEWA A+ P Y+ Sbjct: 121 EAVIAAVYLDAGFEVARALVLRLWAGRIQSVDNDARDPKTALQEWAQARGLPPPRYETLG 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 R GPDH P+F + V ++ + SKR AEQ AA +L+R Sbjct: 181 REGPDHAPQFRIAVVLASGETEEAQAGSKRNAEQAAAKALLERL 224 >gi|291277478|ref|YP_003517250.1| ribonuclease III [Helicobacter mustelae 12198] gi|290964672|emb|CBG40527.1| ribonuclease III [Helicobacter mustelae 12198] Length = 223 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 76/218 (34%), Positives = 111/218 (50%), Gaps = 4/218 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LEK I Y F N+ LL ALTH S +++ ERLE+LGD +L LLI L+ F K Sbjct: 3 NLEKAINYHFKNQDLLLTALTHKSC--KNKKNNERLEYLGDAVLDLLIGEFLYQEFPEHK 60 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS +LV+ ++ + A+ + L FI +SS+ + SI + E+LI A+Y Sbjct: 61 EGDLSKMRAALVNEQSFMRFAKAIHLQDFILISSNEETNQGREKPSILSSAFEALIGAVY 120 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 L+ G+E A + K D KT LQE A F P+Y++ GPDH Sbjct: 121 LEAGLERAKDITYHLLHKLYPKIDTQSLFTDYKTALQELTQAHFHEIPKYELLEEIGPDH 180 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F V V I A+ + SK++A+Q A ++ Sbjct: 181 CKKFKVSVYIQNQEYAKAIGTSKKSAQQNCAKIAYQKI 218 >gi|254459764|ref|ZP_05073180.1| ribonuclease III [Rhodobacterales bacterium HTCC2083] gi|206676353|gb|EDZ40840.1| ribonuclease III [Rhodobacteraceae bacterium HTCC2083] Length = 228 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 122/224 (54%), Gaps = 1/224 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + L+KRI Y F LL +A+THSS+S + +RLEFLGDR+LGL+++ L Sbjct: 1 MKLSADLQALQKRIDYRFEQGELLTEAVTHSSMSSPSRGDNQRLEFLGDRVLGLVMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 A EG+L+ R+N+LV ETC+ VAR++ L +R+ K ++ D + Sbjct: 61 LGADVKASEGQLAPRYNALVRKETCADVARDIGLGDVLRLGRSEMKSGGRRKLALLGDGM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+LIAA+Y+DGG A + + W R RD KT LQEWA ++ P Y T Sbjct: 121 EALIAAVYVDGGFNAAQALILRLWGSRITSVEADARDPKTSLQEWAQSRGLTPPAYVETA 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RSGPDH P FT+ + A SKR AEQ AA +L R Sbjct: 181 RSGPDHAPHFTIEARLDTGETASAEAGSKRLAEQAAAKALLTRM 224 >gi|238926905|ref|ZP_04658665.1| ribonuclease III [Selenomonas flueggei ATCC 43531] gi|238885139|gb|EEQ48777.1| ribonuclease III [Selenomonas flueggei ATCC 43531] Length = 238 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 76/216 (35%), Positives = 114/216 (52%), Gaps = 8/216 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLF 60 +R S + FA+ SLLE+ALTH S + +E ERLEFLGD +L L IST L+ Sbjct: 14 VRLSAF---LDVDFADLSLLEEALTHPSYVNEARERATHNERLEFLGDAVLELAISTYLY 70 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGEL+ SLV +ET +++AR L L + +R+ + + +V E Sbjct: 71 VAYPHCSEGELTKMRASLVQSETLARLARRLHLGAHLRMGRGEMLGGGAERQNNLENVFE 130 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G + A ++V + + + + + +D KT LQE+ Y+ Sbjct: 131 AVIGAVYLDRGWDAAYSYVQRQFTEEVTRLRQEHAVQDYKTMLQEYVQGHRHECIAYEQV 190 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 SGPDHD RFT+ V I +G+ SK+ AEQ Sbjct: 191 AESGPDHDKRFTMRVRIGMEVLGEGIGRSKKEAEQH 226 >gi|310828474|ref|YP_003960831.1| ribonuclease III [Eubacterium limosum KIST612] gi|308740208|gb|ADO37868.1| ribonuclease III [Eubacterium limosum KIST612] Length = 222 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 67/218 (30%), Positives = 110/218 (50%), Gaps = 4/218 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E RI Y F ++ LL+ ALTHSS S + ERLEFLGD +L L+IS L+ + Sbjct: 2 KRIEDRIAYTFKDKELLKVALTHSSHS-GTTTNNERLEFLGDAVLELIISEYLYKYNKL- 59 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+++ +++V AE+ SQ A +L+L ++ + S A+ E+++ A+ Sbjct: 60 SEGKMTKIRSNIVCAESLSQAASDLNLGEYMLLGKGEIVTGGRKRKSNLANAFEAVMGAV 119 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LD + V ++ + +D KTELQE EY + GP+ Sbjct: 120 FLDSDYDTTKKVVLGTLEKNIELALSGGLIKDYKTELQEQIQKHSDNAIEYVLEKSEGPE 179 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H+ F + + +G+ ++G SK+ AEQ AA L + Sbjct: 180 HNKTFFIDLTFNGVVVSKGTGKSKKEAEQNAAKNYLFK 217 >gi|218530503|ref|YP_002421319.1| ribonuclease III [Methylobacterium chloromethanicum CM4] gi|218522806|gb|ACK83391.1| Ribonuclease III [Methylobacterium chloromethanicum CM4] Length = 256 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 124/222 (55%), Gaps = 2/222 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63 + LE RIG+ FA+ +LL ALTH S + SY+RLEFLGDR+LGL ++ L+ Sbjct: 24 LAVLEARIGHVFADPTLLPLALTHVSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKAL 83 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A+EGELS R LV ETC+ VA ++ + + + +I ADV E+++ Sbjct: 84 PGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIRTGGRRNQTILADVCEAIL 143 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++LD G E V + ++ + RDAK+ LQEWA A+ P Y+V RSGP Sbjct: 144 GAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSGP 203 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 DH P F + + G+ P G SKR AEQ AA VL REGI Sbjct: 204 DHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245 >gi|119774017|ref|YP_926757.1| ribonuclease III [Shewanella amazonensis SB2B] gi|189043345|sp|A1S3Y1|RNC_SHEAM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|119766517|gb|ABL99087.1| RNAse III [Shewanella amazonensis SB2B] Length = 226 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 126/228 (55%), Gaps = 7/228 (3%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + L + +GY F++ LLE+ALTH S S+ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNLPRLCRTLGYEFSDIRLLEQALTHRSASN---QHNERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F+ F A EG+LS +LV +T + +A+E L ++ + K SI AD V Sbjct: 58 FHQFPKATEGDLSRMRATLVRGDTLAVIAKEFKLGDYLNLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD +E + + +++ R ++DAKT LQE+ PEY+V Sbjct: 118 EAIIGAVYLDADLETCRSLLLGWYETRLADIKPGVGQKDAKTLLQEYLQGMKKPLPEYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 T G HD FTV ++ LA A G+ S+R AEQ+AAA+VL+ Sbjct: 178 TQVEGEAHDQTFTVECRVTDLADAVVGVGSSRRKAEQMAAAQVLELLN 225 >gi|149200057|ref|ZP_01877082.1| ribonuclease III [Lentisphaera araneosa HTCC2155] gi|149136815|gb|EDM25243.1| ribonuclease III [Lentisphaera araneosa HTCC2155] Length = 232 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 5/224 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTL 58 ++ + LE + F +LL +ALTH S S +RLEFLGD ++ L++S Sbjct: 1 MSISFKVLEDNLKCKFNQPTLLREALTHRSYKFESKEPLNDNQRLEFLGDAVIELIVSRY 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF+ + A EG+L+ +LV + A+ + L ++ + K + S +D Sbjct: 61 LFDRYPDAPEGDLTKYRAALVKESALFECAKSIKLGKYLLLGKSELKSQGNERPSNLSDA 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYK 176 E+L+AA+YLD G E A +F ++ + ++ K LQE G P+Y Sbjct: 121 YEALMAAIYLDQGYETAQSFHINILEKLWDEPADLLLVQNPKGTLQELTQKNHGSPPKYI 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 ++GP+HDP + V ++ ++G + +AA++ AA + + Sbjct: 181 TISKTGPEHDPLYKVECILNKELISKGQGKTLKAAQENAARKAI 224 >gi|15605018|ref|NP_219802.1| ribonuclease III [Chlamydia trachomatis D/UW-3/CX] gi|76789019|ref|YP_328105.1| ribonuclease III [Chlamydia trachomatis A/HAR-13] gi|237802720|ref|YP_002887914.1| ribonuclease III [Chlamydia trachomatis B/Jali20/OT] gi|237804642|ref|YP_002888796.1| ribonuclease III [Chlamydia trachomatis B/TZ1A828/OT] gi|255311099|ref|ZP_05353669.1| ribonuclease III [Chlamydia trachomatis 6276] gi|255317400|ref|ZP_05358646.1| ribonuclease III [Chlamydia trachomatis 6276s] gi|7531193|sp|O84299|RNC_CHLTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101618|sp|Q3KM65|RNC_CHLTA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|3328712|gb|AAC67890.1| Ribonuclease III [Chlamydia trachomatis D/UW-3/CX] gi|76167549|gb|AAX50557.1| ribonuclease III [Chlamydia trachomatis A/HAR-13] gi|231272942|emb|CAX09853.1| ribonuclease III [Chlamydia trachomatis B/TZ1A828/OT] gi|231273954|emb|CAX10746.1| ribonuclease III [Chlamydia trachomatis B/Jali20/OT] gi|296435814|gb|ADH17988.1| ribonuclease III [Chlamydia trachomatis G/9768] gi|296436739|gb|ADH18909.1| ribonuclease III [Chlamydia trachomatis G/11222] gi|296437674|gb|ADH19835.1| ribonuclease III [Chlamydia trachomatis G/11074] gi|297140173|gb|ADH96931.1| ribonuclease III [Chlamydia trachomatis G/9301] gi|297748426|gb|ADI50972.1| Ribonuclease III [Chlamydia trachomatis D-EC] gi|297749306|gb|ADI51984.1| Ribonuclease III [Chlamydia trachomatis D-LC] Length = 231 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 65/220 (29%), Positives = 109/220 (49%), Gaps = 3/220 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLF 60 + +E ++ + F++ LL ALTH S + + +E ERLEFLGD +LGL+++ LF Sbjct: 5 VDIQAIESKLNFTFSHPRLLITALTHPSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHLF 64 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + EG LS +LV+AE C + ++L L + + + S A+++E Sbjct: 65 LLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLLE 124 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +++ A+YLDGG+ A + + + K LQ++ V P YK Sbjct: 125 AILGAVYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALPW 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 D P + V V ++G +G SK+ AE++AA + L Sbjct: 185 KSEDGSPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224 >gi|259507587|ref|ZP_05750487.1| ribonuclease III [Corynebacterium efficiens YS-314] gi|90101620|sp|Q8FP16|RNC_COREF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|259164766|gb|EEW49320.1| ribonuclease III [Corynebacterium efficiens YS-314] Length = 247 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 106/225 (47%), Gaps = 4/225 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 A+ ++ L +R+G +R LL ALTH S ++ + ERLEFLGD +LGL ++ L Sbjct: 19 DAVNHADLLERLGVDI-DRDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLAVANRL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S+ E ++S S+VS + +ARE++L FI + SI AD Sbjct: 78 YELYPSSPESDISKMRASIVSRYGLADIAREINLGEFILLGKGELLTEGRSKDSILADTT 137 Query: 120 ESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+L+ A++ G EVA V + + S K + A+ T Sbjct: 138 EALLGAIFRQHGYEVARDVVLTLFHHKINHASAKGIHQDWKTTLQEELAQRKKPMVEYQT 197 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD FT VV + + +G +K+ AEQ AA + + Sbjct: 198 TSVGPDHDLLFTAVVYLGDVEMGRGEGPNKKLAEQEAARQAFLKL 242 >gi|25028532|ref|NP_738586.1| ribonuclease III [Corynebacterium efficiens YS-314] gi|23493817|dbj|BAC18786.1| putative ribonuclease III [Corynebacterium efficiens YS-314] Length = 255 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 106/225 (47%), Gaps = 4/225 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 A+ ++ L +R+G +R LL ALTH S ++ + ERLEFLGD +LGL ++ L Sbjct: 27 DAVNHADLLERLGVDI-DRDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLAVANRL 85 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S+ E ++S S+VS + +ARE++L FI + SI AD Sbjct: 86 YELYPSSPESDISKMRASIVSRYGLADIAREINLGEFILLGKGELLTEGRSKDSILADTT 145 Query: 120 ESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+L+ A++ G EVA V + + S K + A+ T Sbjct: 146 EALLGAIFRQHGYEVARDVVLTLFHHKINHASAKGIHQDWKTTLQEELAQRKKPMVEYQT 205 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD FT VV + + +G +K+ AEQ AA + + Sbjct: 206 TSVGPDHDLLFTAVVYLGDVEMGRGEGPNKKLAEQEAARQAFLKL 250 >gi|256821980|ref|YP_003145943.1| ribonuclease III [Kangiella koreensis DSM 16069] gi|256795519|gb|ACV26175.1| ribonuclease III [Kangiella koreensis DSM 16069] Length = 229 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 121/225 (53%), Gaps = 8/225 (3%) Query: 1 MSALRY--STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 MS + L R+GY F++ SLL+ ALTH S ++ + ERLEFLGD ILG++I+ Sbjct: 1 MSQKKLLIERLCNRLGYQFSDPSLLKLALTHRSGAN---KHNERLEFLGDAILGMVIAEY 57 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF H A EG+L+ SLV +T +++A+E++L + + K SI AD Sbjct: 58 LFTHLKKADEGQLTRLRASLVKGKTLAEIAKEIELGECLYLGEGELKSGGFRRASILADA 117 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYK 176 +E++I A+Y D G EVA T + +++R +D KTELQEW ++ P+Y+ Sbjct: 118 LEAIIGAVYQDSGFEVAKTIILTLYQKRLQNIDLKAVHKDPKTELQEWLQSRKLPLPDYE 177 Query: 177 VTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220 + +G H F V ++ G S+R AEQ AA + L Sbjct: 178 LLKVTGDPHKQTFDVACILAEKKVRTHGSGSSRRNAEQQAAEKAL 222 >gi|15595050|ref|NP_212839.1| ribonuclease III [Borrelia burgdorferi B31] gi|7531188|sp|O51648|RNC_BORBU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|2688625|gb|AAC67040.1| ribonuclease III (rnc) [Borrelia burgdorferi B31] Length = 246 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59 + S + + F+N LL AL HSS S+ + + ERLEFLGD +L L+I+ L Sbjct: 16 KSQLSKFLENLSIDFSNFDLLNTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHL 75 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EGELS + +VS ++ S +ARE++L S+I + + I AD + Sbjct: 76 YKTYPNKSEGELSKARSYIVSEDSLSNIAREINLGSYILLGRGEESNDGRNKKGILADAI 135 Query: 120 ESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + A+YLD G A FV R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 136 EAFVGAIYLDSGFSRATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 195 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V + + + G SK+ AE AA LK Sbjct: 196 DKEIGPDHDKVFCVELYVGENFISNGKGKSKKEAEMRAAEVALKAM 241 >gi|328957311|ref|YP_004374697.1| ribonuclease III [Carnobacterium sp. 17-4] gi|328673635|gb|AEB29681.1| ribonuclease III [Carnobacterium sp. 17-4] Length = 245 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 110/228 (48%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M + L+ + F + S LE+A THSS + ++ ER+EFLGD +L L +S Sbjct: 15 MDDAFLTQLKTKFDLVFHDLSYLEEAFTHSSYVNEHRNLELKDNERIEFLGDAVLELTVS 74 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + + EG+L+ ++V + SQ A+E + FIR+ + ++ Sbjct: 75 RFLYELYPNLPEGKLTRLRATIVCEASLSQFAKEYEFDQFIRLGRGEERMNGRKRPALLC 134 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 D+ ES I ALYLD GI+ +F+D+ + D KT LQE+ K + +Y Sbjct: 135 DLFESFIGALYLDQGIDSVLSFLDQTIFPKIKSGAFSHVMDHKTNLQEFLQQKGEIGIDY 194 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ GP H F V V G QG +K+AAEQVAA L Sbjct: 195 QLVDEIGPAHQKAFVVEVLAEGQVLGQGQGKTKKAAEQVAAENALLAL 242 >gi|89053013|ref|YP_508464.1| ribonuclease III [Jannaschia sp. CCS1] gi|122499604|sp|Q28V23|RNC_JANSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|88862562|gb|ABD53439.1| RNAse III [Jannaschia sp. CCS1] Length = 227 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 91/224 (40%), Positives = 128/224 (57%), Gaps = 1/224 (0%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M R + R+GY F + +LL +ALTHSS+S + +RLEFLGDR+LGL+++ + Sbjct: 1 MKPARELTAFMDRLGYVFEDPALLARALTHSSLSSPTRGDNQRLEFLGDRVLGLVMAEAV 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 AKEG L+ RFN+LV E C+ VAR++DL + +R+ ++ D + Sbjct: 61 LAADTDAKEGTLAPRFNALVRKEACADVARQIDLGAAMRLGKSEMSAGGRRRMALLGDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+YLDGG A V + W +R + RDAKT LQEWA A+ P Y Sbjct: 121 EAVIAAVYLDGGFASARDLVLRLWSERVQSVEEDARDAKTALQEWAQARGMAPPTYTEVA 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RSGPDH P F V V +S A+ +KR AEQ AA ++L + Sbjct: 181 RSGPDHAPVFRVRVTLSSGENAEAQAKAKRQAEQQAAKDLLAQL 224 >gi|148553136|ref|YP_001260718.1| RNAse III [Sphingomonas wittichii RW1] gi|148498326|gb|ABQ66580.1| RNAse III [Sphingomonas wittichii RW1] Length = 234 Score = 138 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M+ + +G+ + +L E+ALTH S YERLEFLGDR+LGL+ L Sbjct: 13 MNDTALRAWIADTLGHEPRDLALFERALTHGSYG---PNHYERLEFLGDRVLGLVAGAWL 69 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F EG+LS R N++VS ETC+ V R + +A+ +++ R D ++ DVV Sbjct: 70 FELFPDEPEGKLSRRLNAIVSRETCADVGRAIGVATHMKLGKQARDDGAVQSDNVLGDVV 129 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+LI ALYL+GG++ A FV + W RA + + K+ LQEWA A P Y + Sbjct: 130 EALIGALYLEGGLDAAQAFVRRAWDDRATGQAQAPKHPKSALQEWAAAHRCKPPVYTMGN 189 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RSGP H PRFTV V I G A A SK+ AE AA +L++ Sbjct: 190 RSGPHHAPRFTVTVAIPGRAEASAEGSSKQEAETAAAKALLEKL 233 >gi|225551799|ref|ZP_03772742.1| ribonuclease III [Borrelia sp. SV1] gi|225371594|gb|EEH01021.1| ribonuclease III [Borrelia sp. SV1] Length = 245 Score = 138 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59 + S + + F+N LL+ AL HSS S+ + + ERLEFLGD +L L+I+ L Sbjct: 15 KAQLSKFLENLSIDFSNFDLLDTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHL 74 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EGELS + +VS ++ S +ARE++L S+I + + I AD + Sbjct: 75 YKTYPNKSEGELSKARSYIVSEDSLSNIAREINLGSYILLGRGEESNDGRNKKGILADAI 134 Query: 120 ESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + A+YLD G A FV R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 135 EAFVGAIYLDSGFLRATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDHD F V + + + G SK+ AE AA LK Sbjct: 195 DKEIGPDHDKVFCVELYVGENFISNGKGKSKKEAEMRAAEVALKAM 240 >gi|301154741|emb|CBW14204.1| RNase III [Haemophilus parainfluenzae T3T1] Length = 227 Score = 138 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 116/231 (50%), Gaps = 11/231 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L LE++IGY F++ L+ ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNHLD--RLERKIGYQFSDLKNLKLALTHRSAS---TQHNERLEFLGDSILNYVIADALY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR +L ++ + S K SI AD VE Sbjct: 56 HQFPRCNEGELSRMRATLVREPTLAIIARNFELGDYMSLGSGELKSGGFRRESILADCVE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD + A V ++K +K G ++DAKT LQE+ K P Y+V Sbjct: 116 AVIGAMALDSSFDKAADIVRSWYKTLLAEIKPGDNQKDAKTRLQEYLQGKHFALPTYEVI 175 Query: 179 FRSGPDHDPRFTVVVEISGL----APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H FTV + + S+R AEQ AA ++LK I Sbjct: 176 KIEGEAHCQTFTVECTVKNVPNIDRTFIAKGSSRRKAEQAAAEQILKTLEI 226 >gi|90961602|ref|YP_535518.1| ribonuclease III [Lactobacillus salivarius UCC118] gi|301299302|ref|ZP_07205588.1| ribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a] gi|122449142|sp|Q1WUA0|RNC_LACS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90820796|gb|ABD99435.1| Ribonuclease III [Lactobacillus salivarius UCC118] gi|300214418|gb|ADJ78834.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus salivarius CECT 5713] gi|300853146|gb|EFK80744.1| ribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a] Length = 232 Score = 138 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 7/222 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLLFNH 62 L++ F + LL+ A TH+S + E YER+EFLGD ++ L +S ++ H Sbjct: 9 LKRDFNITFKDVDLLDAAFTHASYVNETPERKKKLKYYERIEFLGDAVMQLCVSEYIYEH 68 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG++S ++V A++ S+ A E +IR+ K S+ D+ ES Sbjct: 69 YPEMPEGKMSRLRAAMVRADSFSKFAIECHFNEYIRLGKGEEKGNARQRPSLLCDIFESF 128 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 I ALYLD G + F+ K + D KTELQE +Y + Sbjct: 129 IGALYLDQGKDEVVRFISKVIFPKLELGWFDHMMDNKTELQEVLQQNGECKIKYNEVNVT 188 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPD++ +T+ V ++ +G +K+AAEQ+AA + LK+ Sbjct: 189 GPDNERVYTMNVVVNNEVMGEGTGRTKKAAEQMAAYQALKKL 230 >gi|166155383|ref|YP_001653638.1| ribonuclease III [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|238687467|sp|B0BBS8|RNC_CHLTB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|165931371|emb|CAP06943.1| ribonuclease III [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 231 Score = 138 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 66/220 (30%), Positives = 109/220 (49%), Gaps = 3/220 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLF 60 + +E ++ + F++ LL ALTHSS + + +E ERLEFLGD +LGL+++ LF Sbjct: 5 VDIQAIESKLNFTFSHPRLLITALTHSSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHLF 64 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + EG LS +LV+AE C + ++L L + + + S A++ E Sbjct: 65 LLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLFE 124 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +++ A+YLDGG+ A + + + K LQ++ V P YK Sbjct: 125 AILGAVYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALPW 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 D P + V V ++G +G SK+ AE++AA + L Sbjct: 185 KSEDGSPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224 >gi|2500552|sp|Q52698|RNC_RHOCA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|1177610|emb|CAA92647.1| endoribonuclease III [Rhodobacter capsulatus] Length = 228 Score = 138 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 125/224 (55%), Gaps = 1/224 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M A S R+G+ F L +ALTHSS+ + + +RLEFLGDR+LGL ++ L Sbjct: 1 MKVAADLSAFMDRLGHRFTTPEHLVRALTHSSLGSATRPDNQRLEFLGDRVLGLSMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F+ A EG+L+ RFN+LV ETC+ VAR++DL + +++ ++ D + Sbjct: 61 FHADGRASEGQLAPRFNALVRKETCAAVARDIDLGAVLKLGRSEMMSGGRRKDALLGDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+YLD G EVA V + W R RD KT LQEWA A+ P Y+ Sbjct: 121 EAVIAAVYLDAGFEVARALVLRLWAARIQSVDNDARDPKTALQEWAQARGLPPPRYETLG 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 R GPDH P+F + V ++ + SKR AEQ AA +L+R Sbjct: 181 RDGPDHAPQFRIAVVLASGETEEAQAGSKRNAEQAAAKALLERL 224 >gi|323144165|ref|ZP_08078801.1| ribonuclease III [Succinatimonas hippei YIT 12066] gi|322416073|gb|EFY06771.1| ribonuclease III [Succinatimonas hippei YIT 12066] Length = 233 Score = 138 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 87/220 (39%), Positives = 119/220 (54%), Gaps = 8/220 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE IGYAF N SLLE+ALTH S ERLEFLGD ILG++I+ L+ F Sbjct: 10 LHQLEITIGYAFQNLSLLEQALTHRSFG---PVHNERLEFLGDSILGMVIAKKLYAMFPH 66 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ +SLV T +++ARE L + +R+ K + S+ AD VES+IAA Sbjct: 67 NPEGDLTRMRSSLVRETTLAELAREFGLGNCLRLGPGELKTGGARRDSLLADAVESVIAA 126 Query: 126 LYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YLD G E + + + + ++D K+ LQE ++ P+YKV S Sbjct: 127 MYLDSGEEFDTVRQIVLSWFHSRLKTINPKVNQKDPKSSLQELLQSQHKPLPQYKVVNIS 186 Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220 G D+D FTV V + G+ G SKR AEQVAA +L Sbjct: 187 GTDNDQVFTVEVCVEGVSEKFSGKGSSKRRAEQVAAQHLL 226 >gi|218780584|ref|YP_002431902.1| ribonuclease III [Desulfatibacillum alkenivorans AK-01] gi|218761968|gb|ACL04434.1| Ribonuclease III [Desulfatibacillum alkenivorans AK-01] Length = 535 Score = 138 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 111/226 (49%), Gaps = 6/226 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60 LE+ +GY F LL +A+ HSS + + + ERLEFLGD +L L +S +L Sbjct: 305 DLGLLEEALGYNFKTPELLLEAMCHSSYVNEHPDCTWTHNERLEFLGDAVLNLAVSDMLM 364 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + +EG+LS SLV+ +++AR L + + + + SI AD +E Sbjct: 365 SKYSENREGDLSRLRASLVNEGQLAEIARSLGIGQHLLLGKGEARGRGWDKNSILADSLE 424 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 ++ +Y D G A + + +D KT LQE+A +K +TP Y++ Sbjct: 425 AVFGGIYSDSGYADAFKVIKNLIAPLIPEEVAVAAAQDYKTRLQEYAQSKLRITPSYELI 484 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH+ F ++ +QG SK+AAEQ AA EVL G Sbjct: 485 REFGPDHEKTFVAQATVNKEFTSQGKGRSKKAAEQDAAREVLILLG 530 >gi|115525028|ref|YP_781939.1| ribonuclease III [Rhodopseudomonas palustris BisA53] gi|115518975|gb|ABJ06959.1| RNAse III [Rhodopseudomonas palustris BisA53] Length = 268 Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 101/217 (46%), Positives = 133/217 (61%), Gaps = 3/217 (1%) Query: 12 RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 RIG+ F + LL A TH S SHS +SY+R+EFLGD +LGL++S +L+ F A E Sbjct: 49 RIGHDFKDAGLLATAFTHVSALKSSHSRADSYQRMEFLGDHVLGLVVSDMLYRAFPKADE 108 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS R LV ETC+ VA L L I++ + S+ D+ E++I A+YL Sbjct: 109 GELSKRLADLVRKETCADVALALGLLDGIKLGTVGAGAGARLRKSVLGDICEAVIGAVYL 168 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG A FV+ W +R K + RD KT LQEWA K TP Y+ R+GPDHDP+ Sbjct: 169 DGGYPAAAKFVEANWTERMRKPTRSLRDPKTVLQEWAQGKGLPTPAYREVERTGPDHDPK 228 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F V VE+ GL PA+G+ SKRAAE+ AA+ +L REG+ Sbjct: 229 FRVRVELPGLEPAEGIGGSKRAAEKEAASAMLAREGV 265 >gi|114770106|ref|ZP_01447644.1| Ribonuclease III [alpha proteobacterium HTCC2255] gi|114548943|gb|EAU51826.1| Ribonuclease III [alpha proteobacterium HTCC2255] Length = 226 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 91/224 (40%), Positives = 127/224 (56%), Gaps = 1/224 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + + KR+GY F LL +A+THSS+S + + +R EFLGDR+LGL IS L Sbjct: 1 MKPSAELTAFSKRLGYDFQKPELLIQAMTHSSLSSTTRGDNQRFEFLGDRVLGLSISDAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F+ A EG L+ RFN+LV ETC+++A E+ L +++ ++ D + Sbjct: 61 FHKDSDASEGLLAPRFNALVRKETCAEIAIEIKLGEALKMGRSEMLSGGRRKIAVLGDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++I A+YLD G E+A V + W + RD+KT LQEWA AK TP+Y Sbjct: 121 EAVIGAVYLDAGFEIARDMVIRLWSNHIDNAAHDARDSKTILQEWAQAKKLPTPKYIEVD 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RSGPDH P FT+ V I A+ SKRAA Q AAA++L + Sbjct: 181 RSGPDHAPIFTIEVSIETGQSAKAQAQSKRAASQDAAADLLGQL 224 >gi|302335832|ref|YP_003801039.1| RNAse III [Olsenella uli DSM 7084] gi|301319672|gb|ADK68159.1| RNAse III [Olsenella uli DSM 7084] Length = 242 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 111/221 (50%), Gaps = 3/221 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+ +G+ F+++ L+ A+TH S SYERLEFLGD ILG +++T +F F Sbjct: 9 AVEQIVGHHFSDQRLITSAITHPSAVEGKPVSASYERLEFLGDSILGAMVATDMFERFPG 68 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ SLVS +T S+VA L + I R M S +V E+++ A Sbjct: 69 MDEGELTRLKISLVSGKTLSEVAGSLGIGELIVFGESERGTGARGMHSALENVYEAIVGA 128 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LYLD G E FV + + K+ LQE +F PEY++ GP Sbjct: 129 LYLDAGFEATHDFVRRTLSPHMVPELAARPLSPKSRLQEVTQREFRCAPEYRLEGEEGPA 188 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 H P FT VV + G +G SK+ +E AA + L R G+ Sbjct: 189 HSPTFTTVVLVDGRRVGRGSGPSKKESESQAALDALDRLGL 229 >gi|329724352|gb|EGG60864.1| ribonuclease III [Staphylococcus epidermidis VCU144] Length = 249 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 5/225 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 +++ K +G F N L ++A +HSS + + E ERLEFLGD +L L +S LF Sbjct: 16 KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG L+ ++V + A ++ L I + K S+ +D E Sbjct: 76 DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + ALYLD G++ TF +K D KT+ QE+ H++ Y++ Sbjct: 136 AFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIK 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H FT V + A A+G +K+ +EQ AA + K Sbjct: 196 EEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYKLMK 240 >gi|309809559|ref|ZP_07703417.1| ribonuclease III [Lactobacillus iners SPIN 2503V10-D] gi|329921162|ref|ZP_08277684.1| ribonuclease III [Lactobacillus iners SPIN 1401G] gi|308170231|gb|EFO72266.1| ribonuclease III [Lactobacillus iners SPIN 2503V10-D] gi|328934800|gb|EGG31291.1| ribonuclease III [Lactobacillus iners SPIN 1401G] Length = 225 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 108/226 (47%), Gaps = 4/226 (1%) Query: 1 MSALRYS-TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57 M + + L+++ F N LLE+ALTHSS S+ +Q ++YE+LEFLGD +L L IS Sbjct: 1 MVSESFKNELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ HF + EGEL+ +++V E SQ A E + +++ K ++ D Sbjct: 61 YLYRHFPNMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLED 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 V E+ AL+LD G+ F+ + + G Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYK 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 S PRFTV + ++G +QG+ SK+AAEQVAA+ LK Sbjct: 181 VIDSDEA-KPRFTVQLIVAGENISQGIGRSKKAAEQVAASVALKNI 225 >gi|119953483|ref|YP_945692.1| ribonuclease III [Borrelia turicatae 91E135] gi|119862254|gb|AAX18022.1| ribonuclease III [Borrelia turicatae 91E135] Length = 244 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 115/226 (50%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59 + + + F + LL +L+HSS ++ + + + ERLEFLGD +L L+I+ L Sbjct: 14 RKKLNEFLLGLHIDFNDIDLLNMSLSHSSYANEFDQKYANNERLEFLGDSVLNLIITDYL 73 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EGELS + +VS E+ S +AREL+L ++I + + I AD + Sbjct: 74 YRFYPEKSEGELSKARSYIVSEESLSSIARELNLGNYILLGRGEENNDGRNKKGILADAI 133 Query: 120 ESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + ALYLDGG + R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 134 EAFVGALYLDGGFLKTLDFVIELFEVHIRLMFNRGDFKDYKSLLQEYVQKKYKISPTYKL 193 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH+ F V + ++ + G SK+ AE +AA LK Sbjct: 194 AKELGPDHNKVFCVELYVNDKFISNGKGKSKKEAEMIAAEMALKNI 239 >gi|299144133|ref|ZP_07037213.1| ribonuclease III [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518618|gb|EFI42357.1| ribonuclease III [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 233 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 6/229 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 S L + Y F N + ALTHSS + + S ERLEFLGD +L L+I Sbjct: 1 MPKNVSILLSLLEYEFKNDKYINIALTHSSYINEHNLKDTVSNERLEFLGDAVLDLIIGE 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 + + KEG LS + +V+ + ++A + + F+ K+ + S +D Sbjct: 61 YFYYSHKNLKEGSLSKLRSKVVNENSLYKIATNISIGDFMYFGKGEIKNKGNLRESTLSD 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEY 175 +E+LI A+Y+DGG++ + + + R ++ + D KT LQE +Y Sbjct: 121 CLEALIGAIYIDGGLDAVRKVILRLFHDRIMEVENLKSLEDYKTMLQECIQRNKMGNIKY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + GP +D F V I+ + G +K+++EQ+AA L R G Sbjct: 181 VIYDEKGPSNDKVFYSNVLINDIIIGNGYGKTKKSSEQLAAKNALIRIG 229 >gi|126173439|ref|YP_001049588.1| ribonuclease III [Shewanella baltica OS155] gi|160874397|ref|YP_001553713.1| ribonuclease III [Shewanella baltica OS195] gi|217974269|ref|YP_002359020.1| ribonuclease III [Shewanella baltica OS223] gi|304409362|ref|ZP_07390982.1| ribonuclease III [Shewanella baltica OS183] gi|307303720|ref|ZP_07583473.1| ribonuclease III [Shewanella baltica BA175] gi|189043346|sp|A3D1V6|RNC_SHEB5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043348|sp|A9L5N6|RNC_SHEB9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807898|sp|B8EBQ2|RNC_SHEB2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|125996644|gb|ABN60719.1| RNAse III [Shewanella baltica OS155] gi|160859919|gb|ABX48453.1| Ribonuclease III [Shewanella baltica OS195] gi|217499404|gb|ACK47597.1| Ribonuclease III [Shewanella baltica OS223] gi|304351880|gb|EFM16278.1| ribonuclease III [Shewanella baltica OS183] gi|306912618|gb|EFN43041.1| ribonuclease III [Shewanella baltica BA175] gi|315266632|gb|ADT93485.1| ribonuclease III [Shewanella baltica OS678] Length = 226 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + L + + Y F N LL +ALTH S ++ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNLPRLCRTLSYEFKNIELLTQALTHRSAAN---KHNERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV +T + +A+E L ++ + K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVRGDTLTIIAQEFKLGDYLYLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD +EV + K++ +R ++ G ++DAKT LQE P+Y+V Sbjct: 118 EAIIGAVYLDSDLEVCRALLLKWYAERLAEIQPGISQKDAKTLLQEHLQGFKKPLPDYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 G HD FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 178 INIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAAAQVLELLK 225 >gi|259046634|ref|ZP_05737035.1| ribonuclease III [Granulicatella adiacens ATCC 49175] gi|259036799|gb|EEW38054.1| ribonuclease III [Granulicatella adiacens ATCC 49175] Length = 236 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 7/230 (3%) Query: 1 MSALR--YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLL 54 M ++ L+++ +F N +LL +A+THSS ++ ++E ER+EFLGD +L L Sbjct: 1 MKEIKALSKILKEKFDISFNNEALLMEAMTHSSYANEHKEMKGIYNERIEFLGDAVLELT 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 IS LF F +EG+L+ +V ++ S +A+E L ++ + +I Sbjct: 61 ISDWLFRQFPHFQEGQLTKLRAQIVCEDSLSLLAKECSLNEYLLLGKGETLSGGREKPAI 120 Query: 115 QADVVESLIAALYLDGG-IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 DV E+ I ALYLD G EV + + D KTELQE+ V Sbjct: 121 LCDVFEAFIGALYLDKGVNEVQRFLNLVVIPKIKNGRYELITDFKTELQEYLQQNGPVHI 180 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y++ GP HD FTV + + G +K+AAEQ+AA ++ Sbjct: 181 RYELVKEEGPSHDKTFTVQLIVDGKKYKTASGKTKKAAEQMAAKLTMEEL 230 >gi|260425711|ref|ZP_05779691.1| ribonuclease III [Citreicella sp. SE45] gi|260423651|gb|EEX16901.1| ribonuclease III [Citreicella sp. SE45] Length = 227 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 91/223 (40%), Positives = 132/223 (59%), Gaps = 1/223 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + + LE+R+G+ FA+ L +ALTHSS+S +E +RLEFLGDR+LGL+++ L Sbjct: 1 MKRSAEIAALEQRLGHRFADPERLRRALTHSSMSAPGREDNQRLEFLGDRVLGLVMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + A EG+L+ RFN+LV E C++VARE+DL + +++ ++ D + Sbjct: 61 LSEDRGASEGQLAPRFNALVRKEACAEVAREIDLGAALKLGRSEMMSGGRRKMALLGDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+YLD G A V + W R + + RDAKT LQEWA A+ V P Y Sbjct: 121 EAVIAAVYLDAGFGTAKALVLRLWGDRIARVEEDARDAKTSLQEWAQARGMVPPSYTEVA 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 R GPDH P FT+ + A A+ SKR AEQ AA+ +L + Sbjct: 181 REGPDHAPVFTIEARLENGAAARATAGSKRKAEQQAASGLLDK 223 >gi|259501533|ref|ZP_05744435.1| ribonuclease III [Lactobacillus iners DSM 13335] gi|302191494|ref|ZP_07267748.1| ribonuclease III [Lactobacillus iners AB-1] gi|309804216|ref|ZP_07698293.1| ribonuclease III [Lactobacillus iners LactinV 11V1-d] gi|309806878|ref|ZP_07700865.1| ribonuclease III [Lactobacillus iners LactinV 03V1-b] gi|309808658|ref|ZP_07702550.1| ribonuclease III [Lactobacillus iners LactinV 01V1-a] gi|325913482|ref|ZP_08175848.1| ribonuclease III [Lactobacillus iners UPII 60-B] gi|259167051|gb|EEW51546.1| ribonuclease III [Lactobacillus iners DSM 13335] gi|308163619|gb|EFO65889.1| ribonuclease III [Lactobacillus iners LactinV 11V1-d] gi|308166744|gb|EFO68936.1| ribonuclease III [Lactobacillus iners LactinV 03V1-b] gi|308168132|gb|EFO70258.1| ribonuclease III [Lactobacillus iners LactinV 01V1-a] gi|325477251|gb|EGC80397.1| ribonuclease III [Lactobacillus iners UPII 60-B] Length = 225 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 108/226 (47%), Gaps = 4/226 (1%) Query: 1 MSALRYS-TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57 M + + L+++ F N LLE+ALTHSS S+ +Q ++YE+LEFLGD +L L IS Sbjct: 1 MVSESFKNELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ HF + EGEL+ +++V E SQ A E + +++ K ++ D Sbjct: 61 YLYRHFPNMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLED 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 V E+ AL+LD G+ F+ + + G Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYK 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 S PRFTV + ++G +QG+ SK+AAEQVAA+ LK Sbjct: 181 VIDSDEA-QPRFTVQLIVAGENISQGIGRSKKAAEQVAASVALKNI 225 >gi|322379758|ref|ZP_08054068.1| ribonuclease III [Helicobacter suis HS5] gi|321147829|gb|EFX42419.1| ribonuclease III [Helicobacter suis HS5] Length = 224 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 111/220 (50%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + TL+KR+GY F + LL++ALTH S ++ ERLEFLGD +L L+++ +LF F Sbjct: 2 FETLQKRLGYVFKDPLLLQQALTHRS--TKAHKNNERLEFLGDAVLDLVVAEILFTRFTD 59 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG+LS SLV+ + ++A L+L I +S + SI + E+L+ A Sbjct: 60 LQEGDLSKMRASLVNEKAFFKLALSLNLQDHILISQAEANNNGHTKPSILSSAFEALMGA 119 Query: 126 LYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+E+ + L D K+ LQE A+F P Y + SGP Sbjct: 120 IYLESGLEIIKNLIQDLLDMAYPNLSPKTLFMDYKSALQELTQARFKAIPIYALKSESGP 179 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH +F + + I SK+ AEQ+ A K+ Sbjct: 180 DHAKQFEMQIFILNKLYGTCKAGSKKQAEQLCAQVAYKQL 219 >gi|158423628|ref|YP_001524920.1| ribonuclease III [Azorhizobium caulinodans ORS 571] gi|226735365|sp|A8I3B5|RNC_AZOC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|158330517|dbj|BAF88002.1| ribonuclease III [Azorhizobium caulinodans ORS 571] Length = 235 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 96/226 (42%), Positives = 138/226 (61%), Gaps = 3/226 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61 ++ LE R+G++FA+RS L ALTH S SY+RLEFLGD +LG ++S +L+ Sbjct: 6 DFAALEARLGHSFADRSHLVLALTHISSVKGQAVRVRSYQRLEFLGDHVLGSVVSHMLYA 65 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EGELS R LV E C++VA+++ L ++R+ + +I ADV E+ Sbjct: 66 AFPKAEEGELSRRLAELVREEACAEVAQDMGLGPYLRLGPGEAQSGARQRRAILADVAEA 125 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 ++AA+YLDGG E A V+++W+ R + RD KT LQEWA A+ P Y+ RS Sbjct: 126 VVAAVYLDGGYEAASALVERFWRGRLEAPRRPLRDPKTVLQEWAQARGLPPPVYRDVERS 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 GPDH PRF V V++ GL A+ SK+ A++ AA+ L REG+ T Sbjct: 186 GPDHAPRFRVAVDLPGLECAEAEGGSKQTAQKAAASAFLAREGVVT 231 >gi|227890689|ref|ZP_04008494.1| ribonuclease III [Lactobacillus salivarius ATCC 11741] gi|227867627|gb|EEJ75048.1| ribonuclease III [Lactobacillus salivarius ATCC 11741] Length = 232 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 109/229 (47%), Gaps = 11/229 (4%) Query: 6 YSTLEKRIG----YAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLI 55 L++ + F + LL+ A TH+S + E YER+EFLGD ++ L + Sbjct: 2 IEGLQEMLKRDFDITFKDVDLLDAAFTHASYVNETPERKKKLKYYERIEFLGDAVMQLCV 61 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S ++ H+ EG++S ++V A++ S+ A E +IR+ K S+ Sbjct: 62 SEYIYEHYPEMPEGKMSRLRAAMVRADSFSKFAIECHFNEYIRLGKGEEKGNARQRPSLL 121 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPE 174 D+ ES I ALYLD G + F+ K + D KTELQE + Sbjct: 122 CDIFESFIGALYLDQGKDEVVRFISKVIFPKLELGWFDHMMDNKTELQEVLQQNGECKIK 181 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y +GPD++ +T+ V ++ +G +K+AAEQ+AA + LK+ Sbjct: 182 YNEVNVTGPDNERVYTMNVVVNNEVMGEGTGRTKKAAEQMAAYQALKKL 230 >gi|70726682|ref|YP_253596.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435] gi|90101647|sp|Q4L5T5|RNC_STAHJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|68447406|dbj|BAE04990.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435] Length = 245 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 5/225 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 +++ +G+ ++N L ++A +HSS + + ERLEFLGD +L L +S LF Sbjct: 16 QFAKKMNELGFTYSNIDLYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG L+ ++V + A +++L I + K S+ +D E Sbjct: 76 DKHPDLPEGNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKTGGRTRPSLVSDAFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + ALYLD G++V F +K D KT+ QE+ H++ Y++ Sbjct: 136 AFVGALYLDQGLDVVWQFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNRGDVTYRLIK 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H FT V + A A G +K+ +EQ AA + Sbjct: 196 EEGPAHHRLFTSEVILENEAVATGQGKTKKESEQKAAESAYSKLK 240 >gi|313683639|ref|YP_004061377.1| RNAase iii [Sulfuricurvum kujiense DSM 16994] gi|313156499|gb|ADR35177.1| RNAse III [Sulfuricurvum kujiense DSM 16994] Length = 226 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 70/212 (33%), Positives = 103/212 (48%), Gaps = 6/212 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L++R+GY F N+ LL +ALTH S Y + ERLEFLGD +L L++ L+ Sbjct: 1 MD--NLQALQERLGYTFQNKELLIEALTHKSYKQPY--NNERLEFLGDAVLDLIVGEYLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+LS SLV+ + +A L+L I +S+ + +S+ ++ E Sbjct: 57 KKFRGYDEGKLSKMRASLVNEGGFTSLANHLNLGEHIFLSNAEENNSGRTKSSLLSNAFE 116 Query: 121 SLIAALYLDGG--IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+YL+ G T + +D KT LQE A +G TPEY++ Sbjct: 117 AVMGAMYLETGLGKVQEITVSLLEHVHPDISLDSLFKDYKTSLQELTQAHYGTTPEYQLI 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 GPDH F V V I G A SK+ Sbjct: 177 AAHGPDHKKEFEVAVIIDGKRYASAQGKSKKQ 208 >gi|325577735|ref|ZP_08148010.1| ribonuclease III [Haemophilus parainfluenzae ATCC 33392] gi|325160480|gb|EGC72606.1| ribonuclease III [Haemophilus parainfluenzae ATCC 33392] Length = 227 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 116/231 (50%), Gaps = 11/231 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L LE++IGY F++ L+ ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNHLD--RLERKIGYQFSDLKNLKLALTHRSAS---TQHNERLEFLGDSILNYVIADALY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGELS +LV T + +AR +L ++ + S K SI AD VE Sbjct: 56 HQFPRCNEGELSRMRATLVREPTLAMLARNFELGDYMSLGSGELKSGGFRRESILADCVE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+ LD + A V ++K +K G ++DAKT LQE+ K P Y+V Sbjct: 116 AVIGAMALDSSFDKAADIVRSWYKTLLAEIKPGDNQKDAKTRLQEYLQGKHFALPTYEVI 175 Query: 179 FRSGPDHDPRFTVVVEISGL----APAQGMDCSKRAAEQVAAAEVLKREGI 225 G H FTV + + S+R AEQ AA ++LK I Sbjct: 176 KIEGEAHCQTFTVECTVKNVPNIDRTFIAKGSSRRKAEQAAAEQILKILEI 226 >gi|78223520|ref|YP_385267.1| ribonuclease III:double-stranded RNA binding [Geobacter metallireducens GS-15] gi|90101627|sp|Q39T82|RNC_GEOMG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|78194775|gb|ABB32542.1| RNAse III [Geobacter metallireducens GS-15] Length = 246 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 118/223 (52%), Gaps = 7/223 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFN 61 + LE IGY F NR L +ALTH S + + ERLEFLGD +LGLL+ +LF Sbjct: 17 TELEAGIGYRFVNRQFLAEALTHRSWVNERRGEEGIRDNERLEFLGDAVLGLLVGKMLFA 76 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F ++EG L+ SLV ET + +A L + + + S+ A+ E+ Sbjct: 77 RFPQSREGVLARMKASLVGEETLAALASARGLGRHLLLGRGEERSGGRERRSLLANTYEA 136 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+AA+YLDGG+ V++ + + SG RD KTE QE +FG P Y++ Sbjct: 137 LLAAVYLDGGLGPVERIVEQDFSPLLAGIASGATGRDFKTEFQEMVQTRFGTAPTYELIA 196 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP HD RFTV+ ++G +G SK+ AEQ AA +VL R Sbjct: 197 TDGPPHDRRFTVIAMVAGKRMGEGAGRSKKEAEQAAARQVLAR 239 >gi|329942692|ref|ZP_08291471.1| ribonuclease III [Chlamydophila psittaci Cal10] gi|332287287|ref|YP_004422188.1| ribonuclease III [Chlamydophila psittaci 6BC] gi|313847871|emb|CBY16866.1| ribonuclease III [Chlamydophila psittaci RD1] gi|325506653|gb|ADZ18291.1| ribonuclease III [Chlamydophila psittaci 6BC] gi|328814952|gb|EGF84941.1| ribonuclease III [Chlamydophila psittaci Cal10] gi|328914533|gb|AEB55366.1| ribonuclease III [Chlamydophila psittaci 6BC] Length = 237 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 4/224 (1%) Query: 1 MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLIS 56 M+ + +E ++ + F LL ALTH S + E ERLEFLGD +L L+++ Sbjct: 1 MNNLINIKEVEAKLNFTFTQPKLLVTALTHPSYRNETATITEDSERLEFLGDAVLCLIVT 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F S EG LS +L++A +C Q L L ++ + R TS A Sbjct: 61 EHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLIGKGERIQNERGRTSAYA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 ++ E+++ A+YLDGG+ A + + K LQ+ P Y+ Sbjct: 121 NLFEAILGAVYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKHLRTLPVYQ 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P + + V ++ +G SK+ AE++AA + L Sbjct: 181 CESWTSPQGASGYHIRVIVNNEVWGEGFALSKKEAEKLAAQQAL 224 >gi|240146505|ref|ZP_04745106.1| ribonuclease III [Roseburia intestinalis L1-82] gi|257201361|gb|EEU99645.1| ribonuclease III [Roseburia intestinalis L1-82] gi|291535139|emb|CBL08251.1| RNAse III [Roseburia intestinalis M50/1] Length = 228 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 69/209 (33%), Positives = 106/209 (50%), Gaps = 5/209 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + L+ RIGY F LL +ALTHSS ++ ERLEFLGD +L ++ S L+ Sbjct: 3 KLQELQNRIGYTFEKEGLLRQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSDFLY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ EG+L+ S+V T + RE+DL ++ + + SI +D +E Sbjct: 63 RNYPDLPEGDLTKLRASIVCEPTLALCTREMDLGDYLLLGKGENQTGGRKRKSILSDALE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 S+I A+YLDGG E A F+ K+ ++ K D+KT LQE + + Y++ Sbjct: 123 SVIGAIYLDGGFEPAKKFIHKFIL-TDIEHKKLFYDSKTILQEVVQGNYKESLHYELISE 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDHD +F+V I G +K+ Sbjct: 182 EGPDHDKQFSVEARIGDKVIGAGTGHTKK 210 >gi|169795096|ref|YP_001712889.1| ribonuclease III [Acinetobacter baumannii AYE] gi|239501066|ref|ZP_04660376.1| ribonuclease III [Acinetobacter baumannii AB900] gi|260556582|ref|ZP_05828800.1| ribonuclease III [Acinetobacter baumannii ATCC 19606] gi|301345824|ref|ZP_07226565.1| ribonuclease III [Acinetobacter baumannii AB056] gi|301512403|ref|ZP_07237640.1| ribonuclease III [Acinetobacter baumannii AB058] gi|301594764|ref|ZP_07239772.1| ribonuclease III [Acinetobacter baumannii AB059] gi|332851055|ref|ZP_08433164.1| ribonuclease III [Acinetobacter baumannii 6013150] gi|332869696|ref|ZP_08438884.1| ribonuclease III [Acinetobacter baumannii 6013113] gi|332875945|ref|ZP_08443731.1| ribonuclease III [Acinetobacter baumannii 6014059] gi|238685526|sp|A3M7P2|RNC_ACIBT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238688097|sp|B0VCU0|RNC_ACIBY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|169148023|emb|CAM85886.1| ribonuclease III, ds RNA [Acinetobacter baumannii AYE] gi|193078016|gb|ABO12936.2| ribonuclease III [Acinetobacter baumannii ATCC 17978] gi|260409841|gb|EEX03141.1| ribonuclease III [Acinetobacter baumannii ATCC 19606] gi|332730219|gb|EGJ61544.1| ribonuclease III [Acinetobacter baumannii 6013150] gi|332732598|gb|EGJ63831.1| ribonuclease III [Acinetobacter baumannii 6013113] gi|332735811|gb|EGJ66852.1| ribonuclease III [Acinetobacter baumannii 6014059] Length = 230 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 114/230 (49%), Gaps = 9/230 (3%) Query: 1 MSALRYS----TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56 M+ ++ L RIGY F LL+ ALTH S+S ++ +YERLEFLGD +LG++I+ Sbjct: 1 MTKHQFKLSDPRLLSRIGYQFKQPELLQLALTHRSVS--HKYNYERLEFLGDSLLGMIIA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L++ + EG L+ +LV E ++A +L L+ + +S+ K SI A Sbjct: 59 NYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILA 118 Query: 117 DVVESLIAALYLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 D VE++I A+YLD ++ +D K+ LQE+ A+ P Sbjct: 119 DTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLP 178 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V G F V + GL+ G S+R AEQ AAAE+LK Sbjct: 179 VYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILKLL 228 >gi|332298046|ref|YP_004439968.1| Ribonuclease 3 [Treponema brennaborense DSM 12168] gi|332181149|gb|AEE16837.1| Ribonuclease 3 [Treponema brennaborense DSM 12168] Length = 256 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 104/222 (46%), Gaps = 5/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 + E+ I F + LL+ A H S S+ + ERLEFLGD +LG+ +T L+ Sbjct: 28 QLLDFERAISVHFNDLQLLDLAFHHRSYSNEGANTRYNNERLEFLGDAVLGMATATYLYE 87 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG+L+ + +VS T + +A E+ + S + + +I AD VE+ Sbjct: 88 SMLERPEGDLARIKSVVVSEMTLAPIALEIGVDSCLVLGKGEELSGGRTKKAILADAVEA 147 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A YLD G A V + K K RD KT LQE+ K+ P Y++ Sbjct: 148 VIGAYYLDSGYSAAEKLVLELIVPEIQKVLQNKHHRDYKTLLQEFYQKKYKECPVYELVK 207 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 R+GPDHD F V V + + +K+ AEQ AA + Sbjct: 208 RTGPDHDRTFWVSVHLHSVTYGPASGKNKKEAEQSAARLAWE 249 >gi|225850066|ref|YP_002730300.1| ribonuclease III [Persephonella marina EX-H1] gi|225645108|gb|ACO03294.1| ribonuclease III [Persephonella marina EX-H1] Length = 249 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 8/223 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 R LE+++GY F +++L ALTHSS + Y + YE LEFLGD +L L++S +L Sbjct: 12 RIKKLEQKLGYVFKDKNLPLTALTHSSFAAEYHKEIKDYEVLEFLGDAVLSLIVSEILIK 71 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A EGELS ++++S S++AR L L + +S S+ DV ES Sbjct: 72 TFPEASEGELSQTRSAVISEAYLSRLARILGLNELVLLSRGEIAQKGMERESLLCDVFES 131 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL-----KSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + A+Y+D ++ + K G RD K+ LQ FGV P+Y Sbjct: 132 VFGAVYVDCDYDIKIPREIFNRFFKDYLIESIKKGNIPRDYKSILQIMTQRLFGVVPKYS 191 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + GP+H+ FT+ + + G SK+ AE AA + Sbjct: 192 MVSAEGPEHEKIFTMECSVDNVVRTFGTGKSKKEAETEAAKKA 234 >gi|227513461|ref|ZP_03943510.1| ribonuclease III [Lactobacillus buchneri ATCC 11577] gi|227524604|ref|ZP_03954653.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290] gi|227083334|gb|EEI18646.1| ribonuclease III [Lactobacillus buchneri ATCC 11577] gi|227088279|gb|EEI23591.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290] Length = 236 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 72/218 (33%), Positives = 109/218 (50%), Gaps = 5/218 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64 L++ ++ LL++A T +S + +++ YERLEFLGD +L L++S +F + Sbjct: 9 LKQDFNIHIDDQDLLDEAFTQASYVNEHRDQHLKFYERLEFLGDAVLQLIVSEYIFKRYP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G L+ ++V+ ++ S ARE +IR+ K S+ D+ ES + Sbjct: 69 KLPQGRLTRLRAAMVNEQSFSTFARECHFNKYIRLGKGEEKAGARDRDSLLCDIFESFVG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ALYLD G +V FV + + D KTELQE A A V +Y++ GP Sbjct: 129 ALYLDQGKKVVEGFVQQVIFPKLDEGMFAKFFDHKTELQELAQADGPVDIDYELVDEYGP 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 D+D F V V I G+ SK+ AEQ AA E LK Sbjct: 189 DNDRLFKVNVAIDDKLLGVGIGHSKKDAEQRAAQEALK 226 >gi|288575033|ref|ZP_06393390.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570774|gb|EFC92331.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002] Length = 244 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 114/224 (50%), Gaps = 8/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 S ++ R+GY+F + LL +ALTHSS +H + ERLEFLGD +L L ST LF Sbjct: 9 NLSLIQDRLGYSFTDIELLREALTHSSYAHESGLRSWNERLEFLGDAVLELATSTRLFRA 68 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV-CSFMTSIQADVVES 121 EG L+ LV E A L L+ +RV+ LRK ++S+ AD +E+ Sbjct: 69 MKDMDEGGLTRLRARLVRKEALLTWAEALGLSGILRVNRGLRKKGEGCDLSSMHADAIEA 128 Query: 122 LIAALYLDGGIEV-----AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + A+Y+DGG ++ + K ++ G D K+ELQ+ K PEY+ Sbjct: 129 IFGAVYMDGGYDMAESVVNRYLDFLFEKGDYIQDGNSSIDPKSELQQILQIKGEPLPEYR 188 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + R GP H P F V + +SG+ + G S + AE AA + L Sbjct: 189 IMSREGPPHSPSFEVELYVSGVLLSSGRGRSIKEAEVQAALDGL 232 >gi|116331646|ref|YP_801364.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280610|sp|Q04R64|RNC_LEPBJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116125335|gb|ABJ76606.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 247 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 112/223 (50%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62 + L K+IG F+ A HSS + E ERLEFLGD +LGL+ + LF Sbjct: 21 FKKLSKKIGIKFSKIEYYNTAFIHSSYKNENPEILEDNERLEFLGDSVLGLVAARSLFQK 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A EGELS + +VS + +A +L+L ++ + + I A++ ESL Sbjct: 81 YPKASEGELSRIKSKIVSTPILNSIAEKLNLGEYLLLGKGEKNSQGKGRRKIAANLFESL 140 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YLD G EVA F+ ++ + + RD KT+LQE++ F P Y++ Sbjct: 141 VGAIYLDRGFEVAEKFIVQHLLEFAENPDMEESVRDYKTQLQEYSQKHFKTLPVYRMKGE 200 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH F V V I A G SK+ AEQ AA E+ R Sbjct: 201 SGPDHSKTFQVSVRIRDQWEASGYGASKKIAEQNAAKELYIRI 243 >gi|257093153|ref|YP_003166794.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045677|gb|ACV34865.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 223 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 83/221 (37%), Positives = 115/221 (52%), Gaps = 6/221 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+ +GY F +R+LL+ ALTH S S ERLEFLGD IL +I+ LF F + Sbjct: 4 SRLERGLGYTFRDRALLQTALTHRSYS---SPHNERLEFLGDAILNAVIARSLFERFPTL 60 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS LV + Q A L L F+R+ +K SI AD +E+L AL Sbjct: 61 PEGDLSRLRAQLVRQDGLHQQALALSLGDFLRLGEGEQKSGGQQRPSILADGLEALFGAL 120 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LD G E AG +++ ++ + + +DAKT LQE+ + P+Y +T G Sbjct: 121 WLDAGFEAAGEVINRLYESMLKQLIPGQGTKDAKTRLQEYLQGRRLALPQYALTGAEGEA 180 Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224 H FTV I L +G ++RAAEQ+AA L G Sbjct: 181 HAQHFTVTCVIDALRIRTEGSGSNRRAAEQIAAERALDTLG 221 >gi|225374436|ref|ZP_03751657.1| hypothetical protein ROSEINA2194_00051 [Roseburia inulinivorans DSM 16841] gi|225213674|gb|EEG96028.1| hypothetical protein ROSEINA2194_00051 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 69/209 (33%), Positives = 104/209 (49%), Gaps = 5/209 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + L+ +IGY F LL +ALTHSS ++ ERLEFLGD +L ++ S L+ Sbjct: 3 NFLELQDKIGYEFKQEKLLRQALTHSSFANEKHLRKHSDNERLEFLGDAVLEIVSSDFLY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG+L+ SLV T + RE++L ++ + SI +D +E Sbjct: 63 KAYPDKSEGDLTKLRASLVCEPTLAICTREMELGKYLFLGKGENLTGGRNRNSILSDALE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++I A+YLDGG E A TF+ K+ ++ K D KT LQE + Y++ Sbjct: 123 AVIGAIYLDGGFEHAKTFIHKFIL-TDIEHKKLFYDCKTSLQEVVQGHYEEELNYRLISE 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDHD RF+V I G+ +K+ Sbjct: 182 EGPDHDKRFSVEARIGERVIGTGIGHTKK 210 >gi|329850746|ref|ZP_08265591.1| ribonuclease III [Asticcacaulis biprosthecum C19] gi|328841061|gb|EGF90632.1| ribonuclease III [Asticcacaulis biprosthecum C19] Length = 236 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 88/222 (39%), Positives = 130/222 (58%), Gaps = 3/222 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFN 61 + T++ R+GY F ++ LLE ALTH+S++ + ERLEFLGDR+LGL+I+ L + Sbjct: 11 IAIETVQDRLGYRFRDKQLLEVALTHASVAEGARRIADNERLEFLGDRVLGLMIAEALMD 70 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +F A+EGELS RF++LVS E C+ +AR+L L +R+++ K +I D E+ Sbjct: 71 NFPEAEEGELSRRFHALVSREACADIARQLSLGEAVRLAAGETKSGGRSNPTILGDACEA 130 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 L+AA+Y+DGG + W+Q R + K+ LQEWA A P Y + R Sbjct: 131 LMAAVYVDGGYDAVVKSFAPLWQQLLLDSGNASRSNPKSFLQEWAVANAKRPPAYNLIER 190 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH P FT+ V I GL P S++ AE+ AA +++R Sbjct: 191 RGPDHAPVFTMEVVIDGLQPQSATGKSRQEAEKTAALALIER 232 >gi|323340721|ref|ZP_08080973.1| ribonuclease III [Lactobacillus ruminis ATCC 25644] gi|323091844|gb|EFZ34464.1| ribonuclease III [Lactobacillus ruminis ATCC 25644] Length = 230 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 108/220 (49%), Gaps = 5/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 L+ G N L ++A TH+S + + + YER+EFLGD ++ L +S LF Sbjct: 7 KKLKDDYGINVKNTDLFDEAFTHASYVNEHPKEHLKYYERIEFLGDAVMQLCVSEYLFKR 66 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + S EG+LS ++V ++ S+ A+E +IR+ K +S+ D+ ES Sbjct: 67 YPSLPEGKLSRLRAAMVCEDSFSKFAKECHFDEYIRLGKGEEKADARNRSSLLCDIFESF 126 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 I ALYLD G + F+ + + D KTELQE+ EYK+ Sbjct: 127 IGALYLDQGKDKVVEFISAVVFPKLDMGWFDHLLDHKTELQEYLQQNGDCKIEYKMLDEK 186 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPD+D +T+ V G +G+ SK+ AEQ AA + LK Sbjct: 187 GPDNDKTYTMAVYADGKKIGEGVGSSKKNAEQAAAYQALK 226 >gi|195952887|ref|YP_002121177.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1] gi|226741373|sp|B4U7T8|RNC_HYDS0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|195932499|gb|ACG57199.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1] Length = 232 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 113/226 (50%), Gaps = 9/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + + LE++IGY F +++L++KA TH S S E+YE LEFLGD ++ + +L Sbjct: 1 MDS--FELLEEKIGYRFKDKNLVKKAFTHISFSK-SSENYEVLEFLGDALVNFMTVNILV 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + KEGELS + L+S E + +A+ L+ +I +S + SI DV E Sbjct: 58 EAFPNKKEGELSQLKSFLISEEFLASLAKSLNFEKYILISKGEELKGSNKNPSILCDVFE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR-----ALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 + AA+Y+D G + T + + S ++D KT LQE K+ P Y Sbjct: 118 AFWAAIYIDSGYDCKLTKSLFEHHFKSQILEMVNSNSLKQDYKTALQEITQKKWKERPIY 177 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V GP+H FTV L G SK+ AEQ AA +L+ Sbjct: 178 NVISVEGPEHRKTFTVECLFKDLR-TTGKGNSKKYAEQEAAKNMLQ 222 >gi|304436759|ref|ZP_07396727.1| ribonuclease III [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370239|gb|EFM23896.1| ribonuclease III [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 238 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 115/223 (51%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNH 62 L +G FA+ S L++ALTH S ++ + ERLEFLGD +L L IST L++ Sbjct: 13 LVRLSASLGVDFADLSTLDEALTHPSYANEARGHAAHNERLEFLGDAVLELAISTYLYDA 72 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EGEL+ SLV +ET +++AR L L + +R+ + + +V E++ Sbjct: 73 YPHCAEGELTKMRASLVQSETLARLARRLHLGAHLRMGRGEMLGGGAERQNNLENVFEAV 132 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLD G + A +V + + + +D KT LQE+ Y+ Sbjct: 133 IGAVYLDRGWDAARAYVQRQFADELPHLRQEHVAQDYKTMLQEYVQGHDHEPIAYEQVAE 192 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDHD RFT+ V I +G SK+ AEQ AAA L+R Sbjct: 193 SGPDHDKRFTMRVRIGTAPLGEGTGRSKKEAEQHAAAAALERL 235 >gi|302383079|ref|YP_003818902.1| ribonuclease III [Brevundimonas subvibrioides ATCC 15264] gi|302193707|gb|ADL01279.1| ribonuclease III [Brevundimonas subvibrioides ATCC 15264] Length = 237 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 90/237 (37%), Positives = 134/237 (56%), Gaps = 11/237 (4%) Query: 1 MSALR---YSTLEKRIGYAFANRSLLEKALTHSS-------ISHSYQESYERLEFLGDRI 50 M+ +R + L +R+G+ F + +LLE+ALTHSS + ERLEFLGDR+ Sbjct: 1 MANIRAEAVTALVQRLGHDFRDPALLERALTHSSVGEGADKAAGKPARHNERLEFLGDRV 60 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 LGLL++ L + F +A EGELS R ++LV C +V L + +R+S K Sbjct: 61 LGLLVAQRLHHDFPAADEGELSSRLHALVDKHACGRVGEALKIGDALRLSPGETKTGGRR 120 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKF 169 + AD VE+L+AA++LDGG+E A D+ W + A + + + K+ LQEWA Sbjct: 121 KEGVVADAVEALLAAVFLDGGLEAARAVFDRAWAHELASPAPRALNNPKSALQEWAQGHG 180 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P Y+V ++G DH P FTV V I G+ P + S++ AE+ AA +L+REG+ Sbjct: 181 RPLPSYRVASQTGSDHAPTFTVEVSIEGVEPLTAVGRSRQDAEKAAATALLQREGVI 237 >gi|189485602|ref|YP_001956543.1| ribonuclease III [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287561|dbj|BAG14082.1| ribonuclease III [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 243 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 109/225 (48%), Gaps = 5/225 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTL 58 M + +K I Y F + +L ALTH S + + R+EFLGD IL +++ Sbjct: 1 MLNKNWEKFQKIIEYKFGDPKILATALTHKSYAAETVGENYNRRMEFLGDSILSAIVAET 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + EG+LS ++SA S ARE+DL I + S+ DV Sbjct: 61 LYLRYPRESEGKLSQFKAQIISAHNLSSWAREMDLGGCIYLGKSEDTKEARQRESLLCDV 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLDGG E A FV ++ + D K+ LQE + + PEYKV Sbjct: 121 FEAVIGAIYLDGGFENAKKFVLRFLNDQKEIEIT---DYKSRLQEILQSIYKELPEYKVI 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH+ +F V V I +G SK+ A+Q AA + +K Sbjct: 178 KESGPDHNKKFEVAVYIKSELLGKGAGNSKKEAQQFAAKQAMKNI 222 >gi|257460238|ref|ZP_05625341.1| ribonuclease III [Campylobacter gracilis RM3268] gi|257442303|gb|EEV17443.1| ribonuclease III [Campylobacter gracilis RM3268] Length = 303 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 5/221 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L++++GY F N++ L+ ALTH S + + + ERLEFLGD ++ L++ LF F Sbjct: 3 NLEKLQEKLGYKFKNQTHLKIALTHKSAKNGH--NNERLEFLGDAVMDLIVGEYLFKKFS 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S EG+LS +LV+ + S+ A+ L + + +S ++ S+ +D E+++ Sbjct: 61 S-DEGDLSKLRAALVNESSFSKFAKFLGIGENLNMSLSEERNGGREKPSLLSDAFEAIMG 119 Query: 125 ALYLDGGIEVAGTFVDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL+ G++ + + RD KT LQE AKFGVTPEY + SG Sbjct: 120 AVYLESGLQNTARIAIAILEILYPRISFNELVRDYKTALQELTQAKFGVTPEYILLGSSG 179 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH F + + G + + SK+ AEQ A + Sbjct: 180 PDHKKSFEMAALVGGKWLSSAVGASKKEAEQKCAQIAIDLL 220 >gi|268608881|ref|ZP_06142608.1| ribonuclease III [Ruminococcus flavefaciens FD-1] Length = 229 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 + E IGY F N+ L+E+AL+HSS ++ + S ERLEFLGD +L +++S L+ Sbjct: 3 KTEEFENIIGYTFKNKELIEQALSHSSYANEKKRAGGSNERLEFLGDSVLSIVVSDYLYK 62 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ SLV ++ A++++L F+ + SI AD E+ Sbjct: 63 NINV-PEGELTKMRASLVCEKSLFVFAQQIELGEFLHLGKGEENTGGRERPSILADAFEA 121 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV-TFR 180 +IAA+YLDGG+E A + ++ + ++ K L + K V Sbjct: 122 VIAAIYLDGGMEAAAKHILRFMPEDIKRTKKPVLSDFKTLLQEVVQKNPEEKVEYVLIGE 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDH+ RF V V ++ +G SK+ AEQ+AA E L+ G Sbjct: 182 EGPDHNKRFVVEVCLNSQVIGKGKGKSKKEAEQLAAKEALELMG 225 >gi|187918561|ref|YP_001884124.1| ribonuclease III [Borrelia hermsii DAH] gi|119861409|gb|AAX17204.1| ribonuclease III [Borrelia hermsii DAH] Length = 243 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 114/224 (50%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 + + F + LL +L+HSS ++ + + + ERLEFLGD +L L+I+ L+ Sbjct: 15 KLDEFLMGLHIDFNDIDLLNMSLSHSSYANEFDQKYANNERLEFLGDSVLNLIITDYLYK 74 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGELS + +VS E+ S +AREL+L ++I + + I AD +E+ Sbjct: 75 FYPEKSEGELSKARSYIVSEESLSSIARELNLGNYILLGRGEENNDGRNKKGIIADAIEA 134 Query: 122 LIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + ALYLDGG A R + + +D K+ LQE+ K+ ++P Y++ Sbjct: 135 FVGALYLDGGFLKASAFVVELFEVHIRLMFNRGDFKDYKSLLQEYVQKKYKISPNYRLAK 194 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH+ F V + ++ + G SK+ AE +AA LK Sbjct: 195 ELGPDHNKIFCVELYVNDKFISNGKGKSKKEAEMIAAEMALKTI 238 >gi|148256032|ref|YP_001240617.1| ribonuclease III [Bradyrhizobium sp. BTAi1] gi|146408205|gb|ABQ36711.1| RNAse III [Bradyrhizobium sp. BTAi1] Length = 368 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 99/217 (45%), Positives = 137/217 (63%), Gaps = 3/217 (1%) Query: 12 RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 RIG+ FA+ SLL A+TH S S +SY+RLEFLGD +LGL++S +L+ F SA E Sbjct: 145 RIGHHFADPSLLSTAVTHVSALKSSKKRGDSYQRLEFLGDHVLGLIVSDMLYRSFPSADE 204 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS R LV E+C+ VA+ L L I++ + S+ DV E++I A++L Sbjct: 205 GELSKRLADLVRKESCADVAKSLGLLDDIKLGAVGAGAGARLRKSVLGDVCEAVIGAIFL 264 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG A FV++ W +R K + RD KT LQEWA K TP Y+ R+GP HDP+ Sbjct: 265 DGGYAAAAGFVERNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQ 324 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F V V++ GL A+G+ SKRAAE+VAA+ +++REG+ Sbjct: 325 FRVAVDLPGLESAEGVGGSKRAAEKVAASVMIEREGV 361 >gi|227530552|ref|ZP_03960601.1| ribonuclease III [Lactobacillus vaginalis ATCC 49540] gi|227349558|gb|EEJ39849.1| ribonuclease III [Lactobacillus vaginalis ATCC 49540] Length = 251 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 67/220 (30%), Positives = 102/220 (46%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 L K F N LL +A T +S + + + YER+EFLGD +L L++S ++ F Sbjct: 27 LAKEFDIHFTNPDLLAEAFTQASYVNEHPHQGLKFYERIEFLGDAVLELIVSEYIYKRFP 86 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G+L+ ++V ++ S+ A+E +IR+ + D+ ES I Sbjct: 87 ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARQRPGLLCDIFESFIG 146 Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ALYLD G FV + + DAKT LQE+ V EY + SG Sbjct: 147 ALYLDQGRPAVEKFVRRVIFPKLDLGWFDHAVDAKTSLQEFLQRDGDVDIEYHLLQESGT 206 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++DP F V V G +G SK+ AE AA++ L + Sbjct: 207 ENDPEFKVNVSADGKVIGEGTGSSKKHAEMKAASQALNKL 246 >gi|309805468|ref|ZP_07699513.1| ribonuclease III [Lactobacillus iners LactinV 09V1-c] gi|312872453|ref|ZP_07732522.1| ribonuclease III [Lactobacillus iners LEAF 2062A-h1] gi|312874441|ref|ZP_07734471.1| ribonuclease III [Lactobacillus iners LEAF 2052A-d] gi|312874574|ref|ZP_07734599.1| ribonuclease III [Lactobacillus iners LEAF 2053A-b] gi|315653376|ref|ZP_07906298.1| ribonuclease III [Lactobacillus iners ATCC 55195] gi|325911776|ref|ZP_08174180.1| ribonuclease III [Lactobacillus iners UPII 143-D] gi|308165119|gb|EFO67357.1| ribonuclease III [Lactobacillus iners LactinV 09V1-c] gi|311089965|gb|EFQ48384.1| ribonuclease III [Lactobacillus iners LEAF 2053A-b] gi|311090053|gb|EFQ48467.1| ribonuclease III [Lactobacillus iners LEAF 2052A-d] gi|311092035|gb|EFQ50410.1| ribonuclease III [Lactobacillus iners LEAF 2062A-h1] gi|315489301|gb|EFU78941.1| ribonuclease III [Lactobacillus iners ATCC 55195] gi|325476282|gb|EGC79444.1| ribonuclease III [Lactobacillus iners UPII 143-D] Length = 225 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 4/226 (1%) Query: 1 MSALRYS-TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57 M + + L+++ F N LLE+ALTHSS S+ +Q ++YE+LEFLGD +L L IS Sbjct: 1 MVSESFKNELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ HF + EGEL+ +++V E SQ A E + +++ K ++ D Sbjct: 61 YLYRHFPNMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLED 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 V E+ AL+LD G+ F+ + + G Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYK 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 S P+FTV + ++G +QG+ SK+AAEQVAA+ LK Sbjct: 181 VIDSDEA-QPKFTVQLIVAGENISQGIGRSKKAAEQVAASVALKNI 225 >gi|262373078|ref|ZP_06066357.1| ribonuclease III [Acinetobacter junii SH205] gi|262313103|gb|EEY94188.1| ribonuclease III [Acinetobacter junii SH205] Length = 232 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 115/225 (51%), Gaps = 5/225 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L + L+ RIG+ F LL+ ALTH S+SH + +YERLEFLGD +LG++I+ L++ Sbjct: 8 NKLNDARLQNRIGHQFQQFDLLKLALTHRSVSHKH--NYERLEFLGDSLLGMIIANYLYH 65 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ +LV E ++A +L L+ + +S+ K SI AD VE+ Sbjct: 66 TYPKENEGRLTRMRATLVRQEALGKIANDLQLSRSLILSTGELKSGGHHRESILADTVEA 125 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD---AKTELQEWAHAKFGVTPEYKVT 178 +I A+YLD + W + L + K+ LQE+ A+ P Y+V Sbjct: 126 IIGAIYLDSNDLNLLQSIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 185 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G + F V + G+ G S+R AEQ AAAE+LK Sbjct: 186 DIQGDAPNQHFKVECNVEGMPKFIGEGSSRRFAEQTAAAEILKLL 230 >gi|237746716|ref|ZP_04577196.1| ribonuclease III [Oxalobacter formigenes HOxBLS] gi|229378067|gb|EEO28158.1| ribonuclease III [Oxalobacter formigenes HOxBLS] Length = 273 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 108/220 (49%), Gaps = 6/220 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L+ RIGY F + +LLE A+TH S S + ERLEFLGD +L + + L+ + Sbjct: 7 INLKMLQDRIGYTFHDAALLETAMTHRSYSSHH---NERLEFLGDSLLNCVTAINLYERY 63 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG LS +SLV + ++A +L+L+ F+R+ K SI AD +E+L Sbjct: 64 AALNEGSLSRLRSSLVRQQALYEIACKLELSRFLRLGEGELKAGGFKRPSILADAMEALF 123 Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G E + + + + +DAKT+LQE+ PEY V Sbjct: 124 GAVFLDAGFETVKRVITRLFADMMKELDPETYGKDAKTQLQEYLQGHKMALPEYHVVATR 183 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220 G H+ F V I G S+RA EQ AA + L Sbjct: 184 GAAHNQEFEVECVIGKFDIHVYGTGSSRRAGEQEAARKAL 223 >gi|227510452|ref|ZP_03940501.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190104|gb|EEI70171.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 236 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 72/218 (33%), Positives = 108/218 (49%), Gaps = 5/218 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64 L++ ++ LL++A T +S + +++ YERLEFLGD +L L++S +F + Sbjct: 9 LKQDFNIHIDDQDLLDEAFTQASYVNEHRDQHLKFYERLEFLGDAVLQLIVSEYIFKRYP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +G L+ ++V+ ++ S ARE +IR+ K S+ D+ ES + Sbjct: 69 KLPQGRLTRLRAAMVNEQSFSTFARECHFNKYIRLGKGEEKAGARDRDSLLCDIFESFVG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ALYLD G V FV + + D KTELQE A A V +Y++ GP Sbjct: 129 ALYLDQGKTVVEGFVQQVIFPKLDEGMFAKFFDHKTELQELAQADGPVDIDYELVDEYGP 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 D+D F V V I G+ SK+ AEQ AA E LK Sbjct: 189 DNDRLFKVNVAIDDKLLGVGIGHSKKDAEQRAAQEALK 226 >gi|256847360|ref|ZP_05552806.1| ribonuclease III [Lactobacillus coleohominis 101-4-CHN] gi|256716024|gb|EEU30999.1| ribonuclease III [Lactobacillus coleohominis 101-4-CHN] Length = 233 Score = 136 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 9/227 (3%) Query: 6 YSTLEKRI----GYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIST 57 + L++ + F N LL +A T +S + + E YER+EFLGD +L L +S Sbjct: 2 ITELQQYLADEFDIHFQNPDLLAEAFTQASYVNEHPEQHLKYYERIEFLGDAVLQLFVSE 61 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 ++ + +G+L+ ++V ++ S+ A+E +IR+ + D Sbjct: 62 YIYRRYPELLQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRPGLLCD 121 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + ES I ALYLD G + F+ + + + D KT LQE+ V EY Sbjct: 122 IFESFIGALYLDQGRDAVERFIHRVIFPKLDMGWFDHAVDTKTSLQEFLQRDGDVDIEYH 181 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +G ++ P F V V G AQG SK+ AE AAA+ LK+ Sbjct: 182 LLDETGSENAPEFKVNVSADGQVLAQGTGSSKKHAEMDAAAQALKKL 228 >gi|46445908|ref|YP_007273.1| putative ribonuclease III [Candidatus Protochlamydia amoebophila UWE25] gi|81627660|sp|Q6MEK1|RNC_PARUW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|46399549|emb|CAF22998.1| putative Ribonuclease III [Candidatus Protochlamydia amoebophila UWE25] Length = 242 Score = 136 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 72/219 (32%), Positives = 109/219 (49%), Gaps = 9/219 (4%) Query: 1 MSALRY-----STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILG 52 M+ + + +E ++GY F + LL A H S + +E ERLEFLGD +LG Sbjct: 8 MNPIEHVIRQAPAIEAKLGYTFKDPQLLVLAFVHRSFINENREVNQHNERLEFLGDSVLG 67 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 +LIS L+ EG+LS + LV A +C + LDL+ ++ + R + Sbjct: 68 MLISDYLYCKLPKTPEGQLSYLRSRLVEASSCVHYIQSLDLSGYLLLGKGERMNDGRGRE 127 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGV 171 SI AD+ E++I A+YLDGG++ A F+ K + Q R+ K LQ++ + Sbjct: 128 SILADLFEAIIGAIYLDGGLQAAKDFLFKNFHQHIEIILATPLRNWKALLQDYCQKNYQQ 187 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 TP Y+V SGPDH F + V I +G SK+ Sbjct: 188 TPLYQVLHESGPDHSKVFQISVWIQDRELGRGKGTSKKE 226 >gi|1228146|gb|AAA92440.1| RNase III [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 224 Score = 136 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 116/226 (51%), Gaps = 8/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALS 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S + LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 -RFPRVDEGDMSRMRDPLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 116 Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 117 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G HD FT+ ++SGL P G S+R AEQ AA V K+ Sbjct: 177 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAANSV-KKL 221 >gi|242373525|ref|ZP_04819099.1| ribonuclease III [Staphylococcus epidermidis M23864:W1] gi|242348888|gb|EES40490.1| ribonuclease III [Staphylococcus epidermidis M23864:W1] Length = 248 Score = 136 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 5/216 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 G++F N L ++A +HSS + + + ERLEFLGD +L L +S LF+ EG Sbjct: 25 GFSFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPHLPEG 84 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ ++V + A ++DL I + K S+ +D E+ + ALYLD Sbjct: 85 NLTKMRATIVCEPSLVIFANKIDLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLD 144 Query: 130 GGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G+E F +K + D KT+ QE+ H + Y++ GP H Sbjct: 145 QGLETVWAFAEKVIFPYVEDNELVGVVDFKTQFQEFVHRQNKGDVTYRLIKEEGPAHHRL 204 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 FT V + A A+G +K+ +EQ AA + K Sbjct: 205 FTSEVILENKAVAEGKGKTKKESEQKAAEQAYKSMK 240 >gi|258405510|ref|YP_003198252.1| ribonuclease III [Desulfohalobium retbaense DSM 5692] gi|257797737|gb|ACV68674.1| ribonuclease III [Desulfohalobium retbaense DSM 5692] Length = 237 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 7/230 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIST 57 M +++R+ Y F ++ LL ALTHSS ++ + QE ERLEFLGD +L L IS Sbjct: 1 MDDSVLRLVQQRLQYTFRDQQLLLLALTHSSYANEHPHIQEHNERLEFLGDAVLELAISE 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ + A EG L+ + LVS + + R+L++A + + +I D Sbjct: 61 ELYLRYPEAPEGSLTSLRSKLVSEPALAALGRQLEIAPALFLGRGEESQGGRERDAILCD 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS----GKFRRDAKTELQEWAHAKFGVTP 173 V+ES+ A++LD + A T + + + + + + RD K+ LQE F P Sbjct: 121 VMESIFGAIFLDSDYDRAKTCILELYVDKWPSAPSLGHERLRDFKSRLQECTQQLFKDRP 180 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y + +GP+H + V V++ + A D S + AEQ AA + L+ Sbjct: 181 VYHLVDSTGPEHAKVYHVRVDLPNGSQASAADSSVKKAEQQAARKALESL 230 >gi|297617466|ref|YP_003702625.1| ribonuclease III [Syntrophothermus lipocalidus DSM 12680] gi|297145303|gb|ADI02060.1| ribonuclease III [Syntrophothermus lipocalidus DSM 12680] Length = 232 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 4/211 (1%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL KALTH S S + E+ +RLEFLGD +L ++++ L+ +F EG+L+ Sbjct: 21 DTGLLTKALTHPSYSQENEAVENNQRLEFLGDAVLNMVVAEYLYKNFPERPEGDLTRIRA 80 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +V + +VA L + ++ + SI AD VE+++ A+YLD G+E A Sbjct: 81 KVVCEKALVKVANTLKVGEYLYLGRGEELSGGRKRNSILADTVEAVVGAVYLDQGLEYAR 140 Query: 137 TFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 F+ +Y + + D K++LQE ++ Y + SGP HD F V Sbjct: 141 DFILRYLAQDIHEVAEGNFYDYKSQLQELVQSRGKDNVTYAILEESGPAHDKTFIAGVFY 200 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 AQG+ SK+ AEQ AA +VL + ++ Sbjct: 201 RHKLLAQGVGKSKKEAEQKAAEKVL-QMKVF 230 >gi|260551498|ref|ZP_05825682.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624] gi|260405492|gb|EEW98985.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624] Length = 230 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 113/230 (49%), Gaps = 9/230 (3%) Query: 1 MSALRYS----TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56 M+ ++ L RIGY F LL+ ALTH S+S ++ +YERLEFLGD +LG++I+ Sbjct: 1 MTKHQFKLSDPRLLSRIGYQFKQPELLQLALTHRSVS--HKYNYERLEFLGDSLLGMIIA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L++ + EG L+ +LV E ++A +L L+ + +S+ K SI A Sbjct: 59 NYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILA 118 Query: 117 DVVESLIAALYLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 D VE++I A+YLD ++ +D K+ LQE+ A+ P Sbjct: 119 DTVEAIIGAIYLDSSDLNLLKDIVLKWYVPYLDHIEPTDQLKDPKSRLQEYLQARKKPLP 178 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V G F V + GL G S+R AEQ AAAE+LK Sbjct: 179 VYEVVDIQGDAPHQHFKVECLVDGLPKIYGEGSSRRFAEQAAAAEILKLL 228 >gi|325849059|ref|ZP_08170551.1| ribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480304|gb|EGC83367.1| ribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 238 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 112/219 (51%), Gaps = 7/219 (3%) Query: 13 IGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY F N++L++ ALTHSS + + S ERLEFLGD IL L++S L+ + S E Sbjct: 18 IGYIFKNKNLIDVALTHSSYINESKDKNRSSNERLEFLGDSILDLVVSEELYKNHKSYPE 77 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ + +V + S+ + + +L+S++ S++AD E+ AA+YL Sbjct: 78 GKLTKIRSRIVCTSSFSKASEKFNLSSYLLFGKGEISHNGREKKSVKADTFEAFCAAIYL 137 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D G F+ + + Q + + D KT+LQE+ + +YK+ GP+H Sbjct: 138 DAGYVFLKNFLMENYYQTVKELLENDLLFIDYKTKLQEYFNKTNRTILKYKLAKEEGPEH 197 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F + V + G +K+ AEQ+AA + K+ Sbjct: 198 NKTFYMDVYAKNKKLSTGKGKNKKEAEQMAAMKAYKKLN 236 >gi|313897603|ref|ZP_07831145.1| ribonuclease III [Clostridium sp. HGF2] gi|312957555|gb|EFR39181.1| ribonuclease III [Clostridium sp. HGF2] Length = 227 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 112/227 (49%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIST 57 M + + L+ + A++++ L+ +AL HSS + ++ ERLEF+GD +L L + Sbjct: 1 MDTI-FEWLKNQ-NIAYSDKKLITQALVHSSYVNEHKSYAHDNERLEFMGDAVLQLWTTK 58 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF EG+++ LV E ++ R+L L ++ + K SI AD Sbjct: 59 KLFLLEPELSEGQMTTLRAQLVCEEALAEYNRQLGLGKYLMLGVGEEKTGGRQRDSILAD 118 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + E+L+ A++LD G+E + + + + D KT+LQE+ + T Y+ Sbjct: 119 MFEALLGAVFLDQGMEAIDSILSAVVTPAISRPKSEKVIDYKTKLQEYIQSDSRKTVHYE 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP + P F V+V + + +G SK+ AEQ+AA + ++ Sbjct: 179 TVNVSGPSNKPEFEVIVMLDDINLGRGKGFSKKRAEQMAAKDAFEKM 225 >gi|116327694|ref|YP_797414.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|122284510|sp|Q053L4|RNC_LEPBL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116120438|gb|ABJ78481.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 247 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 112/223 (50%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62 + L K+IG F+ A HSS + E ERLEFLGD +LGL+ + LF Sbjct: 21 FKKLSKKIGIKFSKIEYYNTAFIHSSYKNENPEILEDNERLEFLGDSVLGLVAARSLFQK 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A EGELS + +VS + +A +L+L ++ + + I A++ ESL Sbjct: 81 YPKASEGELSRIKSKIVSTPILNSIAEKLNLGEYLLLGKGEKNSQGKGRRKIAANLFESL 140 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YLD G EVA F+ ++ + + RD KT+LQE++ F P Y++ Sbjct: 141 VGAIYLDRGFEVAEKFIVQHLLEFAENPDMEESVRDYKTQLQEYSQKHFKTLPVYRMKGE 200 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH F V V I A G SK+ AEQ AA E+ R Sbjct: 201 SGPDHSKMFQVSVRIRDQWEASGYGASKKIAEQNAAKELYIRI 243 >gi|300869947|ref|YP_003784818.1| ribonuclease III [Brachyspira pilosicoli 95/1000] gi|300687646|gb|ADK30317.1| ribonuclease III [Brachyspira pilosicoli 95/1000] Length = 229 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 3/226 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58 M EK + Y+F N++ L +A+TH + ++ +RLEFLGD +L L+IS Sbjct: 1 MINKILLDCEKVLQYSFKNKNYLLEAITHRTFANENGNMKYNQRLEFLGDSVLSLIISEH 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 ++ +++ KEG+LS LVS T + ++R+L L F+ + ++ D+ Sbjct: 61 IYKEYNNVKEGKLSKIKAYLVSQNTLANISRKLKLGDFLLLGKGEEASGGRERDNMLEDL 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLD +E FV + +K K D + + Sbjct: 121 FEAIIGAIYLDSNLENTKNFVMRVYKDILNKLDINNFDKDYKTILQEIVQKKYKITPTYK 180 Query: 179 FRSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++D F V V + A G+ SK+ AE AA + L+ Sbjct: 181 SYEYNENDNIMFKVEVYVKTKKYASGIGKSKKEAEINAAKKALEEI 226 >gi|319937586|ref|ZP_08011991.1| ribonuclease III [Coprobacillus sp. 29_1] gi|319807426|gb|EFW04035.1| ribonuclease III [Coprobacillus sp. 29_1] Length = 232 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 104/227 (45%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLIST 57 M L + E F SL ++A TH+S ++ Y + YERLEF+GD +L L +S Sbjct: 1 MKILDFLQAE---NIPFQKLSLYKEAFTHASYANEAHHYNKDYERLEFMGDAVLQLYVSD 57 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF+ F EG L+ + LV E+ ++ ++EL L + + K S+ A+ Sbjct: 58 FLFHLFPDVPEGTLTTLRSKLVREESLARFSKELGLGELLFLGVGEEKSGGRERESVLAN 117 Query: 118 VVESLIAALY-LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + ES I ALY G EV ++ D KT LQE A T Y+ Sbjct: 118 IFESFIGALYLDCGKDEVIKILEQTIFQHVNDLDYDDITDYKTTLQELIQADQRKTVTYE 177 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + SGP + P F V V + + G SK+ AEQ AA + L + Sbjct: 178 LLETSGPSNAPEFKVAVIMDEMRLGVGKGTSKKRAEQQAAKDALNKL 224 >gi|119897933|ref|YP_933146.1| ribonuclease III [Azoarcus sp. BH72] gi|119670346|emb|CAL94259.1| putative Ribonuclease III [Azoarcus sp. BH72] Length = 223 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 105/223 (47%), Gaps = 6/223 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++ +G+ FA LL++ALTH S + ERLEFLGD IL + S L+ F Sbjct: 1 MSVEHLQRALGHQFAQPELLQQALTHRSFGQ---PNNERLEFLGDSILNCVTSIALYERF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +EGELS LV + ++A +L L +R+ K SI AD +E++ Sbjct: 58 GGLREGELSRLRAGLVCQDALHRIAVQLKLGDCLRLGEGELKSGGFRRPSILADALEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA++LD A +D+ + ++ G +D KT LQEW + P Y + + Sbjct: 118 AAVFLDSDFAGAKAVIDRLYAPLLAEVEPGAPAKDPKTALQEWLQGRKSPLPTYVMVQVT 177 Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H F V E+ G S+R AEQ AA L + Sbjct: 178 GEAHAQEFEVACEVEKHKVRTVGRGTSRRIAEQRAAELALAQL 220 >gi|184159116|ref|YP_001847455.1| ribonuclease III [Acinetobacter baumannii ACICU] gi|183210710|gb|ACC58108.1| dsRNA-specific ribonuclease [Acinetobacter baumannii ACICU] Length = 234 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 75/219 (34%), Positives = 110/219 (50%), Gaps = 5/219 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L RIGY F LL+ ALTH S+S ++ +YERLEFLGD +LG++I+ L++ + Sbjct: 16 RLLSRIGYQFKQPELLQLALTHRSVS--HKYNYERLEFLGDSLLGMIIANYLYHAYPHEN 73 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ +LV E ++A +L L+ + +S+ K SI AD VE++I A+Y Sbjct: 74 EGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIY 133 Query: 128 LDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LD ++ +D K+ LQE+ A+ P Y+V G Sbjct: 134 LDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDA 193 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + GL+ G S+R AEQ AAAE+LK Sbjct: 194 PHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILKLL 232 >gi|300691972|ref|YP_003752967.1| ribonuclease III (RNase III) [Ralstonia solanacearum PSI07] gi|299079032|emb|CBJ51694.1| Ribonuclease III (RNase III) [Ralstonia solanacearum PSI07] Length = 256 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 110/221 (49%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S S ERLEFLGD IL ++ +L+ F Sbjct: 1 MSLEALQQRLGYRFSKPELLQQALTHRSHS---AMHNERLEFLGDSILNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L +R+ K SI AD +E++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H+ +F V I L G S+RAAEQ AA L+ Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218 >gi|260583707|ref|ZP_05851455.1| ribonuclease III [Granulicatella elegans ATCC 700633] gi|260158333|gb|EEW93401.1| ribonuclease III [Granulicatella elegans ATCC 700633] Length = 234 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 5/226 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62 + K F N + L++ALTHSS ++ +++ ER+EFLGD +L L IS L+ Sbjct: 9 EKIAKEFQIQFKNENYLKEALTHSSYANEHKDCKGIYNERIEFLGDAVLELFISNWLYRQ 68 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + KEGEL+ +V E+ S +A+E +L ++ + R ++ DV E+ Sbjct: 69 MPTKKEGELTKLRAQIVCEESLSTLAKECELDKYLLLGKGERASKGHENPAVLCDVFEAF 128 Query: 123 IAALYLDGGIEV-AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A+YLD G E + + D KTELQE+ V Y++ Sbjct: 129 VGAIYLDQGFEGASQFLTQVIISKIKDGRFTLVGDFKTELQEYFQRNGNVNIRYELLKEE 188 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 GP H +TV V ++ G +K+AAEQ++A L++ + + Sbjct: 189 GPSHARYYTVQVHVNDKGYEIGEGKTKKAAEQLSARRTLEKLNVIS 234 >gi|17545782|ref|NP_519184.1| ribonuclease III [Ralstonia solanacearum GMI1000] gi|22654059|sp|Q8Y0I1|RNC_RALSO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|17428076|emb|CAD14765.1| probable ribonuclease III (rnase III) protein [Ralstonia solanacearum GMI1000] Length = 256 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 109/221 (49%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S ERLEFLGD IL ++ +L+ F Sbjct: 1 MSLEALQQRLGYRFSKPELLQQALTHRS---HNAMHNERLEFLGDSILNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L +R+ K SI AD +E++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLLLPDELRLGEGELKSGGFRRPSILADALEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H+ +F V I L G S+RAAEQ AA L+ Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218 >gi|212636523|ref|YP_002313048.1| ribonuclease III [Shewanella piezotolerans WP3] gi|226735379|sp|B8CQJ5|RNC_SHEPW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|212558007|gb|ACJ30461.1| Ribonuclease III [Shewanella piezotolerans WP3] Length = 225 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 119/227 (52%), Gaps = 6/227 (2%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + L + +GY FA ++LL++ALTH S S+ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNIPRLCRTLGYEFAEQALLDQALTHRSASN---KHNERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV + +++A E L ++++ K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLD IE V ++ R + ++D KT LQE P YKV Sbjct: 118 EAIIGAIYLDSDIEKCRKLVLNWYASRLRVIEPINQKDPKTLLQEHLQKFRKPLPIYKVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 G H+ FTV + L A G+ S+R AEQ AAA+VL+ Sbjct: 178 HTEGDAHEQTFTVECVVEDLRQAVVGVASSRRKAEQSAAAQVLELIK 224 >gi|29840106|ref|NP_829212.1| ribonuclease III [Chlamydophila caviae GPIC] gi|33301541|sp|Q823R4|RNC_CHLCV RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|29834454|gb|AAP05090.1| ribonuclease III [Chlamydophila caviae GPIC] Length = 237 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 102/224 (45%), Gaps = 4/224 (1%) Query: 1 MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLIS 56 M+ + +E ++ + F LL ALTH S + E ERLEFLGD +L L+++ Sbjct: 1 MNNLINIKEVEAKLNFTFTQPKLLVTALTHPSYRNETVTITEDSERLEFLGDAVLCLIVT 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F S EG LS +L++A +C Q L L + + R TS A Sbjct: 61 EHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEHLLIGKGERIQNERGRTSAYA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 ++ E+++ A+YLDGG+ A + + K LQ+ + P Y+ Sbjct: 121 NLFEAVLGAVYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKQLRTLPVYQ 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 T + P + + V ++ +G SK+ AE++AA + L Sbjct: 181 CTPWTSQQGVPGYHIRVIVNDEVWGEGCALSKKEAEKLAAQKAL 224 >gi|169632753|ref|YP_001706489.1| ribonuclease III [Acinetobacter baumannii SDF] gi|238688259|sp|B0VTM5|RNC_ACIBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|169151545|emb|CAP00312.1| ribonuclease III, ds RNA [Acinetobacter baumannii] Length = 230 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 114/230 (49%), Gaps = 9/230 (3%) Query: 1 MSALRYS----TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56 M+ ++ L RIGY F LL+ ALTH S+S ++ +YERLEFLGD +LG++I+ Sbjct: 1 MTKHQFKLSDPRLLSRIGYQFKQPELLQLALTHRSVS--HKYNYERLEFLGDSLLGMIIA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L++ + EG L+ +LV E ++A +L L+ + +S+ K SI A Sbjct: 59 NYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILA 118 Query: 117 DVVESLIAALYLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 D VE++I A+YLD ++ +D K+ LQE+ A+ P Sbjct: 119 DTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLP 178 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V G F V + GL+ G S+R AEQ AAAE+LK Sbjct: 179 VYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGASRRFAEQAAAAEILKLL 228 >gi|15835187|ref|NP_296946.1| ribonuclease III [Chlamydia muridarum Nigg] gi|270285359|ref|ZP_06194753.1| ribonuclease III [Chlamydia muridarum Nigg] gi|270289375|ref|ZP_06195677.1| ribonuclease III [Chlamydia muridarum Weiss] gi|301336756|ref|ZP_07224958.1| ribonuclease III [Chlamydia muridarum MopnTet14] gi|13878715|sp|Q9PK97|RNC_CHLMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|7190609|gb|AAF39406.1| ribonuclease III [Chlamydia muridarum Nigg] Length = 232 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 106/224 (47%), Gaps = 4/224 (1%) Query: 1 MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIS 56 M + +E ++ + F+ LL ALTH S + + E ERLEFLGD +LGL+++ Sbjct: 1 MQRTVNIQAVESKLKFTFSQPRLLVTALTHPSYRNEFPSDGEDSERLEFLGDAVLGLVVT 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F S EG LS ++LV+AE C ++L L + + + S A Sbjct: 61 EHLFLLFPSLNEGLLSTTRSALVNAEACFNYTQKLSLGEHLLIGRGEKMQSHRGKISAYA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 ++ E+++ A+YLDGG+ A + + + K LQ++ V P Y Sbjct: 121 NLFEAILGAVYLDGGLAPARQIIVPLLPNKEAILPLMLVNPKNRLQQFTQQTLKVLPTYI 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 S D P + V V ++ +G SK+ AE++AA + L Sbjct: 181 ALPWSSEDGTPGYHVQVFVNEKLWGEGFAGSKKEAEKLAAKQAL 224 >gi|197294673|ref|YP_001799214.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma australiense] gi|171854000|emb|CAM11965.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma australiense] Length = 222 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 97/223 (43%), Gaps = 7/223 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLF 60 + K++ N +L KALTHSS S+ QE+ ERLEFLGD I+GLL++ L+ Sbjct: 1 MNTEHFLKKLNIVPKNIALYRKALTHSSYSNEKEFLQENNERLEFLGDAIIGLLMADYLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG ++ + V ++ + A+ ++L +++ + + + SI AD E Sbjct: 61 QKNKE-NEGVMTKKRAQAVCEKSLTIYAKSINLQNYLFLGKGEK-NKDFNTKSIIADAFE 118 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +L A+YLD G A + K+ + +YK+ Sbjct: 119 ALFGAIYLDLGYNSAKKVFQRLVIPHLPKAIDIIDFKTQ--LQEIVQSEKKIIQYKIVSE 176 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V + G +K+ AEQ AA E L + Sbjct: 177 EGPAHSKKFIAEVYLDKKILGSGEGTTKKEAEQKAAQEALSKL 219 >gi|157362928|ref|YP_001469695.1| ribonuclease III [Thermotoga lettingae TMO] gi|189043371|sp|A8F397|RNC_THELT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157313532|gb|ABV32631.1| Ribonuclease III [Thermotoga lettingae TMO] Length = 238 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 119/236 (50%), Gaps = 12/236 (5%) Query: 1 MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRI 50 M+ ++IGY F LL AL HSS +H + ES ERLEFLGD + Sbjct: 1 MNKEEAKILIDFMEKIGYRFYEPELLYNALCHSSYAHEQKQRGRKDVESNERLEFLGDAV 60 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + LL++ L+ F A EG ++ ++ S E +Q+AR+++L ++ + Sbjct: 61 IDLLLAEYLYLEFPEASEGVMAKVKAAIASEEALAQIARDINLGRYMFLGRGEEVSSGRE 120 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAK 168 S+ AD++E+++AA+Y+DGG+ Y+ + A + K D KT LQE A+ Sbjct: 121 RDSLLADMLEAVVAAVYIDGGLTAVKKVFLSYFAKYAKEVVEGKIVFDYKTSLQEITQAR 180 Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + PEY + GP H +FTV + +SG A G S + AE+ AA +++ Sbjct: 181 YRKLPEYVLVNEKGPSHMKKFTVELRLSGKLIAVGEGPSIKEAEKEAARRAIEKLK 236 >gi|197119571|ref|YP_002139998.1| ribonuclease III [Geobacter bemidjiensis Bem] gi|197088931|gb|ACH40202.1| ribonuclease III [Geobacter bemidjiensis Bem] Length = 232 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 117/221 (52%), Gaps = 2/221 (0%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLL 59 M +E R+GY F++R LL +ALTH + + +RLEF GD +L L+S +L Sbjct: 4 MLHDPLEGIEGRLGYRFSDRGLLVEALTHRTYVNEAGGRDNQRLEFFGDAVLDFLLSDML 63 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F ++EGEL+ +LV + ++A ELDL +R+ K S+ AD Sbjct: 64 LVRFPDSREGELTRIRAALVDEASLGKIASELDLGQALRLGRGEEKGGGRQKRSLLADAF 123 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVT 178 E+L+AALYLDGG++ A V+ + RDAKTELQE A G P Y++ Sbjct: 124 EALLAALYLDGGLDPARRVVEALFAPLLSSRDLLSGRDAKTELQETARLFKGELPRYQLK 183 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +GPDHD RFTV V + +G+ +K+ AEQ AA Sbjct: 184 QVTGPDHDKRFTVEVYLGEELMGEGVGRTKKEAEQDAARAA 224 >gi|237748853|ref|ZP_04579333.1| ribonuclease III [Oxalobacter formigenes OXCC13] gi|229380215|gb|EEO30306.1| ribonuclease III [Oxalobacter formigenes OXCC13] Length = 277 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 110/223 (49%), Gaps = 8/223 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + L++RIGY+F LL+ ALTH S S + ERLEFLGD +L + + L+ Sbjct: 11 MMNVNV--LQERIGYSFRQIDLLQTALTHRSFSSHH---NERLEFLGDSLLNCVTAINLY 65 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG LS +SLV + ++A++LD++SF+R+ K SI AD +E Sbjct: 66 ERYVELNEGNLSRLRSSLVRQQALYEIAQKLDMSSFLRLGEGELKAGGFKRPSILADAME 125 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +L A++LD E + + + F +DAKT+LQE+ PEY+V Sbjct: 126 ALFGAIFLDSDFETVRRVITQLFTDMMKGLDPETFGKDAKTQLQEYLQGHKLALPEYQVV 185 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220 G H+ F + I G S+RA EQ AA + L Sbjct: 186 ATHGAAHNQEFEIECTIGKFGIHVFGTGSSRRAGEQEAAQKAL 228 >gi|332703537|ref|ZP_08423625.1| Ribonuclease 3 [Desulfovibrio africanus str. Walvis Bay] gi|332553686|gb|EGJ50730.1| Ribonuclease 3 [Desulfovibrio africanus str. Walvis Bay] Length = 233 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 113/229 (49%), Gaps = 5/229 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57 M R + ++ + Y F + L +ALTHSS ++ ++ ES ERLEFLGD +L L IS Sbjct: 3 MDMDRLAAIQAELDYHFGQPAYLARALTHSSYANEHELALESNERLEFLGDAVLELAISE 62 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF F A EG+L+ + LV +T +Q AR+L L I + S+ AD Sbjct: 63 CLFQRFPMAHEGQLTRIRSRLVKEKTLAQRARDLGLDRLILLGRGEESQGGRDRDSVLAD 122 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 +E+L+ A++LDGG A FV + ++ +D KT LQE +F + P Y Sbjct: 123 ALEALLGAVFLDGGYLAAREFVSRTFQDLLPETADLPKVKDYKTRLQEITQQRFKIRPIY 182 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGPDH + V V + A S + AEQ AA ++ G Sbjct: 183 AQLGTSGPDHARIYEVEVRLPEGASFAATGASLKRAEQNAARLAIEHLG 231 >gi|221135073|ref|ZP_03561376.1| ribonuclease III [Glaciecola sp. HTCC2999] Length = 241 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 124/221 (56%), Gaps = 6/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L++ I Y F + SLL++ALTH S +++ ERLEFLGD +LG+++ LF F + Sbjct: 21 FVKLQRLIDYQFNDVSLLKQALTHKSA---HRQHNERLEFLGDAVLGMIVGEHLFKAFPN 77 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + EG+L+ +++V +T +++A E L FI++ + K SI ADVVES+I A Sbjct: 78 SPEGKLTRMRSAIVKGDTLAEIALEKGLGEFIQLGAGELKSGGKQRYSILADVVESIIGA 137 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G+ F+ ++ R K +DAKT LQE+ ++ P Y+V G Sbjct: 138 IYLDAGMNQCYDFIHAWFGARIAKLDPDVHPKDAKTRLQEYLQSRGIELPVYEVVDIKGK 197 Query: 184 DHDPRFTVVV-EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH+ FTV ++ P Q S++ AEQ+AA L++ Sbjct: 198 DHNQTFTVSCNTVTLSDPIQAQGASRKRAEQIAAQLTLEKL 238 >gi|309776509|ref|ZP_07671491.1| ribonuclease III [Erysipelotrichaceae bacterium 3_1_53] gi|308915737|gb|EFP61495.1| ribonuclease III [Erysipelotrichaceae bacterium 3_1_53] Length = 227 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 111/227 (48%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIST 57 M + + L+ R A+++++L+ +AL HSS + ++ ERLEF+GD +L L + Sbjct: 1 MDTI-FEWLKDR-NIAYSDKTLITQALVHSSYVNEHKSYAHDNERLEFMGDAVLQLWTTK 58 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF EG+++ LV E ++ R+L L ++ + K SI AD Sbjct: 59 KLFLLEPELSEGQMTTLRAQLVCEEALAEYNRQLGLGKYLMLGVGEEKTGGRQRDSILAD 118 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + E+L+ A++LD G+ + + + D KT+LQE+ + T Y+ Sbjct: 119 MFEALLGAVFLDQGMAAIDIILSAVVTPAISRPKSEKVIDYKTKLQEYIQSDSRKTVHYE 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP + P F V+V + + +G SK+ AEQ+AA + ++ Sbjct: 179 TVNVSGPSNKPEFEVIVMLDDINLGRGKGFSKKRAEQMAAKDAFEKM 225 >gi|89898471|ref|YP_515581.1| ribonuclease III [Chlamydophila felis Fe/C-56] gi|123483118|sp|Q253V2|RNC_CHLFF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|89331843|dbj|BAE81436.1| ribonuclease III [Chlamydophila felis Fe/C-56] Length = 237 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 4/224 (1%) Query: 1 MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLIS 56 M+ + +E ++ + F LL ALTH S + E ERLEFLGD +L L+++ Sbjct: 1 MNNLINIKEVEAKLKFTFTQPQLLVTALTHPSYRNETVTITEDSERLEFLGDAVLCLIVT 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F S EG LS +L++A +C Q L L ++ + R TS A Sbjct: 61 EHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLIGKGERIQNERGRTSAYA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 ++ E+++ A+YLDGG+ A + + K LQ+ + P Y+ Sbjct: 121 NLFEAILGAVYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKQLRTLPVYQ 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 T P P + + V ++ +G SK+ AE++AA E L Sbjct: 181 STPWISPQGAPGYHIRVIVNDEIWGEGFALSKKEAEKLAAQEAL 224 >gi|222100439|ref|YP_002535007.1| Ribonuclease 3 [Thermotoga neapolitana DSM 4359] gi|254807907|sp|B9K9K8|RNC_THENN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|221572829|gb|ACM23641.1| Ribonuclease 3 [Thermotoga neapolitana DSM 4359] Length = 240 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 9/227 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58 L+KR+G F + LL +AL HSS ++ + ES E+LEFLGD +L L + + Sbjct: 9 VEELQKRLGVLFNDEELLFRALCHSSYANEQKQAGREDVESNEKLEFLGDAVLELFVCEI 68 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + A+ G+L+ +++ S E ++V+R L+L ++ + K SI AD Sbjct: 69 LYRKYPEAEVGDLARVKSAVASEEVLARVSRRLELGKYLFLGKGEEKTGGRERDSILADA 128 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYK 176 E+L+AALYLD G + + ++ K K D KT LQE + PEY Sbjct: 129 FEALLAALYLDQGYQKIKDLFEDEFESYIEKIMKGEILFDYKTALQEIVQREHKTPPEYV 188 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + F V V ++ A G +K+ AE+ AA + ++ Sbjct: 189 LVRTEKNGSEKLFVVEVRVNDETLAVGRGRTKKEAEKDAARKAYEKL 235 >gi|163750600|ref|ZP_02157837.1| ribonuclease III [Shewanella benthica KT99] gi|161329595|gb|EDQ00586.1| ribonuclease III [Shewanella benthica KT99] Length = 230 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 115/227 (50%), Gaps = 6/227 (2%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + L + +GY F ++LL++ALTH S + ERLEFLGD IL ++IS L Sbjct: 6 MEPIKNIPRLCRTLGYQFNQQALLDQALTHRSA---NSKHNERLEFLGDSILSIIISDAL 62 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F EG+LS +LV + +++ E L ++++ K SI AD V Sbjct: 63 YHQFPKVTEGDLSRMRATLVCGKMLAEIGFEFKLGDYLKLGPGELKSGGFRRESIIADGV 122 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLD E V +++ R A+ ++D KT LQE P YKVT Sbjct: 123 EAIIGAIYLDADFETCRARVLSWYESRLAIIEPINQKDPKTLLQELLQGFKKPLPVYKVT 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 G H FTV + L G+ S+R AEQ+AAA+VL+ Sbjct: 183 DIKGEAHAQTFTVECSVEELKKPLVGVASSRRKAEQIAAAKVLELIK 229 >gi|114320503|ref|YP_742186.1| ribonuclease III [Alkalilimnicola ehrlichii MLHE-1] gi|122311783|sp|Q0A8Z1|RNC_ALHEH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|114226897|gb|ABI56696.1| RNAse III [Alkalilimnicola ehrlichii MLHE-1] Length = 228 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L+ R+GY F LL++ALTH S++ ERLEFLGD IL +I+ L++ A Sbjct: 6 DALQDRLGYRFRRPELLDEALTHRSVT---GPDNERLEFLGDGILNFVIADELYHRRPDA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LS +LV+ T +++ + LD+ + +R+ K SI AD VE+L A+ Sbjct: 63 TEGVLSRLRATLVNGRTLAEIGKGLDVGTALRLGGGEMKSGGQRRKSILADAVEALFGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLDGG + + + + ++ R +L + +D KT LQE A P Y+V SG Sbjct: 123 YLDGGFDPSRETILRLYRDRLASLPTEAELKDPKTRLQEHLQAGRRPLPRYEVLEVSGQS 182 Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 HD F V + A A+G S+R AEQ AA ++LKR Sbjct: 183 HDQTFRVACRLQDAAVTAEGEAGSRRKAEQQAAEQMLKRL 222 >gi|312127786|ref|YP_003992660.1| ribonuclease iii [Caldicellulosiruptor hydrothermalis 108] gi|311777805|gb|ADQ07291.1| ribonuclease III [Caldicellulosiruptor hydrothermalis 108] Length = 222 Score = 135 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 1/218 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +EK +GY F +++LL ALTH S +HS + YERLEFLGD L L++S LF +F Sbjct: 2 EEIEKALGYKFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVNFPDL 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V ++T S+VA +L+L + I + + SI ADV+E++ A+ Sbjct: 62 SEGELTNIRAAVVCSQTLSEVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +++ G + + K K+ + + + + + + Sbjct: 122 FIESGFDKLEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQREGKKKIVYKDCEIIE-K 180 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + + G ++G SK+ A+Q AA + L G Sbjct: 181 KYFKSELFVEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218 >gi|312877236|ref|ZP_07737204.1| ribonuclease III [Caldicellulosiruptor lactoaceticus 6A] gi|311795950|gb|EFR12311.1| ribonuclease III [Caldicellulosiruptor lactoaceticus 6A] Length = 222 Score = 135 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 1/218 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+ +GY F +++LL ALTH S +HS + YERLEFLGD L L +S LF HF Sbjct: 2 EEIERALGYTFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPEL 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V ++T S+VA +L+L + I + + SI ADV+E++ A+ Sbjct: 62 SEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +++ G ++ + K K+ + + + + + + Sbjct: 122 FIESGFDIVEKIIVNLLKPYIQKAVTGKLFYDYKTKLQEIVQREGNKKIVYKDCEIIE-K 180 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + I G ++G SK+ A+Q AA + L G Sbjct: 181 KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218 >gi|299769157|ref|YP_003731183.1| ribonuclease III [Acinetobacter sp. DR1] gi|298699245|gb|ADI89810.1| ribonuclease III [Acinetobacter sp. DR1] Length = 230 Score = 135 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 115/230 (50%), Gaps = 9/230 (3%) Query: 1 MSALRYS----TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56 M ++ L RIGY F LL+ ALTH S+S ++ +YERLEFLGD +LG++I+ Sbjct: 1 MIKHQFKLSDPRLLSRIGYQFKQLELLQLALTHRSVS--HKYNYERLEFLGDSLLGMIIA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L++ + + EG L+ +LV E ++A +L L+ + +S+ K SI A Sbjct: 59 NYLYHAYPNENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILA 118 Query: 117 DVVESLIAALYLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 D VE++I A+Y+D G ++ +D K+ LQE+ A+ P Sbjct: 119 DTVEAIIGAIYIDSGDLNLLTDIVLKWYVPYLDHIEPTDQLKDPKSRLQEYLQARKKPLP 178 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V G F V I GL+ G S+R AEQ AAAE+LK Sbjct: 179 VYEVVDIQGDAPHQHFKVECLIDGLSKIHGEGSSRRFAEQAAAAEILKLL 228 >gi|83311357|ref|YP_421621.1| dsRNA-specific ribonuclease [Magnetospirillum magneticum AMB-1] gi|82946198|dbj|BAE51062.1| dsRNA-specific ribonuclease [Magnetospirillum magneticum AMB-1] Length = 228 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 83/220 (37%), Positives = 123/220 (55%), Gaps = 4/220 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L +G+AFA LL +ALTH S+ + + YERLEFLGDR+LGL+++ +LF+ Sbjct: 6 AELSALLGHAFARPELLAQALTHPSMHQGRKSRTSDPYERLEFLGDRVLGLVVAEMLFSR 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F + EG L+ R +LV E +++A E+ L + ++ I AD E++ Sbjct: 66 FPNEAEGALARRHAALVRREAVARIATEIGLGRCLVLAKGEDDAGGRANPGILADACEAV 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I ALY D G VA +FV W+ ++ +DAKT LQEWA + P Y+V + G Sbjct: 126 IGALYADAGFAVAASFVRSRWEPMMEEALAPPKDAKTGLQEWAQGRGKPLPHYQVLGQEG 185 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P H+P F + V + G+ A G SKR AEQ AA +L++ Sbjct: 186 PPHEPIFLIEVSVEGVGSAVGRGASKRVAEQAAAGLLLEQ 225 >gi|120599802|ref|YP_964376.1| ribonuclease III [Shewanella sp. W3-18-1] gi|146292262|ref|YP_001182686.1| ribonuclease III [Shewanella putrefaciens CN-32] gi|189043352|sp|A4Y4K4|RNC_SHEPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043355|sp|A1RMC7|RNC_SHESW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|120559895|gb|ABM25822.1| RNAse III [Shewanella sp. W3-18-1] gi|145563952|gb|ABP74887.1| RNAse III [Shewanella putrefaciens CN-32] gi|319425561|gb|ADV53635.1| ribonuclease III [Shewanella putrefaciens 200] Length = 226 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + L + +GY F LL +ALTH S ++ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNLPRLCRTLGYEFTQIELLTQALTHRSAAN---KHNERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV +T + +A+E L ++ + K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVRGDTLTIIAQEFKLGDYLYLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+YLD +EV + ++ +R + ++DAKT LQE+ P+Y+V Sbjct: 118 EAIIGAIYLDSDLEVCRKLLLTWYAERLAEIQPGVSQKDAKTLLQEYLQGLKKPLPDYQV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 G HD FTV I L+ + G+ S+R AEQ+AAA+VL+ Sbjct: 178 INIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAAAQVLELLK 225 >gi|83748443|ref|ZP_00945465.1| Ribonuclease III [Ralstonia solanacearum UW551] gi|207725215|ref|YP_002255611.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum MolK2] gi|207743590|ref|YP_002259982.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum IPO1609] gi|83724854|gb|EAP72010.1| Ribonuclease III [Ralstonia solanacearum UW551] gi|206590449|emb|CAQ37411.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum MolK2] gi|206594989|emb|CAQ61916.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum IPO1609] Length = 256 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 110/221 (49%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S S ERLEFLGD IL ++ +L+ F Sbjct: 1 MSLDALQQRLGYRFSKPELLQQALTHRSHS---AMHNERLEFLGDSILNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L +R+ K SI AD +E++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H+ +F V I L G S+RAAEQ AA L+ Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218 >gi|303231076|ref|ZP_07317816.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6] gi|302514207|gb|EFL56209.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6] Length = 247 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 103/224 (45%), Gaps = 6/224 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 L R+ + S+L+ A TH+S ++ ++ +RLEFLGD +L L+I LF Sbjct: 20 LHELVSRLHIPNIDISILDCAFTHTSYANEHKSKHIHHNQRLEFLGDAVLDLIIGEYLFT 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + V ++ + V+R L L ++ + + S SI AD ES Sbjct: 80 TYPDMSEGNLTKIKAATVCEDSLATVSRTLHLGDYLLLGHGEKSSGGSDRKSILADTFES 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI ALY+ + FV + GK +D KT LQE+ Y + Sbjct: 140 LIGALYITTDYKTVMDFVLHQLAPNLKQALEGKRGKDYKTLLQEFVQRDGDKHIVYSLIS 199 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH F + V I G+ G SK+ AEQ AA L+R Sbjct: 200 ESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAAQLTLERL 243 >gi|239636288|ref|ZP_04677290.1| ribonuclease III [Staphylococcus warneri L37603] gi|239597643|gb|EEQ80138.1| ribonuclease III [Staphylococcus warneri L37603] Length = 243 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 62/217 (28%), Positives = 98/217 (45%), Gaps = 5/217 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ + N L ++A +HSS + + + ERLEFLGD +L L +S LF+ E Sbjct: 24 LGFEYNNIELYQQAFSHSSFINDFNMDRLDHNERLEFLGDAVLELTVSRYLFDKHPDLPE 83 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ ++V + A ++ L I + K S+ +D E+ + ALYL Sbjct: 84 GNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYL 143 Query: 129 DGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 D G++ F DK D KT+ QE+ H + Y++ GP H Sbjct: 144 DQGLDTVWDFADKIIFPYVEDDELDGVVDFKTQFQEFVHRQNKGDVTYRLIKEEGPAHHR 203 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 FT V + A A+G +K+ +EQ AA K+ Sbjct: 204 LFTSEVILEKQAIAEGQGKTKKESEQKAAERAYKQMK 240 >gi|325275444|ref|ZP_08141375.1| ribonuclease III [Pseudomonas sp. TJI-51] gi|324099420|gb|EGB97335.1| ribonuclease III [Pseudomonas sp. TJI-51] Length = 229 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 114/229 (49%), Gaps = 10/229 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + + LE+++GY F N+ + ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSASLARLERKLGYTFKNQDQMLLALTHRSYA---GRNNERLEFLGDAILNFVAGEALFE 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS LV ET +++AR DL ++R+ S K SI AD +E+ Sbjct: 58 RFPQAREGQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD +E A V + +D KT LQE+ ++ P Y+V Sbjct: 118 LIGAIYLDADMETARERVLAWLANEFEGLTLVDTNKDPKTRLQEFLQSRSCELPRYEVVD 177 Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G H F V E+ + ++G S+R AEQVAAA L G+ Sbjct: 178 IQGEPHCRTFFVECEVVLLNNK--SRGQGVSRRIAEQVAAASALIALGV 224 >gi|332296458|ref|YP_004438381.1| Ribonuclease 3 [Thermodesulfobium narugense DSM 14796] gi|332179561|gb|AEE15250.1| Ribonuclease 3 [Thermodesulfobium narugense DSM 14796] Length = 228 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 119/223 (53%), Gaps = 9/223 (4%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLF 60 + S LE+ +GY F N+ L +LTHSS S+++ E +ERLEFLGD +L L++S LF Sbjct: 4 RINLSKLEEDLGYVFTNKKWLMTSLTHSSYSYNHPEVKDFERLEFLGDAVLKLVVSHKLF 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG++S LVS + +++A++L+L +++ + S R SI + E Sbjct: 64 VLYPEMSEGDMSKLRAYLVSDKHLTKIAKKLNLQNYLLIGSSERTIK----DSILSASFE 119 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +++ A+Y+D ++ +DK +K ++ D+KT LQE + FGV PEYKV Sbjct: 120 AILGAVYMDSSLKQCYKIIDKLMN---IKIEEYEEDSKTVLQELTQSLFGVLPEYKVIDV 176 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H P F V + I SK+ A+ AA + L Sbjct: 177 RGPSHSPIFEVQLSIDNKFFYTATGSSKKQAQSEAAKKALNDL 219 >gi|239993708|ref|ZP_04714232.1| ribonuclease III [Alteromonas macleodii ATCC 27126] Length = 228 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + Y L K IGY F N +LLE+ALTH S + + ERLEFLGD ILG+++ L Sbjct: 1 MQGIDKYRRLYKAIGYTFTNEALLEQALTHRSAAK---QHNERLEFLGDAILGMIVGETL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F + EG+L+ ++LV +T +++A+E + + + K +SI AD V Sbjct: 58 FKRFPTVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+++ A+YLD G++ +D+ W+ R +D+KT LQE+ + P Y+V Sbjct: 118 EAILGAIYLDSGMDEVRGVIDRLWETRINKLDPNAHPKDSKTRLQEFLQGRKQALPTYEV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223 SG DH F V ++ L A S+R AEQ AA L++ Sbjct: 178 LSISGKDHAQTFEVSCQVESLPEAVVASGNSRRKAEQEAARLTLEKL 224 >gi|45359089|ref|NP_988646.1| ribonuclease III family protein [Methanococcus maripaludis S2] gi|45047964|emb|CAF31082.1| Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain [Methanococcus maripaludis S2] Length = 230 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 57/227 (25%), Positives = 97/227 (42%), Gaps = 6/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L ++ F + ++ ++A HSS + + E ERLE+LGD +L L+IS Sbjct: 1 MMK-NFEKLLSKLDIQFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLDLIIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EGE+S V A++L +++ + +I + Sbjct: 60 EYLFKKENL-SEGEMSKLRAKYVCESALFTYAKKLKFNNYVLLGKGEINSKGYNKPAIVS 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 DV E+ IAA+YLD G++ FV ++ +S K + + Y Sbjct: 119 DVFEAFIAAIYLDQGLDSVKKFVYEFIIPIIEESSKELFIDYKTKLQEFPELINKSINYV 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G HD +F + V+ +G+ SK+ AE AA L + Sbjct: 179 NLEETGEAHDKKFVIAVKSGRKILGKGIGKSKKEAEMKAAKNALLKL 225 >gi|254499135|ref|ZP_05111825.1| ribonuclease III [Legionella drancourtii LLAP12] gi|254351674|gb|EET10519.1| ribonuclease III [Legionella drancourtii LLAP12] Length = 228 Score = 135 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 116/225 (51%), Gaps = 6/225 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +RI Y F + L++ALTH S+ +YER EFLGD IL +I+ LF+ Sbjct: 1 MKIDLERLCRRIDYHFEKPAFLKQALTHCSVGSE---NYERFEFLGDSILSFVIANELFH 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F S EG LS + LV + ++ARELDL F+ + K SI +D +E+ Sbjct: 58 RFPSQSEGHLSRLRSFLVRGDMLVEIARELDLGDFLFLGQGELKSGGFRRASILSDALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA++ DGG++ A + K ++ R +D+KT LQE+ A+ PEY + Sbjct: 118 VFAAVFFDGGVDAAKEVILKLYRSRLEDPNLNDCLKDSKTRLQEYLQAEKIALPEYALIK 177 Query: 180 RSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G +H+ F + + QG ++R AEQ+AA +L++ Sbjct: 178 VEGDEHEQLFYITCTVEAEKLVTQGEGSNRRKAEQLAAKAMLEQL 222 >gi|149910155|ref|ZP_01898801.1| ribonuclease III [Moritella sp. PE36] gi|149806741|gb|EDM66705.1| ribonuclease III [Moritella sp. PE36] Length = 223 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 120/225 (53%), Gaps = 6/225 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L+ +GY + + LL++ALTH S Y + ERLEFLGD +LG +IS LF Sbjct: 1 MTIILERLQTVLGYQYQDAGLLQQALTHRSA---YYKHNERLEFLGDSVLGFIISDALFR 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+LS +LV T +++ARE +L+ + + K SI AD VE+ Sbjct: 58 QFPEVPEGDLSRMRATLVKGLTLAEIAREFELSECLILGPGELKSGGFRRESILADTVEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD IE V ++ R ++ G ++DAKT+LQEW + P Y+V Sbjct: 118 LIGAMYLDSDIEKTRERVLAWYASRLATIEPGIGQKDAKTQLQEWLQGRKQPLPLYQVVE 177 Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ FT+ I GL P +G S+R AEQ AA + L++ Sbjct: 178 VRGEAHNQEFTIHCVIEGLDHPVEGKGTSRRKAEQEAAQKALEQI 222 >gi|332140432|ref|YP_004426170.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype'] gi|327550454|gb|AEA97172.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype'] Length = 228 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + Y L K IGY F N +LLE+ALTH S + + ERLEFLGD ILG++I L Sbjct: 1 MQGIDKYLRLYKAIGYTFNNEALLEQALTHRSAAK---QHNERLEFLGDAILGMIIGETL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F + EG+L+ ++LV +T +++A+E + + + K +SI AD V Sbjct: 58 FKRFPTVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+++ A+YLD G++ +D+ W+ R + +D+KT LQE+ + P Y+V Sbjct: 118 EAILGAIYLDSGMDEVRGVIDRLWESRINQLDPNAHPKDSKTRLQEFLQGRKQALPTYEV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223 SG DH F V ++ L A S+R AEQ AA L++ Sbjct: 178 LSISGKDHAQTFEVCCKVESLPDAVVASGNSRRKAEQEAARLTLEKL 224 >gi|56964064|ref|YP_175795.1| ribonuclease III [Bacillus clausii KSM-K16] gi|81365967|sp|Q5WFM6|RNC_BACSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56910307|dbj|BAD64834.1| ribonuclease III [Bacillus clausii KSM-K16] Length = 260 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 5/215 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 ++ L R G F NR LL +A THSS + + ERLEFLGD +L L +S Sbjct: 30 KKQFDDLLVRTGLTFENRKLLIQAFTHSSYVNEQRIFSSSDNERLEFLGDAVLELAVSQY 89 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF + + EG+++ S+V + ++ A EL + + ++ ADV Sbjct: 90 LFKTYKNMSEGDMTKLRASIVCEPSLARFAEELQFGKLVLLGKGEEVTGGRTRPALLADV 149 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ I ALY+D G+E F+ ++ + + ++ D K++LQE+ Y + Sbjct: 150 FEAFIGALYMDQGLEPVFMFLARFMYPKIKEGAFTYKMDFKSQLQEFVQRDNRGQIRYLI 209 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 GP HD F V+++ G SK+ AE Sbjct: 210 VQERGPAHDREFVSDVQLNEETIGTGTGRSKKEAE 244 >gi|203284601|ref|YP_002222341.1| ribonuclease III [Borrelia duttonii Ly] gi|203288135|ref|YP_002223150.1| ribonuclease III [Borrelia recurrentis A1] gi|201084044|gb|ACH93635.1| ribonuclease III [Borrelia duttonii Ly] gi|201085355|gb|ACH94929.1| ribonuclease III [Borrelia recurrentis A1] Length = 243 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 114/226 (50%), Gaps = 5/226 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59 + + + F + LL +L+HSS ++ + + + ERLEFLGD +L L+I+ L Sbjct: 13 KQKLNEFLMGLHIDFNDIYLLNMSLSHSSYANEFDQKYANNERLEFLGDSVLNLIITDYL 72 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + EGELS + +VS ++ S +AREL+L ++I + + I AD + Sbjct: 73 YKFYPDKSEGELSKARSYIVSEDSLSSIARELNLGNYILLGRGEENNDGRNKKGILADAI 132 Query: 120 ESLIAALYLDGGIEV--AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + ALYLDGG R + + +D K+ LQE+ K+ ++P YK+ Sbjct: 133 EAFVGALYLDGGFSKASTFVVELFEVHIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 192 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH+ F V + ++ + G SK+ AE +AA LK Sbjct: 193 AKELGPDHNKIFCVELYVNDKFVSNGKGKSKKEAEMIAAEMALKNI 238 >gi|314933411|ref|ZP_07840776.1| ribonuclease III [Staphylococcus caprae C87] gi|313653561|gb|EFS17318.1| ribonuclease III [Staphylococcus caprae C87] Length = 245 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 5/216 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 G++F N L ++A +HSS + + + ERLEFLGD +L L +S LF+ EG Sbjct: 25 GFSFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPHLPEG 84 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ ++V + A ++DL I + K S+ +D E+ + ALYLD Sbjct: 85 NLTKMRATIVCEPSLVIFANKIDLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLD 144 Query: 130 GGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G++ F +K D KT+ QE+ H + Y++ GP H Sbjct: 145 QGLDTVWKFAEKVIFPYVEDDELVGVVDFKTQFQEYVHRQNKGDVTYRLIKEEGPAHHRL 204 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 FT V + A A+G +K+ +EQ AA + K Sbjct: 205 FTSEVILENNAVAEGKGKTKKESEQKAAEQAYKIMK 240 >gi|157960865|ref|YP_001500899.1| ribonuclease III [Shewanella pealeana ATCC 700345] gi|189043351|sp|A8H1C7|RNC_SHEPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157845865|gb|ABV86364.1| Ribonuclease III [Shewanella pealeana ATCC 700345] Length = 225 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 6/227 (2%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + L + +GY F ++ L++ALTH S S+ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNIPRLCRTLGYEFNEKAFLDQALTHRSASN---KHNERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F +A EG+LS +LV + +++A E L ++++ K SI AD V Sbjct: 58 YHQFPAATEGDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLD IE V +++ R + ++D KT LQE+ P Y+V Sbjct: 118 EAIIGAIYLDSDIENCRQLVLNWYESRLKVIEPINQKDPKTLLQEYLQKYRKPLPVYRVA 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 G H+ FTV + L+ A G+ S+R AEQ AAA+VL+ Sbjct: 178 HTEGDAHEQTFTVECIVEDLSQAVVGVASSRRKAEQSAAAQVLELIK 224 >gi|259503531|ref|ZP_05746433.1| ribonuclease III [Lactobacillus antri DSM 16041] gi|259168609|gb|EEW53104.1| ribonuclease III [Lactobacillus antri DSM 16041] Length = 232 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 9/227 (3%) Query: 6 YSTLE----KRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIST 57 L+ K F++ LL +A T +S + + YER+EFLGD +L L++S Sbjct: 2 IEELQDYLAKEFDIHFSDPRLLAEAFTQASYVNEHPNQNLKFYERIEFLGDAVLELIVSE 61 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 ++ + +G L+ ++V ++ S+ A+E +IR+ + D Sbjct: 62 YIYKRYPELPQGRLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEELAGARQRPGLLCD 121 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + ES + ALYLD G FV + + + DAKT LQE+ V EY Sbjct: 122 IFESFVGALYLDQGRPAVEKFVQRVIFPKLDMGWFDHAVDAKTSLQEFLQRDGDVLIEYH 181 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + SG +++P F V V G A G SK+ AE AA LK+ Sbjct: 182 LLEESGTENNPAFHVDVAADGQVIADGQGSSKKQAEMQAAQRALKKL 228 >gi|223043742|ref|ZP_03613785.1| ribonuclease III [Staphylococcus capitis SK14] gi|222442839|gb|EEE48941.1| ribonuclease III [Staphylococcus capitis SK14] Length = 245 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 5/216 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 G+ F N L ++A +HSS + + + ERLEFLGD +L L +S LF+ EG Sbjct: 25 GFNFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPHLPEG 84 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ ++V + A ++DL I + K S+ +D E+ + ALYLD Sbjct: 85 NLTKMRATIVCEPSLVIFANKIDLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLD 144 Query: 130 GGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G++ F +K D KT+ QE+ H + Y++ GP H Sbjct: 145 QGLDTVWKFAEKVIFPYVEDDELVGVVDFKTQFQEYVHRQNKGDVTYRLIKEEGPAHHRL 204 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 FT V + A A+G +K+ +EQ AA + K Sbjct: 205 FTSEVILENNAVAEGKGKTKKESEQKAAEQAYKSMK 240 >gi|312984414|ref|ZP_07791749.1| ribonuclease III [Lactobacillus crispatus CTV-05] gi|310894189|gb|EFQ43276.1| ribonuclease III [Lactobacillus crispatus CTV-05] Length = 229 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 98/230 (42%), Gaps = 10/230 (4%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55 M + + L+ F N LLE+A THSS S+ + YE+LEFLGD +L L + Sbjct: 1 MVSTKFLKKLKDDYNIEFNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S ++ H+ EGEL+ +++V E S+ A E I + + K ++ Sbjct: 61 SNYVYLHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 DV E+ AL+LD G+ F+ K + + G Sbjct: 121 EDVFEAFNGALFLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIE 180 Query: 176 KVTFRSG--PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P H F V ++I+G ++G +K+AAEQ AA L++ Sbjct: 181 YTVISESQLPSH---FVVELKINGKVESKGEGHNKKAAEQQAAKVALQKL 227 >gi|295693172|ref|YP_003601782.1| ribonuclease iii [Lactobacillus crispatus ST1] gi|295031278|emb|CBL50757.1| Ribonuclease III [Lactobacillus crispatus ST1] Length = 229 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 98/230 (42%), Gaps = 10/230 (4%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55 M + + L+ F + LLE+A THSS S+ + YE+LEFLGD +L L + Sbjct: 1 MVSTKFLKKLKDEYNIVFNDEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S ++ H+ EGEL+ +++V E S+ A E I + + K ++ Sbjct: 61 SNYVYLHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 DV E+ AL+LD G+ F+ K + + G Sbjct: 121 EDVFEAFNGALFLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIE 180 Query: 176 KVTFRSG--PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P H F V ++I+G ++G +K+AAEQ AA L++ Sbjct: 181 YTVISESQLPSH---FVVELKINGKVESKGEGHNKKAAEQQAAKVALQKL 227 >gi|73662845|ref|YP_301626.1| ribonuclease III [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|90101648|sp|Q49X17|RNC_STAS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|72495360|dbj|BAE18681.1| dsRNA-specific ribonuclease RNase III [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 244 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 100/232 (43%), Gaps = 8/232 (3%) Query: 1 MSALRYSTLEKR---IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGL 53 M + EK+ + F L ++A +HSS + + + ERLEFLGD +L L Sbjct: 9 MVQTFQNKFEKKMQELNLDFNRVDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLEL 68 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +S LF+ + EG L+ ++V + A ++ L I + K S Sbjct: 69 TVSRYLFDKYPELPEGNLTKMRATIVCEPSLVIFANKIQLNDLILLGKGEEKTGGRTRPS 128 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVT 172 + +D E+ + ALYLD G+E F ++ D KT+ QE+ H + Sbjct: 129 LVSDAFEAFVGALYLDQGLEAVWQFSEQIIFPYVEDDELDGVVDFKTQFQEYVHRQNKGD 188 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y++ GP H FT V + A A+G +K+ +EQ AA K Sbjct: 189 VTYRLINEEGPAHHRLFTSEVILEEDAVAEGKGKTKKESEQKAAERAYKILK 240 >gi|303229664|ref|ZP_07316452.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a] gi|302515789|gb|EFL57743.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a] Length = 247 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 103/224 (45%), Gaps = 6/224 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 L R+ + S+L+ A TH+S ++ ++ +RLEFLGD +L L+I LF Sbjct: 20 LHELVSRLHIPNIDISILDCAFTHTSYANEHKFKHIHHNQRLEFLGDAVLDLIIGEYLFT 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + V ++ + V+R L L ++ + + S SI AD ES Sbjct: 80 TYPDMSEGNLTKIKAATVCEDSLATVSRTLHLGDYLLLGHGEKSSGGSDRKSILADTFES 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI ALY+ + FV + GK +D KT LQE+ Y + Sbjct: 140 LIGALYITTDYKTVMDFVLHQLAPNLKQALEGKRGKDYKTLLQEFVQRDGDKHIVYSLIS 199 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH F + V I G+ G SK+ AEQ AA L+R Sbjct: 200 ESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAAQLTLERL 243 >gi|332653520|ref|ZP_08419265.1| ribonuclease III [Ruminococcaceae bacterium D16] gi|332518666|gb|EGJ48269.1| ribonuclease III [Ruminococcaceae bacterium D16] Length = 226 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 119/206 (57%), Gaps = 3/206 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 +TLE+++GY F NR LLE ALTHSS ++ + +S ERLEFLGD ILG++++ L+ Sbjct: 2 TTLEEKLGYQFQNRELLENALTHSSCANESRGKLQSNERLEFLGDSILGMVVADHLYRGH 61 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EGEL+ +LV E+ +VA+ LDL S++ + SIQAD VE+++ Sbjct: 62 PDLPEGELTRVRAALVCEESLVEVAQALDLGSYLLLGKGEEAGGGRTRPSIQADAVEAVL 121 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AA+YLDGGI A + KY R ++ RD KT LQE + G +Y++ GP Sbjct: 122 AAVYLDGGIGSARKIIQKYILCREIEGITSPRDYKTALQELVQRESGQVLKYRLVGSQGP 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 DH RF V V+++G G SK+ Sbjct: 182 DHAKRFFVDVDLNGEPVGSGEGHSKK 207 >gi|114797101|ref|YP_759604.1| ribonuclease III [Hyphomonas neptunium ATCC 15444] gi|114737275|gb|ABI75400.1| ribonuclease III [Hyphomonas neptunium ATCC 15444] Length = 234 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 118/222 (53%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 ++ IG+ F + ++LE+ALTH S + S +RLEFLGDR+L L+I+ L Sbjct: 10 LKEAQEIIGFKFKDAAILERALTHPSAIPPSGDTVKLSNQRLEFLGDRVLNLIIAERLIE 69 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 S EG+L+ R N LV C++ R L L FI +S S D E+ Sbjct: 70 RRQSDSEGDLAPRLNRLVKKGACAEAMRFLGLQRFILLSESEVAAGGHDRESTLGDACEA 129 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +IAA+Y +GG+ A F+++ W + +D KT LQEWA + P+Y VT RS Sbjct: 130 VIAAIYQEGGLAAARKFIERAWAPQFENVPAETKDPKTLLQEWAQGQGHPLPDYVVTGRS 189 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH P++ V V ++ + A SKR AE+ AAA +L+ Sbjct: 190 GPDHAPQYEVEVRLA-VGKATATGPSKREAERHAAALMLRTL 230 >gi|254455346|ref|ZP_05068775.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211] gi|207082348|gb|EDZ59774.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211] Length = 220 Score = 134 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 Y +LEK+I F N +LL ++LTH S H+ ++ E++EFLGDR+LGL+I+ L Sbjct: 1 MKKNYQSLEKKINIKFKNTNLLIQSLTHKS--HNSLKNNEKIEFLGDRVLGLVIAKKLLE 58 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + KEG L +F SLV+ TC ++A+ ++L +I + +L I +D E+ Sbjct: 59 IYPDEKEGILDKKFASLVNKRTCLEIAKNINLEKYIL-TFNLNNKKIKIEDKIISDCCEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LI ALYLD G+ + + WK KS + DAKT+LQE A F P YK+ + Sbjct: 118 LIGALYLDKGLNITEKIILDLWKNHIKKSVVTQIDAKTKLQELALKNFKKLPIYKLISNT 177 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H P F V V++ + SK+ AEQ AA E LK Sbjct: 178 GPRHKPLFKVGVKLPNTKYFIALGKSKKDAEQNAAIECLKN 218 >gi|327538797|gb|EGF25444.1| ribonuclease III [Rhodopirellula baltica WH47] Length = 297 Score = 134 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 3/221 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++ +GY F + LL ALTH+S + S ERLEFLGD +LGL + LFN + Sbjct: 64 KIERCQEILGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCEWLFNEYP 123 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ +++VS +C +VA +L L + V + S+ S+ +DV E++IA Sbjct: 124 EYSEGDLTKIKSAVVSRRSCGKVACKLGLDQCLIVGRGV-TRNRSYPKSLVSDVFEAVIA 182 Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALY+DGG E+ + + + + + K+ LQ++A + TP YK+ +G Sbjct: 183 ALYIDGGPEIVRDRLKLWLAEEVNLAVDTQGSGNHKSVLQQFAQRELSATPVYKLIRETG 242 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH F + + A +K+ AEQ AAA L Sbjct: 243 PDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAANALAEL 283 >gi|293402241|ref|ZP_06646379.1| ribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304348|gb|EFE45599.1| ribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 227 Score = 134 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 113/228 (49%), Gaps = 8/228 (3%) Query: 1 MSALRYSTLE-KRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIS 56 M+ + + LE KRI Y ++ L+ +AL HSS + ++ ERLEF+GD +L L + Sbjct: 1 MNTI-FDWLESKRIPYT--DKELIRQALVHSSYVNEHKTFAHDNERLEFMGDAVLQLWST 57 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 T LF EG+++ LV E ++ R+L L ++ + K SI A Sbjct: 58 TKLFKLTPELSEGQMTTLRAQLVCEEALAEYNRKLGLGRYLLLGVGEEKTGGRERDSILA 117 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+++ A+YLD G++ +++ + D KT+LQE+ + T Y Sbjct: 118 DMFEAVLGAIYLDSGMDSINVILEEVLTPAITQPKSEKVIDYKTKLQEYIQSDSRKTVHY 177 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + SGP + P F V V + + +G SK+ AEQ+AA + ++ Sbjct: 178 ETIHVSGPSNKPEFEVAVMLDDITLGRGKGFSKKRAEQMAAKDAFEKM 225 >gi|77416567|sp|Q7UGZ7|RNC_RHOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 266 Score = 134 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 3/221 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++ +GY F + LL ALTH+S + S ERLEFLGD +LGL + LFN + Sbjct: 33 KIERCQEILGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCEWLFNEYP 92 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ +++VS +C +VA +L L + V + S+ S+ +DV E++IA Sbjct: 93 EYSEGDLTKIKSAVVSRRSCGKVACKLGLDQCLIVGRGV-TRNRSYPKSLVSDVFEAVIA 151 Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALY+DGG E+ + + + + + K+ LQ++A + TP YK+ +G Sbjct: 152 ALYIDGGPEIVRDRLKLWLAEEVNLAVDTQGSGNHKSVLQQFAQRELSATPVYKLIRETG 211 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH F + + A +K+ AEQ AAA L Sbjct: 212 PDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAANALAEL 252 >gi|32473407|ref|NP_866401.1| ribonuclease III [Rhodopirellula baltica SH 1] gi|32398087|emb|CAD78182.1| ribonuclease III [Rhodopirellula baltica SH 1] Length = 297 Score = 134 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 3/221 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++ +GY F + LL ALTH+S + S ERLEFLGD +LGL + LFN + Sbjct: 64 KIERCQEILGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCEWLFNEYP 123 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ +++VS +C +VA +L L + V + S+ S+ +DV E++IA Sbjct: 124 EYSEGDLTKIKSAVVSRRSCGKVACKLGLDQCLIVGRGV-TRNRSYPKSLVSDVFEAVIA 182 Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ALY+DGG E+ + + + + + K+ LQ++A + TP YK+ +G Sbjct: 183 ALYIDGGPEIVRDRLKLWLAEEVNLAVDTQGSGNHKSVLQQFAQRELSATPVYKLIRETG 242 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH F + + A +K+ AEQ AAA L Sbjct: 243 PDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAANALAEL 283 >gi|119503988|ref|ZP_01626069.1| ribonuclease III [marine gamma proteobacterium HTCC2080] gi|119459991|gb|EAW41085.1| ribonuclease III [marine gamma proteobacterium HTCC2080] Length = 229 Score = 134 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 108/222 (48%), Gaps = 5/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +L+ R+GY+F + +L+ ALTH S + + ERLEFLGD + +I+ L+ F Sbjct: 9 QLLSLQNRLGYSFQDLQILKLALTHRSAG---RTNNERLEFLGDSFVNHVIAQRLYLQFP 65 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG+L+ + LV + + + L + + RK SI AD VE++ Sbjct: 66 KASEGQLTRLRSKLVRGTFLAALGEKYALGECLTLGVGERKSGGRHRASILADTVEAIAG 125 Query: 125 ALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+ LD G E A + ++ +D+KT LQEW A+ P Y + GP Sbjct: 126 AMLLDAGYENAAPVILHWFADALGELQVDGDKDSKTLLQEWLQARNLPLPSYDLVSVEGP 185 Query: 184 DHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 DH F VV I+G A G S+R AEQ AA+ + G Sbjct: 186 DHAQEFEVVCLINGQKNAFSGRGSSRRNAEQQAASVAIGELG 227 >gi|326794405|ref|YP_004312225.1| ribonuclease 3 [Marinomonas mediterranea MMB-1] gi|326545169|gb|ADZ90389.1| Ribonuclease 3 [Marinomonas mediterranea MMB-1] Length = 227 Score = 134 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 93/226 (41%), Positives = 126/226 (55%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS+L Y L +RIGY FA+ LLE ALTH S ++ ERLEFLGD IL +I+ LF Sbjct: 1 MSSL-YQKLCRRIGYFFADLGLLELALTHRSYG---GKNNERLEFLGDSILNYVIAEDLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F AKEGELS SLV +T +++ARE L F+++ + K SI AD VE Sbjct: 57 HRFPKAKEGELSRLRASLVKGDTLAELAREFQLGDFLKLGAGELKSGGFRRDSILADTVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+YLD G++ + +++K R + +DAKT LQE+ A+ P+Y+V Sbjct: 117 GIIGAMYLDAGMDTCKNQILEWYKTRLDATSLNVVTKDAKTRLQEYLQARKHGLPQYEVV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223 G HD F V I A +G S+R AEQ AAAE L + Sbjct: 177 NIDGEPHDQTFFVHCHIEIFDQAVEGKGNSRRIAEQNAAAEALSQL 222 >gi|300704607|ref|YP_003746210.1| ribonuclease III (RNAse III) [Ralstonia solanacearum CFBP2957] gi|299072271|emb|CBJ43604.1| Ribonuclease III (RNase III) [Ralstonia solanacearum CFBP2957] Length = 256 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 113/221 (51%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ + LL++ALTH S S ++ ERLEFLGD IL ++ +L+ F Sbjct: 1 MSLDALQQRLGYRFSKQELLQQALTHRSHSATH---NERLEFLGDSILNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L +R+ K SI AD +E++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H+ +F V I L G S+RAAEQ AA L+ Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218 >gi|241662605|ref|YP_002980965.1| ribonuclease III [Ralstonia pickettii 12D] gi|309781187|ref|ZP_07675924.1| ribonuclease III [Ralstonia sp. 5_7_47FAA] gi|240864632|gb|ACS62293.1| ribonuclease III [Ralstonia pickettii 12D] gi|308920008|gb|EFP65668.1| ribonuclease III [Ralstonia sp. 5_7_47FAA] Length = 256 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 109/221 (49%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S S ERLEFLGD IL ++ +L+ F Sbjct: 1 MSLDALQQRLGYRFSKPELLQQALTHRSHS---AMHNERLEFLGDSILNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L +R+ K SI AD +E++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + K + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPLYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H+ +F V I L G S+RAAEQ AA L+ Sbjct: 178 GAAHNQQFEVECSIPKLEIRVSGSGASRRAAEQSAAKLALE 218 >gi|332992353|gb|AEF02408.1| ribonuclease III [Alteromonas sp. SN2] Length = 229 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 116/227 (51%), Gaps = 7/227 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + Y L K +GY F N +LLE+ALTH S + + ERLEFLGD ILG++I L Sbjct: 1 MQGIDKYIRLSKALGYTFNNVALLEQALTHRSAAK---QHNERLEFLGDAILGMVIGETL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F EG+L+ ++LV +T +++ARE + + + K +SI AD V Sbjct: 58 FKRFPDVPEGKLTRMRSTLVKGDTLAELAREASMGELLHLGPGELKSGGHRRSSILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+++ A+YLD G+E + W+ R +D+KT LQE+ + P Y+V Sbjct: 118 EAVLGAIYLDSGMEEVCNVIYHLWESRIEALNPNAHPKDSKTRLQEYLQGRKLPLPSYEV 177 Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 SG DH F V ++ L P S+R AEQ AA L+ Sbjct: 178 ISISGKDHAQVFEVSCTVTTLDKPVSASGNSRRKAEQEAARLTLETL 224 >gi|40063418|gb|AAR38229.1| ribonuclease III [uncultured marine bacterium 580] Length = 231 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 111/222 (50%), Gaps = 6/222 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M LEK I Y F + LL A+TH S S + ERLEFLGD IL +++ LLF Sbjct: 1 METKELKILEKSIKYKFKDDKLLALAMTHRSHS---GMNNERLEFLGDSILNFVVADLLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F+ EG+LS + LV E S++ EL + F+ + K SI AD E Sbjct: 58 KKFNDLDEGDLSRLRSQLVKEEPLSKLGNELKIGDFLNLGVGELKSSGWRRPSILADAFE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+++DGG++ A F++ + + + +D KT LQE+ A+ P Y+V Sbjct: 118 ALIGAIFIDGGMKSAYKFIEDSYADLIEKINPKEIYKDPKTILQEFLQAQKVPLPSYEVI 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219 G H+ FTV +S +G S++ AEQ AA E Sbjct: 178 NVEGEAHNQLFTVTCVVSKFDVKVEGGGRSRKIAEQEAAKEA 219 >gi|255320780|ref|ZP_05361955.1| ribonuclease III [Acinetobacter radioresistens SK82] gi|262379444|ref|ZP_06072600.1| ribonuclease III [Acinetobacter radioresistens SH164] gi|255302157|gb|EET81399.1| ribonuclease III [Acinetobacter radioresistens SK82] gi|262298901|gb|EEY86814.1| ribonuclease III [Acinetobacter radioresistens SH164] Length = 230 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 110/219 (50%), Gaps = 5/219 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L RIGY F LL+ ALTH S+S ++ +YERLEFLGD +LG++I+ L++ + Sbjct: 12 RLPSRIGYQFKQPELLQLALTHRSVS--HKYNYERLEFLGDSLLGMIIANYLYHAYPFEN 69 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ +LV E ++A +L L+ + +S+ K SI AD VE++I A+Y Sbjct: 70 EGRLTRMRATLVRQEALGKIANDLKLSQCLILSTGELKSGGHHRESILADTVEAIIGAIY 129 Query: 128 LDG---GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +D I ++ +D K+ LQE+ A+ P Y+V G Sbjct: 130 IDCGELKILQDIVLKWYGPYLNNIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDA 189 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + F V + L G S+R AEQ AAAE+LK Sbjct: 190 PNQHFKVECSVDSLPKFIGEGSSRRFAEQAAAAEILKLL 228 >gi|15617978|ref|NP_224262.1| ribonuclease III [Chlamydophila pneumoniae CWL029] gi|15835590|ref|NP_300114.1| ribonuclease III [Chlamydophila pneumoniae J138] gi|16752990|ref|NP_445263.1| ribonuclease III [Chlamydophila pneumoniae AR39] gi|7531191|sp|Q9Z9C7|RNC_CHLPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|4376309|gb|AAD18207.1| Ribonuclease III [Chlamydophila pneumoniae CWL029] gi|7189635|gb|AAF38526.1| ribonuclease III [Chlamydophila pneumoniae AR39] gi|8978428|dbj|BAA98265.1| ribonuclease III [Chlamydophila pneumoniae J138] Length = 237 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 3/224 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60 + + +E ++ + F LLE ALTH S + E ERLEFLGD +LGL+++ LF Sbjct: 5 IDITAIEAKLNFTFTQPKLLEIALTHPSYKNESAVQIEDSERLEFLGDAVLGLIVTEHLF 64 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F S EG LS SLV+A+ C + L + ++ + + S A++ E Sbjct: 65 LLFPSMDEGTLSTARASLVNAKACCRYTTMLGIGDYLLIGKGEKIQSERGRLSAYANLFE 124 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 S++ A+YLDGG+ A R + K LQ++ +F V P Y+ T Sbjct: 125 SILGAVYLDGGLSPARKLTVPLLPPREEILPLMSGNPKNLLQQFTQKQFRVLPVYQSTAV 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + + + + V ++ +G SK+ AE++AA + L G Sbjct: 185 TDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQQALDTYG 228 >gi|197105333|ref|YP_002130710.1| ribonuclease III [Phenylobacterium zucineum HLK1] gi|238690159|sp|B4RCU4|RNC_PHEZH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|196478753|gb|ACG78281.1| ribonuclease III [Phenylobacterium zucineum HLK1] Length = 238 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 127/223 (56%), Gaps = 4/223 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + LE+RIGY F +R LLE+ALTH+S+ + ERLEFLGDR+L L + L Sbjct: 8 VAELERRIGYVFTDRDLLERALTHASVGDGARAVRHNERLEFLGDRVLNLCAAERLMALD 67 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A+EGE+S SLV+ C++ A+ L +R+S+ K ++ D E+LI Sbjct: 68 PDAREGEMSRLLASLVNYHACARAAKRAGLQEALRLSASATKVGARKSDAVLGDACEALI 127 Query: 124 AALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AALY+DGG+E A F+ + ++ A +D KT+LQEW P Y++ + G Sbjct: 128 AALYIDGGLETARAFFLKFWDEEFARLDEPRAKDPKTQLQEWVQGMGLPLPTYEIVSQEG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV-LKREG 224 P H P FTV V+++G +G S++AAE+ AA + LKREG Sbjct: 188 PPHAPSFTVEVQVAGFGAERGEGRSRQAAEKAAAQCMLLKREG 230 >gi|284032688|ref|YP_003382619.1| ribonuclease III [Kribbella flavida DSM 17836] gi|283811981|gb|ADB33820.1| ribonuclease III [Kribbella flavida DSM 17836] Length = 249 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 14/236 (5%) Query: 1 MSALR----------YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGD 48 M+++ Y+ L +R+G + A+ LLE A TH S ++ + ERLEFLGD Sbjct: 1 MNSVNPEPASGHGGLYAELNQRLGVSLAD-ELLEHAFTHRSFAYENGGLPTNERLEFLGD 59 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 +LG++++ LF + EG L+ ++V+ + VAR+L L ++R+ Sbjct: 60 SVLGVIVTESLFRNHPDLSEGRLAKLRAAVVNMRALAGVARDLKLGKYLRLGRGEEATGG 119 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHA 167 +SI AD VE+LI A+YLD G EVAG V + S + + A Sbjct: 120 RDKSSILADCVEALIGAVYLDRGFEVAGRVVHTLFDDLMESSARLGAGLDWKTSLQELVA 179 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GV V SGPDH F V I G+ SK+ AEQ AA K Sbjct: 180 QLGVGVPEYVIAESGPDHAKTFEARVRIGSDTYGHGIGRSKKEAEQQAAETAWKAL 235 >gi|330836489|ref|YP_004411130.1| RNAse III [Spirochaeta coccoides DSM 17374] gi|329748392|gb|AEC01748.1| RNAse III [Spirochaeta coccoides DSM 17374] Length = 256 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 108/220 (49%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 +K G F + LL A TH S + + ++ ERLEFLGD +LG ++S LF + + Sbjct: 28 FQKNAGIKFHSLELLNLAFTHRSFFNESRHEVDNNERLEFLGDSVLGFMVSEWLFLNLPA 87 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+ S + +V+ ++ +++A L + F+ + + +I AD +E++ AA Sbjct: 88 RHEGDFSKIRSYVVNEDSLAEIALSLHVDRFLIIGKGEEMNGGRTKKTILADCMEAIFAA 147 Query: 126 LYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 YLD G++ + ++ + + ++D KT LQE ++ P Y++ SGP Sbjct: 148 YYLDAGLKPVQELILRHLVPAIMVVLDDRHKKDYKTLLQEIIQKRYHKYPVYELLRTSGP 207 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +HD F V V + G +K+ AEQ AA + Sbjct: 208 EHDRTFWVQVNVVGNIFGPASGANKKEAEQNAACAAYEAL 247 >gi|222444593|ref|ZP_03607108.1| hypothetical protein METSMIALI_00205 [Methanobrevibacter smithii DSM 2375] gi|261350869|ref|ZP_05976286.1| ribonuclease III [Methanobrevibacter smithii DSM 2374] gi|222434158|gb|EEE41323.1| hypothetical protein METSMIALI_00205 [Methanobrevibacter smithii DSM 2375] gi|288860206|gb|EFC92504.1| ribonuclease III [Methanobrevibacter smithii DSM 2374] Length = 223 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 3/220 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L ++ +R L + A TH S H +YERLEFLGD +L +++S L+ + Sbjct: 2 NLLEKFNIVPKDRHLYDVAFTHGSYGTKHGLDYTYERLEFLGDSVLNMIVSEYLYKQYPD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG+L+ + V + EL L I++ D K + + SI ADV ES + A Sbjct: 62 YEEGKLTKLRANYVCQTALIYYSHELGLDKHIKIYGDDSKITENEVLSITADVFESFLGA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 ++LD GIE A ++ K F D K+ ++E+ A+ G H Sbjct: 122 IFLDQGIEFAKDYISKIIFPYIDAKKVFFFDYKSVIKEYGDAQEVDIEYKI-IDECGVPH 180 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + F + + I G G +K+ AEQ A+ + +K+ I Sbjct: 181 NKTFIISILIDGKEMGVGKGKNKKEAEQAASKQAMKKLKI 220 >gi|293609826|ref|ZP_06692128.1| ribonuclease 3 [Acinetobacter sp. SH024] gi|292828278|gb|EFF86641.1| ribonuclease 3 [Acinetobacter sp. SH024] Length = 230 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 114/230 (49%), Gaps = 9/230 (3%) Query: 1 MSALRYS----TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56 M ++ L RIGY F LL+ ALTH S+S ++ +YERLEFLGD +LG++I+ Sbjct: 1 MIKHQFKLSDPRLLSRIGYQFKQLELLQLALTHRSVS--HKYNYERLEFLGDSLLGMIIA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L++ + + EG L+ +LV E ++A +L L+ + +S+ K SI A Sbjct: 59 NYLYHAYPNENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILA 118 Query: 117 DVVESLIAALYLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 D VE++I A+YLD G ++ +D K+ LQE+ A+ P Sbjct: 119 DTVEAIIGAIYLDSGDLNLLKDIVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARKKPLP 178 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V G F V + GL G S+R AEQ AAAE+LK Sbjct: 179 VYEVVDIQGDAPHQHFKVECVVDGLPKIYGEGSSRRFAEQAAAAEILKLL 228 >gi|257866576|ref|ZP_05646229.1| ribonuclease III [Enterococcus casseliflavus EC30] gi|257872908|ref|ZP_05652561.1| ribonuclease III [Enterococcus casseliflavus EC10] gi|257876180|ref|ZP_05655833.1| ribonuclease III [Enterococcus casseliflavus EC20] gi|325567330|ref|ZP_08143997.1| ribonuclease III [Enterococcus casseliflavus ATCC 12755] gi|257800534|gb|EEV29562.1| ribonuclease III [Enterococcus casseliflavus EC30] gi|257807072|gb|EEV35894.1| ribonuclease III [Enterococcus casseliflavus EC10] gi|257810346|gb|EEV39166.1| ribonuclease III [Enterococcus casseliflavus EC20] gi|325158763|gb|EGC70909.1| ribonuclease III [Enterococcus casseliflavus ATCC 12755] Length = 230 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 5/218 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M+ L+++ F + LLE+A THSS + ++ ERLEFLGD +L L++S Sbjct: 1 MNTQLTKELKEKFDIVFHDVDLLEQAFTHSSYVNEHRNLHLSDNERLEFLGDAVLELIVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ EG+L+ ++V ++ S A++ +IR+ S+ Sbjct: 61 RYLYRELPDLPEGKLTKLRAAIVREDSLSMFAKDCRFDEYIRLGKGEENSGGRKRPSLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD G+E F+ K + D KT LQE V+ Y Sbjct: 121 DLFEAFLGALYLDQGLESVSGFLTKVVFPKVKAGAFSHEMDHKTRLQEVLQRGGDVSINY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ +GP H+ F V +G SK+ +EQ Sbjct: 181 RLIKEAGPAHERIFWTEVYCDDTLIGKGQGKSKKLSEQ 218 >gi|254448879|ref|ZP_05062335.1| ribonuclease III [gamma proteobacterium HTCC5015] gi|198261569|gb|EDY85858.1| ribonuclease III [gamma proteobacterium HTCC5015] Length = 225 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 113/221 (51%), Gaps = 6/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 STL+ + Y F+N LLE A+TH S S + + ERLEFLGD IL ++ LF F Sbjct: 2 LSTLQSTLNYTFSNGDLLEVAVTHRSASKT---NNERLEFLGDSILNFTVAAELFERFPE 58 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS SLV + + A+++DL F+++ K SI AD VE++I A Sbjct: 59 RPEGDLSRLRASLVDKSSLAAHAKKMDLGPFLKLGGGELKSGGWRRDSILADAVEAIIGA 118 Query: 126 LYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGGIE A F+ + + +DAKT LQEW + P+Y++ SG Sbjct: 119 IYLDGGIESAQQFIRDLYDGDFESLPTANELKDAKTRLQEWLQGRHYALPQYEMVEVSGK 178 Query: 184 DHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 H+ +FTV I S+R AEQ AA L + Sbjct: 179 PHEQQFTVSCYIDSHDVQVNATGRSRRKAEQAAAETALAQL 219 >gi|262368562|ref|ZP_06061891.1| dsRNA-specific ribonuclease [Acinetobacter johnsonii SH046] gi|262316240|gb|EEY97278.1| dsRNA-specific ribonuclease [Acinetobacter johnsonii SH046] Length = 230 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 74/220 (33%), Positives = 112/220 (50%), Gaps = 5/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L RIGY F LL+ ALTH S+S ++ +YERLEFLGD +LG++I+ L+ + + Sbjct: 11 ARLASRIGYQFKQPELLQLALTHRSVS--HKYNYERLEFLGDSLLGMIIANYLYKAYPTE 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ +LV E ++A +L L+ + +S+ K SI AD VES+I A+ Sbjct: 69 NEGRLTRMRATLVRQEALGKIANDLKLSQSLILSTGELKSGGHHRESILADTVESIIGAI 128 Query: 127 YLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 Y+D ++ +D K+ LQE+ A+ P Y V G Sbjct: 129 YVDCSDLTVLEPIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKALPVYDVVDIQGD 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + F V ++ GL+ G S+R AEQ AAA++LK Sbjct: 189 APNQHFKVECKVDGLSVVNGEGTSRRFAEQAAAADILKLL 228 >gi|119383173|ref|YP_914229.1| ribonuclease III [Paracoccus denitrificans PD1222] gi|119372940|gb|ABL68533.1| RNAse III [Paracoccus denitrificans PD1222] Length = 241 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 124/225 (55%), Gaps = 2/225 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + +R+G+ F+ LL +ALTH SI+ + + +RLEFLGDR+LGL I+ L Sbjct: 13 MKISADLRAFSERLGHEFSRPELLRRALTHGSIASTTRPDNQRLEFLGDRVLGLTIAEAL 72 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F+ +A EG+L+ R+N+LV ETC+ +ARE+ L +++ ++ AD + Sbjct: 73 FSADRAATEGQLAPRYNALVKGETCAAIAREIGLGEVLKLGRSEMMSGGRRKEALLADAM 132 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+YLD G E A V W R RDAKT LQEWA A+ P Y Sbjct: 133 EAVIAAVYLDAGFETARGVVLGLWSDRLANVETDARDAKTALQEWAQAQGMSPPRYVQIA 192 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKRE 223 R+GPDH P F + V + A +KR+ EQ AA +L++ Sbjct: 193 RTGPDHAPEFQITVRLDDGREASASGKGTKRSIEQAAATAMLEQI 237 >gi|269302927|gb|ACZ33027.1| ribonuclease III [Chlamydophila pneumoniae LPCoLN] Length = 237 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 3/224 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60 + + +E ++ + F LLE ALTH S + E ERLEFLGD +LGL+++ LF Sbjct: 5 IDITAIEAKLNFTFTQPKLLEIALTHPSYKNESAVQIEDSERLEFLGDAVLGLIVTEHLF 64 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F S EG LS SLV+A+ C + L + ++ + + S A++ E Sbjct: 65 LLFPSMDEGTLSTARASLVNAKACCRYTTTLGIGDYLLIGKGEKIQSERGRLSAYANLFE 124 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 S++ A+YLDGG+ A R + K LQ++ +F V P Y+ T Sbjct: 125 SILGAVYLDGGLSPARKLTVPLLPPREEILPLMSGNPKNLLQQFTQKQFRVLPVYQSTAV 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + + + + V ++ +G SK+ AE++AA + L G Sbjct: 185 TDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQQALDTYG 228 >gi|226313209|ref|YP_002773103.1| ribonuclease III [Brevibacillus brevis NBRC 100599] gi|226096157|dbj|BAH44599.1| ribonuclease III [Brevibacillus brevis NBRC 100599] Length = 246 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 60/211 (28%), Positives = 101/211 (47%), Gaps = 5/211 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 + ++ L++ IG+ F + S+L +A THSS + + ERLEFLGD +L L +S L Sbjct: 19 MNFAQLQETIGFRFRDESVLRQAFTHSSYVNEQRGKRISDNERLEFLGDAVLELTVSQFL 78 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F EGE++ ++V + + A L+ + + ++ ADV Sbjct: 79 YKTFPKMSEGEMTKLRAAIVCEPSLVKFAELLNFGDLVLLGKGEELTGGRQRPALLADVF 138 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+ + ALYLD G+E +F++KY R K D K++LQE+ Y++ Sbjct: 139 EAFVGALYLDQGLEAVFSFMEKYVYPRIDKGEFAQVTDFKSQLQEFVQQDNLGDIHYRIV 198 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ + G SK+ Sbjct: 199 EEKGPAHNREFVSEVLLNNRSLGIGSGRSKK 229 >gi|154148336|ref|YP_001407136.1| ribonuclease III [Campylobacter hominis ATCC BAA-381] gi|153804345|gb|ABS51352.1| ribonuclease III [Campylobacter hominis ATCC BAA-381] Length = 223 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 111/207 (53%), Gaps = 3/207 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +EK +GY F N + L+ ALTH S ++ ERLEFLGD ++ L+++ L+ F + Sbjct: 3 EIEKILGYKFKNENHLKLALTHKSF--KGAQNNERLEFLGDAVMDLIVAEYLYEKFRHTQ 60 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS +LV+ ++ ++ AR+L + + +S + SI +D E++ A+Y Sbjct: 61 EGDLSKLRAALVNEKSFAKFARKLKIGENLFLSLGEEHNGGRKKDSILSDAFEAIFGAIY 120 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 L+ G+EV + K ++ + K +D KTELQE A F +TP YK+ +GPDH Sbjct: 121 LESGLEVCKSLSIKILEEIFPQIDKSLYKDFKTELQEITQANFALTPTYKLLSATGPDHK 180 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQ 213 F + V A SK+ AEQ Sbjct: 181 KEFEMAVFFDDKKIAAAKGKSKKEAEQ 207 >gi|167035367|ref|YP_001670598.1| ribonuclease III [Pseudomonas putida GB-1] gi|189043333|sp|B0KV27|RNC_PSEPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|166861855|gb|ABZ00263.1| Ribonuclease III [Pseudomonas putida GB-1] Length = 229 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 113/225 (50%), Gaps = 10/225 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + LE+++GY F N+ + ALTH S + + ERLEFLGD IL + LF F Sbjct: 5 LARLERKLGYTFKNQDQMLLALTHRSYA---GRNNERLEFLGDAILNFVAGEALFERFPQ 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EG+LS LV ET +++AR DL ++R+ S K SI AD +E+LI A Sbjct: 62 AREGQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD ++ A V + +D KT LQE+ ++ P Y+V G Sbjct: 122 IYLDADMDTARERVLAWLADEFEGLTLVDTNKDPKTRLQEFLQSRSCELPRYEVVDIQGE 181 Query: 184 DHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 H F V E+ + ++G S+R AEQVAAA L G+ Sbjct: 182 PHCRTFFVECEVVLLNNK--SRGQGVSRRIAEQVAAASALIALGV 224 >gi|156740401|ref|YP_001430530.1| ribonuclease III [Roseiflexus castenholzii DSM 13941] gi|254807896|sp|A7NGC5|RNC_ROSCS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|156231729|gb|ABU56512.1| Ribonuclease III [Roseiflexus castenholzii DSM 13941] Length = 234 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 9/232 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLL 54 M L R+ F+++ LL +ALTH S + + S ERLEFLGD I+ L Sbjct: 1 MKK-PLDELCARLDVTFSDQRLLWQALTHRSFLNERVDERLSLFSNERLEFLGDAIVNFL 59 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 +TL+F F A EG L+ +L+ ET + AR DL S ++ S+ Sbjct: 60 ATTLVFERFPDAGEGYLTAWRAALIRTETLASFARRYDLGSHTLLARGEESSGARQRPSL 119 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVT 172 AD E+++AA+++D G++ F+ +++ + D K++LQ A+ G+T Sbjct: 120 LADTFEAVVAAIFIDQGLDAVRKFLLPLFEETLATLQEQGLPVDYKSKLQARIQAERGIT 179 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P Y++ RSGP+H P FT + G SK+AAEQ AA + L R G Sbjct: 180 PRYRMIERSGPEHQPEFTFEALAGDESLGTGRGASKQAAEQDAARDALDRLG 231 >gi|33241390|ref|NP_876331.1| ribonuclease III [Chlamydophila pneumoniae TW-183] gi|33235898|gb|AAP97988.1| ribonuclease III [Chlamydophila pneumoniae TW-183] Length = 237 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 3/224 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60 + + +E ++ + F LLE ALTH S + E ERLEFLGD +LGL+++ LF Sbjct: 5 IDITAIEAKLNFTFTQPKLLEIALTHPSYKNESAVQIEDSERLEFLGDAVLGLIVTEHLF 64 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F S EG LS SLV+A+ C + L + ++ + + S A++ E Sbjct: 65 LLFPSMDEGTLSTARASLVNAKACCRYTTVLGIGDYLLIGKGEKIQSERGRLSAYANLFE 124 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 S++ A+YLDGG+ A R + K LQ++ +F V P Y+ T Sbjct: 125 SILGAVYLDGGLSPARKLTVPLLPPREEILPLMSGNPKNLLQQFTQKQFRVLPVYQSTAV 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + + + + V ++ +G SK+ AE++AA + L G Sbjct: 185 TDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQQALDTYG 228 >gi|150402698|ref|YP_001329992.1| ribonuclease III [Methanococcus maripaludis C7] gi|150033728|gb|ABR65841.1| Ribonuclease III [Methanococcus maripaludis C7] Length = 229 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 60/227 (26%), Positives = 94/227 (41%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L ++ F + + ++A HSS + + E ERLE+LGD +L L+IS Sbjct: 1 MK--NFEKLLSKLDIKFNDLDIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLELIIS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF EGE+S V A++L ++ + +I + Sbjct: 59 EYLFKKESL-SEGEMSKLRAKYVCESALFTYAKKLKFNDYVLLGKGELNSKGYNKPAIIS 117 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 DV E+ IAA+YLD G++ A FV+ + ++ K + T EY Sbjct: 118 DVFEAFIAAIYLDQGLDSAKKFVNNHIIPIIEENSKELFIDYKTRLQEFPELNNKTIEYI 177 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G HD +F V V+ +G SK+ AE AA L + Sbjct: 178 NLEEVGEPHDKKFIVAVKSGRKMLGKGTGKSKKEAEMKAAKNALLKL 224 >gi|254418789|ref|ZP_05032513.1| ribonuclease III [Brevundimonas sp. BAL3] gi|196184966|gb|EDX79942.1| ribonuclease III [Brevundimonas sp. BAL3] Length = 236 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 89/236 (37%), Positives = 135/236 (57%), Gaps = 10/236 (4%) Query: 1 MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHS------YQESYERLEFLGDRIL 51 M+ LR + L+ RIG+AF + +LLE+ALTH+S+ ERLEFLGDR+L Sbjct: 1 MANLRAEAVAALQTRIGHAFRDAALLERALTHASVGEGAPVGVHGPRDNERLEFLGDRVL 60 Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 GLL++ L + +A EG+LS ++LV C++V L + + +R+S K Sbjct: 61 GLLVAEKLSRDYPTANEGQLSSSLHALVDKTACARVGEALGVGAALRLSPGETKTGGRRK 120 Query: 112 TSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 + AD VE+++AA+YLDGG+E A F + ++ + + + K+ LQEWA AK Sbjct: 121 AGVIADAVEAILAAVYLDGGLEAARAFFDKAWAEEFSAPPSRTVTNPKSALQEWAQAKGR 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P Y+V R+G DH P FT+ V + G+ P S++ AE+ AA +LKREG+ Sbjct: 181 PLPTYRVADRTGSDHAPTFTIEVSVEGVEPLTAQGRSRQEAEKAAATALLKREGVI 236 >gi|33519987|ref|NP_878819.1| ribonuclease III [Candidatus Blochmannia floridanus] gi|81666891|sp|Q7VRR0|RNC_BLOFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|33504333|emb|CAD83226.1| ribonuclease III [Candidatus Blochmannia floridanus] Length = 232 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + + L+K++GY F LL +ALTH S S+ + ERLEFLGD IL I+ +L++ + Sbjct: 7 IEINLLQKKLGYFFHTVDLLLRALTHRSFSN---KHNERLEFLGDSILNYSITNILYHRY 63 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG++S +SLV + T ++A+E L + +++ K+ SI AD VE++I Sbjct: 64 NHMDEGDMSRIRSSLVCSRTLVELAKEFKLGNCLKLGQGELKNKGYNRESILADTVEAII 123 Query: 124 AALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 ++LD I+ ++ + ++D KT LQE+ P Y + Sbjct: 124 GGIFLDSNIKTIEMLIAFWYQFRLNKIDLEDKQKDPKTRLQEYLQHHHLPLPIYCINQVQ 183 Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221 G HD F + ++S L + G S+R AEQ AA LK Sbjct: 184 GQAHDQIFIMNCQVSSLKYSVMGRGSSRRKAEQDAAENALK 224 >gi|293376124|ref|ZP_06622372.1| ribonuclease III [Turicibacter sanguinis PC909] gi|325841637|ref|ZP_08167414.1| ribonuclease III [Turicibacter sp. HGF1] gi|292645251|gb|EFF63313.1| ribonuclease III [Turicibacter sanguinis PC909] gi|325489915|gb|EGC92263.1| ribonuclease III [Turicibacter sp. HGF1] Length = 236 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 + + K AF +A THSS + ++ E ERLE+LGD +L L +S LF Sbjct: 6 QLAEFLKENKIAFRQLDRYCQAFTHSSYVNEHRHLKIEDNERLEYLGDAVLELTVSNYLF 65 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N S EGE++ LV + AR L+L + + ++ AD E Sbjct: 66 NLKPSLSEGEMTKIRAQLVCEPSLESYARNLNLGKLMLLGRGEENSGGRERPTVLADAFE 125 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + A+YLD G++ +FV + + + D K+ LQE A EY++ Sbjct: 126 AFVGAMYLDLGMDTVYSFVHEIIHKAYQQGEVTQVFDYKSTLQELVQADSKKAIEYRIIS 185 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP H+ F +V + G+ +G+ +K+ AEQ AA ++ Sbjct: 186 ETGPAHNRSFEAIVLLDGITLGRGIGKTKKEAEQQAAKGAIEIL 229 >gi|150399590|ref|YP_001323357.1| ribonuclease III [Methanococcus vannielii SB] gi|150012293|gb|ABR54745.1| Ribonuclease III [Methanococcus vannielii SB] Length = 227 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L + F N ++ ++A HSS + + E ERLE+LGD +L L++S Sbjct: 1 MD--NFEKLLLELDIKFNNLNIFKQAFIHSSYVNEHDNENLEDNERLEYLGDAVLELVVS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF EGE+S + V + A++L+ +I + +I + Sbjct: 59 EYLF-ENKLLNEGEMSKLRSKYVCEYSLFLYAKKLNFGDYILLGKGEINSNGFNRPTILS 117 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 DV E+ IAA+YLD G+ F +K+ ++ K + T Y Sbjct: 118 DVFEAFIAAIYLDLGLCSVKKFFNKFIVPIIEENSKKLFIDYKTKLQEMIQSENKTVRYI 177 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + G HD F V V+I ++G+ SK+ AE+ AA L + Sbjct: 178 LLEELGEPHDKEFIVAVKIGRKIISKGVGKSKKDAERQAAKIALLKL 224 >gi|312622598|ref|YP_004024211.1| ribonuclease iii [Caldicellulosiruptor kronotskyensis 2002] gi|312203065|gb|ADQ46392.1| ribonuclease III [Caldicellulosiruptor kronotskyensis 2002] Length = 222 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 65/218 (29%), Positives = 105/218 (48%), Gaps = 1/218 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +EK +GY F +++LL ALTH S +HS + YERLEFLGD L L +S LF HF Sbjct: 2 EEIEKALGYKFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPEL 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V ++T S++A +L+L + I + + SI ADVVE++ A+ Sbjct: 62 SEGELTNIRAAVVCSQTLSKIAEKLNLKNHIIFGKREKMEKFHENKSILADVVEAIFGAI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +++ G E + K K+ + + + + + + Sbjct: 122 FIESGFEKLEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEFVQKEGQKKIVYKDYEIIE-K 180 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + I G ++G SK+ A+Q AA + L G Sbjct: 181 KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218 >gi|299067031|emb|CBJ38226.1| Ribonuclease III (RNase III) [Ralstonia solanacearum CMR15] Length = 256 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 108/221 (48%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+ Y F+ LL++ALTH S ERLEFLGD IL ++ +L+ F Sbjct: 1 MSLEALQQRLDYRFSKPELLQQALTHRS---HNAMHNERLEFLGDSILNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L +R+ K SI AD +E++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLLLPDELRLGEGELKSGGFRRPSILADALEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H+ +F V I L G S+RAAEQ AA L+ Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218 >gi|167623017|ref|YP_001673311.1| ribonuclease III [Shewanella halifaxensis HAW-EB4] gi|189043349|sp|B0TIV7|RNC_SHEHH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|167353039|gb|ABZ75652.1| Ribonuclease III [Shewanella halifaxensis HAW-EB4] Length = 225 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + L + +GY F ++ L++ALTH S S+ + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNIPRLCRTLGYEFTEQAFLDQALTHRSASN---KHNERLEFLGDSILSIVISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F +A EG+LS +LV + +++A E L ++++ K SI AD V Sbjct: 58 YHQFPTATEGDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELKSGGFRRESILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLD IE + V K+++ R + ++D KT LQE P YKV Sbjct: 118 EAIIGAIYLDSEIEKCRSLVLKWYESRLKVIEPINQKDPKTLLQEHLQKFRKPLPVYKVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 G H+ FTV + L+ A G+ S+R AEQ AAA+VL+ Sbjct: 178 HTEGDAHEQTFTVECIVEDLSQAVVGVASSRRKAEQSAAAQVLELMK 224 >gi|308068621|ref|YP_003870226.1| ribonuclease III [Paenibacillus polymyxa E681] gi|310641509|ref|YP_003946267.1| ribonuclease iii [Paenibacillus polymyxa SC2] gi|305857900|gb|ADM69688.1| Ribonuclease III (RNase III) [Paenibacillus polymyxa E681] gi|309246459|gb|ADO56026.1| Ribonuclease III [Paenibacillus polymyxa SC2] Length = 232 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 5/210 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLF 60 L++++ F NR LL++A TH+S + ++ S ERLEFLGD +L L +S L+ Sbjct: 4 DLKQLQQKLHIQFNNRQLLKQAFTHASYVNEHRFSQHADNERLEFLGDAVLELTVSEQLY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + + EGEL+ ++V + + A L+ ++ + ++ ADV E Sbjct: 64 NQYPNRPEGELTKLRAAIVCEPSLVKFAVGLEFGQYVLLGKGEELTGGRTRPALLADVFE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + ALYLD G+E +F+++Y + + +GK D KTELQE EYK+ Sbjct: 124 AFVGALYLDQGLEAVRSFLERYIFPQIVLNGKLQMSDFKTELQELTQHHNMGMLEYKIVE 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V + G SK+ Sbjct: 184 ERGPAHEREFVAEVYMDSERLGAGTGRSKK 213 >gi|148544383|ref|YP_001271753.1| ribonuclease III [Lactobacillus reuteri DSM 20016] gi|184153747|ref|YP_001842088.1| ribonuclease III [Lactobacillus reuteri JCM 1112] gi|194466493|ref|ZP_03072480.1| Ribonuclease III [Lactobacillus reuteri 100-23] gi|227363192|ref|ZP_03847326.1| ribonuclease III [Lactobacillus reuteri MM2-3] gi|325682703|ref|ZP_08162219.1| ribonuclease III [Lactobacillus reuteri MM4-1A] gi|189043324|sp|A5VKP2|RNC_LACRD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|229564353|sp|B2G826|RNC_LACRJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|148531417|gb|ABQ83416.1| RNAse III [Lactobacillus reuteri DSM 20016] gi|183225091|dbj|BAG25608.1| ribonuclease III [Lactobacillus reuteri JCM 1112] gi|194453529|gb|EDX42426.1| Ribonuclease III [Lactobacillus reuteri 100-23] gi|227071798|gb|EEI10087.1| ribonuclease III [Lactobacillus reuteri MM2-3] gi|324977053|gb|EGC14004.1| ribonuclease III [Lactobacillus reuteri MM4-1A] Length = 233 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 9/227 (3%) Query: 6 YSTLE----KRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIST 57 L+ K F N +LL +A T +S + + YER+EFLGD +L L++S Sbjct: 2 IEELQDYLAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVSE 61 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 ++ F +G+L+ ++V ++ S+ A+E +IR+ + D Sbjct: 62 YIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARERPGLLCD 121 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + ES I ALYLD G FV + + + DAKT LQE+ + EY Sbjct: 122 IFESFIGALYLDQGRPAVEKFVQRVIFPKLDMGWFDHAVDAKTSLQEFLQRDGDIAIEYH 181 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + SG ++DP F V V +G +G SK+ AE AA + L Sbjct: 182 LVEESGTENDPEFKVNVTANGDVIGEGKGSSKKHAEMQAAQQALDNM 228 >gi|119489560|ref|ZP_01622320.1| Ribonuclease III [Lyngbya sp. PCC 8106] gi|119454472|gb|EAW35620.1| Ribonuclease III [Lyngbya sp. PCC 8106] Length = 395 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 13/235 (5%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTL 58 R L + I F + LL++ALTH + + + E+LEFLGD +L L Sbjct: 163 RERLKELLETI--PFQDARLLQRALTHRTYVFEHPTKTEGDNEQLEFLGDSVLNFLAGDY 220 Query: 59 LFNHF-DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ + EGEL+ R +S V +Q A +L+L ++++ +S+ ++ Sbjct: 221 LYEQYSHRRDEGELTRRRSSFVDNSQFAQFAVKLNLGEWMQLGKGEELQGGRTKSSLLSN 280 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT------ELQEWAHAKFGV 171 E+++ A YLD GIE + +++ + + +T LQ A Sbjct: 281 TFEAVMGAYYLDSGIEAVRELIKPFFESVDTATVEDSIPQQTLIDVKGRLQNLAQTNDLP 340 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 PEY V G DH FTV V I+ +G K+ AE+ AA + L+ G+ Sbjct: 341 IPEYYVVSEMGKDHAKIFTVEVRINRKFYGRGTGNKKKEAEKQAAIDALQCLGLL 395 >gi|296127821|ref|YP_003635073.1| ribonuclease III [Brachyspira murdochii DSM 12563] gi|296019637|gb|ADG72874.1| ribonuclease III [Brachyspira murdochii DSM 12563] Length = 246 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 119/232 (51%), Gaps = 9/232 (3%) Query: 1 MSALRYSTL----EKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGL 53 M+ + + ++ I Y F N+S L +A+TH + ++ ++ +RLEFLGD +L L Sbjct: 1 MNIINIEEILNNCQEVIKYEFRNKSYLLEAITHRTYANESKKKMKYNQRLEFLGDSVLSL 60 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +IS LF ++++KEG LS +SLVS ++ + +++EL L FI + + + Sbjct: 61 IISDYLFKKYNTSKEGLLSKVKSSLVSQKSLADISKELKLGDFILLGHGEEVSGGRYRDN 120 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGV 171 + D+ E+++ A+YLD GI A FV K +K R F +D KT QE K Sbjct: 121 MLEDLFEAIVGAIYLDSGINNAAQFVMKAYKNRLNNLDIENFDKDYKTIFQELIQKKHKT 180 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +P YK ++ F V ++ + G+ SK+ AE AA + L+ Sbjct: 181 SPVYKSYEYHDENNHEMFKSEVYVNDKNFSSGIGKSKKEAETEAAKKALENI 232 >gi|117928781|ref|YP_873332.1| ribonuclease III [Acidothermus cellulolyticus 11B] gi|117649244|gb|ABK53346.1| RNAse III [Acidothermus cellulolyticus 11B] Length = 246 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 107/221 (48%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 L++ G + +LLE+A+TH S ++ + ERLEFLGD +LGL+I+ L+ F Sbjct: 16 LEELQQIAGLPLS-LALLERAVTHRSYAYENGGLPTNERLEFLGDAVLGLVITDTLYRRF 74 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++V+ ++VAR L L F+R+ +SI AD +E+LI Sbjct: 75 PELPEGQLAKFRSAVVNMRALAEVARSLRLGEFLRLGRGEESTGGRNKSSILADALEALI 134 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSG 182 A+Y++ G++ A FV + + ++ + A + + G Sbjct: 135 GAVYVEHGLDGAAEFVHRLFDPLIDRAAALGAGLDWKTSLQELTAAQHLGVPFYDLSERG 194 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH+ FT V I G G SK+ AEQ AA E R Sbjct: 195 PDHEKVFTAEVRIGGRVYGTGSGHSKKEAEQRAAQEAWLRI 235 >gi|291546254|emb|CBL19362.1| RNAse III [Ruminococcus sp. SR1/5] Length = 226 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 79/213 (37%), Positives = 109/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M LE+ IGY F +SLLE+A+THSS ++ ERLEFLGD +L L+ S Sbjct: 1 MEN-NLKKLEQTIGYQFTAKSLLEQAMTHSSYANEKHLGKLGCNERLEFLGDAVLELISS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ F + +EGEL+ + S+V ++ + ARE L FI + SI + Sbjct: 60 DFLYKKFRNNQEGELTKKRASMVCEKSLAYCAREFGLPEFILLGRGEEMMGGRKRDSIVS 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +ESLI A+YLDGG E A FV K+ F D+KT LQE EY+ Sbjct: 120 DGLESLIGAMYLDGGFEPAQAFVMKFILNDLEDKRIFY-DSKTVLQEMVQEGGNHPVEYR 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + GPDH FTV I+G + G+ +K+ Sbjct: 179 LLKEEGPDHSKSFTVEALINGKSMGTGIGHTKK 211 >gi|227544367|ref|ZP_03974416.1| ribonuclease III [Lactobacillus reuteri CF48-3A] gi|300909772|ref|ZP_07127233.1| ribonuclease III [Lactobacillus reuteri SD2112] gi|227185630|gb|EEI65701.1| ribonuclease III [Lactobacillus reuteri CF48-3A] gi|300893637|gb|EFK86996.1| ribonuclease III [Lactobacillus reuteri SD2112] Length = 233 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56 M L K F N +LL +A T +S + + YER+EFLGD +L L++S Sbjct: 1 MIKELQDYLAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ F +G+L+ ++V ++ S+ A+E +IR+ + Sbjct: 61 EYIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARERPGLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ ES I ALYLD G FV + + + DAKT LQE+ + EY Sbjct: 121 DIFESFIGALYLDQGRPAVEKFVQRVIFPKLDMGWFDHAVDAKTSLQEFLQRDGDIAIEY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + SG ++DP F V V +G +G SK+ AE AA + L Sbjct: 181 HLVEESGTENDPEFKVNVTANGDVIGEGKGSSKKHAEMQAAQQALDNM 228 >gi|26988166|ref|NP_743591.1| ribonuclease III [Pseudomonas putida KT2440] gi|148549494|ref|YP_001269596.1| ribonuclease III [Pseudomonas putida F1] gi|37999409|sp|Q88MY5|RNC_PSEPK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043332|sp|A5W8F2|RNC_PSEP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|24982900|gb|AAN67055.1|AE016334_4 ribonuclease III [Pseudomonas putida KT2440] gi|148513552|gb|ABQ80412.1| RNAse III [Pseudomonas putida F1] gi|313500339|gb|ADR61705.1| Rnc [Pseudomonas putida BIRD-1] Length = 229 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 114/229 (49%), Gaps = 10/229 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + + LE+++GY F N+ + ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSASLAGLERKLGYTFKNQDQMLLALTHRSYA---GRNNERLEFLGDAILNFVAGEALFE 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS LV ET +++AR DL ++R+ S K SI AD +E+ Sbjct: 58 RFPQAREGQLSRLRARLVKGETLARLARGFDLGDYLRLGSGELKSGGFRRESILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD ++ A + + +D KT LQE+ ++ P Y+V Sbjct: 118 LIGAIYLDADMDTARERILAWLADEFEGLTLVDTNKDPKTRLQEFLQSRSCELPRYEVVD 177 Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G H F V E+ + ++G S+R AEQVAAA L G+ Sbjct: 178 IQGEPHCRTFFVECEVVLLNNK--SRGQGVSRRIAEQVAAASALIALGV 224 >gi|298571391|gb|ADI87733.1| RNase III [uncultured Nitrospirae bacterium MY3-5B] Length = 263 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 114/236 (48%), Gaps = 17/236 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFN 61 ++LE+ I Y F ++ LL +++TH S H Q ER+EFLGD +LGL IS L+ Sbjct: 7 LTSLEQSINYYFNDKGLLIESVTHRSYYHECLDKSQPYNERVEFLGDAVLGLAISETLYT 66 Query: 62 HFDSA-----------KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 E E+S + LVS + SQ+A++++L +++++ Sbjct: 67 EHVFCRKNDKTIHTIFSESEMSRLKSYLVSKKILSQLAQDINLGNYLKLGKGEEMTGGRE 126 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAK 168 S+ A+ +E++ A++LDGG E A + ++ + D KTELQE + Sbjct: 127 KLSLLANTLEAIFGAVFLDGGYEAAKAVILGLYQPILTQILSNHTSFDYKTELQEISQKL 186 Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F PEYK+ SG DHD F V + G G +K+ A+ AA L+ G Sbjct: 187 FSSLPEYKLVLESGNDHDKDFVYEVYLDGKCMGTGSGKNKKTAQSAAACMALETLG 242 >gi|229086402|ref|ZP_04218578.1| Ribonuclease 3 [Bacillus cereus Rock3-44] gi|228696918|gb|EEL49727.1| Ribonuclease 3 [Bacillus cereus Rock3-44] Length = 245 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + T +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKTFQQKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL + + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGNLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G++ F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLDTVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|312869965|ref|ZP_07730104.1| ribonuclease III [Lactobacillus oris PB013-T2-3] gi|311094550|gb|EFQ52855.1| ribonuclease III [Lactobacillus oris PB013-T2-3] Length = 232 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 9/227 (3%) Query: 6 YSTLE----KRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57 L+ K F++ LL +A T +S + + + YER+EFLGD +L L++S Sbjct: 2 IEELQDYLAKEFDIHFSDPRLLAEAFTQASYVNEHPHQNLKFYERIEFLGDAVLELIVSE 61 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 ++ + +G+L+ ++V ++ S+ A+E +IR+ + D Sbjct: 62 YIYKRYPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEELAGARQRPGLLCD 121 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + ES + ALYLD G FV + + + DAKT LQE+ V EY Sbjct: 122 IFESFVGALYLDQGRPAVEKFVRRVIFPKLDMGWFDHAVDAKTSLQEFLQRDGDVLIEYH 181 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + SG +++P F V V +G A G SK+ AE AA LK+ Sbjct: 182 LLEESGTENNPAFHVDVAANGQVIADGQGSSKKQAEMQAAQRALKKL 228 >gi|253573486|ref|ZP_04850829.1| ribonuclease III [Paenibacillus sp. oral taxon 786 str. D14] gi|251847014|gb|EES75019.1| ribonuclease III [Paenibacillus sp. oral taxon 786 str. D14] Length = 232 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 69/214 (32%), Positives = 103/214 (48%), Gaps = 6/214 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ L++++ AF NR LL++A TH+S + ++ E ERLEFLGD +L L +S Sbjct: 1 MNG-DLKQLQQKLELAFQNRQLLKQAFTHASYVNEHRFSQYEDNERLEFLGDAVLELTVS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ F EGEL+ ++V + + A L+ ++ + ++ A Sbjct: 60 EHLYRLFPDRPEGELTKLRAAIVCEPSLVKFAENLEFGKYVLLGKGEELTGGRTRPALLA 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEY 175 DV ES I ALYLD G+E F+ ++ GK D KTELQE T EY Sbjct: 120 DVFESFIGALYLDQGLEAVTAFLHRHVFPNLTLDGKLSTGDFKTELQELTQHHGMGTLEY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 ++ GP H+ F V + G QG SK+ Sbjct: 180 RIIEERGPAHEREFVAEVRMDGRPLGQGTGRSKK 213 >gi|328948083|ref|YP_004365420.1| ribonuclease 3 [Treponema succinifaciens DSM 2489] gi|328448407|gb|AEB14123.1| Ribonuclease 3 [Treponema succinifaciens DSM 2489] Length = 248 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 7/230 (3%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTL 58 + + F N SLL+ A H S S+ + + ERLEFLGD +LGL + Sbjct: 18 KKELDEFCRHLKLHFKNYSLLDLAFHHRSYSNENTSYKRYNNERLEFLGDSVLGLATAAF 77 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQV-ARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+N KEG+L+ ++VS ++ + + ++ + ++ + +I AD Sbjct: 78 LYNDMSQNKEGDLAKIKANVVSEQSLAPIAVEKMHIDKYLVLGKGEELSGGRTKKAILAD 137 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEY 175 VE++I ALY+D G E A V + K +D KT LQE+ K P Y Sbjct: 138 AVEAVIGALYIDSGYESAERLVLELIIPEIRKVQSDHGSKDYKTLLQEFYQKKTNACPSY 197 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + +GPDHD F V V++ + +K++AEQ AA K GI Sbjct: 198 SLVRTTGPDHDRIFYVSVKLGDVVYGPASGKNKKSAEQAAAGVACKALGI 247 >gi|85705112|ref|ZP_01036212.1| Ribonuclease III [Roseovarius sp. 217] gi|85670434|gb|EAQ25295.1| Ribonuclease III [Roseovarius sp. 217] Length = 238 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 86/218 (39%), Positives = 123/218 (56%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + R+G+ F LL +ALTHSS+ ++ +RLEFLGDR+LGL++S L + Sbjct: 18 IKAFQTRLGHEFTATELLIRALTHSSMVTPNRDDNQRLEFLGDRVLGLVMSEALLSQDKG 77 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EG+L+ RFN+LV E C+ VARE+DL + +++ ++ D +E++IAA Sbjct: 78 ATEGQLAPRFNALVRKEACADVAREIDLGAVLKLGRSEMLSGGRRKEALLGDAMEAVIAA 137 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +YLD G + A V + W R + RDAKT LQEWA A+ P+Y R GPDH Sbjct: 138 IYLDAGFDAARAVVLRLWGARIGEVKDDARDAKTALQEWAQARGLPPPDYIELRRKGPDH 197 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P FT+ ++ A+ SKR AEQ AA +L R Sbjct: 198 APVFTISAQLKSGESAEATAGSKRQAEQTAAKALLARL 235 >gi|255019675|ref|ZP_05291754.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756] gi|254970898|gb|EET28381.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756] Length = 232 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 109/225 (48%), Gaps = 7/225 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + L++ IGY F + LL +ALTH S + ERLEFLGD L +++ L+ Sbjct: 1 MKS--LERLQQAIGYVFQDEVLLRQALTHRSAG---AQHNERLEFLGDAALNFVVAAELY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG LS LV ET +QVA E+ LA + + + + SI+AD +E Sbjct: 56 ARFPKVSEGNLSRMRARLVREETLAQVAGEIALADSLILGPGELRSGGARRDSIRADALE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A YLDGG A V + ++ + RD KT LQE+ + P Y + Sbjct: 116 AIIGAAYLDGGFAAAQGIVRQLIVPLMTEALGDEELRDPKTRLQEFLQGQGKPLPSYSLV 175 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ RF + G+ S+R AEQ AA ++L++ Sbjct: 176 EEKGQAHERRFVARCSVQGVPATDAEAGSRRKAEQQAAQQMLEQL 220 >gi|170709347|ref|ZP_02899762.1| ribonuclease III [Bacillus anthracis str. A0389] gi|170125742|gb|EDS94654.1| ribonuclease III [Bacillus anthracis str. A0389] Length = 245 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A YLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGAFYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|254486436|ref|ZP_05099641.1| ribonuclease III [Roseobacter sp. GAI101] gi|214043305|gb|EEB83943.1| ribonuclease III [Roseobacter sp. GAI101] Length = 228 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 84/214 (39%), Positives = 124/214 (57%), Gaps = 1/214 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + E RIGY F+ LL +A+TH+S+S + ++ +RLEFLGDR+LGL+++ L Sbjct: 1 MKLSADLRAFEGRIGYKFSKPELLIRAVTHASMSSANRDDNQRLEFLGDRVLGLVMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 A EG+L+ RFN+LV E C+ VARE+D+ + +++ ++ D + Sbjct: 61 LMLDPKATEGQLAPRFNALVRKEACADVAREIDMGAVLKLGRSEMLSGGRRKQALLGDAI 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+Y+DGG + A + + W R + RDAKT LQEWA A+ P Y T Sbjct: 121 EAIIAAVYMDGGFDAARDLIIRLWGDRVQTVKQDARDAKTALQEWAQARGFPPPSYVQTD 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 R GPDH P FT+ ++ A A + SKR AEQ Sbjct: 181 RQGPDHAPVFTITAKVQNGASAVAVAPSKRQAEQ 214 >gi|62184964|ref|YP_219749.1| ribonuclease III [Chlamydophila abortus S26/3] gi|81312866|sp|Q5L6E3|RNC_CHLAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|62148031|emb|CAH63783.1| ribonuclease III [Chlamydophila abortus S26/3] Length = 237 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 4/224 (1%) Query: 1 MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLIS 56 M+ + +E ++ + F LL ALTH S + E ERLEFLGD +L L+++ Sbjct: 1 MNNLINIKEVEAKLNFTFTQPKLLVTALTHPSYRNETATITEDSERLEFLGDAVLCLIVT 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F S EG LS +L++A +C Q L L ++ + R TS A Sbjct: 61 EHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLIGKGERIQNERGKTSAYA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 ++ E+++ A+YLDGG+ A + + K LQ+ P Y+ Sbjct: 121 NLFEAILGAVYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKHLRTLPVYQ 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P + + V ++ +G SK+ AE++AA + L Sbjct: 181 YEPWTSPQGASGYHIRVLVNHEVWGEGFALSKKEAEKLAAQQAL 224 >gi|332141899|ref|YP_004427637.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype'] gi|327551921|gb|AEA98639.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype'] Length = 228 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + Y L K IGY F N +LLE+ALTH S + + ERLEFLGD ILG++I L Sbjct: 1 MQGIDKYLRLYKAIGYTFNNEALLEQALTHRSAAK---QHNERLEFLGDAILGMIIGETL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F + EG+L+ ++LV +T +++A+E + + + K +SI AD V Sbjct: 58 FKRFPTVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+++ A+YLD G++ +D+ W+ R + +D+KT LQE+ + P Y+V Sbjct: 118 EAILGAIYLDSGMDEVRGVIDRLWESRINQLDPNAHPKDSKTRLQEFLQGRKQALPTYEV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223 SG DH F V ++ L A S+R AEQ AA L++ Sbjct: 178 LSISGKDHAQTFEVCCKVESLPDAVVAPGNSRRKAEQEAARLTLEKL 224 >gi|148642236|ref|YP_001272749.1| ribonuclease III (dsRNA-specific), Rnc [Methanobrevibacter smithii ATCC 35061] gi|148551253|gb|ABQ86381.1| ribonuclease III (dsRNA-specific), Rnc [Methanobrevibacter smithii ATCC 35061] Length = 223 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 3/220 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L ++ +R L + A TH S H +YERLEFLGD +L +++S L+ + Sbjct: 2 NLLEKFNILPKDRHLYDVAFTHGSYGTKHGLDYTYERLEFLGDSVLNMIVSEYLYKQYPD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG+L+ + V + EL L I++ D K + + SI ADV ES + A Sbjct: 62 YEEGKLTKLRANYVCQTALIYYSHELGLDKHIKIYGDDSKITENEVLSITADVFESFLGA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 ++LD GIE A ++ K F D K+ ++E+ A+ G H Sbjct: 122 IFLDQGIEFAKDYISKIIFPYIDAKKVFFFDYKSVIKEYGDAQEVDIEYKI-IDECGVPH 180 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + F + + I G G +K+ AEQ A+ + +K+ I Sbjct: 181 NKTFIISILIDGKEMGVGKGKNKKEAEQAASKQAMKKLKI 220 >gi|227878860|ref|ZP_03996766.1| ribonuclease III [Lactobacillus crispatus JV-V01] gi|256843377|ref|ZP_05548865.1| ribonuclease III [Lactobacillus crispatus 125-2-CHN] gi|256849801|ref|ZP_05555232.1| double stranded RNA-specific ribonuclease RNase [Lactobacillus crispatus MV-1A-US] gi|262046954|ref|ZP_06019914.1| ribonuclease III [Lactobacillus crispatus MV-3A-US] gi|293381175|ref|ZP_06627183.1| ribonuclease III [Lactobacillus crispatus 214-1] gi|227861551|gb|EEJ69164.1| ribonuclease III [Lactobacillus crispatus JV-V01] gi|256614797|gb|EEU19998.1| ribonuclease III [Lactobacillus crispatus 125-2-CHN] gi|256713290|gb|EEU28280.1| double stranded RNA-specific ribonuclease RNase [Lactobacillus crispatus MV-1A-US] gi|260572936|gb|EEX29496.1| ribonuclease III [Lactobacillus crispatus MV-3A-US] gi|290922215|gb|EFD99209.1| ribonuclease III [Lactobacillus crispatus 214-1] Length = 229 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 98/230 (42%), Gaps = 10/230 (4%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55 M + + L+ F N LLE+A THSS S+ + YE+LEFLGD +L L + Sbjct: 1 MVSTKFLKKLKDDYNIEFNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S ++ H+ EGEL+ +++V E S+ A E I + + K ++ Sbjct: 61 SNYVYLHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 DV E+ AL+LD G+ F+ K + + G Sbjct: 121 EDVFEAFNGALFLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIE 180 Query: 176 KVTFRSG--PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P H F V ++I+G ++G +K+AAEQ AA L++ Sbjct: 181 YTVISESQLPSH---FVVELKINGKVESKGEGHNKKAAEQQAAKFALQKL 227 >gi|256830196|ref|YP_003158924.1| ribonuclease III [Desulfomicrobium baculatum DSM 4028] gi|256579372|gb|ACU90508.1| ribonuclease III [Desulfomicrobium baculatum DSM 4028] Length = 242 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 110/221 (49%), Gaps = 3/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFD 64 L+ I Y F LL +ALTHSS ++ + ERLEFLGD +L L +S LF F Sbjct: 10 LQALQNEIHYEFKQVKLLIQALTHSSHANEHGCPHNERLEFLGDAVLELAVSQELFRKFP 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ ++LVS +Q AR + L + + + S+ +D +E+++ Sbjct: 70 EVQEGHLTKMRSALVSEGALAQAARRIHLGACLLLGRGEDVQGGREKNSVLSDALEAVLG 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD--AKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGG+E A T V+ + + + R K+ LQE + P Y + G Sbjct: 130 AVYLDGGLERAITCVNFLYAGQWPTPPETFRPRDFKSLLQEATQRIWKARPSYALRESHG 189 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P+H ++TVVV + + + S R AEQ AA + L + Sbjct: 190 PEHAKQYTVVVTMPDKTEVECEERSMRKAEQGAAEQALVQL 230 >gi|220927101|ref|YP_002502403.1| ribonuclease III [Methylobacterium nodulans ORS 2060] gi|219951708|gb|ACL62100.1| ribonuclease III [Methylobacterium nodulans ORS 2060] Length = 244 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 94/222 (42%), Positives = 131/222 (59%), Gaps = 1/222 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 STLE++IG+ FA++ LL +ALTH S + ESY+RLEFLGDR+LGL ++ LF Sbjct: 15 DLSTLEEKIGHRFADQELLVRALTHVSAATGP-ESYQRLEFLGDRVLGLAVADGLFAALP 73 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG+LS R + LV E+C+ VA D+ +++ + +I ADV E+++ Sbjct: 74 GADEGDLSRRLSGLVRRESCAAVATAWDVGPHLKLGAGEVYGGGRRNPAILADVCEAILG 133 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A++LD G E A T +D+ + G RD K+ LQEWA TP Y V R+GPD Sbjct: 134 AIFLDAGYEAAKTVIDRAFAAGNEVEGTRTRDPKSALQEWAQGLGLPTPTYAVVERAGPD 193 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 H P F + + G+AP G+ SKR AEQ AA +L REG+W Sbjct: 194 HAPIFRIEARVLGVAPGVGVGGSKRLAEQEAARLLLMREGVW 235 >gi|50085655|ref|YP_047165.1| ribonuclease III [Acinetobacter sp. ADP1] gi|81392620|sp|Q6F9C2|RNC_ACIAD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|49531631|emb|CAG69343.1| ribonuclease III, ds RNA [Acinetobacter sp. ADP1] Length = 230 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 75/219 (34%), Positives = 111/219 (50%), Gaps = 5/219 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ RIGY F LL+ ALTH S+S ++ +YERLEFLGD +LG++I+ L+ + Sbjct: 12 RLQSRIGYEFKQLELLQLALTHRSVS--HKYNYERLEFLGDSLLGMIIANYLYQAYPHEN 69 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ +LV E ++A +L L+ + +S+ K SI AD VE++I A+Y Sbjct: 70 EGRLTRMRATLVRQEALGKIANDLKLSRCLILSTGELKSGGHHRESILADTVEAIIGAIY 129 Query: 128 LDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +D ++ +D K+ LQE+ A+ P Y+V G Sbjct: 130 VDSNDLNLLKNIVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDA 189 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + F VV + GL G S+R AEQ AAAE+LK Sbjct: 190 PNQHFKVVCLVEGLPRVMGEGSSRRFAEQTAAAEILKLL 228 >gi|30021937|ref|NP_833568.1| ribonuclease III [Bacillus cereus ATCC 14579] gi|206971258|ref|ZP_03232209.1| ribonuclease III [Bacillus cereus AH1134] gi|218232410|ref|YP_002368650.1| ribonuclease III [Bacillus cereus B4264] gi|218899002|ref|YP_002447413.1| ribonuclease III [Bacillus cereus G9842] gi|228902352|ref|ZP_04066509.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222] gi|228909674|ref|ZP_04073497.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200] gi|228922603|ref|ZP_04085903.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954126|ref|ZP_04116154.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960065|ref|ZP_04121729.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228973866|ref|ZP_04134442.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980456|ref|ZP_04140766.1| Ribonuclease 3 [Bacillus thuringiensis Bt407] gi|229047536|ref|ZP_04193126.1| Ribonuclease 3 [Bacillus cereus AH676] gi|229071347|ref|ZP_04204570.1| Ribonuclease 3 [Bacillus cereus F65185] gi|229081104|ref|ZP_04213614.1| Ribonuclease 3 [Bacillus cereus Rock4-2] gi|229111320|ref|ZP_04240873.1| Ribonuclease 3 [Bacillus cereus Rock1-15] gi|229129125|ref|ZP_04258098.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4] gi|229146420|ref|ZP_04274791.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24] gi|229152048|ref|ZP_04280243.1| Ribonuclease 3 [Bacillus cereus m1550] gi|229180125|ref|ZP_04307469.1| Ribonuclease 3 [Bacillus cereus 172560W] gi|229192018|ref|ZP_04318988.1| Ribonuclease 3 [Bacillus cereus ATCC 10876] gi|296504344|ref|YP_003666044.1| ribonuclease III [Bacillus thuringiensis BMB171] gi|38372411|sp|Q819V8|RNC_BACCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735367|sp|B7IUK8|RNC_BACC2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735368|sp|B7HDX2|RNC_BACC4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|29897493|gb|AAP10769.1| Ribonuclease III [Bacillus cereus ATCC 14579] gi|206734030|gb|EDZ51201.1| ribonuclease III [Bacillus cereus AH1134] gi|218160367|gb|ACK60359.1| ribonuclease III [Bacillus cereus B4264] gi|218544165|gb|ACK96559.1| ribonuclease III [Bacillus cereus G9842] gi|228591569|gb|EEK49418.1| Ribonuclease 3 [Bacillus cereus ATCC 10876] gi|228603334|gb|EEK60811.1| Ribonuclease 3 [Bacillus cereus 172560W] gi|228631397|gb|EEK88031.1| Ribonuclease 3 [Bacillus cereus m1550] gi|228637053|gb|EEK93512.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24] gi|228654362|gb|EEL10227.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4] gi|228672096|gb|EEL27387.1| Ribonuclease 3 [Bacillus cereus Rock1-15] gi|228702148|gb|EEL54624.1| Ribonuclease 3 [Bacillus cereus Rock4-2] gi|228711801|gb|EEL63753.1| Ribonuclease 3 [Bacillus cereus F65185] gi|228723783|gb|EEL75138.1| Ribonuclease 3 [Bacillus cereus AH676] gi|228779276|gb|EEM27533.1| Ribonuclease 3 [Bacillus thuringiensis Bt407] gi|228785891|gb|EEM33894.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799581|gb|EEM46534.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805446|gb|EEM52037.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228837032|gb|EEM82373.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228849963|gb|EEM94794.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200] gi|228857321|gb|EEN01824.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222] gi|296325396|gb|ADH08324.1| ribonuclease III [Bacillus thuringiensis BMB171] gi|326941618|gb|AEA17514.1| ribonuclease III [Bacillus thuringiensis serovar chinensis CT-43] Length = 245 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|75762036|ref|ZP_00741948.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490482|gb|EAO53786.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 262 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 36 FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 95 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 96 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 155 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 156 FIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 215 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 216 KGPAHNREFVSRVTLNNVALGLGSGKSKK 244 >gi|30263852|ref|NP_846229.1| ribonuclease III [Bacillus anthracis str. Ames] gi|47529278|ref|YP_020627.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor'] gi|49186699|ref|YP_029951.1| ribonuclease III [Bacillus anthracis str. Sterne] gi|49478414|ref|YP_037910.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165873286|ref|ZP_02217894.1| ribonuclease III [Bacillus anthracis str. A0488] gi|167636662|ref|ZP_02394952.1| ribonuclease III [Bacillus anthracis str. A0442] gi|167642023|ref|ZP_02400254.1| ribonuclease III [Bacillus anthracis str. A0193] gi|170689645|ref|ZP_02880826.1| ribonuclease III [Bacillus anthracis str. A0465] gi|177655964|ref|ZP_02937116.1| ribonuclease III [Bacillus anthracis str. A0174] gi|190565836|ref|ZP_03018755.1| ribonuclease III [Bacillus anthracis Tsiankovskii-I] gi|196035867|ref|ZP_03103269.1| ribonuclease III [Bacillus cereus W] gi|196042325|ref|ZP_03109601.1| ribonuclease III [Bacillus cereus NVH0597-99] gi|196047446|ref|ZP_03114658.1| ribonuclease III [Bacillus cereus 03BB108] gi|218904979|ref|YP_002452813.1| ribonuclease III [Bacillus cereus AH820] gi|225865830|ref|YP_002751208.1| ribonuclease III [Bacillus cereus 03BB102] gi|227813243|ref|YP_002813252.1| ribonuclease III [Bacillus anthracis str. CDC 684] gi|228916486|ref|ZP_04080052.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928897|ref|ZP_04091929.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935163|ref|ZP_04097990.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947568|ref|ZP_04109858.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229092891|ref|ZP_04224025.1| Ribonuclease 3 [Bacillus cereus Rock3-42] gi|229123363|ref|ZP_04252567.1| Ribonuclease 3 [Bacillus cereus 95/8201] gi|229186089|ref|ZP_04313258.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1] gi|229599971|ref|YP_002868086.1| ribonuclease III [Bacillus anthracis str. A0248] gi|254683443|ref|ZP_05147303.1| ribonuclease III [Bacillus anthracis str. CNEVA-9066] gi|254721380|ref|ZP_05183169.1| ribonuclease III [Bacillus anthracis str. A1055] gi|254735887|ref|ZP_05193593.1| ribonuclease III [Bacillus anthracis str. Western North America USA6153] gi|254739520|ref|ZP_05197217.1| ribonuclease III [Bacillus anthracis str. Kruger B] gi|254751172|ref|ZP_05203211.1| ribonuclease III [Bacillus anthracis str. Vollum] gi|254756720|ref|ZP_05208749.1| ribonuclease III [Bacillus anthracis str. Australia 94] gi|38372420|sp|Q81WI8|RNC_BACAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|81395098|sp|Q6HEW6|RNC_BACHK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735366|sp|B7JJT6|RNC_BACC0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807235|sp|C3P5Q0|RNC_BACAA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807236|sp|C3L778|RNC_BACAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807237|sp|C1EP73|RNC_BACC3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|30258496|gb|AAP27715.1| ribonuclease III [Bacillus anthracis str. Ames] gi|47504426|gb|AAT33102.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor'] gi|49180626|gb|AAT56002.1| ribonuclease III [Bacillus anthracis str. Sterne] gi|49329970|gb|AAT60616.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164710971|gb|EDR16540.1| ribonuclease III [Bacillus anthracis str. A0488] gi|167510022|gb|EDR85437.1| ribonuclease III [Bacillus anthracis str. A0193] gi|167527913|gb|EDR90729.1| ribonuclease III [Bacillus anthracis str. A0442] gi|170666390|gb|EDT17172.1| ribonuclease III [Bacillus anthracis str. A0465] gi|172079908|gb|EDT65015.1| ribonuclease III [Bacillus anthracis str. A0174] gi|190562755|gb|EDV16721.1| ribonuclease III [Bacillus anthracis Tsiankovskii-I] gi|195991516|gb|EDX55482.1| ribonuclease III [Bacillus cereus W] gi|196021754|gb|EDX60449.1| ribonuclease III [Bacillus cereus 03BB108] gi|196026847|gb|EDX65478.1| ribonuclease III [Bacillus cereus NVH0597-99] gi|218539426|gb|ACK91824.1| ribonuclease III [Bacillus cereus AH820] gi|225790989|gb|ACO31206.1| ribonuclease III [Bacillus cereus 03BB102] gi|227006213|gb|ACP15956.1| ribonuclease III [Bacillus anthracis str. CDC 684] gi|228597265|gb|EEK54916.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1] gi|228660139|gb|EEL15775.1| Ribonuclease 3 [Bacillus cereus 95/8201] gi|228690513|gb|EEL44296.1| Ribonuclease 3 [Bacillus cereus Rock3-42] gi|228812088|gb|EEM58419.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824528|gb|EEM70333.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830704|gb|EEM76309.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843065|gb|EEM88147.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229264379|gb|ACQ46016.1| ribonuclease III [Bacillus anthracis str. A0248] Length = 245 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|89094542|ref|ZP_01167480.1| ribonuclease III [Oceanospirillum sp. MED92] gi|89081141|gb|EAR60375.1| ribonuclease III [Oceanospirillum sp. MED92] Length = 226 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 88/221 (39%), Positives = 125/221 (56%), Gaps = 6/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L +RIG+ F++ SL E ALTH S ++ ERLEFLGD IL +I+ L+ F Sbjct: 5 VNELARRIGHDFSDLSLFELALTHRSCGK---KNNERLEFLGDSILNFVIADDLYARFPK 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 AKEGELS +V T S+VAREL L ++R+ S K SI AD VE++I A Sbjct: 62 AKEGELSRLRARMVKGVTLSEVARELGLGDYLRLGSGELKSGGFRRDSILADAVEAIIGA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD ++ A ++ K+++QR L + +D+KT LQE+ ++ PEY++T G Sbjct: 122 IYLDSDMDTARAYILKWFEQRLSTLDLNESLKDSKTRLQEFLQSRRLALPEYELTNVEGE 181 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 H F + +SGL PA+G S+R AEQ AA L Sbjct: 182 AHAQTFYIDCRVSGLNNPAKGTGSSRRQAEQEAAKNALTAL 222 >gi|65321177|ref|ZP_00394136.1| COG0571: dsRNA-specific ribonuclease [Bacillus anthracis str. A2012] gi|118479071|ref|YP_896222.1| ribonuclease III [Bacillus thuringiensis str. Al Hakam] gi|118418296|gb|ABK86715.1| RNAse III [Bacillus thuringiensis str. Al Hakam] Length = 262 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 36 FKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 95 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 96 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 155 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 156 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 215 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 216 KGPAHNREFVSRVTLNNVALGLGSGKSKK 244 >gi|312135000|ref|YP_004002338.1| ribonuclease iii [Caldicellulosiruptor owensensis OL] gi|311775051|gb|ADQ04538.1| ribonuclease III [Caldicellulosiruptor owensensis OL] Length = 222 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 1/218 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +EK +GY F +++LL ALTH S +HS + YERLEFLGD L L +S L+ +F Sbjct: 2 EEIEKALGYKFEDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLYVYFPEL 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V ++T S+VA +L+L + I + + SI ADV+E+L A+ Sbjct: 62 SEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFYENKSILADVLEALFGAI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +++ G + + K K+ + + + + + + Sbjct: 122 FIESGFDTVEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQREGQKKIVYKDCEILE-K 180 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + I G ++G SK+ A+Q AA + L G Sbjct: 181 KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218 >gi|187928023|ref|YP_001898510.1| ribonuclease III [Ralstonia pickettii 12J] gi|238691793|sp|B2U981|RNC_RALPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|187724913|gb|ACD26078.1| Ribonuclease III [Ralstonia pickettii 12J] Length = 256 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 75/220 (34%), Positives = 108/220 (49%), Gaps = 6/220 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S S ERLEFLGD IL ++ +L+ F Sbjct: 1 MSLDALQQRLGYRFSKPELLQQALTHRSHS---AMHNERLEFLGDSILNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L +R+ K SI AD +E++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + K + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPLYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220 G H+ +F V I L G S+RAAEQ AA L Sbjct: 178 GAAHNQQFEVECSIPKLEIRVSGSGASRRAAEQSAAKLAL 217 >gi|192359963|ref|YP_001983041.1| ribonuclease III [Cellvibrio japonicus Ueda107] gi|190686128|gb|ACE83806.1| ribonuclease III [Cellvibrio japonicus Ueda107] Length = 225 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 118/228 (51%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L+Y LE+R+GY+F ++ L+ ALTH S + ERLEFLGD IL LI LF Sbjct: 1 MINLKYQRLEQRLGYSFNDQRQLQLALTHRS---HGASNNERLEFLGDSILNFLIGEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 D A+EG++S + LV +T +++ARE +L + + K SI AD VE Sbjct: 58 LRLDEAREGQMSRLRSQLVRGDTLAELAREFELGECLVLGEGELKSGGHRRDSILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YL+ G++ V ++ R +D K+ LQE+ A+ PEY+V Sbjct: 118 AIIGAIYLESGLDTCRERVLAWYGDRLDAISLDTSAKDPKSRLQEYLQAQRQPLPEYRVV 177 Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G H FT+ ++ Q S+R AE+ AAA +LK + Sbjct: 178 EVGGEGHAQVFTIECHVAIAKQSTQAQASSRREAEKQAAAAMLKLLKL 225 >gi|42526537|ref|NP_971635.1| ribonuclease III [Treponema denticola ATCC 35405] gi|81412559|sp|Q73NX5|RNC_TREDE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|41816730|gb|AAS11516.1| ribonuclease III [Treponema denticola ATCC 35405] gi|325473478|gb|EGC76673.1| ribonuclease 3 [Treponema denticola F0402] Length = 246 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62 +K+ G F + LL+ A H S S+ + + ERLEFLGD +LGL+ ++ L+ Sbjct: 16 LLEFQKQAGLKFKDLRLLDLAFHHRSFSNEHNNFHANNERLEFLGDSVLGLVAASYLYKS 75 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F+ EGEL+ S VS + S+ A +L++++++ + +I AD +E++ Sbjct: 76 FEDRPEGELAKIKASAVSEDALSKTASKLNISNYLVLGRGEEMSGGREKKAILADALEAV 135 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A Y+D G + A FV + + KF D K+ LQE KF P+Y++ Sbjct: 136 IGAYYIDSGFKAAQKFVLRLLESTIHSVLEKKFISDYKSLLQELVQKKFKTVPKYELKKA 195 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDHD F V I+G +K+ AEQ A + Sbjct: 196 SGPDHDRTFWFSVSINGKVYGPLSGKTKKEAEQSVAKVAYENL 238 >gi|315453268|ref|YP_004073538.1| ribonuclease III [Helicobacter felis ATCC 49179] gi|315132320|emb|CBY82948.1| ribonuclease III [Helicobacter felis ATCC 49179] Length = 225 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 4/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L++R+ Y F + +LL++ALTH S + + ERLEFLGD +L L+++ +L+ F Sbjct: 2 LEKLQERLAYHFQDMNLLQQALTHKSTKTPH--NNERLEFLGDAVLDLVVAEILYARFAD 59 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG+LS SLV+ + ++A L L I +S + SI A+ E+L+ A Sbjct: 60 LQEGDLSKMRASLVNEKAFFKLASFLQLQDCILISPAEANNHGHTKPSILANAFEALMGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+E T + ++ D K+ LQE A+F V P Y + SGP Sbjct: 120 IYLESGLEPIKTLMTRFLDHVYPDLSLQSTFMDYKSALQELTQARFKVVPTYTLKSESGP 179 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH +F + + I SK+ A+Q+ A ++ Sbjct: 180 DHAKQFEMQIFILDKLYGTCTAKSKKEAQQLCAQMAYQQL 219 >gi|42782941|ref|NP_980188.1| ribonuclease III [Bacillus cereus ATCC 10987] gi|47570283|ref|ZP_00240932.1| ribonuclease III [Bacillus cereus G9241] gi|206978506|ref|ZP_03239364.1| ribonuclease III [Bacillus cereus H3081.97] gi|217961269|ref|YP_002339837.1| ribonuclease III [Bacillus cereus AH187] gi|222097294|ref|YP_002531351.1| ribonuclease iii [Bacillus cereus Q1] gi|228986992|ref|ZP_04147118.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157425|ref|ZP_04285503.1| Ribonuclease 3 [Bacillus cereus ATCC 4342] gi|229197960|ref|ZP_04324674.1| Ribonuclease 3 [Bacillus cereus m1293] gi|81409451|sp|Q732M1|RNC_BACC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735369|sp|B7HLI2|RNC_BACC7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807238|sp|B9IVD8|RNC_BACCQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|42738868|gb|AAS42796.1| ribonuclease III [Bacillus cereus ATCC 10987] gi|47553047|gb|EAL11449.1| ribonuclease III [Bacillus cereus G9241] gi|206743285|gb|EDZ54734.1| ribonuclease III [Bacillus cereus H3081.97] gi|217063842|gb|ACJ78092.1| ribonuclease III [Bacillus cereus AH187] gi|221241352|gb|ACM14062.1| ribonuclease III [Bacillus cereus Q1] gi|228585439|gb|EEK43543.1| Ribonuclease 3 [Bacillus cereus m1293] gi|228626152|gb|EEK82901.1| Ribonuclease 3 [Bacillus cereus ATCC 4342] gi|228772770|gb|EEM21210.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324327746|gb|ADY23006.1| ribonuclease III [Bacillus thuringiensis serovar finitimus YBT-020] Length = 245 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|229825033|ref|ZP_04451102.1| hypothetical protein GCWU000182_00383 [Abiotrophia defectiva ATCC 49176] gi|229790780|gb|EEP26894.1| hypothetical protein GCWU000182_00383 [Abiotrophia defectiva ATCC 49176] Length = 247 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 110/227 (48%), Gaps = 5/227 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIST 57 + +E+ IGYAF NR L A +HSS + + ER+EFLGD +L L+ S Sbjct: 12 KPEKAEKIEQTIGYAFKNRKFLTNAFSHSSFVNEKHLSKSDCNERMEFLGDAVLELVTSE 71 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LFN +EGEL+ LV + ARE+ L+ ++ + SI +D Sbjct: 72 FLFNGHKDMQEGELTKLRARLVCEPALAYSAREIGLSDYLLLGHGEAITGGRNRDSILSD 131 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+YLDGG+ A F++K+ K D+KT QE + T YK+ Sbjct: 132 AMEALIGAIYLDGGLTNAKEFIEKHVLNDIEHK-KLFFDSKTIFQEMVQSDNMGTISYKL 190 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GPDHD +F V I G +K+AAEQVAA + + Sbjct: 191 LAEYGPDHDKKFKEAVYIGEKEYGVGEGHTKKAAEQVAAYNGILKLK 237 >gi|69246105|ref|ZP_00603811.1| Ribonuclease III [Enterococcus faecium DO] gi|257878770|ref|ZP_05658423.1| ribonuclease III [Enterococcus faecium 1,230,933] gi|257881410|ref|ZP_05661063.1| ribonuclease III [Enterococcus faecium 1,231,502] gi|257885678|ref|ZP_05665331.1| ribonuclease III [Enterococcus faecium 1,231,501] gi|257887975|ref|ZP_05667628.1| ribonuclease III [Enterococcus faecium 1,141,733] gi|257890628|ref|ZP_05670281.1| ribonuclease III [Enterococcus faecium 1,231,410] gi|257893222|ref|ZP_05672875.1| ribonuclease III [Enterococcus faecium 1,231,408] gi|257896407|ref|ZP_05676060.1| ribonuclease III [Enterococcus faecium Com12] gi|257899381|ref|ZP_05679034.1| ribonuclease III [Enterococcus faecium Com15] gi|260558338|ref|ZP_05830534.1| ribonuclease III [Enterococcus faecium C68] gi|261207043|ref|ZP_05921732.1| ribonuclease III [Enterococcus faecium TC 6] gi|289565324|ref|ZP_06445774.1| ribonuclease III [Enterococcus faecium D344SRF] gi|293379492|ref|ZP_06625636.1| ribonuclease III [Enterococcus faecium PC4.1] gi|293556818|ref|ZP_06675379.1| ribonuclease III [Enterococcus faecium E1039] gi|293562991|ref|ZP_06677458.1| ribonuclease III [Enterococcus faecium E1162] gi|293567880|ref|ZP_06679221.1| ribonuclease III [Enterococcus faecium E1071] gi|293570730|ref|ZP_06681780.1| ribonuclease III [Enterococcus faecium E980] gi|294614479|ref|ZP_06694394.1| ribonuclease III [Enterococcus faecium E1636] gi|294618515|ref|ZP_06698077.1| ribonuclease III [Enterococcus faecium E1679] gi|294621998|ref|ZP_06701142.1| ribonuclease III [Enterococcus faecium U0317] gi|68195400|gb|EAN09847.1| Ribonuclease III [Enterococcus faecium DO] gi|257812998|gb|EEV41756.1| ribonuclease III [Enterococcus faecium 1,230,933] gi|257817068|gb|EEV44396.1| ribonuclease III [Enterococcus faecium 1,231,502] gi|257821534|gb|EEV48664.1| ribonuclease III [Enterococcus faecium 1,231,501] gi|257824029|gb|EEV50961.1| ribonuclease III [Enterococcus faecium 1,141,733] gi|257826988|gb|EEV53614.1| ribonuclease III [Enterococcus faecium 1,231,410] gi|257829601|gb|EEV56208.1| ribonuclease III [Enterococcus faecium 1,231,408] gi|257832972|gb|EEV59393.1| ribonuclease III [Enterococcus faecium Com12] gi|257837293|gb|EEV62367.1| ribonuclease III [Enterococcus faecium Com15] gi|260075512|gb|EEW63818.1| ribonuclease III [Enterococcus faecium C68] gi|260078671|gb|EEW66373.1| ribonuclease III [Enterococcus faecium TC 6] gi|289162814|gb|EFD10664.1| ribonuclease III [Enterococcus faecium D344SRF] gi|291589465|gb|EFF21272.1| ribonuclease III [Enterococcus faecium E1071] gi|291592656|gb|EFF24250.1| ribonuclease III [Enterococcus faecium E1636] gi|291595215|gb|EFF26546.1| ribonuclease III [Enterococcus faecium E1679] gi|291598425|gb|EFF29498.1| ribonuclease III [Enterococcus faecium U0317] gi|291600902|gb|EFF31193.1| ribonuclease III [Enterococcus faecium E1039] gi|291605117|gb|EFF34584.1| ribonuclease III [Enterococcus faecium E1162] gi|291609202|gb|EFF38474.1| ribonuclease III [Enterococcus faecium E980] gi|292642015|gb|EFF60181.1| ribonuclease III [Enterococcus faecium PC4.1] Length = 228 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 5/214 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M L++ F + +LLE+A THSS + ++ ERLEFLGD +L L++S Sbjct: 1 MDNQLTKELKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+L+ ++V ++ S+ A+E ++ + ++ Sbjct: 61 QYLFRLYPHLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD G + F++K + D KT+LQE V+ EY Sbjct: 121 DLFEAFLGALYLDQGFDTTHAFIEKVIFPKVKAGAFSHEMDHKTKLQEVLQKSGDVSIEY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 ++ GP H+ F + V + G SK+ Sbjct: 181 RLINEEGPAHERVFWIEVYVDDQLIGTGQGKSKK 214 >gi|270290359|ref|ZP_06196584.1| ribonuclease III [Pediococcus acidilactici 7_4] gi|270281140|gb|EFA26973.1| ribonuclease III [Pediococcus acidilactici 7_4] Length = 232 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 107/228 (46%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L + F LL++A T +S + + + YER+EFLGD +L L++S Sbjct: 1 MLKDLEDDLSEMFDIHFTKHELLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVLQLVVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + +G+L+ ++V + S A+E +IR+ K S+ Sbjct: 61 EYLYKRYPEMPQGKLTRLRAAMVCEASFSDFAKECHFDRYIRLGKGEEKSGARQRPSLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ ES I ALYLD G + FV + + D K+ELQE V Y Sbjct: 121 DIFESFIGALYLDQGRQAVEKFVRQVIFPKLDEGRFDHIIDHKSELQELLQRNGEVEINY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ +GPD+D FTV V + A+G SK+AAEQ AA + L++ Sbjct: 181 ELISETGPDNDLVFTVQVSAANQVLAKGSGHSKKAAEQNAANKALQKL 228 >gi|114331755|ref|YP_747977.1| ribonuclease III [Nitrosomonas eutropha C91] gi|122313494|sp|Q0AF70|RNC_NITEC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|114308769|gb|ABI60012.1| RNAse III [Nitrosomonas eutropha C91] Length = 245 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 103/220 (46%), Gaps = 6/220 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y+ +++GY F LL++ALTH S+ + ERLEFLGD +L +STLLF F Sbjct: 23 DYTVFSQKLGYTFKQPDLLQEALTHRSLGF---PNNERLEFLGDSVLNCAVSTLLFKRFL 79 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ + V+ + Q+A L + I + RK SI A+ +E++I Sbjct: 80 LLPEGDLTRLRANFVNQDALHQLASALGIGELILLGDGERKSGGHQRPSILANAMEAIIG 139 Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL+ G E + + L F +D KT LQE+ ++ PEY G Sbjct: 140 AIYLESGFEKVDQVIVALYDPLLNQLDPDLFGKDPKTLLQEYLQSRKVDLPEYSTLLTRG 199 Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 H F V I A G S+R AEQ AA K Sbjct: 200 DAHAQVFHVECVIPEFAIRTSGEGTSRRRAEQEAARRAYK 239 >gi|307545610|ref|YP_003898089.1| ribonuclease III [Halomonas elongata DSM 2581] gi|307217634|emb|CBV42904.1| ribonuclease III [Halomonas elongata DSM 2581] Length = 229 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 117/226 (51%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS +RIG+ FA LLE A+TH S + ERLEFLGD I+ +I+ LF Sbjct: 1 MSN-SLDIFSRRIGHRFAQPELLELAMTHRSYG---GRNNERLEFLGDSIVNFVIAEDLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+EG+LS LV +T +++ARE+ +R+ S K SI AD VE Sbjct: 57 QRFPQAREGQLSRLRARLVKGQTLAELAREMSFGECLRLGSGEMKSGGHRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G++ A T V ++ +R + ++D KT LQE+ ++ P Y+V Sbjct: 117 AVIGAIYLDAGMDTARTRVLSWFAERLETINLQDTQKDPKTRLQEFLQSRQVALPRYEVI 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G H FTV + L G+ S+R AEQ AA + L + Sbjct: 177 SVEGEAHAQTFTVECHVEMLDEHTLGIGSSRRHAEQQAAEQALSQL 222 >gi|302872013|ref|YP_003840649.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47] gi|302574872|gb|ADL42663.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47] Length = 222 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 1/218 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +EK +GY F +++LL+ ALTH S +HS + YERLEFLGD L L +S L+ +F Sbjct: 2 EEIEKALGYKFEDKNLLKLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLYVYFPEL 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V ++T S+VA +L+L + I + + SI ADV+E+L A+ Sbjct: 62 SEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEALFGAI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +++ G + + K K+ + + + + + + Sbjct: 122 FIESGFDTVEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQREGQKKIVYKDCEILE-K 180 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + I G ++G SK+ A+Q AA + L G Sbjct: 181 KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218 >gi|52141634|ref|YP_085190.1| ribonuclease III [Bacillus cereus E33L] gi|81686565|sp|Q636H7|RNC_BACCZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|51975103|gb|AAU16653.1| ribonuclease III [Bacillus cereus E33L] Length = 245 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGGLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|262196731|ref|YP_003267940.1| ribonuclease III [Haliangium ochraceum DSM 14365] gi|262080078|gb|ACY16047.1| ribonuclease III [Haliangium ochraceum DSM 14365] Length = 282 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 80/217 (36%), Positives = 115/217 (52%), Gaps = 4/217 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTL 58 A+ S LE +G+ F R+LLE A+TH S ++ ERLEFLGD +L L + + Sbjct: 41 HAIDLSGLEDILGHRFRKRALLEAAVTHRSFANEQAVPCTDNERLEFLGDAVLDLAVGHM 100 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L + EG LSV +VS + S++A L L +++R+ R+ SI AD Sbjct: 101 LMDVHPDLSEGRLSVTRAQIVSEKGLSEIAYGLGLGTYLRLGKGERRSGGQNKASILADS 160 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E++IAA+YLDGG + A V + + + D KT LQE A A+ TP Y+V Sbjct: 161 LEAVIAAVYLDGGFDAAWKLVARLFARTLEEVEISGFYDHKTRLQELAQARLKSTPAYRV 220 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 +GPDH F VV EI G + + SK+ AEQ+ Sbjct: 221 VDETGPDHAKLFEVVAEIDGREWGRAIGSSKKRAEQM 257 >gi|312793340|ref|YP_004026263.1| ribonuclease iii [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180480|gb|ADQ40650.1| ribonuclease III [Caldicellulosiruptor kristjanssonii 177R1B] Length = 222 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 1/218 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+ +GY F +++LL ALTH S +HS + YER EFLGD L L +S LF HF Sbjct: 2 EEIERALGYTFKDKNLLRLALTHKSATHSNKNCYERFEFLGDAALELAVSKYLFVHFPEL 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V ++T S+VA +L+L + I + + SI ADV+E++ A+ Sbjct: 62 SEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +++ G ++ + K K+ + + + + + + Sbjct: 122 FIESGFDIVEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQREGNKKIVYKDCEIIE-K 180 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + I G ++G SK+ A+Q AA + L G Sbjct: 181 KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218 >gi|304384763|ref|ZP_07367109.1| ribonuclease III [Pediococcus acidilactici DSM 20284] gi|304328957|gb|EFL96177.1| ribonuclease III [Pediococcus acidilactici DSM 20284] Length = 235 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 5/222 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 L + F LL++A T +S + + + YER+EFLGD +L L++S L+ Sbjct: 10 DDLSEMFDIHFTKHELLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVLQLVVSEYLYKR 69 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + +G+L+ ++V + S A+E +IR+ K S+ D+ ES Sbjct: 70 YPEMPQGKLTRLRAAMVCEASFSDFAKECHFDRYIRLGKGEEKSGARQRPSLLCDIFESF 129 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 I ALYLD G + FV + + D K+ELQE V Y++ + Sbjct: 130 IGALYLDQGRQAVEKFVRQVIFPKLDEGRFDHIIDHKSELQELLQRNGEVEINYELISET 189 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPD+D FTV V + A+G SK+AAEQ AA + L++ Sbjct: 190 GPDNDLVFTVQVSAANQVLAKGSGHSKKAAEQNAANKALQKL 231 >gi|319779260|ref|YP_004130173.1| Ribonuclease III [Taylorella equigenitalis MCE9] gi|317109284|gb|ADU92030.1| Ribonuclease III [Taylorella equigenitalis MCE9] Length = 251 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ L+K++ Y+F + LL +ALTH S S ++ ERLEFLGD IL +++LLF Sbjct: 1 MKLDELQKKLNYSFKDIKLLNRALTHRSFSSTH---NERLEFLGDSILNFSVASLLFKKL 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ S V+ +T +++A L L I++ K SI AD VE++ Sbjct: 58 KDQAEGDLTRIRASYVNQDTLAKIANNLKLQDLIKLGEGELKSGGFKRPSILADAVEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+Y+D IE A V+ ++ RD+KT LQE+ AK P YKV + Sbjct: 118 GAIYIDSNIEQAQKVVESIYEPLMKNVDFSTVGRDSKTLLQEFVQAKRVPLPSYKVLNIT 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G HD F V + AQ + S+R+AEQ AA VL+ Sbjct: 178 GAAHDQEFEVECTVELFDVSAQAVGASRRSAEQAAATLVLE 218 >gi|254468787|ref|ZP_05082193.1| ribonuclease III [beta proteobacterium KB13] gi|207087597|gb|EDZ64880.1| ribonuclease III [beta proteobacterium KB13] Length = 228 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L LE + Y F + +LL+K+LTH S + ERLEFLGD IL I+ LF Sbjct: 1 MDDLIVKQLEDLLQYKFKDINLLQKSLTHRSFDGE---NNERLEFLGDSILNFTIAEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + EG+LS SLV + T +++A ++ L FI + K SI AD E Sbjct: 58 IKFPNIPEGDLSRLRASLVKSGTLAEIAVKIKLGDFIFLGEGELKSAGWRRPSILADTFE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I ALYLDGG+ A TF+ +Y++ + K +D KT LQE +K + P+Y+V Sbjct: 118 AIIGALYLDGGLRPAQTFIHQYFQDWLSEINPAKVDKDPKTSLQELLQSKKLMLPKYEVA 177 Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220 G H F V I+ L+ + S+RAAEQ AA+ L Sbjct: 178 DIKGEAHAQEFIVKCNIAQLSITTEASGSSRRAAEQEAASIAL 220 >gi|261408033|ref|YP_003244274.1| ribonuclease III [Paenibacillus sp. Y412MC10] gi|329929588|ref|ZP_08283295.1| ribonuclease III [Paenibacillus sp. HGF5] gi|261284496|gb|ACX66467.1| ribonuclease III [Paenibacillus sp. Y412MC10] gi|328936233|gb|EGG32685.1| ribonuclease III [Paenibacillus sp. HGF5] Length = 233 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 63/214 (29%), Positives = 97/214 (45%), Gaps = 5/214 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L+ ++ F N LL++A TH+S + ++ + ERLEFLGD +L L +S Sbjct: 1 MLSGDLKQLQHKLQIQFRNAMLLKQAFTHASYVNEHRFSQSQDNERLEFLGDAVLELTVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+N F EGEL+ ++V + Q A LD ++ + ++ A Sbjct: 61 EFLYNLFPDRPEGELTKLRAAIVCEPSLVQFAVSLDFGRYVLLGKGEEMTGGRTRPALLA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 DV ES + ALYLD G+E F+ + + D KTELQE EY Sbjct: 121 DVFESFVGALYLDQGLEAVRRFLSDHVFPTVTVNGRPQMSDYKTELQELTQHHGMGALEY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 ++ GP H+ F V + +G SK+ Sbjct: 181 RIVEERGPAHEREFVSEVYMGSECLGRGSGRSKK 214 >gi|298242449|ref|ZP_06966256.1| ribonuclease III [Ktedonobacter racemifer DSM 44963] gi|297555503|gb|EFH89367.1| ribonuclease III [Ktedonobacter racemifer DSM 44963] Length = 227 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 113/220 (51%), Gaps = 8/220 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNH 62 LE + F N +LL ALTH S + + S ERLEFLGD IL L+ + L+ Sbjct: 3 EELEAILDIQFHNPNLLTLALTHRSYIYEAAGEGRSSNERLEFLGDSILALISADFLYRT 62 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGEL+ LV ET + AR+++L++F+ + + + A E+L Sbjct: 63 FPDLAEGELTDARAVLVRTETLANFARDINLSNFLLMGKGEQHSGG--GQRVLASAFEAL 120 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YLD G++ TF+ K + + + +D K+ QE A A G+TP Y++ + Sbjct: 121 LGAIYLDQGLDAVQTFLLKRLEPLAHTIVRNRLFKDNKSLFQELAQAHDGITPSYRLVNQ 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H+ FT+ V + +G +K++AEQ AA + L Sbjct: 181 EGPSHNREFTIEVLLGEQVAGRGQGRNKQSAEQEAARQAL 220 >gi|225571976|ref|ZP_03780840.1| hypothetical protein RUMHYD_00270 [Blautia hydrogenotrophica DSM 10507] gi|225040509|gb|EEG50755.1| hypothetical protein RUMHYD_00270 [Blautia hydrogenotrophica DSM 10507] Length = 244 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 68/208 (32%), Positives = 105/208 (50%), Gaps = 5/208 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 LEK +GY F + +LL++A+THSS S+ ERLEFLGD +L ++ S L+ Sbjct: 12 LKELEKELGYQFRDINLLKQAVTHSSYSNEKNMGKLGCNERLEFLGDAVLEVISSEFLYQ 71 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +EGEL+ + S+V T + ARE+ L +++ + SI +D +E+ Sbjct: 72 KFPILQEGELTKKRASMVCEPTLALCAREIRLDNYLLLGHGEENTGGRKRDSIVSDALEA 131 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +I A+YLDGG+ A F+ K+ + D+KT LQE Y++ Sbjct: 132 VIGAIYLDGGLASAKEFILKHVLNDMEHK-QLFYDSKTILQEIVQEHGNNPVSYQLIRED 190 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDH+ FTV V + G +K+ Sbjct: 191 GPDHNKIFTVEVRVKQEVLGVGQGHTKK 218 >gi|167630237|ref|YP_001680736.1| ribonuclease iii [Heliobacterium modesticaldum Ice1] gi|226735377|sp|B0TGW4|RNC_HELMI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|167592977|gb|ABZ84725.1| ribonuclease iii [Heliobacterium modesticaldum Ice1] Length = 235 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 106/220 (48%), Gaps = 5/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L +RIG A + + LE ALTH S + E +RLEFLGD +LGL+I LF Sbjct: 9 AELARRIGIASEDLATLEMALTHPSFVYENPQAPPEHNQRLEFLGDAVLGLVIGEQLFVR 68 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + + EGELS R ++V + AR L L +++++ SI AD +E++ Sbjct: 69 YPTWTEGELSRRRAAVVCEANLADGARRLQLGAWLKLGRGEEASGGREKPSILADALEAV 128 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE-LQEWAHAKFGVTPEYKVTFRS 181 I A++L GGIE A F+ + + QEW Y + S Sbjct: 129 IGAIFLSGGIEAARRFIVDLFGDALANAQNLVSGDNKTAFQEWVQRTGPADIRYCIVDES 188 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GPDHD RF V ++G A G +K+ AEQ AA ++ Sbjct: 189 GPDHDKRFVAAVMVNGTVIADGQGRTKKEAEQQAAGRAMR 228 >gi|126733741|ref|ZP_01749488.1| ribonuclease III [Roseobacter sp. CCS2] gi|126716607|gb|EBA13471.1| ribonuclease III [Roseobacter sp. CCS2] Length = 226 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 131/223 (58%), Gaps = 1/223 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + + +R+G++F +L +A+THSSI +++ +RLEFLGDR+LGL+++ L Sbjct: 1 MKLSAELTAFSQRLGHSFDKPEILIRAVTHSSIVSPHRDDNQRLEFLGDRVLGLVMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 SA EG L+ R+N+LV E C++VAR++DL + +++ K ++ AD + Sbjct: 61 LKADPSAPEGLLAPRYNALVRREACAEVARQIDLGAVLKLGRSEMKSGGRRKEALLADAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+Y DGG + A + + W R RDAKT LQEWA A+ V P+Y Sbjct: 121 EAVIAAVYQDGGFDAARAAILRLWGDRIHNVAADARDAKTALQEWAQARGEVPPQYVEVA 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 R+GPDH P FT+ ++ Q SKR AEQ AA +LK+ Sbjct: 181 RTGPDHQPVFTIEARLASGPSEQATAGSKRQAEQAAATALLKK 223 >gi|148284924|ref|YP_001249014.1| ribonuclease III [Orientia tsutsugamushi str. Boryong] gi|146740363|emb|CAM80798.1| ribonuclease III [Orientia tsutsugamushi str. Boryong] Length = 251 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 75/218 (34%), Positives = 122/218 (55%), Gaps = 2/218 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L+ IGY F + LL +ALTH SI+ + Y ++Y+RLEFLGD IL L+IS LF +F Sbjct: 23 KLDALQSEIGYNFNSIDLLIEALTHPSINQYGYTKNYQRLEFLGDVILNLVISETLFKNF 82 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ LV E+ +A++++L +I ++++ K + + +E++I Sbjct: 83 SHYNEGKLAKSRAFLVCNESICLIAQKINLHKYIIMTANEEKCGGRSNKNNIENTMEAVI 142 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGGI V V+ WK + D K+ LQEW+ +K P Y ++ ++G Sbjct: 143 GAVYLDGGIHVIKDIVNSLWKVLIKDHELYLIADPKSALQEWSQSKNFGIPTYTLSSKTG 202 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H P F V+V++ L P G + + A++ AA +L Sbjct: 203 QSHSPLFEVMVKVGRLEPQYGKGTTIKTAQKNAAQLML 240 >gi|72161055|ref|YP_288712.1| ribonuclease III [Thermobifida fusca YX] gi|90101652|sp|Q47S78|RNC_THEFY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71914787|gb|AAZ54689.1| RNAse III [Thermobifida fusca YX] Length = 240 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 102/219 (46%), Gaps = 4/219 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ +G A +L +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 12 EFQETVGVEIA-PDILTRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPD 70 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ ++V+ + VAREL + ++R+ +SI AD +E+LI A Sbjct: 71 LSEGQLAKLRAAVVNMRALADVARELGIGRYVRLGRGEEATGGRDKSSILADTLEALIGA 130 Query: 126 LYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +YLD G++ A V + + A SG + A + V SGPD Sbjct: 131 VYLDRGLDEASELVHRLFDPLIARASGLGAGLDWKTSLQELTAAELLGVPEYVVEESGPD 190 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H F V ++G G SK+ AEQ AA K Sbjct: 191 HQKTFRATVRVAGQTYGSGEGRSKKEAEQQAAESAWKAI 229 >gi|154249761|ref|YP_001410586.1| ribonuclease III [Fervidobacterium nodosum Rt17-B1] gi|154153697|gb|ABS60929.1| Ribonuclease III [Fervidobacterium nodosum Rt17-B1] Length = 239 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 72/237 (30%), Positives = 117/237 (49%), Gaps = 17/237 (7%) Query: 1 MSALR------YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGD 48 M LR L++R+GY F N+ LL AL HSS ++ + ERLEFLGD Sbjct: 1 MDELRDRERRVLEELQRRLGYTFKNQMLLFNALCHSSYAYELNQIGRDVQDNERLEFLGD 60 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ L++ +L+ ++ + EG+++ ++ S E +++A E++L +I + K Sbjct: 61 AVVELVVCDILYRNYPDSSEGDMAKVKGAVASEEVLTELANEIELGKYIFLGKGEEKTGG 120 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAH 166 +SI AD E+L AA+YLDG +E + K+ + D KT LQE Sbjct: 121 RKRSSILADAFEALCAAIYLDGNLESVVKVFGEKLKREIEIFYTGQRIFDYKTALQEITQ 180 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F PEYK D + +F V + I G + G+ SK+ AE+ AA + + Sbjct: 181 ERFKELPEYKTVKN---DENGKFLVELYIQGKKISMGIGNSKKDAEKDAAKKAYEIL 234 >gi|227833427|ref|YP_002835134.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975] gi|262184417|ref|ZP_06043838.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975] gi|227454443|gb|ACP33196.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975] Length = 256 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 107/225 (47%), Gaps = 6/225 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 + ++ L K +G + LL ALTH S ++ + ERLEFLGD +LGL I+ L+ Sbjct: 19 EVDHAPLLKALGVEIND-ELLCLALTHRSFANENGHLPNNERLEFLGDAVLGLSIAAKLY 77 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + S E ++S S+VS S VARE+ + + + + SI AD E Sbjct: 78 EKYPSRPESDISKMRASIVSRYGLSDVAREIGVGEHVLLGKGEQSTGGRDKDSILADTTE 137 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+Y G EVA V K + + + D KT LQE P Y T Sbjct: 138 AILGAIYRQHGFEVARGVVLKLFAAKIDNAVVSGRHMDWKTTLQELCAELKAAMPVYSAT 197 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP+HD F V ++GL +G +K+ AEQ AA E + Sbjct: 198 S-TGPEHDQTFNAVATVAGLTVGRGTGHNKKLAEQQAAEEACQAL 241 >gi|268318202|ref|YP_003291921.1| ribonuclease III [Rhodothermus marinus DSM 4252] gi|262335736|gb|ACY49533.1| ribonuclease III [Rhodothermus marinus DSM 4252] Length = 260 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 75/212 (35%), Positives = 108/212 (50%), Gaps = 6/212 (2%) Query: 18 ANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 N +L E+ALTH S+ + S ERLEFLGD +LG +++ L+ HF EG L+ Sbjct: 38 RNAALYEQALTHRSVLRGQPDSHLHSNERLEFLGDAVLGFVVAAYLYEHFPDRNEGFLTR 97 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 LV+ E +Q AR L L + +R+S ++ + SI +D E+L+ A+YLD G+E Sbjct: 98 LRAKLVNREALAQAARRLGLGAHVRLSENMERAGGRDNDSILSDAFEALVGAIYLDLGLE 157 Query: 134 VAGTFVDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 A FV++ + + K+ L E+A A+ P Y+V GP H FTV Sbjct: 158 AARAFVERALLAPLDLEALARRPDNYKSLLLEFAQARGWPQPRYRVVAEEGPSHARTFTV 217 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 I +G SK+ AEQ AA E L R Sbjct: 218 EAWIGNRRLGRGTAGSKKQAEQQAAREALARL 249 >gi|159905527|ref|YP_001549189.1| ribonuclease III [Methanococcus maripaludis C6] gi|159887020|gb|ABX01957.1| Ribonuclease III [Methanococcus maripaludis C6] Length = 229 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L ++ F + ++ ++A HSS + + E ERLE+LGD +L L+IS Sbjct: 1 MK--NFEKLLSKLDIKFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLELIIS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF ++ EGE+S V A++L +++ + +I + Sbjct: 59 EYLF-KQENLSEGEMSKLRAKYVCESALFTYAKKLKFDNYVLLGKGELISKGYNKPAIVS 117 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 DV E+ IAA+YLD G+ A FV + +S K + + Y Sbjct: 118 DVFEAFIAAIYLDQGLNSAKKFVYNHILPIIEESSKELFIDYKTKLQEFPELINKSINYV 177 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G HD +F V V+ +G+ SK+ AE AA L + Sbjct: 178 NLEEAGEPHDKKFVVAVKQDRKILGKGIGKSKKEAEMKAAKNALLKL 224 >gi|158521513|ref|YP_001529383.1| ribonuclease III [Desulfococcus oleovorans Hxd3] gi|158510339|gb|ABW67306.1| Ribonuclease III [Desulfococcus oleovorans Hxd3] Length = 231 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 108/223 (48%), Gaps = 7/223 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59 + + LE+ + Y F + LL KAL HSS + + ERLEFLGD L L I LL Sbjct: 1 MNTTLLEQHLVYRFTDTGLLAKALRHSSYVNEQADPAMEDNERLEFLGDAALSLCIGHLL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F EG+LS LV+A + + R ++L ++ + + SI A+ V Sbjct: 61 MARFPELSEGDLSQTRAGLVNAGWLADIGRSMNLGEYVLLGKGEEQTNGRNKDSILANAV 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+L+ A+YLDGG + V ++ + R+ K+ LQE A G P Y++ Sbjct: 121 EALLGAIYLDGGFDAVMAVVRHKFENDIEALAALDMNRNYKSLLQELTQATDGKAPTYEI 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +GPDHD F V + A+G +K+ A+Q AA + L Sbjct: 181 IDETGPDHDKTFHCRVSAGDIQ-AEGSGKNKKTAQQDAAHKAL 222 >gi|92113755|ref|YP_573683.1| ribonuclease III [Chromohalobacter salexigens DSM 3043] gi|91796845|gb|ABE58984.1| RNAse III [Chromohalobacter salexigens DSM 3043] Length = 226 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 113/220 (51%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L +RIGY F + S LE ALTH S ++ ERLEFLGD I+ +I LF F A Sbjct: 2 QALSRRIGYQFRDTSRLELALTHRSYG---GKNNERLEFLGDSIVNFVIGEALFQRFPQA 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS LV +T +++ARE +L +R+ S K SI AD VE+LI A+ Sbjct: 59 REGQLSRLRARLVKGQTLAELAREFELGECLRLGSGEMKSGGYRRDSILADGVEALIGAI 118 Query: 127 YLDGGIE--VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G++ A + A+ ++D KT LQE+ ++ P Y+V G Sbjct: 119 YLDAGMDVAKARVLSWYATRLEAIDLQDNQKDPKTRLQEFLQSRQAALPRYEVVSVEGEA 178 Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223 H FT+ + L G+ S+R AEQ AA + L+ Sbjct: 179 HAQVFTIECHVEMLEDHTLGVGSSRRHAEQQAAEKALETL 218 >gi|303248688|ref|ZP_07334942.1| ribonuclease III [Desulfovibrio fructosovorans JJ] gi|302489944|gb|EFL49870.1| ribonuclease III [Desulfovibrio fructosovorans JJ] Length = 233 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 113/222 (50%), Gaps = 5/222 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63 + LE +G+ F LL ALTHSS ++ E ERLEFLGD +L L +S LF F Sbjct: 5 TALENALGHVFVRPELLTTALTHSSYANERGEAAKHNERLEFLGDAVLELSVSEELFARF 64 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGEL++ + LV+ + + +A L L I + S+ +DV E++I Sbjct: 65 PEAPEGELTLLRSQLVNESSLAAMALRLSLEDHILLGKGEENQGGRTRPSLLSDVFEAVI 124 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AL+LDGG VA +FV+ + + RD K+ LQE+ P Y + Sbjct: 125 GALFLDGGYGVAKSFVNATFAEVWPVRSVAPKTRDYKSRLQEYTQKVHKARPVYTLLDSE 184 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP+HD RFTV +E+ M+ S + AEQ+AA L++ Sbjct: 185 GPEHDKRFTVRLELPDGHALTAMEKSVKKAEQMAARLALEKI 226 >gi|330684635|gb|EGG96340.1| ribonuclease III [Staphylococcus epidermidis VCU121] Length = 235 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 5/212 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ + N L ++A +HSS + + + ERLEFLGD +L L +S LF+ E Sbjct: 24 LGFEYNNIELYQQAFSHSSFINDFNMDRLDHNERLEFLGDAVLELTVSRYLFDKHPDLPE 83 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ ++V + A ++ L I + K S+ +D E+ + ALYL Sbjct: 84 GNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYL 143 Query: 129 DGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 D G+++ F +K D KT+ QE+ H + Y++ GP H Sbjct: 144 DQGLDIVWDFAEKIIFPYVEDDELDGVVDFKTQFQEFVHRQNKGDVTYRLIKEEGPAHHR 203 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 FT V + A A+G +K+ +EQ AA Sbjct: 204 LFTSEVILEKQAVAEGQGKTKKESEQKAAERA 235 >gi|325830746|ref|ZP_08164130.1| ribonuclease III [Eggerthella sp. HGA1] gi|325487153|gb|EGC89596.1| ribonuclease III [Eggerthella sp. HGA1] Length = 304 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 107/222 (48%), Gaps = 2/222 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 + + ++ +GY FA+ LL A+TH S + + SYERLEFLGD ILG +++T+ F+ Sbjct: 33 KLAVAQEILGYRFADEQLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVATIAFDR 92 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ +LVS + S VA L A I S + S +V E++ Sbjct: 93 FHDLDEGGLTRIKVALVSGASLSDVAERLGFADVIVFGSSETGTGRRGLHSALENVYEAV 152 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +AAL+LDGGIE A FV R + + + G+TP YK+ G Sbjct: 153 VAALFLDGGIEAAEGFVRATLIPRMSADMAREPENPKSALQEKLQEDGITPTYKLVETQG 212 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P HD F V A+G +K+ AE AA L R G Sbjct: 213 PPHDRTFVAQVFAGSQGLARGTGRTKKEAESQAAKSTLARLG 254 >gi|257791118|ref|YP_003181724.1| ribonuclease III [Eggerthella lenta DSM 2243] gi|317488154|ref|ZP_07946728.1| ribonuclease III [Eggerthella sp. 1_3_56FAA] gi|257475015|gb|ACV55335.1| ribonuclease III [Eggerthella lenta DSM 2243] gi|316912741|gb|EFV34276.1| ribonuclease III [Eggerthella sp. 1_3_56FAA] Length = 281 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 107/222 (48%), Gaps = 2/222 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 + + ++ +GY FA+ LL A+TH S + + SYERLEFLGD ILG +++T+ F+ Sbjct: 10 KLAVAQEILGYRFADEQLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVATIAFDR 69 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ +LVS + S VA L A I S + S +V E++ Sbjct: 70 FHDLDEGGLTRIKVALVSGASLSDVAERLGFADVIVFGSSETGTGRRGLHSALENVYEAV 129 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +AAL+LDGGIE A FV R + + + G+TP YK+ G Sbjct: 130 VAALFLDGGIEAAEGFVRATLIPRMSADMAREPENPKSALQEKLQEDGITPTYKLVETQG 189 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P HD F V A+G +K+ AE AA L R G Sbjct: 190 PPHDRTFVAQVFAGSQGLARGTGRTKKEAESQAAKSTLARLG 231 >gi|229098318|ref|ZP_04229265.1| Ribonuclease 3 [Bacillus cereus Rock3-29] gi|229104411|ref|ZP_04235080.1| Ribonuclease 3 [Bacillus cereus Rock3-28] gi|229117335|ref|ZP_04246713.1| Ribonuclease 3 [Bacillus cereus Rock1-3] gi|228666235|gb|EEL21699.1| Ribonuclease 3 [Bacillus cereus Rock1-3] gi|228679109|gb|EEL33317.1| Ribonuclease 3 [Bacillus cereus Rock3-28] gi|228685216|gb|EEL39147.1| Ribonuclease 3 [Bacillus cereus Rock3-29] Length = 245 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEKIGITFTDEKLLTQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|269926036|ref|YP_003322659.1| ribonuclease III [Thermobaculum terrenum ATCC BAA-798] gi|269789696|gb|ACZ41837.1| ribonuclease III [Thermobaculum terrenum ATCC BAA-798] Length = 234 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 5/224 (2%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIS 56 MS+ + TL++R+GY F N LL+ ALTH S ++ E+ ER EFLGD IL ++ Sbjct: 1 MSSSDSFITLQERLGYKFRNIELLKTALTHRSFANESLEKTETNERFEFLGDSILAFVVG 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F A EG L+ LV + + ++R L + FI + R S S+ A Sbjct: 61 EALFRLFPRASEGILTRARAHLVGRKNLADISRTLGIGDFILLGKGARLSGSSQSESVLA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LIAA+YLD +E + V + + + + + + + Sbjct: 121 DALEALIAAVYLDSDLETCRSVVFRLLRLSKEEIEHWLDVKDNKTRLQELSHRLYRTNPI 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 T + P F V V+++ AQG SK AEQ AA + L Sbjct: 181 YTVIAAPPVRDNFIVQVKVND-VSAQGEGRSKSEAEQEAARKAL 223 >gi|90424139|ref|YP_532509.1| ribonuclease III [Rhodopseudomonas palustris BisB18] gi|90106153|gb|ABD88190.1| RNAse III [Rhodopseudomonas palustris BisB18] Length = 272 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 102/217 (47%), Positives = 140/217 (64%), Gaps = 3/217 (1%) Query: 12 RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 RIG+AFA+ +LL A TH S + + +SY+RLEFLGD +LGL++S +L+ F +A E Sbjct: 49 RIGHAFADPALLATAFTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLYRAFPNADE 108 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS R LV E C+ VAR LDL I++ + S+ D+ E++I A++L Sbjct: 109 GELSKRLADLVRKEACADVARSLDLLDGIKLGTVGAGAGARLRKSVLGDICEAVIGAIFL 168 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG A +FV + W +R K + RDAKT LQEWA K TP Y+ R+GP HDP+ Sbjct: 169 DGGYPAAESFVQRNWLERMRKPVRPLRDAKTILQEWAQGKGLPTPVYREVERTGPHHDPQ 228 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F V V++ GLAPA+G+ SKRAAE+VAA+ +L REG+ Sbjct: 229 FRVAVDLPGLAPAEGIGGSKRAAEKVAASVMLAREGV 265 >gi|228940937|ref|ZP_04103496.1| Ribonuclease 3 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228966797|ref|ZP_04127841.1| Ribonuclease 3 [Bacillus thuringiensis serovar sotto str. T04001] gi|228792896|gb|EEM40454.1| Ribonuclease 3 [Bacillus thuringiensis serovar sotto str. T04001] gi|228818773|gb|EEM64839.1| Ribonuclease 3 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 225 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 5/206 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64 +++IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF + Sbjct: 2 FQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYP 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGEL+ ++V + + A EL S + + ++ ADV E+ I Sbjct: 62 TMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIG 121 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ALYLD G+E F+ + + + D K++LQE EY++ GP Sbjct: 122 ALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKGP 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 H+ F V ++ +A G SK+ Sbjct: 182 AHNREFVSRVTLNNVALGLGSGKSKK 207 >gi|296331168|ref|ZP_06873642.1| ribonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|296151812|gb|EFG92687.1| ribonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633] Length = 213 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 98/204 (48%), Gaps = 5/204 (2%) Query: 25 KALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +A THSS + ++ E ERLEFLGD +L L IS LF + + EG+L+ ++V Sbjct: 3 QAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVC 62 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + +A EL + + ++ ADV E+ I ALYLD G+E +F+ Sbjct: 63 EPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLK 122 Query: 141 KYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 Y + D K++LQE+ + EYK+T GP H+ F +V + G Sbjct: 123 VYVFPKINDGAFSHVMDFKSQLQEYVQRDGKGSLEYKITNEKGPAHNREFEAIVSLKGEP 182 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ AEQ AA E L + Sbjct: 183 LGVGNGRSKKEAEQHAAQEALAKL 206 >gi|90021888|ref|YP_527715.1| RNAse III [Saccharophagus degradans 2-40] gi|89951488|gb|ABD81503.1| RNAse III [Saccharophagus degradans 2-40] Length = 226 Score = 131 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 116/228 (50%), Gaps = 10/228 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L R+GY F ++SLL+ AL+H S ++ ER+EFLGD +L +I+ LF Sbjct: 1 MNQND--RLVARLGYTFKDKSLLKLALSHRSYGK---QNNERVEFLGDSLLNFIIAEALF 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F +AKEG+L+ +LV ET +++ARE L F+ + K SI AD VE Sbjct: 56 AKFPTAKEGQLTQLRANLVKGETLAEIAREFGLGDFLLLGEGELKSGGFRRASILADAVE 115 Query: 121 SLIAALYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 +LI A+YLD + + ++ +DAKT LQE+ + P Y Sbjct: 116 ALIGAIYLDSNSSMPTCRERVLAWYATRLDKVELKATAKDAKTLLQEYLQERKMPLPTYT 175 Query: 177 VTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 V G H +FTV I+G P + SKR AE++AA ++L + Sbjct: 176 VLAEGGEAHSRQFTVECTITGKSKPCSAVGNSKRIAEKLAAEKMLSQL 223 >gi|88797948|ref|ZP_01113535.1| ribonuclease III [Reinekea sp. MED297] gi|88779145|gb|EAR10333.1| ribonuclease III [Reinekea sp. MED297] Length = 219 Score = 131 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 84/217 (38%), Positives = 123/217 (56%), Gaps = 6/217 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 K IGY F + SLLE+ALTH S + +++ ERLEFLGD IL I+ L++ F +AKEG+ Sbjct: 3 KAIGYQFESESLLEQALTHRSYA---RKNNERLEFLGDAILNCTIAQALYHQFPNAKEGQ 59 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 +S LV +T +++ RE +L F+R+ S K SI AD VE++I A+ LD Sbjct: 60 MSRLRAHLVKGDTLAEIGREFELGEFLRLGSGELKSGGFRRDSILADAVEAIIGAISLDA 119 Query: 131 GIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 + A + ++++R L + +D+KT LQE+ A+ PEY+V +G H Sbjct: 120 DLGKAQQVLLSWYEERLSNLDLKENIKDSKTRLQEFLQARRLPLPEYQVKTITGEAHQQE 179 Query: 189 FTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREG 224 FTV ++ L P G+ S+R AEQ AA LK G Sbjct: 180 FTVHCQVESLETPMVGVGSSRRMAEQEAANAALKALG 216 >gi|110834492|ref|YP_693351.1| ribonuclease III [Alcanivorax borkumensis SK2] gi|123345468|sp|Q0VP19|RNC_ALCBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|110647603|emb|CAL17079.1| ribonuclease III [Alcanivorax borkumensis SK2] Length = 228 Score = 131 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 112/224 (50%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + L R+GY F + SLLE ALTH S+S +YERLEFLGD LG +IS LF Sbjct: 1 MNG-DLNRLMARLGYQFQDLSLLELALTHRSVSRH--RNYERLEFLGDAQLGQIISVALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EG+L+ SLV +T + VAREL L ++ + K SI AD +E Sbjct: 58 EQFPEAAEGQLTRMRASLVRGQTLALVARELGLGEYLVLGGGELKSGGFRRDSILADALE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178 S+I A+ LDGG V ++ R ++DAKT LQEW A+ P Y+VT Sbjct: 118 SIIGAMLLDGGEPRCREVVLAWFAPRLDAISPQSAQKDAKTRLQEWLQARKFELPTYEVT 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLK 221 G F V + S+R AEQ AA+ L+ Sbjct: 178 QVEGLAPKQTFDVQCSLDNVQQIFIAQGASRRKAEQEAASLALE 221 >gi|226322326|ref|ZP_03797844.1| hypothetical protein COPCOM_00087 [Coprococcus comes ATCC 27758] gi|225209248|gb|EEG91602.1| hypothetical protein COPCOM_00087 [Coprococcus comes ATCC 27758] Length = 252 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 75/213 (35%), Positives = 105/213 (49%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 MS LE++IGY F + LL A+THSS + + ERLEFLGD +L L+ S Sbjct: 22 MSR-NVKELEEKIGYNFKDSHLLRHAVTHSSYVNEKHMKKADCNERLEFLGDAVLELISS 80 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EGEL+ S+V + + AR+L+L S++ + F SI + Sbjct: 81 EYLFFENQTMPEGELTKLRASMVCEKALAFCARDLELGSYLLLGKGEDATGGRFRESITS 140 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LI A+YLDGG A F+ KY F D+KT LQE Y+ Sbjct: 141 DALEALIGAIYLDGGFANAKEFILKYILNDLEGKRLFY-DSKTILQEMVQGGQEKGIVYQ 199 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + GPDH+ F V I G A G+ +K+ Sbjct: 200 LVGEEGPDHNKSFRVEAVIGGEAFGCGIGRTKK 232 >gi|189184858|ref|YP_001938643.1| ribonuclease III [Orientia tsutsugamushi str. Ikeda] gi|189181629|dbj|BAG41409.1| ribonuclease III [Orientia tsutsugamushi str. Ikeda] Length = 246 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 76/218 (34%), Positives = 123/218 (56%), Gaps = 2/218 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63 + TL+ IGY F + LL +ALTH SI+ + Y ++Y+RLEFLGD IL L+IS LF +F Sbjct: 18 KLDTLQSEIGYNFNSIDLLIEALTHPSINQYGYTKNYQRLEFLGDVILNLVISETLFKNF 77 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ LV E+ +A++++L +I ++++ K + + +E++I Sbjct: 78 SHYNEGKLAKSRAFLVCNESICLIAQKINLHKYIIMTANEEKCGGRSNKNNIENTMEAVI 137 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLDGGI V V+ WK + D K+ LQEW+ +K P Y ++ ++G Sbjct: 138 GAVYLDGGIHVIKDIVNSLWKVLIKDHELYLIADPKSALQEWSQSKNFGIPTYTLSSKTG 197 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H P F V+V++ L P G + + A++ AA +L Sbjct: 198 QSHSPLFEVMVKVGRLEPQYGKGTTIKTAQKNAAQLML 235 >gi|294784571|ref|ZP_06749860.1| ribonuclease III [Fusobacterium sp. 3_1_27] gi|294487787|gb|EFG35146.1| ribonuclease III [Fusobacterium sp. 3_1_27] Length = 234 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 117/231 (50%), Gaps = 9/231 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ Sbjct: 1 MK--NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ ++ +A EG ++ +VS ++++R++ + F+ +S SI A Sbjct: 59 EYLYKNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+++ A+Y+D ++ A F + KQ + D K+ LQE+ +F P Sbjct: 119 DSFEAILGAVYMDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 Y++ GPDH F + V + + + +K+ AEQ++A + + G+ Sbjct: 179 YELIAERGPDHMKEFEIQVIVGNYKE-KAVARNKKKAEQLSAKALCIKLGV 228 >gi|254428849|ref|ZP_05042556.1| ribonuclease III [Alcanivorax sp. DG881] gi|196195018|gb|EDX89977.1| ribonuclease III [Alcanivorax sp. DG881] Length = 228 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 112/224 (50%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + L R+GY F + SLLE ALTH S+S +YERLEFLGD LG +IS LF Sbjct: 1 MNG-DLNRLMARLGYQFQDISLLELALTHRSVSRH--RNYERLEFLGDAQLGQIISVALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EG+L+ SLV +T + VAREL L ++ + K SI AD +E Sbjct: 58 EQFPEAAEGQLTRMRASLVRGQTLALVARELGLGEYLVLGGGELKSGGFRRDSILADALE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178 S+I A+ LDGG V ++ R ++DAKT LQEW A+ P Y+VT Sbjct: 118 SIIGAMLLDGGESRCREVVLCWFAPRLDAISPQSAQKDAKTRLQEWLQARKFELPTYEVT 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLK 221 G F V + S+R AEQ AA+ L+ Sbjct: 178 QVEGLAPKQTFDVQCSLDQVQQIFIAQGASRRKAEQEAASLALE 221 >gi|289550987|ref|YP_003471891.1| Ribonuclease III [Staphylococcus lugdunensis HKU09-01] gi|315658482|ref|ZP_07911354.1| ribonuclease III [Staphylococcus lugdunensis M23590] gi|289180519|gb|ADC87764.1| Ribonuclease III [Staphylococcus lugdunensis HKU09-01] gi|315496811|gb|EFU85134.1| ribonuclease III [Staphylococcus lugdunensis M23590] Length = 243 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 99/227 (43%), Gaps = 8/227 (3%) Query: 1 MSALRYSTLEKR---IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGL 53 M E++ +G F N L ++A +HSS + + E ERLEFLGD +L + Sbjct: 9 MIKDFRQRFEQKMNELGIHFDNIKLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLEV 68 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +S LF+ + EG L+ ++V + A ++ L I + K S Sbjct: 69 TVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIQLNQLILLGKGEEKTGGRTRPS 128 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVT 172 + +D E+ + ALYLD G+ F +K D KT+ QE+ H++ Sbjct: 129 LISDAFEAFVGALYLDQGLGAVWHFAEKVIFPYVEDDELIGVVDFKTQFQEFVHSQNKGD 188 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 Y++ GP H FT V + A A G +K+ +EQ AA Sbjct: 189 VMYRLVKEEGPAHHRLFTSEVILEQQAIAHGQGKTKKESEQKAAERA 235 >gi|303326944|ref|ZP_07357386.1| ribonuclease III [Desulfovibrio sp. 3_1_syn3] gi|302862932|gb|EFL85864.1| ribonuclease III [Desulfovibrio sp. 3_1_syn3] Length = 253 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 109/221 (49%), Gaps = 5/221 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFD 64 LE+++G+ FA LL+ ALTHSS ++ Y ER EFLGD +L L +S LF F Sbjct: 18 ALEEKLGHVFARPELLDLALTHSSWANEYSGGQHHNERQEFLGDAVLELCVSWELFRRFP 77 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A+EGEL+ LVS + ++ ARE L S +++ + S+ +DV+E+++A Sbjct: 78 EAREGELTKLRARLVSTVSLAERAREFGLDSLLKLGKGEERQGGRSRDSVLSDVLEAVLA 137 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+Y DGG A V + ++ R+D KT LQE A F P Y G Sbjct: 138 AVYEDGGFTAAQAAVAHIFAPHWPRAAGEPQRKDYKTRLQEVAQQLFRERPVYVQLASHG 197 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P+H F V + + S + AEQ AA + L Sbjct: 198 PEHAKIFEVSLHLPDGREFTASGTSCKKAEQEAARQALNSL 238 >gi|153208682|ref|ZP_01946929.1| ribonuclease III [Coxiella burnetii 'MSU Goat Q177'] gi|212219222|ref|YP_002306009.1| ribonuclease III [Coxiella burnetii CbuK_Q154] gi|226741367|sp|B6J4J9|RNC_COXB1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|120575793|gb|EAX32417.1| ribonuclease III [Coxiella burnetii 'MSU Goat Q177'] gi|212013484|gb|ACJ20864.1| ribonuclease III [Coxiella burnetii CbuK_Q154] Length = 233 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 115/225 (51%), Gaps = 7/225 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + L +R+G+ F N LL+ ALTH S S ++ ERLEFLGD +LG +I++ L+ Sbjct: 1 MN--HLNKLMERLGHQFNNLELLKIALTHRS---SGADNNERLEFLGDSVLGFIIASELY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 A+EG+LS S+V+ + +Q++ +L + ++++ +K SI AD +E Sbjct: 56 QRRPQAREGDLSRMRASMVNGDELAQMSIKLGINEYLQLGVGEQKSGGKRRRSILADALE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179 +++ A+Y+D G+E V ++ +R K + L + + Sbjct: 116 AIVGAIYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVK 175 Query: 180 RSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223 +G H FTV + GL +G++ ++R AEQ+AA L+ Sbjct: 176 ITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLELL 220 >gi|71281241|ref|YP_270777.1| ribonuclease III [Colwellia psychrerythraea 34H] gi|90101619|sp|Q47WP5|RNC_COLP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71146981|gb|AAZ27454.1| ribonuclease III [Colwellia psychrerythraea 34H] Length = 266 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 114/224 (50%), Gaps = 10/224 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + + L K++GY F LL +ALTH S ERLEFLGD ILG +I+ L++ Sbjct: 4 NPHNLARLTKKLGYEFNEPLLLVQALTHRSA---KGAHNERLEFLGDSILGFVIAEALYD 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+L+ +SLV T ++VAR+ +L + + K SI D +E+ Sbjct: 61 KFPKHDEGDLTRMRSSLVKGVTLAEVARDFNLGECLILGPGELKSGGHHRESILEDAIEA 120 Query: 122 LIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A+YLD IE + +K G ++D KT LQE+ + P Y+V Sbjct: 121 IIGAVYLDSNIECCKALILSWFERRLMVIKPGNEQKDPKTRLQEFLQGRKIPLPTYEVID 180 Query: 180 RSGPDHDPRFTVVVE---ISGLAPAQGMDCSKRAAEQVAAAEVL 220 +G H+ FTV + IS + A+G S+R AEQ AA ++L Sbjct: 181 TTGQSHNQEFTVRCQTSVISEVVIAKGT--SRRKAEQEAAQQIL 222 >gi|227550768|ref|ZP_03980817.1| ribonuclease III [Enterococcus faecium TX1330] gi|314937654|ref|ZP_07844980.1| ribonuclease III [Enterococcus faecium TX0133a04] gi|314942847|ref|ZP_07849660.1| ribonuclease III [Enterococcus faecium TX0133C] gi|314948017|ref|ZP_07851421.1| ribonuclease III [Enterococcus faecium TX0082] gi|314950935|ref|ZP_07854004.1| ribonuclease III [Enterococcus faecium TX0133A] gi|314991417|ref|ZP_07856894.1| ribonuclease III [Enterococcus faecium TX0133B] gi|314995062|ref|ZP_07860182.1| ribonuclease III [Enterococcus faecium TX0133a01] gi|227180086|gb|EEI61058.1| ribonuclease III [Enterococcus faecium TX1330] gi|313590788|gb|EFR69633.1| ribonuclease III [Enterococcus faecium TX0133a01] gi|313593897|gb|EFR72742.1| ribonuclease III [Enterococcus faecium TX0133B] gi|313596944|gb|EFR75789.1| ribonuclease III [Enterococcus faecium TX0133A] gi|313598319|gb|EFR77164.1| ribonuclease III [Enterococcus faecium TX0133C] gi|313643031|gb|EFS07611.1| ribonuclease III [Enterococcus faecium TX0133a04] gi|313645615|gb|EFS10195.1| ribonuclease III [Enterococcus faecium TX0082] Length = 231 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 5/214 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M L++ F + +LLE+A THSS + ++ ERLEFLGD +L L++S Sbjct: 4 MDNQLTKELKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVS 63 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EG+L+ ++V ++ S+ A+E ++ + ++ Sbjct: 64 QYLFRLYPHLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLC 123 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD G + F++K + D KT+LQE V+ EY Sbjct: 124 DLFEAFLGALYLDQGFDTTHAFIEKVIFPKVKAGAFSHEMDHKTKLQEVLQKSGDVSIEY 183 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 ++ GP H+ F + V + G SK+ Sbjct: 184 RLINEEGPAHERVFWIEVYVDDQLIGTGQGKSKK 217 >gi|254302541|ref|ZP_04969899.1| ribonuclease III [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322733|gb|EDK87983.1| ribonuclease III [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 234 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 116/231 (50%), Gaps = 9/231 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ Sbjct: 1 MK--NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ ++ +A EG ++ +VS ++++R++ + F+ +S SI A Sbjct: 59 EYLYKNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILA 118 Query: 117 DVVESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 D E+++ A+Y+D +E A F ++ + D K+ LQE+ +F P Sbjct: 119 DSFEAILGAVYIDSNLEEARVFALSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 Y++ GPDH F + V + + + +K+ AEQ++A + + G+ Sbjct: 179 YELVAERGPDHMKEFEIQVIVGNYKE-KAVARNKKKAEQLSAKALCIKLGV 228 >gi|83753776|pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.1- Angstrom Resolution gi|83753777|pdb|1YZ9|B Chain B, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.1- Angstrom Resolution Length = 221 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 115/223 (51%), Gaps = 14/223 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LEK++GY F ++SLLEKALTH S S +E YE LEFLGD ++ I LL + + Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG LS L+S E + +A++L+L FIR+ +I DV ++L AA Sbjct: 62 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFQALWAA 115 Query: 126 LYLDGGIEVAGTFVDKYWKQRALK-----SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +Y+D G + T Y + G+ ++D KT LQE ++ PEY++ Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V +I G SK+ AEQ AA E++K Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIKLL 217 >gi|154707005|ref|YP_001423899.1| ribonuclease III [Coxiella burnetii Dugway 5J108-111] gi|165919331|ref|ZP_02219417.1| ribonuclease III [Coxiella burnetii RSA 334] gi|189043305|sp|A9KFA0|RNC_COXBN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|154356291|gb|ABS77753.1| ribonuclease III [Coxiella burnetii Dugway 5J108-111] gi|165916991|gb|EDR35595.1| ribonuclease III [Coxiella burnetii RSA 334] Length = 233 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 115/225 (51%), Gaps = 7/225 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + L +R+G+ F N LL+ ALTH S S ++ ERLEFLGD +LG +I++ L+ Sbjct: 1 MN--HLNKLMERLGHQFNNLELLKIALTHRS---SGADNNERLEFLGDSVLGFIIASELY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 A+EG+LS S+V+ + +Q++ +L + ++++ +K SI AD +E Sbjct: 56 QRRPQAREGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179 +++ A+Y+D G+E V ++ +R K + L + + Sbjct: 116 AIVGAIYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVK 175 Query: 180 RSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223 +G H FTV + GL +G++ ++R AEQ+AA L+ Sbjct: 176 ITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLELL 220 >gi|3176883|gb|AAD02939.1| RNase III [Bradyrhizobium japonicum] Length = 231 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 98/225 (43%), Positives = 142/225 (63%), Gaps = 3/225 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60 +R L + G+ FA+ +LL + +TH S S + +SY+RLEFLGD +LGL++S +L+ Sbjct: 1 MRTRRLRRASGHTFADPNLLMQGITHVSALKSGRKRGDSYQRLEFLGDHVLGLVVSDMLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F +A EGELS R LV E+C+ VA+ L L I++ S S+ D+ E Sbjct: 61 HAFPNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSADARLRKSVLGDICE 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++I A++LDGG A FV + W +R K + RD KT LQEWA K TP Y+ R Sbjct: 121 AVIGAIFLDGGHAAAAEFVKRNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVER 180 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +GP HDP+F V V++ GLAPA+G+ SKRAAE+VAA+ +++REG+ Sbjct: 181 TGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASVMIEREGV 225 >gi|56698030|ref|YP_168401.1| ribonuclease III [Ruegeria pomeroyi DSS-3] gi|81349082|sp|Q5LNK5|RNC_SILPO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56679767|gb|AAV96433.1| ribonuclease III [Ruegeria pomeroyi DSS-3] Length = 225 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 90/217 (41%), Positives = 129/217 (59%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 E R+GY+F LL +ALTH SIS S ++ +RLEFLGDR+LGL+++T L A Sbjct: 8 KAFEARLGYSFERPELLVRALTHGSISSSTRQDNQRLEFLGDRVLGLVMATALLEADKDA 67 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ RFN+LV ETC++VARE DL + +++ ++ D +E++IAA+ Sbjct: 68 TEGQLAPRFNALVRKETCAEVAREADLGAVLKLGRSEMMSGGRRKLALLGDAMEAVIAAV 127 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y DGG A + + W R + RDAKT LQEWA A+ P Y++ RSGPDH Sbjct: 128 YRDGGFAAAEAVILRLWGARVHQVEADARDAKTALQEWAQARGQTPPRYELVKRSGPDHA 187 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P FT++ E++ A+ +KR AEQ AA ++L Sbjct: 188 PVFTILAELADGRRAEATAGAKRQAEQAAARKLLDSL 224 >gi|212212136|ref|YP_002303072.1| ribonuclease III [Coxiella burnetii CbuG_Q212] gi|226741368|sp|B6IYZ9|RNC_COXB2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|212010546|gb|ACJ17927.1| ribonuclease III [Coxiella burnetii CbuG_Q212] Length = 233 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 7/225 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + L +R+G+ F N LL+ ALTH S S ++ ERLEFLGD +LG +I++ L+ Sbjct: 1 MN--HLNKLMERLGHQFNNLELLKIALTHRS---SGADNNERLEFLGDSVLGFIIASELY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 A+EG+LS S+V+ + +Q++ +L + ++++ +K SI AD +E Sbjct: 56 QRRPQAREGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179 +++ ++Y+D G+E V ++ +R K + L + + Sbjct: 116 AIVGSIYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVK 175 Query: 180 RSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223 +G H FTV + GL +G++ ++R AEQ+AA L+ Sbjct: 176 ITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLELL 220 >gi|269797766|ref|YP_003311666.1| ribonuclease III [Veillonella parvula DSM 2008] gi|282849040|ref|ZP_06258429.1| ribonuclease III [Veillonella parvula ATCC 17745] gi|294791672|ref|ZP_06756820.1| ribonuclease III [Veillonella sp. 6_1_27] gi|294793530|ref|ZP_06758667.1| ribonuclease III [Veillonella sp. 3_1_44] gi|269094395|gb|ACZ24386.1| ribonuclease III [Veillonella parvula DSM 2008] gi|282581315|gb|EFB86709.1| ribonuclease III [Veillonella parvula ATCC 17745] gi|294455100|gb|EFG23472.1| ribonuclease III [Veillonella sp. 3_1_44] gi|294456902|gb|EFG25264.1| ribonuclease III [Veillonella sp. 6_1_27] Length = 246 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 110/224 (49%), Gaps = 6/224 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 L R+ ++ S+++ A TH+S ++ ++ +RLEFLGD +L L+I LF Sbjct: 19 LHELVARLDIPVSDISIIDCAFTHTSYANEHKSKHIHHNQRLEFLGDAVLDLIIGEYLFK 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + V ++ + V+R L L ++ + R + SI AD ES Sbjct: 79 TYPDMAEGNLTKIKAATVCEDSLASVSRSLQLGQYLLLGHGERASGGNDRNSILADTFES 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+Y+ + A FV K+ ++ GK +D KT LQE+ Y + Sbjct: 139 LIGAIYISTDYQTAMAFVLKHLTTYIMQALEGKRGKDYKTLLQEYVQRDGDKHIVYHLLS 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH F + VEI+G+ G SK+ AEQ AA L++ Sbjct: 199 ESGPDHAKTFHMEVEINGVTYEAGSGKSKKIAEQHAAQLTLEKL 242 >gi|292490849|ref|YP_003526288.1| ribonuclease III [Nitrosococcus halophilus Nc4] gi|291579444|gb|ADE13901.1| ribonuclease III [Nitrosococcus halophilus Nc4] Length = 231 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 115/221 (52%), Gaps = 6/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L ++GY F +LL A+TH S + + ERLEFLGD IL LI+ L+ F Sbjct: 5 LRRLCGKLGYRFTEPALLRCAITHRSAAKE---NNERLEFLGDSILNFLIAEFLYIRFPK 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EG+LS +LV ET +++AREL++ + + K TSI AD E++I A Sbjct: 62 AQEGKLSRLRATLVKGETLAELARELEIGDHLILGPGELKSGGYRRTSILADAFEAVIGA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGG+E V ++ R +D KT LQE+ A+ P+Y+V+ G Sbjct: 122 VYLDGGLEACRKLVASLYEDRLEALTSEVLLKDPKTRLQEYLQARQLPLPDYRVSAVRGE 181 Query: 184 DHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223 HD F V I+ P+ G S+R AEQ AA + L+ Sbjct: 182 AHDQVFQVECIINDTFPSVVGTGRSRRKAEQDAATQALELL 222 >gi|319892231|ref|YP_004149106.1| Ribonuclease III [Staphylococcus pseudintermedius HKU10-03] gi|317161927|gb|ADV05470.1| Ribonuclease III [Staphylococcus pseudintermedius HKU10-03] gi|323464672|gb|ADX76825.1| ribonuclease III [Staphylococcus pseudintermedius ED99] Length = 243 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 66/220 (30%), Positives = 106/220 (48%), Gaps = 5/220 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ K + + N SL ++A +HSS + + E ERLEFLGD +L L +S LF Sbjct: 16 NFAKKMKALNLTYDNMSLYQQAFSHSSFINDFNMDRTEHNERLEFLGDAVLELTVSRYLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EGEL+ ++V + A+ ++L I + K S+ ADV E Sbjct: 76 DAFPKLPEGELTKMRANIVCEPSLVVFAQHINLMPLILLGKGEEKTGGRTRPSLVADVFE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + ALYLD G+E F + D KT+ QE+ H + +Y+V Sbjct: 136 AFVGALYLDQGLEAVWQFAEAVIFPHVKGRQLIGVVDFKTKFQEYVHQNYLGVIKYRVAK 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GP H+ FT + ++G A ++G +K+ +EQ AA + Sbjct: 196 EEGPAHNKTFTSEILLNGEAVSRGEGRTKKESEQKAAEQA 235 >gi|223986082|ref|ZP_03636108.1| hypothetical protein HOLDEFILI_03416 [Holdemania filiformis DSM 12042] gi|223961955|gb|EEF66441.1| hypothetical protein HOLDEFILI_03416 [Holdemania filiformis DSM 12042] Length = 247 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 67/216 (31%), Positives = 104/216 (48%), Gaps = 6/216 (2%) Query: 4 LRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59 ++ LE R G + L+E+A HSS + +++ ERLEF+GD +L L +S L Sbjct: 1 MKICEWLEAR-GIHCKDSRLIEQAFVHSSYVNEHKQLKHDNERLEFMGDAVLQLWVSDKL 59 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F EG ++ LV E + AR+L L SF+++ K SI AD+ Sbjct: 60 FRLDPPLDEGHMTTFRAQLVCEEALAIYARQLQLNSFLKLGVGEEKTGGRERDSIIADMF 119 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+++ ALY D G+E + + + D KT+LQE+ + T Y+V Sbjct: 120 EAMLGALYEDSGMEPIDNILTEVITPHLSHPEEPIIVDYKTKLQEYVQSDSRKTVTYEVI 179 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 +GP + P F V V++ G+ G SK+ AEQ Sbjct: 180 NTTGPSNKPEFEVQVKLEGIILGTGKGNSKKKAEQK 215 >gi|15606266|ref|NP_213645.1| RNase III [Aquifex aeolicus VF5] gi|7531189|sp|O67082|RNC_AQUAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|83753752|pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.5-Angstrom Resolution gi|83753753|pdb|1YYK|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.5-Angstrom Resolution gi|83753764|pdb|1YYW|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.8-Angstrom Resolution gi|83753765|pdb|1YYW|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.8-Angstrom Resolution gi|83753766|pdb|1YYW|C Chain C, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.8-Angstrom Resolution gi|83753767|pdb|1YYW|D Chain D, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.8-Angstrom Resolution gi|160877674|pdb|2NUE|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Ds-Rna At 2.9-Angstrom Resolution gi|160877675|pdb|2NUE|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Ds-Rna At 2.9-Angstrom Resolution gi|160877678|pdb|2NUF|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Ds-Rna At 2.5-Angstrom Resolution gi|160877679|pdb|2NUF|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Ds-Rna At 2.5-Angstrom Resolution gi|160877684|pdb|2NUG|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Ds-Rna At 1.7-Angstrom Resolution gi|160877685|pdb|2NUG|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Ds-Rna At 1.7-Angstrom Resolution gi|2983469|gb|AAC07049.1| RNase III [Aquifex aeolicus VF5] Length = 221 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 115/223 (51%), Gaps = 14/223 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LEK++GY F ++SLLEKALTH S S +E YE LEFLGD ++ I LL + + Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG LS L+S E + +A++L+L FIR+ +I DV E+L AA Sbjct: 62 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFEALWAA 115 Query: 126 LYLDGGIEVAGTFVDKYWKQRALK-----SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +Y+D G + T Y + G+ ++D KT LQE ++ PEY++ Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V +I G SK+ AEQ AA E++K Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIKLL 217 >gi|315924201|ref|ZP_07920427.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263] gi|315622603|gb|EFV02558.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263] Length = 229 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 7/222 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M AL+ L++ IGY F N++ L +ALTHSS + +++ ERLE+LGD +L L IS LF Sbjct: 1 MEALK---LQQSIGYIFKNQAYLHEALTHSSHGN-SEKNNERLEYLGDAVLELSISDYLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+++ S+V +E+ SQ AR L L +++ + SI + E Sbjct: 57 -KHFDFDEGKMTKLRASIVCSESLSQAARRLHLGNYLHLGKGEVISGGRSRQSILENAFE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 +++ A++LD + + + R D KT LQE + EY + Sbjct: 116 AMLGAIFLDSDYSTSQKKAIELLSDNIEMAIAGRLTNDYKTALQELIQKQSDHVIEYVLD 175 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP+HD F V + I+G + G +K+ AEQ AA + L Sbjct: 176 KADGPEHDKTFFVTLMINGQMSSNGRGKTKKEAEQQAAKKSL 217 >gi|288958023|ref|YP_003448364.1| ribonuclease III [Azospirillum sp. B510] gi|288910331|dbj|BAI71820.1| ribonuclease III [Azospirillum sp. B510] Length = 261 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 129/233 (55%), Gaps = 10/233 (4%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSI----------SHSYQESYERLEFLGDRILG 52 + + L + +G+ F+N +LL A+TH S+ +YERLEFLGDR++G Sbjct: 25 SADVAGLARALGHEFSNPTLLCDAVTHPSLMGLERTGRKGHKGPGIAYERLEFLGDRVVG 84 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L+++ L + +EG L+ R +LV E+ +VA + L +++R+S + Sbjct: 85 LVVAQWLLERYPDEREGALAKRHAALVRRESLGRVADAIGLGAYLRLSPAEAQSGGRENR 144 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 +I D E+++ A+YLDGG+E FV + K+ D+KT LQEWA + Sbjct: 145 TILGDACEAVLGAMYLDGGLEPVTRFVRQALAGEIDKATPPPLDSKTTLQEWAQGRGKPL 204 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P Y++T RSGP H+P F V V ++G+ P G SKR AE+ AA+ +L++ G+ Sbjct: 205 PRYELTERSGPAHEPLFVVAVHVAGMDPVSGSGSSKRIAEKKAASALLRQVGV 257 >gi|254785337|ref|YP_003072766.1| ribonuclease III [Teredinibacter turnerae T7901] gi|237684548|gb|ACR11812.1| ribonuclease III [Teredinibacter turnerae T7901] Length = 229 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 121/227 (53%), Gaps = 6/227 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S + + L K + Y F++ SLLEKAL+H S+ + ERLEFLGD +L LI+ L+ Sbjct: 5 SKTKLNQLSKALNYTFSDISLLEKALSHRSVG---SNNNERLEFLGDSLLNFLIAENLYQ 61 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS SLV ET +++A++ DL F+ + K SI AD VE+ Sbjct: 62 RFPKAREGDLSRLRASLVKGETLAELAKDFDLGEFLYLGEGELKSGGFRRASILADAVEA 121 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YL+ G++ V ++ +R A+ +D KT LQE+ P Y V Sbjct: 122 LIGAIYLESGMDRCRDTVLHWFGERLDAIDLNSSVKDPKTRLQEYLQELRQPLPVYTVES 181 Query: 180 RSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + G H P F V +I SKR AE++AAA +LK+ G+ Sbjct: 182 QLGQAHSPEFQVSCDIGRSQGKTVATSSSKRNAEKLAAAAMLKQLGV 228 >gi|183221945|ref|YP_001839941.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912013|ref|YP_001963568.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776689|gb|ABZ94990.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780367|gb|ABZ98665.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 242 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 109/227 (48%), Gaps = 7/227 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 L+ +F + SLL A H S ++ + ERLEFLGD +LG+L + L+ Sbjct: 17 LQELQSITDTSFKDISLLHLAFVHRSFANEDSDRYLSDNERLEFLGDSVLGILAAEYLYK 76 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 KEG L+ + +VSA +++AR F+ + + + ++QAD E+ Sbjct: 77 SLPKGKEGILAKLKSKMVSAPAIAKLARFYRFPDFLLLGKGEK-EKGEANLNLQADCFEA 135 Query: 122 LIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + ALYLD G+ F ++ ++S + +D KT LQE+ K+ PEY + Sbjct: 136 FLGALYLDQGLNSCRIFLTPHFQTMEKGVESAEETKDYKTILQEYCQKKWKKLPEYILLK 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GPDHD F+V V + G +KR AEQ+AA L+ + Sbjct: 196 EEGPDHDKDFSVSVSCENYFQSNGDGKNKRRAEQMAAKAALRILKLL 242 >gi|134045095|ref|YP_001096581.1| ribonuclease III [Methanococcus maripaludis C5] gi|132662720|gb|ABO34366.1| RNAse III [Methanococcus maripaludis C5] Length = 229 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + L ++ F + ++ ++A HSS + + E ERLE+LGD +L L+I Sbjct: 1 MK--NFEKLLSKLDIKFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLELIII 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + EGE+S V A++L+ ++I + +I + Sbjct: 59 EYLFKKENL-SEGEMSKLRAKYVCESALFTYAKKLNFNNYILLGKGELNSKGYNKPAIIS 117 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 DV E+ IAA+YLD G++ A FV +S K + T +Y Sbjct: 118 DVFEAFIAAIYLDQGLDSAKKFVYNNIIPIIEESSKELFIDHKTRLQELPELNNKTIKYV 177 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G HD +F + V+ +G+ SK+ AE AA L + Sbjct: 178 KLEEAGKPHDKKFVIAVKSGQKMLGKGIGKSKKEAEMKAAKNALLKL 224 >gi|229162785|ref|ZP_04290742.1| Ribonuclease 3 [Bacillus cereus R309803] gi|228620667|gb|EEK77536.1| Ribonuclease 3 [Bacillus cereus R309803] Length = 245 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|222529151|ref|YP_002573033.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725] gi|222455998|gb|ACM60260.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725] Length = 222 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 105/218 (48%), Gaps = 1/218 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +EK +GY F +++LL ALTH S +HS + YERLEFLGD L L++S LF HF Sbjct: 2 EEIEKALGYKFMDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVHFPEL 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGEL+ ++V ++T S++A +L+L + I + + SI DVVE++ A+ Sbjct: 62 SEGELTNIRAAVVCSQTLSKIAEKLNLKNHIIFGKREKMEKFHENKSILTDVVEAIFGAI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +++ G E + K K+ + + + + + + Sbjct: 122 FIESGFEKLEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEFVQKKGQKKIVYKDYEIIE-K 180 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + I G ++G SK+ A+Q AA + L G Sbjct: 181 KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218 >gi|115377692|ref|ZP_01464885.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1] gi|310821555|ref|YP_003953913.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1] gi|115365298|gb|EAU64340.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1] gi|309394627|gb|ADO72086.1| Ribonuclease III [Stigmatella aurantiaca DW4/3-1] Length = 240 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 111/233 (47%), Gaps = 10/233 (4%) Query: 1 MSALRYST----LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILG 52 M LE R+G F + L ALTH S + +++ ERLEFLGD ++ Sbjct: 1 MEKQSLQERVQTLETRLGVPFLRKDLGLAALTHKSYFNEHRDAGLQDNERLEFLGDAVVD 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L IS L F A EGELS +V+ E +++AR L L + + Sbjct: 61 LAISHRLMERFPLAAEGELSKLRALIVNEEGLARIARRLSLGELLLLGRGEEMTGGREKN 120 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFG 170 S+ AD +E+++ A++L G+E VD+++ + + R D KT+LQE A + Sbjct: 121 SLLADALEAVVGAVFLGAGMEPVMVLVDQHFAEALDGVAQGRSGLDYKTKLQEDAQTRLK 180 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V P Y+V +GPDH+ F V V I A+ +K+ AEQ AA L Sbjct: 181 VPPRYRVVAEAGPDHEKTFEVEVSIGSELYARATGRNKKEAEQAAARATLDML 233 >gi|94502127|ref|ZP_01308628.1| ribonuclease III [Oceanobacter sp. RED65] gi|94425729|gb|EAT10736.1| ribonuclease III [Oceanobacter sp. RED65] Length = 226 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 117/228 (51%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L +RIGY F + S E ALTH S ++ ERLEFLGD I+ +++ LF Sbjct: 1 MNN-PLIKLSQRIGYTFNDISFFELALTHRS---KGGKNNERLEFLGDSIVNFVVAEALF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F AKEG+LS LV T +++AR+ DL F+ + S K SI AD VE Sbjct: 57 EKFPQAKEGKLSRLRAGLVRGTTLAELARDFDLGEFLLLGSGELKSGGFNRESILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G++ + ++ +R L+ +DAKT LQE P+Y+V Sbjct: 117 AIIGAIYLDSGLDTVRERILTWYGKRLDDLQLDDVVKDAKTRLQEHLQKNQSRLPKYEVM 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225 +G HD F V + L G+ S+R AEQ AA + L G+ Sbjct: 177 EITGQAHDQNFKVSCWVETLPEVTIGLGSSRRLAEQSAAQKALNALGV 224 >gi|47168737|pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Ds-Rna At 2.15 Angstrom Resolution Length = 220 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 115/223 (51%), Gaps = 14/223 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LEK++GY F ++SLLEKALTH S S +E YE LEFLGD ++ I LL + + Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG LS L+S E + +A++L+L FIR+ +I DV ++L AA Sbjct: 62 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFKALWAA 115 Query: 126 LYLDGGIEVAGTFVDKYWKQRALK-----SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +Y+D G + T Y + G+ ++D KT LQE ++ PEY++ Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V +I G SK+ AEQ AA E++K Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIKLL 217 >gi|325661266|ref|ZP_08149893.1| ribonuclease III [Lachnospiraceae bacterium 4_1_37FAA] gi|325472773|gb|EGC75984.1| ribonuclease III [Lachnospiraceae bacterium 4_1_37FAA] Length = 259 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 112/224 (50%), Gaps = 8/224 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61 + K+IGY F + LL+KA+ HSS ++ Q+ ERLEFLGD +L L S LF Sbjct: 34 IKGIRKKIGYTFQKKELLQKAMMHSSYTNEKHMKKQDCNERLEFLGDAVLELTTSEALFF 93 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 S EGEL+ S+V + VA+EL L S++ + SI +D VE+ Sbjct: 94 DNPSMPEGELTKTRASIVCEPALAFVAKELMLGSYLLLGKGEEATGGRQRDSITSDAVEA 153 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LI A+YLDGG A F+ K+ K D+KT LQE AKF Y + Sbjct: 154 LIGAIYLDGGFASAKEFIQKFILSDLENK-KLFYDSKTILQEMVQAKFTENVRYVLEKEE 212 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKR 222 GPDH+ FT I G +K+A+EQ AA + +L++ Sbjct: 213 GPDHNKSFTTSAYIGEECYGTGSGRTKKASEQEAAYQTILMLRK 256 >gi|291613749|ref|YP_003523906.1| ribonuclease III [Sideroxydans lithotrophicus ES-1] gi|291583861|gb|ADE11519.1| ribonuclease III [Sideroxydans lithotrophicus ES-1] Length = 224 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 6/224 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++++ L KR+GY F LL++ALTH S S ERLEFLGD +L I+ L++ + Sbjct: 1 MKHAALCKRLGYQFLQPQLLQRALTHRSYS---AAHNERLEFLGDSVLNCAIAKYLYDTY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS ++LV+ +T + +A++L+L + + RK SI AD +E+L Sbjct: 58 PDLPEGDLSRLRSNLVNQQTLAILAQQLNLGEQLLLGEGERKSAGFRRPSILADALEALF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ LD G A V + +++ +DAKT LQE ++ P+Y V Sbjct: 118 GAVLLDAGFMAAEKVVLGLYVPFIVQTDLKTLGKDAKTLLQEHLQSRKLALPQYHVAEIK 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224 G H F V EI+ L +QG S+R AEQ+AA ++ Sbjct: 178 GEAHAQTFVVTCEIAQLGLVSQGEGTSRRIAEQIAAERAYQQIK 221 >gi|229174515|ref|ZP_04302047.1| Ribonuclease 3 [Bacillus cereus MM3] gi|228609075|gb|EEK66365.1| Ribonuclease 3 [Bacillus cereus MM3] Length = 245 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F++ LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|78485079|ref|YP_391004.1| ribonuclease III [Thiomicrospira crunogena XCL-2] gi|78363365|gb|ABB41330.1| RNAse III [Thiomicrospira crunogena XCL-2] Length = 233 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 120/230 (52%), Gaps = 10/230 (4%) Query: 1 MSAL----RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56 MS + + + L K +GY + N L++ALTH S+ ++ ERLEFLGD ++ +I+ Sbjct: 1 MSEMEKQAKLNRLSKSLGYQYKNIEFLQRALTHRSMG---AKNNERLEFLGDSLVNFMIA 57 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF+ F EG+LS LV ET +++ +E L+ ++ + K SI A Sbjct: 58 DALFHQFHKISEGDLSRIRAFLVKGETLAKIGKEYQLSDYLMLGPGELKSGGYRRESIIA 117 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPE 174 D VE++IA++Y DGG++ FV + ++ R K +D KT LQE+ + PE Sbjct: 118 DTVEAIIASVYEDGGLDACRAFVMRLYENRLKELDPSKIGKDPKTRLQEFLQSNREQLPE 177 Query: 175 YKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 Y V +GP H FTV ++ L + ++R AEQVAA E L Sbjct: 178 YSVMTVNGPAHAQEFTVSCYVAKLNRKFEATATNRRKAEQVAAQEALDIL 227 >gi|83753758|pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.9- Angstrom Resolution gi|83753759|pdb|1YYO|B Chain B, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.9- Angstrom Resolution Length = 221 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 115/223 (51%), Gaps = 14/223 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LEK++GY F ++SLLEKALTH S S +E YE LEFLGD ++ I LL + + Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG LS L+S E + +A++L+L FIR+ +I DV ++L AA Sbjct: 62 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFKALWAA 115 Query: 126 LYLDGGIEVAGTFVDKYWKQRALK-----SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +Y+D G + T Y + G+ ++D KT LQE ++ PEY++ Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V +I G SK+ AEQ AA E++K Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIKLL 217 >gi|229031479|ref|ZP_04187479.1| Ribonuclease 3 [Bacillus cereus AH1271] gi|228729768|gb|EEL80748.1| Ribonuclease 3 [Bacillus cereus AH1271] Length = 245 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F++ LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|229019045|ref|ZP_04175885.1| Ribonuclease 3 [Bacillus cereus AH1273] gi|228742247|gb|EEL92407.1| Ribonuclease 3 [Bacillus cereus AH1273] Length = 245 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F++ LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227 >gi|163941587|ref|YP_001646471.1| ribonuclease III [Bacillus weihenstephanensis KBAB4] gi|229013032|ref|ZP_04170197.1| Ribonuclease 3 [Bacillus mycoides DSM 2048] gi|229134657|ref|ZP_04263466.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196] gi|229564349|sp|A9VT87|RNC_BACWK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|163863784|gb|ABY44843.1| Ribonuclease III [Bacillus weihenstephanensis KBAB4] gi|228648703|gb|EEL04729.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196] gi|228748286|gb|EEL98146.1| Ribonuclease 3 [Bacillus mycoides DSM 2048] Length = 245 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A E+ S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E ++ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGYLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNEALGLGSGKSKK 227 >gi|229168588|ref|ZP_04296311.1| Ribonuclease 3 [Bacillus cereus AH621] gi|228614994|gb|EEK72096.1| Ribonuclease 3 [Bacillus cereus AH621] Length = 245 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A E+ S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E+ ++ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLEIVWGYLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNEALGLGSGKSKK 227 >gi|50954668|ref|YP_061956.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07] gi|81391047|sp|Q6AFJ4|RNC_LEIXX RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|50951150|gb|AAT88851.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07] Length = 237 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 102/229 (44%), Gaps = 10/229 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 S L +++G + LLE ALTH S ++ + ERLEFLGD ILG ++ L Sbjct: 4 ENTDRSALLEKLGVDI-DPELLELALTHRSYAYENGGIPNNERLEFLGDSILGQAVTVKL 62 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F EGEL+ R SLVS+ ++VAR + L ++ + + SI AD V Sbjct: 63 FRENPGLDEGELAKRRASLVSSVALAEVARGIGLGEYLLLGRGENQSGGREKASILADTV 122 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLD G + A V + +F + A A G Sbjct: 123 EAVIGAVYLDAGGDEATALVLRLIGPLLADPDRFGAAMDPKTSLQEAAAHHGAGQPVYTV 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 +GPDH F V++ GL A G SK+ AE AA WT Sbjct: 183 INTGPDHSKTFHATVDVGGLVTASGEGTSKKQAEMAAALSA------WT 225 >gi|317125435|ref|YP_004099547.1| RNAse III [Intrasporangium calvum DSM 43043] gi|315589523|gb|ADU48820.1| RNAse III [Intrasporangium calvum DSM 43043] Length = 265 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 59/221 (26%), Positives = 98/221 (44%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + LE+ +G + LL ++LTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 24 LAHLEEVVGQEI-DEPLLLRSLTHRSFAYENGGVPNNERLEFLGDSVLGLVVTDTLYRSH 82 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ ++V+ + VAR DL ++ + SI AD +E+LI Sbjct: 83 PDLPEGQLAKLRAAVVNMRALADVARTFDLGQYVMLGKGEEATGGRDKASILADSMEALI 142 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSG 182 +YL I++A F+ ++ ++ + A G G Sbjct: 143 GTVYLSTDIDLAAQFIHHHFDAILEEAATLGAGLDWKTSLQQVAAAVGQGAPEYRVAEQG 202 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH+ F V + +G SK+ AEQ AA E + Sbjct: 203 PDHEKEFHARVVLGEEVLGEGHGRSKKEAEQKAAQEAWQSL 243 >gi|218885347|ref|YP_002434668.1| ribonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226735370|sp|B8DPB3|RNC_DESVM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|218756301|gb|ACL07200.1| Ribonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 230 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 114/223 (51%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNH 62 + L+ I YAF + LL A+THSS ++ + E ERLEFLGD +L L +S LF Sbjct: 2 FEKLQSDIHYAFNDAGLLATAMTHSSWANEQQEHVEHNERLEFLGDAVLELCVSEELFAR 61 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+L+ LVS +++AR+L L ++R+ +S+ +D +E++ Sbjct: 62 FPGAREGDLTRMRARLVSKPALAELARDLQLELYLRLGRGEESQGGRERSSLLSDALEAM 121 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A++LDGG E A V R K +D K+ LQE + F P Y + Sbjct: 122 LGAVFLDGGYERARAVVRHVLAARWPCDADGKRSKDYKSRLQELTQSLFRERPVYALMGS 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP+H+ RF V + + + S + AEQ+AA LK Sbjct: 182 SGPEHEKRFEVRLTLPDGTVFTAIGPSVKRAEQMAAGLALKNL 224 >gi|218248059|ref|YP_002373430.1| Ribonuclease III [Cyanothece sp. PCC 8801] gi|257060612|ref|YP_003138500.1| ribonuclease III [Cyanothece sp. PCC 8802] gi|218168537|gb|ACK67274.1| Ribonuclease III [Cyanothece sp. PCC 8801] gi|256590778|gb|ACV01665.1| ribonuclease III [Cyanothece sp. PCC 8802] Length = 225 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 102/219 (46%), Gaps = 11/219 (5%) Query: 16 AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N+ LL+ ALTH S + + E ERLEFLGD IL ++S L+ + E +L+ Sbjct: 6 QFKNQELLDCALTHRSYINEHFEVTEHNERLEFLGDAILQFVVSEELYRRYPELTEAQLT 65 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + LV +Q AR LDL + + KD ++ +D E++I A +LD GI Sbjct: 66 RLRSKLVDEPQLAQFARTLDLGQLMYLGQGAIKDGGRENPALLSDAFEAIIGAYFLDAGI 125 Query: 133 EVAGTFVDKYWK--------QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 E FV +K + D K LQ+WA ++ PEY + +SGPD Sbjct: 126 EAVQYFVRSLFKEAIDNLVLPESRTVSPSIIDVKNRLQQWALEQYKQVPEYFLIEQSGPD 185 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H F V I+G G K+ A + AA + L + Sbjct: 186 HAKEFVFGVRINGQVLGTGKGRRKQEATKAAAQDALDKL 224 >gi|152976215|ref|YP_001375732.1| ribonuclease III [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189043291|sp|A7GRH9|RNC_BACCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|152024967|gb|ABS22737.1| Ribonuclease III [Bacillus cytotoxicus NVH 391-98] Length = 245 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++++G F N LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FRAFQQKLGITFTNEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A EL S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G++ F+ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLDTVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ +A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNSVALGLGSGKSKK 227 >gi|229061452|ref|ZP_04198797.1| Ribonuclease 3 [Bacillus cereus AH603] gi|228717875|gb|EEL69523.1| Ribonuclease 3 [Bacillus cereus AH603] Length = 245 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 + ++ IG F + LL +A THSS + ++ E ERLEFLGD +L L +S LF Sbjct: 19 FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EGEL+ ++V + + A E+ S + + ++ ADV E+ Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G+E ++ + + + D K++LQE EY++ Sbjct: 139 FIGALYLDQGLETVWGYLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V ++ A G SK+ Sbjct: 199 KGPAHNREFVSRVTLNNEALGLGSGKSKK 227 >gi|153871985|ref|ZP_02001008.1| Ribonuclease III [Beggiatoa sp. PS] gi|152071548|gb|EDN68991.1| Ribonuclease III [Beggiatoa sp. PS] Length = 225 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 117/228 (51%), Gaps = 6/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ Y+ L + +GY F L ALTH S+ ERLEFLGD +L + + +L+ Sbjct: 1 MNQ-DYNHLCQALGYHFKQPEHLTTALTHRSVG---TPHNERLEFLGDALLNCITAKMLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F SA+EG+L+ +LV +T ++A+ L+L ++R+ K + TS AD VE Sbjct: 57 ERFPSAREGQLTRLRANLVKRDTLVKIAQRLELGKYLRLGDGEIKSGGAKRTSTLADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++I A+YLD ++ + W++ + S + +D KT LQE+ + P Y+V Sbjct: 117 AIIGAIYLDSDMKTCQAVILPIWQESLSKLSLEKIKDPKTRLQEYLQERQQTLPIYRVLS 176 Query: 180 RSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 SG H+ F V I P G S+R AEQ AAA+VL + Sbjct: 177 TSGTPHEQHFEVECRIPYLKEPTYGSGHSRRRAEQSAAAKVLSILNVI 224 >gi|126739723|ref|ZP_01755415.1| ribonuclease III [Roseobacter sp. SK209-2-6] gi|126719369|gb|EBA16079.1| ribonuclease III [Roseobacter sp. SK209-2-6] Length = 228 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 82/210 (39%), Positives = 118/210 (56%), Gaps = 1/210 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + E+RIGY F LL +ALTH S+S ++ +RLEFLGDR+LGL+++T + Sbjct: 1 MKLSKDMRAFEERIGYRFKRVDLLVRALTHPSVSSPNRKDNQRLEFLGDRVLGLVMATAM 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 A EG+L+ RFN+LV ETC+ VARE+DL + +++ ++ D + Sbjct: 61 LESDKEASEGQLAPRFNALVRKETCADVAREIDLGAVLKLGRSEMMSGGRRKLALLGDGM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+Y D G EVA + + W QR + + RD KT LQE+ A+ P Y Sbjct: 121 EAVIAAVYKDAGFEVAQDMILRLWGQRIFQVEEDARDPKTALQEYVQARRQPPPAYVQVS 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 R GPDH+P FT+ V + Q SKR Sbjct: 181 RQGPDHEPIFTIAVRLQDGTEEQASAGSKR 210 >gi|88606764|ref|YP_505691.1| ribonuclease III [Anaplasma phagocytophilum HZ] gi|123494405|sp|Q2GIW0|RNC_ANAPZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|88597827|gb|ABD43297.1| ribonuclease III [Anaplasma phagocytophilum HZ] Length = 236 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 77/217 (35%), Positives = 117/217 (53%), Gaps = 2/217 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + K GY F + LL+ A+TH SI+ SYERLEFLGD +LGL++S +L+ F Sbjct: 14 EKVFKISGYRFQDHELLKTAVTHPSIAAERYASYERLEFLGDAVLGLVVSEMLYTLFPDD 73 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ + +LV ++A+ L+L + + +S S + +E+LI A+ Sbjct: 74 SEGLLTKKRIALVRGSKVVEIAQSLNLGNILLMSKGELTSGGISNNSNLENALEALIGAI 133 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 Y+DGG+E F+ ++WK A +DAKT LQEWA P Y++ +SG +H Sbjct: 134 YVDGGLESVRHFILQHWKPLATNLADTPLQDAKTALQEWAQGHNFAIPSYRLINKSGLEH 193 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P FTV V ++G C K+ AE AA +L++ Sbjct: 194 APVFTVEVTVNGQRV-HATGCKKKYAEIAAAKLMLEK 229 >gi|262375526|ref|ZP_06068759.1| ribonuclease III [Acinetobacter lwoffii SH145] gi|262309780|gb|EEY90910.1| ribonuclease III [Acinetobacter lwoffii SH145] Length = 232 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 117/225 (52%), Gaps = 5/225 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S L L KRIGY F LL+ ALTH S+SH + +YERLEFLGD +LG++I+ LFN Sbjct: 6 SKLNDERLAKRIGYQFKQADLLKLALTHRSVSHKH--NYERLEFLGDSLLGMIIANYLFN 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S EG L+ +LV E ++A +L L+ + +S+ K SI AD VE+ Sbjct: 64 AYPSENEGRLTRMRATLVRQEALGKIANDLKLSQNLILSTGELKSGGHHRESILADTVEA 123 Query: 122 LIAALYLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+Y+D G ++ +D K+ LQE+ A+ P Y+V Sbjct: 124 IIGAIYVDCGDLTVLEPIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 183 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G + F V +I+GL QG S+R AEQ AA++LK Sbjct: 184 DIQGDAPNQHFKVECQIAGLPTMQGEGASRRFAEQAVAADILKLL 228 >gi|116492609|ref|YP_804344.1| ribonuclease III [Pediococcus pentosaceus ATCC 25745] gi|122265927|sp|Q03FX0|RNC_PEDPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116102759|gb|ABJ67902.1| RNAse III [Pediococcus pentosaceus ATCC 25745] Length = 232 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 5/228 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L + F N +LL++A T +S + + + YER+EFLGD +L L++S Sbjct: 1 MIKALEDDLSQTFDIHFNNHALLDEAFTQASYVNEHPHQELKFYERIEFLGDAVLQLIVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + +G+L+ ++V + S A+E +IR+ K +S+ Sbjct: 61 EYLFKRYPEMPQGKLTRLRAAMVCEASFSDFAKECHFDQYIRLGKGEEKSGARQRSSLLC 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ ES I ALYLD G FV + D K+ELQE V +Y Sbjct: 121 DIFESFIGALYLDQGRAAVERFVRIVIFPKLDEGKFDHIIDHKSELQELLQKNGDVEIDY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ GP++D FTV V A G SK+ AEQ AA + L+ Sbjct: 181 ELVSEEGPENDLIFTVSVTADHKKLATGTGHSKKVAEQNAANQALQLL 228 >gi|294139709|ref|YP_003555687.1| ribonuclease III [Shewanella violacea DSS12] gi|293326178|dbj|BAJ00909.1| ribonuclease III [Shewanella violacea DSS12] Length = 225 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 116/227 (51%), Gaps = 6/227 (2%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + L + +GY F ++ L++ALTH S S + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNIPRLCRTLGYQFTQQAHLDQALTHRSASS---KHNERLEFLGDSILSIIISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F EG+LS +LV + +++ E L ++++ K SI AD V Sbjct: 58 YHQFPKVTEGDLSRMRATLVCGKMLAEIGFEFKLGDYLKLGPGELKSGGFRRESIIADGV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLD +E V +++ R A+ ++D KT LQE P YKVT Sbjct: 118 EAIIGAIYLDADLETCRARVLSWYESRLAIIEPINQKDPKTLLQELLQGFKKPLPVYKVT 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 G H FTV + L G+ S+R AEQ+AAA+VL+ Sbjct: 178 DIKGEAHAQTFTVECSVEELKKPLVGVASSRRKAEQIAAAQVLELIK 224 >gi|157737847|ref|YP_001490531.1| ribonuclease III [Arcobacter butzleri RM4018] gi|315637636|ref|ZP_07892842.1| ribonuclease III [Arcobacter butzleri JV22] gi|189043289|sp|A8EV88|RNC_ARCB4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157699701|gb|ABV67861.1| ribonuclease III [Arcobacter butzleri RM4018] gi|315478090|gb|EFU68817.1| ribonuclease III [Arcobacter butzleri JV22] Length = 224 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 4/208 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS LEK + Y F N++L+ +ALTH S Y + ERLEFLGD +L L++ L+ F Sbjct: 3 DYSKLEKCLDYQFKNKNLIIEALTHKSFKKPY--NNERLEFLGDAVLNLIVGEYLYLKFP 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EGELS SLV+ +++A E+ L +I +S+ ++ SI +D E+++ Sbjct: 61 KSNEGELSKIRASLVNETGFTRLANEIKLGEYIFISTAEERNKGRTKASILSDAFEAIMG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL+ G+ + + ++ K D KT LQE A+F PEYK+ G Sbjct: 121 AIYLESGLNTLKPIILRILEESYDKINLDVLFSDYKTALQEITQARFASIPEYKIEGSYG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRA 210 PDH F V + I G + SK+ Sbjct: 181 PDHKKEFEVSIWIDGKNYGKASGKSKKL 208 >gi|182679393|ref|YP_001833539.1| ribonuclease III [Beijerinckia indica subsp. indica ATCC 9039] gi|182635276|gb|ACB96050.1| Ribonuclease III [Beijerinckia indica subsp. indica ATCC 9039] Length = 235 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 99/224 (44%), Positives = 133/224 (59%), Gaps = 2/224 (0%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFN 61 LE RIG+ F LL ALTH S+ + +E+Y+RLEFLGDR+LGL+I+ +L+ Sbjct: 5 KQDLEPLETRIGHRFVEADLLTTALTHVSVTVGARRETYQRLEFLGDRVLGLVIAEMLYA 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EGELS R LV E+C++VA E + F+R+ + + + +I DV ES Sbjct: 65 TFPEAEEGELSRRLADLVRKESCAEVALEWGVGPFVRLGES-ERQIGTTKKAILGDVCES 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +I A++LD G VA + K + R + RDAKT LQEWA ++ TP Y+ R Sbjct: 124 IIGAVFLDAGYTVAQQVIVKAFDARMRSPRRPLRDAKTVLQEWAQSRGHPTPLYREICRC 183 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 GPDH P FT+ V I G A AQ SKR AEQ AAA ++REGI Sbjct: 184 GPDHAPEFTISVCIPGYADAQAKGPSKRLAEQAAAAHFIEREGI 227 >gi|19703497|ref|NP_603059.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|22654053|sp|Q8RGX3|RNC_FUSNN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|19713585|gb|AAL94358.1| Ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 234 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 115/231 (49%), Gaps = 9/231 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ Sbjct: 1 MK--NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQTNERLELLGDAVLDLIVA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + +A EG ++ +VS ++++R++ + F+ +S SI A Sbjct: 59 EYLYKSYKNASEGPIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILA 118 Query: 117 DVVESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 D E+++ A+Y+D ++ A F ++ + D K+ LQE+ +F P Sbjct: 119 DSFEAILGAVYIDSNLDEARVFALSHIKQYIDHIEENEDILDFKSILQEYVQKEFKTVPT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 Y++ GPDH F + V + + + +K+ AEQ++A + + G+ Sbjct: 179 YELVAERGPDHMKEFEIQVIVGNYKE-KAVARNKKKAEQLSAKALCIKLGV 228 >gi|313892793|ref|ZP_07826374.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412] gi|313442724|gb|EFR61135.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412] Length = 246 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 112/224 (50%), Gaps = 6/224 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 L R+ ++ S+++ A TH+S ++ ++ +RLEFLGD +L L+I LF Sbjct: 19 LHELVARLDIPVSDISIIDCAFTHTSYANEHKSKHINHNQRLEFLGDAVLDLIIGEYLFK 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ EG L+ + V ++ + V+R L L ++ + R + SI AD ES Sbjct: 79 NYPDMAEGNLTKIKAATVCEDSLASVSRSLQLGQYLLLGHGERASGGNDRNSILADTFES 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+Y+ + A TFV K+ + GK D KT LQE+ Y++ Sbjct: 139 LIGAIYISTDYQTAMTFVLKHLTIYIKQALEGKRGNDYKTLLQEYVQRDGDKHIVYRLLS 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH F +VVEI+G+ G SK+ AEQ AA L++ Sbjct: 199 ESGPDHAKTFHIVVEINGVTYEAGSGKSKKIAEQHAAQLTLEKL 242 >gi|304440214|ref|ZP_07400104.1| ribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371263|gb|EFM24879.1| ribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640] Length = 226 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 10/227 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M L+Y I Y F N L ALTHSS S+ +E S ERLEFLGD +L L++ Sbjct: 1 MKNLKYLN----ISYEFKNEELFRTALTHSSYSNENKEKCKYSNERLEFLGDAVLDLVVG 56 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 F F EG+LS+ +V + +++A++++L I + K+ SI A Sbjct: 57 EYFFKQFKVR-EGQLSMMRAKVVKESSLAKIAKKINLGEMILLGKGEEKNNGREKLSILA 115 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LI A+YLD +VA F+ + K+ + + + + Sbjct: 116 DSLEALIGAIYLDSSFDVAKEFILDIMSEELEKAHESSYLVDYKSRLQEVCQMAHLNIEY 175 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V ++ GP + F V + G +G S + +EQ+AA + L + Sbjct: 176 VLEKTNGPLNSRVFYSKVIVDGKVFGRGEGNSIKKSEQMAAKDALSK 222 >gi|171057289|ref|YP_001789638.1| ribonuclease III [Leptothrix cholodnii SP-6] gi|170774734|gb|ACB32873.1| Ribonuclease III [Leptothrix cholodnii SP-6] Length = 228 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS TL+ R+G+ F ++SLL +A++H S + ERLEFLGD +L + +S LLF Sbjct: 1 MSTYPLDTLQARLGHVFRDQSLLLRAVSHRS---HGADHNERLEFLGDAVLNMTVSDLLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + FD + EG+L+ LV + ++A L L + +R+S + + SI AD +E Sbjct: 58 DQFDDSPEGDLTRVRAHLVRQDMLHRLALSLQLPAVLRLSDGEARAGGAQRPSILADAME 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+Y D G E A V + ++ + + +DAKT+LQEW A+ PEY++ Sbjct: 118 AVIGAVYRDAGYEAAQALVRRLFEPLVSETVTQAWAKDAKTQLQEWLQARRQSVPEYRIE 177 Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 G HD F VV ++G A+G S+RAAEQ AA VL++ Sbjct: 178 TTRGRAHDQTFVVVCSVAGPGIEARGEGRSRRAAEQEAARLVLEQL 223 >gi|292670166|ref|ZP_06603592.1| ribonuclease III [Selenomonas noxia ATCC 43541] gi|292648118|gb|EFF66090.1| ribonuclease III [Selenomonas noxia ATCC 43541] Length = 238 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 73/218 (33%), Positives = 112/218 (51%), Gaps = 8/218 (3%) Query: 1 MSALRYSTLEKR---IGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLL 54 M R + L + +G +F + +LL++ALTH S ++ ++ ERLEFLGD +L L Sbjct: 5 MKDERLAQLMRLSAEMGVSFNDFALLDEALTHPSYTNEAKDTIPHNERLEFLGDAVLELA 64 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ST L+ F EGEL+ SLV + T +++AR LDL S +R+ + + + Sbjct: 65 SSTYLYARFPDCSEGELTKMRASLVQSNTLARLARALDLGSCLRLGRGEFHNGGADRQNN 124 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVT 172 + E++I A+YLD G E A +V + + A K + D KT LQE + Sbjct: 125 LENAFEAVIGAVYLDAGWETAKEYVARQLSREADHIKKAQVVHDYKTTLQEHIQQRRNKG 184 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 Y++ SGPDHD RFT+ V + +G SK+ Sbjct: 185 IVYELIDESGPDHDKRFTMRVLVDNQPIGEGAGRSKKE 222 >gi|322803055|gb|EFZ23143.1| hypothetical protein SINV_00854 [Solenopsis invicta] Length = 1447 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T S ++ S +RLEFLGD +L L++S L+ Sbjct: 990 KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1049 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T + V +L + + + + T +AD++E+ Sbjct: 1050 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK----TKDRADLLEAF 1105 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA------HAKFGVTPE 174 + ALY+D G++ F D + + + D K++LQ+ P Sbjct: 1106 LGALYVDKGLKYCHIFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1165 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV GP + +TV V G A S + AE +A E L++ Sbjct: 1166 YKVIECKGPTNTRVYTVAVYFQGKRLATASGHSIQEAEMNSAKEALEK 1213 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 20/34 (58%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE+ +GY F NR LL+ ALTH S ++ + Sbjct: 759 LDNLERTLGYEFKNRYLLQLALTHPSYRENFGTN 792 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 58/122 (47%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ERLEFLGD ++ L S LF+ F +EG L+ ++V + + +A++L+L ++ Sbjct: 847 HNERLEFLGDAVVEFLTSIHLFHMFPELEEGGLATYRAAIVQNQHLAVLAKKLNLEEYML 906 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158 + + A+ E+L+ +L+LDGGIEVA + + K + Sbjct: 907 YAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKGEEDLAKVWVNYP 966 Query: 159 TE 160 Sbjct: 967 RH 968 >gi|238019508|ref|ZP_04599934.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748] gi|237864207|gb|EEP65497.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748] Length = 245 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 112/224 (50%), Gaps = 6/224 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 L R+ ++ S+L+ A TH+S ++ ++ +RLEFLGD +L L+I LF Sbjct: 19 LHGLVARLDIPVSDISILDCAFTHTSYANEHKSKHINHNQRLEFLGDAVLDLIIGEYLFK 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG+L+ + V ++ + V+R L L ++ + R + SI AD ES Sbjct: 79 TYPDMAEGDLTKIKAATVCEDSLASVSRSLQLGQYLLLGHGERASGGNNRNSILADTFES 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+Y+ + A FV K+ + GK +D KT LQE+ Y++ Sbjct: 139 LIGAIYISTDYQTAMNFVLKHLITYIKQALEGKRGKDYKTLLQEYVQRDGDKHTVYRLLS 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH F +VVEI+G+ G SK+ AEQ AA L++ Sbjct: 199 ESGPDHAKTFHMVVEINGVTYEAGSGKSKKIAEQHAAQLTLEKL 242 >gi|83951643|ref|ZP_00960375.1| ribonuclease III [Roseovarius nubinhibens ISM] gi|83836649|gb|EAP75946.1| ribonuclease III [Roseovarius nubinhibens ISM] Length = 227 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 92/221 (41%), Positives = 125/221 (56%), Gaps = 1/221 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + R+G+ F +LL +ALTHSS+S ++ +RLEFLGDR+LGL++S L Sbjct: 1 MKLSAEIKAFAARLGHEFQTPALLVQALTHSSMSTPNRDDNQRLEFLGDRVLGLVMSEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 H A EG L+ RFN+LV ETC+ VAR++DL + +++ ++ D + Sbjct: 61 LEHDRKAAEGTLAPRFNALVRKETCADVARQIDLGAVLKLGRSEMLSGGRRKQALLGDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+YLD G E A T V W R + RDAKT LQEWA A+ P Y+ Sbjct: 121 EAVIAAVYLDAGFETARTVVLALWGDRITRVEADARDAKTALQEWAQARGLAPPRYEEVA 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 RSGPDH P FT+V + A SKR AEQ AA +L Sbjct: 181 RSGPDHAPEFTIVARLETGEEAASKAGSKRQAEQAAAKALL 221 >gi|320528410|ref|ZP_08029572.1| ribonuclease III [Solobacterium moorei F0204] gi|320131324|gb|EFW23892.1| ribonuclease III [Solobacterium moorei F0204] Length = 226 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 7/222 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63 LE R N ++++A HSS +H + ERLEF+GD +L L S ++ Sbjct: 6 IEWLESR-HIKVNNAKMIQQAFIHSSYAHEHKNKNDNERLEFMGDAVLQLWSSNAIYPLN 64 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG ++ LV + + R+L L ++ + S K +I AD+ E+ + Sbjct: 65 L--SEGHMTRLRAQLVCEKALAIYGRQLHLNDYLLLGSGEEKTGGRNKDAIIADMFEAFL 122 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AL+LD G++ + + R D KT+LQE+ + T +Y++ + Sbjct: 123 GALFLDQGMDAVDNILSEVITPRLAHPEDVGVIHDYKTKLQEYVQSDSRQTVKYELVSET 182 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP + P F + V + GL G SK+ AEQ AA ++ Sbjct: 183 GPSNAPEFVMNVLVDGLVLGTGSGQSKKQAEQNAARNAFEKM 224 >gi|223932807|ref|ZP_03624804.1| Ribonuclease III [Streptococcus suis 89/1591] gi|302023944|ref|ZP_07249155.1| ribonuclease III [Streptococcus suis 05HAS68] gi|330832996|ref|YP_004401821.1| ribonuclease III [Streptococcus suis ST3] gi|223898516|gb|EEF64880.1| Ribonuclease III [Streptococcus suis 89/1591] gi|329307219|gb|AEB81635.1| ribonuclease III [Streptococcus suis ST3] Length = 228 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 6/229 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L ++ L G F++ +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 1 MKDL-HAKLLADFGIDFSDLNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLMIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EGE+S ++ V E+ + +R F+R+ K +I Sbjct: 60 KYLYQKYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 D E+ + AL LD G + F+ K R + + D KT LQE + Y Sbjct: 120 DAFEAFLGALLLDKGEKTVEEFIHKVMIPRLEKGNFERVTDYKTALQEILQVNGEIAISY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +V SGP HD F V V +G SK+ AEQ AA ++ G Sbjct: 180 QVIAESGPAHDKTFEVEVSADRRVIGRGRGRSKKLAEQAAAKNAVEARG 228 >gi|218291547|ref|ZP_03495421.1| Ribonuclease III [Alicyclobacillus acidocaldarius LAA1] gi|258511329|ref|YP_003184763.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218238642|gb|EED05867.1| Ribonuclease III [Alicyclobacillus acidocaldarius LAA1] gi|257478055|gb|ACV58374.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 241 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 62/213 (29%), Positives = 100/213 (46%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + ++ L+ + F + +LL++A TH+S + ++ E ERLEFLGD +L L++S Sbjct: 1 MQS-KWLELQGLLNLQFNDVNLLKQAFTHASYRNEHRKLHVEDNERLEFLGDAVLELVVS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EGEL+ ++V + + A+ L +IR+ + ++ A Sbjct: 60 DFLYRTYPKMPEGELTRMRAAIVCEASLVRFAKRLSFDQYIRLGRGEERSGGRSRPALLA 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 DV E+ + ALYLD G+E FV + D KT LQE + Y Sbjct: 120 DVFEAFLGALYLDQGLEAVRQFVHTHMVPYLPDVSAG-LDYKTALQELVQQRHQTPVRYV 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + GP H F V VE+ G G+ SK+ Sbjct: 179 IVEERGPAHAREFVVQVELGGEVRGVGIGRSKK 211 >gi|315648181|ref|ZP_07901282.1| ribonuclease III [Paenibacillus vortex V453] gi|315276827|gb|EFU40170.1| ribonuclease III [Paenibacillus vortex V453] Length = 232 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 5/210 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 L+ ++ F N LL++A TH+S + ++ + ERLEFLGD +L L +S L+ Sbjct: 4 DLKQLQHKLQIQFRNAMLLKQAFTHASYVNEHRFSQSQDNERLEFLGDAVLELTVSEFLY 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N F EGEL+ ++V + Q A LD ++ + ++ ADV E Sbjct: 64 NLFPDRPEGELTKLRAAIVCEPSLVQFAVGLDFGRYVLLGKGEEMTGGRTRPALLADVFE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 S + ALYLD G+E F+ + + D KTELQE EY++ Sbjct: 124 SFVGALYLDQGLEAVRRFLSDHVFPSVTVNGRPQMSDYKTELQELTQHHGMGALEYRIVE 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H+ F V + +G SK+ Sbjct: 184 ERGPAHEREFVSEVYMGSECLGRGSGRSKK 213 >gi|195402669|ref|XP_002059927.1| GJ15113 [Drosophila virilis] gi|194140793|gb|EDW57264.1| GJ15113 [Drosophila virilis] Length = 1306 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 81/224 (36%), Gaps = 6/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ H Sbjct: 955 DLTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1014 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + + ++ + + +L Sbjct: 1015 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLKTKDRADLLEAFLGAL 1074 Query: 123 IA----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + + + K + P YKV Sbjct: 1075 YVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVV 1134 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP + + V V A S + AE AA + L+ Sbjct: 1135 EASGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALEN 1178 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 20/34 (58%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE+ IGY F NR LL+ ALTH S +Y + Sbjct: 724 LDLLEESIGYKFKNRYLLQLALTHPSYKENYGTN 757 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 49/98 (50%) Query: 36 YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A++L L Sbjct: 809 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 868 Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 F+ + + A+ E+L+ AL LDGGI+ Sbjct: 869 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 906 >gi|53804477|ref|YP_113920.1| ribonuclease III [Methylococcus capsulatus str. Bath] gi|81682093|sp|Q608M7|RNC_METCA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|53758238|gb|AAU92529.1| ribonuclease III [Methylococcus capsulatus str. Bath] Length = 230 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 110/220 (50%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L +++G F + LL ALTH S + ERLEFLGD +LG +++ L+ F SA Sbjct: 6 EHLARKLGIPFRDPGLLRNALTHRSAE---GVNNERLEFLGDSVLGFVVTEYLYQRFPSA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LS +LV+ + +++AREL+L ++ + S K SI +D +E+++ A+ Sbjct: 63 DEGVLSRLRATLVNETSLARIARELELGEYLILGSGELKSGGYRRDSILSDALEAILGAV 122 Query: 127 YLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D GI+ AL +++D KT LQE + P Y + +SG Sbjct: 123 LRDQGIDACRALILTLFERPLSALSLDDWKKDPKTRLQELMQGRGLPLPVYTLIDQSGLP 182 Query: 185 HDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 HD F V E+ + P G S++ AEQ AA +L R Sbjct: 183 HDQHFRVRCEVPLAVEPCVGEGSSRKKAEQQAAENMLSRL 222 >gi|331002416|ref|ZP_08325934.1| ribonuclease III [Lachnospiraceae oral taxon 107 str. F0167] gi|330410232|gb|EGG89666.1| ribonuclease III [Lachnospiraceae oral taxon 107 str. F0167] Length = 232 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 67/215 (31%), Positives = 102/215 (47%), Gaps = 10/215 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIS 56 M+ L++ +GY + N+ LL++ALTHSS ++ + S ERLEFLGD +L L+ S Sbjct: 1 MNN-NLKELQELLGYEYKNKELLKQALTHSSYANEHQLGKNGSNERLEFLGDAVLELVSS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 + + EGEL+ S V A+ + L+ F+++ SI + Sbjct: 60 EFFYGVYPEKPEGELTKIRASFVCEPALVDCAKNIKLSEFLKLGKGEEHTGGRMRPSIIS 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E++I ++YLDGG A + K+ F D+KT LQE ++ EY Sbjct: 120 DTFEAIIGSIYLDGGFASAKEVILKFILNEYENKV-FFYDSKTILQEVIQSQDSKPVEYT 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAP--AQGMDCSKR 209 + GPDH +F V V I G G SK+ Sbjct: 179 LLSEEGPDHLKKFVVAVNIDGK--RAGVGEGVSKK 211 >gi|114566311|ref|YP_753465.1| ribonuclease III [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318607|sp|Q0AYW0|RNC_SYNWW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|114337246|gb|ABI68094.1| RNAse III [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 233 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 100/204 (49%), Gaps = 3/204 (1%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 L+ ALTH S + + +RLEFLGD +L L+++ L+NH+ EGEL+ + Sbjct: 23 ELITMALTHPSYAQEKNTVANNQRLEFLGDAVLNLVVAEYLYNHYGRKAEGELTKIRAKV 82 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 V + + AR ++L ++ + SI AD VE++I A+YLD G+E F Sbjct: 83 VCEDALAIFARNINLGQYLLLGRGEEMSGGRKRKSILADAVEAVIGAIYLDQGLETVQRF 142 Query: 139 VDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + + ++ ++ D K++LQE A+ Y + SGP H F V Sbjct: 143 IIRQLEELISETASGDYYDYKSKLQELVQARDKENVSYAIIEESGPAHAKVFVAGVYYRE 202 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221 A G SK+ AEQ AA +VL+ Sbjct: 203 QLLATGEGKSKKEAEQKAAQKVLQ 226 >gi|269127639|ref|YP_003301009.1| ribonuclease III [Thermomonospora curvata DSM 43183] gi|268312597|gb|ACY98971.1| ribonuclease III [Thermomonospora curvata DSM 43183] Length = 268 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 107/223 (47%), Gaps = 7/223 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + LE+ +G + + R LLE+ALTH S ++ + ERLEFLGD +LGL+++ LF + Sbjct: 27 AELERALGVSIS-RELLERALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLFRNHP 85 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ ++V+ + VAR L ++IR+ TSI AD +E+LI Sbjct: 86 DLPEGQLAKLRAAVVNMRALAGVARSLGAGAYIRLGRGEEGTGGRDKTSILADTLEALIG 145 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YL+ G++ A V + + KS + A+ + SGP Sbjct: 146 AVYLEHGLDEAAKLVHRLFDSLIDKSASLGAGLDWKTSLQELTAEEELGVPEYHVAESGP 205 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKRE 223 DH F V + G+ G SK+ AEQ AA +K Sbjct: 206 DHQKTFRATVRVGGVTYGSGEGRSKKEAEQRAAEATWHAIKEM 248 >gi|320536816|ref|ZP_08036812.1| ribonuclease III [Treponema phagedenis F0421] gi|320146325|gb|EFW37945.1| ribonuclease III [Treponema phagedenis F0421] Length = 243 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 77/219 (35%), Positives = 108/219 (49%), Gaps = 5/219 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62 +K+ G+ F N LL A H S SH ++ ++ ERLEFLGD +LGL+ ++ L+N Sbjct: 16 LLNFQKKAGFKFKNLKLLNLAFHHRSFSHIHEASFQNNERLEFLGDSVLGLVTASCLYNL 75 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EGEL+ LVS ET S +A LD+ +I + +I AD +E++ Sbjct: 76 LSDCSEGELAKTKAVLVSEETLSDIALSLDVDKYIMLGRGEEMSGGRRKKAILADAMEAI 135 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I ALYLD G +VA FV + + ++ D K+ LQE + KF + P Y V Sbjct: 136 IGALYLDSGFKVAEKFVLRIITPKIPLVRNENLHMDYKSALQELSQKKFQILPLYTVVKA 195 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDHD F V V+I SK+ A Q A Sbjct: 196 QGPDHDRTFWVEVQIHTKKYGPATGKSKKEAAQAVAELA 234 >gi|89895402|ref|YP_518889.1| hypothetical protein DSY2656 [Desulfitobacterium hafniense Y51] gi|89334850|dbj|BAE84445.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 262 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 4/208 (1%) Query: 21 SLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 L ALTH S E+ +RLEFLGD IL +++ L+ + EGEL+ Sbjct: 50 RLFTTALTHPSYLFENPQSGLENNQRLEFLGDAILDFVVAEYLYLSYPERPEGELTKMRA 109 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 ++V+ T ++ A+++ L + + + SI AD E+++ A+YL G + A Sbjct: 110 AVVNESTLARTAKKIRLGEELLLGKGEQVSGGRERPSILADAWEAIVGAVYLQYGFQEAR 169 Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 V K+ + + + + + Y++ GPDH+ RFT V + Sbjct: 170 RVVLTLLKEEIAEVAQGNYGDYKTMLQEKAQREETEVTYRILAEEGPDHNKRFTAGVFLQ 229 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G +G+ +K+ AEQ AA +VL G Sbjct: 230 GNLRGKGIGRTKKEAEQRAAQQVLDEFG 257 >gi|219669830|ref|YP_002460265.1| ribonuclease III [Desulfitobacterium hafniense DCB-2] gi|219540090|gb|ACL21829.1| Ribonuclease III [Desulfitobacterium hafniense DCB-2] Length = 262 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 4/208 (1%) Query: 21 SLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 L ALTH S E+ +RLEFLGD IL +++ L+ + EGEL+ Sbjct: 50 RLFTTALTHPSYLFENPQSGLENNQRLEFLGDAILDFVVAEYLYLSYPERPEGELTKMRA 109 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 ++V+ T ++ A+++ L + + + SI AD E+++ A+YL G + A Sbjct: 110 AVVNESTLARTAKKIRLGEELLLGKGEQVSGGRERPSILADAWEAIVGAVYLQYGFQEAR 169 Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 V K+ + + + + + Y++ GPDH+ RFT V + Sbjct: 170 RVVLTLLKEEIAEVAQGNYGDYKTMLQEKAQREETEVTYRILAEEGPDHNKRFTAGVFLQ 229 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G +G+ +K+ AEQ AA +VL G Sbjct: 230 GNLRGKGIGRTKKEAEQRAAQQVLDEFG 257 >gi|149173983|ref|ZP_01852611.1| ribonuclease III [Planctomyces maris DSM 8797] gi|148846963|gb|EDL61298.1| ribonuclease III [Planctomyces maris DSM 8797] Length = 247 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 78/218 (35%), Positives = 114/218 (52%), Gaps = 3/218 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ +GY F + LL+ LTH+S + + +S ERLEFLGD ILG ++ LF+ F + Sbjct: 14 LEECQQNLGYRFVDCELLKSCLTHTSAAKTRMDSNERLEFLGDAILGSIVCEKLFDQFPN 73 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EGEL+ +++VS TC+++ARE L FI V L + S+ A + E+LIA Sbjct: 74 APEGELTRIKSAVVSRNTCTRLAREKGLDRFIFVGKGLAMTE-NLPESLLAGMFEALIAG 132 Query: 126 LYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGGI F+D + + K+ LQ+++ KF TP Y+V GP Sbjct: 133 IYLDGGIAPVHQFLDPLIERENSKASRSVHGYNYKSLLQQYSQKKFSQTPIYEVLDEKGP 192 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 DH F V I +K+ AEQ AA L+ Sbjct: 193 DHSKFFKVTAIIGEHKYEPAWGSTKKEAEQRAAYNALR 230 >gi|24217145|ref|NP_714628.1| ribonuclease III [Leptospira interrogans serovar Lai str. 56601] gi|45655649|ref|YP_003458.1| dsRNase III [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|59798574|sp|Q75FW5|RNC_LEPIC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|59798588|sp|Q8EXX3|RNC_LEPIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|24202183|gb|AAN51643.1| ribonuclease 3 [Leptospira interrogans serovar Lai str. 56601] gi|45602620|gb|AAS72095.1| dsRNase III [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 247 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 116/223 (52%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62 L K+IG F+ A HSS + QE ERLEFLGD +LGL+ + LF Sbjct: 21 LQKLSKKIGIKFSKVEYYNTAFIHSSYKNENQEILEDNERLEFLGDSVLGLVAARSLFRK 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A EGELS + +VS + ++ +L+L+ ++ + + + + A++ ESL Sbjct: 81 YPKANEGELSRIKSRIVSTPILNSISEKLELSEYLLLGKGEKNSLGKGRRKLSANLFESL 140 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 + A+YLD G E+A F+ ++ + K RD KT+LQE++ F + P Y+ Sbjct: 141 VGAIYLDQGFEIAEKFILRHLSEFVENPEKEESVRDYKTQLQEYSQKHFKILPIYRTKSE 200 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH F VVV I A G SK++AEQ AA E+ R Sbjct: 201 SGPDHAKTFQVVVRIRDQWEASGSGVSKKSAEQNAAKELYNRI 243 >gi|158297080|ref|XP_555381.3| AGAP008087-PA [Anopheles gambiae str. PEST] gi|157015023|gb|EAL39656.3| AGAP008087-PA [Anopheles gambiae str. PEST] Length = 1404 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 101/227 (44%), Gaps = 14/227 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + E IG F + LL +A T S ++ S +RLEFLGD +L L+ S L+ HF Sbjct: 950 LTRFEDSIGVQFNHIRLLARAFTDRSIGFTNLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1009 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS+ +SLV+ T + V +L + + S+ T +AD++E+ + Sbjct: 1010 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTQYAVYSNPKADLK----TKDRADLLEAFL 1065 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA------HAKFGVTPEY 175 ALY+D G+E F + + D K++LQ+ P Y Sbjct: 1066 GALYVDKGLEYCEMFCHVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPVY 1125 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 KV +GP + ++V V G A S + AE AA + L+ Sbjct: 1126 KVIECTGPTNTRVYSVAVYFRGKRLACADGHSIQQAEMNAAKQALEN 1172 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 20/34 (58%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 + LE+ IGY F NR L+ ALTH S ++ + Sbjct: 718 LNVLERYIGYTFTNRYTLQLALTHPSYKENFGTN 751 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 57/128 (44%) Query: 33 SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD 92 + S ERLEFLGD ++ + S LF+ F +EG L+ ++V + + +A++L Sbjct: 800 TDSNITHNERLEFLGDAVVEFITSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLH 859 Query: 93 LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 L F+ + + A+ E+L+ AL LDGGIEVA Q Sbjct: 860 LEEFMLYAHGSDLCHELELRHALANCFEALMGALLLDGGIEVADRVFAYALFQEDDTLRG 919 Query: 153 FRRDAKTE 160 + + Sbjct: 920 IWVNYPSH 927 >gi|145588593|ref|YP_001155190.1| ribonuclease III [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046999|gb|ABP33626.1| RNAse III [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 263 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 112/226 (49%), Gaps = 9/226 (3%) Query: 1 MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIST 57 M+A + +TL++R+GY F LL +ALTH S S ++ ERLEFLGD IL +++ Sbjct: 1 MNARAVIETATLQERLGYVFKKTELLNQALTHRSHSK---KNNERLEFLGDSILNCVVAD 57 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LL+ + EG+LS +LV + ++A+ L L+ +R+ K SI AD Sbjct: 58 LLYERYSDLDEGDLSRVRANLVKQQALYEIAQTLLLSDHLRLGEGELKSGGFRRPSILAD 117 Query: 118 VVESLIAALYLDGGIE--VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 +E++ A++LDGG + + +D KT LQE P Y Sbjct: 118 TLEAVTGAIFLDGGFDAAKDCLRKLYSVILAQVDPKTLGKDDKTLLQECLQGYQLPLPTY 177 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220 VT +G H+ +F V I L + +G S+RAAEQ AA L Sbjct: 178 NVTGTTGAAHNQQFEVECLIPSLKVSVKGDGASRRAAEQSAAKIAL 223 >gi|317484890|ref|ZP_07943780.1| ribonuclease III [Bilophila wadsworthia 3_1_6] gi|316923872|gb|EFV45068.1| ribonuclease III [Bilophila wadsworthia 3_1_6] Length = 233 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 5/226 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLF 60 + L+ RIGY F + SLL A+THSS ++ + ERLEFLGD +L + +S LF Sbjct: 1 MTLDVLQDRIGYRFKDESLLVLAVTHSSWANEHSAGNAHNERLEFLGDAVLEIAVSAQLF 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+EGEL+ +SLV+ T + +AR+L L +R++ S+ +D +E Sbjct: 61 ARFPDAREGELTRLRSSLVNEATLAVIARKLHLDDCLRLARGEENQGGRQRDSLLSDAME 120 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ +++DGGIE A V++ + K+ R+D KT+LQE P Y + Sbjct: 121 AVFGGVFVDGGIEKARAVVERLYTDLWPKNATKVRRKDFKTKLQEATQRISKGLPVYALE 180 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP+H F+V V++ + + AEQ AA L G Sbjct: 181 DSYGPEHAKIFSVRVDLPDGRQFRASGPGLKRAEQEAAHVALVALG 226 >gi|307823639|ref|ZP_07653868.1| ribonuclease III [Methylobacter tundripaludum SV96] gi|307735624|gb|EFO06472.1| ribonuclease III [Methylobacter tundripaludum SV96] Length = 227 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 113/224 (50%), Gaps = 6/224 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L K++G F N L ALTH S S + ERLEFLGD ILG +I+ LF F A Sbjct: 6 EELCKKLGLKFNNPQLFTMALTHRSAS---SNNNERLEFLGDSILGFVIAQKLFELFPGA 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LS SLV+ + +++AR+ L ++ + S K SI +D VE++I AL Sbjct: 63 CEGVLSRLRASLVNQGSLAELARKHQLGDYLLLGSGELKSGGFRRDSILSDAVEAIIGAL 122 Query: 127 YLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 Y D G++ + ++ + + ++ +++D KT+LQE ++ P+Y + SG Sbjct: 123 YNDQGMDASQQWILQLFAEKLKSLSLDNWQKDPKTQLQELMQSRKMELPDYTLMTMSGLA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGIWT 227 H+ F V P G S++ AEQ AA +L+ T Sbjct: 183 HEQTFKVKCTTPLTAEPCIGTGNSRKKAEQSAAELMLELLNKDT 226 >gi|311742943|ref|ZP_07716751.1| ribonuclease III [Aeromicrobium marinum DSM 15272] gi|311313623|gb|EFQ83532.1| ribonuclease III [Aeromicrobium marinum DSM 15272] Length = 232 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 95/220 (43%), Gaps = 3/220 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 L +G + LL ALTH S ++ + ERLEFLGD +LGL+++ LF Sbjct: 2 DALRDVLGVPDLDPELLRHALTHRSYAYENGQIPNNERLEFLGDSVLGLVVTDSLFRAHP 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ ++VSA+ + VAR L + +R+ SI +D VE++I Sbjct: 62 DLPEGQLAKLRAAVVSAKALAVVARTLGIGDVVRLGRGEETTGGRDKASILSDTVEAVIG 121 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A++L GIE A V + + + + A G+ +GP Sbjct: 122 AVFLQFGIERAAEVVHRVFDPVMADAASLGAALDWKTSLQEMAAHHGLGVPRYHLEGTGP 181 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH FT V + A G SK+ AEQ A + Sbjct: 182 DHARSFTAEVHLGERVFAGGAGRSKKEAEQEVAEIAWRTL 221 >gi|33593415|ref|NP_881059.1| ribonuclease III [Bordetella pertussis Tohama I] gi|33597819|ref|NP_885462.1| ribonuclease III [Bordetella parapertussis 12822] gi|33602721|ref|NP_890281.1| ribonuclease III [Bordetella bronchiseptica RB50] gi|81424808|sp|Q7VW39|RNC_BORPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|81426476|sp|Q7W5J6|RNC_BORPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|81429935|sp|Q7WD32|RNC_BORBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|33572771|emb|CAE42703.1| ribonuclease III [Bordetella pertussis Tohama I] gi|33574248|emb|CAE38580.1| ribonuclease III [Bordetella parapertussis] gi|33577163|emb|CAE35720.1| ribonuclease III [Bordetella bronchiseptica RB50] gi|332382824|gb|AEE67671.1| ribonuclease III [Bordetella pertussis CS] Length = 256 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 115/224 (51%), Gaps = 6/224 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+A+ +TLE R+ + F +++LLE+ALTH S ERLEFLGD +L +++ +LF Sbjct: 1 MTAMSLATLETRLDHRFGDKALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG+LS +LV + + +A+ LDL+ ++R+ K SI AD VE Sbjct: 58 ERYGKLDEGDLSRLRANLVKQASLADIAQRLDLSQYLRLGEGELKSGGFRRPSILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 +L A++LD G E A + + ++ +DAKT LQE+ + P+Y V Sbjct: 118 ALFGAVFLDAGFEAARRVIVRQYQPVMAHVDPKTLGKDAKTLLQEFLQGRKLALPQYTVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H +F V I L S+RAAEQ AA L+ Sbjct: 178 ATHGAAHSQQFEVECAIPALEIKIVAPGASRRAAEQSAAKVALE 221 >gi|146329595|ref|YP_001209601.1| ribonuclease III [Dichelobacter nodosus VCS1703A] gi|146233065|gb|ABQ14043.1| ribonuclease III [Dichelobacter nodosus VCS1703A] Length = 233 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 109/219 (49%), Gaps = 6/219 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY+F N LL++ALTH S S + ER E+LGD +L +IS L+ Sbjct: 6 KINWQLLEHALGYSFQNPELLQRALTHRSFS---ADHNERFEYLGDALLETVISVALYRR 62 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + + EG+L+ ++V + + + +A++LDL ++R+ S K SI AD VE++ Sbjct: 63 YPESPEGDLTRLRAAIVKSSSLAVIAKQLDLGRYLRLGSGELKSGGKRRESILADAVEAI 122 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 IAA+YLD + +D KT LQE+ ++ P Y++ Sbjct: 123 IAAVYLDSDFYRCEQITLALFAPAIAALPDVEALKDPKTRLQEYLQSRDLPLPVYELVEE 182 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GP+H FT+ + S S++ AEQ AA + Sbjct: 183 KGPEHAKIFTISAK-SERFCTTATASSRKKAEQAAAELL 220 >gi|311898536|dbj|BAJ30944.1| putative ribonuclease 3 [Kitasatospora setae KM-6054] Length = 269 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 111/225 (49%), Gaps = 4/225 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 + Y LE R+GY+ R+LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 25 STEYDVLEGRLGYSLE-RALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLY 83 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG L+ ++V++ ++V R LDL +FIR+ +SI AD VE Sbjct: 84 RLHPEVAEGTLAKLRAAVVNSRALAEVGRGLDLGAFIRLGKGEEGTGGRDKSSILADTVE 143 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTF 179 ++I A YLD G++ A FV + + +S + + A G+ V Sbjct: 144 AVIGATYLDQGLDAATEFVHRLFDPLIAESAQLGAGLDWKTSLQELTAAVGLGVPEYVVT 203 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGPDH+ FT ++G G SK+ AEQ AA + Sbjct: 204 ESGPDHEKTFTAAARVAGQDHGSGSGRSKKEAEQKAAESAWRAIK 248 >gi|294340985|emb|CAZ89380.1| Ribonuclease III (RNase III) [Thiomonas sp. 3As] Length = 276 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 6/221 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LE R+GY F +R L E+ALTH S + ERLEFLGD +L L + L++ Sbjct: 3 TALETRLGYVFRDRKLFERALTHRSFG---ADHNERLEFLGDSVLNLSAAAWLYHQAARQ 59 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS +LV AE ++VAR +DL F+R+ + + SI AD VE+L+ A+ Sbjct: 60 DEGQLSRLRAALVRAEALAEVARAIDLGRFLRLGEGELQSGGAQRESILADTVEALLGAI 119 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YL+ G + A + + + R+DAKT+LQE+ + P Y V G Sbjct: 120 YLEAGFDTAQEVMRRLFAPLMDTLDADVVRKDAKTQLQEFLQGQRLPLPSYAVLDVRGAA 179 Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224 H +F V + L +G S+R AEQ AA +++R G Sbjct: 180 HQQQFKVECAVEALGLKVEGEGDSRRRAEQDAATRMIERIG 220 >gi|296136816|ref|YP_003644058.1| ribonuclease III [Thiomonas intermedia K12] gi|295796938|gb|ADG31728.1| ribonuclease III [Thiomonas intermedia K12] Length = 276 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 6/221 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LE R+GY F +R L E+ALTH S + ERLEFLGD +L L + L++ Sbjct: 3 TALETRLGYVFRDRKLFERALTHRSFG---ADHNERLEFLGDSVLNLSAAAWLYHQAARQ 59 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS +LV AE ++VAR +DL F+R+ + + SI AD VE+L+ A+ Sbjct: 60 DEGQLSRLRAALVRAEALAEVARAIDLGRFLRLGEGELQSGGAQRESILADTVEALLGAI 119 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YL+ G + A + + + R+DAKT+LQE+ + P Y V G Sbjct: 120 YLEAGFDTAQEVMRRLFAPLMDTLDADVVRKDAKTQLQEFLQGQRLPLPSYAVLDVRGAA 179 Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224 H +F V + L +G S+R AEQ AA +++R G Sbjct: 180 HQQQFKVECAVEALGLKVEGEGDSRRRAEQDAATRMIERIG 220 >gi|29654794|ref|NP_820486.1| ribonuclease III [Coxiella burnetii RSA 493] gi|161830652|ref|YP_001597345.1| ribonuclease III [Coxiella burnetii RSA 331] gi|30581027|sp|P51837|RNC_COXBU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043306|sp|A9N942|RNC_COXBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|29542062|gb|AAO91000.1| ribonuclease III [Coxiella burnetii RSA 493] gi|161762519|gb|ABX78161.1| ribonuclease III [Coxiella burnetii RSA 331] Length = 233 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 115/225 (51%), Gaps = 7/225 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + L +R+G+ F N LL+ ALTH S S ++ ERLEFLGD +LG +I++ L+ Sbjct: 1 MN--HLNKLMERLGHQFNNLELLKIALTHCS---SGADNNERLEFLGDSVLGFIIASELY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 A+EG+LS S+V+ + +Q++ +L + ++++ +K SI AD +E Sbjct: 56 QRRPQAREGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179 +++ A+Y+D G+E V ++ +R K + L + + Sbjct: 116 AIVGAIYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVK 175 Query: 180 RSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223 +G H FTV + GL +G++ ++R AEQ+AA L+ Sbjct: 176 ITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLELL 220 >gi|156553364|ref|XP_001601748.1| PREDICTED: similar to ribonuclease iii [Nasonia vitripennis] Length = 1381 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 6/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F++ LL +A T S ++ S +RLEFLGD +L L++S L+ Sbjct: 1019 KLTKFEEGIGVEFSHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1078 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T + V +L + + + + + + +L Sbjct: 1079 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELKTKDRADLLEAFLGAL 1138 Query: 123 IA----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + + + K + P YKV Sbjct: 1139 YVDKGLLHCQVFCNVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPVYKVI 1198 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP + +TV V G A+ S + AE +A E L++ Sbjct: 1199 ECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEK 1242 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE+ + Y F NR LL+ ALTH S ++ + Sbjct: 788 LDMLEQTLDYKFKNRYLLQLALTHPSYRENFGTN 821 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 57/122 (46%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ERLEFLGD ++ L S LF+ F +EG L+ ++V + + +A++L+L ++ Sbjct: 876 HNERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEQYML 935 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158 + + A+ E+L+ AL+LDGGI +A T + + + Sbjct: 936 YAHGSDLCHDLELRHAMANCFEALMGALFLDGGIRIADTVFGETLFKNESDLLNIWVNYP 995 Query: 159 TE 160 Sbjct: 996 KH 997 >gi|28199176|ref|NP_779490.1| ribonuclease III [Xylella fastidiosa Temecula1] gi|182681907|ref|YP_001830067.1| ribonuclease III [Xylella fastidiosa M23] gi|32129967|sp|Q87C06|RNC_XYLFT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238691044|sp|B2I604|RNC_XYLF2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28057282|gb|AAO29139.1| ribonuclease III [Xylella fastidiosa Temecula1] gi|182632017|gb|ACB92793.1| Ribonuclease III [Xylella fastidiosa M23] gi|307578162|gb|ADN62131.1| ribonuclease III [Xylella fastidiosa subsp. fastidiosa GB514] Length = 227 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 115/226 (50%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + + S ++RIGY F + SLL +AL H S ERLEFLGD ++ LLI+ LF Sbjct: 1 MISSKASDYQQRIGYVFTDPSLLLQALRHRSAG---TPHNERLEFLGDSVVNLLIAEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + A EG L+ + LV + + +AR + L + + K SI AD VE Sbjct: 58 QRWPRADEGALTRARSELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD + T V +++ AL GK +D KT LQEW A+ P Y++ Sbjct: 118 AVIAAIYLDADLATCRTVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELI 177 Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 F SG H F V + L +G S+R AEQ AA+ + + Sbjct: 178 FESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAASHAIDQL 223 >gi|283781424|ref|YP_003372179.1| ribonuclease III [Pirellula staleyi DSM 6068] gi|283439877|gb|ADB18319.1| ribonuclease III [Pirellula staleyi DSM 6068] Length = 273 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 3/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + E+R+GY F ++ LL ALTH+S + S ERLEFLGD ILG+ + +L+ F Sbjct: 45 LARCERRLGYVFNSKPLLRSALTHASGAEHRLASNERLEFLGDAILGVYVCEMLYRQFPD 104 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ + +VS +TC++V+ L L F+ + + + S+ ADV ESLIAA Sbjct: 105 YLEGDLTKVKSVVVSRQTCAKVSEALGLQEFLILGKGMS-SSPNVPPSLLADVFESLIAA 163 Query: 126 LYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGG + A F++ Y +G+ + K+ LQ++A + G TP Y + GP Sbjct: 164 IYLDGGEQAARQFINNYIGPEVELAAAGELGGNYKSLLQQFAQRECGNTPTYHLLDEKGP 223 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH F + + G +K+ AEQ AA L Sbjct: 224 DHSKCFKISASVGGKKYQAAWGRNKKEAEQRAANNALAEIK 264 >gi|254423554|ref|ZP_05037272.1| ribonuclease III [Synechococcus sp. PCC 7335] gi|196191043|gb|EDX86007.1| ribonuclease III [Synechococcus sp. PCC 7335] Length = 228 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 68/214 (31%), Positives = 98/214 (45%), Gaps = 6/214 (2%) Query: 16 AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N +L ++A+TH S ++ E ERLEFLGD IL L + LF F EGEL+ Sbjct: 15 TFTNSALWQQAMTHKSFANEQPTATEHNERLEFLGDAILTFLSAEYLFVRFPKQSEGELT 74 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 ++LV + A+ L L ++R+ K+ + E+LI A +LD Sbjct: 75 PMRSALVDQSQLHRFAQGLKLDEYLRLGKGAEKEGARKSARLLCSAFEALIGAYFLDQEH 134 Query: 133 E---VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 V + A +D KT LQEWA G PEY GPDH F Sbjct: 135 NLQLVKDYITPIFESAIAPDVEAGVKDDKTRLQEWAQKTTGSVPEYVEISTLGPDHAKEF 194 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + V+I G + +G SK+ A+++AA L+ Sbjct: 195 VIEVQIGGKSYGRGSGRSKQKAQKLAARSTLEML 228 >gi|227504755|ref|ZP_03934804.1| ribonuclease III [Corynebacterium striatum ATCC 6940] gi|227198605|gb|EEI78653.1| ribonuclease III [Corynebacterium striatum ATCC 6940] Length = 256 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 4/224 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 A+ ++ L K +G A+ +L ALTH S ++ + ERLEFLGD +LGL +++ L+ Sbjct: 19 AVDHAPLLKSLGVELADENL-RLALTHRSFANENGYLPNNERLEFLGDAVLGLSVASKLY 77 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + S E ++S S+VS S +ARE++L I + + SI AD E Sbjct: 78 EQYPSRPESDISKMRASIVSRYGLSDIAREIELGQHILLGKGEQSTGGRDKDSILADTTE 137 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++ A+Y G E A + + ++++ + R + P T Sbjct: 138 AIFGAIYRQYGFETARDVILRLFQKKIDNAVVSGRHMDWKTNLQELCAELKAPMPVYTAT 197 Query: 181 S-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 S GP+HD FT V ++GL G+ +K+ AEQ AA E + Sbjct: 198 STGPEHDQTFTAVATVAGLTVGNGVGHNKKLAEQQAAQEACQTL 241 >gi|315640113|ref|ZP_07895235.1| ribonuclease III [Enterococcus italicus DSM 15952] gi|315484090|gb|EFU74564.1| ribonuclease III [Enterococcus italicus DSM 15952] Length = 233 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 5/214 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M ++L++ F LLE+A THSS + ++ ERLEFLGD +L LL+S Sbjct: 4 MDNQFVTSLKENYQIVFQEIGLLEQAFTHSSYVNEHRNMALSDNERLEFLGDAVLELLVS 63 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ F EG+L+ S+V ++ ++ ARE +IR+ S+ Sbjct: 64 QYLYRKFPEIPEGKLTKLRASMVREDSLAEFARECGFDQYIRLGKGEENSGGRQRNSLLC 123 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175 D+ ES + ALYLD +E F+ K + D KT+LQE V +Y Sbjct: 124 DLFESFLGALYLDQELEAVNQFLKKVVFPKVDAGAFSHEMDHKTKLQEVLQRAGDVFIDY 183 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 ++T GP H+ F V G +G SK+ Sbjct: 184 RLTNEEGPAHERVFWTEVYCDGQLIGRGQGKSKK 217 >gi|228474955|ref|ZP_04059683.1| ribonuclease III [Staphylococcus hominis SK119] gi|228270940|gb|EEK12328.1| ribonuclease III [Staphylococcus hominis SK119] Length = 243 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ K +G ++ + + ++A +HSS + + ERLEFLGD +L L +S LF Sbjct: 15 QFDKKMKMLGLSYTHLDVYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + + EG L+ ++V + A +++L I + K S+ +D E Sbjct: 75 DKYPNLPEGNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKTGGRTRPSLVSDAFE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G+EV F K + D KT+ QE+ H++ Y + Sbjct: 135 AFIGALYLDQGLEVVWKFAQKVIFPYVEHNELIGVVDFKTQFQEYIHSQSKGDVTYHLIK 194 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H FT V + A A+G +K+ +EQ AA + Sbjct: 195 EEGPAHHRLFTSEVILENKAIAKGQGRTKKESEQKAAESAYHKL 238 >gi|189499162|ref|YP_001958632.1| Ribonuclease III [Chlorobium phaeobacteroides BS1] gi|189494603|gb|ACE03151.1| Ribonuclease III [Chlorobium phaeobacteroides BS1] Length = 271 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65 LE +G++ + L ALTH SI H + +S +RLEFLGD +L L+IS LL+ F Sbjct: 43 LEDILGFSPIDEKLYVIALTHRSIVHDHPEASDSNQRLEFLGDAVLDLIISELLYTVFPE 102 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + EG+LS +V+ ++ + A ++ L + + K TS AD E+LI A Sbjct: 103 SDEGKLSSNRAKIVNRKSLAGFAGKISLGEHLLIGETADKINIQTSTSSLADAFEALIGA 162 Query: 126 LYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 LYLD G+E F+ ++ K + K+ L E+ + P Y V G Sbjct: 163 LYLDKGLEETRKFIMRHVAGHVDIKKIDTVENNYKSRLIEYTQSCQIAPPVYTVVSEEGA 222 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +H+ FT+ V +G K+ AEQ AA E L+ Sbjct: 223 EHEKLFTIEVSCDNRPLGKGSARRKKDAEQTAAREALEEL 262 >gi|319943505|ref|ZP_08017787.1| ribonuclease III [Lautropia mirabilis ATCC 51599] gi|319743320|gb|EFV95725.1| ribonuclease III [Lautropia mirabilis ATCC 51599] Length = 247 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 112/219 (51%), Gaps = 6/219 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 TLE R+GY F + +LL +ALTH S ++ ERLEFLGD +L +++LL+ F + Sbjct: 26 TLEGRLGYRFQSEALLVQALTHRS---HGRQHNERLEFLGDSVLNCAVASLLYARFADSP 82 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG LS +LV + +A L L + + RK SI AD VE+L+ A++ Sbjct: 83 EGALSRLRANLVKQDPLHDIACGLSLPDALILGEGERKSGGHRRPSILADAVEALLGAIF 142 Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 L+ G A V++ ++ A+ + +DAKT LQE+ P Y+V G H Sbjct: 143 LESGFAAAAGVVERLYQPLLDAIDPHELGKDAKTRLQEYLQGHRLPLPRYQVVATHGQAH 202 Query: 186 DPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 D RF V ++ +G S+R AEQVAA L+ Sbjct: 203 DQRFDVECQLDKPKLSFEGSGESRRKAEQVAARAALEHL 241 >gi|157119283|ref|XP_001653338.1| ribonuclease iii [Aedes aegypti] gi|108875392|gb|EAT39617.1| ribonuclease iii [Aedes aegypti] Length = 1374 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 103/227 (45%), Gaps = 14/227 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + E IG F + LL +A T S ++ S +RLEFLGD +L L+ S L+ HF Sbjct: 945 LTKFEDAIGVNFNHIRLLARAFTDRSIGFTNLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1004 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS+ +SLV+ T + V +L + ++ S+ T +AD++E+ + Sbjct: 1005 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTTYAVYSNPKADLK----TKDRADLLEAFL 1060 Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA------HAKFGVTPEY 175 ALY+D G+E TF + + D K++LQ+ P Y Sbjct: 1061 GALYVDKGLEHCETFCHVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPIY 1120 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 KV +GP + +TV V G A S + AE AA + L+ Sbjct: 1121 KVIECNGPTNTRVYTVAVYFRGKRLACSNGHSIQQAEMNAAKKALEN 1167 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 71/210 (33%), Gaps = 55/210 (26%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES-------------------------- 39 LE+ I Y F NR L+ ALTH S ++ + Sbjct: 713 LDVLEEHIDYKFINRYTLQLALTHPSYKENFGTNPDHARNSLTNCGIRQPEYGDRKIHFM 772 Query: 40 --------------------YE---------RLEFLGDRILGLLISTLLFNHFDSAKEGE 70 YE RLEFLGD ++ + S LF+ F +EG Sbjct: 773 NTRKRGINTLISIMSRFGKEYETDSNITHNERLEFLGDAVVEFITSIHLFHMFPDLEEGG 832 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ ++V + + +A+ L L F+ + + A+ E+L+ AL LDG Sbjct: 833 LATYRAAIVQNQHLAVLAKTLHLEEFMLYAHGSDLCHELELRHALANCFEALMGALLLDG 892 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 GIE A Q + Sbjct: 893 GIETADRVFAYALFQEDTNLRNIWVNYPPH 922 >gi|323359692|ref|YP_004226088.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037] gi|323276063|dbj|BAJ76208.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037] Length = 230 Score = 128 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 96/225 (42%), Gaps = 5/225 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 + + S L +++G + LL ALTH S ++ ERLEFLGD +LG ++ L Sbjct: 4 NNVERSALTEKLGVDI-DPELLSLALTHRSFAYENGGIPHNERLEFLGDSVLGQAVTVRL 62 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F EG+L+ R +VS ++VAR + L +R+ SI AD + Sbjct: 63 FTRHPDLDEGQLAKRRAGVVSTIALAEVARGIGLGQHVRLGRGEILTGGHDKDSILADTM 122 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A YL G + A V + + ++ + A+ V Sbjct: 123 EAIIGATYLSAGPDAATAMVLRLVEPLMADPARYGAAMDPKTSLQEIAARLSVPAPTYSV 182 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GPDHD RFT V + G SK+ AE AA + Sbjct: 183 EAAGPDHDRRFTATVRVGD-VVTTGTGSSKKQAEMAAALTAWREL 226 >gi|223937314|ref|ZP_03629220.1| Ribonuclease III [bacterium Ellin514] gi|223894099|gb|EEF60554.1| Ribonuclease III [bacterium Ellin514] Length = 231 Score = 128 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 5/210 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61 + L+ +GYAF LL+ ALTH S++H + + +RLEFLGD +L L+++ L++ Sbjct: 3 DLNNLQTALGYAFRKIELLQLALTHPSVAHEQRTPVQHNQRLEFLGDAVLQLVLTHELYS 62 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG L+ LV+ ++ R L+L + + +S S AD E+ Sbjct: 63 KFPDFGEGPLTKARAKLVNRRALAEQGRALNLGAHLILSRGEEAHGGRLRPSALADTFEA 122 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A++LDGG E F+ + + + K ELQE AK P+Y V Sbjct: 123 LLGAIFLDGGFEAVEKFLLARFHDMLAEISALPALENPKGELQELLQAKSSEAPQYNVVS 182 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SGPDHD F +V+ +G+ A G SK+ Sbjct: 183 TSGPDHDRVFECIVQHNGVELAHGRGKSKK 212 >gi|330993372|ref|ZP_08317307.1| Ribonuclease 3 [Gluconacetobacter sp. SXCC-1] gi|329759402|gb|EGG75911.1| Ribonuclease 3 [Gluconacetobacter sp. SXCC-1] Length = 258 Score = 128 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 123/233 (52%), Gaps = 15/233 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--------------YERLEFLGDRIL 51 LE +GY F LL +ALTH S +H + ERLEF+GDR+L Sbjct: 11 IRRLEACLGYHFTRPELLLRALTHRSAAHERSGNRRTRQNVATRGAGSNERLEFIGDRVL 70 Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 GL+++ L F + +EG L R LVS ++VA + L S + V+ + M Sbjct: 71 GLVMAEWLLERFPTEQEGALGPRHAHLVSRTVLAEVAHAMALQSALDVAEHEARAGVRQM 130 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 ++ AD VE+++ A+YLDGG++ A FV + W+ + + +D KT LQEW + Sbjct: 131 ANVLADAVEAILGAIYLDGGLDPARAFVRRMWQDAIVAQARPPKDPKTALQEWVLGRGLP 190 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P Y+V GP H PRF + V+ G QG+ SKRAAE AAA++L++ G Sbjct: 191 LPRYRVVSAEGPSHAPRFVIAVDAQGKT-GQGVAGSKRAAESDAAADLLRQLG 242 >gi|332305561|ref|YP_004433412.1| ribonuclease III [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172890|gb|AEE22144.1| ribonuclease III [Glaciecola agarilytica 4H-3-7+YE-5] Length = 227 Score = 128 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 115/228 (50%), Gaps = 7/228 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + Y L K++GY F + + L ALTH S+ ERLEFLGD +LGL+I+ L Sbjct: 1 MQLIDPYKPLYKKLGYEFQDPNNLTIALTHRSVG---ANHNERLEFLGDAVLGLVIAKAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F EG L+ +SLV +T ++VARE L + + K SI AD V Sbjct: 58 FERFPKQPEGNLTRMRSSLVKGDTLAEVAREFALGDLLLLGPGELKSGGHRRDSILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+Y + G++ + ++ +R +D KT LQE+ + PEY+V Sbjct: 118 EAIIGAIYQEVGMQGCEPLILAWFAKRIEALNPDATPKDDKTRLQEYLQGRQLPLPEYEV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREG 224 SG HD FTV ++GL P G S+R AEQ A + L+ Sbjct: 178 IDISGKSHDQTFTVKCTVAGLNSPIIGRGKSRRRAEQRTAKQALENLK 225 >gi|331703478|ref|YP_004400165.1| ribonuclease III [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802033|emb|CBW54187.1| Ribonuclease III [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 232 Score = 128 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 6/230 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + ++ N L +ALTH+S ++ ++ SY+RLEFLGD IL + +S LF Sbjct: 1 MNIKNFFEKYNIKINNEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFF 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ EGEL+ S V ET +VA++++L + +++ SI ADV E+ Sbjct: 61 NYSKLSEGELTRLRASTVREETLFRVAKDINLGALVKLGHGEYITKGYEKPSILADVFEA 120 Query: 122 LIAALYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 L AA+YLD + + KY K + ++ + + + + + Sbjct: 121 LTAAIYLDQKEDGLVTWLDQTLFKYIKDSNFINDTKDFKSELQELLQSEKRSDLKYIIEK 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 ++ +TV V ++G G SK+ AEQ AA++ L + T Sbjct: 181 EDFFANENKILYTVSVNLNGQKFGVGKGFSKQEAEQNAASDCLSKLKKPT 230 >gi|288560534|ref|YP_003424020.1| ribonuclease III Rnc [Methanobrevibacter ruminantium M1] gi|288543244|gb|ADC47128.1| ribonuclease III Rnc [Methanobrevibacter ruminantium M1] Length = 232 Score = 128 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 63/217 (29%), Positives = 94/217 (43%), Gaps = 2/217 (0%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + + + L E A THSS S + YERLEFLGD +L +L S L N Sbjct: 2 DILNKFDIVPNDMELYETAFTHSSYASKHHLNDYERLEFLGDSVLNMLTSEFLQNMHPDF 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ + V + E L ++++ + + + SI ADV ES + A+ Sbjct: 62 GEGKLTKLRANYVCQNALIVYSHEFGLDKCVKLNLEDNALTDNEVISITADVFESFLGAI 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 YLD GI F+ F D K+ ++E+ A + G HD Sbjct: 122 YLDQGISKCKEFLTITVFPYIENEQIFFHDYKSTIKEYGDAIDKEITYE-LIEEHGAPHD 180 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F + + I G+ G+ SK+ AEQVAA +K Sbjct: 181 KTFVMKILIDGVDFGHGVGKSKKEAEQVAACNAIKTL 217 >gi|153816163|ref|ZP_01968831.1| hypothetical protein RUMTOR_02411 [Ruminococcus torques ATCC 27756] gi|317500483|ref|ZP_07958707.1| ribonuclease III [Lachnospiraceae bacterium 8_1_57FAA] gi|331089416|ref|ZP_08338315.1| ribonuclease III [Lachnospiraceae bacterium 3_1_46FAA] gi|145846498|gb|EDK23416.1| hypothetical protein RUMTOR_02411 [Ruminococcus torques ATCC 27756] gi|316898238|gb|EFV20285.1| ribonuclease III [Lachnospiraceae bacterium 8_1_57FAA] gi|330404784|gb|EGG84322.1| ribonuclease III [Lachnospiraceae bacterium 3_1_46FAA] Length = 228 Score = 128 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 109/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M + LE++IGY F N S LE+A+ HSS ++ ++ ERLEFLGD +L L+ S Sbjct: 1 MHK-KLKELEQKIGYRFRNFSFLEQAMMHSSYTNEHRMEKYRCNERLEFLGDAVLELISS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF EGEL+ S+V ++ + AR++DL S++ + F S+ + Sbjct: 60 EFLFRQSPKVPEGELTKTRASMVCEQSLAMCARDIDLGSYLLLGKGEEVTGGRFRDSVTS 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D +E+LI A+YLDGG + + K D+KT LQE A+ EY Sbjct: 120 DALEALIGAIYLDGGF-TNAKEFIHRFVLTDQEDKKLFYDSKTILQEIVQAEKLGEIEYH 178 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + GPDH+ F+V + I G + +G +K+ Sbjct: 179 LIGEEGPDHNKSFSVELTIRGRSYGKGKGRTKK 211 >gi|38234119|ref|NP_939886.1| ribonuclease III [Corynebacterium diphtheriae NCTC 13129] gi|81564732|sp|Q6NGH3|RNC_CORDI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|38200381|emb|CAE50069.1| ribonuclease III [Corynebacterium diphtheriae] Length = 249 Score = 128 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 62/221 (28%), Positives = 101/221 (45%), Gaps = 4/221 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 ++ + L +G R LL ALTH S ++ + ERLEFLGD +LGL ++ L Sbjct: 19 ESVDHQPLIDALGVDIP-RELLVLALTHRSFANENGMLPNNERLEFLGDSVLGLSVAGQL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S+ E ++S S+VS + +ARE++L I + + SI AD Sbjct: 78 YQQYTSSPESDISKMRASIVSRYGLADIAREINLGQHILLGKGEQLHDGRSKDSILADTT 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+L+ A+YL G E+A V + +K + + + T Sbjct: 138 EALLGAIYLAHGFEIARDTVLRLFKHKIDTASATGLHQDWKTTLQERLAERNLEMPTYTS 197 Query: 180 R-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +GP+H+ FT V + G G+ +K+ AEQ AA + Sbjct: 198 TVTGPEHEQTFTAEVAVHGTVLGTGVGTNKKLAEQAAAHKA 238 >gi|323137544|ref|ZP_08072621.1| ribonuclease III [Methylocystis sp. ATCC 49242] gi|322397170|gb|EFX99694.1| ribonuclease III [Methylocystis sp. ATCC 49242] Length = 234 Score = 128 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 89/207 (42%), Positives = 125/207 (60%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE+ +G+ FA++SLL ALTH S S ESYERLEFLGDR+LGL ++ +L+ Sbjct: 5 KVDLAALEESVGHRFADQSLLRWALTHVSASSQRPESYERLEFLGDRVLGLAVAHMLYEA 64 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGELS R +LV ETC++VA + ++R+ + +I DV E++ Sbjct: 65 FPGESEGELSRRLAALVRKETCAEVAEIWGVGPYMRLGEGEAQTGGRKKRAILGDVCEAI 124 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I A++LDGG + AG V + + L++G+ RDAKT LQEWA A+ P Y++ RSG Sbjct: 125 IGAVFLDGGADAAGRVVRAGFGPKMLEAGRDLRDAKTALQEWAQARRLPPPRYRLIARSG 184 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDH P F + V+I G A G SKR Sbjct: 185 PDHAPSFEMAVDIEGFESAGGAGASKR 211 >gi|82702876|ref|YP_412442.1| ribonuclease III [Nitrosospira multiformis ATCC 25196] gi|82410941|gb|ABB75050.1| RNAse III [Nitrosospira multiformis ATCC 25196] Length = 230 Score = 128 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 75/220 (34%), Positives = 110/220 (50%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L +++GY F LL +ALTH S S ERLEFLGD +L ++ L+F+HF Sbjct: 11 AALCRKLGYTFRRPELLRQALTHRSHS---IPHNERLEFLGDAVLNCAVAGLIFHHFPDL 67 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LS +LV+ + +++A+ L+L IR K SI AD +E++I A+ Sbjct: 68 SEGSLSRIRANLVNQKMLAELAQTLELGKLIRFGEGELKSGGDKRPSILADALEAVIGAI 127 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G E A V+ + L + +D KT LQE+ ++ P Y V G Sbjct: 128 YLDAGFEQAEKTVENLFIPSLGELNTHALGKDPKTLLQEYLQSRKLALPRYAVVATRGEA 187 Query: 185 HDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 H +F V IS G S+R+AEQ AA + ++ Sbjct: 188 HQQQFQVECVISRPQIRTLGEGTSRRSAEQHAARQAYEQL 227 >gi|108762302|ref|YP_631944.1| ribonuclease III [Myxococcus xanthus DK 1622] gi|123074286|sp|Q1D5X9|RNC_MYXXD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|108466182|gb|ABF91367.1| ribonuclease III [Myxococcus xanthus DK 1622] Length = 260 Score = 128 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 117/230 (50%), Gaps = 7/230 (3%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 MS + R LE R+G +F+ +ALTH + + ++ +RLEFLGD ++ L + Sbjct: 10 MSPSERVQLLESRLGLSFSRMETALEALTHKTYVNETRDKELKDNQRLEFLGDSVVNLAV 69 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L EG+L+ +V+ + ++VAR + L + + S+ Sbjct: 70 SHRLMARCPGLPEGDLTKMRARVVNEDGLARVARTIPLGDLLLLGRGELMSGGREKNSVL 129 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTP 173 AD +E++ A++L G++ A T VD+Y+ + SG+ R D KT LQE AH + + P Sbjct: 130 ADALEAVFGAVFLTSGLDAAVTLVDRYFADLLDEVSSGQGRLDYKTLLQEMAHERLKLQP 189 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+V SGP+H F V + + A A+ SK+ AEQ AA L++ Sbjct: 190 RYRVVSESGPEHSKVFEVELMLGETAFARATGRSKKEAEQSAAQATLEKL 239 >gi|209884975|ref|YP_002288832.1| ribonuclease III [Oligotropha carboxidovorans OM5] gi|209873171|gb|ACI92967.1| ribonuclease III [Oligotropha carboxidovorans OM5] Length = 288 Score = 128 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 87/204 (42%), Positives = 120/204 (58%), Gaps = 3/204 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH 62 +E+RIG+ F N +LL+ ALTH S S + +SY+RLEFLGD +LGL++S +L+ Sbjct: 60 LREIEQRIGHTFKNPNLLKTALTHVSALKPSQNRTDSYQRLEFLGDHVLGLIVSDMLYGA 119 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A EGE+S R LV E C VA+ L L I++ + SI D+ E++ Sbjct: 120 FPKADEGEMSKRLADLVRKEACVDVAKSLGLHENIKLGTVGAGVGARLRNSIVGDICEAV 179 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I A++LDGG + A FV W +R + + RD KT LQEWA K TP Y+ R+G Sbjct: 180 IGAIFLDGGYDAAEQFVLSNWTERMRRPVRPLRDPKTILQEWAQGKGLPTPVYREVERTG 239 Query: 183 PDHDPRFTVVVEISGLAPAQGMDC 206 P HDPRF V V++ GLA A+G+ Sbjct: 240 PHHDPRFRVAVDLPGLASAEGIGS 263 >gi|30250251|ref|NP_842321.1| rnc; ribonuclease III (RNAse III) protein [Nitrosomonas europaea ATCC 19718] gi|81436192|sp|Q820I0|RNC_NITEU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|30181046|emb|CAD86236.1| rnc; ribonuclease III (RNAse III) protein [Nitrosomonas europaea ATCC 19718] Length = 245 Score = 128 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 6/220 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y+ +++GY F LL +ALTH S+ + ER EFLGD +L +STLLF F Sbjct: 23 DYAVFLQKLGYTFKQPDLLREALTHRSLGF---PNNERFEFLGDSVLNCAVSTLLFKRFP 79 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S EG+L+ + V+ + ++A L + I + RK SI A+ VE++I Sbjct: 80 SLPEGDLTRLRANFVNQQALHRLASALGIGELILLGEGERKSGGHHRPSILANAVEAIIG 139 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL+ G V + ++ + +D+KT LQE+ ++ PEY V G Sbjct: 140 AIYLESGFAVVEQVIVALYEPLIRQLDPDTSGKDSKTLLQEYLQSRKIALPEYSVLLAQG 199 Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 H F V I G +G S+R AEQ AA + + Sbjct: 200 DPHAQVFHVECVIPGFGIRTRGEGTSRRRAEQEAARQAYE 239 >gi|90109239|pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (D44n) Complexed With Product Of Double-Stranded Rna Processing gi|90109240|pdb|2EZ6|B Chain B, Crystal Structure Of Aquifex Aeolicus Rnase Iii (D44n) Complexed With Product Of Double-Stranded Rna Processing Length = 221 Score = 128 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 115/223 (51%), Gaps = 14/223 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LEK++GY F ++SLLEKALTH S S +E YE LEFLG+ ++ I LL + + Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGNALVNFFIVDLLVQYSPN 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG LS L+S E + +A++L+L FIR+ +I DV E+L AA Sbjct: 62 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFEALWAA 115 Query: 126 LYLDGGIEVAGTFVDKYWKQRALK-----SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +Y+D G + T Y + G+ ++D KT LQE ++ PEY++ Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H +F V +I G SK+ AEQ AA E++K Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIKLL 217 >gi|314936605|ref|ZP_07843952.1| ribonuclease III [Staphylococcus hominis subsp. hominis C80] gi|313655224|gb|EFS18969.1| ribonuclease III [Staphylococcus hominis subsp. hominis C80] Length = 243 Score = 128 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60 ++ K +G ++ + + ++A +HSS + + ERLEFLGD +L L +S LF Sbjct: 15 QFDKKMKMLGLSYTHVDVYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLF 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + + EG L+ ++V + A +++L I + K S+ +D E Sbjct: 75 DKYPNLPEGNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKTGGRTRPSLVSDAFE 134 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + I ALYLD G+EV F K + D KT+ QE+ H++ Y + Sbjct: 135 AFIGALYLDQGLEVVWKFAQKVIFPYVEHNELIGVVDFKTQFQEYIHSQSKGDVTYHLIK 194 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H FT V + A A+G +K+ +EQ AA + Sbjct: 195 EEGPAHHRLFTSEVILENKAIAKGQGRTKKESEQKAAESAYHKL 238 >gi|256827009|ref|YP_003150968.1| ribonuclease III [Cryptobacterium curtum DSM 15641] gi|256583152|gb|ACU94286.1| ribonuclease III [Cryptobacterium curtum DSM 15641] Length = 279 Score = 128 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 106/223 (47%), Gaps = 2/223 (0%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLF 60 + ++ +GY F++ L A+TH S + SYERLEFLGD ILG +++ F Sbjct: 8 REKLDRAQEVLGYRFSDEHFLLSAITHPSAVEGMPVKFSYERLEFLGDSILGAVVADAAF 67 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG L+ SLV+ + SQVA EL A FI + S +V E Sbjct: 68 HRFPDLDEGGLTRIKVSLVAGSSLSQVANELGFADFIIFGQSEAGTGRRGLHSALENVYE 127 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +++AALYLDGG+EVA +F+ + + + + G+TP YK+ Sbjct: 128 AVVAALYLDGGMEVARSFIVQTLLGYMSIDMAREPENPKSALQEKLQEDGITPTYKLIET 187 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP HD F V A A+G+ +K+ AE AA L Sbjct: 188 QGPPHDRTFVAAVYAGLQALARGVGRTKKEAESKAAQTALSHL 230 >gi|256851300|ref|ZP_05556689.1| ribonuclease III [Lactobacillus jensenii 27-2-CHN] gi|260660724|ref|ZP_05861639.1| ribonuclease III [Lactobacillus jensenii 115-3-CHN] gi|282933255|ref|ZP_06338642.1| ribonuclease III [Lactobacillus jensenii 208-1] gi|297206169|ref|ZP_06923564.1| ribonuclease III [Lactobacillus jensenii JV-V16] gi|256616362|gb|EEU21550.1| ribonuclease III [Lactobacillus jensenii 27-2-CHN] gi|260548446|gb|EEX24421.1| ribonuclease III [Lactobacillus jensenii 115-3-CHN] gi|281302759|gb|EFA94974.1| ribonuclease III [Lactobacillus jensenii 208-1] gi|297149295|gb|EFH29593.1| ribonuclease III [Lactobacillus jensenii JV-V16] Length = 230 Score = 128 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 10/229 (4%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ L + G F N +LLE+A THSS + + + +YE+LEFLGD +L L + Sbjct: 1 MVSTKFKNYLFEEYGIKFKNETLLEEAFTHSSYVNEHPKESAGNYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ HF S EG+L+ +++V E S A E + I + K ++ Sbjct: 61 SDYLYRHFPSLNEGQLTRLRSNIVRTEGFSGFAIECGFPAEINLGRGEEKTGARERKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 DV E+ AL+LD G++ F+ + G Sbjct: 121 EDVFEAFNGALFLDQGMDAVQKFLKLTVYPLIDSGEFTDSRDYKTDLQELLQVNGAIKIE 180 Query: 176 KVT--FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P + F V + + G ++G +K+AAEQVAA L + Sbjct: 181 YQVLEETKLPSN---FKVALFVEGKKISEGSGHNKKAAEQVAAKLALIK 226 >gi|42561014|ref|NP_975465.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81400621|sp|Q6MTC9|RNC_MYCMS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|42492511|emb|CAE77107.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321343|gb|ADK69986.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 232 Score = 128 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 6/230 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + ++ N L +ALTH+S ++ ++ SY+RLEFLGD IL + +S LF Sbjct: 1 MNIKNFFEKYNIKINNEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFF 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ EGEL+ S V ET +VA++++L + +++ SI ADV E+ Sbjct: 61 NYSKLSEGELTRLRASTVREETLFRVAKDINLGALVKLGHGEYITKGYEKPSILADVFEA 120 Query: 122 LIAALYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 L AA+YLD + G + KY K + ++ + + + + + Sbjct: 121 LTAAIYLDQKEDGLVTWLGQTLFKYIKDSNFINDTKDFKSELQELLQSEKRSDLKYIIEK 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 ++ +TV V ++G G SK+ AEQ AA++ L + T Sbjct: 181 EDFFANENKILYTVSVNLNGQKFGVGKGFSKQEAEQNAASDCLSKLKKPT 230 >gi|331091059|ref|ZP_08339901.1| ribonuclease III [Lachnospiraceae bacterium 2_1_46FAA] gi|330405281|gb|EGG84817.1| ribonuclease III [Lachnospiraceae bacterium 2_1_46FAA] Length = 231 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 71/212 (33%), Positives = 102/212 (48%), Gaps = 5/212 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIST 57 + LEK+IGY F LL +A+ HSS ++ E ERLEFLGD +L L+ S Sbjct: 1 MRQKLKELEKKIGYKFQRFDLLCQAMRHSSYANEKHMEKNECNERLEFLGDAVLELVSSE 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF EGEL+ S+V + + AREL+L S++ + + S+ +D Sbjct: 61 FLFFENKKMPEGELTRTRASIVCEPSLAFCARELNLGSYLLLGKGEENTGGRYRESLTSD 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+YLDGG A F+ ++ K D+KT LQE F EY + Sbjct: 121 ALEALIGAIYLDGGFASAKEFIHRFVLNDLEHK-KLFFDSKTILQEIVQGNFNEPIEYTL 179 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDH+ F + V I G +K+ Sbjct: 180 LKEEGPDHNKSFFISVSIGNEVYGNGKGRTKK 211 >gi|256384023|gb|ACU78593.1| ribonuclease III [Mycoplasma mycoides subsp. capri str. GM12] gi|256384855|gb|ACU79424.1| ribonuclease III [Mycoplasma mycoides subsp. capri str. GM12] gi|296455406|gb|ADH21641.1| ribonuclease III [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 232 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 6/230 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + ++ N L +ALTH+S ++ ++ SY+RLEFLGD IL + +S LF Sbjct: 1 MNIKNFFEKYNIKINNEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFF 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ EGEL+ S V ET +VA++++L + +++ SI ADV E+ Sbjct: 61 NYSKLSEGELTRLRASTVREETLFRVAKDINLGALVKLGHGEYITKGYEKPSILADVFEA 120 Query: 122 LIAALYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 L AA+YLD + + KY K + ++ + + + + + Sbjct: 121 LTAAIYLDQKEDGLVTWLDQTLFKYIKDSNFINDTKDFKSELQELLQSEKRSDLKYIIEK 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 ++ +TV V ++G G SK+ AEQ AA++ L + T Sbjct: 181 EDFFANENKILYTVSVNLNGQKFGVGKGFSKQEAEQNAASDCLSKLKKPT 230 >gi|317121789|ref|YP_004101792.1| ribonuclease III [Thermaerobacter marianensis DSM 12885] gi|315591769|gb|ADU51065.1| ribonuclease III [Thermaerobacter marianensis DSM 12885] Length = 329 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 105/222 (47%), Gaps = 7/222 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + + G L +ALTH+S + + ERLEFLGD +L L ++ +F Sbjct: 74 LQRVAELTGTEPRRPELFLEALTHASYRAEHPDTAGADNERLEFLGDAVLNLCVTDHIFR 133 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGELS + V AET + A+ L L +R+ S+ AD E+ Sbjct: 134 TYPQRPEGELSKLRAATVRAETLAVTAQRLGLGELLRLGRGEEATGGRQRPSVLADAFEA 193 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 ++AA+YL G+E A F+ + + + D KT LQE + P Y+V Sbjct: 194 VVAAVYLQEGLEGARAFILRTLGDEIRRLAESSGACDDPKTALQELSRRLGLGEPSYRVI 253 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 SGP+HDPR+TV V + G Q + SK+ AE+ AA L Sbjct: 254 DASGPEHDPRYTVEVRVGGRPLGQAVGRSKKVAEREAARIAL 295 >gi|307208065|gb|EFN85596.1| Ribonuclease 3 [Harpegnathos saltator] Length = 1328 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T S ++ S +RLEFLGD +L L++S L+ Sbjct: 1041 KLTKFEESIGIKFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1100 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T + V +L + + + + T +AD++E+ Sbjct: 1101 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK----TKDRADLLEAF 1156 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA------HAKFGVTPE 174 + ALY+D G + F D + + + D K++LQ+ P Sbjct: 1157 LGALYVDKGFKYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1216 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV GP + +TV V G A+ S + AE +A E L++ Sbjct: 1217 YKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEK 1264 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 19/34 (55%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE +GY F NR LL+ ALTH S ++ + Sbjct: 810 LDNLECTLGYEFKNRYLLQLALTHPSYRENFGTN 843 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 59/130 (45%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ERLEFLGD ++ L S LF+ F +EG L+ ++V + + +A++L+L ++ Sbjct: 898 HNERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYML 957 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158 + + A+ E+L+ +L+LDGGIEVA + + K + Sbjct: 958 YAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKDEEDLAKVWVNYP 1017 Query: 159 TELQEWAHAK 168 + Sbjct: 1018 RHPLQEQEPM 1027 >gi|289547872|ref|YP_003472860.1| ribonuclease III [Thermocrinis albus DSM 14484] gi|289181489|gb|ADC88733.1| ribonuclease III [Thermocrinis albus DSM 14484] Length = 237 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 66/214 (30%), Positives = 110/214 (51%), Gaps = 3/214 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +EK +GY+F + SLLE+ALTH S++ + SYE LEFLGD ++ L + LL +F ++E Sbjct: 12 IEKVLGYSFRDPSLLEEALTHRSVAVG-RRSYEVLEFLGDALINLFVVDLLLQNFPQSRE 70 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L++ VS + SQ+++EL L S I++ + S + + + ++ Sbjct: 71 GQLAIMKAFFVSEDFLSQLSQELGLESLIKMERRRKNISSSILADVFEALWGAIYMDTGR 130 Query: 129 D-GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 D + +K G +R+D KT LQE + P Y++ GP H+ Sbjct: 131 DLNTTRDLFFKNYGERILQVVKEGSYRKDYKTLLQELTQHLWKTRPTYRLIGTEGPHHNR 190 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V ++ G A G SK+ AEQ +A ++ + Sbjct: 191 IFEVECQV-GSYRAVGKGKSKKEAEQESAKKLYE 223 >gi|296120504|ref|YP_003628282.1| ribonuclease III [Planctomyces limnophilus DSM 3776] gi|296012844|gb|ADG66083.1| ribonuclease III [Planctomyces limnophilus DSM 3776] Length = 263 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 116/220 (52%), Gaps = 3/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + E R+GY F + LL +AL+H+S + + ES ERLEFLGD ILG + LLF + Sbjct: 10 LTECEARLGYHFRSPELLMQALSHASAAKTRLESNERLEFLGDAILGAAVCDLLFRKYPK 69 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + EGEL+ + +VS C +A+EL L F+ + L + SI + ES+IAA Sbjct: 70 STEGELTRIKSFVVSRHVCGLLAKELHLDQFVIIGKGL-CGTPNVPVSILSATFESVIAA 128 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ++LDGG + A F+ + + + ++ R+ K+ LQ++A G TP Y + GP Sbjct: 129 VFLDGGFDAAKEFIIRLIEPHVEQMVGAEYGRNYKSVLQQYAQKTLGETPRYDLLKEYGP 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH F V + + A +K+ AEQ AAA L Sbjct: 189 DHLKYFKVSAALGEVVYAAAWGINKKEAEQKAAANALSEL 228 >gi|120602683|ref|YP_967083.1| ribonuclease III [Desulfovibrio vulgaris DP4] gi|120562912|gb|ABM28656.1| RNAse III [Desulfovibrio vulgaris DP4] gi|311234148|gb|ADP87002.1| ribonuclease III [Desulfovibrio vulgaris RCH1] Length = 228 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 111/224 (49%), Gaps = 7/224 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57 M + L+K IG+ F + LL A+THSS ++ E ERLEFLGD +L L +S Sbjct: 1 MKPVD--ELQKTIGHRFGDMELLLTAMTHSSWANEQAVPVEHNERLEFLGDAVLELCVSE 58 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF F SA+EG+L+ + LVS + VAREL L +R+ S+ +D Sbjct: 59 ELFRRFPSAREGDLTRMRSRLVSKPSLEGVARELRLDMSLRLGKGEESQGGRERGSLLSD 118 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY 175 +E+++ A++LD G A V + + +D K++LQE F P Y Sbjct: 119 ALEAMLGAVFLDAGYIAAKGVVMRILGPHFPEALVPVRTKDYKSQLQELTQKLFRDRPVY 178 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + SGP+HD +F V V + + S + AEQ+AAA Sbjct: 179 TLLGSSGPEHDKQFDVRVVLPDGTVFEATGPSMKRAEQMAAARA 222 >gi|256832889|ref|YP_003161616.1| ribonuclease III [Jonesia denitrificans DSM 20603] gi|256686420|gb|ACV09313.1| ribonuclease III [Jonesia denitrificans DSM 20603] Length = 241 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 73/214 (34%), Positives = 103/214 (48%), Gaps = 6/214 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 S L ++G + LL ALTH S +H + ERLEFLGD +LGL+ + LF Sbjct: 13 SELLSKLGIHL-DPELLVLALTHRSFAHEAGGIPTNERLEFLGDAVLGLVSAEALFRGHP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ + VS +Q AR L+L S+I + + + SI +D VE++I Sbjct: 72 DRPEGDLARMRAATVSQRPLAQAARTLNLGSYILLGKGESRTGGADKDSILSDTVEAIIG 131 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+Y+ G+E A FV + + ++ D KT +QE P Y T + G Sbjct: 132 AVYVTHGLETAREFVHRLLGETMREAATMGAGLDWKTAIQELCAQLGYPQPTYDFTSQ-G 190 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 PDH FT V I G SK+ AEQ AA Sbjct: 191 PDHARVFTSTVVIEDRRYGSGEGTSKKLAEQQAA 224 >gi|329890079|ref|ZP_08268422.1| ribonuclease III [Brevundimonas diminuta ATCC 11568] gi|328845380|gb|EGF94944.1| ribonuclease III [Brevundimonas diminuta ATCC 11568] Length = 238 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + L +R+G+ F + SLLE+ALTHSS+ ERLEFLGDR+LGLL++ L Sbjct: 13 VAALRQRLGHDFEDASLLERALTHSSVGEGAGPQVPADNERLEFLGDRVLGLLVADRLVR 72 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + SA EG+LS R ++LV C++V L + +R+S K + AD VE+ Sbjct: 73 DYPSADEGQLSARLHALVDKSACARVGERLGVGDALRLSPGETKTGGRRKAGVIADAVEA 132 Query: 122 LIAALYLDGG-IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++AA+Y DGG I F + ++ A + K+ LQEWA + P Y+V R Sbjct: 133 ILAAVYRDGGLIAAQTVFERAWAEELAAPPSAAVTNPKSALQEWAQGQGRPLPTYEVVQR 192 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 +G DH P FTV ++G PA+ S++ AE+ AA +LKRE + Sbjct: 193 TGSDHAPTFTVEATVTGYEPARAQGRSRQEAEKAAAIALLKREDVI 238 >gi|330444350|ref|YP_004377336.1| ribonuclease III [Chlamydophila pecorum E58] gi|328807460|gb|AEB41633.1| ribonuclease III [Chlamydophila pecorum E58] Length = 231 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 100/224 (44%), Gaps = 4/224 (1%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIS 56 M+ + +E ++ + F LL A TH S + E ERLEFLGD +LGL+++ Sbjct: 1 MNPIVNVKEIESKLNFTFTQPQLLVTAFTHPSYRNESPVPIEDSERLEFLGDAVLGLIVT 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF F + +EG LS SLV A CS A L + + + R S QA Sbjct: 61 EHLFLLFPNLEEGVLSTIRASLVDASACSGYAESLGVCENLLIGKGERLQNQRGKLSSQA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 ++ E+++ A+YLDGG+ A + + K LQ++ P+Y+ Sbjct: 121 NLFEAILGAIYLDGGLSPARQLTVPLLPSKEKLQPLMFGNPKNLLQQFTQKHLRTLPKYQ 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 T + V V I +G+ SK+ AE++AA L Sbjct: 181 ATQYVSKEGVMSHHVQVFIHDELWGEGVAHSKKEAEKLAAQHAL 224 >gi|284022406|gb|ADB65770.1| drosha [Marsupenaeus japonicus] Length = 400 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 101/226 (44%), Gaps = 14/226 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 S E+ IG F + LL +A T S ++ S +RLEFLGD +L L+ S L+ + Sbjct: 141 NLSKFEESIGVHFNHIRLLARAFTDRSIGFNNLTLGSNQRLEFLGDTVLQLVASEYLYKY 200 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + ++ S T +AD++E+ Sbjct: 201 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTAYTMYS----HLKTELKTKDRADLLEAF 256 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA------HAKFGVTPE 174 + ALY+D G++ F + + D K++LQ+ P Sbjct: 257 LGALYIDRGLDYCRAFCQVCFFPRLHQFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPI 316 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 YKV GP + +TV V G A+ S + AE AA E L Sbjct: 317 YKVIECKGPTNTRVYTVAVYFRGRRLAKASGHSIQQAEMNAAREAL 362 Score = 37.2 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 53/126 (42%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 EF GD ++ L S LF+ F S +EG L+ ++V + + +A +L L F+ + Sbjct: 2 FEFFGDAVVEFLTSIHLFHLFPSLEEGGLATYRAAIVQNQHLAVLAEKLGLDQFMLYAHG 61 Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 + A+ E+L+ A++LD GIE A + + Q + Sbjct: 62 SDLCHDFELRHAMANCFEALMGAIFLDTGIEDADSVLSSTLFQGEDLLHSIWVNYPPHPI 121 Query: 163 EWAHAK 168 + + Sbjct: 122 QMQEPQ 127 >gi|317049180|ref|YP_004116828.1| ribonuclease III [Pantoea sp. At-9b] gi|316950797|gb|ADU70272.1| ribonuclease III [Pantoea sp. At-9b] Length = 226 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINKLQRKLGYTFTHPELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSNIQNVEKLILDWYQTRLEQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG+ P G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210 >gi|294011699|ref|YP_003545159.1| ribonuclease III [Sphingobium japonicum UT26S] gi|292675029|dbj|BAI96547.1| ribonuclease III [Sphingobium japonicum UT26S] Length = 237 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 92/215 (42%), Positives = 126/215 (58%), Gaps = 3/215 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ IG+A +R+ +ALTH S + +YERLEFLGDRILGLLI+ +++ F E Sbjct: 24 LKALIGHAPKDRTAFHQALTHGSA---HAVNYERLEFLGDRILGLLIAEWVYDRFSGEPE 80 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS RFN+LVS ETC++VAR + + + + R D + ++ DV+E+LI ALYL Sbjct: 81 GKLSRRFNALVSGETCAEVARGAGVPAHLILGKQARDDGAADSDNVLGDVMEALIGALYL 140 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +GG+E A T V + W R + K+ LQEWA A PEY +T RSGP H + Sbjct: 141 EGGLEEARTLVRRLWADRVDTQASAPKHPKSALQEWAAANKRKPPEYAMTDRSGPHHALK 200 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 FTV V I G A SK+ AE AA +L + Sbjct: 201 FTVTVSIKGAGEASATGGSKQEAETAAAKALLDKL 235 >gi|329297705|ref|ZP_08255041.1| ribonuclease III [Plautia stali symbiont] Length = 226 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 115/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINKLQRKLGYTFTHPELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ S K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFELGECLRLGSGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSNIQTVEKLILDWYQNRLEQISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG+ P G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210 >gi|321475336|gb|EFX86299.1| hypothetical protein DAPPUDRAFT_442 [Daphnia pulex] Length = 939 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 105/225 (46%), Gaps = 14/225 (6%) Query: 8 TLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 E+ IG F + LL +A T S ++ S +RLEFLGD +L L+ S L+ F Sbjct: 703 EFEESIGIKFTHIRLLARAFTDRSIGFNNLTLGSNQRLEFLGDTVLQLIASEYLYKFFPE 762 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG LS+ +SLV+ T + V +L + ++ SS + T +AD++E+ + A Sbjct: 763 HHEGHLSLLRSSLVNNRTQAVVCDDLGMTNYALYSSPKAELK----TKDRADLLEAFLGA 818 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWA------HAKFGVTPEYKV 177 LY+D G+E TF + R + D K++LQ+ P YKV Sbjct: 819 LYVDKGLEDCQTFCQVCFFPRLQDFILHQDWNDPKSKLQQCCLTLRTMDGGEPDIPVYKV 878 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP + ++V V G+ A S + AE AA E L++ Sbjct: 879 IECKGPTNTRVYSVAVYFRGIRLASASGHSIQQAEMNAAKEALEK 923 Score = 51.5 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 15/34 (44%), Positives = 19/34 (55%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE RI Y F NR LL+ ALTH S ++ + Sbjct: 469 LDVLEDRIKYRFKNRYLLQLALTHPSYRENFGTN 502 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 54/122 (44%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ERLEFLGD ++ L S L++ F +EG L+ ++V + +Q+A+ L L F+ Sbjct: 557 HNERLEFLGDAVVEFLASIHLYHMFPDLEEGGLATYRAAIVQNQHLAQLAKNLQLDQFML 616 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158 + + A+ E+L+ AL+LDGGI VA + Sbjct: 617 YAHGSDLCHDLELRHAMANCFEALMGALFLDGGINVADRVFSNTLFMNEKDLLDVWVNYP 676 Query: 159 TE 160 + Sbjct: 677 SH 678 >gi|439871|gb|AAA69690.1| ribonuclease [Coxiella burnetii] Length = 233 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 115/225 (51%), Gaps = 7/225 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + L +R+G+ F N LL+ ALTH S S ++ ERLEFLGD +LG +I++ L+ Sbjct: 1 MN--HLNKLMERLGHQFNNLELLKIALTHCS---SGADNNERLEFLGDSVLGFIIASELY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 A+EG+LS S+V+ + +Q++ +L + ++++ +K SI AD +E Sbjct: 56 QRRPQAREGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179 +++ A+Y+D G+E V ++ +R K + L + + Sbjct: 116 TIVGAIYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVK 175 Query: 180 RSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223 +G H FTV + GL +G++ ++R AEQ+AA L+ Sbjct: 176 ITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLELL 220 >gi|109899454|ref|YP_662709.1| ribonuclease III [Pseudoalteromonas atlantica T6c] gi|109701735|gb|ABG41655.1| RNAse III [Pseudoalteromonas atlantica T6c] Length = 227 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 7/228 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + Y L ++GY F + L ALTH S+ ERLEFLGD +LGL+I+ L Sbjct: 1 MQLIDPYKPLYTKLGYEFQDPKNLTVALTHRSVG---ANHNERLEFLGDAVLGLVIAKAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F EG L+ +SLV +T ++VARE L + + K SI AD V Sbjct: 58 FERFPKQPEGNLTRMRSSLVKGDTLAEVAREFSLGDLLLLGPGELKSGGHRRDSILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+Y + G++ + ++ +R +D KT LQE+ + PEY+V Sbjct: 118 EAIIGAIYQEVGMQGCEPLILAWFAKRIDALNPDATPKDDKTRLQEYLQGRQLPLPEYEV 177 Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224 SG HD FTV +SGL P G S+R AEQ A + L+ Sbjct: 178 IDISGKSHDQTFTVQCTVSGLSKPIIGRGKSRRRAEQRTAKQALENLK 225 >gi|312375831|gb|EFR23111.1| hypothetical protein AND_13526 [Anopheles darlingi] Length = 1254 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 86/223 (38%), Gaps = 6/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + E IG F++ LL +A T S ++ S +RLEFLGD +L L+ S L+ HF Sbjct: 778 LTRFEDSIGVKFSHIRLLARAFTDRSMGFTNLTLGSNQRLEFLGDTVLQLICSEYLYRHF 837 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS+ +SLV+ T + V +L + + S+ + + + +L Sbjct: 838 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTQYAVYSNPKAELKTKDRADLLEAFLGALY 897 Query: 124 A----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + + K + P YKV Sbjct: 898 VDKGLVYCEKFCQVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPLYKVIE 957 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP + ++V V G A S + AE AA + L++ Sbjct: 958 CTGPTNTRVYSVAVYFRGKRLACANGHSIQQAEMNAARQALEK 1000 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 18/34 (52%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LEK I Y F NR L+ ALTH S ++ + Sbjct: 545 LDMLEKHIDYRFTNRYTLQLALTHPSYKENFGTN 578 Score = 44.9 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 49/98 (50%) Query: 33 SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD 92 + S ERLEFLGD ++ + S LF+ F +EG L+ ++V + + +A++L Sbjct: 627 TDSNITHNERLEFLGDAVVEFITSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLH 686 Query: 93 LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L F+ + + A+ E+L+ AL LDG Sbjct: 687 LEEFMLYAHGSDLCHELELRHALANCFEALMGALLLDG 724 >gi|300780910|ref|ZP_07090764.1| ribonuclease III [Corynebacterium genitalium ATCC 33030] gi|300532617|gb|EFK53678.1| ribonuclease III [Corynebacterium genitalium ATCC 33030] Length = 252 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 110/218 (50%), Gaps = 5/218 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + +++L +R+G LL+ ALTH S ++ + + ERLEF+GD +LGL I+ LF+ Sbjct: 22 IDHASLLERLGVDVE-PDLLKLALTHRSFANEHGTLPNNERLEFVGDAVLGLTIANELFD 80 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F S E +LS +VS + VAR +DL + + + SI AD E+ Sbjct: 81 RFPSRPESDLSPMRARIVSRYGLADVARSIDLGAHVLLGKGEEATGGRKKDSILADTTEA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 ++ A+Y G +V + + + + + + +D KTELQE G P Y T Sbjct: 141 VLGAIYRQHGFDVTRDVITRLFDDKIENA-HWIQDWKTELQERVAELGGNPPVYTATA-K 198 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GP+H+ FT V I G+ G +K+ AEQ +A E Sbjct: 199 GPEHEQIFTAEVAIDGVRRGVGRGQNKKTAEQNSAREA 236 >gi|238854774|ref|ZP_04645104.1| ribonuclease III [Lactobacillus jensenii 269-3] gi|260664006|ref|ZP_05864859.1| ribonuclease III [Lactobacillus jensenii SJ-7A-US] gi|282933852|ref|ZP_06339200.1| ribonuclease III [Lactobacillus jensenii 208-1] gi|238832564|gb|EEQ24871.1| ribonuclease III [Lactobacillus jensenii 269-3] gi|260561892|gb|EEX27861.1| ribonuclease III [Lactobacillus jensenii SJ-7A-US] gi|281301941|gb|EFA94195.1| ribonuclease III [Lactobacillus jensenii 208-1] Length = 230 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 10/229 (4%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ L + G F N +LLE+A THSS + + + +YE+LEFLGD +L L + Sbjct: 1 MVSTKFKNYLFEEYGIKFKNETLLEEAFTHSSYVNEHPKESVGNYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ HF S EG+L+ +++V E S A E + I + K ++ Sbjct: 61 SDYLYRHFPSLNEGQLTRLRSNIVRTEGFSGFAIECGFPAEINLGHGEEKTGARERKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 DV E+ AL+LD G++ F+ + G Sbjct: 121 EDVFEAFNGALFLDQGMDAVQKFLKLTVYPLIDSGEFTDSRDYKTDLQELLQVNGAIKIE 180 Query: 176 KVT--FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P + F V + + G ++G +K+AAEQVAA L + Sbjct: 181 YQVLEESKLPSN---FKVALLVEGKKISEGSGHNKKAAEQVAAKLALIK 226 >gi|159029006|emb|CAO87467.1| rnc [Microcystis aeruginosa PCC 7806] Length = 226 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 68/215 (31%), Positives = 103/215 (47%), Gaps = 9/215 (4%) Query: 17 FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N LL +ALTH S + E + ERLEFLGD IL L+ LL+ + + E EL+ Sbjct: 7 FQNALLLTQALTHRSYVNEQSELTENNERLEFLGDAILAFLVGELLYQKYPAMNEAELTR 66 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 ++LV E +Q+ E+ L +R+ KD ++ AD E++I A YLD G+ Sbjct: 67 LRSNLVKEEQLAQLGIEIGLGELMRLGKGAIKDRGRSNPTLLADTFEAIIGAYYLDSGLN 126 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTE------LQEWAHAKFGVTPEYKVTFRSGPDHDP 187 ++ + A + ++ + Q+WA A F PEY + +GP H Sbjct: 127 AVKNYLHGLFIPVASHLVSQQSESPSFIDAKNLFQQWALANFASNPEYAIIDVTGPPHAR 186 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 FT V ++ L G K+ A + AA + LKR Sbjct: 187 EFTAEVRVNNLLYGTGKGKRKQDATKAAAEDALKR 221 >gi|16761493|ref|NP_457110.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|22654063|sp|Q8Z4K4|RNC_SALTI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|25289227|pir||AC0829 ribonuclease III (EC 3.1.26.3) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503793|emb|CAD02783.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi] Length = 226 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 109/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ P Y V Sbjct: 118 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGHHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|328777204|ref|XP_394444.3| PREDICTED: ribonuclease 3 [Apis mellifera] Length = 1290 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T S ++ S +RLEFLGD +L L++S L+ + Sbjct: 1010 KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKY 1069 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T + V +L + + + + T +AD++E+ Sbjct: 1070 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK----TKDRADLLEAF 1125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA------HAKFGVTPE 174 + ALY+D G+E F D + + + D K++LQ+ P Sbjct: 1126 LGALYVDKGLEYCRVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1185 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV GP + +TV V G A+ S + AE +A E L++ Sbjct: 1186 YKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEK 1233 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 20/34 (58%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE+ +GY F NR LL+ ALTH S ++ + Sbjct: 779 LDNLERTLGYEFKNRYLLQLALTHPSYRENFGTN 812 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 58/122 (47%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ERLEFLGD ++ L S LF+ F +EG L+ ++V + + +A++L+L ++ Sbjct: 867 HNERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYML 926 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158 + + A+ E+L+ +L+LDGGIEVA + + K + Sbjct: 927 YAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKDEEDLAKVWVNYP 986 Query: 159 TE 160 Sbjct: 987 KH 988 >gi|118602619|ref|YP_903834.1| ribonuclease III [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567558|gb|ABL02363.1| RNAse III [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 221 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 6/221 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L+K+I Y F + SLL+ ALTH S+ + ERLEFLGD ILG++IS L+ F + Sbjct: 2 KKLQKKINYQFKDLSLLKLALTHCSMGK---NNNERLEFLGDSILGVIISKELYQRFPNI 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS + LV +T +Q++ L+L++ + + K SIQAD +E++ A+ Sbjct: 59 DEGKLSRLRSHLVRDQTLTQLSAGLELSNSLILGFGELKSGGYRRESIQADAIEAIFGAV 118 Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LD E T V ++ + +D KT+LQE+ V P+Y++T G D Sbjct: 119 LLDSNFETTSTVVLDLFEMLLNNISPDDSLKDPKTQLQEYLQKYGNVLPKYELTDTIGKD 178 Query: 185 HDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224 H+ FT+ + S + AEQ A +LK+ Sbjct: 179 HNAIFTINCLLKDQNLQVSQSAKSIKKAEQSCAQTLLKKLK 219 >gi|148244713|ref|YP_001219407.1| ribonuclease III [Candidatus Vesicomyosocius okutanii HA] gi|146326540|dbj|BAF61683.1| ribonuclease III [Candidatus Vesicomyosocius okutanii HA] Length = 221 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 111/221 (50%), Gaps = 6/221 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L+K+I Y F + SLL+ ALTH S + + + ERLEFLGD ILG+ IS L+ F Sbjct: 2 KKLQKKINYQFKDLSLLKLALTHRS---TGRNNNERLEFLGDSILGVAISKELYQRFPCV 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS + L+ +T Q+ L+L++ + + S K SIQAD VE++ A+ Sbjct: 59 DEGKLSRLRSHLIRGQTLVQLGTALELSNNLILGSGELKSGGYRRESIQADTVEAIFGAV 118 Query: 127 YLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LD E + ++ +D+KT+LQE+ + + P+YK+ +G D Sbjct: 119 LLDSNFETTNMVILGLFKVLLNSISPDDSLKDSKTQLQEYLQKRGNILPKYKLIDTTGKD 178 Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224 H+ F V + + S + AEQ A +LK+ Sbjct: 179 HNAIFMVNCFLEDQKLQVKQSAKSIKKAEQFCAQILLKKLK 219 >gi|312864846|ref|ZP_07725077.1| ribonuclease III [Streptococcus downei F0415] gi|311099973|gb|EFQ58186.1| ribonuclease III [Streptococcus downei F0415] Length = 228 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 70/212 (33%), Positives = 107/212 (50%), Gaps = 9/212 (4%) Query: 7 STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 LE+++ G F ++SLL+ A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 2 QALEEKLKADFGIVFKDKSLLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLISRY 61 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF F EG+LS + +V E+ + +++ +FI++ K +I D+ Sbjct: 62 LFEKFPKRPEGDLSKMRSMIVREESLAGFSKDCGFEAFIKLGKGEEKTGGRERETILGDL 121 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + AL LD GIEV F+++ + + +D KT LQE K V Y+V Sbjct: 122 FEAFLGALDLDQGIEVVEKFLNQVMIPKVEVGDYEQVKDYKTALQEKLQVKGSVQINYRV 181 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +GP HD F VVV G + G SK+ Sbjct: 182 ISETGPAHDKHFEVVVSADGKDLSGGQGKSKK 213 >gi|225873636|ref|YP_002755095.1| ribonuclease III [Acidobacterium capsulatum ATCC 51196] gi|225793249|gb|ACO33339.1| ribonuclease III [Acidobacterium capsulatum ATCC 51196] Length = 302 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 115/264 (43%), Gaps = 47/264 (17%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ-------------------------ESYE 41 + LE +GY F ++ LL +ALTHSS+++ E E Sbjct: 18 AELEAALGYTFQDKGLLARALTHSSLAYEQTAQTATPAAARATGKSSEARTRRSPLEDNE 77 Query: 42 RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 +LEFLGD +LGL+++ L+ EG+L+ ++LVS + QVA L L +++R+ Sbjct: 78 QLEFLGDAVLGLIVAEALYRAHPEMSEGQLTRLRSALVSRKHMGQVAHRLHLGTYLRMGR 137 Query: 102 DLRKDVCSFMTSIQADVVESL----------------IAALYLDGGIEVAGTFVDKYWKQ 145 + ++ A+ E+L A IE Sbjct: 138 GEERSGGRKKPALLANAAEALIAAVYLDAAGITGPCETALTAARAIIERHVIEPSLPSLL 197 Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL------A 199 + G D K+ LQE+ ++ PEY VT +SGPDH RF V V + G A Sbjct: 198 QEASRGTSIGDHKSALQEFLQSEHRGQPEYVVTGQSGPDHHKRFLVEVRLPGKAGAPGTA 257 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 A+G+ +K+ AEQ AA L++ Sbjct: 258 LARGIGGTKKHAEQEAARRALRKL 281 >gi|283850854|ref|ZP_06368140.1| ribonuclease III [Desulfovibrio sp. FW1012B] gi|283573777|gb|EFC21751.1| ribonuclease III [Desulfovibrio sp. FW1012B] Length = 239 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 112/224 (50%), Gaps = 5/224 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62 ++ +++ +G+AFA LL ALTHSS ++ + ERLEFLGD +L L +S LF Sbjct: 5 FAVVQEALGHAFARPELLTAALTHSSWANERGDALGHNERLEFLGDAVLELCVSEELFVR 64 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A EGEL++ + LV+ + + +AR L L + + ++ +D E++ Sbjct: 65 FPEAPEGELTLLRSQLVNEGSLAAMARRLSLEEHVLLGKGEENQGGRTRPALLSDAFEAV 124 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG A F+ + + +D K+ LQE+ P Y + Sbjct: 125 IGAIFLDGGYAAAKGFIIRAFAGSWPMRPAAPKTKDFKSRLQEYTQKAHKSRPVYSLLGS 184 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP+HD RF V + + ++ S + AEQ+AA L+ G Sbjct: 185 EGPEHDKRFQVRLTLPDGQVITAVEKSVKKAEQMAALRALEALG 228 >gi|166365898|ref|YP_001658171.1| ribonuclease III [Microcystis aeruginosa NIES-843] gi|166088271|dbj|BAG02979.1| ribonuclease III [Microcystis aeruginosa NIES-843] Length = 226 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 68/215 (31%), Positives = 103/215 (47%), Gaps = 9/215 (4%) Query: 17 FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N LL +ALTH S + E + ERLEFLGD IL L+ LL+ + + E EL+ Sbjct: 7 FQNALLLTQALTHRSYVNEQSELTENNERLEFLGDAILAFLVGELLYQKYPAMNEAELTR 66 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 ++LV E +Q+ E+ L +R+ KD ++ AD E++I A YLD G+ Sbjct: 67 LRSNLVKEEQLAQLGLEIGLGELMRLGKGAIKDRGRSNPTLLADTFEAIIGAYYLDSGLN 126 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTE------LQEWAHAKFGVTPEYKVTFRSGPDHDP 187 ++ + A + ++ + Q+WA A F PEY + +GP H Sbjct: 127 AVKNYLHGLFIPVASHLVSQQSESSSFIDAKNLFQQWALANFASNPEYAIIDVTGPPHAR 186 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 FT V ++ L G K+ A + AA + LKR Sbjct: 187 EFTAEVRVNNLLYGTGKGKRKQDATKAAAEDALKR 221 >gi|209964796|ref|YP_002297711.1| ribonuclease III [Rhodospirillum centenum SW] gi|209958262|gb|ACI98898.1| ribonuclease III [Rhodospirillum centenum SW] Length = 236 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 82/207 (39%), Positives = 109/207 (52%), Gaps = 3/207 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 S LE +GY F +R LL +ALTH S + + YERLEFLGDR+LGL+I+ L Sbjct: 11 LSELETGLGYHFRHRDLLVQALTHPSLGGVERNAGRGYERLEFLGDRVLGLVIAEWLLER 70 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F + EG L+ R +LV AE + VA + L F+R++ R +I AD E++ Sbjct: 71 FPAEAEGALARRHTALVRAEALTVVAETIGLGPFLRLAPSERDSGGQAKPAILADACEAV 130 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I A++ DGG+E A T + W +D KT LQEWA + P Y+ R G Sbjct: 131 IGAIFQDGGLEPARTLIRTRWTPLIEADLSPPQDPKTALQEWALGRGRPLPAYETLSREG 190 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDH P F V V + G PA SKR Sbjct: 191 PDHAPVFRVRVRVEGAEPATATGPSKR 217 >gi|308187806|ref|YP_003931937.1| RNase III, ds RNA [Pantoea vagans C9-1] gi|308058316|gb|ADO10488.1| RNase III, ds RNA [Pantoea vagans C9-1] Length = 226 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINKLQRKLGYTFTHSELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD IE + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSSIERVEQLILDWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG+ P G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210 >gi|310815100|ref|YP_003963064.1| ribonuclease III [Ketogulonicigenium vulgare Y25] gi|308753835|gb|ADO41764.1| ribonuclease III [Ketogulonicigenium vulgare Y25] Length = 228 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 88/216 (40%), Positives = 121/216 (56%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 R+G+ F N +L +ALTH S S + +RLEFLGDR+LGL+++ L Sbjct: 7 LMDFADRLGHRFINTEVLMRALTHGSASSPDRSDNQRLEFLGDRVLGLVVAEALLAADKF 66 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EG+++ RFN LV ETC++VAR +DL + +R+ K ++ AD +E++IAA Sbjct: 67 ATEGQIAPRFNRLVRRETCAEVARAMDLGAALRIGRSEMKTGGRKKEAVLADAMEAVIAA 126 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +YLD G + A + V K+W RDAKT LQEWA + P Y RSGPDH Sbjct: 127 VYLDAGFDAAKSVVLKHWAAHIANVDDDARDAKTALQEWAQGRGETPPAYIEEARSGPDH 186 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P FTV V + A G SKR AE AA ++L+ Sbjct: 187 APIFTVRVTLQSGPTATGEAGSKRLAEHAAATKLLQ 222 >gi|144899862|emb|CAM76726.1| ribonuclease III [Magnetospirillum gryphiswaldense MSR-1] Length = 229 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 85/217 (39%), Positives = 116/217 (53%), Gaps = 4/217 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M A L +R+G+ FA LL +ALTH S++ YERLEFLGDR+LGL+++ Sbjct: 1 MDAGPIHDLCQRLGHEFAQSQLLTQALTHPSVAQGRAPRRNTPYERLEFLGDRVLGLVVA 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +LF+ F + EG L+ R +LV E+ + VA ++ L + +S ++ A Sbjct: 61 DMLFHRFPTEAEGALARRHAALVRRESLAVVAGQIGLPPCLTLSKGEEDAGGRGNPALLA 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D E++I ALY D G EVA FV W + + +DAKT LQEWA P Y Sbjct: 121 DACEAVIGALYADAGFEVAARFVRSAWTALMDAAAQPPKDAKTALQEWAQGLGKPLPVYT 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 V + GP HDP F V V + G+ P G SKR AEQ Sbjct: 181 VVGQDGPPHDPTFVVSVTVEGVDPVHGTGASKRVAEQ 217 >gi|195119378|ref|XP_002004208.1| GI19789 [Drosophila mojavensis] gi|193909276|gb|EDW08143.1| GI19789 [Drosophila mojavensis] Length = 1297 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 81/224 (36%), Gaps = 6/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ H Sbjct: 934 DLTRFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 993 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + F ++ + + +L Sbjct: 994 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKFAVYANPKADLKTKDRADLLEAFLGAL 1053 Query: 123 IA----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + + + K + P YKV Sbjct: 1054 YVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVV 1113 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP + + V V A S + AE AA + L+ Sbjct: 1114 EASGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALEN 1157 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 20/34 (58%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE+ IGY F NR LL+ ALTH S +Y + Sbjct: 703 LDLLEESIGYKFKNRYLLQLALTHPSYKENYGTN 736 Score = 43.0 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 49/98 (50%) Query: 36 YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A++L L Sbjct: 788 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 847 Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 F+ + + A+ E+L+ AL LDGGI+ Sbjct: 848 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 885 >gi|150021479|ref|YP_001306833.1| ribonuclease III [Thermosipho melanesiensis BI429] gi|149794000|gb|ABR31448.1| Ribonuclease III [Thermosipho melanesiensis BI429] Length = 231 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 10/229 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLL 59 M R +E IGY F N+ LL ALTH+S ++ ++ SYERLEFLGD ++ +L+ T+L Sbjct: 1 MERFREGEIEHVIGYRFRNKELLFTALTHTSYANENKKQSYERLEFLGDSVIDILVCTIL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + EG ++ +++ S + ++A++ +L +I + R+ S SI ADVV Sbjct: 61 YEQYQTLNEGTMAQIKSAVTSEDILFEIAKKFNLGKYILLGKGERRSRGSEKKSILADVV 120 Query: 120 ESLIAALYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 ESLIAA+YLD +GK D KT+LQE KF P Y Sbjct: 121 ESLIAAIYLDSNKNLKLIENLFSKIFKDYIDIFLTGKRIFDYKTKLQELTQDKFKQLPVY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + T G F ++I+ ++ SK+ AE++AA ++ Sbjct: 181 ETTTVGGK-----FITTLKINNKIYSKAKGSSKKDAEKLAAKIAYEKLK 224 >gi|304392070|ref|ZP_07374012.1| ribonuclease III [Ahrensia sp. R2A130] gi|303296299|gb|EFL90657.1| ribonuclease III [Ahrensia sp. R2A130] Length = 244 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 100/206 (48%), Positives = 139/206 (67%), Gaps = 2/206 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNH 62 R + LE+ IGY FA+ L++ALTH+S + ++ YERLEFLGDR+LG+ I+ +LF Sbjct: 9 RIAELEELIGYTFASHDRLKRALTHASATRKPGDNSHYERLEFLGDRVLGVCIAEMLFET 68 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F +A EGELSVR N+LVS +TC+ +A E+ L +FI +D++ M S++ADVVES+ Sbjct: 69 FPTAPEGELSVRLNALVSGKTCAAIADEIGLHAFITTGNDVKHVTGKRMRSVRADVVESV 128 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IAA+YLDGG+E A F+ +YW R ++G RD+KT LQEWAH G TP Y + ++G Sbjct: 129 IAAIYLDGGLEPARDFITRYWAGRLHETGAGIRDSKTALQEWAHTHSGETPVYTLVEKTG 188 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSK 208 PDHDP F + V I G++ G SK Sbjct: 189 PDHDPLFKISVAIHGVSGGNGAGRSK 214 >gi|304398620|ref|ZP_07380492.1| ribonuclease III [Pantoea sp. aB] gi|304353831|gb|EFM18206.1| ribonuclease III [Pantoea sp. aB] Length = 226 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 115/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINKLQRKLGYTFTHSELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD GIE + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSGIERVEQLILDWYQSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG+ P G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210 >gi|297559194|ref|YP_003678168.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843642|gb|ADH65662.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 248 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 103/221 (46%), Gaps = 4/221 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + IG + +L +ALTH S ++ + ERLEFLGD +LGL+++ LF Sbjct: 11 KAFHQAIGVEV-DPKILLRALTHRSYAYEKGGLPTNERLEFLGDSVLGLVVTDTLFRKHP 69 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ ++V+ + VAR L + ++IR+ +SI AD +E++I Sbjct: 70 DLPEGQLAKLRAAVVNMRALADVARGLGVGAYIRLGRGEEGTGGRDKSSILADTLEAVIG 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLD G++VA FV + + A SG + A + SGP Sbjct: 130 AVYLDRGLDVASEFVHRLFDPLIATASGLGAGLDWKTSLQELTAAEMLGVPEYHVDESGP 189 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 DH F V ++G + G SK+ AEQ AA K Sbjct: 190 DHQKTFRATVRVAGESYGLGEGRSKKEAEQQAAESAWKAIK 230 >gi|220904300|ref|YP_002479612.1| ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868599|gb|ACL48934.1| Ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 243 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 6/225 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNH 62 ++K++G+ F + LLE ALTHSS ++ QE ER EFLGD +L L +S L+ Sbjct: 16 LELVKKQLGHGFIRKDLLELALTHSSWANECGPGQEHNERQEFLGDAVLELCVSWELYRR 75 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F SA+EGEL+ +SLVSA + ++ AR++ L +++ ++ +D +E++ Sbjct: 76 FPSAREGELTKMRSSLVSAVSLAERARDMGLDRLLKLGRGEESQGGRKRDAVLSDALEAV 135 Query: 123 IAALYLDGGI---EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +AA+Y DGG + A + GK +D KT LQE + +FG P Y Sbjct: 136 LAAIYEDGGFAAAQEAVGRIFADQWPSRAGDGKASKDYKTRLQEASQQRFGQAPLYTRVG 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP+H F V + + + S + AEQ AA L+ G Sbjct: 196 SHGPEHSKVFEVALRLPDGSEFSASGSSCKKAEQQAARIALETLG 240 >gi|295105981|emb|CBL03524.1| RNAse III [Gordonibacter pamelaeae 7-10-1-b] Length = 281 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 105/222 (47%), Gaps = 2/222 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 + + ++ + Y F + LL A+TH S + + SYERLEFLGD ILG +++ + F+ Sbjct: 10 KLARAQEILDYRFDSEHLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVAAIAFHR 69 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ +LVS + S VA L A I S + S +V E++ Sbjct: 70 FHDLDEGGLTRIKVALVSGASLSDVADRLGFADVIVFGSSETGTGKRGLHSALENVYEAV 129 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +AALYLDGGI A FV++ R + + + G+TP YK+ G Sbjct: 130 VAALYLDGGIGAAQEFVERTLIPRMSLDMAREPENPKSALQEKLQEDGITPTYKLVETQG 189 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P HD F V A+G +K+ AE AA L R G Sbjct: 190 PPHDRTFVAQVFAGTQGLARGTGRTKKEAESQAAKSTLARLG 231 >gi|113475790|ref|YP_721851.1| RNAse III [Trichodesmium erythraeum IMS101] gi|110166838|gb|ABG51378.1| RNAse III [Trichodesmium erythraeum IMS101] Length = 233 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 16/227 (7%) Query: 16 AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHF---DSAKEG 69 F N+ LL++ALTH S + +E E LEF+GD +LG L+ LL+ + + K Sbjct: 7 EFKNQKLLQQALTHRSYLNENYGDEEDNESLEFIGDALLGFLVGELLYRRYKEEHNLKPK 66 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 EL+ + LV + ++ A +L + + +R+ KD ++ +D E++I A +LD Sbjct: 67 ELTRIRSLLVDEKQLAKFAVQLGIGAKMRLGKGAEKDGGRKNPALLSDTFEAIIGAYFLD 126 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTE----------LQEWAHAKFGVTPEYKVTF 179 + F+ + ++ A ++ Q+WA AKFG P Y+ Sbjct: 127 SNLTKVKPFIKRLFEPVADNIILPNYGDNSQPKDLVDTKGKFQQWALAKFGENPRYESNN 186 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 G DH FT V + G G K+ AE+ AA + LK+ G+ Sbjct: 187 GEGLDHAKIFTAEVRVRGKLYGVGKGNRKQEAEKSAAEKALKKVGLI 233 >gi|213161855|ref|ZP_03347565.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 231 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 6 MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 63 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 122 Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 123 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 182 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 183 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 215 >gi|167549387|ref|ZP_02343146.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992712|ref|ZP_02573808.1| ribonuclease III [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232159|ref|ZP_02657217.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238326|ref|ZP_02663384.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168245106|ref|ZP_02670038.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261368|ref|ZP_02683341.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466658|ref|ZP_02700512.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821429|ref|ZP_02833429.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443007|ref|YP_002041844.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450415|ref|YP_002046643.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472117|ref|ZP_03078101.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194733998|ref|YP_002115644.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247832|ref|YP_002147539.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262390|ref|ZP_03162464.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198245284|ref|YP_002216648.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387478|ref|ZP_03214090.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929592|ref|ZP_03220666.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213425276|ref|ZP_03358026.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213585348|ref|ZP_03367174.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213613049|ref|ZP_03370875.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646353|ref|ZP_03376406.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213859103|ref|ZP_03385074.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238912699|ref|ZP_04656536.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825501|ref|ZP_06544708.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|194401670|gb|ACF61892.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408719|gb|ACF68938.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458481|gb|EDX47320.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709500|gb|ACF88721.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630694|gb|EDX49286.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211535|gb|ACH48932.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240645|gb|EDY23265.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288832|gb|EDY28205.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939800|gb|ACH77133.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604576|gb|EDZ03121.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321311|gb|EDZ06511.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205325334|gb|EDZ13173.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329152|gb|EDZ15916.1| ribonuclease III [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333647|gb|EDZ20411.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336135|gb|EDZ22899.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341915|gb|EDZ28679.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349444|gb|EDZ36075.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|312913570|dbj|BAJ37544.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087082|emb|CBY96851.1| RNase III, ds RNA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222714|gb|EFX47785.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613351|gb|EFY10293.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620445|gb|EFY17310.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625087|gb|EFY21916.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629469|gb|EFY26245.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633856|gb|EFY30595.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635462|gb|EFY32173.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639862|gb|EFY36541.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644252|gb|EFY40796.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649944|gb|EFY46364.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654873|gb|EFY51190.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658199|gb|EFY54465.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661729|gb|EFY57947.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669710|gb|EFY65856.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673283|gb|EFY69388.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674928|gb|EFY71015.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682951|gb|EFY78969.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685612|gb|EFY81607.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323130912|gb|ADX18342.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323191960|gb|EFZ77198.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200407|gb|EFZ85488.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201307|gb|EFZ86374.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208377|gb|EFZ93317.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211547|gb|EFZ96385.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215979|gb|EGA00711.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221760|gb|EGA06168.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225632|gb|EGA09859.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229350|gb|EGA13474.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235335|gb|EGA19419.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237479|gb|EGA21542.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245234|gb|EGA29235.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248808|gb|EGA32735.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254012|gb|EGA37833.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259060|gb|EGA42708.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261983|gb|EGA45548.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267766|gb|EGA51247.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269675|gb|EGA53127.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624403|gb|EGE30748.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628781|gb|EGE35124.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 245 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 20 MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 77 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 136 Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 197 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 229 >gi|152981163|ref|YP_001353060.1| ribonuclease III [Janthinobacterium sp. Marseille] gi|151281240|gb|ABR89650.1| ribonuclease III [Janthinobacterium sp. Marseille] Length = 322 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 111/221 (50%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + + L+ R+G+ F + LL++ALTH S ERLEFLGD IL ++++LLF+ + Sbjct: 1 MDLTLLQNRLGHTFKDAVLLQQALTHRS---HGSVHNERLEFLGDSILNCVVASLLFDRY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+L+ F+R+ K SI AD +E+L Sbjct: 58 SKIDEGDLSRLRANLVKQQSLYEIAQRLELSHFLRLGEGELKSGGFRRPSILADTLEALF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A + + +DAKT LQE+ K P+Y V Sbjct: 118 GAIFLDAGFDTARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H+ F + + L G S+RA EQ AA L+ Sbjct: 178 GAAHNQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALE 218 >gi|16765901|ref|NP_461516.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140810|ref|NP_804152.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412543|ref|YP_149618.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361478|ref|YP_002141114.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205353677|ref|YP_002227478.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857988|ref|YP_002244639.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|20141650|sp|Q56056|RNC_SALTY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|81360707|sp|Q5PIG5|RNC_SALPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741376|sp|B5QTU8|RNC_SALEP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741377|sp|B5RD49|RNC_SALG2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238689916|sp|B5BAT0|RNC_SALPK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|16421128|gb|AAL21475.1| RNase III, ds RNA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29136435|gb|AAO68001.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126800|gb|AAV76306.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092954|emb|CAR58384.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205273458|emb|CAR38435.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206709791|emb|CAR34143.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247776|emb|CBG25604.1| RNase III [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994707|gb|ACY89592.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159129|emb|CBW18643.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332989508|gb|AEF08491.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 226 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|32129971|sp|Q9PB98|RNC_XYLFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 227 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 115/226 (50%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + + S ++RIGY F + SLL +AL H S ERLEFLGD ++ LLI+ LF Sbjct: 1 MISSKASDYQQRIGYVFTDPSLLLQALRHCSAG---TPHNERLEFLGDSVVNLLIAEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + A EG L+ + LV + + +AR + L + + K SI AD VE Sbjct: 58 QRWPRADEGALTRARSELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD + T V +++ AL GK +D KT LQEW A+ P Y++ Sbjct: 118 AVIAAIYLDADLATCRTVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELI 177 Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 F SG H F V + L +G S+R AEQ AA+ + + Sbjct: 178 FESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAASHAIDQL 223 >gi|15803093|ref|NP_289124.1| ribonuclease III [Escherichia coli O157:H7 EDL933] gi|15832687|ref|NP_311460.1| ribonuclease III [Escherichia coli O157:H7 str. Sakai] gi|16130492|ref|NP_417062.1| RNase III [Escherichia coli str. K-12 substr. MG1655] gi|24113909|ref|NP_708419.1| ribonuclease III [Shigella flexneri 2a str. 301] gi|26248932|ref|NP_754972.1| ribonuclease III [Escherichia coli CFT073] gi|30063969|ref|NP_838140.1| ribonuclease III [Shigella flexneri 2a str. 2457T] gi|74313129|ref|YP_311548.1| ribonuclease III [Shigella sonnei Ss046] gi|82545019|ref|YP_408966.1| ribonuclease III [Shigella boydii Sb227] gi|82777993|ref|YP_404342.1| ribonuclease III [Shigella dysenteriae Sd197] gi|89109373|ref|AP_003153.1| RNase III [Escherichia coli str. K-12 substr. W3110] gi|91211893|ref|YP_541879.1| ribonuclease III [Escherichia coli UTI89] gi|110642729|ref|YP_670459.1| ribonuclease III [Escherichia coli 536] gi|110806512|ref|YP_690032.1| ribonuclease III [Shigella flexneri 5 str. 8401] gi|117624788|ref|YP_853701.1| ribonuclease III [Escherichia coli APEC O1] gi|157157389|ref|YP_001463890.1| ribonuclease III [Escherichia coli E24377A] gi|157162046|ref|YP_001459364.1| ribonuclease III [Escherichia coli HS] gi|168748363|ref|ZP_02773385.1| ribonuclease III [Escherichia coli O157:H7 str. EC4113] gi|168761188|ref|ZP_02786195.1| ribonuclease III [Escherichia coli O157:H7 str. EC4501] gi|168778544|ref|ZP_02803551.1| ribonuclease III [Escherichia coli O157:H7 str. EC4076] gi|168787927|ref|ZP_02812934.1| ribonuclease III [Escherichia coli O157:H7 str. EC869] gi|170019150|ref|YP_001724104.1| ribonuclease III [Escherichia coli ATCC 8739] gi|170082176|ref|YP_001731496.1| RNase III [Escherichia coli str. K-12 substr. DH10B] gi|170680897|ref|YP_001744756.1| ribonuclease III [Escherichia coli SMS-3-5] gi|170767161|ref|ZP_02901614.1| ribonuclease III [Escherichia albertii TW07627] gi|187732795|ref|YP_001881346.1| ribonuclease III [Shigella boydii CDC 3083-94] gi|187775820|ref|ZP_02992726.1| ribonuclease III [Escherichia coli O157:H7 str. EC4196] gi|188492722|ref|ZP_02999992.1| ribonuclease III [Escherichia coli 53638] gi|189402493|ref|ZP_03006738.1| ribonuclease III [Escherichia coli O157:H7 str. EC4401] gi|189403151|ref|ZP_03006973.1| ribonuclease III [Escherichia coli O157:H7 str. EC4486] gi|189405744|ref|ZP_02823956.2| ribonuclease III [Escherichia coli O157:H7 str. EC508] gi|191167987|ref|ZP_03029789.1| ribonuclease III [Escherichia coli B7A] gi|191174016|ref|ZP_03035533.1| ribonuclease III [Escherichia coli F11] gi|193064102|ref|ZP_03045187.1| ribonuclease III [Escherichia coli E22] gi|193068346|ref|ZP_03049309.1| ribonuclease III [Escherichia coli E110019] gi|194429263|ref|ZP_03061790.1| ribonuclease III [Escherichia coli B171] gi|194432095|ref|ZP_03064384.1| ribonuclease III [Shigella dysenteriae 1012] gi|194437570|ref|ZP_03069666.1| ribonuclease III [Escherichia coli 101-1] gi|195936714|ref|ZP_03082096.1| ribonuclease III [Escherichia coli O157:H7 str. EC4024] gi|208807620|ref|ZP_03249957.1| ribonuclease III [Escherichia coli O157:H7 str. EC4206] gi|208811958|ref|ZP_03253287.1| ribonuclease III [Escherichia coli O157:H7 str. EC4045] gi|208820348|ref|ZP_03260668.1| ribonuclease III [Escherichia coli O157:H7 str. EC4042] gi|209400787|ref|YP_002272042.1| ribonuclease III [Escherichia coli O157:H7 str. EC4115] gi|209920046|ref|YP_002294130.1| ribonuclease III [Escherichia coli SE11] gi|215487911|ref|YP_002330342.1| ribonuclease III [Escherichia coli O127:H6 str. E2348/69] gi|217327524|ref|ZP_03443607.1| ribonuclease III [Escherichia coli O157:H7 str. TW14588] gi|218547905|ref|YP_002381696.1| ribonuclease III [Escherichia fergusonii ATCC 35469] gi|218555148|ref|YP_002388061.1| ribonuclease III [Escherichia coli IAI1] gi|218559488|ref|YP_002392401.1| ribonuclease III [Escherichia coli S88] gi|218690683|ref|YP_002398895.1| ribonuclease III [Escherichia coli ED1a] gi|218696195|ref|YP_002403862.1| ribonuclease III [Escherichia coli 55989] gi|218701081|ref|YP_002408710.1| ribonuclease III [Escherichia coli IAI39] gi|218706071|ref|YP_002413590.1| ribonuclease III [Escherichia coli UMN026] gi|237705077|ref|ZP_04535558.1| ribonuclease III [Escherichia sp. 3_2_53FAA] gi|238901732|ref|YP_002927528.1| RNase III [Escherichia coli BW2952] gi|253772534|ref|YP_003035365.1| ribonuclease III [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162542|ref|YP_003045650.1| ribonuclease III [Escherichia coli B str. REL606] gi|254794517|ref|YP_003079354.1| ribonuclease III [Escherichia coli O157:H7 str. TW14359] gi|256017284|ref|ZP_05431149.1| ribonuclease III [Shigella sp. D9] gi|256021747|ref|ZP_05435612.1| ribonuclease III [Escherichia sp. 4_1_40B] gi|260845252|ref|YP_003223030.1| RNase III [Escherichia coli O103:H2 str. 12009] gi|260856661|ref|YP_003230552.1| RNase III [Escherichia coli O26:H11 str. 11368] gi|260869254|ref|YP_003235656.1| RNase III [Escherichia coli O111:H- str. 11128] gi|261222997|ref|ZP_05937278.1| RNase III [Escherichia coli O157:H7 str. FRIK2000] gi|261259452|ref|ZP_05951985.1| RNase III [Escherichia coli O157:H7 str. FRIK966] gi|291283842|ref|YP_003500660.1| Ribonuclease 3 [Escherichia coli O55:H7 str. CB9615] gi|297516306|ref|ZP_06934692.1| ribonuclease III [Escherichia coli OP50] gi|307139203|ref|ZP_07498559.1| ribonuclease III [Escherichia coli H736] gi|307313862|ref|ZP_07593478.1| ribonuclease III [Escherichia coli W] gi|309784618|ref|ZP_07679253.1| ribonuclease III [Shigella dysenteriae 1617] gi|312965483|ref|ZP_07779715.1| ribonuclease III [Escherichia coli 2362-75] gi|312973187|ref|ZP_07787359.1| ribonuclease III [Escherichia coli 1827-70] gi|331643191|ref|ZP_08344326.1| ribonuclease III [Escherichia coli H736] gi|331648313|ref|ZP_08349402.1| ribonuclease III [Escherichia coli M605] gi|331654029|ref|ZP_08355030.1| ribonuclease III [Escherichia coli M718] gi|331658711|ref|ZP_08359655.1| ribonuclease III [Escherichia coli TA206] gi|331664135|ref|ZP_08365045.1| ribonuclease III [Escherichia coli TA143] gi|331669317|ref|ZP_08370165.1| ribonuclease III [Escherichia coli TA271] gi|331674016|ref|ZP_08374779.1| ribonuclease III [Escherichia coli TA280] gi|331678563|ref|ZP_08379238.1| ribonuclease III [Escherichia coli H591] gi|331684217|ref|ZP_08384813.1| ribonuclease III [Escherichia coli H299] gi|332278275|ref|ZP_08390688.1| ribonuclease III [Shigella sp. D9] gi|67472282|sp|P0A7Y0|RNC_ECOLI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|67472283|sp|P0A7Y1|RNC_ECOL6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|67472284|sp|P0A7Y2|RNC_ECO57 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|67472285|sp|P0A7Y3|RNC_SHIFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101643|sp|Q31XS0|RNC_SHIBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101644|sp|Q32CV4|RNC_SHIDS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101645|sp|Q3YYU9|RNC_SHISS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122422869|sp|Q1R8G6|RNC_ECOUT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122958122|sp|Q0TES1|RNC_ECOL5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|123048003|sp|Q0T1T8|RNC_SHIF8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043309|sp|A7ZQ11|RNC_ECO24 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043310|sp|A8A377|RNC_ECOHS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043311|sp|A1AE97|RNC_ECOK1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043312|sp|B1IVR0|RNC_ECOLC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735371|sp|B7MIQ2|RNC_ECO45 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735372|sp|B7NRM0|RNC_ECO7I RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735373|sp|B7M8I0|RNC_ECO8A RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735374|sp|B7N6F5|RNC_ECOLU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735375|sp|B1LP80|RNC_ECOSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735376|sp|B7LUZ7|RNC_ESCF3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741369|sp|B5Z141|RNC_ECO5E RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741370|sp|B6I5E1|RNC_ECOSE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|229564359|sp|B1XB41|RNC_ECODH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238691723|sp|B2TXY0|RNC_SHIB3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807247|sp|B7UH07|RNC_ECO27 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807248|sp|B7LDG0|RNC_ECO55 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807249|sp|B7MYJ8|RNC_ECO81 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|259491899|sp|C4ZYJ0|RNC_ECOBW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|12516984|gb|AAG57682.1|AE005487_6 RNase III, ds RNA [Escherichia coli O157:H7 str. EDL933] gi|26109338|gb|AAN81540.1|AE016764_222 Ribonuclease III [Escherichia coli CFT073] gi|42769|emb|CAA26692.1| unnamed protein product [Escherichia coli] gi|987642|dbj|BAA10914.1| ribonuclease III [Escherichia coli K-12] gi|1033156|gb|AAA79829.1| RNase III [Escherichia coli str. K-12 substr. MG1655] gi|1788920|gb|AAC75620.1| RNase III [Escherichia coli str. K-12 substr. MG1655] gi|13362904|dbj|BAB36856.1| RNase III [Escherichia coli O157:H7 str. Sakai] gi|24053010|gb|AAN44126.1| RNase III [Shigella flexneri 2a str. 301] gi|30042225|gb|AAP17950.1| RNase III [Shigella flexneri 2a str. 2457T] gi|73856606|gb|AAZ89313.1| RNase III [Shigella sonnei Ss046] gi|81242141|gb|ABB62851.1| RNase III, ds RNA [Shigella dysenteriae Sd197] gi|81246430|gb|ABB67138.1| RNase III [Shigella boydii Sb227] gi|85675458|dbj|BAE76743.1| RNase III [Escherichia coli str. K12 substr. W3110] gi|91073467|gb|ABE08348.1| RNase III, ds RNA [Escherichia coli UTI89] gi|110344321|gb|ABG70558.1| ribonuclease III [Escherichia coli 536] gi|110616060|gb|ABF04727.1| RNase III, ds RNA [Shigella flexneri 5 str. 8401] gi|115513912|gb|ABJ01987.1| RNase III [Escherichia coli APEC O1] gi|157067726|gb|ABV06981.1| ribonuclease III [Escherichia coli HS] gi|157079419|gb|ABV19127.1| ribonuclease III [Escherichia coli E24377A] gi|169754078|gb|ACA76777.1| Ribonuclease III [Escherichia coli ATCC 8739] gi|169890011|gb|ACB03718.1| RNase III [Escherichia coli str. K-12 substr. DH10B] gi|170123495|gb|EDS92426.1| ribonuclease III [Escherichia albertii TW07627] gi|170518615|gb|ACB16793.1| ribonuclease III [Escherichia coli SMS-3-5] gi|187429787|gb|ACD09061.1| ribonuclease III [Shigella boydii CDC 3083-94] gi|187770609|gb|EDU34453.1| ribonuclease III [Escherichia coli O157:H7 str. EC4196] gi|188017132|gb|EDU55254.1| ribonuclease III [Escherichia coli O157:H7 str. EC4113] gi|188487921|gb|EDU63024.1| ribonuclease III [Escherichia coli 53638] gi|189003491|gb|EDU72477.1| ribonuclease III [Escherichia coli O157:H7 str. EC4076] gi|189355317|gb|EDU73736.1| ribonuclease III [Escherichia coli O157:H7 str. EC4401] gi|189362280|gb|EDU80699.1| ribonuclease III [Escherichia coli O157:H7 str. EC4486] gi|189368381|gb|EDU86797.1| ribonuclease III [Escherichia coli O157:H7 str. EC4501] gi|189372250|gb|EDU90666.1| ribonuclease III [Escherichia coli O157:H7 str. EC869] gi|189378654|gb|EDU97070.1| ribonuclease III [Escherichia coli O157:H7 str. EC508] gi|190901994|gb|EDV61741.1| ribonuclease III [Escherichia coli B7A] gi|190905707|gb|EDV65329.1| ribonuclease III [Escherichia coli F11] gi|192929337|gb|EDV82946.1| ribonuclease III [Escherichia coli E22] gi|192958298|gb|EDV88738.1| ribonuclease III [Escherichia coli E110019] gi|194412671|gb|EDX28966.1| ribonuclease III [Escherichia coli B171] gi|194419624|gb|EDX35704.1| ribonuclease III [Shigella dysenteriae 1012] gi|194423376|gb|EDX39367.1| ribonuclease III [Escherichia coli 101-1] gi|208727421|gb|EDZ77022.1| ribonuclease III [Escherichia coli O157:H7 str. EC4206] gi|208733235|gb|EDZ81922.1| ribonuclease III [Escherichia coli O157:H7 str. EC4045] gi|208740471|gb|EDZ88153.1| ribonuclease III [Escherichia coli O157:H7 str. EC4042] gi|209162187|gb|ACI39620.1| ribonuclease III [Escherichia coli O157:H7 str. EC4115] gi|209762878|gb|ACI79751.1| RNase III [Escherichia coli] gi|209762880|gb|ACI79752.1| RNase III [Escherichia coli] gi|209762882|gb|ACI79753.1| RNase III [Escherichia coli] gi|209762884|gb|ACI79754.1| RNase III [Escherichia coli] gi|209762886|gb|ACI79755.1| RNase III [Escherichia coli] gi|209913305|dbj|BAG78379.1| ribonuclease III [Escherichia coli SE11] gi|215265983|emb|CAS10392.1| RNase III [Escherichia coli O127:H6 str. E2348/69] gi|217319891|gb|EEC28316.1| ribonuclease III [Escherichia coli O157:H7 str. TW14588] gi|218352927|emb|CAU98726.1| RNase III [Escherichia coli 55989] gi|218355446|emb|CAQ88055.1| RNase III [Escherichia fergusonii ATCC 35469] gi|218361916|emb|CAQ99516.1| RNase III [Escherichia coli IAI1] gi|218366257|emb|CAR04004.1| RNase III [Escherichia coli S88] gi|218371067|emb|CAR18894.1| RNase III [Escherichia coli IAI39] gi|218428247|emb|CAR09164.2| RNase III [Escherichia coli ED1a] gi|218433168|emb|CAR14064.1| RNase III [Escherichia coli UMN026] gi|222034272|emb|CAP77013.1| ribonuclease 3 [Escherichia coli LF82] gi|226901443|gb|EEH87702.1| ribonuclease III [Escherichia sp. 3_2_53FAA] gi|238863504|gb|ACR65502.1| RNase III [Escherichia coli BW2952] gi|242378168|emb|CAQ32942.1| RNase III [Escherichia coli BL21(DE3)] gi|253323578|gb|ACT28180.1| ribonuclease III [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974443|gb|ACT40114.1| ribonuclease III [Escherichia coli B str. REL606] gi|253978610|gb|ACT44280.1| ribonuclease III [Escherichia coli BL21(DE3)] gi|254593917|gb|ACT73278.1| RNase III [Escherichia coli O157:H7 str. TW14359] gi|257755310|dbj|BAI26812.1| RNase III [Escherichia coli O26:H11 str. 11368] gi|257760399|dbj|BAI31896.1| RNase III [Escherichia coli O103:H2 str. 12009] gi|257765610|dbj|BAI37105.1| RNase III [Escherichia coli O111:H- str. 11128] gi|260448353|gb|ACX38775.1| Ribonuclease III [Escherichia coli DH1] gi|281179616|dbj|BAI55946.1| ribonuclease III [Escherichia coli SE15] gi|281601980|gb|ADA74964.1| Ribonuclease 3 [Shigella flexneri 2002017] gi|284922517|emb|CBG35604.1| Ribonuclease III [Escherichia coli 042] gi|290763715|gb|ADD57676.1| Ribonuclease 3 [Escherichia coli O55:H7 str. CB9615] gi|294490667|gb|ADE89423.1| ribonuclease III [Escherichia coli IHE3034] gi|306906363|gb|EFN36878.1| ribonuclease III [Escherichia coli W] gi|307554586|gb|ADN47361.1| ribonuclease III [Escherichia coli ABU 83972] gi|307625885|gb|ADN70189.1| ribonuclease III [Escherichia coli UM146] gi|308927515|gb|EFP72987.1| ribonuclease III [Shigella dysenteriae 1617] gi|309702953|emb|CBJ02284.1| Ribonuclease III [Escherichia coli ETEC H10407] gi|310331782|gb|EFP99017.1| ribonuclease III [Escherichia coli 1827-70] gi|312289903|gb|EFR17791.1| ribonuclease III [Escherichia coli 2362-75] gi|312947138|gb|ADR27965.1| ribonuclease III [Escherichia coli O83:H1 str. NRG 857C] gi|315061886|gb|ADT76213.1| RNase III [Escherichia coli W] gi|315137191|dbj|BAJ44350.1| RNase III [Escherichia coli DH1] gi|315615829|gb|EFU96461.1| ribonuclease III [Escherichia coli 3431] gi|320182108|gb|EFW57012.1| Ribonuclease III [Shigella boydii ATCC 9905] gi|320186366|gb|EFW61100.1| Ribonuclease III [Shigella flexneri CDC 796-83] gi|320188908|gb|EFW63567.1| Ribonuclease III [Escherichia coli O157:H7 str. EC1212] gi|320196403|gb|EFW71027.1| Ribonuclease III [Escherichia coli WV_060327] gi|320200131|gb|EFW74720.1| Ribonuclease III [Escherichia coli EC4100B] gi|320640816|gb|EFX10310.1| ribonuclease III [Escherichia coli O157:H7 str. G5101] gi|320646162|gb|EFX15102.1| ribonuclease III [Escherichia coli O157:H- str. 493-89] gi|320651457|gb|EFX19853.1| ribonuclease III [Escherichia coli O157:H- str. H 2687] gi|320657058|gb|EFX24877.1| ribonuclease III [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320667543|gb|EFX34463.1| ribonuclease III [Escherichia coli O157:H7 str. LSU-61] gi|323159224|gb|EFZ45214.1| ribonuclease III [Escherichia coli E128010] gi|323167799|gb|EFZ53494.1| ribonuclease III [Shigella sonnei 53G] gi|323184553|gb|EFZ69927.1| ribonuclease III [Escherichia coli 1357] gi|323188318|gb|EFZ73610.1| ribonuclease III [Escherichia coli RN587/1] gi|323377533|gb|ADX49801.1| ribonuclease III [Escherichia coli KO11] gi|323936307|gb|EGB32598.1| ribonuclease III [Escherichia coli E1520] gi|323941170|gb|EGB37355.1| ribonuclease III [Escherichia coli E482] gi|323944624|gb|EGB40692.1| ribonuclease III [Escherichia coli H120] gi|323949221|gb|EGB45112.1| ribonuclease III [Escherichia coli H252] gi|323955803|gb|EGB51561.1| ribonuclease III [Escherichia coli H263] gi|323961182|gb|EGB56795.1| ribonuclease III [Escherichia coli H489] gi|323968015|gb|EGB63427.1| ribonuclease III [Escherichia coli M863] gi|323971107|gb|EGB66354.1| ribonuclease III [Escherichia coli TA007] gi|323978403|gb|EGB73488.1| ribonuclease III [Escherichia coli TW10509] gi|324113094|gb|EGC07070.1| ribonuclease III [Escherichia fergusonii B253] gi|324118223|gb|EGC12119.1| ribonuclease III [Escherichia coli E1167] gi|325496353|gb|EGC94212.1| ribonuclease III [Escherichia fergusonii ECD227] gi|326340373|gb|EGD64177.1| Ribonuclease III [Escherichia coli O157:H7 str. 1125] gi|327252277|gb|EGE63949.1| ribonuclease III [Escherichia coli STEC_7v] gi|330912336|gb|EGH40846.1| ribonuclease 3 [Escherichia coli AA86] gi|331039989|gb|EGI12209.1| ribonuclease III [Escherichia coli H736] gi|331042862|gb|EGI15003.1| ribonuclease III [Escherichia coli M605] gi|331048878|gb|EGI20954.1| ribonuclease III [Escherichia coli M718] gi|331054376|gb|EGI26403.1| ribonuclease III [Escherichia coli TA206] gi|331059934|gb|EGI31911.1| ribonuclease III [Escherichia coli TA143] gi|331064511|gb|EGI36422.1| ribonuclease III [Escherichia coli TA271] gi|331069289|gb|EGI40681.1| ribonuclease III [Escherichia coli TA280] gi|331075023|gb|EGI46343.1| ribonuclease III [Escherichia coli H591] gi|331079169|gb|EGI50371.1| ribonuclease III [Escherichia coli H299] gi|332088079|gb|EGI93204.1| ribonuclease III [Shigella boydii 5216-82] gi|332089189|gb|EGI94296.1| ribonuclease III [Shigella dysenteriae 155-74] gi|332100627|gb|EGJ03973.1| ribonuclease III [Shigella sp. D9] gi|332344442|gb|AEE57776.1| ribonuclease III [Escherichia coli UMNK88] gi|332753976|gb|EGJ84350.1| ribonuclease III [Shigella flexneri 4343-70] gi|332755808|gb|EGJ86166.1| ribonuclease III [Shigella flexneri 2747-71] gi|332761960|gb|EGJ92233.1| ribonuclease III [Shigella flexneri K-671] gi|332766568|gb|EGJ96773.1| ribonuclease III [Shigella flexneri 2930-71] Length = 226 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|300311260|ref|YP_003775352.1| dsRNA-specific ribonuclease [Herbaspirillum seropedicae SmR1] gi|300074045|gb|ADJ63444.1| dsRNA-specific ribonuclease (RNAse III) protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 112/221 (50%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+G+ F + SLL++ALTH S S ERLEFLGD +L ++++LLF + Sbjct: 1 MDPQLLQQRLGHTFKDASLLQQALTHRSHS---ALHNERLEFLGDSVLNCVVASLLFERY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 D EG+LS +LV ++ ++A+ L+L+ F+R+ K SI AD +E+L Sbjct: 58 DKIDEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G E A + + +DAKT LQE+ K P+Y V Sbjct: 118 GAIFLDSGFEAARAVIRSLYVPVLEHVDPRTLGKDAKTLLQEFLQGKKIPLPQYNVIATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H F + + L G S+RA EQ AA L+ Sbjct: 178 GAAHSQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALE 218 >gi|148259270|ref|YP_001233397.1| ribonuclease III [Acidiphilium cryptum JF-5] gi|146400951|gb|ABQ29478.1| RNAse III [Acidiphilium cryptum JF-5] Length = 221 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 84/216 (38%), Positives = 124/216 (57%), Gaps = 3/216 (1%) Query: 10 EKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E +G+ FA LL +ALTH S S ERLEF+GDR+LGLLI+ L F +E Sbjct: 6 EALLGHRFARPDLLAQALTHRSAVGQGGLGSNERLEFIGDRVLGLLIAEWLIERFPHERE 65 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L R LVS ++ +++A +A + VS + ++ AD +E+LI ALYL Sbjct: 66 GGLGPRLAHLVSRQSLAEIAEHGGIAGLLSVSPGESRRGVRNRATVLADALEALIGALYL 125 Query: 129 DGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 DGG+E A F+ + + R + +D KT LQE+A A+ V P Y++ R+GP H P Sbjct: 126 DGGLEPARLFIRRIFAPRIDGQPSAPPKDPKTALQEYALARGPVLPAYELVERTGPSHAP 185 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF + V ++G A+G+ +KR AEQ AA ++L++ Sbjct: 186 RFRIRVTVAGRT-AEGLAGTKREAEQNAARDLLEQL 220 >gi|83319588|ref|YP_424465.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535692|sp|Q2SRZ8|RNC_MYCCT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|83283474|gb|ABC01406.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 232 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 106/227 (46%), Gaps = 6/227 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + ++ ++ + ++ALTH+S ++ + SY+RLEFLGD IL + +S LF Sbjct: 1 MNIKNFFEKYNIKINDQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYVSKFLFF 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H+ EGEL+ +S V E+ S++A++++L IR+ SI AD+ E+ Sbjct: 61 HYSKLGEGELTRLRSSTVREESLSRIAKDINLGQLIRLGHGELMTKGYEKQSILADIFEA 120 Query: 122 LIAALYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 L AA+Y+D + + KY K + ++ + + + + + Sbjct: 121 LTAAVYIDQNEDGLLIWLEQTLFKYMKDPTFINVTKDFKSELQELLQSEKRSDLKYIIEN 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 ++ +TV V + G G SK+ AEQ AA++ L + Sbjct: 181 EEFFVNENKTLYTVSVNLDGQKFGVGKGYSKQEAEQNAASDCLSKLK 227 >gi|239928705|ref|ZP_04685658.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672] gi|291437029|ref|ZP_06576419.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672] gi|291339924|gb|EFE66880.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672] Length = 286 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 107/219 (48%), Gaps = 4/219 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 33 LEGRLGYQVE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 91 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R LDL SFIR+ SI AD +E++I A+ Sbjct: 92 PEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 151 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + KS + A G+ + +GPDH Sbjct: 152 YLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 211 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + FT + G++ G SK+ AEQ AA + Sbjct: 212 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRSIK 250 >gi|326382852|ref|ZP_08204542.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395] gi|326198442|gb|EGD55626.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395] Length = 234 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 102/221 (46%), Gaps = 7/221 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L +G + LL ALTH S ++ + ERLEFLGD +LG++++ L+ F Sbjct: 10 LTDVLGVTIDD-ELLTLALTHRSYAYENGGLPTNERLEFLGDAVLGVVVTERLYVGFPDR 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLA---SFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EGEL+ S+V+ + VAR L + +R+ SI AD +ESL Sbjct: 69 PEGELAKIRASVVNMHALADVARGLGEGGLGAHLRLGRGEELTGGRDKASILADGLESLF 128 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSG 182 A++LD GIEVA T + ++ ++SG+ + A+ + +G Sbjct: 129 GAIFLDHGIEVAKTVIMNLFEPIIVRSGRLGAGLDWKTSLQELSAERSLGQPQYQISSTG 188 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH+ FT V + G G +K+ AEQ AA K Sbjct: 189 PDHNKEFTAVAVVGGDELGAGTGKTKKEAEQRAAELAWKAL 229 >gi|152989964|ref|YP_001355686.1| ribonuclease III [Nitratiruptor sp. SB155-2] gi|189043328|sp|A6Q1H0|RNC_NITSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|151421825|dbj|BAF69329.1| ribonuclease III [Nitratiruptor sp. SB155-2] Length = 226 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 71/209 (33%), Positives = 111/209 (53%), Gaps = 6/209 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + EK++GY+F ++ LL++ALTH S + ERLEFLGD +L L++ LF Sbjct: 1 MK--QLEEFEKKLGYSFEDKKLLKEALTHKSYKSPV--NNERLEFLGDAVLDLVVGEYLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EGELS SLV+ E +++A++LD+ +I +S + S+ ++ E Sbjct: 57 KKFPKANEGELSKLRASLVNEEGFAKLAQKLDIGKYIFISQAEENNQGRTKPSLLSNAFE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+YL+ G+E K ++ K +D KT LQE+ A +G+TP YK+ Sbjct: 117 AVMGAIYLEKGLEKVRELSLKLLEEAYPKIDLDSLFKDFKTALQEFTQAHYGITPTYKLL 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGPDH F V V + + S Sbjct: 177 GSSGPDHKKEFEVAVLLHEETISTAKGRS 205 >gi|88812349|ref|ZP_01127599.1| ribonuclease III [Nitrococcus mobilis Nb-231] gi|88790356|gb|EAR21473.1| ribonuclease III [Nitrococcus mobilis Nb-231] Length = 226 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 116/225 (51%), Gaps = 6/225 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + Y L++R+GY F+ +LL +ALTH S + + ERLEFLGD +L +++ +F+ Sbjct: 1 MTVEYDRLQERLGYRFSESTLLVRALTHRSA---FGPNNERLEFLGDSVLNFVVAAEVFD 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 A+EGELS LV+ + + +AREL L +R+ K SI +D +E+ Sbjct: 58 RRKQAREGELSRLRAKLVNQASLADIARELALGEALRLGGGEMKAGGQRRDSILSDTLEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179 ++ A+YLD G + + + + R + R D KT LQE + PEY+V Sbjct: 118 IVGAVYLDAGFAICREVIRRLYGNRLRELPSIRELKDPKTRLQEHLQSIRLPLPEYRVLE 177 Query: 180 RSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G H F V I G G+ S+R AEQ AAA +L+R Sbjct: 178 IAGRAHAQTFQVECRIIGVETVTHGLANSRRQAEQKAAASMLQRL 222 >gi|297626608|ref|YP_003688371.1| ribonuclease III [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922373|emb|CBL56945.1| Ribonuclease III [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 240 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 100/230 (43%), Gaps = 8/230 (3%) Query: 1 MSAL-----RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGL 53 M++ R++ L K +G + LL ALTH S ++ + ERLEFLGD +LG+ Sbjct: 1 MNSSESGSSRFAELIKELGV-PLDAELLGLALTHRSYAYEHGQIPHNERLEFLGDSVLGI 59 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 ++ L+ HF EG L+ ++VS+ + ++VAR L + +++ TS Sbjct: 60 NVTDYLYRHFPDYAEGRLAKLRAAVVSSVSLAEVARSLGIGQLVKLGHGELTTGGRDKTS 119 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 I AD E+LI A+Y+ A + + A P Sbjct: 120 ILADTTEALIGAIYMTDPSGAAKFVHHIFDPLVDRAVKMGAGLDWKTSLQEIAAAMESDP 179 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GPDHD RFT V + G GM +K+ AEQ AA + Sbjct: 180 PEYRISETGPDHDKRFTAVALVDGRTFDPGMGHNKKQAEQHAAENAFRVL 229 >gi|71274462|ref|ZP_00650750.1| Ribonuclease III [Xylella fastidiosa Dixon] gi|71901683|ref|ZP_00683759.1| Ribonuclease III [Xylella fastidiosa Ann-1] gi|170730564|ref|YP_001775997.1| ribonuclease III [Xylella fastidiosa M12] gi|238687923|sp|B0U3D8|RNC_XYLFM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71164194|gb|EAO13908.1| Ribonuclease III [Xylella fastidiosa Dixon] gi|71728553|gb|EAO30708.1| Ribonuclease III [Xylella fastidiosa Ann-1] gi|167965357|gb|ACA12367.1| Ribonuclease III [Xylella fastidiosa M12] Length = 227 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 115/226 (50%), Gaps = 6/226 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + + S ++RIGY F + SLL +AL H S ERLEFLGD ++ LLI+ LF Sbjct: 1 MISSKASDYQQRIGYVFTDPSLLLQALRHCSAG---TPHNERLEFLGDSVVNLLIAEALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + A EG L+ + LV + + +AR + L + + K SI AD VE Sbjct: 58 QRWPRADEGALTRARSELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++IAA+YLD + T V +++ AL GK +D KT LQEW A+ P Y++ Sbjct: 118 AVIAAIYLDADLATCRTVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELI 177 Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 F SG H F V + L +G S+R AEQ AA+ + + Sbjct: 178 FESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAASHAINQL 223 >gi|255994063|ref|ZP_05427198.1| ribonuclease III [Eubacterium saphenum ATCC 49989] gi|255993731|gb|EEU03820.1| ribonuclease III [Eubacterium saphenum ATCC 49989] Length = 252 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 60/229 (26%), Positives = 103/229 (44%), Gaps = 9/229 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTLL 59 LE +I Y F++R+LL ALTH S+ + + + +RLE+LGD IL L+I LL Sbjct: 3 NLDALETKINYKFSDRNLLITALTHVSMLGKVHNMDRKSTNQRLEYLGDAILYLVIGELL 62 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F EG L+ +++V+ + S++A++LDL I + S K + +I AD Sbjct: 63 FIKRPDYDEGNLTKARSNIVNNHSLSEMAKKLDLGRHIEMDSSTEKHMGRRNEAILADTF 122 Query: 120 ESLIAALY----LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 E+L+ A++ + E K ++ A K + + A +Y Sbjct: 123 EALMGAIFLDAGYEKTHEFINKLFIKRIEEAATGEAKADYKTRLQECVHACGITNYYIKY 182 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G H F + ++ ++G+ SK+ A+Q AA + Sbjct: 183 HTISEKGDQHCKTFRIGAYLNNTKLSEGVGKSKKEAQQNAARLFFENMK 231 >gi|119509571|ref|ZP_01628718.1| ribonuclease III [Nodularia spumigena CCY9414] gi|119465760|gb|EAW46650.1| ribonuclease III [Nodularia spumigena CCY9414] Length = 226 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 7/215 (3%) Query: 16 AFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N LL++ALTH S + ++ ERLEFLGD +L + L+ + E E++ Sbjct: 6 NFQNEKLLQQALTHRSYVNENPGEKHNERLEFLGDALLTFISGEYLYTRYPEIAEDEMTR 65 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 R ++LV + ++ A E+ L +R+ +D ++ + ES++ A YLD Sbjct: 66 RRSALVDEKQLAKFAIEVGLDFKMRLGRGAIQDGGFQSPNLLSSAFESVVGAYYLDCDRN 125 Query: 134 VAGTFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPR 188 + +A+ + D+K QEW AKFG +T R G DH P Sbjct: 126 IEKIRPIIADLFNSVPQAIMEIRSNVDSKNRFQEWVQAKFGTLLPKYITERIGGQDHAPE 185 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + V + G K+ AE+ AA L Sbjct: 186 YLAQVFVGEQVYGYGKARGKKEAEKQAAENALSNL 220 >gi|212702556|ref|ZP_03310684.1| hypothetical protein DESPIG_00579 [Desulfovibrio piger ATCC 29098] gi|212673997|gb|EEB34480.1| hypothetical protein DESPIG_00579 [Desulfovibrio piger ATCC 29098] Length = 243 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 104/225 (46%), Gaps = 6/225 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFN 61 +E+ + Y F+ + ALTHSS ++ + Q ERLEFLGD +L L IS LF Sbjct: 15 DLERIERILDYHFSRPERVALALTHSSWANEHGLGQAHNERLEFLGDAVLELCISWELFT 74 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+++ + LV + +Q ARE + +R+ + ++ +DV E+ Sbjct: 75 RFPQAREGDMTRVRSQLVGTTSLAQRARETGIDQLLRLGRGEEQQGGRSRDAVLSDVFEA 134 Query: 122 LIAALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++A++Y DGG A V + + +D KT LQE + A F P Y Sbjct: 135 VLASVYEDGGYAAAQKVVARIFGTLLDEVSVGKPKTKDFKTSLQERSVALFHDRPVYTTL 194 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP+H FTV V + S + AEQ AA L Sbjct: 195 ACEGPEHARHFTVQVSLPSGQQFTASGSSCKKAEQEAARLALCAL 239 >gi|311278500|ref|YP_003940731.1| ribonuclease III [Enterobacter cloacae SCF1] gi|308747695|gb|ADO47447.1| ribonuclease III [Enterobacter cloacae SCF1] Length = 226 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFHHQELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEQLILSWYQSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|152971423|ref|YP_001336532.1| ribonuclease III [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580271|ref|YP_002237090.1| ribonuclease III [Klebsiella pneumoniae 342] gi|288934052|ref|YP_003438111.1| ribonuclease III [Klebsiella variicola At-22] gi|189043322|sp|A6TCI1|RNC_KLEP7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226741374|sp|B5XNH0|RNC_KLEP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|150956272|gb|ABR78302.1| ribonuclease III [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569329|gb|ACI11105.1| ribonuclease III [Klebsiella pneumoniae 342] gi|288888781|gb|ADC57099.1| ribonuclease III [Klebsiella variicola At-22] Length = 226 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 111/213 (52%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFHHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQNVERLILSWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|326402425|ref|YP_004282506.1| ribonuclease III [Acidiphilium multivorum AIU301] gi|325049286|dbj|BAJ79624.1| ribonuclease III [Acidiphilium multivorum AIU301] Length = 221 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 85/216 (39%), Positives = 125/216 (57%), Gaps = 3/216 (1%) Query: 10 EKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E +G+ FA LL +ALTH S S ERLEF+GDR+LGLLI+ L F +E Sbjct: 6 EALLGHRFARPDLLAQALTHRSAVGQGGLGSNERLEFIGDRVLGLLIAEWLIERFPHERE 65 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L R LVS ++ +++A +A + VS + ++ AD +E+LI ALYL Sbjct: 66 GGLGPRLAHLVSRQSLAEIAEHGGIAGLLSVSPGESRRGVRNRATVLADALEALIGALYL 125 Query: 129 DGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 DGG+E A F+ + + R + +D KT LQE+A A+ V P Y++ R+GP H P Sbjct: 126 DGGLEPARLFIRRIFAPRIDGQPSAPPKDPKTALQEYALARGPVLPAYELVERTGPSHAP 185 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF + V ++G A A+G+ +KR AEQ AA ++L++ Sbjct: 186 RFRIRVTVAGRA-AEGLAGTKREAEQNAARDLLEQL 220 >gi|71907657|ref|YP_285244.1| ribonuclease III [Dechloromonas aromatica RCB] gi|90101622|sp|Q47EF7|RNC_DECAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71847278|gb|AAZ46774.1| RNAse III [Dechloromonas aromatica RCB] Length = 222 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 79/216 (36%), Positives = 119/216 (55%), Gaps = 6/216 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 K++ + F++++L ALTH S + ERLEFLGD +L +I+ L++ F EG+ Sbjct: 8 KKLNHCFSDQALFRTALTHRSFG---TPNNERLEFLGDGVLDFVIAASLYHRFPDLPEGD 64 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 LS +LV ET ++A EL++ +F+R+ K + SI AD +E+L A+YLD Sbjct: 65 LSRLRANLVRQETLHRLALELNIGAFLRLGEGELKSGGAQRPSILADALEALFGAIYLDA 124 Query: 131 GIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G E + ++K + LK G+F++DAKT LQEW + P Y + +G H+ R Sbjct: 125 GFEASRAVIEKLFAPLLDDLKPGQFQKDAKTRLQEWLQGRKKALPRYHLLEATGAAHEQR 184 Query: 189 FTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 F + EI A G S+R AEQVAA + LK Sbjct: 185 FEIACEIESPALRTVGHGSSRRIAEQVAAEKALKEL 220 >gi|332017989|gb|EGI58626.1| Ribonuclease 3 [Acromyrmex echinatior] Length = 1326 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 14/228 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T S ++ S +RLEFLGD +L L++S L+ + Sbjct: 1036 KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKY 1095 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T + V +L + + + + T +AD++E+ Sbjct: 1096 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK----TKDRADLLEAF 1151 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA------HAKFGVTPE 174 + ALY+D G++ F D + + + D K++LQ+ P Sbjct: 1152 LGALYVDKGLKYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1211 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 YKV GP + +TV V G A S + AE +A E L++ Sbjct: 1212 YKVIECKGPTNTRVYTVAVYFQGKRLATASGHSIQEAEMNSAKEALEK 1259 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 20/34 (58%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE+ +GY F NR LL+ ALTH S ++ + Sbjct: 805 LDNLERTLGYEFKNRYLLQLALTHPSYRENFGTN 838 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 58/122 (47%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ERLEFLGD ++ L S LF+ F +EG L+ ++V + + +A++L+L ++ Sbjct: 893 HNERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYML 952 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158 + + A+ E+L+ +L+LDGGIEVA + + K + Sbjct: 953 YAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKGEEDLAKVWVNYP 1012 Query: 159 TE 160 Sbjct: 1013 RH 1014 >gi|15291861|gb|AAK93199.1| LD29995p [Drosophila melanogaster] Length = 1071 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 6/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ HF Sbjct: 719 LTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHF 778 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS+ +SLV+ T + V +L + + ++ + + +L Sbjct: 779 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLKTKDRADLLEAFLGALY 838 Query: 124 A----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + + K + P YKV Sbjct: 839 VDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVVE 898 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP + + V V A S + AE AA + L+ Sbjct: 899 ASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 941 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 20/34 (58%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE+ IGY F NR LL+ ALTH S +Y + Sbjct: 487 LDLLEESIGYRFKNRYLLQLALTHPSYKENYGTN 520 Score = 43.4 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 49/98 (50%) Query: 36 YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A++L L Sbjct: 572 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 631 Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 F+ + + A+ E+L+ AL LDGGI+ Sbjct: 632 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 669 >gi|227548991|ref|ZP_03979040.1| ribonuclease III [Corynebacterium lipophiloflavum DSM 44291] gi|227078942|gb|EEI16905.1| ribonuclease III [Corynebacterium lipophiloflavum DSM 44291] Length = 254 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 104/221 (47%), Gaps = 6/221 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLF 60 + ++ L +G +L ALTH S ++ + + ERLEFLGD +LGL ++ L+ Sbjct: 21 RVDHAPLLAALGVEVE-PEILRLALTHRSFANEHGPLPNNERLEFLGDAVLGLSVANSLY 79 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F S E ++S S+VS + VARE+ L + + + SI AD E Sbjct: 80 ERFPSRPESDISKMRASIVSRYGLADVAREIGLGAHVLLGRGEEVTGGRDKDSILADTTE 139 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 +L A+Y G E A V + ++ + + +D KT LQE EY+ T Sbjct: 140 ALFGAIYRQHGFEPARDVVLRLFESKLESATATGRHQDWKTVLQERLAELKAPAAEYRAT 199 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDHD FT V + + +G+ +K+ AEQ AA Sbjct: 200 SV-GPDHDQTFTADVFVGEDSRGRGVGPNKKLAEQEAARIA 239 >gi|195026766|ref|XP_001986330.1| GH21300 [Drosophila grimshawi] gi|193902330|gb|EDW01197.1| GH21300 [Drosophila grimshawi] Length = 1324 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 81/224 (36%), Gaps = 6/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E +G F + LL +A T S +H S +RLEFLGD +L L+ S L+ H Sbjct: 966 DLTKFEDSVGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1025 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + + ++ + + +L Sbjct: 1026 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPQYAVYANPKADLKTKDRADLLEAFLGAL 1085 Query: 123 IA----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + + + K + P YKV Sbjct: 1086 YVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVV 1145 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP + + V V A S + AE AA + L+ Sbjct: 1146 EATGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALEN 1189 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 20/34 (58%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE+ IGY F NR LL+ ALTH S +Y + Sbjct: 735 LDLLEESIGYKFKNRYLLQLALTHPSYKENYGTN 768 Score = 43.0 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 49/98 (50%) Query: 36 YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A++L L Sbjct: 820 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 879 Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 F+ + + A+ E+L+ AL LDGGI+ Sbjct: 880 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 917 >gi|153853253|ref|ZP_01994662.1| hypothetical protein DORLON_00647 [Dorea longicatena DSM 13814] gi|149754039|gb|EDM63970.1| hypothetical protein DORLON_00647 [Dorea longicatena DSM 13814] Length = 235 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 110/226 (48%), Gaps = 5/226 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57 + LE +IGY F + +L KA+ HSS ++ E ERLEFLGD +L L+ S Sbjct: 5 MSKDLKELEGKIGYKFDDFTLFTKAMIHSSYANEKHLPKYECNERLEFLGDAVLELVSSE 64 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF++ EGEL+ S+V + AR+LDL ++ + S+ +D Sbjct: 65 FLFHNNPKLPEGELTKTRASMVCEPALAFCARDLDLGEYLLLGKGEDATGGRKRESVTSD 124 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+YLDGG A F+ ++ + K D+KT LQE A F Y + Sbjct: 125 AMEALIGAIYLDGGFANAKEFIHRFILKDLENK-KLFFDSKTILQEIVQANFKEVISYHL 183 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH+ F V V I G +K+AAEQ AA + + Sbjct: 184 IGEEGPDHNKIFRVAVHIGEEEYGVGEGRTKKAAEQEAAYISILKL 229 >gi|323342032|ref|ZP_08082265.1| ribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464457|gb|EFY09650.1| ribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414] Length = 226 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 68/209 (32%), Positives = 105/209 (50%), Gaps = 4/209 (1%) Query: 19 NRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 N+ L+ A HSS + +E ERLEF+GD +L + +S LF H D EG++++ Sbjct: 16 NKDLINNAFIHSSYVNEAEELLEDNERLEFMGDAVLQICVSERLFKHQDHFNEGDMTLYR 75 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 LV + +Q + +L L ++ + K+ SI AD+ ES I ALYLD GI+ Sbjct: 76 AKLVCEDALAQYSLKLKLNDYLMLGMGEEKNGGRVRVSIIADLFESFIGALYLDSGIDSV 135 Query: 136 GTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 +D + D KT+LQE+ + + Y+V GP + P F VVV+ Sbjct: 136 NRVLDSVMNDAFNELESLSITDYKTKLQEYIQSDSRKSVSYEVINVVGPSNAPEFEVVVK 195 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + L QG SK+ AEQ+AA + ++ Sbjct: 196 LDELIFGQGKGLSKKKAEQMAAKDAFEKL 224 >gi|71737399|ref|YP_276084.1| ribonuclease III [Pseudomonas syringae pv. phaseolicola 1448A] gi|90101635|sp|Q48EV3|RNC_PSE14 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71557952|gb|AAZ37163.1| ribonuclease III [Pseudomonas syringae pv. phaseolicola 1448A] Length = 229 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 78/215 (36%), Positives = 110/215 (51%), Gaps = 6/215 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+ Sbjct: 58 RFPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD G+E A V + +D KT LQE+ ++ P Y+V Sbjct: 118 LIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVD 177 Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V EI+ L ++G S+R AEQ Sbjct: 178 IHGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212 >gi|195581370|ref|XP_002080507.1| GD10519 [Drosophila simulans] gi|194192516|gb|EDX06092.1| GD10519 [Drosophila simulans] Length = 1310 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 6/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ HF Sbjct: 959 LTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1018 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS+ +SLV+ T + V +L + + ++ + + +L Sbjct: 1019 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLKTKDRADLLEAFLGALY 1078 Query: 124 A----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + + K + P YKV Sbjct: 1079 VDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVVE 1138 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP + + V V A S + AE AA + L+ Sbjct: 1139 ASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1181 Score = 43.0 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 49/98 (50%) Query: 36 YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A++L L Sbjct: 812 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 871 Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 F+ + + A+ E+L+ AL LDGGI+ Sbjct: 872 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 909 Score = 42.6 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 17/34 (50%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE+ IGY F NR +L+ A H S Y + Sbjct: 727 LDLLEESIGYRFKNRYILQLANRHPSYKEKYGTN 760 >gi|260598950|ref|YP_003211521.1| ribonuclease III [Cronobacter turicensis z3032] gi|260218127|emb|CBA32925.1| Ribonuclease 3 [Cronobacter turicensis z3032] Length = 236 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 11 MNPIVINRLQRKLGYTFHHQDLLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 67 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 68 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 127 Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 128 ALIGGIFLDSDIQTVERLILTWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 187 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 188 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 220 >gi|295097900|emb|CBK86990.1| RNAse III [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 226 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFHHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|296104242|ref|YP_003614388.1| ribonuclease III [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058701|gb|ADF63439.1| ribonuclease III [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 239 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 14 MNPIVINRLQRKLGYTFHHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 70 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 71 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 130 Query: 121 SLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 131 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 190 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 191 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 223 >gi|302554407|ref|ZP_07306749.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736] gi|302472025|gb|EFL35118.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736] Length = 274 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 23 LEGRLGYKVE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 81 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R LDL SFIR+ SI AD +E++I A+ Sbjct: 82 PEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 141 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + KS + A G+ + +GPDH Sbjct: 142 YLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 201 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G++ G SK+ AEQ AA + Sbjct: 202 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRSI 239 >gi|320325568|gb|EFW81630.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. B076] gi|320327146|gb|EFW83160.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. race 4] gi|330879244|gb|EGH13393.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. race 4] Length = 229 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 77/215 (35%), Positives = 110/215 (51%), Gaps = 6/215 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS LV ET + +AR +L ++R+ S K SI AD +E+ Sbjct: 58 RFPQAREGQLSRLRARLVKGETLALLARGFNLGEYLRLGSGELKSGGFRRESILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD G+E A V + +D KT LQE+ ++ P Y+V Sbjct: 118 LIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVD 177 Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V EI+ L ++G S+R AEQ Sbjct: 178 IQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212 >gi|322378529|ref|ZP_08052977.1| ribonuclease III [Helicobacter suis HS1] gi|321149043|gb|EFX43495.1| ribonuclease III [Helicobacter suis HS1] Length = 216 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 4/212 (1%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 GY F + LL++ALTH S ++ ERLEFLGD +L L+++ +LF F +EG+LS Sbjct: 2 GYVFKDPLLLQQALTHRS--TKAHKNNERLEFLGDAVLDLVVAEILFTRFTDLQEGDLSK 59 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 SLV+ + ++A L+L I +S + SI + E+L+ A+YL+ G+E Sbjct: 60 MRASLVNEKAFFKLALSLNLQDHILISQAEANNNGHTKPSILSSAFEALMGAIYLESGLE 119 Query: 134 VAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 + + L D K+ LQE A+F P Y + SGPDH +F + Sbjct: 120 IIKNLIQDLLDMAYPNLSPKTLFMDYKSALQELTQARFKAIPIYALKSESGPDHAKQFEM 179 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + I SK+ AEQ+ A K+ Sbjct: 180 QIFILNKLYGTCKAGSKKQAEQLCAQVAYKQL 211 >gi|260578984|ref|ZP_05846886.1| ribonuclease III [Corynebacterium jeikeium ATCC 43734] gi|258602849|gb|EEW16124.1| ribonuclease III [Corynebacterium jeikeium ATCC 43734] Length = 244 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 4/207 (1%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL ALTH S ++ + ERLEFLGD +LGL ++ L+ F E ++S + + Sbjct: 36 DLLRLALTHRSFANENGHLPNNERLEFLGDAVLGLAVAEQLYRQFPERAESDISKMRSGV 95 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 V+ + VAR L + +I + SI AD VES++ A+YL G +VA Sbjct: 96 VNMYALADVARHLGMGDYILLGRGEMLTGGKDKHSILADSVESMLGAIYLHHGFDVARAT 155 Query: 139 VDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 V + + ++ ++ + + + GP+HD F V I Sbjct: 156 VLRLFAEKITEAPTTGLTMDWKTVLLEKLSDMKLPLPTYEVRGEGPEHDKTFYATVTIED 215 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKREG 224 L G +K+ AE AA + +++ Sbjct: 216 LV-THGEGHTKKVAEHAAAKQAVQKLN 241 >gi|68536283|ref|YP_250988.1| ribonuclease III [Corynebacterium jeikeium K411] gi|90101621|sp|Q4JUY7|RNC_CORJK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|68263882|emb|CAI37370.1| ribonuclease III [Corynebacterium jeikeium K411] Length = 244 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 4/207 (1%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL ALTH S ++ + ERLEFLGD +LGL ++ L+ F E ++S + + Sbjct: 36 DLLRLALTHRSFANENGHLPNNERLEFLGDAVLGLAVAEQLYRQFPERAESDISKMRSGV 95 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 V+ + VAR L + +I + SI AD VES++ A+YL G EVA Sbjct: 96 VNMYALADVARRLGMGDYILLGRGEMLTGGKDKHSILADSVESMLGAIYLHHGFEVARAT 155 Query: 139 VDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 V + + ++ ++ + + + GP+HD F V I Sbjct: 156 VLRLFAEKITEAPTTGLTMDWKTVLLEKLSDMKLPLPTYEVRGEGPEHDKTFYATVTIED 215 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKREG 224 L G +K+ AE AA + +++ Sbjct: 216 LV-THGEGHTKKVAEHAAAKQAVQKLN 241 >gi|330964520|gb|EGH64780.1| ribonuclease III [Pseudomonas syringae pv. actinidiae str. M302091] Length = 227 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 78/215 (36%), Positives = 110/215 (51%), Gaps = 6/215 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSVSLSRLERQLGYTFKDQELMILALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+ Sbjct: 58 RFPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD G+E A V + +D KT LQE+ ++ P Y+V Sbjct: 118 LIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVD 177 Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V EI+ L ++G S+R AEQ Sbjct: 178 IQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212 >gi|46579851|ref|YP_010659.1| ribonuclease III [Desulfovibrio vulgaris str. Hildenborough] gi|81404810|sp|Q72C44|RNC_DESVH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|46449267|gb|AAS95918.1| ribonuclease III [Desulfovibrio vulgaris str. Hildenborough] Length = 253 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 109/219 (49%), Gaps = 5/219 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62 L+K IG+ F + LL A+THSS ++ E ERLEFLGD +L L +S LF Sbjct: 29 VDELQKTIGHRFGDMELLLTAMTHSSWANEQAVPVEHNERLEFLGDAVLELCVSEELFRR 88 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F SA+EG+L+ + LVS + VAREL L +R+ S+ +D +E++ Sbjct: 89 FPSAREGDLTRMRSRLVSKPSLEGVARELRLDMSLRLGKGEESQGGRERGSLLSDALEAM 148 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A++LD G A V + + +D K++LQE F P Y + Sbjct: 149 LGAVFLDAGYIAAKGVVMRILGPHFPEALVPVRTKDYKSQLQELTQKLFRDRPVYTLLGS 208 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 SGP+HD +F V V + + S + AEQ+AAA Sbjct: 209 SGPEHDKQFDVRVVLPDGTVFEATGPSMKRAEQMAAARA 247 >gi|28871359|ref|NP_793978.1| ribonuclease III [Pseudomonas syringae pv. tomato str. DC3000] gi|213971119|ref|ZP_03399238.1| ribonuclease III [Pseudomonas syringae pv. tomato T1] gi|237798713|ref|ZP_04587174.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806146|ref|ZP_04592850.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6] gi|301381864|ref|ZP_07230282.1| ribonuclease III [Pseudomonas syringae pv. tomato Max13] gi|302063246|ref|ZP_07254787.1| ribonuclease III [Pseudomonas syringae pv. tomato K40] gi|302132832|ref|ZP_07258822.1| ribonuclease III [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999381|sp|Q87XG1|RNC_PSESM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28854610|gb|AAO57673.1| ribonuclease III [Pseudomonas syringae pv. tomato str. DC3000] gi|213924108|gb|EEB57684.1| ribonuclease III [Pseudomonas syringae pv. tomato T1] gi|331015601|gb|EGH95657.1| ribonuclease III [Pseudomonas syringae pv. lachrymans str. M302278PT] gi|331021566|gb|EGI01623.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027259|gb|EGI07314.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6] Length = 229 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 78/215 (36%), Positives = 110/215 (51%), Gaps = 6/215 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSVSLSRLERQLGYTFKDQELMILALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+ Sbjct: 58 RFPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD G+E A V + +D KT LQE+ ++ P Y+V Sbjct: 118 LIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVD 177 Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V EI+ L ++G S+R AEQ Sbjct: 178 IQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212 >gi|195474532|ref|XP_002089545.1| GE19158 [Drosophila yakuba] gi|194175646|gb|EDW89257.1| GE19158 [Drosophila yakuba] Length = 1328 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 6/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ HF Sbjct: 975 LTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1034 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS+ +SLV+ T + V +L + + ++ + + +L Sbjct: 1035 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLKTKDRADLLEAFLGALY 1094 Query: 124 A----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + + K + P YKV Sbjct: 1095 VDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVVE 1154 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP + + V V A S + AE AA + L+ Sbjct: 1155 ASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1197 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 20/34 (58%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE+ IGY F NR LL+ ALTH S +Y + Sbjct: 743 LDLLEESIGYRFKNRYLLQLALTHPSYKENYGTN 776 Score = 43.0 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 49/98 (50%) Query: 36 YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A++L L Sbjct: 828 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 887 Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 F+ + + A+ E+L+ AL LDGGI+ Sbjct: 888 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 925 >gi|329936742|ref|ZP_08286449.1| ribonuclease III [Streptomyces griseoaurantiacus M045] gi|329303972|gb|EGG47855.1| ribonuclease III [Streptomyces griseoaurantiacus M045] Length = 273 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 67/218 (30%), Positives = 107/218 (49%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 30 LEGRLGYRLE-TALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 88 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R L+L SF+R+ SI AD +E++I A+ Sbjct: 89 PEGQLAKLRAAVVNSRALAEVGRGLELGSFVRLGRGEEGTGGRDKASILADTLEAVIGAV 148 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + KS + A G+ + +GPDH Sbjct: 149 YLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVSETGPDH 208 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G++ G SK+ AEQ AA + Sbjct: 209 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRSI 246 >gi|116620923|ref|YP_823079.1| RNAse III [Candidatus Solibacter usitatus Ellin6076] gi|122255019|sp|Q027L3|RNC_SOLUE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116224085|gb|ABJ82794.1| RNAse III [Candidatus Solibacter usitatus Ellin6076] Length = 271 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 107/232 (46%), Gaps = 17/232 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLL 59 LE ++ Y F + LL +ALTHSS+++ + E+LEFLGD +LG LI+ L Sbjct: 8 LELKLDYRFNDPELLRRALTHSSLANENRPGAGVGSPLNDNEQLEFLGDSVLGFLIAEAL 67 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F EG+LS LVSA VAR LDL S++ + ++ D + Sbjct: 68 VRRFPEYHEGDLSRLKAHLVSAAHLHGVARRLDLGSYLELGRSEEMSGGRTKKTLLVDGL 127 Query: 120 ESLIAALYLDGGIE--------VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 E+++AA+YLDGG++ ++ + K+ LQE A + Sbjct: 128 EAIMAAIYLDGGVDAARAFVATHVLDAPFFGDEEAGTDIQPAITNFKSALQELAQTRRLP 187 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P Y V GP+H FTV V + AQ +K+ A Q AA + +R Sbjct: 188 QPRYSVVRERGPEHSKTFTVEVRVGKEWTAQAEGRTKKIAAQRAARGLYERL 239 >gi|29829207|ref|NP_823841.1| ribonuclease III [Streptomyces avermitilis MA-4680] gi|81719920|sp|Q82JT9|RNC_STRAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|29606313|dbj|BAC70376.1| putative ribonuclease III [Streptomyces avermitilis MA-4680] Length = 276 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 24 LEGRLGYKLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 82 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R L+L SFIR+ SI AD +E++I A+ Sbjct: 83 PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 142 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G+E AG V + + KS + A G+ + +GPDH Sbjct: 143 YLDQGLEAAGELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 202 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G++ G SK+ AEQ AA + Sbjct: 203 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRAI 240 >gi|311739750|ref|ZP_07713585.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035] gi|311305566|gb|EFQ81634.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035] Length = 256 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 6/224 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + +S L + +G L ALTH S ++ + ERLEFLGD +LGL +++ L+ Sbjct: 20 VDHSPLLESLGVDLQ-PEHLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVASQLYI 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S E ++S S+VS S +ARE++L I + + SI AD E+ Sbjct: 79 TYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179 + A+Y + G E A + + + ++ + D KT LQE P Y T Sbjct: 139 IFGAIYREHGFETARDVILRLFAEKIDNATVSGRHLDWKTTLQELCAELKAPMPVYSATS 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP+HD F V ++GL G+ +K+ AEQ AA E + Sbjct: 199 -TGPEHDQTFNAVATVAGLTVGNGVGHNKKLAEQQAAQEACQTL 241 >gi|163760595|ref|ZP_02167676.1| putative ribonuclease III [Hoeflea phototrophica DFL-43] gi|162282210|gb|EDQ32500.1| putative ribonuclease III [Hoeflea phototrophica DFL-43] Length = 244 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 131/217 (60%), Positives = 165/217 (76%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E+RIG+ F++ LE+ALTH+S + +YERLEFLGDR+LGL ++ LLF HF +A EG Sbjct: 16 EERIGHQFSSPVRLERALTHASTRTNTNGNYERLEFLGDRVLGLCVAELLFGHFGNATEG 75 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 E+SVR N LVSA+TCS+VA +L L FIR +D++K M +++ADVVESLIAA+YLD Sbjct: 76 EMSVRLNQLVSAQTCSEVADDLGLHEFIRTGADVKKLTGKRMANVRADVVESLIAAIYLD 135 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 G+E A +F+ K+WK RAL RRDAKTELQEWAHA+FGVTP Y+VT R+GPDH+P F Sbjct: 136 AGLEAARSFIHKHWKARALAEDGARRDAKTELQEWAHARFGVTPVYRVTDRAGPDHEPVF 195 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 TV VEI+G PA G SKRAAEQ AA VL+REG+W Sbjct: 196 TVTVEINGAKPASGESSSKRAAEQAAATAVLEREGVW 232 >gi|87311240|ref|ZP_01093362.1| ribonuclease III [Blastopirellula marina DSM 3645] gi|87285980|gb|EAQ77892.1| ribonuclease III [Blastopirellula marina DSM 3645] Length = 243 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 82/217 (37%), Positives = 120/217 (55%), Gaps = 3/217 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S E RIGY F +SLL+ ALTH+S + ES ERLEFLGD ILG ++ LF+ F Sbjct: 15 ISRCEVRIGYEFQEKSLLKSALTHASGASHRLESNERLEFLGDAILGRVVCEALFHSFPH 74 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ + +VS TC++++R L L F+ V + + + ADV E++IAA Sbjct: 75 FLEGDLTRIKSVVVSRLTCAKLSRVLGLEEFLIVGKGMSSSPSVPPS-LLADVFEAIIAA 133 Query: 126 LYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGG + A FV + + SG+ + K+ LQ++A + G TP Y + GP Sbjct: 134 IYLDGGPKPAEDFVLRNLEDEIELAVSGEAGANFKSALQQYAQREHGATPNYLLLDEKGP 193 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 DH F V +++G+ +K+ AEQ AA L Sbjct: 194 DHSKCFQVAAQVAGIRYVAAWGRNKKEAEQRAAQNAL 230 >gi|302537165|ref|ZP_07289507.1| ribonuclease III [Streptomyces sp. C] gi|302446060|gb|EFL17876.1| ribonuclease III [Streptomyces sp. C] Length = 273 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 6/222 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 23 LEGRLGYQLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYTTHPDL 81 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R L+L SFIR+ SI AD +E++I A+ Sbjct: 82 PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 141 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + KS + A G+ + +GPDH Sbjct: 142 YLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLVTETGPDH 201 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + FT + G++ G SK+ AEQ AA + GI T Sbjct: 202 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR--GIRT 241 >gi|283786183|ref|YP_003366048.1| Ribonuclease III [Citrobacter rodentium ICC168] gi|282949637|emb|CBG89256.1| Ribonuclease III [Citrobacter rodentium ICC168] Length = 226 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFTHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGYRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|66047178|ref|YP_237019.1| ribonuclease III [Pseudomonas syringae pv. syringae B728a] gi|257486563|ref|ZP_05640604.1| ribonuclease III [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628144|ref|ZP_06461098.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649890|ref|ZP_06481233.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. 2250] gi|289676656|ref|ZP_06497546.1| ribonuclease III [Pseudomonas syringae pv. syringae FF5] gi|298488677|ref|ZP_07006706.1| Ribonuclease III [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302186917|ref|ZP_07263590.1| ribonuclease III [Pseudomonas syringae pv. syringae 642] gi|75500898|sp|Q4ZPE1|RNC_PSEU2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|63257885|gb|AAY38981.1| Ribonuclease III [Pseudomonas syringae pv. syringae B728a] gi|298156750|gb|EFH97841.1| Ribonuclease III [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330871241|gb|EGH05950.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330898515|gb|EGH29934.1| ribonuclease III [Pseudomonas syringae pv. japonica str. M301072PT] gi|330950056|gb|EGH50316.1| ribonuclease III [Pseudomonas syringae Cit 7] gi|330973032|gb|EGH73098.1| ribonuclease III [Pseudomonas syringae pv. aceris str. M302273PT] gi|330989032|gb|EGH87135.1| ribonuclease III [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010046|gb|EGH90102.1| ribonuclease III [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 229 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 78/215 (36%), Positives = 110/215 (51%), Gaps = 6/215 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+ Sbjct: 58 RFPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD G+E A V + +D KT LQE+ ++ P Y+V Sbjct: 118 LIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVD 177 Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V EI+ L ++G S+R AEQ Sbjct: 178 IQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212 >gi|225621561|ref|YP_002722820.1| ribonuclease III [Brachyspira hyodysenteriae WA1] gi|225216382|gb|ACN85116.1| ribonuclease III [Brachyspira hyodysenteriae WA1] Length = 243 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 7/229 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIS 56 M+ + + + + Y F N+ L +A+TH + ++ ++ +RLEFLGD +L L+IS Sbjct: 1 MNIDKILNNCQTALKYEFRNKDHLLEAITHRTYANESKKKMKYNQRLEFLGDSVLSLIIS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + S+KEG LS +SLVS ++ + +++EL L F+ + + ++ Sbjct: 61 DYLFKKYSSSKEGLLSKVKSSLVSQKSLADISKELKLGDFLLLGHGEEASGGRYRDNMLE 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPE 174 D+ E+++ A+YLD GI A FV + +K+R L F +D KT QE K +P Sbjct: 121 DLFEAIVGAIYLDSGITSASKFVMRAYKERLKNLDIENFDKDYKTIFQELIQKKHKTSPI 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 YK +H+ F V ++ A G+ SK+ AE AA + L + Sbjct: 181 YKSYEYYDNNHE-MFKSEVYVNDKNFALGVGKSKKEAETNAAKKALDKI 228 >gi|290957120|ref|YP_003488302.1| ribonuclease III [Streptomyces scabiei 87.22] gi|260646646|emb|CBG69743.1| putative ribonuclease III [Streptomyces scabiei 87.22] Length = 272 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 24 LEGRLGYKLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 82 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R LDL SFIR+ SI AD +E++I A+ Sbjct: 83 PEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 142 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + KS + A G+ + +GPDH Sbjct: 143 YLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 202 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G++ G SK+ AEQ AA + Sbjct: 203 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRAI 240 >gi|257063721|ref|YP_003143393.1| ribonuclease III [Slackia heliotrinireducens DSM 20476] gi|256791374|gb|ACV22044.1| ribonuclease III [Slackia heliotrinireducens DSM 20476] Length = 300 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 72/219 (32%), Positives = 106/219 (48%), Gaps = 2/219 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 + ++ IG F N +L A+TH S + + SYERLEFLGD ILG +++ F+ Sbjct: 11 KIQRAQEIIGTQFGNTDILLHAITHPSATEGKPVKLSYERLEFLGDSILGAIVANEAFHR 70 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG L+ +LVS + S+VA EL I S + + S +V E++ Sbjct: 71 YPDLDEGGLTRIKVALVSGASLSKVAAELGFEDIIVFGSSEQGTGKRGLHSALENVYEAV 130 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +AALYLD G+E A +FV K R + + + + G+TP YK+ G Sbjct: 131 VAALYLDQGMEGARSFVMKTLVPRMSRELATEPENPKSALQEKLQEEGITPTYKLVETQG 190 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P HD F V A A GM +K+ +E AA L+ Sbjct: 191 PPHDRTFVSQVFAGMKALASGMGRTKKESESQAAKAALE 229 >gi|188533138|ref|YP_001906935.1| ribonuclease III [Erwinia tasmaniensis Et1/99] gi|238691985|sp|B2VI46|RNC_ERWT9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|188028180|emb|CAO96038.1| Ribonuclease III [Erwinia tasmaniensis Et1/99] Length = 226 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 112/213 (52%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINKLQRKLGYTFTHQELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGYRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQAVEQLILSWYASRLDQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG+ P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGTGSSRRK 210 >gi|327394842|dbj|BAK12264.1| ribonuclease III Rnc [Pantoea ananatis AJ13355] Length = 226 Score = 125 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINKLQRKLGYTFTHSELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEKLILDWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG+ P G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210 >gi|195332283|ref|XP_002032828.1| GM20991 [Drosophila sechellia] gi|194124798|gb|EDW46841.1| GM20991 [Drosophila sechellia] Length = 1310 Score = 125 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 81/223 (36%), Gaps = 6/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ HF Sbjct: 959 LTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1018 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS+ +SLV+ T + V +L + F ++ + + +L Sbjct: 1019 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKFAVYANPKADLKTKDRADLLEAFLGALY 1078 Query: 124 A----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + + K + P YKV Sbjct: 1079 VDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVVE 1138 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP + + V V A S + AE AA + L+ Sbjct: 1139 ASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1181 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 20/34 (58%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE+ IGY F NR LL+ ALTH S +Y + Sbjct: 727 LDLLEESIGYRFKNRYLLQLALTHPSYKENYGTN 760 Score = 43.0 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 49/98 (50%) Query: 36 YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A++L L Sbjct: 812 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 871 Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 F+ + + A+ E+L+ AL LDGGI+ Sbjct: 872 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 909 >gi|94497606|ref|ZP_01304175.1| ribonuclease III [Sphingomonas sp. SKA58] gi|94423023|gb|EAT08055.1| ribonuclease III [Sphingomonas sp. SKA58] Length = 227 Score = 125 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 93/215 (43%), Positives = 123/215 (57%), Gaps = 3/215 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ IG A NR+ E+ALTH S +YERLEFLGDRILGLLI +F+ F E Sbjct: 14 LKDLIGRAPHNRATFEQALTHGSA---KPVNYERLEFLGDRILGLLIGEWVFDRFADEPE 70 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS R+N+LVS ETC+ +AR + + + R D + ++ DV+E+LI ALYL Sbjct: 71 GKLSRRYNALVSGETCADIARTAGVPKHLILGKQARDDGAADSDNVLGDVMEALIGALYL 130 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +GG++ A V + W R R K+ LQEWA A PEY++T RSGP H R Sbjct: 131 EGGLDEARALVRRLWGNRVDTQTSAPRHPKSALQEWAAANRRKPPEYQMTDRSGPQHALR 190 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 FTV V I G A SK+ AE AA +L++ Sbjct: 191 FTVAVSIKGAGEASATGASKQEAETAAAKALLEKL 225 >gi|146312695|ref|YP_001177769.1| ribonuclease III [Enterobacter sp. 638] gi|189043313|sp|A4WDD8|RNC_ENT38 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|145319571|gb|ABP61718.1| RNAse III [Enterobacter sp. 638] Length = 226 Score = 125 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 109/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQHHELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEQLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|17137682|ref|NP_477436.1| drosha [Drosophila melanogaster] gi|4868118|gb|AAD31170.1| ribonuclease [Drosophila melanogaster] gi|7304132|gb|AAF59169.1| drosha [Drosophila melanogaster] gi|68051279|gb|AAY84903.1| LD20030p [Drosophila melanogaster] Length = 1327 Score = 125 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 6/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ HF Sbjct: 975 LTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1034 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS+ +SLV+ T + V +L + + ++ + + +L Sbjct: 1035 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLKTKDRADLLEAFLGALY 1094 Query: 124 A----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + + K + P YKV Sbjct: 1095 VDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVVE 1154 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP + + V V A S + AE AA + L+ Sbjct: 1155 ASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1197 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 20/34 (58%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE+ IGY F NR LL+ ALTH S +Y + Sbjct: 743 LDLLEESIGYRFKNRYLLQLALTHPSYKENYGTN 776 Score = 43.0 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 49/98 (50%) Query: 36 YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A++L L Sbjct: 828 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 887 Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 F+ + + A+ E+L+ AL LDGGI+ Sbjct: 888 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 925 >gi|330957807|gb|EGH58067.1| ribonuclease III [Pseudomonas syringae pv. maculicola str. ES4326] Length = 229 Score = 125 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 78/215 (36%), Positives = 110/215 (51%), Gaps = 6/215 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+ Sbjct: 58 RFPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD G+E A V + +D KT LQE+ ++ P Y+V Sbjct: 118 LIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVD 177 Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V EI+ L ++G S+R AEQ Sbjct: 178 IQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212 >gi|194863666|ref|XP_001970553.1| GG23313 [Drosophila erecta] gi|190662420|gb|EDV59612.1| GG23313 [Drosophila erecta] Length = 1329 Score = 125 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 6/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ HF Sbjct: 974 LTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1033 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS+ +SLV+ T + V +L + + ++ + + +L Sbjct: 1034 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLKTKDRADLLEAFLGALY 1093 Query: 124 A----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + + K + P YKV Sbjct: 1094 VDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVVE 1153 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP + + V V A S + AE AA + L+ Sbjct: 1154 ASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1196 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 20/34 (58%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE+ IGY F NR LL+ ALTH S +Y + Sbjct: 742 LDLLEESIGYRFKNRYLLQLALTHPSYKENYGTN 775 Score = 43.0 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 49/98 (50%) Query: 36 YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A++L L Sbjct: 827 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 886 Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 F+ + + A+ E+L+ AL LDGGI+ Sbjct: 887 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 924 >gi|213964554|ref|ZP_03392754.1| ribonuclease III [Corynebacterium amycolatum SK46] gi|213952747|gb|EEB64129.1| ribonuclease III [Corynebacterium amycolatum SK46] Length = 242 Score = 125 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 4/221 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 A+ ++ L ++G SL + ALTH S ++ + ERLEFLGD +LG+ ++ L Sbjct: 18 EAVDHAPLLDKLGVELPEESL-KLALTHRSFANENGMLTNNERLEFLGDAVLGVCVAEEL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F E ++S +V+ + +AR + L I + + + SI AD Sbjct: 77 YRRFPDRAEQDISKMRAGVVNMYALADLARSIGLGEHILLGRGEKATGGADKHSILADTT 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+L+ A+YL G EVA V + + Q + R L + A + Sbjct: 137 EALLGAIYLQHGFEVARETVLRLFNQMIDDAPTESRGRDWKTLLQERLAAKQLPAAEYTV 196 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +GPDHD F V V + G+ G +K+ AE AA + Sbjct: 197 RTTGPDHDLTFYVDVLVDGVVKGSGTGATKKEAEMHAAHQA 237 >gi|300717987|ref|YP_003742790.1| ribonuclease III [Erwinia billingiae Eb661] gi|299063823|emb|CAX60943.1| Ribonuclease III [Erwinia billingiae Eb661] Length = 226 Score = 125 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVITRLQRKLGYTFTHQELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGYRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQNVEKLILEWYASRLEQISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG+ P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGTGSSRRK 210 >gi|332184579|gb|AEE26833.1| Ribonuclease III [Francisella cf. novicida 3523] Length = 230 Score = 125 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 9/222 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS +GY F + +LL +ALTH S +++YERLEFLGD +L +I+ +L+ F Sbjct: 5 YSRFYNILGYKFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFTD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T +Q+A L + +I + I DV E++I A Sbjct: 62 LDEGKLSQLRSKLVKGATLAQLASSLKMDEYII--LGASEQGGHKREKILEDVFEAVIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD + ++++ +D+K++LQE PEY + G Sbjct: 120 IYLDSDFATVKKVILRWYQPIILSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETIEG 179 Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 DH+ FTVV L + S++ AEQ AA ++++ Sbjct: 180 KDHEQEFTVVAMSKDLNLQVKAQGTSRKKAEQKAAEKMIEML 221 >gi|255325275|ref|ZP_05366381.1| ribonuclease III [Corynebacterium tuberculostearicum SK141] gi|255297840|gb|EET77151.1| ribonuclease III [Corynebacterium tuberculostearicum SK141] Length = 256 Score = 125 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 6/224 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + ++ L + +G L ALTH S ++ + ERLEFLGD +LGL +++ L+ Sbjct: 20 VDHTPLLESLGVDLQ-PEHLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVASQLYI 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S E ++S S+VS S +ARE++L I + + SI AD E+ Sbjct: 79 TYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTEA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179 + A+Y + G E A + + + ++ + D KT LQE P Y T Sbjct: 139 IFGAIYREHGFETARDVILRLFAEKIDNATVSGRHLDWKTTLQELCAELKAPMPVYSATS 198 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP+HD F V ++GL G+ +K+ AEQ AA E + Sbjct: 199 -TGPEHDQTFNAVATVAGLTVGNGVGHNKKLAEQQAAQEACQTL 241 >gi|85057423|ref|YP_456339.1| dsRNA-specific ribonuclease [Aster yellows witches'-broom phytoplasma AYWB] gi|123518419|sp|Q2NJY3|RNC_AYWBP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|84789528|gb|ABC65260.1| dsRNA-specific ribonuclease [Aster yellows witches'-broom phytoplasma AYWB] Length = 237 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 9/225 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIST 57 M ++ L + + N L ++ALTHSS S+ QE ERLEFLGD I+GLL++ Sbjct: 1 MKNIQI--LFQTLNIFPKNLVLYKQALTHSSYSNEQTPPQEDNERLEFLGDAIVGLLMAD 58 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ EG ++ + V ++ + A++++L +++ + + + I AD Sbjct: 59 YLY-SQSKEDEGIMTKKRAQAVCEKSLTIYAQKIELQNYLLLGKGEK-NKDFNAKGIMAD 116 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+L A+YLD G A K+ + T +YK+ Sbjct: 117 TFEALFGAIYLDLGYLTAKKVFHNIVLPHLAKTIYIIDFKTQ--LQEIVQSEKKTIQYKI 174 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H F V + G +K++AEQ AA + L + Sbjct: 175 VQEQGPAHSKNFVAEVYLEKNLLGTGEGSTKKSAEQKAAQQALSK 219 >gi|259907677|ref|YP_002648033.1| ribonuclease III [Erwinia pyrifoliae Ep1/96] gi|224963299|emb|CAX54784.1| Ribonuclease III [Erwinia pyrifoliae Ep1/96] gi|283477528|emb|CAY73444.1| RNase III, ds RNA [Erwinia pyrifoliae DSM 12163] gi|310764815|gb|ADP09765.1| ribonuclease III [Erwinia sp. Ejp617] Length = 226 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINKLQRKLGYTFTHQELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEQLILSWYASRLDQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G HD FT+ ++SG+A P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGMADPVVGTGSSRRK 210 >gi|328466160|gb|EGF37317.1| ribonuclease III [Listeria monocytogenes 1816] Length = 222 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 63/213 (29%), Positives = 106/213 (49%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S Sbjct: 1 MN--QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LFN + EG ++ ++V + + A + + ++R+ K ++ A Sbjct: 59 NYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEY 175 DV ES I ALYLD GI+ TF+++ + + D KT+LQE V EY Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + +GP H+ F V ++G +G K Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRQK 211 >gi|294631623|ref|ZP_06710183.1| ribonuclease III [Streptomyces sp. e14] gi|292834956|gb|EFF93305.1| ribonuclease III [Streptomyces sp. e14] Length = 275 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 32 LEGRLGYRLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 90 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R LDL +FIR+ SI AD +E++I A+ Sbjct: 91 PEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 150 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + KS + A G+ + +GPDH Sbjct: 151 YLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 210 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G++ G SK+ AEQ AA + Sbjct: 211 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRAI 248 >gi|238063283|ref|ZP_04607992.1| ribonuclease III [Micromonospora sp. ATCC 39149] gi|237885094|gb|EEP73922.1| ribonuclease III [Micromonospora sp. ATCC 39149] Length = 296 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 64/221 (28%), Positives = 103/221 (46%), Gaps = 7/221 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE G + + LLE+ALTH S ++ + ERLEFLGD +LG++I+T LF++ Sbjct: 14 LEAAFGVSL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDL 72 Query: 67 KEGELSVRFNSLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ S+V+ + VAR L +++ + SI AD +E+L+ Sbjct: 73 PEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEESTGGRDKASILADTLEALL 132 Query: 124 AALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL G++ A + + + A +G+ + A G+ +G Sbjct: 133 GAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPEYRIEGTG 192 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH FT V ++G SK+ AEQ AA + Sbjct: 193 PDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAESAWREL 233 >gi|322420696|ref|YP_004199919.1| ribonuclease III [Geobacter sp. M18] gi|320127083|gb|ADW14643.1| ribonuclease III [Geobacter sp. M18] Length = 224 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 79/210 (37%), Positives = 120/210 (57%), Gaps = 2/210 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE ++GY F+NR LLE+ALTH + ++ + +RLEF GD +L L+S LL F Sbjct: 2 EKLEGKLGYRFSNRELLEEALTHRTYANEAGGKDNQRLEFFGDAVLDFLLSDLLLQRFPD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 ++EGEL+ +LV + +++A L+L + +R+ K S+ AD E+L+AA Sbjct: 62 SREGELTKMRAALVDEVSLARIAAGLELGAALRLGRGEEKGGGRQKRSLLADAFEALLAA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LYLDGG++ A V + ++ + RDAKTELQE A G P Y++ +GPD Sbjct: 122 LYLDGGVDTARRVVHELFEPLLCRPEILCGRDAKTELQERARLLRGKLPRYQLKQVTGPD 181 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 HD RFTV + + +G+ +K+ AEQ Sbjct: 182 HDRRFTVEIFLGSELMGEGVGRTKKEAEQD 211 >gi|292489090|ref|YP_003531977.1| RNase III, ds RNA [Erwinia amylovora CFBP1430] gi|292900214|ref|YP_003539583.1| Ribonuclease III [Erwinia amylovora ATCC 49946] gi|291200062|emb|CBJ47188.1| Ribonuclease III [Erwinia amylovora ATCC 49946] gi|291554524|emb|CBA22094.1| RNase III, ds RNA [Erwinia amylovora CFBP1430] gi|312173248|emb|CBX81503.1| RNase III, ds RNA [Erwinia amylovora ATCC BAA-2158] Length = 226 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINKLQRKLGYTFTHQELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGYRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQRVEQLILSWYASRLDQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G HD FT+ ++SG+A P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGMADPVVGTGSSRRK 210 >gi|182414805|ref|YP_001819871.1| ribonuclease III [Opitutus terrae PB90-1] gi|177842019|gb|ACB76271.1| Ribonuclease III [Opitutus terrae PB90-1] Length = 250 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 99/225 (44%), Gaps = 6/225 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62 + L+ R+ Y F + +LLE+A+TH+S + S +RLEFLGD +L L+++ LF Sbjct: 24 LAALQTRLIYTFRDPALLERAVTHTSYLPENPDIAESNQRLEFLGDAVLQLILTEALFEL 83 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F +EG LS R +L ++AREL L + + S +S D E+L Sbjct: 84 FPGDREGPLSRRRAALTKGAFLVELARELQLDRCLLLGSSEEASGGRTRSSALEDAFEAL 143 Query: 123 IAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQE-WAHAKFGVTPEYKVTF 179 + ALYLD + + V L + K LQE Y+VT Sbjct: 144 VGALYLDSDLALTRRIVLGLYGDLPSRLSGVVNEENPKGRLQELIQPEYGNQALRYEVTG 203 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G DH + V V + G SK+ AE+ AA L+ Sbjct: 204 IEGEDHARAYEVAVFLHDRVLGSGRGPSKKLAEEAAARVALETLK 248 >gi|118587506|ref|ZP_01544930.1| ribonuclease III [Oenococcus oeni ATCC BAA-1163] gi|118431957|gb|EAV38699.1| ribonuclease III [Oenococcus oeni ATCC BAA-1163] Length = 243 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 98/227 (43%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M+ ++ +++ G FAN+ LL +A T + + + E Y+RLEFLGD ++ L+++ Sbjct: 13 MNNIQ-KGIKEDFGIEFANQDLLLEAFTQGNYLNEHPEEKGRDYQRLEFLGDSVMQLIVA 71 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + +EG+L+ ++V +++ S AR +IR+ S+ Sbjct: 72 DYLFTRYPDWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELSGARNRDSLLE 131 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D+ E+ I ALY D G + TF++K + + + K G Sbjct: 132 DIWEAFIGALYKDQGAKAVFTFLNKAFFPAIDEGFFEEFIDYKSKLQELLQKAGSVDIEY 191 Query: 177 VTFRSG--PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P F V V ++ A G S + AE+ AA + + Sbjct: 192 KVENEDLSDPQKPHFEVTVFVNDKAIGSGSGRSIKIAEKRAAKKAYQ 238 >gi|315502406|ref|YP_004081293.1| ribonuclease iii [Micromonospora sp. L5] gi|315409025|gb|ADU07142.1| ribonuclease III [Micromonospora sp. L5] Length = 267 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 64/221 (28%), Positives = 103/221 (46%), Gaps = 7/221 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE G + + LLE+ALTH S ++ + ERLEFLGD +LG++I+T LF++ Sbjct: 14 LEAAFGVSL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDL 72 Query: 67 KEGELSVRFNSLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ S+V+ + VAR L +++ + SI AD +E+L+ Sbjct: 73 PEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEEATGGRDKASILADTLEALL 132 Query: 124 AALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL G++ A + + + A +G+ + A G+ +G Sbjct: 133 GAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPEYRIEGTG 192 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH FT V ++G SK+ AEQ AA + Sbjct: 193 PDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAESAWRTL 233 >gi|302865861|ref|YP_003834498.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029] gi|302568720|gb|ADL44922.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029] Length = 267 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 64/221 (28%), Positives = 103/221 (46%), Gaps = 7/221 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE G + + LLE+ALTH S ++ + ERLEFLGD +LG++I+T LF++ Sbjct: 14 LEAAFGVSL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDL 72 Query: 67 KEGELSVRFNSLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ S+V+ + VAR L +++ + SI AD +E+L+ Sbjct: 73 PEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEEATGGRDKASILADTLEALL 132 Query: 124 AALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL G++ A + + + A +G+ + A G+ +G Sbjct: 133 GAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPEYRIEGTG 192 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH FT V ++G SK+ AEQ AA + Sbjct: 193 PDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAESAWRTL 233 >gi|328885312|emb|CCA58551.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712] Length = 270 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 4/214 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 20 LEGRLGYQLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 78 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ + V REL+L SFIR+ SI AD +E++I A+ Sbjct: 79 PEGQLAKLRAAVVNSRALADVGRELELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 138 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + KS + A G+ + GPDH Sbjct: 139 YLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLVSEEGPDH 198 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + FT + G++ G SK+ AEQ AA Sbjct: 199 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESA 232 >gi|305681508|ref|ZP_07404315.1| ribonuclease III [Corynebacterium matruchotii ATCC 14266] gi|305659713|gb|EFM49213.1| ribonuclease III [Corynebacterium matruchotii ATCC 14266] Length = 259 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 4/225 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 + ++ L +G + +L ALTH S ++ + ERLEFLGD +LGL ++ LF Sbjct: 20 KVDHAPLLAALGVDLPH-DILTLALTHRSFANENGMLPNNERLEFLGDAVLGLSVAGKLF 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + E ++S S+VS + +ARE+ L +I + SI AD E Sbjct: 79 EQYPTRPESDISKMRASIVSRYGLADIAREIGLGQYILLGKGELLTDGRNKDSILADTTE 138 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +L+ A+Y G ++A V + + + + + P Sbjct: 139 ALLGAIYRIHGFDIARDVVLRLFAHKISHAQATALHQDWKTSLQERLAEYKLPMPVYEAT 198 Query: 181 S-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 S GP+H+ FT V + G +G +K+ AEQ A + L+ Sbjct: 199 SVGPEHEQVFTASVNVLGRIIGEGTGTNKKLAEQAGAHQALELLN 243 >gi|225021993|ref|ZP_03711185.1| hypothetical protein CORMATOL_02025 [Corynebacterium matruchotii ATCC 33806] gi|224945279|gb|EEG26488.1| hypothetical protein CORMATOL_02025 [Corynebacterium matruchotii ATCC 33806] Length = 259 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 4/225 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 + ++ L +G + +L ALTH S ++ + ERLEFLGD +LGL ++ LF Sbjct: 20 KVDHAPLLAALGVDLPH-DILTLALTHRSFANENGMLPNNERLEFLGDAVLGLSVAGKLF 78 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + E ++S S+VS + +ARE+ L +I + SI AD E Sbjct: 79 EQYPTRPESDISKMRASIVSRYGLADIAREIGLGQYILLGKGELLTDGRNKDSILADTTE 138 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +L+ A+Y G ++A V + + + + + P Sbjct: 139 ALLGAIYRIHGFDIARDVVLRLFAHKISHAQATALHQDWKTSLQERLAEYKLPMPVYEAT 198 Query: 181 S-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 S GP+H+ FT V + G +G +K+ AEQ A + L+ Sbjct: 199 SVGPEHEQVFTASVNVLGRIIGEGTGTNKKLAEQAGAHQALELLN 243 >gi|241668007|ref|ZP_04755585.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876541|ref|ZP_05249251.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842562|gb|EET20976.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 230 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 9/222 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS L K +GY+F N +LL +ALTH S +++YERLEFLGD ILG +I+ +L+ F Sbjct: 5 YSRLYKILGYSFKNYTLLVRALTHRS---KTKKNYERLEFLGDSILGFVIAEVLYMEFPD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T + +A L +I + I DV E++I A Sbjct: 62 LAEGKLSQIRSKLVKGVTLANLALNFKLDEYII--LGASEQGGHKREKILEDVFEAIIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD + ++K +D+K++LQE PEY + G Sbjct: 120 IYLDSDFATVKKVIVNWYKPVISTLNLDDVKVKDSKSKLQEILLQNGLSLPEYSIETIDG 179 Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 DH+ FTV + L + S++ AEQ AA ++++ Sbjct: 180 KDHEQEFTVKALSNDLNIKVRAKGTSRKKAEQKAAEKMIQIL 221 >gi|167627437|ref|YP_001677937.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189043314|sp|B0TXH8|RNC_FRAP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|167597438|gb|ABZ87436.1| Ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 230 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 9/222 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS L K +GY+F N +LL +ALTH S +++YERLEFLGD ILG +I+ +L+ F Sbjct: 5 YSRLYKILGYSFKNYTLLVRALTHRS---KTKKNYERLEFLGDSILGFVIAEVLYMEFPD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T + +A L +I + I DV E++I A Sbjct: 62 LAEGKLSQIRSKLVKGVTLANLALNFKLDEYII--LGASEQGGHKREKILEDVFEAIIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD + ++K +D+K++LQE PEY + G Sbjct: 120 IYLDSDFATVKKVIVNWYKPVISTLNLDDVKVKDSKSKLQEILLQNGLSLPEYSIETIDG 179 Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 DH+ FTV + L + S++ AEQ AA ++++ Sbjct: 180 KDHEQEFTVKALSNDLNIEVRAKGTSRKKAEQKAAEKMIQIL 221 >gi|291454392|ref|ZP_06593782.1| ribonuclease III [Streptomyces albus J1074] gi|291357341|gb|EFE84243.1| ribonuclease III [Streptomyces albus J1074] Length = 265 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 25 LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 83 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V+R L+L SFIR+ SI AD +E++I A+ Sbjct: 84 PEGQLAKLRAAVVNSRALAEVSRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 143 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G+E AG V + + KS + A G+ + +GPDH Sbjct: 144 YLDQGLEAAGELVHRLFDPLIEKSSSLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 203 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G++ G SK+ AEQ AA + Sbjct: 204 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRAI 241 >gi|239982550|ref|ZP_04705074.1| ribonuclease III [Streptomyces albus J1074] Length = 260 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 20 LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 78 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V+R L+L SFIR+ SI AD +E++I A+ Sbjct: 79 PEGQLAKLRAAVVNSRALAEVSRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 138 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G+E AG V + + KS + A G+ + +GPDH Sbjct: 139 YLDQGLEAAGELVHRLFDPLIEKSSSLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 198 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G++ G SK+ AEQ AA + Sbjct: 199 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRAI 236 >gi|149192067|ref|ZP_01870292.1| ribonuclease III [Vibrio shilonii AK1] gi|148834092|gb|EDL51104.1| ribonuclease III [Vibrio shilonii AK1] Length = 225 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 107/213 (50%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ LEK++GY F + LL ALTH S ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-SIERLEKKLGYHFNDSELLMLALTHRSA---NGNHNERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE L ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGNTLAELGREFVLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD +E+ V ++ R ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDVEMVRKIVLSWYMTRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ FTV E++G+ P G S+R Sbjct: 177 NIKGEAHNQEFTVSCEVAGVDEPVIGRGTSRRK 209 >gi|194757473|ref|XP_001960989.1| GF13644 [Drosophila ananassae] gi|190622287|gb|EDV37811.1| GF13644 [Drosophila ananassae] Length = 1303 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 86/220 (39%), Gaps = 3/220 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + E+ IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ HF Sbjct: 955 LTKFEESIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1014 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS+ +SLV+ T + V +L + + +DL+ + + + Sbjct: 1015 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPQYANPKADLKTKDRADLLEAFLGALYVDK 1074 Query: 124 AALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 LY + + + + K + P YKV SG Sbjct: 1075 GLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVVEASG 1134 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P + + V V A S + AE AA + L+ Sbjct: 1135 PTNTRVYKVAVYFRSKRLATSNGSSIQQAEMNAAKQALEN 1174 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 15/34 (44%), Positives = 20/34 (58%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE+ IG+ F NR LL+ ALTH S +Y + Sbjct: 723 LDLLEESIGHRFKNRYLLQLALTHPSYKENYGTN 756 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 49/98 (50%) Query: 36 YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A++L L Sbjct: 808 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 867 Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 F+ + + A+ E+L+ AL LDGGI+ Sbjct: 868 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 905 >gi|154493472|ref|ZP_02032792.1| hypothetical protein PARMER_02811 [Parabacteroides merdae ATCC 43184] gi|154086682|gb|EDN85727.1| hypothetical protein PARMER_02811 [Parabacteroides merdae ATCC 43184] Length = 301 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 110/230 (47%), Gaps = 11/230 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M+ YS+L K +G+ N L E+A H S S + + ERLEFLGD +L +++ Sbjct: 15 MNKEPYSSLYKILGFYPDNIHLYEQAFLHKSSSVESGDGRWLNNERLEFLGDAVLDAVVA 74 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +++ HF + +EG L+ + +V ET ++VA EL L + S+ L + Sbjct: 75 DIVYKHFQNKREGFLTNTRSKIVQRETMNRVAVELGLDKMVVYSAKLSSHNN----HMYG 130 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTP 173 + +E+LI A+YLD G EV F+ ++ + + + K+ L EW+ Sbjct: 131 NALEALIGAIYLDQGYEVCYNFIQNVLIKKHVNLETIARKEVNFKSSLIEWSQKNKLEIS 190 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + D +P F V +S G+ SK+ ++Q AA +K+ Sbjct: 191 FDLIESFTDNDGNPVFQTGVTLSDTQIGVGIGYSKKESQQSAAKMAIKKL 240 >gi|116490531|ref|YP_810075.1| dsRNA-specific ribonuclease [Oenococcus oeni PSU-1] gi|290889932|ref|ZP_06553019.1| hypothetical protein AWRIB429_0409 [Oenococcus oeni AWRIB429] gi|122277282|sp|Q04GL2|RNC_OENOB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116091256|gb|ABJ56410.1| RNAse III [Oenococcus oeni PSU-1] gi|290480542|gb|EFD89179.1| hypothetical protein AWRIB429_0409 [Oenococcus oeni AWRIB429] Length = 231 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M+ ++ +++ G FAN+ LL +A T + + + E Y+RLEFLGD ++ L+++ Sbjct: 1 MNNIQ-KGIKEDFGIEFANQDLLLEAFTQGNYLNEHPEEKGRDYQRLEFLGDSVMQLIVA 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + + +EG+L+ ++V +++ S AR +IR+ S+ Sbjct: 60 DYLFTRYPAWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELSGARNRDSLLE 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D+ E+ I ALY D G + TF++K + + + K G Sbjct: 120 DIWEAFIGALYKDQGAKAVFTFLNKAFFPAIDEGFFEEFIDYKSKLQELLQKAGSVDIEY 179 Query: 177 VTFRSG--PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P F V V ++ A G S + AE+ AA + + Sbjct: 180 KVENEDLSDPQKPHFEVTVFVNDKAIGSGSGRSIKIAEKRAAKKAYQ 226 >gi|258544604|ref|ZP_05704838.1| ribonuclease III [Cardiobacterium hominis ATCC 15826] gi|258520146|gb|EEV89005.1| ribonuclease III [Cardiobacterium hominis ATCC 15826] Length = 221 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 73/217 (33%), Positives = 113/217 (52%), Gaps = 7/217 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ + Y F + +LL +ALTH S S + ERLEFLGD +L + S ++ + E Sbjct: 4 LEQALNYRFTDTALLTRALTHRSHS---AKHNERLEFLGDALLETISSIWIYQNRRDVPE 60 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ ++VS E + +AR L+L + + S K + SI AD VE+LIAA+YL Sbjct: 61 GDLTRLRATIVSGENLAAIARRLNLGQHLHLGSGELKSGGARRNSILADAVEALIAAVYL 120 Query: 129 DGG---IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D E + K ++ +DAKT+LQE+ + P+Y++T SGP+H Sbjct: 121 DSDYPTCEHITLALLKDDLSALPQTATRLKDAKTQLQEYLQGRGLPLPDYQITEESGPEH 180 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F + A S++ AEQ AAA++L + Sbjct: 181 AREFQIEATSGDYR-AIAHGSSRKKAEQQAAADLLAQ 216 >gi|282861354|ref|ZP_06270419.1| ribonuclease III [Streptomyces sp. ACTE] gi|282564012|gb|EFB69549.1| ribonuclease III [Streptomyces sp. ACTE] Length = 274 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 67/218 (30%), Positives = 106/218 (48%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 23 LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 81 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R LDL SFIR+ SI AD +E++I A+ Sbjct: 82 PEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 141 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + +S + A + + +GPDH Sbjct: 142 YLDQGLDAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLVTETGPDH 201 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G++ G SK+ AEQ AA + Sbjct: 202 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWREI 239 >gi|297202624|ref|ZP_06920021.1| ribonuclease III [Streptomyces sviceus ATCC 29083] gi|197713199|gb|EDY57233.1| ribonuclease III [Streptomyces sviceus ATCC 29083] Length = 272 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+N Sbjct: 19 LEGRLGYKLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYNTHPDL 77 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R LDL SFIR+ SI AD +E++I A+ Sbjct: 78 PEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 137 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + KS + A G+ + +GPDH Sbjct: 138 YLDQGLKAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 197 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G++ G SK+ AEQ AA + Sbjct: 198 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRSI 235 >gi|302342152|ref|YP_003806681.1| ribonuclease III [Desulfarculus baarsii DSM 2075] gi|301638765|gb|ADK84087.1| ribonuclease III [Desulfarculus baarsii DSM 2075] Length = 237 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 121/228 (53%), Gaps = 8/228 (3%) Query: 1 MSALRY---STLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLL 54 M R L ++G+ F++ + L++AL HSS H S ERLEFLGD +L L+ Sbjct: 1 MDQTRLDMLKQLADQVGHGFSDWTALDEALRHSSFVHENPQRGPSNERLEFLGDAVLELV 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ++ LF FD A EG+LS +S+V+ ++ AR++DL I + + TSI Sbjct: 61 VTQELFLRFDQASEGQLSRARSSVVNEARLAEAARQIDLGPCILLGKGEQGQGGQEKTSI 120 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVT 172 AD +E+++AA+YLDGG+E A V + RRD KT LQE +T Sbjct: 121 LADALEAVLAAVYLDGGLEAARDCVLALLGPLDERVIDRAPRRDYKTMLQERVQEDLRLT 180 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P Y+ SGPDHD F+V +EI+ A G SK+ AEQ AA L Sbjct: 181 PRYRTIDESGPDHDKTFSVSIEINDRQLAMGAGKSKKEAEQNAARRGL 228 >gi|297191816|ref|ZP_06909214.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486] gi|197722006|gb|EDY65914.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486] Length = 296 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 111/225 (49%), Gaps = 4/225 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 +A ++ LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L Sbjct: 9 NASSHTLLEGRLGYQLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 67 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + EG+L+ ++V++ ++V R L+L SFIR+ SI AD + Sbjct: 68 YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 127 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLD G++ A V + + KS + A G+ + Sbjct: 128 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLV 187 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GPDH+ FT + G++ G SK+ AEQ AA + Sbjct: 188 TETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWREI 232 >gi|21223928|ref|NP_629707.1| ribonuclease III [Streptomyces coelicolor A3(2)] gi|256784973|ref|ZP_05523404.1| ribonuclease III [Streptomyces lividans TK24] gi|7531197|sp|Q9ZBQ7|RNC_STRCO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|4007731|emb|CAA22415.1| ribonuclease III [Streptomyces coelicolor A3(2)] Length = 272 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 30 LEGRLGYQLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 88 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R L+L SFIR+ SI AD +E++I A+ Sbjct: 89 PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 148 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + KS + A G+ + +GPDH Sbjct: 149 YLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 208 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G++ G SK+ AEQ AA + Sbjct: 209 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRSI 246 >gi|289768866|ref|ZP_06528244.1| ribonuclease III [Streptomyces lividans TK24] gi|289699065|gb|EFD66494.1| ribonuclease III [Streptomyces lividans TK24] Length = 276 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 34 LEGRLGYQLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 92 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R L+L SFIR+ SI AD +E++I A+ Sbjct: 93 PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 152 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + KS + A G+ + +GPDH Sbjct: 153 YLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 212 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G++ G SK+ AEQ AA + Sbjct: 213 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRSI 250 >gi|313224789|emb|CBY20581.1| unnamed protein product [Oikopleura dioica] Length = 538 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 7/225 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 R + LE+ +G F N LL KALT + + + +RLEFLGD I L + LF H Sbjct: 210 RCAELEELLGVKFKNIRLLAKALTLKNVKYNDITKGHNQRLEFLGDAICNFLAAEYLFKH 269 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ ++V A T + VA+++ L F+ L D + I AD++ES Sbjct: 270 FPLHHEGHLTLLRCTMVGAPTQALVAQQIGLDKFVISRQSLSHDKMGWKQKILADLMESF 329 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I AL++D GI F+ + R + D K+ LQ+ + Sbjct: 330 IGALFIDRGIIAVDVFMKVAFYPRLKHFIMSQVWNDPKSCLQQCCLTLRPEEGTPDLPEY 389 Query: 181 ---SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + R+ V V G +G S + AE+ AA + L++ Sbjct: 390 RTTTSNSSKMRYRVEVFFRGERIGEGHGPSIQLAEKFAARKALEK 434 Score = 43.4 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 1/143 (0%) Query: 26 ALTHSSISHSYQESY-ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 AL +S +Y ER EFLGD +LG ++S +F+ F + EG LS+ +LV Sbjct: 54 ALLGTSEPKESPINYLERPEFLGDAVLGFVVSVSIFHLFPNLGEGALSMLRCALVCNVHL 113 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 + +A++L L + + + A+ E+++ A+Y+DGG+E + + Sbjct: 114 AALAQKLTLEDYFVYIHSQDLAKREDLNNALANCFEAVLGAIYMDGGLEPVRQLLARVLF 173 Query: 145 QRALKSGKFRRDAKTELQEWAHA 167 + LQ+ Sbjct: 174 DDKALQRVWLDFPAHPLQQEYPD 196 >gi|302878420|ref|YP_003846984.1| ribonuclease III [Gallionella capsiferriformans ES-2] gi|302581209|gb|ADL55220.1| ribonuclease III [Gallionella capsiferriformans ES-2] Length = 229 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 112/228 (49%), Gaps = 7/228 (3%) Query: 1 MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + Y+ L +++GY F LL++ALTH S + + ERLEFLGD ILG +I+ L Sbjct: 1 MRPDKGYTELCRQLGYVFIQPQLLQRALTHRSFA---PDHNERLEFLGDSILGCVIAKHL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ EG+LS ++LV T A++L+L + +++ K SI AD V Sbjct: 58 YSQHPDLTEGDLSRLRSNLVKESTLVLFAQQLNLGAQLKLGEGELKSGGHKRPSILADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+L A+++DGG A V + + +DAKT LQE+ + + P Y V Sbjct: 118 EALFGAIFIDGGYVAAEAAVLNLFVPYLAKVDMKTLGKDAKTLLQEYLQGRRQLLPVYSV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREG 224 G H+ F V I L + G S+R AEQ AA + G Sbjct: 178 VDTLGVAHEQLFQVECTIPSLKISTRGAGTSRRNAEQQAALAAYQLIG 225 >gi|242280465|ref|YP_002992594.1| ribonuclease III [Desulfovibrio salexigens DSM 2638] gi|242123359|gb|ACS81055.1| ribonuclease III [Desulfovibrio salexigens DSM 2638] Length = 234 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 117/224 (52%), Gaps = 5/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 +S L++ I Y F+ L ALTHSS ++ E ERLEFLGD +L L ++ LF Sbjct: 4 DFSRLQQGIHYRFSQVKHLATALTHSSWANEQPEPVEDNERLEFLGDAVLELCVTEELFK 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A EG+L+ + LV ++ + +ARELD+ F+++ +S+ AD +E+ Sbjct: 64 RFKGAHEGQLTKIRSKLVKEKSLATIARELDINDFLKLGRGEEAQGGRNRSSLLADAMEA 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTF 179 +I A++LDGG A F+ + + + + K +D K++LQE A+F P Y +T Sbjct: 124 VIGAVFLDGGYAEAQKFIMRIFANKWPATFKIESSKDFKSKLQEVTQARFKERPTYVLTG 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP+H+ F V + + S + AEQ AAA+ L Sbjct: 184 TKGPEHEKIFMVNLNLPDGKSFDSEGSSLKKAEQTAAAKALDYL 227 >gi|198459728|ref|XP_001361471.2| GA21287 [Drosophila pseudoobscura pseudoobscura] gi|198136788|gb|EAL26049.2| GA21287 [Drosophila pseudoobscura pseudoobscura] Length = 1292 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 81/224 (36%), Gaps = 6/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ H Sbjct: 939 DLTKFEDSIGLKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLISSEYLYRH 998 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + + ++ + + SL Sbjct: 999 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTKYAVYANPKADLKTKDRADLLEAFLGSL 1058 Query: 123 IA----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + + + K + P YKV Sbjct: 1059 YVDKGLLFCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVV 1118 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP + + V V A S + AE AA + L+ Sbjct: 1119 EASGPTNTRVYKVAVYFRSKRLATSSGASIQQAEMNAAKQALEN 1162 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 20/34 (58%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE+ IGY F NR LL+ ALTH S +Y + Sbjct: 708 LDLLEESIGYQFKNRYLLQLALTHPSYKENYGTN 741 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 49/98 (50%) Query: 36 YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A++L L Sbjct: 793 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 852 Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 F+ + + A+ E+L+ AL LDGGI+ Sbjct: 853 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 890 >gi|90416440|ref|ZP_01224371.1| ribonuclease III [marine gamma proteobacterium HTCC2207] gi|90331639|gb|EAS46867.1| ribonuclease III [marine gamma proteobacterium HTCC2207] Length = 225 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 116/225 (51%), Gaps = 6/225 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 A L+ R+ Y F++ LL AL+H S + ERLEFLGD +LG+ IS+ LF Sbjct: 1 MASNAKQLQDRLQYQFSDPQLLTLALSHRSCG---SNNNERLEFLGDAVLGMAISSFLFQ 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS + +V AE+ +++AR+LDL + + K SI D VE+ Sbjct: 58 RFPEAREGDLSRIRSQVVRAESLAEIARKLDLGPELLLGPGEMKSGGHRRDSILGDTVEA 117 Query: 122 LIAALYLDGG--IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A++LD G A L +DAKT LQEW A+ PEY+V Sbjct: 118 LLGAVFLDQGLVAVEACVQNWFGASLNTLTLDTPVKDAKTALQEWLQARGKPLPEYRVVK 177 Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G DH FT+ +I + A+ S+R AEQ+ A +++K+ Sbjct: 178 TEGEDHSRLFTMSCKIDAVDETAEATASSRRKAEQLVAEKLVKKL 222 >gi|302558162|ref|ZP_07310504.1| ribonuclease III [Streptomyces griseoflavus Tu4000] gi|302475780|gb|EFL38873.1| ribonuclease III [Streptomyces griseoflavus Tu4000] Length = 272 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 19 LEGRLGYRLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 77 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R L+L SFIR+ SI AD +E++I A+ Sbjct: 78 PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 137 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + KS + A G+ + +GPDH Sbjct: 138 YLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 197 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G++ G SK+ AEQ AA + Sbjct: 198 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRSI 235 >gi|49081844|gb|AAT50322.1| PA0770 [synthetic construct] Length = 230 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 77/216 (35%), Positives = 112/216 (51%), Gaps = 7/216 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS LE+++GY F +R L+ ALTH S + + ERLEFLGD IL +I LF Sbjct: 1 MSN-SLDRLERKLGYTFKDRDLMVLALTHRSYA---GRNNERLEFLGDAILNFVIGEALF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +HF A+EG+LS LV ET + +AR ++ ++R+ S K SI AD +E Sbjct: 57 HHFPQAREGQLSRLRARLVKGETLALLARGFEVGDYLRLGSGELKSGGFRRESILADAME 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD G++ A + + + +D KT LQE+ ++ P Y+V Sbjct: 117 ALIGAIYLDTGMDSARERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRGCDLPRYEVV 176 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213 G H F V E++ L+ G S+R AEQ Sbjct: 177 DIQGEPHCRTFFVDCEVALLSDKTHGHGGSRRIAEQ 212 >gi|15595967|ref|NP_249461.1| ribonuclease III [Pseudomonas aeruginosa PAO1] gi|107100231|ref|ZP_01364149.1| hypothetical protein PaerPA_01001254 [Pseudomonas aeruginosa PACS2] gi|116048686|ref|YP_792514.1| ribonuclease III [Pseudomonas aeruginosa UCBPP-PA14] gi|218893287|ref|YP_002442156.1| ribonuclease III [Pseudomonas aeruginosa LESB58] gi|254239132|ref|ZP_04932455.1| ribonuclease III [Pseudomonas aeruginosa C3719] gi|254245025|ref|ZP_04938347.1| ribonuclease III [Pseudomonas aeruginosa 2192] gi|296390880|ref|ZP_06880355.1| ribonuclease III [Pseudomonas aeruginosa PAb1] gi|313105592|ref|ZP_07791858.1| ribonuclease III [Pseudomonas aeruginosa 39016] gi|7531195|sp|Q9XCX9|RNC_PSEAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122257792|sp|Q02HS2|RNC_PSEAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226735378|sp|B7UYX2|RNC_PSEA8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|5114183|gb|AAD40229.1|AF123492_1 RNase III [Pseudomonas aeruginosa] gi|9946659|gb|AAG04159.1|AE004512_2 ribonuclease III [Pseudomonas aeruginosa PAO1] gi|115583907|gb|ABJ09922.1| ribonuclease III [Pseudomonas aeruginosa UCBPP-PA14] gi|126171063|gb|EAZ56574.1| ribonuclease III [Pseudomonas aeruginosa C3719] gi|126198403|gb|EAZ62466.1| ribonuclease III [Pseudomonas aeruginosa 2192] gi|218773515|emb|CAW29327.1| ribonuclease III [Pseudomonas aeruginosa LESB58] gi|310878360|gb|EFQ36954.1| ribonuclease III [Pseudomonas aeruginosa 39016] Length = 229 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 77/216 (35%), Positives = 112/216 (51%), Gaps = 7/216 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS LE+++GY F +R L+ ALTH S + + ERLEFLGD IL +I LF Sbjct: 1 MSN-SLDRLERKLGYTFKDRDLMVLALTHRSYA---GRNNERLEFLGDAILNFVIGEALF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +HF A+EG+LS LV ET + +AR ++ ++R+ S K SI AD +E Sbjct: 57 HHFPQAREGQLSRLRARLVKGETLALLARGFEVGDYLRLGSGELKSGGFRRESILADAME 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD G++ A + + + +D KT LQE+ ++ P Y+V Sbjct: 117 ALIGAIYLDTGMDSARERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRGCDLPRYEVV 176 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213 G H F V E++ L+ G S+R AEQ Sbjct: 177 DIQGEPHCRTFFVDCEVALLSDKTHGHGGSRRIAEQ 212 >gi|295111283|emb|CBL28033.1| ribonuclease III, bacterial [Synergistetes bacterium SGP1] Length = 251 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62 + L+ +GY+F + LLE+AL H+S ++ + S ERLEFLGD +LG +++ L+ Sbjct: 27 DLAALQAALGYSFRDEGLLEEALCHASFANEHGLAVSNERLEFLGDSVLGFVVARALYRL 86 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A+EG+L+ + LV + AREL+L I + TS+ D VE+L Sbjct: 87 YPEAREGDLTQKRAELVCGRSLRDRARELNLPPLILH--GHSVRDEALPTSMCEDAVEAL 144 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + A+ LDGG++ A + + + Q A + K+ LQ W A+ P Y++ +G Sbjct: 145 LGAVCLDGGVQAAEGVIGRLFLQEAEVRAETDVSPKSRLQTWLQARRIPLPTYELVSVTG 204 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P H P F V + ++G+ +++ AE AA VL+ Sbjct: 205 PSHAPSFRVRLRVNGVEH-TACGSTRKGAESDAAERVLEDL 244 >gi|288941442|ref|YP_003443682.1| ribonuclease III [Allochromatium vinosum DSM 180] gi|288896814|gb|ADC62650.1| ribonuclease III [Allochromatium vinosum DSM 180] Length = 225 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 113/226 (50%), Gaps = 7/226 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+A L + +G+ F LL +ALTH S+ + ERLEFLGD ++G +I+ L+ Sbjct: 1 MNA-DPRRLAQALGHRFTREELLIQALTHRSVG---SSNNERLEFLGDALIGFVIAEALW 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EG LS SLV E+ +++AR+L L +R+ + + SI AD +E Sbjct: 57 ERFPKADEGTLSRMRASLVKRESLARLARDLKLGDSLRLGAGELRTGGHARDSILADALE 116 Query: 121 SLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+YLD G E T + + + +D KT LQEW + PEY V Sbjct: 117 AVLGAVYLDAGFERTRTVVLELFAARLEQTDAERAGKDPKTRLQEWLQSYKRPLPEYLVL 176 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G HD F V ++ +G S+R AEQ AA +L+R Sbjct: 177 SIDGDQHDQTFIVSCQLQDADVTTRGTGTSRRRAEQAAAESMLERI 222 >gi|332525373|ref|ZP_08401536.1| ribonuclease III [Rubrivivax benzoatilyticus JA2] gi|332108645|gb|EGJ09869.1| ribonuclease III [Rubrivivax benzoatilyticus JA2] Length = 241 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 122/227 (53%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M A R+ L++R+G+ F +L+ +ALTH S + ERLEFLGD +L +S LL+ Sbjct: 1 MDA-RHDALQQRLGHRFTRTALMTRALTHRSWGAEH---NERLEFLGDSVLNCAVSALLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + EG+L+ LV ++ +VA L L+ +R+S + + SI AD VE Sbjct: 57 ERFSGSDEGDLTRVRAHLVREDSLHRVALTLGLSEVLRMSEGEMRGGGAQRPSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A++LDGG + A V + + + ++ + +DAKTELQEW A+ P Y++ Sbjct: 117 ALIGAIFLDGGFDPALATVRRLFGEVIAATEADAWSKDAKTELQEWLQARRLPVPAYRIV 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREG 224 G H F V ++ L A+ G S+R AEQ AA +L+ Sbjct: 177 ATRGEKHAQTFEVECAVATLGLAERGEGRSRRTAEQEAARRLLEGLK 223 >gi|139436972|ref|ZP_01771132.1| Hypothetical protein COLAER_00105 [Collinsella aerofaciens ATCC 25986] gi|133776619|gb|EBA40439.1| Hypothetical protein COLAER_00105 [Collinsella aerofaciens ATCC 25986] Length = 241 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 76/210 (36%), Positives = 107/210 (50%), Gaps = 3/210 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLF 60 + R + ++ +G+ F N+ LL ALTH S SYERLEFLGD ILG +++ LF Sbjct: 4 SDRLTRAQEILGHEFNNKVLLRAALTHPSAVEGQPVSASYERLEFLGDSILGAVVARSLF 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG+L+ SLVS T S+V+ EL + I + + S +V E Sbjct: 64 ESYPEFDEGKLTRLKVSLVSGATLSEVSHELGIDDIIIFGASETGTGARGLHSALENVYE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 SL+ ALYLD G +VA F+ + K A + + + K+ LQE A P YK+ Sbjct: 124 SLVGALYLDAGWDVAAEFIHRTLKPHLASERAEHPANPKSFLQECVQADGHEPPAYKLVG 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H P FT VV I G+ +G SK+ Sbjct: 184 SEGPAHAPTFTAVVLIDGIRQGRGTGSSKK 213 >gi|331005223|ref|ZP_08328616.1| Ribonuclease III [gamma proteobacterium IMCC1989] gi|330420966|gb|EGG95239.1| Ribonuclease III [gamma proteobacterium IMCC1989] Length = 217 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 84/215 (39%), Positives = 113/215 (52%), Gaps = 6/215 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L+KRI Y F++ SLLE ALTH S S + + ERLEFLGD +LG+ IS LF F Sbjct: 6 DLKQLQKRIDYQFSDESLLETALTHRSFSST---NNERLEFLGDSLLGVTISQQLFEQFP 62 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 KEG LS + + LV T + +ARE L+ ++ + S K SI AD VE++I Sbjct: 63 DVKEGILSRQRSRLVKGVTLAALAREFSLSDYLIMGSGELKSGGFRRDSILADTVEAIIG 122 Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++LD I+ + +++ R S +D KT LQE +K P Y V G Sbjct: 123 AIFLDSDIQQCQKVILQWFHDRLQGLSSHDQLKDPKTRLQELLQSKKKPLPTYTVANIEG 182 Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAA 216 H+ RFTV I+ L A S+R AEQ AA Sbjct: 183 ASHEQRFTVDCGIALLDTAVTATAGSRRQAEQQAA 217 >gi|329767729|ref|ZP_08259245.1| ribonuclease III [Gemella haemolysans M341] gi|328838830|gb|EGF88424.1| ribonuclease III [Gemella haemolysans M341] Length = 237 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 5/224 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61 +TL K+ G+ + A +HSS ++ + +YERLEFLGD ++ L S LF Sbjct: 10 LNTLNKKYGFNLKFSENFKNAFSHSSYTNEKRIAKHLNYERLEFLGDAVVELTTSEFLFK 69 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EGEL+ S+V +T + A +L L I + K ++ AD+ ES Sbjct: 70 KFYELPEGELTKLRASIVCEKTLVKYALQLGLDKCIYLGKGEEKMGGRSRAALLADIFES 129 Query: 122 LIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 A+YL+ +EV TF+ + + D KT LQE+ EY V Sbjct: 130 FTGAMYLESNLEVVKTFLHNTLFTEVQDLEYHSFVDYKTILQEYISKIKLGEIEYVVLDS 189 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +GP H FT + I G G +K+ +EQ++A + L++ G Sbjct: 190 TGPSHSKTFTSAILIGGKQYGSGTATTKKESEQLSAKQALEKLG 233 >gi|325981700|ref|YP_004294102.1| ribonuclease III [Nitrosomonas sp. AL212] gi|325531219|gb|ADZ25940.1| ribonuclease III [Nitrosomonas sp. AL212] Length = 237 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 102/221 (46%), Gaps = 6/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +R+GY F LL+ ALTH S S ERLEFLGD IL +IS +++ HF Sbjct: 14 LDIFCERLGYCFTQSHLLQTALTHRSHS---LPHNERLEFLGDAILNCVISGIIYKHFPE 70 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG LS + V+ + S +A L + +R+ K SI AD E+L+ A Sbjct: 71 LPEGHLSRLRANFVNQKALSSIALNLQMDKLLRLGEGELKSGGCHRPSILADTFEALLGA 130 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD T V + +D KT LQE+ ++ PEY V SG Sbjct: 131 IYLDSDYAQVETVVMAIYLPLIQNIDLESPAKDPKTLLQEFLQSQKLSLPEYLVVTTSGK 190 Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 H +F V IS L G ++R+AEQVAA ++ Sbjct: 191 AHKQKFKVECVISTLNIRTAGEGTNRRSAEQVAAKLAYEKI 231 >gi|238021755|ref|ZP_04602181.1| hypothetical protein GCWU000324_01658 [Kingella oralis ATCC 51147] gi|237866369|gb|EEP67411.1| hypothetical protein GCWU000324_01658 [Kingella oralis ATCC 51147] Length = 239 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L+K++GY F N +LL++ALTH S + ++ ERLEF+GD IL I+ +L++ F Sbjct: 11 LAHLQKQLGYTFKNPALLQQALTHRSY---HAQNNERLEFIGDSILDYAIAKMLYHAFPK 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG LS LV T +++AREL + + + + + K + SI AD VE+L+AA Sbjct: 68 LPEGRLSPLRAQLVKEATLAEIARELHIGNALYLGTGELKSGGNDRPSILADAVEALLAA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + D A V + + R + + +D KT+LQE A+ P+Y++ ++G Sbjct: 128 ISFDADFATAEATVQRLFAPRIQQLNTHTQAKDPKTQLQEMLQAQHLPLPKYRIEKQTGE 187 Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220 + F V ++ L S+RAAEQ A + + Sbjct: 188 GNTALFDVSCDLGQLGKITYAQAHSRRAAEQDCAQQAI 225 >gi|217970713|ref|YP_002355947.1| ribonuclease III [Thauera sp. MZ1T] gi|217508040|gb|ACK55051.1| ribonuclease III [Thauera sp. MZ1T] Length = 222 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 82/217 (37%), Positives = 112/217 (51%), Gaps = 6/217 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L+ R+G+AF++ LL++ALTH S + ER EFLGD +L ++S LF F Sbjct: 3 DRLQARLGHAFSDVRLLQEALTHRSFGQ---PNNERFEFLGDAVLDCVVSIALFGRFGEL 59 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EGELS SLV +T ++A EL+L +R+ K S SI AD +E+L AA+ Sbjct: 60 REGELSRVRASLVRQDTLHRLALELELGDCLRLGEGELKSGGSRRPSILADALEALFAAV 119 Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G E A +D+ + + K +D KT LQEW A+ P Y + G Sbjct: 120 YLDAGFEAAKGVIDRLYAPLIAEVDPCKPSKDPKTALQEWLQARRIPVPSYTMVEIVGEA 179 Query: 185 HDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220 H F V EI LA G S+R AEQ +A L Sbjct: 180 HAQEFEVACEIPKLAVRTLGRGPSRRIAEQQSAELAL 216 >gi|332638233|ref|ZP_08417096.1| ribonuclease III [Weissella cibaria KACC 11862] Length = 232 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 10/228 (4%) Query: 6 YSTLEKRI----GYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIST 57 + L+ + F + SLLE+ALT ++ + + Y+RLEFLGD ++ + Sbjct: 2 FKQLQAELALSYNIHFNDVSLLEEALTQANYINEHPNYTGNDYQRLEFLGDAVMQQSTAV 61 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + EG L+ S+V + ++REL L ++++ S+ D Sbjct: 62 YLFKRYPEWDEGRLTELRISMVQTRAFAALSRELHLDQYVQLGRGEELSGARNRDSLLED 121 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 + E+ I AL+LD G +V F+ + + R + + G Sbjct: 122 LWEAFIGALFLDQGQDVVMHFLGDIMFNKIDEGFYDRFVDYKSKLQEHLQRHGSVKITYT 181 Query: 178 TFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P +++ FTV V ++ A G S + AE+VAA + Sbjct: 182 KLGERPVENNEQIFTVQVAVNDQVLATGEGKSTKEAEKVAARAAYQTL 229 >gi|86135727|ref|ZP_01054306.1| ribonuclease III [Roseobacter sp. MED193] gi|85826601|gb|EAQ46797.1| ribonuclease III [Roseobacter sp. MED193] Length = 222 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 78/201 (38%), Positives = 114/201 (56%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E+RIG+ F LL +ALTH S+S ++ +RLEFLGDR+LGL+++T L +H A E Sbjct: 4 FEQRIGHQFVRPELLVRALTHPSVSSPNRKDNQRLEFLGDRVLGLVMATALLDHDKDASE 63 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ RFN+LV E C+ VARE++L +++ ++ D +E++IAA+Y Sbjct: 64 GQLAPRFNALVRKEACADVAREIELGEVLKLGRSEMMSGGRRKLALLGDGMEAVIAAVYK 123 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 D G EVA + + W R + RD KT LQE+ A+ P Y R+GPDH P Sbjct: 124 DAGFEVAQAMILRLWGARIHQVEADARDPKTALQEYVQARRQNPPAYVQVARTGPDHQPI 183 Query: 189 FTVVVEISGLAPAQGMDCSKR 209 FT+ V + + SKR Sbjct: 184 FTIAVRLEDGTEERATAGSKR 204 >gi|85708367|ref|ZP_01039433.1| ribonuclease III [Erythrobacter sp. NAP1] gi|85689901|gb|EAQ29904.1| ribonuclease III [Erythrobacter sp. NAP1] Length = 232 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 86/218 (39%), Positives = 128/218 (58%), Gaps = 6/218 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSY------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 IG+ + S+ +ALTH S + ++ + Y+RLEFLGDR+LGL +++ LF D + Sbjct: 15 IGFEVKDGSMWLEALTHGSFNSTHTATGQPEADYQRLEFLGDRVLGLSVASWLFRSSDRS 74 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 KEG+LS R N+LVS TC+++AR + L+ IR+ R+D S +I DV+E++I A Sbjct: 75 KEGQLSQRLNALVSGATCARIARTIGLSDHIRLGKQAREDGGSDSDNILGDVMEAIIGAS 134 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 +LD G + + + W+ + K+ LQEWA P+Y V RSGPDH Sbjct: 135 FLDNGFDTTRAIILELWEPELAGDAGKAKHPKSALQEWAAGNRRAMPQYDVIDRSGPDHA 194 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 RFTV V I + A+G+ SK AE++AAAE L++ G Sbjct: 195 ARFTVRVSIHKVGEAEGVATSKHEAEKLAAAEFLEKYG 232 >gi|300814491|ref|ZP_07094752.1| ribonuclease III [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511409|gb|EFK38648.1| ribonuclease III [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 230 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 121/227 (53%), Gaps = 5/227 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57 ++ TLEK + Y F N +LL+KALTHSS + +S ERLEFLGD +LGL++ Sbjct: 1 MSVDKETLEKNLNYFFKNHALLDKALTHSSYVNENNLKSFDSNERLEFLGDAVLGLVMGE 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 + ++ EGELS ++ V+ + VA + L I K+ F SI AD Sbjct: 61 YYYKKYELYNEGELSKLRSASVNEHALAVVANHIKLGELIHFGKGEIKNGGKFRESILAD 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+LI A++LD ++A + ++ + + RD K++LQE+ T +Y + Sbjct: 121 AFEALIGAIFLDSSFKIARKVILALFEDIFDEIMLYDRDYKSKLQEFVQKDSC-TIKYVL 179 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T GPD+D F+ V ISG +GM +K+ +EQ+AA E LK G Sbjct: 180 TDEIGPDNDKTFSSSVLISGKIYGKGMGKTKKKSEQMAAYEALKVLG 226 >gi|299135102|ref|ZP_07028293.1| ribonuclease III [Afipia sp. 1NLS2] gi|298590079|gb|EFI50283.1| ribonuclease III [Afipia sp. 1NLS2] Length = 282 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 88/202 (43%), Positives = 120/202 (59%), Gaps = 3/202 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E+RIG+ F N +LL+ ALTH S S S +SY+RLEFLGD +LGL++S +L+ F Sbjct: 56 EIEQRIGHTFKNPALLKTALTHVSALKSSQSRTDSYQRLEFLGDHVLGLIVSDMLYGAFP 115 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EGE+S R LV E C VA+ L L I++ + SI D+ E++I Sbjct: 116 KADEGEMSKRLADLVRKEACVDVAKSLGLHENIKLGTVGAGVGARLRNSIVGDICEAVIG 175 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A++LDGG A FV + W +R + + RD KT LQEWA K TP Y+ R+GP Sbjct: 176 AIFLDGGYGAAEQFVLRNWTERMRRPVRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPH 235 Query: 185 HDPRFTVVVEISGLAPAQGMDC 206 HDPRF V V++ GLA A+G+ Sbjct: 236 HDPRFRVAVDLPGLASAEGIGS 257 >gi|323700157|ref|ZP_08112069.1| ribonuclease III [Desulfovibrio sp. ND132] gi|323460089|gb|EGB15954.1| ribonuclease III [Desulfovibrio desulfuricans ND132] Length = 227 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 113/222 (50%), Gaps = 4/222 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + + L+ I + F LE ALTHSS ++ E ERLEFLGD +L L IS F Sbjct: 1 MDTAALQDCIHHRFGQVKFLETALTHSSFANEQDGFEDNERLEFLGDAVLELCISEEGFK 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + +A EG+L+ + LV ++ + +AREL+L FIR+ ++ AD E+ Sbjct: 61 RYPTAHEGQLTRIRSQLVKEQSLAGIARELELDRFIRLGRGEELQGGRERDALLADAFEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A++LDGG E A + ++ + +D K+ LQE A F P Y ++ Sbjct: 121 LLGAVFLDGGFEAARRTILDIFEDQWPARAMLPETKDYKSRLQEVAQDVFRDRPVYVLSG 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 SGP+H+ F V V + +G+ S + AEQ AA L+ Sbjct: 181 TSGPEHEKLFEVDVTLPNGERFRGLGTSVKRAEQEAARMGLE 222 >gi|282600119|ref|ZP_05973085.2| ribonuclease III [Providencia rustigianii DSM 4541] gi|282566488|gb|EFB72023.1| ribonuclease III [Providencia rustigianii DSM 4541] Length = 263 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 108/213 (50%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 38 MNPLLLEKLQRKLGYTFTQHDLLIQALTHRSAS---SKHNERLEFLGDSILSFVIANDLY 94 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 95 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 154 Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + + G ++D KT LQE+ + P Y V Sbjct: 155 ALIGGIFLDSDIQTIERIILAWYKGRLDEISPGDKQKDPKTRLQEYLQGRHLPLPNYLVV 214 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRA 210 G HD FT+ E+SG+ + G+ S+R Sbjct: 215 QVKGEAHDQEFTIHCEVSGIEQSINGVGSSRRK 247 >gi|282882375|ref|ZP_06291003.1| ribonuclease III [Peptoniphilus lacrimalis 315-B] gi|281297796|gb|EFA90264.1| ribonuclease III [Peptoniphilus lacrimalis 315-B] Length = 230 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 121/227 (53%), Gaps = 5/227 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57 ++ TLEK + Y F N +LL+KALTHSS + +S ERLEFLGD +LGL++ Sbjct: 1 MSVDKETLEKNLNYFFKNHALLDKALTHSSYVNENNLKSFDSNERLEFLGDAVLGLVMGE 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 + ++ EGELS ++ V+ + VA + L I K+ F SI AD Sbjct: 61 YYYKKYELYNEGELSKLRSASVNEHALAVVANHIKLGELIHFGKGEIKNGGKFRESILAD 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+LI A++LD ++A + ++ + + RD K++LQE+ T +Y + Sbjct: 121 AFEALIGAVFLDSSFKIARKVILALFEDIFDEIMLYDRDYKSKLQEFVQKDSC-TIKYVL 179 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T GPD+D F+ V ISG +GM +K+ +EQ+AA E LK G Sbjct: 180 TDEIGPDNDKTFSSSVLISGKIYGKGMGKTKKKSEQMAAYEALKVLG 226 >gi|162447098|ref|YP_001620230.1| dsRNA-specific ribonuclease III [Acholeplasma laidlawii PG-8A] gi|161985205|gb|ABX80854.1| dsRNA-specific ribonuclease III [Acholeplasma laidlawii PG-8A] Length = 219 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 61/218 (27%), Positives = 93/218 (42%), Gaps = 9/218 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDS 65 + L K++ + L +ALTH+S +H Q + ERLEFLGD ++ L++ST LF D Sbjct: 2 NDLLKQLNIETKHIDLYLQALTHTSYAHENQTDHNERLEFLGDAVIELMMSTYLF-THDQ 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + +G L+ R V E A+++DL S +R+ + + S+ AD E+ A Sbjct: 61 SNQGVLTKRRAQAVREEALVLYAQKMDLESKMRLGNGEQIAK----PSMIADAFEAFFGA 116 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LY+D G + +K + + YK GP H Sbjct: 117 LYMDQGFDKTYEIFNKVVIPHLNLVEHI--KDYKTQLQEFIQLERKSLSYKTVKVGGPSH 174 Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222 P F V + G S + AEQ AA E L + Sbjct: 175 RPIFKSEVFLENSIMLGTGQGSSTKEAEQNAAKEALSK 212 >gi|307292852|ref|ZP_07572698.1| ribonuclease III [Sphingobium chlorophenolicum L-1] gi|306880918|gb|EFN12134.1| ribonuclease III [Sphingobium chlorophenolicum L-1] Length = 227 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 89/215 (41%), Positives = 122/215 (56%), Gaps = 3/215 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L IG + + +ALTH S +YERLEFLGDRILGLLI+ +++ F + E Sbjct: 14 LTALIGRKPKDPAAFTQALTHGSA---NAVNYERLEFLGDRILGLLIAEWVYDRFSTEPE 70 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS RFN+LVS ETC++VAR + + + + R D + ++ DV+E+LI ALYL Sbjct: 71 GKLSRRFNALVSGETCAEVARSAGVPTHLILGKQARDDGAADSDNVLGDVMEALIGALYL 130 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +GG++ A T V + W R + K+ LQEWA A PEY +T RSGP H + Sbjct: 131 EGGLKEARTLVRRLWADRVDTQASAPKHPKSALQEWAAANKRKPPEYAMTDRSGPHHALK 190 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 FTV V I G A SK+ AE AA +L + Sbjct: 191 FTVTVSIKGAGEASATGGSKQEAETAAAKALLDKL 225 >gi|294815350|ref|ZP_06773993.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064] gi|326443704|ref|ZP_08218438.1| ribonuclease III [Streptomyces clavuligerus ATCC 27064] gi|294327949|gb|EFG09592.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064] Length = 303 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 67/218 (30%), Positives = 107/218 (49%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 26 LEGRLGYRLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 84 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R L+L +FIR+ SI AD +E++I A+ Sbjct: 85 PEGQLAKLRAAVVNSRALAEVGRGLELGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 144 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + KS + A G+ + +GPDH Sbjct: 145 YLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTASEGLGVPEYLVTETGPDH 204 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G++ G SK+ AEQ AA + Sbjct: 205 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWREI 242 >gi|254392460|ref|ZP_05007640.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064] gi|197706127|gb|EDY51939.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064] Length = 300 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 67/218 (30%), Positives = 107/218 (49%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 23 LEGRLGYRLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 81 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R L+L +FIR+ SI AD +E++I A+ Sbjct: 82 PEGQLAKLRAAVVNSRALAEVGRGLELGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 141 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + KS + A G+ + +GPDH Sbjct: 142 YLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTASEGLGVPEYLVTETGPDH 201 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G++ G SK+ AEQ AA + Sbjct: 202 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWREI 239 >gi|188593372|emb|CAP07635.1| drosha protein [Oikopleura dioica] Length = 1096 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 7/225 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 R + LE+ +G F N LL KALT + + + +RLEFLGD I L + LF H Sbjct: 768 RCAELEELLGVKFKNIRLLAKALTLKNVKYNDITKGHNQRLEFLGDAICNFLAAEYLFKH 827 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ ++V A T + VA+++ L F+ L D + I AD++ES Sbjct: 828 FPLHHEGHLTLLRCTMVGAPTQALVAQQIGLDKFVISRQSLSHDKMGWKQKILADLMESF 887 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I AL++D GI F+ + R + D K+ LQ+ + Sbjct: 888 IGALFIDRGIIAVDVFMKVAFYPRLKHFIMSQVWNDPKSCLQQCCLTLRPEEGTPDLPEY 947 Query: 181 ---SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + R+ V V G +G S + AE+ AA + L++ Sbjct: 948 RTTTSNSSKMRYRVEVFFRGERIGEGHGPSIQLAEKFAARKALEK 992 Score = 58.8 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 55/217 (25%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES-------------------------- 39 +L+ +GY F N S + +A+TH S ++Y E+ Sbjct: 538 LESLQTILGYQFKNLSWITRAMTHPSAVYNYGENPDHVRNSTTNCGIRKPIYGEEGPSRP 597 Query: 40 YE-----------------------------RLEFLGDRILGLLISTLLFNHFDSAKEGE 70 YE R EFLGD +LG ++S +F+ F + EG Sbjct: 598 YERKRGIVTLIKVMALLGTSEPKESPINYLERPEFLGDAVLGFVVSVSIFHLFPNLGEGA 657 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 LS+ +LV + +A++L L + + + A+ E+++ A+Y+DG Sbjct: 658 LSMLRCALVCNVHLAALAQKLTLEDYFVYIHSQDLAKREDLNNALANCFEAVLGAIYMDG 717 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 G+E + + + LQ+ Sbjct: 718 GLEPVRQLLARVLFDDKALQRVWLDFPAHPLQQEYPD 754 >gi|329770217|ref|ZP_08261607.1| ribonuclease III [Gemella sanguinis M325] gi|328837023|gb|EGF86667.1| ribonuclease III [Gemella sanguinis M325] Length = 237 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 104/232 (44%), Gaps = 9/232 (3%) Query: 1 MSALRYSTLEKRIG--YAF--ANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILG 52 M L ++ Y F + A +HSS ++ + +YERLEFLGD ++ Sbjct: 1 MEKRYIEDLLNKLNKDYNFNLKYSNNFRMAFSHSSYTNEKRIAKHLNYERLEFLGDAVVE 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L S LF F + EGEL+ S+V +T + A +L+L I + K Sbjct: 61 LTTSEFLFKKFPNLAEGELTKLRASIVCEKTLVKYALQLNLDKCIFLGKGEEKMGGRSRA 120 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGV 171 ++ AD+ ES A+YL+ G+E TF+ + + D KT LQE+ Sbjct: 121 ALLADIFESFTGAMYLEAGLETVKTFLSNTLFTEVDSFEYLSFVDYKTILQEYVSKIKLG 180 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 EY V SGP H FT V I G G +K+ +EQ++A L++ Sbjct: 181 VIEYTVLDSSGPSHLKTFTSAVIIDGKQYGSGTAKTKKESEQLSAKAALEKL 232 >gi|330811510|ref|YP_004355972.1| ribonuclease III [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379618|gb|AEA70968.1| Ribonuclease III [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 229 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 76/217 (35%), Positives = 110/217 (50%), Gaps = 10/217 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSVSLSRLERQLGYTFKDQDLMLLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+ Sbjct: 58 RFPLAREGQLSRLRARLVKGETLAVLARGFDLGDYLRLGSGELKSGGFRRESILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD G+E+A V + +D KT LQE+ ++ P Y+V Sbjct: 118 LIGAIYLDAGMEMARERVLAWLTSEIDSLTLVDTNKDPKTRLQEFLQSRSCELPRYEVVD 177 Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213 G H F V E+ + ++G S+R AEQ Sbjct: 178 IQGEPHCRTFFVECEVVLLNEK--SRGQGVSRRIAEQ 212 >gi|224476345|ref|YP_002633951.1| ribonuclease III [Staphylococcus carnosus subsp. carnosus TM300] gi|254807899|sp|B9DPJ2|RNC_STACT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|222420952|emb|CAL27766.1| putative ribonuclease III [Staphylococcus carnosus subsp. carnosus TM300] Length = 242 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 16/235 (6%) Query: 1 MSALRYSTLEKRIGYAFANRS-----------LLEKALTHSSISHSYQ----ESYERLEF 45 M+ + L + FA++ L ++A +HSS + + ERLEF Sbjct: 1 MTNHKKEALLQNFNKKFADKMHMLKLNYDHLPLYQQAFSHSSFINDFNMDRLAHNERLEF 60 Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 LGD +L L +S LF+ + EG L+ ++V + A ++ L I + K Sbjct: 61 LGDAVLELTVSRYLFDKYPELPEGNLTKMRATIVCEPSLVIFANKIQLNELILLGKGEEK 120 Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEW 164 S+ +D E+ + ALYLD G++ F ++ D KT+ QE Sbjct: 121 TGGRTRPSLVSDAFEAFVGALYLDQGLDAVWQFSEEVIFPHVEDDELMGVVDFKTQFQEL 180 Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 H Y++ GP H FT V + G A+G +K+ +EQ AA + Sbjct: 181 IHRLSKGNVTYRLIDEQGPAHHRLFTSEVLLEGEPVAKGQGRTKKESEQKAAEKA 235 >gi|183599777|ref|ZP_02961270.1| hypothetical protein PROSTU_03285 [Providencia stuartii ATCC 25827] gi|188022041|gb|EDU60081.1| hypothetical protein PROSTU_03285 [Providencia stuartii ATCC 25827] Length = 226 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 69/213 (32%), Positives = 105/213 (49%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L++++GY F LL +ALTH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPSLLEQLQRKLGYKFNQHDLLIQALTHRSA---NSKHNERLEFLGDSILSFVIANDLY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIEKIILDWYQTRLNEISPGDKQKDPKTRLQEYLQGRHLPLPNYIVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G HD FT+ ++SG+ P G+ S+R Sbjct: 178 QVKGEAHDQEFTIHCQVSGIEQPINGVGSSRRK 210 >gi|325127806|gb|EGC50714.1| ribonuclease III [Neisseria meningitidis N1568] Length = 239 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 111/218 (50%), Gaps = 6/218 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++KR+GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 12 AAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 69 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + R +D KT LQE A+ P+Y++ + G Sbjct: 129 SFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 188 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 +D F V ++ L + S++AAEQ AA E L+ Sbjct: 189 NDSMFVVSCDLGELGFVCRAKGTSRKAAEQSAAKEALQ 226 >gi|307132118|ref|YP_003884134.1| RNase III [Dickeya dadantii 3937] gi|306529647|gb|ADM99577.1| RNase III [Dickeya dadantii 3937] Length = 226 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+K++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQKKLGYTFQQYDLLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSNIQTVERLILQWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRK 210 >gi|313665378|ref|YP_004047249.1| ribonuclease III [Mycoplasma leachii PG50] gi|312949374|gb|ADR23970.1| ribonuclease III [Mycoplasma leachii PG50] Length = 232 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 6/227 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + ++ ++ + ++ALTH+S ++ + SY+RLEFLGD IL + S LF Sbjct: 1 MNIKNFFEKYNIKINDQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYTSKFLFF 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ EGEL+ S+V E+ S++AR+++L IR+ SI AD+ E+ Sbjct: 61 NYSKLGEGELTRLRASIVREESLSRIARDINLGQLIRLGHSELMTKGYEKQSILADIFEA 120 Query: 122 LIAALYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 L AA+YLD E + KY K + ++ + + + + + Sbjct: 121 LTAAIYLDQSEEGLLIWLEQTLFKYMKDPTFINVTKDFKSELQELLQSEKRSDLKYITEN 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 ++ +TV + + G G SK+ AEQ AA++ L + Sbjct: 181 EEFFANENKTLYTVSINLDGQKFGVGKGYSKQEAEQNAASDCLSKLK 227 >gi|254383289|ref|ZP_04998642.1| ribonuclease 3 [Streptomyces sp. Mg1] gi|194342187|gb|EDX23153.1| ribonuclease 3 [Streptomyces sp. Mg1] Length = 277 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 68/216 (31%), Positives = 107/216 (49%), Gaps = 4/216 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 23 LEGRLGYRLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYTTHPDL 81 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R L+L SFIR+ SI AD +E++I A+ Sbjct: 82 PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 141 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + KS + A G+ + +GPDH Sbjct: 142 YLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLVTETGPDH 201 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + FT + G++ G SK+ AEQ AA + Sbjct: 202 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 237 >gi|195151442|ref|XP_002016656.1| GL11697 [Drosophila persimilis] gi|194110503|gb|EDW32546.1| GL11697 [Drosophila persimilis] Length = 1262 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 81/224 (36%), Gaps = 6/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E IG F + LL +A T S +H S +RLEFLGD +L L+ S L+ H Sbjct: 939 DLTKFEDSIGLKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLISSEYLYRH 998 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L + + ++ + + SL Sbjct: 999 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTKYAVYANPKADLKTKDRADLLEAFLGSL 1058 Query: 123 IA----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + + + K + P YKV Sbjct: 1059 YVDKGLLFCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVV 1118 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP + + V V A S + AE AA + L+ Sbjct: 1119 EASGPTNTRVYKVAVYFRSKRLATSSGASIQQAEMNAAKQALEN 1162 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 20/34 (58%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE+ IGY F NR LL+ ALTH S +Y + Sbjct: 708 LDLLEESIGYQFKNRYLLQLALTHPSYKENYGTN 741 Score = 43.4 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 49/98 (50%) Query: 36 YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A++L L Sbjct: 793 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 852 Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 F+ + + A+ E+L+ AL LDGGI+ Sbjct: 853 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 890 >gi|121605952|ref|YP_983281.1| ribonuclease III [Polaromonas naphthalenivorans CJ2] gi|120594921|gb|ABM38360.1| RNAse III [Polaromonas naphthalenivorans CJ2] Length = 233 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 112/225 (49%), Gaps = 8/225 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L+KR+ + FA LL +ALTH S S + ER+EFLGD +L L ++ LL+ Sbjct: 11 LQALQKRLQHEFAKPKLLVQALTHRSFS---SDHNERIEFLGDSVLNLAVAGLLYEQLSE 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS +LV +T Q+A L L +R+ + S+ AD +E++I A Sbjct: 68 LPEGDLSRVRANLVKQDTLHQLAVVLGLPDLLRLGEGEARSGGKNRPSMLADALEAVIGA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G + A V + +K + +D KTELQEW + P YKV G Sbjct: 128 VYLDAGYDQADQLVRRLFKDVQVNPQMKAIGKDPKTELQEWLQGRKMRLPLYKVVSTMGA 187 Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGIWT 227 H F V EI+ A+ G+ S+RA EQ AA +L + T Sbjct: 188 AHQQTFEVECEIAEFGRAERGIGVSRRAGEQAAATAML--LFVKT 230 >gi|327479794|gb|AEA83104.1| ribonuclease III [Pseudomonas stutzeri DSM 4166] Length = 229 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 75/217 (34%), Positives = 108/217 (49%), Gaps = 10/217 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + + LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LFN Sbjct: 1 MSTSLARLERKLGYQFKDQELMLLALTHRSYA---GRNNERLEFLGDAILNFVAGEALFN 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF A+EG+LS LV ET + +AR +L +R+ S K SI AD +E+ Sbjct: 58 HFPQAREGQLSRLRARLVKGETLAVLARGFELGDHLRLGSGELKSGGYRRESILADTLEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD G++VA V + +D KT LQE+ ++ P Y+V Sbjct: 118 LIGAIYLDAGMDVARERVIAWLANELQGLTLVDTNKDPKTRLQEFLQSRACELPRYEVVD 177 Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213 G H F V ++ + G S+R AEQ Sbjct: 178 IQGEPHCRTFFVECQVALLNDK--THGQGASRRIAEQ 212 >gi|269140067|ref|YP_003296768.1| ribonuclease III [Edwardsiella tarda EIB202] gi|267985728|gb|ACY85557.1| ribonuclease III [Edwardsiella tarda EIB202] gi|304559895|gb|ADM42559.1| Ribonuclease III [Edwardsiella tarda FL6-60] Length = 226 Score = 123 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFRQQDLLMQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIERLILDWYHSRLEEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G HD FT+ ++SGL+ P G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSAPVVGVGSSRRK 210 >gi|271501621|ref|YP_003334647.1| ribonuclease III [Dickeya dadantii Ech586] gi|270345176|gb|ACZ77941.1| ribonuclease III [Dickeya dadantii Ech586] Length = 226 Score = 123 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+K++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQKKLGYTFQQYDLLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSNIQTIERLILSWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRK 210 >gi|251788698|ref|YP_003003419.1| ribonuclease III [Dickeya zeae Ech1591] gi|247537319|gb|ACT05940.1| ribonuclease III [Dickeya zeae Ech1591] Length = 226 Score = 123 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+K++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQKKLGYTFQQYDLLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSNIQTVERLILSWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRK 210 >gi|330877435|gb|EGH11584.1| ribonuclease III [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 229 Score = 123 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 77/215 (35%), Positives = 109/215 (50%), Gaps = 6/215 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ S LE+++ Y F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSVSLSRLERQLDYTFKDQELMILALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+ Sbjct: 58 RFPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD G+E A V + +D KT LQE+ ++ P Y+V Sbjct: 118 LIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVD 177 Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V EI+ L ++G S+R AEQ Sbjct: 178 IQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212 >gi|297568930|ref|YP_003690274.1| ribonuclease III [Desulfurivibrio alkaliphilus AHT2] gi|296924845|gb|ADH85655.1| ribonuclease III [Desulfurivibrio alkaliphilus AHT2] Length = 232 Score = 123 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 96/204 (47%), Gaps = 5/204 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +R+GY F + LL +ALTH S + + ERLEFLGD +L L + LL+ Sbjct: 12 QRLGYCFHDPQLLRQALTHRSFTAEGGGRGRPHNERLEFLGDAVLDLAVGELLYRRHPKM 71 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EGELS R +LV+ +++AR L + + + SI AD E+L+ A+ Sbjct: 72 REGELSRRRAALVNEAHLARMARRTGLDELLLLGRGEAQSGGRDKPSILADAFEALLGAV 131 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE-LQEWAHAKFGVTPEYKVTFRSGPDH 185 YLDGG + + F + LQE + G P Y++ GP H Sbjct: 132 YLDGGCRAVLDLAAELFAPWVTDQDDFEENDAKTALQEVLQERHGQAPGYRLVAEEGPAH 191 Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209 D RFTV VE G QG SK+ Sbjct: 192 DKRFTVEVEFRGRVMGQGKARSKK 215 >gi|312384091|gb|EFR28902.1| hypothetical protein AND_02573 [Anopheles darlingi] Length = 1155 Score = 123 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 81/223 (36%), Gaps = 6/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + E IG F + LL +A T S + + +RLEFLGD +L L+ + ++ HF Sbjct: 676 LTRFEDSIGVKFNHIRLLARAFTDRSRGYTALTLGTNQRLEFLGDAVLKLIGTEHVYRHF 735 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 L+ N LVS T + V +L +A + +S+ + + + +L Sbjct: 736 PKHHSQHLADWRNQLVSNRTLATVCDDLGMAHYAIISNPKTELKMKDRADLLEAFIGALY 795 Query: 124 A----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + + + K + + P YK+ Sbjct: 796 VDKGLLHCEKLCEVCLFPRLQELIENQERNDPKTKLQQHCHATHPMYGSTPDHPLYKLIG 855 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G + TV V G A S R AE+ AA L++ Sbjct: 856 CIGSMKNRVCTVGVYFRGKQLAIANGHSIRQAEENAARLALEQ 898 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 43/140 (30%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS------------------------------ 35 LEK+I Y F NR L+ ALTH + +++ Sbjct: 460 LDVLEKQIDYRFTNRYTLQLALTHRTYANNGGTNPDHVRNVLANCGILNMNPRKRNVHSM 519 Query: 36 -------------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + ERL FLGD ++ S LF+ F + EG LSV ++V + Sbjct: 520 IRPHSGKKSETAFNRRHNERLAFLGDAVIVFSASVPLFHMFPNLGEGGLSVYRGAIVEKQ 579 Query: 83 TCSQVARELDLASFIRVSSD 102 +A++L L F+R + Sbjct: 580 HLVVLAKKLHLEEFLRCAHG 599 >gi|330466266|ref|YP_004404009.1| ribonuclease iii [Verrucosispora maris AB-18-032] gi|328809237|gb|AEB43409.1| ribonuclease iii [Verrucosispora maris AB-18-032] Length = 287 Score = 123 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 7/222 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE G + + LLE+ALTH S ++ + ERLEFLGD +LG++I+T LF++ Sbjct: 14 LEAAFGVSM-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDL 72 Query: 67 KEGELSVRFNSLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ S+V+ + VAR L ++ + SI AD +E+L+ Sbjct: 73 PEGQLAKLRASVVNMRALADVARGLGPDGLGPYLLLGKGEETTGGRDKASILADTLEALL 132 Query: 124 AALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL G++ A + + + A +G+ + A G+ +G Sbjct: 133 GAIYLQYGLDTAAEVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPEYRIEGAG 192 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PDH FT V ++G SK+ AEQ AA + Sbjct: 193 PDHLKTFTAWVVVAGNRYGGADGRSKKEAEQRAAESAWRTLN 234 >gi|160900693|ref|YP_001566275.1| ribonuclease III [Delftia acidovorans SPH-1] gi|238687167|sp|A9BNJ5|RNC_DELAS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|160366277|gb|ABX37890.1| Ribonuclease III [Delftia acidovorans SPH-1] Length = 227 Score = 123 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 113/222 (50%), Gaps = 6/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L+ R+ + FA +LL++A+TH S S ++ ERLEFLGD +L L IS+LL+ S Sbjct: 5 LNALQLRLQHQFAEPALLQRAVTHRSFS---ADNNERLEFLGDSVLNLAISSLLYQRLSS 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS +LV T Q+A L L +R+ K SI AD VE+LI A Sbjct: 62 MPEGDLSRVRANLVKEGTLHQIALRLQLPDLLRLGEGESKSGGKQRPSILADAVEALIGA 121 Query: 126 LYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G V ++ +DAKT LQEW + P+Y+V +G Sbjct: 122 VYLDAGYAAGEKVVHHLFEGVDINPHMRAAEKDAKTALQEWLQGRRMKLPQYEVVATTGA 181 Query: 184 DHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224 H F V I+ L A+G S+RAAEQ AA +L+ Sbjct: 182 AHRQTFEVACAIAELQLQARGTGASRRAAEQTAATAMLELLK 223 >gi|290476134|ref|YP_003469034.1| RNase III, ds RNA [Xenorhabdus bovienii SS-2004] gi|289175467|emb|CBJ82270.1| RNase III, ds RNA [Xenorhabdus bovienii SS-2004] Length = 226 Score = 123 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 70/213 (32%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+++ + L++++GY F LL +ALTH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNSIIINRLQRKLGYTFIQHDLLLQALTHRSA---NSKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD +E Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGHRRESILADSIE 117 Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A++LD I+ + + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGAIFLDSDIQTIERIILSWYETRLNEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRA 210 G HD FT+ +ISG P +G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQISGFEQPVRGVGSSRRK 210 >gi|319946572|ref|ZP_08020806.1| ribonuclease III [Streptococcus australis ATCC 700641] gi|319746620|gb|EFV98879.1| ribonuclease III [Streptococcus australis ATCC 700641] Length = 241 Score = 123 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 70/212 (33%), Positives = 102/212 (48%), Gaps = 6/212 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M AL Y+ L ++ F + LLE A TH+S ++ ++ ERLEFLGD IL L+IS Sbjct: 9 MQAL-YNLLAEKFRLTFDDTELLETAFTHTSYANEHRLLKISHNERLEFLGDAILQLVIS 67 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + S EG+LS + +V E+ + +R+ FI++ K +I Sbjct: 68 EYLFALYPSKPEGDLSKMRSMIVREESLAGFSRDCGFDQFIKLGKGEEKSGGRNRDTILG 127 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + AL LD G+E F+ + + + D KT LQE V Y Sbjct: 128 DLFEAFLGALLLDKGVETVRDFIQQVMIPKVEAGQFEQVIDYKTRLQEILQIHGDVLITY 187 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +VT SGP H F V V ++G QG S Sbjct: 188 EVTSESGPAHAKEFEVQVSVNGKIIGQGRGRS 219 >gi|270304349|gb|ACZ71259.1| RNAse type III [Escherichia coli BL21] Length = 226 Score = 123 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 66/213 (30%), Positives = 113/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH + ++ ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHR---RASRKHNERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ + K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGTGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++L+ I+ + +++ R + ++D KT + E+ + P Y V Sbjct: 118 ALIGGVFLESDIQTVEKLILNWYQTRVDEISPGDKQKDPKTRVHEYLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|254374854|ref|ZP_04990335.1| ribonuclease III [Francisella novicida GA99-3548] gi|151572573|gb|EDN38227.1| ribonuclease III [Francisella novicida GA99-3548] Length = 230 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 9/222 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS +GY F + +LL +ALTH S +++YERLEFLGD +L +I+ +L+ F Sbjct: 5 YSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFTD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T +Q+A L + +I + I DV E++I A Sbjct: 62 LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYII--LGASEQGGHKREKILEDVFEAVIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD + K+++ +D+K++LQE PEY + G Sbjct: 120 IYLDSDFATVKKVILKWYQPIILSINLDTIKVKDSKSKLQEILLQNALSLPEYSIEAIDG 179 Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 DH+ +FTVV L + S++ AEQ AA ++++ Sbjct: 180 KDHEQQFTVVAMSKDLNLRVKAQGTSRKKAEQKAAEKMIEML 221 >gi|312959172|ref|ZP_07773691.1| Ribonuclease 3 [Pseudomonas fluorescens WH6] gi|311286942|gb|EFQ65504.1| Ribonuclease 3 [Pseudomonas fluorescens WH6] Length = 229 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 76/217 (35%), Positives = 107/217 (49%), Gaps = 10/217 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MTVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS LV ET + +AR L ++R+ S K SI AD +E+ Sbjct: 58 RFPQAREGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD G+E A V + +D KT LQE+ ++ P Y+V Sbjct: 118 LIGAIYLDAGMEAAKARVTAWLTSEIESLTLVDTNKDPKTRLQEFLQSRGCELPRYEVVD 177 Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213 G H F V EI + ++G S+R AEQ Sbjct: 178 IQGEPHCRVFFVECEITLLNEK--SRGQGVSRRIAEQ 212 >gi|212710663|ref|ZP_03318791.1| hypothetical protein PROVALCAL_01729 [Providencia alcalifaciens DSM 30120] gi|212686744|gb|EEB46272.1| hypothetical protein PROVALCAL_01729 [Providencia alcalifaciens DSM 30120] Length = 226 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 70/213 (32%), Positives = 106/213 (49%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPSLLEKLQRKLGYTFKQNDLLIQALTHRSAS---SKHNERLEFLGDSILSFVIANDLY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIEKIILAWYKARLDEISPGDKQKDPKTRLQEYLQGRHLPLPNYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRA 210 G HD FT+ ++SG P G+ S+R Sbjct: 178 LVKGEAHDQEFTIHCQVSGIEEPIHGIGSSRRK 210 >gi|254442236|ref|ZP_05055712.1| ribonuclease III [Verrucomicrobiae bacterium DG1235] gi|198256544|gb|EDY80852.1| ribonuclease III [Verrucomicrobiae bacterium DG1235] Length = 263 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 6/225 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFN 61 + LE ++GY F + LL ++LTH S + ++ +RLEFLGD ++ L+++ L+ Sbjct: 35 KVKRLENKLGYTFKTKGLLHQSLTHPSFLLNTKDQLKNNQRLEFLGDSVIQLVLTEKLYE 94 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F S +EG+L+ + + + +AREL L ++ + R + S D E+ Sbjct: 95 KFPSLREGKLTSIRSGYARGDYMAGIARELKLGDYLILKPKDRNAGVAENDSALGDAFEA 154 Query: 122 LIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQE-WAHAKFGVTPEYKVT 178 LI A+YLD E + + A + + K +LQE Y+ Sbjct: 155 LIGAIYLDSDFETSRKIILELYNYLDTAPTAKGVIANPKGKLQELIQPVHGNNALRYETI 214 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++G H+ F V V +G +K+ A + AA + + Sbjct: 215 AQTGEAHEREFEVAVFCHDEQLGKGAGRTKKEAAEKAALIAIAKI 259 >gi|90101636|sp|Q4KHT1|RNC_PSEF5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 229 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 76/217 (35%), Positives = 110/217 (50%), Gaps = 10/217 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ S LE+++GY+F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSVSLSRLERQLGYSFKDQELMLLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+ Sbjct: 58 RFPQAREGQLSRLRARLVKGETLAVLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD G+E A V + +D KT LQE+ ++ P Y+V Sbjct: 118 LIGAIYLDAGMETARDRVLSWLASEFESLTLVDTNKDPKTRLQEFLQSRACELPRYEVVD 177 Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213 G H F V E+ + ++G S+R AEQ Sbjct: 178 IQGEPHCRTFFVECEVTLLNEK--SRGQGVSRRIAEQ 212 >gi|152986476|ref|YP_001350091.1| ribonuclease III [Pseudomonas aeruginosa PA7] gi|189043330|sp|A6VAK6|RNC_PSEA7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|150961634|gb|ABR83659.1| ribonuclease III [Pseudomonas aeruginosa PA7] Length = 229 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 76/216 (35%), Positives = 112/216 (51%), Gaps = 7/216 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL +I LF Sbjct: 1 MSN-PLDRLERKLGYTFKDQDLMVLALTHRSYA---GRNNERLEFLGDAILNFVIGEALF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +HF A+EG+LS LV ET + +AR ++ ++R+ S K SI AD +E Sbjct: 57 HHFPQAREGQLSRLRARLVKGETLALLARGFEVGDYLRLGSGELKSGGFRRESILADAME 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD G++ A + + + +D KT LQE+ ++ P Y+V Sbjct: 117 ALIGAIYLDTGMDSARERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRGCDLPRYEVV 176 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213 G H F V E++ L+ G S+R AEQ Sbjct: 177 DIQGEPHCRTFFVDCEVALLSDKTHGHGGSRRIAEQ 212 >gi|260771922|ref|ZP_05880840.1| ribonuclease III [Vibrio metschnikovii CIP 69.14] gi|260613214|gb|EEX38415.1| ribonuclease III [Vibrio metschnikovii CIP 69.14] Length = 204 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 6/204 (2%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 E ALTH S + ERLEFLGD IL +I+ L+ F EG++S +LV T Sbjct: 2 ELALTHRSA---NGKHNERLEFLGDSILSFVIADELYRRFPKINEGDMSRMRATLVRGNT 58 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 +++ RE L ++++ K SI AD VE++I A+YLD IE+A + ++ Sbjct: 59 LAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEMARGIILNWY 118 Query: 144 KQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200 + R ++D KT LQE+ K P Y VT G H+ FTV +++G+ P Sbjct: 119 QPRLDAIKPGVSQKDPKTRLQEFLQGKRSPLPIYIVTNIKGEAHNQEFTVSCDVAGIATP 178 Query: 201 AQGMDCSKRAAEQVAAAEVLKREG 224 G S+R AEQ AA L++ Sbjct: 179 VIGKGTSRRKAEQAAAETALEQLN 202 >gi|195455348|ref|XP_002074681.1| GK23200 [Drosophila willistoni] gi|194170766|gb|EDW85667.1| GK23200 [Drosophila willistoni] Length = 1320 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 6/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + E +G F + LL +A T S +H S +RLEFLGD +L L+ S L+ HF Sbjct: 961 LTKFEDSVGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1020 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG LS+ +SLV+ T + V +L + + ++ + + SL Sbjct: 1021 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLKTKDRADLLEAFLGSLY 1080 Query: 124 A----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + + K + P YKV Sbjct: 1081 VDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVVE 1140 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP + + V V A S + AE AA + L+ Sbjct: 1141 ASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1183 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 20/34 (58%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE+ IGY F NR LL+ ALTH S +Y + Sbjct: 729 LDLLEESIGYHFKNRYLLQLALTHPSYKENYGTN 762 Score = 43.4 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 49/98 (50%) Query: 36 YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A++L L Sbjct: 814 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 873 Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 F+ + + A+ E+L+ AL LDGGI+ Sbjct: 874 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 911 >gi|261377909|ref|ZP_05982482.1| ribonuclease III [Neisseria cinerea ATCC 14685] gi|269145767|gb|EEZ72185.1| ribonuclease III [Neisseria cinerea ATCC 14685] Length = 239 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 11/229 (4%) Query: 1 MSALRYS-----TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55 M ++K++GY F + SLL +ALTH S + + ER EF+GD IL + Sbjct: 1 MKNDVLKQQAHTAIQKKLGYEFRDISLLRQALTHRSC---HAKHNERFEFVGDSILNYTV 57 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + +LF+ F EGELS SLV+ +++A E+D+ + + + K SI Sbjct: 58 ARMLFDAFPKLTEGELSRLRASLVNEGVLAEIAAEMDVGEGLYLGTGELKSGGFRRPSIL 117 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTP 173 AD +E++ AA+ D A V + +R + +D KT LQE A+ P Sbjct: 118 ADAMEAMFAAVSFDADFNTAEKVVRHLFSERVKRADFQNQEKDGKTALQEALQARRFALP 177 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 +Y++ + G +D F + ++ L + S++AAEQ AA E L+ Sbjct: 178 KYRIEEQIGHANDSMFVISCDLGELGFVCRAKGTSRKAAEQSAAKEALQ 226 >gi|242240203|ref|YP_002988384.1| ribonuclease III [Dickeya dadantii Ech703] gi|242132260|gb|ACS86562.1| ribonuclease III [Dickeya dadantii Ech703] Length = 226 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+K++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQKKLGYTFQQYDLLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + K+++ R A+ G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQAVERLILKWYQSRLDAISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRK 210 >gi|118498035|ref|YP_899085.1| ribonuclease III [Francisella tularensis subsp. novicida U112] gi|194323260|ref|ZP_03057044.1| ribonuclease III [Francisella tularensis subsp. novicida FTE] gi|208779555|ref|ZP_03246900.1| ribonuclease III [Francisella novicida FTG] gi|254373391|ref|ZP_04988879.1| ribonuclease III [Francisella tularensis subsp. novicida GA99-3549] gi|189043316|sp|A0Q7W6|RNC_FRATN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|118423941|gb|ABK90331.1| ribonuclease III [Francisella novicida U112] gi|151571117|gb|EDN36771.1| ribonuclease III [Francisella novicida GA99-3549] gi|194322624|gb|EDX20104.1| ribonuclease III [Francisella tularensis subsp. novicida FTE] gi|208744516|gb|EDZ90815.1| ribonuclease III [Francisella novicida FTG] gi|332678757|gb|AEE87886.1| Ribonuclease III [Francisella cf. novicida Fx1] Length = 230 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 9/222 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS +GY F + +LL +ALTH S +++YERLEFLGD +L +I+ +L+ F Sbjct: 5 YSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFTD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T +Q+A L + +I + I DV E++I A Sbjct: 62 LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYII--LGASEQGGHKREKILEDVFEAVIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD + K+++ +D+K++LQE PEY + G Sbjct: 120 IYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETIDG 179 Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 DH+ +FTVV L + S++ AEQ AA ++++ Sbjct: 180 KDHEQQFTVVAMSKDLNLRVKAQGTSRKKAEQKAAEKMIEML 221 >gi|121996844|ref|YP_001001631.1| ribonuclease III [Halorhodospira halophila SL1] gi|121588249|gb|ABM60829.1| RNAse III [Halorhodospira halophila SL1] Length = 234 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 104/223 (46%), Gaps = 6/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L++R+ Y F L++A+TH S ERLEFLGD +L +++ +F+ Sbjct: 3 DLERLQQRLDYQFLELERLQEAVTHRSAG---GRHNERLEFLGDSVLNFVVAHEVFHRRP 59 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG LS SLV+ + + +AR+++L +R+ K SI AD +E++ Sbjct: 60 TDSEGTLSRLRASLVNRSSLAAIARDIELGDHLRLGGGELKSGGHRRDSILADALEAVFG 119 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G E A + ++ R +D KT LQE + P Y+V G Sbjct: 120 AVYLDAGFETAARVITGLYRSRLESLPDKAVLKDPKTRLQEVLQSTRRPLPGYQVLDVRG 179 Query: 183 PDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREG 224 H RF V +S G S+R AEQ AA +L G Sbjct: 180 RAHHQRFQVECRLSDSEQTTLGEAGSRRQAEQRAAEAMLVEIG 222 >gi|88856701|ref|ZP_01131356.1| ribonuclease III [marine actinobacterium PHSC20C1] gi|88813998|gb|EAR23865.1| ribonuclease III [marine actinobacterium PHSC20C1] Length = 233 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 100/224 (44%), Gaps = 10/224 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + L +G N +L ALTH S ++ + ERLEFLGD ILG ++ L+ Sbjct: 10 AELSAVLGVEI-NPDVLTLALTHRSFAYENGGIANNERLEFLGDSILGQAVTVKLYRDNP 68 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ R SLVS+ +++AR + L ++IR+ + SI AD VE++I Sbjct: 69 ELDEGDLAKRRASLVSSVALAEIARLIGLGAYIRLGKGEEQTGGREKPSILADTVEAIIG 128 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A YLD G + A V + +F + A+ G SGP Sbjct: 129 AAYLDLGGDAATALVLRLVAPLLADPERFGAAMDPKTSLQELAAQLGRGVPDYRIEDSGP 188 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 DH RF + +S A G SK+ AE AA E WT Sbjct: 189 DHSKRFHASLVLSNDVIATGTGSSKKQAEMAAALEA------WT 226 >gi|239944597|ref|ZP_04696534.1| ribonuclease III [Streptomyces roseosporus NRRL 15998] Length = 271 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 20 LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 78 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R L+L SFIR+ SI AD +E++I A+ Sbjct: 79 PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 138 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G+ A V + + +S + A + + +GPDH Sbjct: 139 YLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLVTETGPDH 198 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G++ G SK+ AEQ AA + Sbjct: 199 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWREI 236 >gi|152995275|ref|YP_001340110.1| ribonuclease III [Marinomonas sp. MWYL1] gi|189043327|sp|A6VUP6|RNC_MARMS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|150836199|gb|ABR70175.1| Ribonuclease III [Marinomonas sp. MWYL1] Length = 227 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 87/217 (40%), Positives = 120/217 (55%), Gaps = 7/217 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS+L Y L +RIGY FA+ LLE ALTH S ++ ERLEFLGD IL +I+ LF Sbjct: 1 MSSL-YQKLSRRIGYFFADLGLLELALTHRSFG---GKNNERLEFLGDSILNYVIAEDLF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F AKEGELS SLV +T +++ARE +L ++++ + K SI AD VE Sbjct: 57 HRFPKAKEGELSRLRASLVKGDTLAELAREFELGDYLKLGAGELKSGGFRRDSILADTVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+YLD G++V + ++K+R + +DAKT LQE+ A+ P+Y V Sbjct: 117 GIIGAMYLDAGMDVCRQHILAWYKERLDATSLKIVTKDAKTRLQEFLQARKHALPQYDVV 176 Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQV 214 G HD F V I +G S+R AEQ Sbjct: 177 NIVGEPHDQTFYVHCHIELCEEFIEGKGNSRRIAEQN 213 >gi|239991059|ref|ZP_04711723.1| ribonuclease III [Streptomyces roseosporus NRRL 11379] gi|291448061|ref|ZP_06587451.1| ribonuclease III [Streptomyces roseosporus NRRL 15998] gi|291351008|gb|EFE77912.1| ribonuclease III [Streptomyces roseosporus NRRL 15998] Length = 274 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 23 LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 81 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R L+L SFIR+ SI AD +E++I A+ Sbjct: 82 PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 141 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G+ A V + + +S + A + + +GPDH Sbjct: 142 YLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLVTETGPDH 201 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G++ G SK+ AEQ AA + Sbjct: 202 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWREI 239 >gi|182435701|ref|YP_001823420.1| ribonuclease III [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464217|dbj|BAG18737.1| putative ribonuclease III [Streptomyces griseus subsp. griseus NBRC 13350] Length = 274 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 23 LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 81 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R L+L SFIR+ SI AD +E++I A+ Sbjct: 82 PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 141 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G+ A V + + +S + A + + +GPDH Sbjct: 142 YLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLVTETGPDH 201 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G++ G SK+ AEQ AA + Sbjct: 202 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWREI 239 >gi|326776326|ref|ZP_08235591.1| ribonuclease III [Streptomyces cf. griseus XylebKG-1] gi|326656659|gb|EGE41505.1| ribonuclease III [Streptomyces cf. griseus XylebKG-1] Length = 274 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 23 LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 81 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R L+L SFIR+ SI AD +E++I A+ Sbjct: 82 PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 141 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G+ A V + + +S + A + + +GPDH Sbjct: 142 YLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLVTETGPDH 201 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G++ G SK+ AEQ AA + Sbjct: 202 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWREI 239 >gi|312863862|ref|ZP_07724100.1| ribonuclease III [Streptococcus vestibularis F0396] gi|322516541|ref|ZP_08069457.1| ribonuclease III [Streptococcus vestibularis ATCC 49124] gi|311101398|gb|EFQ59603.1| ribonuclease III [Streptococcus vestibularis F0396] gi|322124929|gb|EFX96349.1| ribonuclease III [Streptococcus vestibularis ATCC 49124] Length = 229 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 65/212 (30%), Positives = 101/212 (47%), Gaps = 6/212 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ L LE+ G F + LLE A TH+S ++ ++ ERLEFLGD L L+IS Sbjct: 1 MNQLEQK-LEQDFGIVFNQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + + EGE+S +++V E+ + ++ +IR+ K +I Sbjct: 60 VYLYKRYPNKPEGEMSKMRSTIVREESLAGFSKACGFEQYIRLGKGEEKSGGRERATILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD G+ F+++ + K + D KT LQE V Y Sbjct: 120 DLWEAFLGALYLDQGLPAVEKFLNQVMIPQVEKGNFDRVTDYKTALQERLQVNGTVDITY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 V SGP H FT+ V + G + G+ S Sbjct: 180 TVIDESGPAHAKEFTMQVAVDGKELSTGLGKS 211 >gi|198283249|ref|YP_002219570.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665431|ref|YP_002425832.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247770|gb|ACH83363.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517644|gb|ACK78230.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270] Length = 226 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 108/220 (49%), Gaps = 5/220 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +L++ +GY F +SLL +ALTH S ERLEFLGD L +++ LF F Sbjct: 4 LESLQQSVGYQFREQSLLLQALTHRSAG---ARHNERLEFLGDAALNFVVAAKLFARFPK 60 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS LV ET +++A ++ LA + + + + SI+AD +E++I A Sbjct: 61 VSEGDLSRMRARLVREETLAEIAGKIALADSLILGPGEIRSGGARRDSIRADALEAVIGA 120 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +LDGG A V + + G+ RD KT LQE+ + P Y G Sbjct: 121 AFLDGGFGAAERIVAQLVEPLMTDDLGGEELRDPKTRLQEFLQGQGRPVPVYTTVAEKGQ 180 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H+ RF + G + D S+R AEQ AAA +L + Sbjct: 181 AHERRFVARCSVPGAEATEAEDGSRRKAEQQAAALMLAQL 220 >gi|114775465|ref|ZP_01451033.1| ribonuclease III [Mariprofundus ferrooxydans PV-1] gi|114553576|gb|EAU55957.1| ribonuclease III [Mariprofundus ferrooxydans PV-1] Length = 229 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 61/219 (27%), Positives = 95/219 (43%), Gaps = 1/219 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFD 64 L++ IGY F N +LL++ALTH S S ERLEFLGD +LGL+++ L F Sbjct: 8 LQQLQQVIGYRFNNPALLKRALTHCSALRSAVSGDLERLEFLGDAVLGLVVAEYLHQSFP 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV ++ VA + L++ + V R + SI A+ VE++I Sbjct: 68 EEPEGQLSRMRANLVCRDSLLVVASDWRLSACLIVGDGERGEYGIKSPSIVANAVEAVIG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A++ + G + + V W+ G+ + G V G Sbjct: 128 AVFEESGWDASRRVVLTAWRPMLDDIGRVDPRDAKSRLQELTQGKGWGLPEYVLVDRGVG 187 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + PRF + G K+ AE AA + + Sbjct: 188 YQPRFEATCSVQEKVVGHGSGERKKLAEIAAAEQAWSKL 226 >gi|229588601|ref|YP_002870720.1| ribonuclease III [Pseudomonas fluorescens SBW25] gi|259491960|sp|C3K6Y7|RNC_PSEFS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|229360467|emb|CAY47324.1| ribonuclease III [Pseudomonas fluorescens SBW25] Length = 229 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 75/217 (34%), Positives = 107/217 (49%), Gaps = 10/217 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + + LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MTVSLARLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS LV ET + +AR L ++R+ S K SI AD +E+ Sbjct: 58 RFPQAREGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD G+E A V + +D KT LQE+ ++ P Y+V Sbjct: 118 LIGAIYLDAGMEAAKERVTAWLTSEIESLTLVDTNKDPKTRLQEFLQSRGCELPRYEVVD 177 Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213 G H F V EI + ++G S+R AEQ Sbjct: 178 IQGEPHCRVFFVECEITLLNEK--SRGQGVSRRIAEQ 212 >gi|227494679|ref|ZP_03924995.1| ribonuclease III [Actinomyces coleocanis DSM 15436] gi|226831861|gb|EEH64244.1| ribonuclease III [Actinomyces coleocanis DSM 15436] Length = 256 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 59/219 (26%), Positives = 94/219 (42%), Gaps = 4/219 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLF 60 + L +F + LL ALTH S + E ERLEFLGD +L ++++ L+ Sbjct: 17 NTNLADLFGVWQISF-DPELLILALTHRSFAFEVGNIEPNERLEFLGDSVLSIIVTEYLY 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ + E LS ++VS +T SQVAR + L FI + SI D+ E Sbjct: 76 KNYPQSSEANLSRMRGAIVSEKTLSQVARNIRLGDFILLGKGENLTGGRDRDSILCDMTE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT-F 179 ++I A YL G+E V+ + + ++ + + + + + E Sbjct: 136 AMIGATYLSHGLEATRRIVEYHLRPFLERAVELGKSSDYKTTLQEYCAEASLGEPIYEAE 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 GPDH F V + G G SK+ A+ AA Sbjct: 196 GFGPDHARYFIATVTVGGELVGHGQASSKKGAKSEAARA 234 >gi|78189616|ref|YP_379954.1| ribonuclease III [Chlorobium chlorochromatii CaD3] gi|90101617|sp|Q3AQ14|RNC_CHLCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|78171815|gb|ABB28911.1| RNAse III [Chlorobium chlorochromatii CaD3] Length = 248 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 109/230 (47%), Gaps = 8/230 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSS-----ISHSYQESYERLEFLGDRILGLLI 55 M + L+ IG N L + ALTH S + ES +RLEFLGD +LGLLI Sbjct: 1 MPPETLAYLQTLIGSLDGNARLYQTALTHRSVIGNTALSHHNESNQRLEFLGDAVLGLLI 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S LF +F ++ EG+LS +V++++ + AR + L + + S Sbjct: 61 SHFLFQNFPASAEGDLSKTRAKIVNSKSLACFARSIGLGEHLLLGESAAHYNIRDSESAL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 AD ESLI A+YLD G++ A F Q ++ K+ L E++ A P Sbjct: 121 ADAFESLIGAIYLDKGLDAAYGFVDKHIIHHQSFSAIVASEQNYKSCLIEYSQAHHVAAP 180 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y V G +HD FTV V + + G K+ AEQ+AA E ++R Sbjct: 181 VYTVIAEHGAEHDKEFTVEVSCNNIK-GCGTARRKKDAEQLAAKEAMERI 229 >gi|333024194|ref|ZP_08452258.1| putative ribonuclease III [Streptomyces sp. Tu6071] gi|332744046|gb|EGJ74487.1| putative ribonuclease III [Streptomyces sp. Tu6071] Length = 314 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 4/212 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 65 LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 123 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V+R LDL +FIR+ SI AD +E++I A+ Sbjct: 124 PEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 183 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + KS + + A G+ + GPDH Sbjct: 184 YLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQELTAMEGLGVPEYLVTEEGPDH 243 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + FT + G++ G SK+ AEQ AA Sbjct: 244 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 275 >gi|302522137|ref|ZP_07274479.1| ribonuclease III [Streptomyces sp. SPB78] gi|302431032|gb|EFL02848.1| ribonuclease III [Streptomyces sp. SPB78] Length = 286 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 4/212 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 37 LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 95 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V+R LDL +FIR+ SI AD +E++I A+ Sbjct: 96 PEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 155 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + KS + + A G+ + GPDH Sbjct: 156 YLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQELTAMEGLGVPEYLVTEEGPDH 215 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + FT + G++ G SK+ AEQ AA Sbjct: 216 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 247 >gi|197285743|ref|YP_002151615.1| ribonuclease III [Proteus mirabilis HI4320] gi|238693201|sp|B4F047|RNC_PROMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|194683230|emb|CAR43912.1| RNase III, ds RNA [Proteus mirabilis HI4320] Length = 226 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 77/213 (36%), Positives = 115/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L + L+K++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNTLLVNQLQKKLGYTFKQNELLLQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A++LD I+ + K+++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGAIFLDSDIQNIENIILKWYENRLAEISPGDKQKDPKTRLQEYLQGRHLPLPSYVVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ +ISG+ P +GM S+R Sbjct: 178 QVRGEAHDQEFTIHCQISGIDQPVKGMGTSRRK 210 >gi|318056548|ref|ZP_07975271.1| ribonuclease III [Streptomyces sp. SA3_actG] gi|318076722|ref|ZP_07984054.1| ribonuclease III [Streptomyces sp. SA3_actF] Length = 275 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 4/212 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 26 LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 84 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V+R LDL +FIR+ SI AD +E++I A+ Sbjct: 85 PEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 144 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + KS + + A G+ + GPDH Sbjct: 145 YLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQELTAMEGLGVPEYLVTEEGPDH 204 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + FT + G++ G SK+ AEQ AA Sbjct: 205 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 236 >gi|227503342|ref|ZP_03933391.1| ribonuclease III [Corynebacterium accolens ATCC 49725] gi|227075845|gb|EEI13808.1| ribonuclease III [Corynebacterium accolens ATCC 49725] Length = 256 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 108/225 (48%), Gaps = 6/225 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 A+ +S L + +G A L ALTH S ++ + ERLEFLGD +LGL ++ L+ Sbjct: 19 AVDHSPLLESLGVALE-PENLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVAAKLY 77 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + S E ++S S+VS S +ARE++L I + + SI AD E Sbjct: 78 VTYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTE 137 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ A+Y + G E A + + + ++ + D KT LQE P Y T Sbjct: 138 AIFGAIYREHGFETARDVILRLFAEKIDNASVSGRHLDWKTTLQELCAELKAPMPVYSAT 197 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP+HD F+ V ++GL G +K+ AEQ AA E + Sbjct: 198 A-TGPEHDQTFSAVATVAGLTVGNGQGHNKKLAEQQAAQEACQTL 241 >gi|312879974|ref|ZP_07739774.1| ribonuclease III [Aminomonas paucivorans DSM 12260] gi|310783265|gb|EFQ23663.1| ribonuclease III [Aminomonas paucivorans DSM 12260] Length = 232 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 7/215 (3%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 + + Y F + LL +ALTH+S ++ ERLEFLGD +L L +S L+ A+E Sbjct: 13 RALRYRFHRQELLTEALTHASFANESGLSRCNERLEFLGDAVLELCVSERLYRERPDAEE 72 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ ++LV A ++ R + + + + R+ + ++ AD E+++ A+YL Sbjct: 73 GDLTRWRSALVCAPNLARWGRLWGIPACLLLGKGFRRGGPNE--NMVADAFEAVLGAIYL 130 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG++ + L + +D K+ LQE + P Y++ +SGP H+ Sbjct: 131 DGGLDAVREVLHPLPLPEVL---EEGKDPKSRLQEVLQGQGHPCPRYELREQSGPPHERW 187 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V V A G S R AE+ AA L+ Sbjct: 188 FVVEVSCGEQVLASGEGRSLREAERCAANRALESM 222 >gi|296130133|ref|YP_003637383.1| ribonuclease III [Cellulomonas flavigena DSM 20109] gi|296021948|gb|ADG75184.1| ribonuclease III [Cellulomonas flavigena DSM 20109] Length = 240 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 100/224 (44%), Gaps = 10/224 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 +L +++G + LL ALTH S +H + ERLEFLGD +LGL+++ L+ Sbjct: 6 QSLLEKLGVHL-DPELLVLALTHRSFAHEAGGIPTNERLEFLGDTVLGLVVTEHLYRTHP 64 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ + VS +QVAR LDL S++ + SI +D +E+L Sbjct: 65 GNSEGDLAKMRAATVSQRALAQVARSLDLGSYVLLGKGELATGGRDKDSILSDTLEALFG 124 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YL G+E A VD+ + + + A G+ Y GP Sbjct: 125 AVYLSHGLEPARVLVDRLVRPTLTAAADLGAGLDWKTSLQELSASLGLGAPYYEVTGEGP 184 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 DH FT + G G +K+ AEQ AA+ WT Sbjct: 185 DHARTFTASAVVGGEVRGTGTGPAKKIAEQEAASAA------WT 222 >gi|320008314|gb|ADW03164.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331] Length = 274 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 23 LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 81 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R L+L SFIR+ SI AD +E++I A+ Sbjct: 82 PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 141 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G+ A V + + +S + A + + +GPDH Sbjct: 142 YLDQGLGAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLVTETGPDH 201 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G++ G SK+ AEQ AA + Sbjct: 202 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWREI 239 >gi|253988786|ref|YP_003040142.1| ribonuclease III [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780236|emb|CAQ83397.1| ribonuclease III [Photorhabdus asymbiotica] Length = 226 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 70/213 (32%), Positives = 107/213 (50%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFDQHDLLIQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGYRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ P Y V Sbjct: 118 ALIGGIFLDSDIQTVERTILRWYETRLNEISPGDKQKDPKTRLQEYLQGHHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G HD FT+ ++SG+ P +G S+R Sbjct: 178 MVRGEAHDQEFTIHCQVSGIEQPVKGTGSSRRK 210 >gi|325294757|ref|YP_004281271.1| ribonuclease 3 [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065205|gb|ADY73212.1| Ribonuclease 3 [Desulfurobacterium thermolithotrophum DSM 11699] Length = 234 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 117/234 (50%), Gaps = 12/234 (5%) Query: 1 MSALRYSTLEKRIGYAF-----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55 M + LE++I Y F ++L K+ S +E+YE LEFLGD ++GL++ Sbjct: 1 MEKKSFEELERKINYFFKDKKLLKKALTHKSF---SFEKDSEENYEVLEFLGDAVIGLIV 57 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L F + EGELS LVS + S++A+ +DL S+I + +SI Sbjct: 58 SEELIKRFPTKTEGELSQIRAFLVSEPSLSELAKTVDLGSYIYLGKGEHLSGGREKSSIL 117 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVT 172 DV ESL A+YLDGG E A + + + + + +D K+ LQE +F V Sbjct: 118 CDVFESLFGAIYLDGGFENAKEVFKRNFLMKLWEILEEAVTYKDFKSFLQEVTQKEFKVI 177 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P Y V GP+H+ FTV + L SKR+AEQ AA E+LK G+ Sbjct: 178 PSYSVIKAEGPEHEKIFTVECRVKDLKTVS-TGKSKRSAEQQAAKEMLKVLGVI 230 >gi|227112907|ref|ZP_03826563.1| ribonuclease III [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|253689440|ref|YP_003018630.1| ribonuclease III [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259491904|sp|C6DC00|RNC_PECCP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|251756018|gb|ACT14094.1| ribonuclease III [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 226 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQRKLGYTFQQYELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRA 210 G HD FT+ ++SG + + G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRK 210 >gi|227328581|ref|ZP_03832605.1| ribonuclease III [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 226 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQRKLGYTFQQYDLLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRA 210 G HD FT+ ++SG + + G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRK 210 >gi|189425004|ref|YP_001952181.1| ribonuclease III [Geobacter lovleyi SZ] gi|189421263|gb|ACD95661.1| Ribonuclease III [Geobacter lovleyi SZ] Length = 228 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 7/205 (3%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAK 67 +G++F N+ LL++ALTH S + ++ Y+RLEFLGD +LG L++ LL HF + Sbjct: 8 ILGHSFINQRLLQQALTHPSYLNEARQEGAADYQRLEFLGDAVLGFLLADLLCQHFPALP 67 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS +SLV +++A + + I + ++ SI ADV E+L+ A++ Sbjct: 68 EGDLSRLRSSLVDQPRLARLAVDAGIPPLILMGKGAEREGGRTNPSILADVFEALLGAIH 127 Query: 128 LDGGIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D G V + DAK+ELQE A+ P Y + + GPD Sbjct: 128 CDAGFAAVQQVVKHIYAPLVNAIAAGTPAHHDAKSELQELLAARKQAAPVYNLVDQQGPD 187 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 HD F + V + G+ QG SK+ Sbjct: 188 HDRLFCIEVSVDGMPLGQGQGRSKK 212 >gi|306836417|ref|ZP_07469394.1| ribonuclease III [Corynebacterium accolens ATCC 49726] gi|304567698|gb|EFM43286.1| ribonuclease III [Corynebacterium accolens ATCC 49726] Length = 256 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 6/225 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 A+ +S L + +G A L ALTH S ++ + ERLEFLGD +LGL ++ L+ Sbjct: 19 AVDHSPLLESLGVALE-PENLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVAAKLY 77 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + S E ++S S+VS S +ARE++L I + + SI AD E Sbjct: 78 VTYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTE 137 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ A+Y + G E A + + + ++ + D KT LQE P Y T Sbjct: 138 AIFGAIYREHGFETARDVILRLFAEKIDNASVSGRHLDWKTTLQELCAELKAPMPVYSAT 197 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP+HD F+ V ++GL+ G +K+ AEQ AA E + Sbjct: 198 A-TGPEHDQTFSAVATVAGLSVGNGQGHNKKLAEQQAAQEACQTL 241 >gi|319440517|ref|ZP_07989673.1| ribonuclease III [Corynebacterium variabile DSM 44702] Length = 247 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 4/205 (1%) Query: 23 LEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 L AL+H S ++ + ERLEFLGD +LGL ++ L+ F E ++S +V+ Sbjct: 38 LRLALSHRSFANENGNLPNNERLEFLGDALLGLSVAEQLYRQFPDRSESDISKMRAGVVN 97 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 ++VAREL + I + + SI AD VE+++ A+YL+ G EVA V Sbjct: 98 MYALAEVARELGMGGNILLGRGEEMTGGADKHSILADSVEAMLGAIYLECGFEVARATVL 157 Query: 141 KYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + ++++ + D KT L E + GPDHD F+ V G Sbjct: 158 RIFERKITTAPSTGLTMDWKTVLLEKMSDLKISGDPVYASDVKGPDHDQTFSATVSFDGE 217 Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223 A G +K+ AE AA E + Sbjct: 218 ARGTGTGHTKKEAEHHAAREAYRTL 242 >gi|304310579|ref|YP_003810177.1| Ribonuclease III [gamma proteobacterium HdN1] gi|301796312|emb|CBL44520.1| Ribonuclease III [gamma proteobacterium HdN1] Length = 231 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 107/228 (46%), Gaps = 7/228 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L RIGY F + +LL ALTH S+S Q + ERLEFLGD +L L+I LF Sbjct: 1 MKQTSL--LCSRIGYTFNDFNLLNLALTHRSVS--GQTNNERLEFLGDSVLNLIIGGELF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F KEG+LS SLV ET +Q+ E L F+ + K + S AD VE Sbjct: 57 TKFPQGKEGQLSRLRASLVRGETLAQIGGEFGLGEFLILGPGEHKSGGARRESTLADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A++ + G A V +++ R +D KT LQE PEY++ Sbjct: 117 AIIGAIFCESGYNEARKVVLRWFDSRIQALTLNDTVKDNKTRLQEILQHLKMGLPEYRIL 176 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 SG H F + I+G G S+R AEQ AA L + Sbjct: 177 SVSGSSHQQVFQIECAITGVEERFAGSGLSRRQAEQQAAGFALASLSV 224 >gi|319948353|ref|ZP_08022497.1| ribonuclease III [Dietzia cinnamea P4] gi|319437984|gb|EFV92960.1| ribonuclease III [Dietzia cinnamea P4] Length = 237 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 99/209 (47%), Gaps = 8/209 (3%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 L +ALTH S ++ + ERLEFLGD +L L+++ L+N + EG+L+ SLV Sbjct: 20 LATQALTHRSYAYEHGGLPHNERLEFLGDAVLELVVTEYLYNAYPDRPEGDLAKIRASLV 79 Query: 80 SAETCSQVARELDLA---SFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + + +AREL +R+ SI AD +E++ ++YL G+E A Sbjct: 80 NTYVLADIARELGDGGLGRHLRLGRGEELTGGRDKHSILADTLEAVFGSVYLTHGLETAR 139 Query: 137 TFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 ++K R D KT LQE + Y++T +GPDHD F+ VV Sbjct: 140 GLIEKIIGDRLTVVPHLGAALDWKTSLQEKCASLGRSKARYEITS-TGPDHDKTFSAVVF 198 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +G +K+ AEQ AA + Sbjct: 199 VGDDPLGEGTGRTKKEAEQKAAEQAWAAL 227 >gi|329894313|ref|ZP_08270183.1| Ribonuclease III [gamma proteobacterium IMCC3088] gi|328923109|gb|EGG30432.1| Ribonuclease III [gamma proteobacterium IMCC3088] Length = 221 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 114/223 (51%), Gaps = 6/223 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ S L++ IGY F + SL+E AL H S+ ++ ERLEFLGD ++ +++ LF + Sbjct: 1 MQLSALQQAIGYQFKDLSLIELALAHRSVG---AKNNERLEFLGDSLVNHVVAEALFKRY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGE+S R LV ET + +ARE +L F+ + RK SI AD +E++ Sbjct: 58 PKAPEGEMSRRRAYLVKGETLAAIAREKNLGDFVELGQGERKSGGHRRKSILADALEAVA 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+ LD E A V +++ R F +DAKT LQEW + PEY + Sbjct: 118 AAILLDSDFETAKQVVFAWFRDRLNDETSFAASKDAKTSLQEWLQGRGLALPEYHLVATR 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 G DH F V + S+R AEQ +A ++L R Sbjct: 178 GEDHQKVFVVECRVPSKGLKETASASSRRRAEQTSAQQILDRL 220 >gi|226328142|ref|ZP_03803660.1| hypothetical protein PROPEN_02033 [Proteus penneri ATCC 35198] gi|225203846|gb|EEG86200.1| hypothetical protein PROPEN_02033 [Proteus penneri ATCC 35198] Length = 227 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 74/214 (34%), Positives = 108/214 (50%), Gaps = 7/214 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L + L+K++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNTLLVNQLQKKLGYTFTQNELLLQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALY---LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +LI A++ IE + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGAIFLDSDIQNIEKKIILNWYENRLAEISPGDKQKDPKTRLQEYLQGRHLPLPSYNV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G HD FT+ +ISG+ P +GM S+R Sbjct: 178 VQVRGEAHDQEFTIHCQISGIEQPVKGMGTSRRK 211 >gi|15639796|ref|NP_219246.1| ribonuclease III (rnc) [Treponema pallidum subsp. pallidum str. Nichols] gi|189026034|ref|YP_001933806.1| ribonuclease III [Treponema pallidum subsp. pallidum SS14] gi|6094109|sp|O83787|RNC_TREPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238689343|sp|B2S448|RNC_TREPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|3323122|gb|AAC65778.1| ribonuclease III (rnc) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018609|gb|ACD71227.1| ribonuclease III [Treponema pallidum subsp. pallidum SS14] gi|291060165|gb|ADD72900.1| ribonuclease III [Treponema pallidum subsp. pallidum str. Chicago] Length = 254 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 7/225 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTLLF 60 L++ +G F + + L++AL+H S+ H ER+EFLGD +LG + + L+ Sbjct: 24 LRRLQETLGVKFRDPTALDQALSHRSLFSSKEDHCGVRHNERMEFLGDAVLGAVAAACLY 83 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG+L+ LVS +T S +A L + ++ + +I AD E Sbjct: 84 RALPDSHEGDLAKTKAVLVSTDTLSDIALSLRIDHYLLLGKGEELSGGRHKKAILADATE 143 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178 ++I AL+LD G + A FV + R + D K+ LQ AH ++ PEY V Sbjct: 144 AVIGALFLDSGFKAAERFVLRLLLPRVRPIREKNLHHDYKSTLQVLAHQRYRSKPEYTVV 203 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 R+GPDH RF V V + G SK++AEQ AA ++ Sbjct: 204 KRTGPDHSVRFWVDVTVGDARFGPGYGTSKKSAEQCAARLAWEQL 248 >gi|317401886|gb|EFV82493.1| ribonuclease 3 [Achromobacter xylosoxidans C54] Length = 253 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 110/221 (49%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +TLE R+ + F + +LLE+ALTH S ERLEFLGD +L +++ +LF + Sbjct: 1 MSLATLENRLDHHFGDPALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLFERY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + + +A+ L+L+ ++R+ K SI AD VE+L Sbjct: 58 SKIDEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A + + ++ +DAKT LQE+ + P Y V Sbjct: 118 GAVFLDAGFDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPVYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H +F V I L S+RAAEQ AA L+ Sbjct: 178 GAAHSQQFEVECAIPALEIKVNAPGASRRAAEQSAAKLALE 218 >gi|269218651|ref|ZP_06162505.1| ribonuclease III [Actinomyces sp. oral taxon 848 str. F0332] gi|269211762|gb|EEZ78102.1| ribonuclease III [Actinomyces sp. oral taxon 848 str. F0332] Length = 228 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 105/223 (47%), Gaps = 4/223 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNH 62 + Y L +R G LL ALTH S + + E ERLEFLGD +LG + + +F Sbjct: 1 MSYRELVERWGVDIRRP-LLRLALTHRSFAFEHDEPHNERLEFLGDSVLGFITADKVFRE 59 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F ++EG++S VS + + +AREL+L FIR+ SI +D VE+L Sbjct: 60 FPDSREGDMSRMKTFAVSEKALASIARELELGRFIRLGRGEDLSGGRDKDSILSDTVEAL 119 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 IAA YL G++VA V++ + + D +T +E AH + V Sbjct: 120 IAATYLQHGLDVARKIVERLVAAKIEDASLLGPNLDWQTSFEEVAHERGMVGSLQFELTS 179 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH +T V + G +G SK+ A Q AA + Sbjct: 180 EGPDHQRVYTAVASMGGRVWGEGTGSSKKTARQAAAQVAYRTI 222 >gi|149186754|ref|ZP_01865065.1| ribonuclease III [Erythrobacter sp. SD-21] gi|148829662|gb|EDL48102.1| ribonuclease III [Erythrobacter sp. SD-21] Length = 223 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 118/214 (55%), Gaps = 3/214 (1%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 ++ G+ N +L + ALTH S+ ++ YERLEFLGDR+LGL I+ A EG+ Sbjct: 13 EKTGFTVNNEALWQAALTHGSMGE--KDDYERLEFLGDRVLGLSIA-HWLYEQSDAPEGK 69 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ R N++VS E C+ VAR ++L+ +R+S R D +I DV+E+L+ A +LD Sbjct: 70 LAQRLNAIVSREMCAIVARGIELSEHMRISKQARADGGKDSDNILGDVMEALLGAQFLDN 129 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 G + + V W+ + K+ LQEWA PEY+V RSGPDH +FT Sbjct: 130 GFKKSRELVHVLWRPALESGAGESKHPKSALQEWAAGNRRKPPEYEVVERSGPDHAAQFT 189 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V V + + A SK AE+ AA + +++ G Sbjct: 190 VKVSVHKVGEATATAGSKGEAERAAAKKFMEKFG 223 >gi|77457221|ref|YP_346726.1| ribonuclease III [Pseudomonas fluorescens Pf0-1] gi|90101638|sp|Q3KHL9|RNC_PSEPF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|77381224|gb|ABA72737.1| ribonuclease III [Pseudomonas fluorescens Pf0-1] Length = 229 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 77/217 (35%), Positives = 111/217 (51%), Gaps = 10/217 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF+ Sbjct: 1 MSVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFD 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+ Sbjct: 58 RFPLAREGQLSRLRARLVKGETLAVLARGFDLGDYLRLGSGELKSGGFRRESILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD G+EVA V + +D KT LQE+ ++ P Y+V Sbjct: 118 LIGAIYLDAGMEVARERVLAWLAGEFEGLTLVDTNKDPKTRLQEFLQSRGCELPRYEVVD 177 Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213 G H F V E+ + ++G S+R AEQ Sbjct: 178 IQGEPHCRTFFVECEVVLLNEK--SRGQGVSRRIAEQ 212 >gi|268593250|ref|ZP_06127471.1| ribonuclease III [Providencia rettgeri DSM 1131] gi|291311145|gb|EFE51598.1| ribonuclease III [Providencia rettgeri DSM 1131] Length = 226 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPSLIERLQRKLGYQFKQNELLIQALTHRSAS---SKHNERLEFLGDSILSFVIANDLY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIERIILDWYQSRLVEISPGDKQKDPKTRLQEYLQGRHLPLPNYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SG+ P G+ S+R Sbjct: 178 QVKGEAHDQEFTIHCQVSGIDQPINGVGSSRRK 210 >gi|228477722|ref|ZP_04062351.1| ribonuclease III [Streptococcus salivarius SK126] gi|228250611|gb|EEK09822.1| ribonuclease III [Streptococcus salivarius SK126] Length = 229 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 65/212 (30%), Positives = 101/212 (47%), Gaps = 6/212 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ L LE+ G F+ + LLE A TH+S ++ ++ ERLEFLGD L L+IS Sbjct: 1 MNQLEQK-LEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + + EGE+S +++V E+ + + +IR+ K +I Sbjct: 60 VYLYKRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD G+ F+++ + K + D KT LQE V Y Sbjct: 120 DLWEAFLGALYLDQGLPAVEKFLNQVMIPQVEKGNFDRVTDYKTALQERLQVNGTVDITY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 V SGP H FT+ V + G + G+ S Sbjct: 180 TVIDESGPAHAKEFTMQVAVDGKELSTGLGKS 211 >gi|319941434|ref|ZP_08015762.1| ribonuclease III [Sutterella wadsworthensis 3_1_45B] gi|319805054|gb|EFW01884.1| ribonuclease III [Sutterella wadsworthensis 3_1_45B] Length = 226 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 6/209 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L LE+RIGY F ++ LL +A+TH S + + ERLEFLGD +L +I LF Sbjct: 2 LSLEALEERIGYVFQDKKLLRRAVTHRSFAQEH---NERLEFLGDSVLNCVIGYALFLRD 58 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EGELS +LV +T ++A ++D++SF+ + K + SI AD +E++ Sbjct: 59 KHFNEGELSRVRANLVCEKTLHEIALKIDVSSFLYMGEGEVKTGGAHRASILADAMEAIF 118 Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++ + G + A + K + + +D KT LQE PEY + + Sbjct: 119 GAVFREAGFDTAQRVILKLYDPILTGLTPEQMSKDPKTRLQELLQGDHLPRPEYAIVAAT 178 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKR 209 G H+ RF I L +G S+R Sbjct: 179 GAAHERRFECECRIERLKIVTRGTATSRR 207 >gi|320104374|ref|YP_004179965.1| RNAse III [Isosphaera pallida ATCC 43644] gi|319751656|gb|ADV63416.1| RNAse III [Isosphaera pallida ATCC 43644] Length = 238 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 1 MSALRYSTL----EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56 MS S L E+ IG++F +R LL ALTHSS + S ERLEFLGD +LG+++ Sbjct: 1 MSEPDDSELLASCERVIGHSFQDRGLLRAALTHSSRAVHPLASNERLEFLGDSVLGMIVC 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF+ F AKEG+L+ + +VS +TC+++AR+L L +++ + + + S A Sbjct: 61 DTLFHLFPEAKEGDLTRIKSVVVSRQTCTKIARKLGLQNYLLLGKGMGPSSQA-PASTLA 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPE 174 +V ES++ A+YLD G E A FV K+ + + + K++LQ++A G TP Sbjct: 120 NVFESVVGAIYLDSGFEAARRFVLNNLLPEIESSKNEESQGNYKSQLQQYAQKNHGTTPT 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y + GPDH F ++ I +K+ AEQ AA L Sbjct: 180 YHLLEEKGPDHRKCFKILARIGSHQFPPAWGQTKKDAEQRAAQNAL 225 >gi|312115946|ref|YP_004013542.1| ribonuclease III [Rhodomicrobium vannielii ATCC 17100] gi|311221075|gb|ADP72443.1| ribonuclease III [Rhodomicrobium vannielii ATCC 17100] Length = 236 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 86/207 (41%), Positives = 114/207 (55%), Gaps = 1/207 (0%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLF 60 R LE +GY F R LL +ALTHSS ERLEFLGDR+LGL I+ LLF Sbjct: 4 KKPRVEELEASLGYKFQERGLLAEALTHSSARSEKGGRDNERLEFLGDRVLGLSIAALLF 63 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+E EL+ FN+LV TC++VA +L+L + ++ + I AD VE Sbjct: 64 ERFPKAREVELARHFNALVCKTTCAEVALKLELGPHLVMAPSEARSGGRKKDVILADAVE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +L+ A+ +DGG A T V ++W+ S DAKT LQE+A ++ P+Y R Sbjct: 124 ALLGAISVDGGFAAAETVVHRHWEPFIASSEPPAPDAKTALQEFAQSQKRGLPDYHEVER 183 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207 SG DH P FTV V + GL P +G S Sbjct: 184 SGADHAPNFTVEVRVQGLKPERGTGSS 210 >gi|256077669|ref|XP_002575124.1| ribonuclease III [Schistosoma mansoni] gi|238660352|emb|CAZ31357.1| ribonuclease III, putative [Schistosoma mansoni] Length = 1577 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 11/228 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + TLE +G F + +L +A+T + +RLEFLGD +L + + LF H Sbjct: 1107 KLCTLEDTLGIKFKHLRVLARAMTIRKTGFNFYTLGDNQRLEFLGDSLLKYVSTDYLFRH 1166 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT--SIQADVVE 120 F EG LS+ NSLV+ T + V EL L ++ + S +AD++E Sbjct: 1167 FPRHHEGHLSLLKNSLVNKYTQASVCSELGLEHYVIHRNKNDNCNNSQNQNVKYRADLLE 1226 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR-------ALKSGKFRRDAKTELQEWAHAKFGVTP 173 + I AL++D + F + R + + + L + + Sbjct: 1227 AFIGALFVDKDLAWVERFCQICFWPRLVEFILKQEWNDAKSKLQQCCLTFRSLNEDPEIA 1286 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YKV SGP + + V V G A G S + A+ AA + L+ Sbjct: 1287 HYKVLEHSGPTNQRVYRVGVYFRGQRLATGEGRSVQQAQMEAAKKALE 1334 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 56/178 (31%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE-------------------RLE-- 44 +LE R+GY F ++SLL ++LTH S + + + +LE Sbjct: 875 LESLENRLGYTFNDKSLLHQSLTHPSYRRTNFGTNQDHFQNSLVSCGPRILEYGDKLELY 934 Query: 45 -----------------------------------FLGDRILGLLISTLLFNHFDSAKEG 69 FLGD ++ ++ S LF F EG Sbjct: 935 KAWRKKGLTKMIQVMSFLPKMHEERSNIYGNERLEFLGDAVVEVISSIHLFFMFPELSEG 994 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 L ++V + +++A L + ++ + + S ++D E+L+AA+ Sbjct: 995 HLDAYRQAIVQNQHLAELAVRLGIHKYLLYTHSVDFCYDSTFIYARSDAFEALMAAIT 1052 >gi|295396031|ref|ZP_06806215.1| ribonuclease III [Brevibacterium mcbrellneri ATCC 49030] gi|294971119|gb|EFG47010.1| ribonuclease III [Brevibacterium mcbrellneri ATCC 49030] Length = 230 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 4/220 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 S L KR+G + L +LTH S + + ERLEFLGD +L L + LF+H Sbjct: 2 SELNKRLGVDI-DPETLRLSLTHRSYAFENGGIPTNERLEFLGDAVLQLKTTKWLFDHNT 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG L+ +++V++ + VAR + F+ + + + SI AD VE++I Sbjct: 61 EASEGRLAKMRSAVVNSRALAGVARTYGIGEFLLLGNGEERTGGRDKDSILADTVEAIIG 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A Y+ G + A V++ + + A A + + GP Sbjct: 121 ACYVSQGPDAANALVERLVGPLLEDAVNLGAGMDYKTTLQEAAADLSLGAVHYDVTGEGP 180 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH FT V + A G SK+ AE VAA +K+ Sbjct: 181 DHARVFTAVAYLGETRWASGEGTSKKNAELVAAEIAVKKI 220 >gi|312194940|ref|YP_004015001.1| ribonuclease III [Frankia sp. EuI1c] gi|311226276|gb|ADP79131.1| ribonuclease III [Frankia sp. EuI1c] Length = 319 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 101/207 (48%), Gaps = 8/207 (3%) Query: 20 RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 LL++ALTH S ++ + ERLEFLGD +L L+++ L+N EG L+ + S Sbjct: 43 PDLLDRALTHRSYAYENGGLPTNERLEFLGDAVLQLVVTDALYNRHPDLPEGALAKQRAS 102 Query: 78 LVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 +V++ + VAR + ++ + SI AD +E+LI A+YL+ G+EV Sbjct: 103 VVNSRALADVARVIGPKGIGPYLLLGKGEETTGGRDKASILADTLEALIGAVYLELGLEV 162 Query: 135 AGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 A V +Y+ D KT LQE P+Y VT SGPDH RFT Sbjct: 163 AAQLVHRYFDPLLDEAAGRGAGLDWKTSLQERTAELGMGPPDYVVTD-SGPDHAKRFTAR 221 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEV 219 IS +G SK+ AEQ AA Sbjct: 222 ARISDRIYGEGEGGSKKEAEQRAAERA 248 >gi|256077671|ref|XP_002575125.1| ribonuclease III [Schistosoma mansoni] gi|238660353|emb|CAZ31358.1| ribonuclease III, putative [Schistosoma mansoni] Length = 1531 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 11/228 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + TLE +G F + +L +A+T + +RLEFLGD +L + + LF H Sbjct: 1061 KLCTLEDTLGIKFKHLRVLARAMTIRKTGFNFYTLGDNQRLEFLGDSLLKYVSTDYLFRH 1120 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT--SIQADVVE 120 F EG LS+ NSLV+ T + V EL L ++ + S +AD++E Sbjct: 1121 FPRHHEGHLSLLKNSLVNKYTQASVCSELGLEHYVIHRNKNDNCNNSQNQNVKYRADLLE 1180 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR-------ALKSGKFRRDAKTELQEWAHAKFGVTP 173 + I AL++D + F + R + + + L + + Sbjct: 1181 AFIGALFVDKDLAWVERFCQICFWPRLVEFILKQEWNDAKSKLQQCCLTFRSLNEDPEIA 1240 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YKV SGP + + V V G A G S + A+ AA + L+ Sbjct: 1241 HYKVLEHSGPTNQRVYRVGVYFRGQRLATGEGRSVQQAQMEAAKKALE 1288 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 56/178 (31%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE-------------------RLE-- 44 +LE R+GY F ++SLL ++LTH S + + + +LE Sbjct: 829 LESLENRLGYTFNDKSLLHQSLTHPSYRRTNFGTNQDHFQNSLVSCGPRILEYGDKLELY 888 Query: 45 -----------------------------------FLGDRILGLLISTLLFNHFDSAKEG 69 FLGD ++ ++ S LF F EG Sbjct: 889 KAWRKKGLTKMIQVMSFLPKMHEERSNIYGNERLEFLGDAVVEVISSIHLFFMFPELSEG 948 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 L ++V + +++A L + ++ + + S ++D E+L+AA+ Sbjct: 949 HLDAYRQAIVQNQHLAELAVRLGIHKYLLYTHSVDFCYDSTFIYARSDAFEALMAAIT 1006 >gi|37527216|ref|NP_930560.1| ribonuclease III [Photorhabdus luminescens subsp. laumondii TTO1] gi|81418780|sp|Q7N1X5|RNC_PHOLL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|36786650|emb|CAE15714.1| ribonuclease III (RNase III) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 226 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 109/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFDQYDLLIQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGYRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A++LD I+ + + + G ++D KT LQE+ P Y V Sbjct: 118 ALIGAIFLDSDIQSIERIILSWYETRLNEISPGDKQKDPKTRLQEYLQGHHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G HD FT+ ++SG+ P +G S+R Sbjct: 178 MVRGEAHDQEFTIHCQVSGIEQPVKGTGSSRRK 210 >gi|325108661|ref|YP_004269729.1| RNAse III [Planctomyces brasiliensis DSM 5305] gi|324968929|gb|ADY59707.1| RNAse III [Planctomyces brasiliensis DSM 5305] Length = 335 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 112/213 (52%), Gaps = 3/213 (1%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E+ +GY F +++ L K+LTH+SI+ + +S ER+EFLGD +LG ++ LF F +EG Sbjct: 19 EQALGYQFQDKNWLLKSLTHASIAQTRLQSNERMEFLGDAVLGAVVCDRLFALFPEDEEG 78 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +++ + +VS C+Q+A L L F+++ L S+ A V ES+IAA+YLD Sbjct: 79 QMTQMKSEVVSRTACAQLALALGLDRFVQMGKGL-HQSREIPLSVLAGVFESVIAAIYLD 137 Query: 130 GGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG + A F+ + R++K++LQ+ TP Y++ SGPDH Sbjct: 138 GGYKAAFDFISGKLEDLIQHAAETAHIRNSKSQLQQLTQRTRSQTPTYELLQESGPDHSK 197 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F V + +K+ AEQ AA L Sbjct: 198 CFLVQAIVGPDTYPPAWGSNKKEAEQKAALNAL 230 >gi|217977175|ref|YP_002361322.1| Ribonuclease III [Methylocella silvestris BL2] gi|254807894|sp|B8EK13|RNC_METSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|217502551|gb|ACK49960.1| Ribonuclease III [Methylocella silvestris BL2] Length = 235 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 90/209 (43%), Positives = 126/209 (60%), Gaps = 1/209 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S LE RIG+ F+ L+E ALTH S + + SY+RLEFLGDR+LG++++ +L+ F Sbjct: 6 DLSALEARIGHRFSAADLIEAALTHVSAAQGKRVSYQRLEFLGDRVLGVVVANMLYGAFP 65 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EGELS R LV E+C++VA E + +++RV + S +I DV ES+I Sbjct: 66 DADEGELSRRLADLVRKESCAEVALEWGVEAYVRVGESEK-QNASVNRAILGDVCESIIG 124 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A++LDGG A V + ++ R + RD KT LQEWA A+ P Y+ T R+GPD Sbjct: 125 AVFLDGGFAPAQRVVTQAFEPRMRSPRRPLRDPKTTLQEWAQARGLPPPSYRETARTGPD 184 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 H P FT+ VEI+G A+ +KR AEQ Sbjct: 185 HAPEFTISVEIAGFQQAEARGFAKRLAEQ 213 >gi|294084100|ref|YP_003550858.1| Ribonuclease III [Candidatus Puniceispirillum marinum IMCC1322] gi|292663673|gb|ADE38774.1| Ribonuclease III [Candidatus Puniceispirillum marinum IMCC1322] Length = 230 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 121/223 (54%), Gaps = 4/223 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ L +R+ + F ++S+L +ALTH+S + +S ERLEFLGDR+LGL+++ + Sbjct: 1 MKSVDLKPLAERLAHKFNDQSVLVRALTHASFA-GPTKSNERLEFLGDRVLGLVLADFFY 59 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+LS+R ++ +V REL+LA FI V + + S+ AD VE Sbjct: 60 GQCPDEDEGKLSLRLHADARQSKLVEVGRELELARFISVQNGMALA---ENESVIADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 SLIAA YLDGG EVA F+ YW +DAK+ LQE + P Y++ + Sbjct: 117 SLIAAHYLDGGFEVARRFILAYWALDTAAPAGTDKDAKSRLQELVMKQGLALPHYRLISK 176 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH P V + G +++ AEQ AAA ++ + Sbjct: 177 SGPDHAPEMIYEVSVEGYDSIVASASNRKLAEQQAAALMVAQI 219 >gi|326576294|gb|EGE26209.1| ribonuclease III [Moraxella catarrhalis CO72] Length = 262 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 106/224 (47%), Gaps = 10/224 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L ++GY F + SLL +ALTH S ++SYERLEFLGD +L +I+ LF + E Sbjct: 35 LYAKLGYTFKDVSLLCRALTHRSY--DPKKSYERLEFLGDALLSSIITKALFAQYPKHDE 92 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ +LV ET Q+A L+L+ ++ + RK SI AD VE+LIAA+YL Sbjct: 93 GKLTRMRAALVRQETLVQIADHLELSRYLILGVGERKGGGRHRASILADAVEALIAAVYL 152 Query: 129 DGGIEVAGTFVDKYWKQRALK------SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 D + + + +DAK+ LQE P Y++ G Sbjct: 153 DNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQTLG 212 Query: 183 PDHDPRFTVV--VEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F V + G+ P S+R AEQ A ++ + Sbjct: 213 SAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQLN 256 >gi|326561464|gb|EGE11814.1| ribonuclease III [Moraxella catarrhalis 46P47B1] gi|326562236|gb|EGE12564.1| ribonuclease III [Moraxella catarrhalis 7169] gi|326567190|gb|EGE17312.1| ribonuclease III [Moraxella catarrhalis BC1] gi|326568472|gb|EGE18552.1| ribonuclease III [Moraxella catarrhalis BC7] Length = 262 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 106/224 (47%), Gaps = 10/224 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L ++GY F + SLL +ALTH S ++SYERLEFLGD +L +I+ LF + E Sbjct: 35 LYAKLGYTFKDVSLLCRALTHRSY--DPKKSYERLEFLGDALLSSIITKALFAQYPKHDE 92 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ +LV ET Q+A L+L+ ++ + RK SI AD VE+LIAA+YL Sbjct: 93 GKLTRMRAALVRQETLVQIADHLELSRYLILGVGERKGGGRHRASILADAVEALIAAVYL 152 Query: 129 DGGIEVAGTFVDKYWKQRALK------SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 D + + + +DAK+ LQE P Y++ G Sbjct: 153 DNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQTLG 212 Query: 183 PDHDPRFTVV--VEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F V + G+ P S+R AEQ A ++ + Sbjct: 213 SAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQLN 256 >gi|261855986|ref|YP_003263269.1| ribonuclease III [Halothiobacillus neapolitanus c2] gi|261836455|gb|ACX96222.1| ribonuclease III [Halothiobacillus neapolitanus c2] Length = 243 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 110/220 (50%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L + IG FA+ LLE AL H S + + ERLEFLGD +L L+I+ L+ A Sbjct: 15 EKLAQHIGITFASPELLEMALRHRSAGN---MNNERLEFLGDAVLNLVIANQLYTMHSKA 71 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV E+ + +ARELDL S++ + K SI AD +E+ I A+ Sbjct: 72 TEGELSRWRASLVREESLAVIARELDLGSYLVLGPGELKSGGFRRDSILADALEATIGAV 131 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G +VA + + + +++ +D KT LQEW P Y+VT G Sbjct: 132 YLDQGFDVAQSLLVRLFERMLQDLPDAASLKDPKTRLQEWLQGSKRELPSYEVTTIRGQA 191 Query: 185 HDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 H F V +S A G S+R AEQ AA + + Sbjct: 192 HKQVFEVTCTLSDTQQTAVGRGSSRRKAEQAAAESMFEAL 231 >gi|330502445|ref|YP_004379314.1| ribonuclease III [Pseudomonas mendocina NK-01] gi|328916731|gb|AEB57562.1| ribonuclease III [Pseudomonas mendocina NK-01] Length = 229 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 75/218 (34%), Positives = 107/218 (49%), Gaps = 11/218 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS S LE+++GY+F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSP-NLSRLERKLGYSFKDQDLMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+EG+LS LV ET + +AR +L ++R+ S K SI AD +E Sbjct: 57 ERFPQAREGQLSRLRARLVKGETLAVLARGFELGEYLRLGSGELKSGGFRRESILADALE 116 Query: 121 SLIAALYLDGGIE--VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD G+E + L +D KT LQE+ ++ P Y+V Sbjct: 117 ALIGAIYLDAGMEAARERVLDWLTGELDGLTLVDTNKDPKTRLQEFLQSRACELPRYEVV 176 Query: 179 FRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213 G H F V ++ + G S+R AEQ Sbjct: 177 DVQGEPHCRTFMVECQVALLNEKTL--GQGGSRRIAEQ 212 >gi|295836307|ref|ZP_06823240.1| ribonuclease III [Streptomyces sp. SPB74] gi|295825949|gb|EFG64564.1| ribonuclease III [Streptomyces sp. SPB74] Length = 280 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 69/212 (32%), Positives = 108/212 (50%), Gaps = 4/212 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 49 LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRAHPDL 107 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V+R LDL +FIR+ SI AD +E++I A+ Sbjct: 108 PEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 167 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ AG V + + KS + + A G+ + GPDH Sbjct: 168 YLDQGLDKAGELVHRLFDPLIEKSAELGAGLDWKTSLQELTAVEGLGVPEYLVTEEGPDH 227 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + FT + G++ G SK+ AEQ AA Sbjct: 228 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 259 >gi|238920905|ref|YP_002934420.1| ribonuclease III [Edwardsiella ictaluri 93-146] gi|259491900|sp|C5B8Y2|RNC_EDWI9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238870474|gb|ACR70185.1| ribonuclease III, putative [Edwardsiella ictaluri 93-146] Length = 226 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFRQHDLLMQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIERLILDWYRSRLEEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210 G HD FT+ ++SGL+ P G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSAPVVGVGSSRRK 210 >gi|218259360|ref|ZP_03475110.1| hypothetical protein PRABACTJOHN_00767 [Parabacteroides johnsonii DSM 18315] gi|218225152|gb|EEC97802.1| hypothetical protein PRABACTJOHN_00767 [Parabacteroides johnsonii DSM 18315] Length = 286 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 5/227 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M+ YS+L K +G+ N L E+A H S S + + ERLEFLGD IL +++ Sbjct: 15 MNKEPYSSLYKILGFYPDNIHLYEQAFHHKSSSIESSDGRWLNNERLEFLGDAILDAVVA 74 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++FNHF + +EG L+ + +V +T ++VA EL L + S+ + + Sbjct: 75 DIVFNHFQNKREGFLTNTRSKIVQRDTLNRVAVELGLEKMVVYSAKVNSHNNYMYGNALE 134 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 ++ ++ + + K + + K K+ L EW+ Sbjct: 135 ALIGAIYLDQGYEVCYNFIQNVLIKKYVNLETIARKEVNF-KSSLIEWSQKNKLEISFDL 193 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + D +P F V +S G+ SK+ ++Q AA +K+ Sbjct: 194 IESFTDNDGNPVFQTGVTLSDTQIGVGIGYSKKESQQSAAKMAIKKL 240 >gi|46201860|ref|ZP_00208277.1| COG0571: dsRNA-specific ribonuclease [Magnetospirillum magnetotacticum MS-1] Length = 230 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 80/211 (37%), Positives = 113/211 (53%), Gaps = 4/211 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 + L +G+AFA LL +ALTH S + + YERLEFLGDR+LGL+++ +LF Sbjct: 6 ADLPALLGHAFARPELLSQALTHPSTQQHRRSQGSDPYERLEFLGDRVLGLVVAEMLFLR 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ R +LV E +++A E+ L + ++ I AD E++ Sbjct: 66 FPDEAEGALARRHAALVRREAVARIANEIGLGRHLVLAKGESDAGGRTNPGILADACEAV 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I ALY D G VA FV W+ ++ +DAKT LQEWA + P YK+ + G Sbjct: 126 IGALYADAGFAVAAAFVRSRWEPMMEEALAPPKDAKTGLQEWAQGRGKPLPAYKMLGQEG 185 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 P H+P F + V + G+ A G SKR AEQ Sbjct: 186 PPHEPTFLMEVSVEGVGSAVGRGASKRVAEQ 216 >gi|332977456|gb|EGK14231.1| ribonuclease III [Psychrobacter sp. 1501(2011)] Length = 273 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 7/224 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++L+K +GY F + SL + ALTH S + +YERLEFLGD +LG++I L+ + + Sbjct: 40 LASLQKVLGYTFKDTSLAKLALTHRSF--DGKINYERLEFLGDALLGMIIGEALYYQYPN 97 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG L+ +LV E+ VA++L+L+S + + RK SI AD VESLI A Sbjct: 98 QNEGRLTRMRATLVRQESLVIVAQKLNLSSHLILGVGERKGGGRERASILADTVESLIGA 157 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD W + + +R DAK+ LQEW P+Y++ G Sbjct: 158 IYLDSQSVDVVKACVLDWFAELINNVNDQRVLKDAKSRLQEWLQGHKYELPKYELLETQG 217 Query: 183 PDHDPRFTV--VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F V VE+ P S+R AEQ A +++ + Sbjct: 218 NAPNQIFIVRCEVEVPHSTPIIESGESRRIAEQKTAEKMINQLN 261 >gi|134095253|ref|YP_001100328.1| RNase III, ds RNA (partial match) [Herminiimonas arsenicoxydans] gi|133739156|emb|CAL62205.1| Ribonuclease III [Herminiimonas arsenicoxydans] Length = 328 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + + L+ R+G+ F + L+++ALTH S S + ERLEFLGD IL ++++LLF+ + Sbjct: 1 MDVTLLQNRLGHTFKDAVLMQQALTHRSHSSVH---NERLEFLGDSILNCVVASLLFDRY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+L+ F+R+ K SI AD +E+L Sbjct: 58 SKIDEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G A + + +DAKT LQE+ K P+Y V Sbjct: 118 GAIFLDAGFNAARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H+ F + + L G S+RA EQ AA L+ Sbjct: 178 GAAHNQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALE 218 >gi|259417917|ref|ZP_05741836.1| ribonuclease III [Silicibacter sp. TrichCH4B] gi|259346823|gb|EEW58637.1| ribonuclease III [Silicibacter sp. TrichCH4B] Length = 228 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 76/210 (36%), Positives = 117/210 (55%), Gaps = 1/210 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + + R+G+ F++ LL +ALTH S+S ++ +RLEFLGDR+LGL+++T L Sbjct: 1 MKLSRDILAFQARLGHEFSSPELLIRALTHPSVSSPNRQDNQRLEFLGDRVLGLVMATAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 H A EG+L+ RFN+LV E C+ VAR++DL + +++ ++ D + Sbjct: 61 LEHDKHATEGQLAPRFNALVRKEACADVARQIDLGAVLKLGRSEMLSGGRRKQALLGDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+Y D G E A + + W +R RD KT LQE+ A+ P Y + Sbjct: 121 EAVIAAVYKDAGFEAAQNVILRLWGKRVGTVEDDARDPKTALQEFVQARRQPPPAYVLIA 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 R+GPDH+P FT+ + Q SKR Sbjct: 181 RTGPDHEPVFTIAARLEDGTEEQATAGSKR 210 >gi|322373156|ref|ZP_08047692.1| ribonuclease III [Streptococcus sp. C150] gi|321278198|gb|EFX55267.1| ribonuclease III [Streptococcus sp. C150] Length = 229 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 68/212 (32%), Positives = 103/212 (48%), Gaps = 6/212 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ L LE+ G F+ + LLE A TH+S ++ ++ ERLEFLGD L L+IS Sbjct: 1 MNQLEQK-LEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+N + + EGE+S +++V E+ + + FIR+ K +I Sbjct: 60 VYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQFIRLGKGEEKSGGRERATILG 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ + ALYLD G+ F++K + + + D KTELQE V Y Sbjct: 120 DLWEAFLGALYLDQGLPAVEKFLNKVMIPKVEEGNFDRVTDYKTELQERLQVNGTVDITY 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 V SGP H FT+ V + G + G+ S Sbjct: 180 TVIEESGPAHAKEFTMQVAVDGKELSTGLGKS 211 >gi|242076428|ref|XP_002448150.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor] gi|241939333|gb|EES12478.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor] Length = 698 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 98/245 (40%), Gaps = 24/245 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + S LE+ IGY F ++ LL +A H S + Y+R+EFLGD +L L+++ L+ Sbjct: 247 MNYMNISELEELIGYTFKHKGLLLQAFVHPSFNKHSGGCYQRMEFLGDAVLDYLMASYLY 306 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD------------------ 102 + + K G+L+ + ++ + + VA + + ++ S Sbjct: 307 SAYPDLKPGQLTDLKSLALNNNSFAYVAVKKSIHKYLIKDSKSLTAAINKFQNYVNLSSS 366 Query: 103 -LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKTE 160 + D+VES + A+ LD G + + + L D E Sbjct: 367 EKDLLEEPTCPKVLGDIVESCVGAVLLDSGFNLNHVWKLMLMLLKPILSFCGMHIDPMRE 426 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEV 219 L+E K T +G H V V I G + + + + A +VAA E Sbjct: 427 LREICQYNGFELGLPKPTEDNGEFHVK---VEVNIDGKMISCTAANRNSKDARKVAAQEA 483 Query: 220 LKREG 224 L + Sbjct: 484 LLKLK 488 Score = 38.0 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + +ALT S ERLE LGD L ++ F ++ EG+L+ R + +VS Sbjct: 65 ILEALTTERCLERI--SLERLEVLGDAFLKYVVGRHNFISYEGLDEGQLTRRRSDIVSNS 122 Query: 83 TCSQVARELDLASFIRVSS 101 +++ +L +IR Sbjct: 123 NLYELSIRRNLQVYIRDQH 141 >gi|194366747|ref|YP_002029357.1| ribonuclease III [Stenotrophomonas maltophilia R551-3] gi|194349551|gb|ACF52674.1| Ribonuclease III [Stenotrophomonas maltophilia R551-3] Length = 226 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 74/217 (34%), Positives = 112/217 (51%), Gaps = 7/217 (3%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 IG+AF++ +LL++ALTH S ERLEFLGD I+ ++ + L+ + A EG Sbjct: 10 DLIGHAFSDPALLKQALTHRSAG---APHNERLEFLGDSIVNMMAAEALYRRWPKADEGA 66 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 ++ LV + + R L+L + + K SI AD VE+++AA+YLD Sbjct: 67 MTRARAELVREGALAVIGRTLELGERLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDA 126 Query: 131 GIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G E V ++ + SG+ +D KT LQEW A+ P+Y++ SG DH Sbjct: 127 GFEACRAVVLPWFSASIEALPASGRPEKDPKTRLQEWLQARQKALPQYELVSESGDDHAK 186 Query: 188 RFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V ++ A +G S+R AEQ AAA VL++ Sbjct: 187 HFRVRCIVADPAASTEGEGASRRLAEQQAAAAVLEQL 223 >gi|126728500|ref|ZP_01744316.1| Ribonuclease III [Sagittula stellata E-37] gi|126711465|gb|EBA10515.1| Ribonuclease III [Sagittula stellata E-37] Length = 225 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 76/209 (36%), Positives = 121/209 (57%), Gaps = 1/209 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + LE ++G+ F +++LL +A+TH+S+S +E +RLEFLGDR+LGL+++ L Sbjct: 1 MKVSAEIKALEDKLGHTFRDKALLRRAVTHASMSGPGREDNQRLEFLGDRVLGLVMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 H +A EG L+ RFN+LV ETC++VAR + + +++ + ++ D + Sbjct: 61 LAHDRNASEGLLAPRFNALVRKETCAEVARTIGVGDALKLGRSEQMSGGRRKQALLGDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+YLDGG +VA + + W + +DAKT LQEWA + P Y Sbjct: 121 EAVIAAVYLDGGFDVAQDMILRLWAPLIASVEEDAKDAKTTLQEWAQGRGMTPPSYTEVE 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 RSGPDH P FT+ ++ A+ +K Sbjct: 181 RSGPDHAPVFTIEARLATGETARATAGNK 209 >gi|313147996|ref|ZP_07810189.1| ribonuclease III [Bacteroides fragilis 3_1_12] gi|313136763|gb|EFR54123.1| ribonuclease III [Bacteroides fragilis 3_1_12] Length = 294 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 102/223 (45%), Gaps = 11/223 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +G+ N L E+AL H S + + ERLEFLGD IL ++ +++ HF+ Sbjct: 27 FYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYQHFE 86 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L I+ S+ + + + E+ I Sbjct: 87 GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHN----SYMYGNAFEAFIG 142 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G E F+ K + + K + K++L EW+ + Sbjct: 143 AIYLDRGYECCKQFMQKKIIEPYIDLDKLSRKEVNFKSKLIEWSQKNKMEVSFELIEQFL 202 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +++P F V I G+ G SK+ ++Q AA LK+ Sbjct: 203 DKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMALKKIK 245 >gi|242021933|ref|XP_002431397.1| ribonuclease III, putative [Pediculus humanus corporis] gi|212516673|gb|EEB18659.1| ribonuclease III, putative [Pediculus humanus corporis] Length = 1410 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 14/227 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E+ G F + LL +A T S ++ S +RLEFLGD +L L+ S L+ + Sbjct: 1150 NLTKFEEATGIEFKHIRLLARAFTDRSVGYTNLTLGSNQRLEFLGDSVLQLIASEYLYKY 1209 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T S V +L + + ++ +AD++E+ Sbjct: 1210 FPEHHEGHLSLLRSSLVNNKTQSVVCDDLGMTQYAVYAN----PKVELKVKDRADLLEAF 1265 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA------HAKFGVTPE 174 + ALY+D G+++ F D + + + D K++LQ+ P Sbjct: 1266 LGALYVDNGLDICRVFCDVCFFPRLQIFIMNQDWNDPKSKLQQCCLTLRTMDNVEPDIPI 1325 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 YKV GP + +TV V A+ S + AE AA + ++ Sbjct: 1326 YKVVECKGPTNTRVYTVAVYFRNKRLAKATGHSIQQAEMNAAQKAME 1372 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE++I Y F N+ LL+ ALTH S ++ + Sbjct: 922 LEEKINYKFKNKFLLQLALTHPSYRENFGTN 952 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 56/128 (43%) Query: 33 SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD 92 + S ERLEFLGD ++ + S LF+ F +EG L+ +LV + S +A++L+ Sbjct: 1001 TQSNIYHNERLEFLGDAVVEFITSIHLFHIFRDLEEGGLATYRAALVQNQHLSVLAKKLN 1060 Query: 93 LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 L F+ + + A+ E+L+ AL+LDGGIE A Sbjct: 1061 LDEFMLYAHGSDLCHDLELKHAMANCFEALMGALFLDGGIESADKVFGMTLYGDDEDCSD 1120 Query: 153 FRRDAKTE 160 + Sbjct: 1121 VWFNYPPH 1128 >gi|261820519|ref|YP_003258625.1| ribonuclease III [Pectobacterium wasabiae WPP163] gi|261604532|gb|ACX87018.1| ribonuclease III [Pectobacterium wasabiae WPP163] Length = 226 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 69/213 (32%), Positives = 106/213 (49%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQRKLGYTFQQYELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDILNIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRA 210 G HD FT+ ++SG + + G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRK 210 >gi|240169618|ref|ZP_04748277.1| ribonuclease III [Mycobacterium kansasii ATCC 12478] Length = 241 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 115/230 (50%), Gaps = 10/230 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M+A R +L +G ++ LL ALTH S ++ + ERLEFLGD +LGL I+ Sbjct: 1 MTASR-QSLLDALGVDLSD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDE 58 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQ 115 L++ EG+L+ S+V+ + + VAR L L I + + +SI Sbjct: 59 LYHRHPDRSEGDLAKLRASVVNTQALADVARNLSDNGLGVHILLGRGEANTGGADKSSIL 118 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTP 173 AD +ESL+ A+YL GIEV+ + K + + D KT LQE A+ TP Sbjct: 119 ADGMESLLGAIYLQHGIEVSRKVILKLFGPLLDAAATLGAGLDWKTSLQELTAARGLGTP 178 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y VT +GPDHD FT VV + GM SK+ AEQ AA+ K Sbjct: 179 SYLVTS-TGPDHDKEFTAVVVVMDAEYGSGMGRSKKEAEQKAASAAYKAL 227 >gi|187735104|ref|YP_001877216.1| Ribonuclease III [Akkermansia muciniphila ATCC BAA-835] gi|187425156|gb|ACD04435.1| Ribonuclease III [Akkermansia muciniphila ATCC BAA-835] Length = 231 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 64/211 (30%), Positives = 91/211 (43%), Gaps = 4/211 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFN 61 + ++ LE ++GY F N LL +ALTH S + +YERLEFLGD IL L ++ L++ Sbjct: 1 MNHTALEDKLGYRFNNPDLLVQALTHPSTDSKPETRRAYERLEFLGDAILQLAVTQYLYH 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H + EGEL+ VS + L L I + + SI A+ ES Sbjct: 61 HMPQSPEGELTQLRARTVSRANLGKYGFILGLDKHIALGKGEERAGGRGKNSIIANTFES 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + A+ LD E A + + + S + K ELQ TP Y+ Sbjct: 121 VFGAMSLDSDYETAKAVALRVLHEALDSAASHPKEINPKGELQAILQDILPETPSYETEE 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + D + RF V G A G SKR Sbjct: 181 KGPRDAENRFESRVFWHGHAIGAGSGASKRK 211 >gi|119358263|ref|YP_912907.1| ribonuclease III [Chlorobium phaeobacteroides DSM 266] gi|119355612|gb|ABL66483.1| RNAse III [Chlorobium phaeobacteroides DSM 266] Length = 273 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 75/213 (35%), Positives = 109/213 (51%), Gaps = 8/213 (3%) Query: 19 NRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L + ALTH S+ H Y+ +S +RLEFLGD +LGLLIS LF +F ++EGELS Sbjct: 54 NLFLYQTALTHRSVVHDYEHATPAVQSNQRLEFLGDAVLGLLISDYLFRNFPDSREGELS 113 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +V+ ++ + AR + L + + K+ S AD ESLI A+YLD G+ Sbjct: 114 SNRAKIVNRKSLAGFARSIGLGKHLIIGESADKNKIRSSESALADAFESLIGAIYLDKGL 173 Query: 133 EVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + A FV K + A + K++L E+ + P YKV G +H+ FT Sbjct: 174 DAAFAFVMKQITEHADFRSIVAAEHNYKSQLIEYTQSHHLPPPVYKVIAEEGAEHEKTFT 233 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + V + QG K+ AEQ+AA E + R Sbjct: 234 IEVSVDDRQMGQGTAPRKKDAEQLAAREAIDRI 266 >gi|255010202|ref|ZP_05282328.1| ribonuclease III [Bacteroides fragilis 3_1_12] Length = 290 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 102/223 (45%), Gaps = 11/223 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +G+ N L E+AL H S + + ERLEFLGD IL ++ +++ HF+ Sbjct: 23 FYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYQHFE 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L I+ S+ + + + E+ I Sbjct: 83 GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHN----SYMYGNAFEAFIG 138 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G E F+ K + + K + K++L EW+ + Sbjct: 139 AIYLDRGYECCKQFMQKKIIEPYIDLDKLSRKEVNFKSKLIEWSQKNKMEVSFELIEQFL 198 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +++P F V I G+ G SK+ ++Q AA LK+ Sbjct: 199 DKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMALKKIK 241 >gi|153005020|ref|YP_001379345.1| ribonuclease III [Anaeromyxobacter sp. Fw109-5] gi|152028593|gb|ABS26361.1| Ribonuclease III [Anaeromyxobacter sp. Fw109-5] Length = 377 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 117/225 (52%), Gaps = 7/225 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLF 60 +TLE R+G +RS ALTH S + +++ ERLEFLGD ++ L +S L Sbjct: 17 VATLEARLGLCLGDRSTALAALTHKSYVNEHRDEPGLGDNERLEFLGDAVIDLAVSHRLM 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F +A+EG+LS ++V + S++AR LDL S +R+ S+ AD +E Sbjct: 77 ERFPAAREGDLSKMRAAVVDEQGLSEMARALDLGSLLRLGRGEELTGGRRKASLLADAME 136 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++AALYLD G+ +D++ ++ RD KT+LQE A ++ TP Y+V Sbjct: 137 AVVAALYLDAGLAPVLVLIDRFLGDAFARAAAGTLDRDFKTQLQELAQSRVRATPRYRVV 196 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH F V E+ G +G SK+ AEQ AA L Sbjct: 197 GEHGPDHSKTFEVETELRGEVVGRGTGRSKKDAEQAAAKIGLDLL 241 >gi|326560591|gb|EGE10972.1| ribonuclease III [Moraxella catarrhalis 103P14B1] gi|326565582|gb|EGE15745.1| ribonuclease III [Moraxella catarrhalis 12P80B1] gi|326572025|gb|EGE22027.1| ribonuclease III [Moraxella catarrhalis BC8] gi|326573972|gb|EGE23922.1| ribonuclease III [Moraxella catarrhalis O35E] gi|326574964|gb|EGE24894.1| ribonuclease III [Moraxella catarrhalis 101P30B1] Length = 262 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 105/224 (46%), Gaps = 10/224 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L ++GY F + SLL +ALTH S ++SYERLEFLGD +L +I+ LF + E Sbjct: 35 LYAKLGYTFKDVSLLCRALTHRSY--DPKKSYERLEFLGDALLSSIITKALFAQYPKHDE 92 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ +LV ET Q+A L+L+ + + RK SI AD VE+LIAA+YL Sbjct: 93 GKLTRMRAALVRQETLVQIADHLELSRHLILGVGERKGGGRHRASILADAVEALIAAVYL 152 Query: 129 DGGIEVAGTFVDKYWKQRALK------SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 D + + + +DAK+ LQE P Y++ G Sbjct: 153 DNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQTLG 212 Query: 183 PDHDPRFTVV--VEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F V + G+ P S+R AEQ A ++ + Sbjct: 213 SAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQLN 256 >gi|296113914|ref|YP_003627852.1| ribonuclease III [Moraxella catarrhalis RH4] gi|295921608|gb|ADG61959.1| ribonuclease III [Moraxella catarrhalis RH4] Length = 266 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 105/224 (46%), Gaps = 10/224 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L ++GY F + SLL +ALTH S ++SYERLEFLGD +L +I+ LF + E Sbjct: 39 LYAKLGYTFKDVSLLCRALTHRSY--DPKKSYERLEFLGDALLSSIITKALFAQYPKHDE 96 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ +LV ET Q+A L+L+ + + RK SI AD VE+LIAA+YL Sbjct: 97 GKLTRMRAALVRQETLVQIADHLELSRHLILGVGERKGGGRHRASILADAVEALIAAVYL 156 Query: 129 DGGIEVAGTFVDKYWKQRALK------SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 D + + + +DAK+ LQE P Y++ G Sbjct: 157 DNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQTLG 216 Query: 183 PDHDPRFTVV--VEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F V + G+ P S+R AEQ A ++ + Sbjct: 217 SAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQLN 260 >gi|229820101|ref|YP_002881627.1| ribonuclease III [Beutenbergia cavernae DSM 12333] gi|229566014|gb|ACQ79865.1| ribonuclease III [Beutenbergia cavernae DSM 12333] Length = 252 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 4/221 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + +E+R+G + L A TH S +H + ERLEFLGD +LG++I+ LF Sbjct: 17 LAAVEERLGVGI-DPELAVLAFTHRSFAHEAGGIPTNERLEFLGDSVLGVVITDHLFRSR 75 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EGEL+ + VS + VAREL L + + SI +D +E++I Sbjct: 76 PDSSEGELAKMRAACVSQRALAVVARELRLGEHLLLGKGESATGGRDKDSILSDTLEAVI 135 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YL G+EV + + + + + A+ G+ G Sbjct: 136 GAVYLTNGLEVVRDVLLRLLGPSLAVAAELGAGLDWKTSLQELSAELGLGAPLYDVDGVG 195 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDHD RFT V I+ G +K+ AEQ AA Sbjct: 196 PDHDRRFTAHVVIAERVWGSGTGSAKKHAEQEAARTAYAAL 236 >gi|309263205|ref|XP_001473806.2| PREDICTED: ribonuclease 3-like [Mus musculus] Length = 1343 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1075 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1134 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1135 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1193 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1194 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1253 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1254 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1302 Score = 43.8 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 839 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 869 Score = 35.7 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 25/46 (54%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 ERLEFLGD ++ L S L+ F S +EG L+ ++V + Sbjct: 923 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQH 968 >gi|237785779|ref|YP_002906484.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385] gi|237758691|gb|ACR17941.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385] Length = 246 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 3/200 (1%) Query: 23 LEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 L ALTH S ++ + ERLEFLGD +LGL ++ L+ + E E+S +V+ Sbjct: 43 LRLALTHRSFANENGMLPNNERLEFLGDAVLGLSVAERLYRDYPDRTESEISKMRAGVVN 102 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + VARE+ L + + + SI AD E+++ A+YL+ G + A + Sbjct: 103 MYALADVAREIGLGDHVLLGRGEQLTNGKDKNSILADTTEAMLGAIYLEHGFQTAKDVIL 162 Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGPDHDPRFTVVVEISGLA 199 + +K R + + + T SGP HDP FT V + G Sbjct: 163 RLFKSRIESAPTVGLHMDWKTELLEKIAGRGLGEPEYNTTISGPAHDPHFTSTVSLQGKV 222 Query: 200 PAQGMDCSKRAAEQVAAAEV 219 G +K+ AE AA E Sbjct: 223 WGHGEGHTKKEAEHHAAREA 242 >gi|228470695|ref|ZP_04055546.1| ribonuclease III [Porphyromonas uenonis 60-3] gi|228307552|gb|EEK16548.1| ribonuclease III [Porphyromonas uenonis 60-3] Length = 243 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 6/224 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLF 60 ++L RIG L A+ H S + + + ERLEFLGD +L I T L+ Sbjct: 11 DLTSLFDRIGIVPVRTDLYLLAMRHRSCTIIGEGGEKLNNERLEFLGDAVLEASICTYLY 70 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG+LS +SLVS ++V R L L +I + + + ++ Sbjct: 71 HLHPTWDEGDLSKCKSSLVSRPVNNEVGRRLHLERYIIMVPSALDNSVDIYGNTVEALIG 130 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++ + ++ ++ + ++ K+EL EW + Sbjct: 131 AIYLDQGYARTQDFVRDYILPTYRDMREHTVASIQNYKSELIEWVQKHHLSHEFRLEEHQ 190 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + P HD F V I G +G SK+ A+Q AA + L+ Sbjct: 191 TMP-HD-HFIYSVWIDGKPVGRGAGSSKKRAQQEAARDTLELLK 232 >gi|163856074|ref|YP_001630372.1| ribonuclease III [Bordetella petrii DSM 12804] gi|229564350|sp|A9IIJ2|RNC_BORPD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|163259802|emb|CAP42103.1| Ribonuclease III [Bordetella petrii] Length = 252 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 110/221 (49%), Gaps = 6/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +TLE R+ + F N +LLE+ALTH S S ERLEFLGD +L +++ +LF F Sbjct: 1 MSLATLETRLDHRFGNAALLEQALTHRSHS---ARHNERLEFLGDSVLNFVVAAMLFERF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + + + + L+L+ ++R+ K SI AD VE++ Sbjct: 58 PKLDEGDLSRLRANLVKQASLADIGQRLELSQYLRLGEGELKSGGFRRPSILADAVEAIF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A +LDGG + A + + ++ +DAKT LQE+ + P Y V Sbjct: 118 GAAFLDGGFDTARKVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPLYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221 G H +F V I L S+RAAEQ AA L+ Sbjct: 178 GAAHSQQFEVECAIPALEIKVVAPGASRRAAEQSAAKLALE 218 >gi|257066163|ref|YP_003152419.1| ribonuclease III [Anaerococcus prevotii DSM 20548] gi|256798043|gb|ACV28698.1| ribonuclease III [Anaerococcus prevotii DSM 20548] Length = 239 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 110/209 (52%), Gaps = 6/209 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFN 61 + E +IGY F ++ L++ A THSS ++ ++S ERLEFLGD IL +++S +LF Sbjct: 10 KIEEFENKIGYTFNDKDLIDVAFTHSSYTNEVKGKKKSNERLEFLGDSILDMIVSEVLFK 69 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H+ EG L+ + LV + ++ + ++ +F+ + R+ ++AD E+ Sbjct: 70 HYSMKPEGWLTKTRSRLVCTSSFAKACEKFEMTTFLNFGNGERQGGGELKKHVKADTFEA 129 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + AA+YLD + F+ + +K+ + D KT+LQE+ +AK +Y + Sbjct: 130 VCAAIYLDSSYDNLFKFLKENYKEEALEIINDDSIFNDYKTKLQEYHNAKDRKILKYVLV 189 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 GP+H+ FT+ V++ A G+ + Sbjct: 190 KEEGPEHEKTFTMAVKLGNKVLAHGVGKN 218 >gi|73953908|ref|XP_854135.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 2 [Canis familiaris] Length = 1365 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1097 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1156 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1157 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1215 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1216 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1275 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1276 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1324 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 954 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1013 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 1014 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1073 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1074 LHPLQLQEPNTDRQLIETSPV 1094 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 870 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 900 >gi|269468620|gb|EEZ80264.1| dsRNA-specific ribonuclease [uncultured SUP05 cluster bacterium] Length = 221 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 116/220 (52%), Gaps = 6/220 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE++I Y F + SLL+ ALTH S+ + ERLEFLGD ILGL+IS L+ F Sbjct: 2 KKLEQKIDYQFKDISLLKLALTHRSVGK---NNNERLEFLGDSILGLVISRELYKRFTHV 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS + LV +T +Q+A LDL++ + + S K SIQADVVE++ A+ Sbjct: 59 DEGKLSRLRSHLVRGQTLAQLASTLDLSNILILGSGELKSGGFRRESIQADVVEAIFGAV 118 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LD + T + K +K+R +D KT+LQE+ + P+Y++ G D Sbjct: 119 FLDSDFDTVNTVILKLYKERLDIINPNDSLKDFKTQLQEYLQKRGNALPKYELIKTVGKD 178 Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 H+ FT+ + + S + AEQ A +L R Sbjct: 179 HNAVFTINCSLQDQNMKVKQKATSIKRAEQSCAQALLDRL 218 >gi|190575414|ref|YP_001973259.1| ribonuclease III [Stenotrophomonas maltophilia K279a] gi|190013336|emb|CAQ46970.1| putative ribonuclease III [Stenotrophomonas maltophilia K279a] Length = 226 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 75/217 (34%), Positives = 112/217 (51%), Gaps = 7/217 (3%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 IG+AF++ +LL++ALTH S ERLEFLGD I+ ++ + L+ + A EG Sbjct: 10 DLIGHAFSDPALLKQALTHRSAG---APHNERLEFLGDSIVNMMAAEALYRRWPKADEGA 66 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 ++ LV + +AR L L + + K SI AD VE+++AA+YLD Sbjct: 67 MTRARAELVREGALAVIARTLQLGERLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDA 126 Query: 131 GIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G E V ++ + SG+ +D KT LQEW A+ P+Y++ SG DH Sbjct: 127 GFEACRAVVLPWFSASIEALPASGRPEKDPKTRLQEWLQARQKALPQYELVSESGDDHAK 186 Query: 188 RFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V ++ A +G S+R AEQ AAA VL++ Sbjct: 187 HFRVRCNVADPAASTEGEGASRRLAEQQAAAAVLEQL 223 >gi|295109853|emb|CBL23806.1| RNAse III [Ruminococcus obeum A2-162] Length = 223 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 107/207 (51%), Gaps = 5/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 LE+ IGY F N+ LL++ALTHSS ++ + ERLEFLGD +L L+ S L+ Sbjct: 2 EQLEQIIGYTFQNKKLLKQALTHSSYANEKKLGKLGCNERLEFLGDAVLELISSDFLYRK 61 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EGEL+ + SLV + + ARE L F+ + SI +D E+L Sbjct: 62 FSQIPEGELTKKRASLVCEPSLAYCAREFGLPEFLLLGKGENMTGGRNRDSIVSDATEAL 121 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + A+YLDGG A FV + + D+KT LQE K EY +T G Sbjct: 122 LGAIYLDGGFSNAKKFVLNFILNDIEHK-QLFYDSKTILQELVQEKGLQPIEYVLTGEDG 180 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 PDHD RFTVVV+++G G +K+ Sbjct: 181 PDHDKRFTVVVQVNGQVVGSGTGHTKK 207 >gi|146278605|ref|YP_001168764.1| ribonuclease III [Rhodobacter sphaeroides ATCC 17025] gi|189043338|sp|A4WVP5|RNC_RHOS5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|145556846|gb|ABP71459.1| RNAse III [Rhodobacter sphaeroides ATCC 17025] Length = 229 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 85/214 (39%), Positives = 121/214 (56%), Gaps = 1/214 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + E RIG+AF L +A+TH+S+S + + +RLEFLGDR+LGL+++ L Sbjct: 1 MKLSTDLRAFESRIGHAFREPDRLLRAVTHASLSSATRPDNQRLEFLGDRVLGLVMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 +A EG+L+ RFN+LV ETC+ VARE+ L +++ ++ D + Sbjct: 61 LAADKAATEGQLAPRFNALVRKETCAAVAREVGLGDVLKLGRSEMMSGGRRKEALLGDAL 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+YLD G E A V + W +R + RDAKT LQEWA A+ P Y+ Sbjct: 121 EAVIAAVYLDAGFEAARRLVLRLWGERIAQVEADARDAKTALQEWAQARGLPPPCYEAVD 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 RSGPDH P FTV V + + +KR AEQ Sbjct: 181 RSGPDHAPIFTVEVRLGNGETERSAAGTKRVAEQ 214 >gi|167041438|gb|ABZ06190.1| putative RNase3 domain protein [uncultured marine microorganism HF4000_006O13] gi|167041995|gb|ABZ06732.1| putative RNase3 domain protein [uncultured marine microorganism HF4000_141E02] Length = 224 Score = 120 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 5/216 (2%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E+R Y F + LL+ ALTH S S ++ ERLEFLGD L L+IS LL+ + EG Sbjct: 9 EQRFHYRFKDDILLQTALTHRSHS---VDNNERLEFLGDAALDLVISELLYQSYSEQTEG 65 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 LS +SLV T +++A+ELD+ ++ + S+ +D +E++I A++LD Sbjct: 66 YLSRMRSSLVKGNTLAELAKELDVGGYLILGKGENTSGGRERLSLLSDTLEAMIGAIFLD 125 Query: 130 GGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 GG + K + R K + + RS DH+ Sbjct: 126 GGYVAVKNVIIKIFDSRIQALDPKSEHKDHKSVLQEKLQGVKQGLPVYSLVRSVGDHNKT 185 Query: 189 FTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G Q + R AEQ AA++ L+ Sbjct: 186 FVVECSIKSGEIVTQASGKTLRVAEQKAASKALQAM 221 >gi|50122200|ref|YP_051367.1| ribonuclease III [Pectobacterium atrosepticum SCRI1043] gi|81644286|sp|Q6D219|RNC_ERWCT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|49612726|emb|CAG76176.1| ribonuclease III [Pectobacterium atrosepticum SCRI1043] Length = 226 Score = 120 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 69/213 (32%), Positives = 106/213 (49%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILINRLQRKLGYTFQQYELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 DRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDILNIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRA 210 G HD FT+ ++SG + + G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRK 210 >gi|60679772|ref|YP_209916.1| putative ribonuclease III [Bacteroides fragilis NCTC 9343] gi|253564432|ref|ZP_04841889.1| ribonuclease 3 [Bacteroides sp. 3_2_5] gi|81317155|sp|Q5LIS2|RNC_BACFN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|60491206|emb|CAH05954.1| putative ribonuclease III [Bacteroides fragilis NCTC 9343] gi|251948208|gb|EES88490.1| ribonuclease 3 [Bacteroides sp. 3_2_5] gi|301161237|emb|CBW20775.1| putative ribonuclease III [Bacteroides fragilis 638R] Length = 290 Score = 120 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 11/230 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57 YS + +G+ N L E+AL H S + + ERLEFLGD IL ++ Sbjct: 16 DRESYSCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGD 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +++ HF+ +EG L+ + +V ET +++A E+ L I+ S+ + + + Sbjct: 76 IVYQHFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHN----SYMYGN 131 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPE 174 E+ I A+YLD G E F+++ + + K + K++L EW+ Sbjct: 132 AFEAFIGAIYLDRGYECCKQFMERRIIEPYIDLDKLSRKEVNFKSKLIEWSQKNKMEVSF 191 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + +++P F V I G+ G SK+ ++Q AA LK+ Sbjct: 192 ELIEQSLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMTLKKIK 241 >gi|193211801|ref|YP_001997754.1| Ribonuclease III [Chlorobaculum parvum NCIB 8327] gi|193085278|gb|ACF10554.1| Ribonuclease III [Chlorobaculum parvum NCIB 8327] Length = 276 Score = 120 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 8/226 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLL 59 S LE G + R + ALTH S+ H +Q ES +RLEFLGD +L LLIS L Sbjct: 39 LSHLEHLTGRPCSRRQIYRIALTHRSLLHDHQGESERPESNQRLEFLGDAVLDLLISEHL 98 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F + + EG LS +V+ + + AREL L + + S AD Sbjct: 99 FRLYPESDEGHLSSNRAKIVNRKALAAFARELKLGEHLIIGESANLQKIRTSDSALADAF 158 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+L+ A+YLD G++ A F+ + + + + K+ L E++ + P Y V Sbjct: 159 EALVGAIYLDQGLDGAKRFIMNHVITMVDLNRIVEAEFNYKSRLIEFSQSHQLPQPVYTV 218 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G +H+ F + V + + +G K+ AEQ+AA E +KR Sbjct: 219 VAEEGAEHEKTFVIEVSCNDIPLGKGTAPRKKDAEQLAAREAMKRL 264 >gi|291395193|ref|XP_002714143.1| PREDICTED: ribonuclease III, nuclear [Oryctolagus cuniculus] Length = 1338 Score = 120 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1070 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1129 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1130 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1188 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1189 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1248 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1249 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1297 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 927 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 986 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 987 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1046 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1047 LHPLQLQEPNTDRQLIETSPV 1067 Score = 43.4 bits (100), Expect = 0.021, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 843 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 873 >gi|146306507|ref|YP_001186972.1| ribonuclease III [Pseudomonas mendocina ymp] gi|189043331|sp|A4XSC4|RNC_PSEMY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|145574708|gb|ABP84240.1| RNAse III [Pseudomonas mendocina ymp] Length = 229 Score = 120 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 73/218 (33%), Positives = 107/218 (49%), Gaps = 11/218 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS S LE+++G++F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSP-NLSRLERKLGHSFKDQDLMILALTHRSFA---GRNNERLEFLGDAILNFVAGEALF 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A+EG+LS LV ET + +AR +L ++R+ S K SI AD +E Sbjct: 57 ERFPQAREGQLSRLRARLVKGETLAVLARGFELGEYLRLGSGELKSGGFRRESILADALE 116 Query: 121 SLIAALYLDGGIE--VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD G++ + L +D KT LQE+ ++ P Y+V Sbjct: 117 ALIGAIYLDAGMDAARERVLDWLSGELDGLTLIDTNKDPKTRLQEFLQSRACELPRYEVV 176 Query: 179 FRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213 G H F V ++ + G S+R AEQ Sbjct: 177 DIQGEPHCRTFMVECQVALLNEKTL--GQGGSRRIAEQ 212 >gi|260775208|ref|ZP_05884106.1| ribonuclease III [Vibrio coralliilyticus ATCC BAA-450] gi|260608909|gb|EEX35071.1| ribonuclease III [Vibrio coralliilyticus ATCC BAA-450] Length = 225 Score = 120 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 114/213 (53%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ + LEK++GY F + L+ ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIAKLEKKLGYQFNDAELINLALTHRSA---HGKHNERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE +L +++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD IEV + ++KQR ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDIEVVRGIILSWYKQRLEAIQPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ +FTV E++G+ +P G S+R Sbjct: 177 NIKGEAHNQQFTVSCEVAGVGSPVIGKGTSRRK 209 >gi|288817568|ref|YP_003431915.1| ribonuclease III [Hydrogenobacter thermophilus TK-6] gi|288786967|dbj|BAI68714.1| ribonuclease III [Hydrogenobacter thermophilus TK-6] gi|308751168|gb|ADO44651.1| ribonuclease III [Hydrogenobacter thermophilus TK-6] Length = 232 Score = 120 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 72/216 (33%), Positives = 105/216 (48%), Gaps = 9/216 (4%) Query: 14 GYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 GY F ++ LLE+ALTH S + +SYE LEFLGD ++ L + +L F AKEG+L+ Sbjct: 17 GYTFRDKKLLEQALTHKSYAVEKGVKSYETLEFLGDALINLFVVDILLQEFPQAKEGQLA 76 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 VS E Q+A+EL+ + +K SI D ESL A+Y+D G Sbjct: 77 PMKAFFVSEEFLHQLAQELE--LEKYLLLGGKKGKFKVNVSILGDAFESLWGAIYIDTGR 134 Query: 133 EVAGTFV-----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 + T K +S +++D KT LQE ++ P Y+V SGP H Sbjct: 135 DTNFTRSLFERLYKNRIITMARSSDYKKDYKTILQEITQKRWKERPTYRVVSVSGPQHGK 194 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + A +K+ AEQ++A VL+ Sbjct: 195 VFEVECSVRNIR-AVAAGSNKKEAEQLSAKRVLELL 229 >gi|194335354|ref|YP_002017148.1| Ribonuclease III [Pelodictyon phaeoclathratiforme BU-1] gi|194307831|gb|ACF42531.1| Ribonuclease III [Pelodictyon phaeoclathratiforme BU-1] Length = 273 Score = 120 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 111/222 (50%), Gaps = 7/222 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFNHF 63 L++ +G +N L + ALTH S+ H ES +RLEFLGD +LG+LIS LF F Sbjct: 47 LQQLVGEPVSNLPLYQTALTHRSVVHDPATTSLIESNQRLEFLGDSVLGMLISEYLFRKF 106 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 ++ EGELS +V++++ + AR L L + + S AD ESLI Sbjct: 107 PTSAEGELSSNRAKIVNSKSLAGFARSLCLGDHLILGESADHHKIRSSESALADAFESLI 166 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD GI+ A FV + + + + K+ L E+ + P Y V + Sbjct: 167 GAIYLDKGIKTAFDFVIRSIIEHVNFNTIVAAEHNYKSRLIEYTQSNHLPPPLYTVITET 226 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G +H+ FTV V SG G K+ AEQ+AA E ++R Sbjct: 227 GAEHEKSFTVGVSCSGELLGTGTAQRKKDAEQLAAKEAMERI 268 >gi|27364934|ref|NP_760462.1| ribonuclease III [Vibrio vulnificus CMCP6] gi|31076872|sp|Q8DC76|RNC_VIBVU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|27361080|gb|AAO09989.1| ribonuclease III [Vibrio vulnificus CMCP6] Length = 225 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ L +++GY F + LL ALTH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIEKLTRQLGYQFQDDELLNLALTHRSA---NSKHNERLEFLGDSILSFVIADELY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE L ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD +EV V ++ R ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAVYLDSDLEVVRGIVLNWYTSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ FTV +I+G+ P G S+R Sbjct: 177 NIKGEAHNQEFTVECDIAGMDKPVVGRGTSRRK 209 >gi|308388873|gb|ADO31193.1| putative ribonuclease III [Neisseria meningitidis alpha710] Length = 267 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 69/218 (31%), Positives = 111/218 (50%), Gaps = 6/218 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++KR+GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 40 AAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPKL 96 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 97 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 156 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + R +D KT LQE A+ P+Y++ + G Sbjct: 157 SFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 216 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 +D F + ++ L + S++AAEQ AA E L+ Sbjct: 217 NDSMFVISCDLGELGFVCRAKGTSRKAAEQSAAKEALQ 254 >gi|85059765|ref|YP_455467.1| ribonuclease III [Sodalis glossinidius str. 'morsitans'] gi|123519061|sp|Q2NS13|RNC_SODGM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|84780285|dbj|BAE75062.1| ribonuclease III [Sodalis glossinidius str. 'morsitans'] Length = 226 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+K++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPILTNRLQKKLGYTFQQHDLLLQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 QRFPRVDEGDMSRMRATLVRGNTLAEMAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + +++ R + G ++D KT LQE+ + P Y+V Sbjct: 118 ALIGGVFLDSDIRTVEKLILDWYRSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYQVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLAQPVVGNGSSRRK 210 >gi|300724126|ref|YP_003713443.1| RNase III, ds RNA [Xenorhabdus nematophila ATCC 19061] gi|297630660|emb|CBJ91325.1| RNase III, ds RNA [Xenorhabdus nematophila ATCC 19061] Length = 226 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 109/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+A+ + L+ ++GY F LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNAILTNRLQHKLGYTFTQHDLLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD +E Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGHRRESILADSIE 117 Query: 121 SLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGAIFLDSDIQTIEKIILNWYETRLNEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRA 210 G HD FT+ ++SG P +G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGFEQPVRGVGSSRRK 210 >gi|99082399|ref|YP_614553.1| RNAse III [Ruegeria sp. TM1040] gi|99038679|gb|ABF65291.1| RNAse III [Ruegeria sp. TM1040] Length = 242 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 76/205 (37%), Positives = 117/205 (57%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + R+G+ F++ LL +ALTH S+S ++ +RLEFLGDR+LGL+++T L H Sbjct: 20 DILAFQARLGHEFSSPELLIRALTHPSVSSPNRQDNQRLEFLGDRVLGLVMATALLEHDK 79 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG+L+ RFN+LV ETC+ VAR++DL + +++ ++ D +E++IA Sbjct: 80 DATEGQLAPRFNALVRKETCADVARQIDLGAVLKLGRSEMLSGGRRKQALLGDAMEAVIA 139 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+Y D G E A + + + W +R + RD KT LQE+ A+ P Y + R GPD Sbjct: 140 AVYRDAGFEAAQSVILRLWGKRVGTVEEDARDPKTALQEFVQARRQPPPAYVLVARKGPD 199 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 H+P FT+ + Q SKR Sbjct: 200 HEPIFTIAARLEDGTEEQATAGSKR 224 >gi|73953920|ref|XP_868251.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 8 [Canis familiaris] Length = 1297 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1029 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1088 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1089 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1147 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1148 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1207 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1208 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1256 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 886 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 945 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 946 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1005 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1006 LHPLQLQEPNTDRQLIETSPV 1026 Score = 43.4 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 802 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 832 >gi|73953922|ref|XP_536514.2| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 1 [Canis familiaris] Length = 1328 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1060 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1119 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1120 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1178 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1179 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1238 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1239 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1287 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 917 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 976 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 977 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1036 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1037 LHPLQLQEPNTDRQLIETSPV 1057 Score = 43.4 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 833 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 863 >gi|309810296|ref|ZP_07704134.1| ribonuclease III [Dermacoccus sp. Ellin185] gi|308435724|gb|EFP59518.1| ribonuclease III [Dermacoccus sp. Ellin185] Length = 272 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 94/204 (46%), Gaps = 3/204 (1%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + SLL +ALTH S ++ ER EFLGD +LGL+++ L+ A EG L+ + Sbjct: 34 DESLLRRALTHRSFAYENGGIPHNERQEFLGDAVLGLVVTETLYTDQPDAPEGHLAKQRA 93 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 ++V++ ++VAR L+L ++ + SI AD E++I ++L GGIE Sbjct: 94 AVVNSRALAEVARGLELGEYLLLGRGELATGGRDKDSILADTTEAVIGTVFLSGGIEAGR 153 Query: 137 TFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V +S + A A G+ V GPDHD FT V + Sbjct: 154 RIVHHLIDPLMNRSSTMGAALDWKTSLQEATAAAGLGAPTYVVEGEGPDHDKVFTATVLV 213 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEV 219 G G +K++AE +AA Sbjct: 214 DGRTLGAGTGRNKKSAEMIAAENA 237 >gi|148652186|ref|YP_001279279.1| ribonuclease III [Psychrobacter sp. PRwf-1] gi|148571270|gb|ABQ93329.1| RNAse III [Psychrobacter sp. PRwf-1] Length = 259 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 7/224 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +L+K++GY+F + SL + ALTH S + +YERLEFLGD +LG++I L+ + Sbjct: 26 LLSLQKQLGYSFNDTSLAKLALTHRSF--DGKINYERLEFLGDALLGMIIGEALYYQYPK 83 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG L+ +LV E+ VA++L+L+S++ + RK SI AD VESLI A Sbjct: 84 QDEGRLTRMRATLVRQESLVVVAQKLNLSSYLILGVGERKGGGRERASILADTVESLIGA 143 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD W + + +R DAK+ LQEW P Y + G Sbjct: 144 IYLDSQSVDTVKACVLDWFAELIDNVNDQRVLKDAKSRLQEWLQGYKFELPNYDLLETQG 203 Query: 183 PDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F V E+ P S+R AEQ A +++ + Sbjct: 204 NAPNQVFIVRCEVDVPHTTPIVESGESRRIAEQKTAEKMINQLN 247 >gi|317154737|ref|YP_004122785.1| ribonuclease III [Desulfovibrio aespoeensis Aspo-2] gi|316944988|gb|ADU64039.1| ribonuclease III [Desulfovibrio aespoeensis Aspo-2] Length = 230 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 4/226 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFN 61 + L++RI + F L+E ALTHSS ++ + ERLEFLGD +L L IS + Sbjct: 1 MDTGDLQQRIHHRFGQVKLMEAALTHSSHANEQEGDGDNERLEFLGDAVLELCISEEGYR 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A EG+L+ + LV ++ + +AR LDL I + ++ AD E+ Sbjct: 61 RFPHAPEGQLTRIRSQLVKEKSLAAIARSLDLHRHILLGKGEELQGGRDRDALLADAFEA 120 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A++LDGG A + + + + +D K+ LQE A +F P Y + Sbjct: 121 LMGAVFLDGGFAAARKSILHIFGDKWPEAEMLPETKDYKSRLQEVAQERFRDRPVYVLAG 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 SGP+H+ F V + A +G+ S + AEQ AA L+ + Sbjct: 181 TSGPEHEKVFMVDATLPTGACFRGVSSSVKRAEQEAARLGLRALNV 226 >gi|320155320|ref|YP_004187699.1| ribonuclease III [Vibrio vulnificus MO6-24/O] gi|56749444|sp|Q7MHN8|RNC_VIBVY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|319930632|gb|ADV85496.1| ribonuclease III [Vibrio vulnificus MO6-24/O] Length = 225 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ L +++GY F + LL ALTH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIEKLTRQLGYQFQDDELLNLALTHRSA---NSKHNERLEFLGDSILSFVIADELY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE L ++++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD +EV V ++ R ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAVYLDSDLEVVRGIVLNWYASRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ FTV +I+G+ P G S+R Sbjct: 177 NIKGEAHNQEFTVECDIAGMDKPVVGRGTSRRK 209 >gi|37681015|ref|NP_935624.1| ribonuclease III [Vibrio vulnificus YJ016] gi|37199765|dbj|BAC95595.1| dsRNA-specific ribonuclease [Vibrio vulnificus YJ016] Length = 259 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ L +++GY F + LL ALTH S + ERLEFLGD IL +I+ L+ Sbjct: 35 MNS-PIEKLTRQLGYQFQDDELLNLALTHRSA---NSKHNERLEFLGDSILSFVIADELY 90 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE L ++++ K SI AD VE Sbjct: 91 HRFPKVNEGDMSRMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVE 150 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD +EV V ++ R ++D KT LQE+ + P Y VT Sbjct: 151 AIIGAVYLDSDLEVVRGIVLNWYASRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 210 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ FTV +I+G+ P G S+R Sbjct: 211 NIKGEAHNQEFTVECDIAGMDKPVVGRGTSRRK 243 >gi|219848618|ref|YP_002463051.1| Ribonuclease III [Chloroflexus aggregans DSM 9485] gi|254807244|sp|B8GAM6|RNC_CHLAD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|219542877|gb|ACL24615.1| Ribonuclease III [Chloroflexus aggregans DSM 9485] Length = 229 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 7/209 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS------YQESYERLEFLGDRILGLLISTL 58 R + LE+ +G F +R LL+ AL H S+ + ERLEFLGD +L + +T Sbjct: 4 RLAELERALGITFRDRKLLQTALMHRSLFNEQPHLLSNLSDNERLEFLGDSVLHFVTTTW 63 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF F E L+ +LVS + ++ A L+L + +S + + AD+ Sbjct: 64 LFQQFPHQNESTLTSWRAALVSTKGLAECAATLNLGQYAFLSRGEDTPKGRQRSKLLADL 123 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLD G+E A F++ + +R D T LQE ++ P+Y + Sbjct: 124 FEAVIGAIYLDQGLEAARAFIEPFLHERIGTLQTAVLDPTTRLQEIVQSRHKQLPKYYLI 183 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 GPDH + + V + G G S Sbjct: 184 DERGPDHQREYVMAVTVEGHEY-TGTGPS 211 >gi|94676727|ref|YP_588731.1| ribonuclease III [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219877|gb|ABF14036.1| ribonuclease III [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 225 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 76/212 (35%), Positives = 116/212 (54%), Gaps = 7/212 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L + L+K+IGY F N++LL +ALTH S S+ + ERLEFLGD IL +I+ L+ Sbjct: 1 MNCL-LNNLQKKIGYYFQNQNLLLQALTHRSASN---KHNERLEFLGDSILSYVIAHALY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++AREL+L++ +R+ K SI AD VE Sbjct: 57 QRFQYINEGDMSRMRATLVRGNTLAEIARELNLSTCLRLGIGELKSGGLSRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI +++LD I F+ ++ R K ++D KT LQE+ + P Y + Sbjct: 117 ALIGSIFLDSNIFTVEKFILNLYRSRLNKIIPGERQKDPKTRLQEYLQGQHMPLPIYIIV 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKR 209 SG HD RF + +++ L P G S+R Sbjct: 177 QISGETHDQRFIIHCQVNNLANPIIGHGSSRR 208 >gi|77165916|ref|YP_344441.1| ribonuclease III [Nitrosococcus oceani ATCC 19707] gi|254434280|ref|ZP_05047788.1| ribonuclease III [Nitrosococcus oceani AFC27] gi|90101630|sp|Q3J8D5|RNC_NITOC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|76884230|gb|ABA58911.1| RNAse III [Nitrosococcus oceani ATCC 19707] gi|207090613|gb|EDZ67884.1| ribonuclease III [Nitrosococcus oceani AFC27] Length = 233 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 115/214 (53%), Gaps = 8/214 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L +++GY FA +LL A+TH S + + ERLEFLGD IL LI+ L++ F Sbjct: 5 LERLCRKLGYRFAEPALLRHAITHRSATKE---NNERLEFLGDSILNFLIADFLYSGFPR 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EGELS +LV ET +++AREL++ + + K TSI AD E++I A Sbjct: 62 AQEGELSRLRATLVKGETLAELARELEIGDHLILGLGELKSGGYRRTSILADAFEAVIGA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK----FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YLDGG+E V ++ R +D KT LQE+ A+ P+Y+V+ S Sbjct: 122 VYLDGGLEACRKLVSSLYRDRLETLTNEALLNLKDPKTRLQEYLQARQFPLPDYRVSAVS 181 Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQV 214 G HD F V ++ P+ G+ S+R AEQ Sbjct: 182 GEAHDQVFQVECTLNNTFPSVIGIGRSRRKAEQD 215 >gi|53711509|ref|YP_097501.1| ribonuclease III [Bacteroides fragilis YCH46] gi|81383900|sp|Q64ZV9|RNC_BACFR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|52214374|dbj|BAD46967.1| ribonuclease III [Bacteroides fragilis YCH46] Length = 290 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 11/230 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57 YS + +G+ N L E+AL H S + + ERLEFLGD IL ++ Sbjct: 16 DRESYSCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGD 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +++ HF+ +EG L+ + +V ET +++A E+ L I+ S+ + + + Sbjct: 76 IVYQHFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHN----SYMYGN 131 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPE 174 E+ I A+YLD G E F+++ + + K + K++L EW+ Sbjct: 132 AFEAFIGAIYLDRGYECCKQFMERRIIEPYIDLDKLSRKEVNFKSKLIEWSQKNKMEVSF 191 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + +++P F V I G+ G SK+ ++Q AA LK+ Sbjct: 192 ELIEQSLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMTLKKIK 241 >gi|169261416|gb|ACA52288.1| nuclear ribonuclease III protein [Xenopus tropicalis] Length = 1325 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1061 KLTKFEEAIGVEFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1120 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F + ++ V AD++ES Sbjct: 1121 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAITNDKTKRPVVLRT-KTLADLLESF 1179 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1180 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1239 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1240 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1288 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 57/125 (45%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F +EG L+ ++V + + +A++L+L F+ Sbjct: 918 NHNERLEFLGDAVVEFLTSVHLYYLFPLLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 977 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+L+ A+YL+GG+E A + + Sbjct: 978 LYAHGPDLCRESDLRHAMANCFEALMGAVYLEGGLEEAKQLFGRLLFGNQDLRDVWLNYP 1037 Query: 158 KTELQ 162 LQ Sbjct: 1038 LHPLQ 1042 Score = 41.1 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 834 LDKLIGYIFTDRCLLQLAMTHPSHHLNFGMN 864 >gi|171909524|ref|ZP_02924994.1| putative Ribonuclease III [Verrucomicrobium spinosum DSM 4136] Length = 238 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 69/209 (33%), Positives = 100/209 (47%), Gaps = 5/209 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63 +LE RI Y F LL++ALTH S+ + + +RLE+LGD +L L++S +++ F Sbjct: 2 DSLESRIAYQFKQPELLQEALTHPSLPYESKNPQRHNQRLEYLGDAVLQLVLSEAIYHQF 61 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ LV T + +AR+L L + + + S ADV+ES+I Sbjct: 62 PLDDEGLLTKLRTRLVQTRTLAHIARQLCLGRDLLLGKGEESNGGRSRESTLADVMESII 121 Query: 124 AALYLDGGIE--VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLDGGIE AL+ + K +LQE + G TP Y++ Sbjct: 122 GAVYLDGGIEAVRPFVLQHWSHDLAALQHSPVELNPKGQLQELLQGEGGNTPTYRIIAAE 181 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 GPDH F VV A G SK+ Sbjct: 182 GPDHQKVFQAVVVWQDRDLAAGTGRSKKE 210 >gi|241761668|ref|ZP_04759755.1| Ribonuclease III [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260754033|ref|YP_003226926.1| ribonuclease III [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283856457|ref|YP_163110.2| ribonuclease III [Zymomonas mobilis subsp. mobilis ZM4] gi|292495068|sp|Q9Z5U2|RNC_ZYMMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|241373976|gb|EER63509.1| Ribonuclease III [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553396|gb|ACV76342.1| ribonuclease III [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283775461|gb|AAV89999.2| Ribonuclease III [Zymomonas mobilis subsp. mobilis ZM4] Length = 246 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 78/209 (37%), Positives = 121/209 (57%), Gaps = 4/209 (1%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M+ + S +EK +G+ + +L +A+TH S + Y+RLEFLGDR+LGL+I+ L Sbjct: 24 MNNDAFISWIEKNLGHRPKDPALFLRAMTHPSHGN---SDYQRLEFLGDRVLGLVIANWL 80 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F EG+LS R NSLVS +C+ +AR + L ++R+ R D + ++ DV+ Sbjct: 81 YDLFPREPEGKLSRRLNSLVSGASCASIARIVGLPQWLRLGKQARDDGAAASDNVLGDVM 140 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++I A++L+ GIE AG + KYW + K+ LQEWA A P Y++ Sbjct: 141 EAMIGAIFLESGIEAAGKLIHKYWAPLVTGQESAPKHPKSALQEWAAAHNRRPPVYEIVS 200 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 R+GP H+P FT+ V I+G+ A SK Sbjct: 201 RTGPQHNPCFTIQVSIAGVGEASAEGSSK 229 >gi|301769069|ref|XP_002919953.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3-like [Ailuropoda melanoleuca] Length = 1369 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1101 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1160 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1161 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1219 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1220 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1279 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1280 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1328 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 958 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1017 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 1018 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1077 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1078 LHPLQLQEPNTDRQLIETSPV 1098 Score = 43.4 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 874 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 904 >gi|265764902|ref|ZP_06093177.1| ribonuclease III [Bacteroides sp. 2_1_16] gi|263254286|gb|EEZ25720.1| ribonuclease III [Bacteroides sp. 2_1_16] Length = 290 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 11/230 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57 YS + +G+ N L E+AL H S + + ERLEFLGD IL ++ Sbjct: 16 DRESYSCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGD 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +++ HF+ +EG L+ + +V ET +++A E+ L I+ S+ + + + Sbjct: 76 IVYQHFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHN----SYMYGN 131 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPE 174 E+ I A+YLD G E F+++ + + K + K++L EW+ Sbjct: 132 AFEAFIGAIYLDRGYECCKQFMERRIIEPYIDLDKLSRKEVNFKSKLIEWSQKNKMEVSF 191 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + +++P F V I G+ G SK+ ++Q AA LK+ Sbjct: 192 ELIEQSLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMTLKKIK 241 >gi|317495799|ref|ZP_07954162.1| ribonuclease III [Gemella moribillum M424] gi|316913976|gb|EFV35459.1| ribonuclease III [Gemella moribillum M424] Length = 237 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 104/233 (44%), Gaps = 9/233 (3%) Query: 1 MSALRYSTLEKRIG--YAFANR--SLLEKALTHSSISHSYQ----ESYERLEFLGDRILG 52 M L ++ Y F + + A +HSS ++ + +YERLEFLGD ++ Sbjct: 1 MERTYIEKLLNKLNNEYGFNLKFGENFKMAFSHSSYTNEKKIAKHLNYERLEFLGDAVVE 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L S LF F EGEL+ S+V +T + A +L+L I + K Sbjct: 61 LTTSEFLFKKFPKLAEGELTKLRASIVCEKTLVKYALQLNLDKCIYLGRGEEKMGGRSRA 120 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGV 171 ++ AD+ ES ALYL+ +E F++ + + D KT LQE+ Sbjct: 121 ALLADIFESFTGALYLETNLETVKIFLNNTLFTEVEDYEYSSFVDYKTILQEYVFKIKLG 180 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 EYKV GP H F VEI G G +K+ +EQ++A + L + G Sbjct: 181 EIEYKVLDSIGPSHSKTFISAVEIDGKQYGSGTAATKKESEQLSAKQALDKLG 233 >gi|73953918|ref|XP_868248.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 7 [Canis familiaris] Length = 1016 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 748 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 807 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 808 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 866 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 867 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 926 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 927 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 975 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 605 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 664 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 665 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 724 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 725 LHPLQLQEPNTDRQLIETSPV 745 Score = 43.4 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 521 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 551 >gi|297717874|gb|ADI50080.1| ribonuclease III [Candidatus Odyssella thessalonicensis L13] Length = 211 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 66/210 (31%), Positives = 122/210 (58%), Gaps = 5/210 (2%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 ++ + F + SL +KA+TH S +ERLEFLGDR+LG++++ +L+ F KEG+L Sbjct: 2 KLKFTFKDPSLFDKAITHPSFRRRKVNDFERLEFLGDRVLGIIVAEMLYKAFPLEKEGDL 61 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + R L+S + C ++A E++L I+V +++ +D +E+LI A++LD G Sbjct: 62 AKRQAVLISRDVCQEIAYEIELHEDIKVVG----TGLDGNSAVLSDAMEALIGAMFLDQG 117 Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 +EV + W++R + +D K+ LQEW ++ P Y++ ++GP H P F + Sbjct: 118 LEVTRQHILPLWEKRLAITQAPPKDHKSLLQEWTQSRGLGIPAYELVNQTGPAHAPEFEI 177 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++++ + + S++ AEQ AA ++L+ Sbjct: 178 LLKVDDHSV-KARGKSRKLAEQEAAKQMLQ 206 >gi|297294054|ref|XP_002804372.1| PREDICTED: ribonuclease 3 isoform 2 [Macaca mulatta] gi|297294056|ref|XP_002804373.1| PREDICTED: ribonuclease 3 isoform 3 [Macaca mulatta] Length = 1374 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1333 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 963 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1082 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1083 LHPLQLQEPNTDRQLIETSPV 1103 Score = 43.4 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 879 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 909 >gi|288576266|ref|ZP_05978490.2| ribonuclease III [Neisseria mucosa ATCC 25996] gi|288565937|gb|EFC87497.1| ribonuclease III [Neisseria mucosa ATCC 25996] Length = 271 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 6/218 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++ ++GY F + +LL++ALTH S + ++ ER EF+GD IL ++ +LF+ F Sbjct: 44 TAIQNKLGYHFKDTALLQQALTHRSY---HAKNNERFEFVGDSILNYTVAKMLFDAFPKL 100 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 101 TEGELSRLRASLVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 160 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + +R + +D KT LQE A+ P+Y++ + G Sbjct: 161 SFDADFAEAEKVVRHLFAERVKRADFKTQGKDNKTALQEALQARRLALPKYRIEEQIGHA 220 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 +D F + ++ L + S++ AEQ AA E L+ Sbjct: 221 NDSMFLISCDLGELGFICKAQGSSRKVAEQQAAKEALQ 258 >gi|332251722|ref|XP_003274996.1| PREDICTED: ribonuclease 3-like [Nomascus leucogenys] Length = 1331 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1063 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1122 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1123 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1181 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1182 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1241 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1242 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1290 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 920 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 979 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 980 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1039 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1040 LHPLQLQEPNTDRQLIETSPV 1060 Score = 43.4 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 836 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 866 >gi|149732818|ref|XP_001500764.1| PREDICTED: ribonuclease type III, nuclear isoform 1 [Equus caballus] Length = 1374 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1333 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 963 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1082 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1083 LHPLQLQEPNTDRQLIETSPV 1103 Score = 43.4 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 879 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 909 >gi|8886722|gb|AAF80558.1|AF189011_1 ribonuclease III [Homo sapiens] Length = 1374 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1225 IAALYTDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1333 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 963 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDPFM 1022 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1082 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1083 LHPLQLQEPNTDRQLIETSPV 1103 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 879 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 909 >gi|77462220|ref|YP_351724.1| RNAse III [Rhodobacter sphaeroides 2.4.1] gi|126461082|ref|YP_001042196.1| ribonuclease III [Rhodobacter sphaeroides ATCC 17029] gi|221641174|ref|YP_002527436.1| Ribonuclease 3 [Rhodobacter sphaeroides KD131] gi|332560101|ref|ZP_08414423.1| ribonuclease III [Rhodobacter sphaeroides WS8N] gi|90101641|sp|Q3J5W1|RNC_RHOS4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043337|sp|A3PGF8|RNC_RHOS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807895|sp|B9KSA7|RNC_RHOSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|77386638|gb|ABA77823.1| RNAse III [Rhodobacter sphaeroides 2.4.1] gi|126102746|gb|ABN75424.1| RNAse III [Rhodobacter sphaeroides ATCC 17029] gi|221161955|gb|ACM02935.1| Ribonuclease 3 [Rhodobacter sphaeroides KD131] gi|332277813|gb|EGJ23128.1| ribonuclease III [Rhodobacter sphaeroides WS8N] Length = 229 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 85/214 (39%), Positives = 119/214 (55%), Gaps = 1/214 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + E RIG+ F L +A+THSS+S + +RLEFLGDR+LGL+++ L Sbjct: 1 MKLSADLKAFEGRIGHQFREPERLLRAVTHSSLSSVTRSDNQRLEFLGDRVLGLVMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 +A EG+L+ RFN+LV ETC+ VARE+ L +++ ++ D + Sbjct: 61 LAADRAASEGQLAPRFNALVRKETCAAVAREVALGDVLKLGRSEMMSGGRRKEALLGDAL 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+YLD G E A V + W R + + RDAKT LQEWA A+ P Y+ Sbjct: 121 EAVIAAVYLDAGFEAARQLVLRLWGARIAQVERDARDAKTALQEWAQARGLPPPTYEAVD 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 RSGPDH P FTV V + + +KR AEQ Sbjct: 181 RSGPDHAPIFTVEVRLGNGETDRAAAGTKRVAEQ 214 >gi|255066864|ref|ZP_05318719.1| ribonuclease III [Neisseria sicca ATCC 29256] gi|255048939|gb|EET44403.1| ribonuclease III [Neisseria sicca ATCC 29256] Length = 239 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 6/218 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++ ++GY F + +LL++ALTH S + ++ ER EF+GD IL ++ +LF+ F Sbjct: 12 AAIQNKLGYHFKDTALLQQALTHRSY---HAKNNERFEFVGDSILNYTVAKMLFDAFPKL 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 69 TEGELSRLRASLVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + +R + +D KT LQE A+ P+Y++ + G Sbjct: 129 SFDADFAEAEKVVRHLFAERVKRADFKTQGKDNKTALQEALQARRLALPKYRIEEQIGHA 188 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 +D F + ++ L + S++ AEQ AA E L+ Sbjct: 189 NDSMFLISCDLGELGFICKAQGSSRKVAEQQAAKEALQ 226 >gi|297675037|ref|XP_002815506.1| PREDICTED: ribonuclease 3-like [Pongo abelii] Length = 1374 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1333 Score = 48.4 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 963 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1082 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1083 LHPLQLQEPNTDRQLIETSPV 1103 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 879 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 909 >gi|114600815|ref|XP_526954.2| PREDICTED: ribonuclease III, nuclear isoform 11 [Pan troglodytes] gi|114600817|ref|XP_001157424.1| PREDICTED: ribonuclease III, nuclear isoform 4 [Pan troglodytes] gi|114600819|ref|XP_001157533.1| PREDICTED: ribonuclease III, nuclear isoform 6 [Pan troglodytes] gi|332821657|ref|XP_001157472.2| PREDICTED: ribonuclease 3 isoform 5 [Pan troglodytes] Length = 1374 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1333 Score = 48.4 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 963 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1082 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1083 LHPLQLQEPNTDRQLIETSPV 1103 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 879 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 909 >gi|155030234|ref|NP_037367.3| ribonuclease 3 isoform 1 [Homo sapiens] gi|20139357|sp|Q9NRR4|RNC_HUMAN RecName: Full=Ribonuclease 3; AltName: Full=Protein Drosha; AltName: Full=Ribonuclease III; Short=RNase III; AltName: Full=p241 Length = 1374 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1333 Score = 48.4 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 963 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1082 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1083 LHPLQLQEPNTDRQLIETSPV 1103 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 879 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 909 >gi|226943497|ref|YP_002798570.1| ribonuclease III [Azotobacter vinelandii DJ] gi|259491898|sp|C1DQS2|RNC_AZOVD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|226718424|gb|ACO77595.1| ribonuclease III [Azotobacter vinelandii DJ] Length = 229 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 74/217 (34%), Positives = 104/217 (47%), Gaps = 10/217 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + + LE+++G+ F N+ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSASLNRLERKLGHTFKNQDLMLLALTHRSFA---SRNNERLEFLGDAILNFVAGEALFE 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F AKEG+LS LV ET + +AR DL +R+ S K SI AD +E+ Sbjct: 58 RFPQAKEGQLSRLRARLVKGETLALLARGFDLGDHLRLGSGELKSGGFRRESILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD G+ V + +L +D KT LQE+ ++ P Y+V Sbjct: 118 LIGAIYLDAGLNTVRERVLGWLAGELDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVD 177 Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213 G H F V + + G S+R AEQ Sbjct: 178 IQGEPHCRTFFVECRVALLNDKTY--GQGASRRIAEQ 212 >gi|269215480|ref|ZP_06159334.1| ribonuclease III [Slackia exigua ATCC 700122] gi|269130967|gb|EEZ62042.1| ribonuclease III [Slackia exigua ATCC 700122] Length = 312 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 105/220 (47%), Gaps = 2/220 (0%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLF 60 + + + IG AF + +L A+TH S + + SYERLEFLGD ILG +++ F Sbjct: 8 SAKLDLAQHVIGVAFDDIDILLAAITHPSATEGKPVKFSYERLEFLGDSILGAIVANEAF 67 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + EG L+ +LVS + S VA +L A I S R + S +V E Sbjct: 68 HAYPEIDEGGLTRIKVALVSGSSLSDVAAKLGFADIIVFGSSERGTGRRGLHSALENVYE 127 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +L+AAL+LD G++ A FV + R + + + G+TP YK+ Sbjct: 128 ALVAALFLDKGMDGARDFVRRTLIPRMDIEMAREPENPKSALQEKLQEEGITPTYKLVET 187 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP HD F V A AQG+ +K+ +E AA L Sbjct: 188 QGPPHDRTFVSQVFAGLTALAQGIGRTKKESESQAAKAAL 227 >gi|114600825|ref|XP_001157646.1| PREDICTED: ribonuclease III, nuclear isoform 8 [Pan troglodytes] Length = 1343 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1075 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1134 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1135 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1193 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1194 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1253 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1254 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1302 Score = 48.0 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 932 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 991 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 992 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1051 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1052 LHPLQLQEPNTDRQLIETSPV 1072 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 848 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 878 >gi|254993548|ref|ZP_05275738.1| ribonuclease III [Listeria monocytogenes FSL J2-064] Length = 206 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 7/208 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S Sbjct: 1 MN--QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LFN + EG ++ ++V + + A + + ++R+ K ++ A Sbjct: 59 NYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEY 175 DV ES I ALYLD GI+ TF+++ + + D KT+LQE V EY Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQG 203 + +GP H+ F V ++G +G Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKG 206 >gi|227495870|ref|ZP_03926181.1| ribonuclease III [Actinomyces urogenitalis DSM 15434] gi|226834547|gb|EEH66930.1| ribonuclease III [Actinomyces urogenitalis DSM 15434] Length = 276 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 102/221 (46%), Gaps = 6/221 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 +L R G + LL+ ALTH S +H + ERLEFLGD +L ++++ LF Sbjct: 17 RTDLESLVYRWGCQIEDP-LLDLALTHRSWAHENGGLPTNERLEFLGDAVLQIIVTEDLF 75 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+L+ + VS + VAR+L L FI++ SI +D VE Sbjct: 76 RDHPEVPEGQLAKMRAATVSEPALAGVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVE 135 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178 +LI A YL G+E V + + ++ D KT LQE A +P Y+VT Sbjct: 136 ALIGATYLTVGLEPVREVVLRLVSRFLTEAPSRGAGLDWKTSLQELAAVHRLGSPSYRVT 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH FT V + G +G SK+ AE AA Sbjct: 196 SV-GPDHARVFTAVAVVDGQERGEGTGSSKKVAEHDAAEAA 235 >gi|300113378|ref|YP_003759953.1| ribonuclease III [Nitrosococcus watsonii C-113] gi|299539315|gb|ADJ27632.1| ribonuclease III [Nitrosococcus watsonii C-113] Length = 233 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 77/218 (35%), Positives = 115/218 (52%), Gaps = 8/218 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 L +++GY FA +LL A+TH S + + ERLEFLGD IL LI+ L++ Sbjct: 1 MTDDLGRLCQKLGYQFAEPALLRHAITHRSAAKE---NNERLEFLGDSILNFLIADFLYS 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS +LV ET +++AREL++ + + K TSI AD E+ Sbjct: 58 GFPKAQEGKLSRLRATLVKGETLAELARELEIGDHLILGLGELKSGGYRRTSILADAFEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK----FRRDAKTELQEWAHAKFGVTPEYKV 177 +I A+YLDGG+E V ++ R +D KT LQE+ A+ P+Y+V Sbjct: 118 VIGAVYLDGGLEACRQLVSSLYRDRLETLTDEVLLNLKDPKTRLQEYLQARQFPLPDYRV 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQV 214 + +G HD F V ++ P+ G+ S+R AEQ Sbjct: 178 SAVNGEAHDQVFQVECTLNNTFPSVIGIGRSRRKAEQD 215 >gi|241895655|ref|ZP_04782951.1| dsRNA-specific ribonuclease [Weissella paramesenteroides ATCC 33313] gi|241871022|gb|EER74773.1| dsRNA-specific ribonuclease [Weissella paramesenteroides ATCC 33313] Length = 232 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 10/228 (4%) Query: 6 YSTLEKRI----GYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIST 57 + L+ + F + LLE+ALT ++ + + Y+RLEFLGD ++ + Sbjct: 2 FKQLQADLATDHHIHFNDLKLLEEALTQANYINEHPGYKGGDYQRLEFLGDAVMQQSTAV 61 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF F + EG L+ S+V + ++REL L ++++ S+ D Sbjct: 62 YLFKRFPNWDEGRLTELRISMVQTRAFAALSRELHLDRYVQLGRGEELSGARNRDSLLED 121 Query: 118 VVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + E+ I AL+LD G EV F + + + D K++LQE+ V Y Sbjct: 122 LWEAFIGALFLDQGQEVVMNFLEEMMFVKIDEGFYDQFVDYKSKLQEYLQRHGTVKIAYT 181 Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +++ FT+ V + G A G S + AE++AA + + Sbjct: 182 KLDEQAISNNEQVFTIQVSVDGKPLATGEGKSTKDAEKMAARKAYQSL 229 >gi|111023481|ref|YP_706453.1| ribonuclease III [Rhodococcus jostii RHA1] gi|110823011|gb|ABG98295.1| ribonuclease III [Rhodococcus jostii RHA1] Length = 252 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 7/225 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 +++L +G SLL ALTH S ++ + ERLEFLGD +LG+ ++ L+ Sbjct: 15 DHASLLAALGVEIE-PSLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTEKLYLA 73 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---RKDVCSFMTSIQADVV 119 EG+L+ S+V+ ++VAR L SI AD + Sbjct: 74 HPDKSEGDLAKIRASIVNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADGM 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVT 178 ES++ A++L+ GI+ A V + ++ + + A+ GV Sbjct: 134 ESILGAIHLEHGIDTARRVVLDLFSDLLQRAPRLGAGLDWKTSLQELTAERGVGVPAYEI 193 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GPDHD FT V + G G+ SK+ AEQ AA+ Sbjct: 194 TATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAASTAWNAL 238 >gi|114600823|ref|XP_001157589.1| PREDICTED: ribonuclease III, nuclear isoform 7 [Pan troglodytes] Length = 1382 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1114 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1173 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1174 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1232 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1233 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1292 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1293 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1341 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 971 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1030 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 1031 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1090 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1091 LHPLQLQEPNTDRQLIETSPV 1111 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 879 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 909 >gi|296111745|ref|YP_003622127.1| dsRNA-specific ribonuclease RNaseIII [Leuconostoc kimchii IMSNU 11154] gi|295833277|gb|ADG41158.1| dsRNA-specific ribonuclease RNaseIII [Leuconostoc kimchii IMSNU 11154] Length = 233 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 91/230 (39%), Gaps = 7/230 (3%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + L F N LL +ALT + + + + Y+RLEFLGD ++ + + Sbjct: 1 MPQDSFKQHLLSEFNIQFHNEELLREALTQRNYLNEHPDEPGRDYQRLEFLGDSVMQVSV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + LF + S EG+L+ ++V + + +R L IR+ S+ Sbjct: 61 AEYLFKRYPSWHEGQLTEMRIAMVQTRSFAHFSRVAHLNEGIRLGKGEEMSGARDRDSLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ I ALYLD G E TF+D+ R + K G Sbjct: 121 EDIWEAFIGALYLDQGSEAVRTFLDQTLFAAIDTDFFDRFIDFKSRLQEKLQKNGAVDIA 180 Query: 176 KVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T ++ F V + A+G S + AE+VAA LK Sbjct: 181 YRTESEKQMIGNEQLFEASVSVDNRELARGTGKSIKDAEKVAARAALKLL 230 >gi|323499981|ref|ZP_08104937.1| ribonuclease III [Vibrio sinaloensis DSM 21326] gi|323314947|gb|EGA68002.1| ribonuclease III [Vibrio sinaloensis DSM 21326] Length = 225 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 109/213 (51%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ + LEK++GY F + L+ ALTH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIAKLEKKLGYQFNDAELIGLALTHRSA---NGKHNERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE +L +++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD IE + ++K R ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDIEEVRRIILSWYKTRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ FTV E++G+ P G S+R Sbjct: 177 NIKGEAHNQEFTVSCEVAGIGQPVIGKGTSRRK 209 >gi|300172910|ref|YP_003772075.1| ribonuclease III [Leuconostoc gasicomitatum LMG 18811] gi|299887288|emb|CBL91256.1| Ribonuclease III [Leuconostoc gasicomitatum LMG 18811] Length = 233 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 7/230 (3%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 MS + L F + SLL++ALT + + +Q+ Y+RLEFLGD ++ + + Sbjct: 1 MSQDSFKKYLLTEFNIQFNDDSLLQEALTQRNYLNEHQDESGRDYQRLEFLGDSVMQVSV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + LF + + EG+L+ ++V + + +R + L IR+ S+ Sbjct: 61 AEYLFKRYPNWHEGQLTEMRIAMVQTRSFAHFSRVVHLNEGIRLGKGEEMSGARDRDSLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ I ALYLD G+E F+D+ R + K G Y Sbjct: 121 EDIWEAFIGALYLDQGLEAVSVFLDQTLFAAIDTDFFDRFIDFKSRLQEKLQKNGAVDIY 180 Query: 176 KVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T P + F + + A+G S + AE+ AA LK Sbjct: 181 YRTESEQPLAGNTQLFEASISVDDHELARGTGKSIKDAEKAAARTALKLL 230 >gi|296194850|ref|XP_002745134.1| PREDICTED: ribonuclease 3 isoform 1 [Callithrix jacchus] Length = 1374 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1224 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1333 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 963 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1082 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1083 LHPLQLQEPNTDRQLIETSPV 1103 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 879 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 909 >gi|320161647|ref|YP_004174872.1| ribonuclease III [Anaerolinea thermophila UNI-1] gi|319995501|dbj|BAJ64272.1| ribonuclease III [Anaerolinea thermophila UNI-1] Length = 237 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 5/225 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63 R+G +F + LL +ALTH S + + E ERLEFLGD +L ++ L+N + Sbjct: 11 QEFANRLGLSFKSFFLLSRALTHRSYLNEHPEAIEDNERLEFLGDAVLDFVVGAWLYNRY 70 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ + LVS E S+ AR++DL +R+ + ++ D E++I Sbjct: 71 PDMPEGDLTRMRSVLVSTEQLSEFARKVDLGRALRLGKGETQAGGRDRPALLCDAFEAVI 130 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD GIE F++ ++ A + + D K+ LQEWA + P Y V S Sbjct: 131 GAIYLDSGIEGVRRFIEPMLEKAADEILARQTIEDPKSMLQEWAQGQGFQAPRYIVRSSS 190 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GP+H +F V V I+G G+ SK+AA + AAA+ LKR G+ Sbjct: 191 GPEHSKQFEVDVLINGQIYGSGIGSSKQAATKAAAADALKRLGLL 235 >gi|172040468|ref|YP_001800182.1| ribonuclease III [Corynebacterium urealyticum DSM 7109] gi|171851772|emb|CAQ04748.1| ribonuclease III [Corynebacterium urealyticum DSM 7109] Length = 245 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 4/225 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLL 59 S ++ L + G ++ +L ALTH S +H + ERLEFLGD +LGL ++ L Sbjct: 18 SKHDHAPLLEAWGIELSD-EMLRLALTHRSFAHENDNVPNNERLEFLGDAVLGLSVAEQL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F E ++S +V+ + +AR L L +I + K SI AD V Sbjct: 77 YTQFPQRSESDISKMRAGVVNMYALAGLARNLGLGEYILLGRGEMKTDGQDKDSILADTV 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVT 178 E+++ A+YL+ G VA V + +K K+ + + + Sbjct: 137 EAILGAIYLEHGFAVAKATVLRLFKSMIDKAPTVGLTMDWKTTVQERLREHDLPMPEYEV 196 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP+HD F +++ G +G +K+ AE AA +++ Sbjct: 197 TSSGPEHDKAFFATLKLDGKERTRGQGRTKKEAEHQAARAMVEEL 241 >gi|170594121|ref|XP_001901812.1| RNase3 domain containing protein [Brugia malayi] gi|158590756|gb|EDP29371.1| RNase3 domain containing protein [Brugia malayi] Length = 1329 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 11/228 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + LEK IG F + +L KA T + ++ +RLEFLGD +L L+ + L+ HF Sbjct: 1017 LTELEKNIGITFKHIRVLAKAFTRRNIGFNNLTLGHNQRLEFLGDTVLQLITTDYLYKHF 1076 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-MTSIQADVVESL 122 EG LS+ LVS T S + ++ + ++ ++K +AD+VE+ Sbjct: 1077 PYHHEGHLSILRTCLVSNRTQSVICDDIGMTKYLVTPKVMQKSGMPVLRVKDKADLVEAF 1136 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV------TPE 174 + ALY+D G + F + R + D K++LQ+ + PE Sbjct: 1137 LGALYVDRGFDYCKVFCRICFFPRLKFFIIAQHWNDPKSQLQQCCLTLRQMDGGEPDIPE 1196 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+ GP + + V V A G + + A+ AA L + Sbjct: 1197 YRTIAVEGPTNTRIYKVAVYFRKKRLAVGCGHTMQLAQMRAAENALIK 1244 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 52/115 (45%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 S ERLEFLGD ++ + + LF F EG L+ +++V + + +A+ Sbjct: 864 KKAEQSPLNHNERLEFLGDAVIEFITTIHLFYMFSELDEGGLATYRSTMVQNKNLALLAK 923 Query: 90 ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 ++ L F+ + S + A+ E+++AA+YLD GI+ Sbjct: 924 KIGLDEFMLYAHGPDLCHESDLRHAMANAFEAMMAAIYLDAGIDECDRIFGHAMF 978 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/30 (53%), Positives = 20/30 (66%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQES 39 ++RI Y F NRSLLE ALTH S +Y + Sbjct: 786 QERIHYVFKNRSLLELALTHPSYRTNYGTN 815 >gi|119631172|gb|EAX10767.1| ribonuclease III, nuclear, isoform CRA_a [Homo sapiens] gi|119631173|gb|EAX10768.1| ribonuclease III, nuclear, isoform CRA_a [Homo sapiens] Length = 1349 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1081 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1140 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1141 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1199 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1200 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1259 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1260 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1308 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 938 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 997 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 998 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1057 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1058 LHPLQLQEPNTDRQLIETSPV 1078 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 854 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 884 >gi|226365983|ref|YP_002783766.1| ribonuclease III [Rhodococcus opacus B4] gi|226244473|dbj|BAH54821.1| ribonuclease III [Rhodococcus opacus B4] Length = 252 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 7/225 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 +++L +G SLL ALTH S ++ + ERLEFLGD +LG+ ++ L+ Sbjct: 15 DHASLLAALGVEIE-PSLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTEKLYLA 73 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---RKDVCSFMTSIQADVV 119 EG+L+ S+V+ ++VAR L SI AD + Sbjct: 74 HPDKSEGDLAKIRASIVNMHALAEVARSLGEGGLGAHLLLGKGEEMTGGRDKPSILADGM 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVT 178 ES++ A++L+ GI+ A V + ++ + + A+ GV Sbjct: 134 ESILGAIHLEHGIDTARRVVLDLFSDLLQRAPRLGAGLDWKTSLQELTAERGVGVPAYEI 193 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GPDHD FT V + G G+ SK+ AEQ AA+ Sbjct: 194 TATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAASTAWNAL 238 >gi|170720259|ref|YP_001747947.1| ribonuclease III [Pseudomonas putida W619] gi|229564376|sp|B1J4E0|RNC_PSEPW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|169758262|gb|ACA71578.1| Ribonuclease III [Pseudomonas putida W619] Length = 229 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 72/217 (33%), Positives = 107/217 (49%), Gaps = 10/217 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + + LE+++GY F ++ + ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSASLARLERKLGYTFKDQDQMVLALTHRSYA---GRNNERLEFLGDAILNFVAGEALFE 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS LV ET +++AR DL ++R+ S K SI AD +E+ Sbjct: 58 RFPQAREGQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+YLD ++ A V + +D KT LQE+ ++ P Y+V Sbjct: 118 LIGAIYLDADMQTARERVLAWLTDEFESLTLVDTNKDPKTRLQEFLQSRSCELPRYEVVD 177 Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213 G H F V E+ + ++G S+R AEQ Sbjct: 178 IQGEPHCRTFFVECEVVLLNNK--SRGQGVSRRIAEQ 212 >gi|81428322|ref|YP_395322.1| ribonuclease (RNase III) [Lactobacillus sakei subsp. sakei 23K] gi|90101628|sp|Q38XR8|RNC_LACSS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|78609964|emb|CAI55011.1| Ribonuclease (RNase III) [Lactobacillus sakei subsp. sakei 23K] Length = 230 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 100/212 (47%), Gaps = 5/212 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M A S L R G F N +LL++A THSS + ++E ERLEFLGD ++ + +S Sbjct: 1 MDAALVSELRARYGIEFNNLALLDEAFTHSSYVNEHRELGLRDNERLEFLGDAVMEITVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + EG+L+ ++V ++ S ++E +IR+ K+ ++ Sbjct: 61 EYLYKKYPDWPEGKLTRLRAAIVCTKSFSSFSKEAHFDRYIRLGKGEEKNGARARATLLE 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ AL+LD G + FV + + + D KT LQE+ + +Y Sbjct: 121 DLFEAFNGALFLDQGRDAVVDFVSQVIFPKIEAGEFSDQTDYKTNLQEFLQQDGEIEIDY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 ++ GP HD +F V V + G+ + Sbjct: 181 QLLAEVGPSHDRQFEVDVLVGDRVLGSGVGRN 212 >gi|254524282|ref|ZP_05136337.1| ribonuclease III [Stenotrophomonas sp. SKA14] gi|219721873|gb|EED40398.1| ribonuclease III [Stenotrophomonas sp. SKA14] Length = 226 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 73/217 (33%), Positives = 110/217 (50%), Gaps = 7/217 (3%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 IG+ F + +LL++ALTH S ERLEFLGD I+ ++ + L+ + A EG Sbjct: 10 DLIGHPFRDAALLKQALTHRSAG---APHNERLEFLGDSIVNMMAAEALYRRWPKADEGA 66 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 ++ LV + + R L+L + + K SI AD VE+++AA+YLD Sbjct: 67 MTRARAELVREGALAVIGRSLELGERLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDA 126 Query: 131 GIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G E V ++ + SG+ +D KT LQEW A+ P+Y++ SG DH Sbjct: 127 GFEACRAVVLPWFSASIEALPASGRPEKDPKTRLQEWLQARQKALPQYELVSESGDDHAK 186 Query: 188 RFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V ++ A +G S+R AEQ AAA VL++ Sbjct: 187 HFRVRCNVADPAASTEGEGASRRLAEQQAAAAVLEQL 223 >gi|70728453|ref|YP_258202.1| ribonuclease III [Pseudomonas fluorescens Pf-5] gi|68342752|gb|AAY90358.1| ribonuclease III [Pseudomonas fluorescens Pf-5] Length = 225 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 76/212 (35%), Positives = 108/212 (50%), Gaps = 10/212 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE+++GY+F ++ L+ ALTH S + + ERLEFLGD IL + LF F A Sbjct: 2 SRLERQLGYSFKDQELMLLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFERFPQA 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG+LS LV ET + +AR DL ++R+ S K SI AD +E+LI A+ Sbjct: 59 REGQLSRLRARLVKGETLAVLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 118 Query: 127 YLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G+E A V + +D KT LQE+ ++ P Y+V G Sbjct: 119 YLDAGMETARDRVLSWLASEFESLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEP 178 Query: 185 HDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213 H F V E+ + ++G S+R AEQ Sbjct: 179 HCRTFFVECEVTLLNEK--SRGQGVSRRIAEQ 208 >gi|40455575|gb|AAR85911.1| ribonuclease III-like protein [Rattus norvegicus] Length = 288 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 20 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 79 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 80 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 138 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 139 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 198 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 199 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 247 >gi|148272538|ref|YP_001222099.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830468|emb|CAN01403.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 238 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 93/207 (44%), Gaps = 3/207 (1%) Query: 20 RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 LLE ALTH S ++ + ERLEFLGD ILG ++ +L+ EGEL+ R S Sbjct: 26 PELLELALTHRSYAYEHGGIPHNERLEFLGDSILGQAVTVMLYLENPDLDEGELAKRRAS 85 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 LVS+ ++VA + L + + +SI AD VE++I A YLD G E A Sbjct: 86 LVSSVALAEVATRIGLGEHLLLGRGEELTGGRAKSSILADTVEAIIGASYLDAGGEAATG 145 Query: 138 FVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 V + +F + + A+ G+ SGPDH RF VV + Sbjct: 146 LVLRLIAPLLEDPARFGAAMDPKTALQESAARQGLPAPVYDVSDSGPDHSKRFHAVVTVG 205 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ AE AA E R Sbjct: 206 DAVRTTGEGSSKKQAEMTAALEAWTRL 232 >gi|170781177|ref|YP_001709509.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus] gi|169155745|emb|CAQ00866.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus] Length = 238 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 93/207 (44%), Gaps = 3/207 (1%) Query: 20 RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 LLE ALTH S ++ + ERLEFLGD ILG ++ +L+ EGEL+ R S Sbjct: 26 PELLELALTHRSYAYEHGGIPHNERLEFLGDSILGQAVTVMLYLENPDLDEGELAKRRAS 85 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 LVS+ ++VA + L + + +SI AD VE++I A YLD G E A Sbjct: 86 LVSSVALAEVATRIGLGEHLLLGRGEELTGGRAKSSILADTVEAIIGASYLDAGGEAATG 145 Query: 138 FVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 V + +F + + A+ G+ SGPDH RF VV + Sbjct: 146 LVLRLIAPLLEDPARFGAAMDPKTALQESAARQGLPAPAYDVSDSGPDHSKRFHAVVTVG 205 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ AE AA E R Sbjct: 206 DAVRTTGEGSSKKQAEMTAALEAWTRL 232 >gi|104783263|ref|YP_609761.1| ribonuclease III [Pseudomonas entomophila L48] gi|122402118|sp|Q1I5V8|RNC_PSEE4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|95112250|emb|CAK16977.1| ribonuclease III, ds RNA [Pseudomonas entomophila L48] Length = 229 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 72/215 (33%), Positives = 106/215 (49%), Gaps = 6/215 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + LE+++GY F N+ + ALTH S + + ERLEFLGD IL ++ LF Sbjct: 1 MSASLDRLERKLGYTFKNQDQMLLALTHRSYA---GRNNERLEFLGDAILNFVVGEALFE 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS LV ET +++AR DL ++R+ S K SI AD +E+ Sbjct: 58 RFPQAREGQLSRLRARLVKGETLARLARGFDLGDYLRLGSGELKSGGFRRESILADALEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 LI A+Y D ++ A + + +D KT LQE+ ++ P Y+V Sbjct: 118 LIGAIYQDADMQTARERILAWLTDEFDGLTLVDTNKDPKTRLQEFLQSRACELPRYEVVD 177 Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V E+ L ++G S+R AEQ Sbjct: 178 IQGEPHCRTFFVECEVVLLNKKSRGQGVSRRIAEQ 212 >gi|126321160|ref|XP_001375491.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 1388 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1108 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1167 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1168 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1226 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1227 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1286 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1287 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1335 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 965 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1024 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 1025 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDKDLREVWLNYP 1084 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1085 LHPLQLQEPNTDRQLIETSPV 1105 Score = 43.4 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 881 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 911 >gi|320352215|ref|YP_004193554.1| RNAse III [Desulfobulbus propionicus DSM 2032] gi|320120717|gb|ADW16263.1| RNAse III [Desulfobulbus propionicus DSM 2032] Length = 243 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 66/209 (31%), Positives = 105/209 (50%), Gaps = 5/209 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNH 62 L++RIGY F + LL+ +L HSS + E EFLGD +L L + +LF Sbjct: 16 LHELQERIGYRFRDLRLLQLSLIHSSFAFERLDDGRHNETQEFLGDAVLDLTVGYILFVR 75 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F +EG+L+ ++LV+ + + ARE+DL ++ + +SI + E+L Sbjct: 76 FPEMREGKLTRIRSALVNEQGLADRAREIDLGKYLLLGKGENASNGRDKSSILSCAYEAL 135 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFR 180 + AL+LDGG + A FV ++++ + + DAK+ LQE +F PEY +T Sbjct: 136 VGALFLDGGYDQALAFVRRFFEPHIDQHQEQLVSADAKSSLQELLQERFNEGPEYMLTGE 195 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H F++ V G G SK+ Sbjct: 196 EGPAHARLFSITVTFQGEELGSGRASSKK 224 >gi|297294058|ref|XP_001085611.2| PREDICTED: ribonuclease 3 isoform 1 [Macaca mulatta] Length = 1337 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1187 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1247 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1248 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1296 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 926 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 986 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1045 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1046 LHPLQLQEPNTDRQLIETSPV 1066 Score = 43.4 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 842 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 872 >gi|145219011|ref|YP_001129720.1| RNAse III [Prosthecochloris vibrioformis DSM 265] gi|145205175|gb|ABP36218.1| RNAse III [Chlorobium phaeovibrioides DSM 265] Length = 259 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 7/216 (3%) Query: 11 KRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +G + ALTH S H S +RLEFLGD ILGL+I+ LF Sbjct: 36 RLLGRKPGDMRFYTTALTHRSAVHDPSTPLNTHSNQRLEFLGDAILGLVITDYLFRELPD 95 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + EGELS +V+ ++ + AR + + + + S AD +E+ I A Sbjct: 96 SPEGELSNTRAKIVNRKSLAGFARSIKIGDHLILGESADHAKIRVSESTLADALEAFIGA 155 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ++LD GI A +F++++ + + + K+ L E A P Y V G Sbjct: 156 IWLDRGISAATSFINEHVIEHRRFNTLITAENNHKSRLIEHTQALHLPPPRYSVISEEGA 215 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +H+ RFTV V +G +G+ K+ AEQ AAAE Sbjct: 216 EHEKRFTVEVSCNGKVLGRGIAARKKDAEQHAAAEA 251 >gi|297463231|ref|XP_002702571.1| PREDICTED: ribonuclease III, nuclear [Bos taurus] gi|297487774|ref|XP_002696435.1| PREDICTED: ribonuclease III, nuclear-like isoform 1 [Bos taurus] gi|296475747|gb|DAA17862.1| ribonuclease III, nuclear-like isoform 1 [Bos taurus] Length = 1367 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1099 KLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1158 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1159 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1217 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1218 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1277 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1278 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1326 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 956 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1015 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 1016 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1075 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1076 LHPLQLQEPNTDRQLIETSPV 1096 Score = 43.4 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 872 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 902 >gi|149732820|ref|XP_001500777.1| PREDICTED: ribonuclease type III, nuclear isoform 2 [Equus caballus] Length = 1337 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1187 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1247 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1248 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1296 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 926 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 986 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1045 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1046 LHPLQLQEPNTDRQLIETSPV 1066 Score = 43.0 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 842 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 872 >gi|296194852|ref|XP_002745135.1| PREDICTED: ribonuclease 3 isoform 2 [Callithrix jacchus] Length = 1337 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1187 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1247 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1248 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1296 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 926 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 986 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1045 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1046 LHPLQLQEPNTDRQLIETSPV 1066 Score = 43.0 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 842 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 872 >gi|254511570|ref|ZP_05123637.1| ribonuclease III [Rhodobacteraceae bacterium KLH11] gi|221535281|gb|EEE38269.1| ribonuclease III [Rhodobacteraceae bacterium KLH11] Length = 225 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 1/209 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + ++R+GY F++ LL ++LTH S+S S + +RLEFLGDR+LGL+++T L Sbjct: 1 MKLSAEIKAFQQRLGYEFSDPELLVRSLTHGSVSSSTRPDNQRLEFLGDRVLGLVMATAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 A EG+L+ RFN+LV E C+ VAR++DL + +++ ++ D + Sbjct: 61 LEADKKASEGQLAPRFNALVRKEACADVARQIDLGAVLKLGRSEMLSGGRRKQALLGDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+Y D G E A + W R RDAKT LQEWA A+ P Y Sbjct: 121 EAVIAAIYRDAGFEAARDVILALWGDRIHMVEADARDAKTSLQEWAQARGQKPPAYVEVK 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 R+GPDH P FT+ + AQ SK Sbjct: 181 RTGPDHAPVFTIAARLQDGTEAQATAGSK 209 >gi|155030236|ref|NP_001093882.1| ribonuclease 3 isoform 2 [Homo sapiens] gi|114600827|ref|XP_001157762.1| PREDICTED: ribonuclease 3 isoform 10 [Pan troglodytes] Length = 1337 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1187 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1247 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1248 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1296 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 926 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 986 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1045 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1046 LHPLQLQEPNTDRQLIETSPV 1066 Score = 43.0 bits (99), Expect = 0.029, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 842 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 872 >gi|194306545|ref|NP_081075.3| ribonuclease 3 [Mus musculus] gi|194328670|ref|NP_001123621.1| ribonuclease 3 [Mus musculus] gi|81882947|sp|Q5HZJ0|RNC_MOUSE RecName: Full=Ribonuclease 3; AltName: Full=Protein Drosha; AltName: Full=Ribonuclease III; Short=RNase III gi|57242920|gb|AAH88999.1| Rnasen protein [Mus musculus] gi|74184402|dbj|BAE25729.1| unnamed protein product [Mus musculus] gi|74215950|dbj|BAE28629.1| unnamed protein product [Mus musculus] Length = 1373 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1105 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1164 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1165 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1223 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1224 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1283 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1284 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1332 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 962 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1021 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 1022 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1081 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1082 LHPLQLQEPNTDRQLIETSPV 1102 Score = 43.0 bits (99), Expect = 0.029, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 878 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 908 >gi|114600829|ref|XP_001157712.1| PREDICTED: ribonuclease III, nuclear isoform 9 [Pan troglodytes] Length = 1306 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1038 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1097 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1098 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1156 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1157 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1216 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1217 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1265 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 895 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 954 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 955 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1014 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1015 LHPLQLQEPNTDRQLIETSPV 1035 Score = 43.0 bits (99), Expect = 0.029, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 811 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 841 >gi|254507535|ref|ZP_05119669.1| ribonuclease III [Vibrio parahaemolyticus 16] gi|219549605|gb|EED26596.1| ribonuclease III [Vibrio parahaemolyticus 16] Length = 225 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 111/213 (52%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ + LEK++GY F + L+ ALTH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIAKLEKKVGYQFNDAELINLALTHRSA---NGKHNERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE +L +++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD IEV + + +++ R ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDIEVVRSIILSWYQSRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ FTV E++G+ P G S+R Sbjct: 177 NIKGEAHNQEFTVSCEVAGIGQPVIGKGTSRRK 209 >gi|83814847|ref|YP_445467.1| ribonuclease III [Salinibacter ruber DSM 13855] gi|83756241|gb|ABC44354.1| ribonuclease III [Salinibacter ruber DSM 13855] Length = 248 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 100/226 (44%), Gaps = 6/226 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 + + +E+ +G + S +ALTH S+ + S ERLEFLGD +L + + +L Sbjct: 16 VDPAAIEQLVGRPVDDLSHYRRALTHRSLLRVHPARTFRSNERLEFLGDALLDVFVGEVL 75 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F EG L+ LVS + AR L L + +S + + SI AD Sbjct: 76 YDRFPEKDEGALTRLRARLVSERPLATYARGLGLGPHLLMSENAAEGDGRDNPSILADAF 135 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + A+YLD G E A FV + K++L E A P Y V Sbjct: 136 EAFVGAVYLDLGHEAARGFVQDRVLAPVDLEDVATRDDNYKSQLLEHLQALGRPQPTYHV 195 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP HD FTV V + A +G SK+ AEQ AA L Sbjct: 196 VEEKGPSHDKTFTVEVRVGDAAYERGTAGSKQDAEQQAARRTLDEM 241 >gi|262273710|ref|ZP_06051523.1| ribonuclease III [Grimontia hollisae CIP 101886] gi|262222125|gb|EEY73437.1| ribonuclease III [Grimontia hollisae CIP 101886] Length = 224 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 74/207 (35%), Positives = 110/207 (53%), Gaps = 6/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L++RIGY F + +LL ALTH S S ERLEFLGD IL +++ L++ F + Sbjct: 6 NRLQRRIGYTFNDTTLLSLALTHRSAS---GNHNERLEFLGDSILSFVVADDLYHRFPNV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV T +++ RE +L +++ K SI AD VE++I A+ Sbjct: 63 DEGDMSRMRATLVRGNTLAELGREFELGDVLQLGPGELKSGGFRRDSILADAVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E V ++KQR ++D KT LQE+ + P Y VT G Sbjct: 123 YLDSSLETVRGIVLNWYKQRLETIQPGANQKDPKTRLQEFLQGRRKPLPAYNVTKVQGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210 H+ +FTV E++GL P G S+R Sbjct: 183 HNQQFTVECEVAGLDRPVVGKGSSRRK 209 >gi|298245671|ref|ZP_06969477.1| ribonuclease III [Ktedonobacter racemifer DSM 44963] gi|297553152|gb|EFH87017.1| ribonuclease III [Ktedonobacter racemifer DSM 44963] Length = 251 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 109/223 (48%), Gaps = 4/223 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 LE + F +RSLL +A+TH S ++SY+ LEFLGD I+ + ++ Sbjct: 9 NLLALEALLQVTFHDRSLLLRAITHHSCCTETALRDSYDTLEFLGDAIISAHVVEYIYRS 68 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL-RKDVCSFMTSIQADVVES 121 F +A EG+++ + +VS + + ++L L FIRV R S+ ADV+E+ Sbjct: 69 FPNASEGDMTALKSEVVSRRVFALIGQQLGLFPFIRVDIANLRTFNERSRDSLCADVLEA 128 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 L+ A+++D G EVA FV + + + + K LQ+ + G P Y+V + Sbjct: 129 LVGAIHIDQGSEVARDFVARAILPMVEQISVQADTNPKGRLQKIILQRTGSLPRYRVLEQ 188 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SG ++D F V V G S + A ++AA E L+ Sbjct: 189 SGRNNDRIFLVGVYDQETLLGLGKASSIKEAGRLAAREALEAL 231 >gi|71064909|ref|YP_263636.1| ribonuclease III [Psychrobacter arcticus 273-4] gi|90101639|sp|Q4FUV6|RNC_PSYA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71037894|gb|AAZ18202.1| RNAse III [Psychrobacter arcticus 273-4] Length = 265 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 110/224 (49%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 R + L +++GY F + SL + ALTH S +++YERLEFLGD +LG+++ L++ + Sbjct: 33 RLAVLTRKLGYVFNDLSLAKLALTHRSFDS--KKNYERLEFLGDALLGMIVGEALYHRYP 90 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG L+ +LV E+ +A+ L+L++ + + RK SI AD VESLI Sbjct: 91 TQNEGRLTRMRATLVRQESLVIIAQNLELSNQLILGVGERKGGGRNRASILADAVESLIG 150 Query: 125 ALYLDGGIEVAGTFV---DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD + K +DAK+ LQEW +K P Y++ Sbjct: 151 AIYLDSQDMNITRECVLSWYGDLIDNVNDQKALKDAKSRLQEWLQSKQFDLPHYELMETR 210 Query: 182 GPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G F V +++ S+R AEQ AA ++ + Sbjct: 211 GNAPHQLFVVRCQVNIINCPDITESGESRRIAEQKAAELMINQL 254 >gi|37994704|gb|AAH60265.1| Rnasen protein [Mus musculus] Length = 1231 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 963 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1022 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1023 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1081 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1082 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1141 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1142 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1190 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 820 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 879 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 880 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 939 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 940 LHPLQLQEPNTDRQLIETSPV 960 Score = 43.0 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 736 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 766 >gi|323491198|ref|ZP_08096384.1| ribonuclease III [Vibrio brasiliensis LMG 20546] gi|323314566|gb|EGA67644.1| ribonuclease III [Vibrio brasiliensis LMG 20546] Length = 225 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 111/213 (52%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ + LEK++GY F + L+ ALTH S + + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIAKLEKKLGYQFNDAELISLALTHRSA---HGKHNERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ RE +L +++ K SI AD VE Sbjct: 57 HRFPKVNEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD IEV + ++K R ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYLDSDIEVVRGIILSWYKTRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ FTV +++G+ P G S+R Sbjct: 177 NIKGEAHNQEFTVSCDVAGIGQPVIGKGTSRRK 209 >gi|294507352|ref|YP_003571410.1| Ribonuclease III [Salinibacter ruber M8] gi|294343680|emb|CBH24458.1| Ribonuclease III [Salinibacter ruber M8] Length = 243 Score = 118 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 99/226 (43%), Gaps = 6/226 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 + + +E+ +G + S +ALTH S+ + S ERLEFLGD +L + + +L Sbjct: 11 VDPAAIEQLVGRPVDDLSHYRRALTHRSLLRVHPARTFRSNERLEFLGDALLDVFVGEVL 70 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F EG L+ LVS + AR L L + +S + + SI AD Sbjct: 71 YDRFPEKDEGALTRLRARLVSERPLATYARGLGLGPHLLMSENAAEGDGRDNPSILADAF 130 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ + A+YLD G E A FV + K++L E A P Y V Sbjct: 131 EAFVGAVYLDLGHEAARGFVQDRVLAPVDLEDVATRDDNYKSQLLEHLQALGRPQPTYHV 190 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP HD FTV V + +G SK+ AEQ AA L Sbjct: 191 VEEKGPSHDKTFTVEVRVGDADYERGTAGSKQDAEQQAARRTLDEM 236 >gi|163846691|ref|YP_001634735.1| ribonuclease III [Chloroflexus aurantiacus J-10-fl] gi|222524496|ref|YP_002568967.1| Ribonuclease III [Chloroflexus sp. Y-400-fl] gi|254807243|sp|A9WJ69|RNC_CHLAA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807245|sp|B9LB70|RNC_CHLSY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|163667980|gb|ABY34346.1| Ribonuclease III [Chloroflexus aurantiacus J-10-fl] gi|222448375|gb|ACM52641.1| Ribonuclease III [Chloroflexus sp. Y-400-fl] Length = 244 Score = 118 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 7/212 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS------YQESYERLEFLGDRILGLLI 55 + R + LE+ IG F +R+LL+ A H S+ + + ERLEFLGD +L + Sbjct: 1 MSDRLAELERAIGITFRDRTLLQTAFMHRSLFNEQPHLLNHLTDNERLEFLGDSVLHFVT 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 +T LF F E L+ +LVS + ++ A + +L + +S + Sbjct: 61 TTWLFETFPDQDEATLTNWRAALVSTKGLAECAAQFNLGQYAYLSRGEDNPGGRSRQKLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 AD+ E+L+ A+YLD G+E A F+ +W+ R + D T LQE A+F P+Y Sbjct: 121 ADLFEALVGAIYLDQGLETARAFIVPFWQARIEQIIHIDLDPTTRLQELMQARFKQLPDY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + GP+H + + V ++G G S Sbjct: 181 SIEEERGPEHQREYVMAVTVAGRKF-TGSGSS 211 >gi|159898112|ref|YP_001544359.1| ribonuclease III [Herpetosiphon aurantiacus ATCC 23779] gi|159891151|gb|ABX04231.1| Ribonuclease III [Herpetosiphon aurantiacus ATCC 23779] Length = 234 Score = 118 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 66/209 (31%), Positives = 106/209 (50%), Gaps = 5/209 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLL 59 + + L+ +GY F + + L A+ H S H + ES ERLEFLGD +L + + L Sbjct: 1 MDLNKLQAELGYTFNDLNFLRAAMLHRSYVHEHPEAGSESNERLEFLGDALLNFICGSFL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F+ F EG+L+ LV T + +AR +L S++++S + ++ AD Sbjct: 61 FHEFPELGEGDLTKTRAMLVQTRTLAGLARRFNLGSYVQISRGEERAKARERDNLLADAF 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+L+AA+ LDGG E A FV K + +D KT+LQ++ + +TP Y+ Sbjct: 121 EALLAAIALDGGWEAARNFVLPLLKSVKASGVQ-NQDYKTDLQQYVQGRINLTPSYREVN 179 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 +GPDH+ +T+ V G+ SK Sbjct: 180 VTGPDHERTWTIEVWAGDALLGVGVGTSK 208 >gi|291456081|ref|ZP_06595471.1| ribonuclease III [Bifidobacterium breve DSM 20213] gi|291382490|gb|EFE90008.1| ribonuclease III [Bifidobacterium breve DSM 20213] Length = 247 Score = 118 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 97/230 (42%), Gaps = 10/230 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + L + +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF Sbjct: 18 NELLEALGTTIS-PDLLVQALTHRSFSHEHPGVSNYERLEFLGDAVLELVTTETLFTIHP 76 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS + S +A+ +L + +I + + + SI D+VESLI Sbjct: 77 DMNEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 136 Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +L+ GI+ A + + A + + G SG Sbjct: 137 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHHLGKAEPVYHMEVSG 196 Query: 183 PDHDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAAA---EVLKREGIWT 227 P++ FT V + G SKR A+ AA + L T Sbjct: 197 PEYAQIFTAKVTLGDNPEIIGTGKGSSKRKAQLAAAEAGWKALDALKTRT 246 >gi|298381809|ref|ZP_06991408.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli FVEC1302] gi|298279251|gb|EFI20765.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli FVEC1302] Length = 215 Score = 118 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 70/205 (34%), Positives = 106/205 (51%), Gaps = 6/205 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L++ F E Sbjct: 1 LQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALYHRFPRVDE 57 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G++S +LV T +++ARE +L +R+ K SI AD VE+LI ++L Sbjct: 58 GDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFL 117 Query: 129 DGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D I+ + + G ++D KT LQE+ + P Y V G HD Sbjct: 118 DSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHD 177 Query: 187 PRFTVVVEISGL-APAQGMDCSKRA 210 FT+ ++SGL P G S+R Sbjct: 178 QEFTIHCQVSGLSEPVVGTGSSRRK 202 >gi|307610570|emb|CBX00158.1| hypothetical protein LPW_19031 [Legionella pneumophila 130b] Length = 206 Score = 118 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 111/206 (53%), Gaps = 6/206 (2%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 + L++ALTH S ++YER EFLGD IL +I+ LFN F EG+LS + LV Sbjct: 2 AYLKQALTHCSAGS---DNYERFEFLGDSILSFVIANELFNRFPLHSEGQLSRLRSFLVK 58 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 E +++ARE+ L ++ + + TSI AD +E+++AA+YLDGG+ A + Sbjct: 59 GEMLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEAILAAIYLDGGMTAAKQIIL 118 Query: 141 KYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + R +DAKT+LQE+ A PEY +T G +H F V I G+ Sbjct: 119 MLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKVEGDEHAQIFHVTCTIEGV 178 Query: 199 -APAQGMDCSKRAAEQVAAAEVLKRE 223 A G ++R AEQ+AA +L++ Sbjct: 179 SQVAYGTGPNRRKAEQLAAKAMLEQL 204 >gi|194676595|ref|XP_591998.4| PREDICTED: ribonuclease III, nuclear isoform 2 [Bos taurus] gi|297487776|ref|XP_002696436.1| PREDICTED: ribonuclease III, nuclear-like isoform 2 [Bos taurus] gi|296475748|gb|DAA17863.1| ribonuclease III, nuclear-like isoform 2 [Bos taurus] Length = 1330 Score = 118 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1062 KLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1121 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 1122 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1180 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1181 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1240 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1241 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1289 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 919 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 978 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 979 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1038 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1039 LHPLQLQEPNTDRQLIETSPV 1059 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 835 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 865 >gi|50365047|ref|YP_053472.1| ribonuclease III, dsRNA-specific ribonuclease [Mesoplasma florum L1] gi|81391925|sp|Q6F1N5|RNC_MESFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|50363603|gb|AAT75588.1| ribonuclease III, dsRNA-specific ribonuclease [Mesoplasma florum L1] Length = 231 Score = 118 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 106/227 (46%), Gaps = 6/227 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + + G + + ALTH+S ++ + E+Y+RLEFLGD +L + +S L+ Sbjct: 1 MTMHEFFENFGIKINDSKIFSTALTHNSYANETKTKETYQRLEFLGDAVLQMYVSKFLYL 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +F +A EG+L+ + +V ET S++A+ +DL IR+ K SI +DV E+ Sbjct: 61 NFTNAPEGKLTKTRSDIVRQETLSEIAKMIDLGKIIRLGQGEIKSKGYEKPSILSDVYEA 120 Query: 122 LIAALYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 + AA+YLD E + + KY ++ K ++ + A + + + Sbjct: 121 VTAAIYLDQTEEVLISWIKSTIFKYIEKNDYKELNHDYKSELQEIIQAEIRSDLEYRVES 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 D+ +TV V + G G SK+ A Q AA + L + Sbjct: 181 QKHIEKDNKIEYTVSVNLDGKKYGIGTGFSKQEASQNAAKDCLNKLK 227 >gi|54026155|ref|YP_120397.1| ribonuclease III [Nocardia farcinica IFM 10152] gi|81373706|sp|Q5YS08|RNC_NOCFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54017663|dbj|BAD59033.1| putative RNase III [Nocardia farcinica IFM 10152] Length = 240 Score = 118 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 101/227 (44%), Gaps = 7/227 (3%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 + +++L + +G LL ALTH S ++ + ERLEFLGD +LGL I+ L+ Sbjct: 11 SDDHASLLEALGVDVR-PDLLRLALTHRSYAYENGGLPTNERLEFLGDSVLGLSITERLY 69 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---RKDVCSFMTSIQAD 117 + EGEL+ S+V+ ++VAR L SI AD Sbjct: 70 HEHPDKSEGELAKLRASVVNMHALAEVARGLGEGGLGAHLLLGKGEELTGGRDKPSILAD 129 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYK 176 +ESL+ A++L GI+VA V + + + + + A+ G+ Sbjct: 130 GMESLLGAVHLQHGIDVARGVVLRLFADLLERGPRMGAGLDWKTSLQELTAERGLGVPSY 189 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GPDHD FT I G A QG+ SK+ AEQ AA + Sbjct: 190 EISSTGPDHDKEFTATTVIGGRAYGQGVGRSKKEAEQKAAGAAYQAL 236 >gi|332299505|ref|YP_004441426.1| Ribonuclease 3 [Porphyromonas asaccharolytica DSM 20707] gi|332176568|gb|AEE12258.1| Ribonuclease 3 [Porphyromonas asaccharolytica DSM 20707] Length = 259 Score = 118 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 92/223 (41%), Gaps = 6/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLF 60 +TL RIG L A+ H S S + + ERLEFLGD +L I T L+ Sbjct: 27 NLTTLFDRIGIVPVRTDLYLLAMRHRSCSIVGEEGEKLNNERLEFLGDAVLEASICTYLY 86 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGELS +SLVS ++V R L L +I + + + ++ Sbjct: 87 QLHPTWDEGELSKCKSSLVSRPVNNEVGRRLHLERYIIMVPSALDNSVDIYGNTVEALIG 146 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++ E F+ ++ + ++ K+EL EW + E+++ Sbjct: 147 AIYLDQGYARTQEFVRDFILPTYRDMQAHTVASIQNYKSELIEWVQKHHL-SHEFRLEEH 205 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 HD F V I G +G SK+ A+Q AA + LK Sbjct: 206 EMAPHD-HFIYSVWIDGKPVGRGAGSSKKRAQQEAARDTLKLL 247 >gi|308177247|ref|YP_003916653.1| ribonuclease III [Arthrobacter arilaitensis Re117] gi|307744710|emb|CBT75682.1| ribonuclease III [Arthrobacter arilaitensis Re117] Length = 225 Score = 118 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 56/212 (26%), Positives = 92/212 (43%), Gaps = 4/212 (1%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 KR+G + A TH S S+ + + ERLEFLGD ILG ++ L+ F Sbjct: 1 MKRLGINI-DSETFRLAFTHRSYSYEHGGIPTNERLEFLGDSILGFCVAEYLYASFPDLP 59 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+L+ R ++VS + +AR+L++ + + + + +SI AD +E+++ A Y Sbjct: 60 EGDLAKRRAAIVSTRALAMIARDLEVGEHLFLGRGESQSNGANKSSILADTMEAILGATY 119 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV-TFRSGPDHD 186 L G++ A V ++ + E SGPDH Sbjct: 120 LVQGMDEARALVLRFVTPLLEDPRLLGATTDWKTVIQEEVASQKLGEMCYEVTGSGPDHA 179 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + + I + +G SK+ AEQ AA Sbjct: 180 RTYVAKLCIGAKSYGEGHGPSKKEAEQEAAHN 211 >gi|332284936|ref|YP_004416847.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7] gi|330428889|gb|AEC20223.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7] Length = 252 Score = 118 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 113/228 (49%), Gaps = 10/228 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ TL+ + Y F + SLLE+ALTH S S ERLEFLGD +L ++++LLF Sbjct: 1 MASQN--TLQAALDYQFGDASLLEQALTHRSHS---GPHNERLEFLGDSVLNFVVASLLF 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+LS +LV + +A L+L+ ++R+ K SI AD +E Sbjct: 56 VRFPKIDEGDLSRLRANLVKQAALADIAGRLNLSQYLRLGEGELKSGGFRRPSILADALE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178 +L AA+YLDGG + A + + ++ +D KT LQE A+ P Y V Sbjct: 116 ALFAAVYLDGGFDAAQQVIQRQYETILDNVDAKTLGKDPKTLLQELLQARKLDLPAYTVV 175 Query: 179 FRSGPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G H+ F V +I + + G S+RAAEQ AA + Sbjct: 176 ATHGAAHNQLFEVECQIPVLDIKVSAG-GASRRAAEQSAAELAIAAIN 222 >gi|313901966|ref|ZP_07835382.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965] gi|313467755|gb|EFR63253.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965] Length = 284 Score = 118 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 107/222 (48%), Gaps = 7/222 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + G A A +ALTH+S + + ERLEFLGD +L L ++ +F Sbjct: 43 VEAVAALTGVAPARPEPFLEALTHASYRSEHPDTAGPDNERLEFLGDAVLNLCVTDYIFR 102 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGELS ++V AET + A+ L L +R+ S+ AD E+ Sbjct: 103 TYPQRPEGELSKLRAAVVRAETLAATAQRLGLGELLRLGRGEEATGGRQRPSVLADAYEA 162 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178 ++AA+YL G+E A F+ + + + D KT LQE + P Y+V Sbjct: 163 MVAAVYLQEGLEGARAFILRTLGDDIRRLAESSGACDDPKTALQELSRRLGLGEPTYRVV 222 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +GP+HDPR+TV V + G AQ + SK+ AE+ AA L Sbjct: 223 GAAGPEHDPRYTVEVRVGGRPLAQAVGRSKKVAEREAARMAL 264 >gi|93005197|ref|YP_579634.1| ribonuclease III [Psychrobacter cryohalolentis K5] gi|92392875|gb|ABE74150.1| RNAse III [Psychrobacter cryohalolentis K5] Length = 265 Score = 118 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 110/224 (49%), Gaps = 7/224 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 R + L +++GY F + SL + ALTH S +++YERLEFLGD +LG+++ L++ + Sbjct: 33 RLAVLTRKLGYVFNDLSLPKLALTHRSFDS--KKNYERLEFLGDALLGMIVGEALYHRYP 90 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG L+ +LV E+ +A+ L+L++ + + RK SI AD VESLI Sbjct: 91 TQNEGRLTRMRATLVRQESLVIIAQNLELSNQLILGVGERKGGGRNRASILADAVESLIG 150 Query: 125 ALYLDGGIEVAGTFV---DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD + K +DAK+ LQEW +K P Y++ Sbjct: 151 AIYLDSQDMNITRECVLSWYGDLIDNVNDQKALKDAKSRLQEWLQSKQFDLPHYELMETR 210 Query: 182 GPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G F V +++ S+R AEQ AA ++ + Sbjct: 211 GNAPHQIFVVRCQVNILNCPDITESGESRRIAEQKAAELMINQL 254 >gi|114327656|ref|YP_744813.1| ribonuclease III [Granulibacter bethesdensis CGDNIH1] gi|114315830|gb|ABI61890.1| ribonuclease III [Granulibacter bethesdensis CGDNIH1] Length = 258 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 117/229 (51%), Gaps = 12/229 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-----------SYQESYERLEFLGDRILGLL 54 E + + FA R LL +ALTH S S ERLEF+GDR+LGL+ Sbjct: 19 LEAAEALLSHRFARRDLLAEALTHRSAVKIMHGQTGQSLPRGAGSNERLEFVGDRVLGLV 78 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ++ L F +EGEL R LVS + +A + L + V+ K + ++ Sbjct: 79 VAEWLVERFPLEQEGELGRRLAHLVSQPVLAGIAEQSGLPQILSVAPGEAKAGVRKLATV 138 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 +D +E+LI ALYLD G++ F+ ++W+ + + +DAKT LQEWA P Sbjct: 139 LSDAMEALIGALYLDAGLDPVRQFIRRHWEPVMQRQTEPPKDAKTALQEWAQGLGLHLPT 198 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y++ R GP H+P F V V + QG SKRAAEQ+AA ++L R Sbjct: 199 YRLARREGPPHNPVFWVEVLVGDHV-GQGQAGSKRAAEQLAAQDLLGRI 246 >gi|224045068|ref|XP_002199233.1| PREDICTED: ribonuclease III, nuclear [Taeniopygia guttata] Length = 1338 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1070 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1129 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F + ++ V AD++ES Sbjct: 1130 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAITNDKTKRPVTLRT-KTLADLLESF 1188 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1189 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1248 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1249 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1297 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F + +EG L+ ++V + + +A++L+L F+ Sbjct: 927 NHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELERFM 986 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 987 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNEKDLRDVWLNYP 1046 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1047 LHPLQLQESNTDRQLIETSPV 1067 Score = 43.4 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 843 LDKLIGYTFRDRCLLQLAMTHPSHHLNFGMN 873 >gi|115314441|ref|YP_763164.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18] gi|122325533|sp|Q0BN07|RNC_FRATO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|115129340|gb|ABI82527.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18] Length = 230 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 9/222 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS +GY F + +LL +ALTH S +++YERLEFLGD +L +I+ +L+ F Sbjct: 5 YSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFTD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T +Q+A L + +I + I DV E++I A Sbjct: 62 LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYII--LGASEQGGHKREKILEDVFEAVIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD + K+++ +D+K++LQE PEY + G Sbjct: 120 IYLDSDFATVKKVILKWYQPIISSINLDTIKFKDSKSKLQEILLQNALSLPEYSIETIDG 179 Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 DH+ +FTVV L + S++ AEQ A ++++ Sbjct: 180 KDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIEML 221 >gi|312069951|ref|XP_003137921.1| RNase3 domain-containing protein [Loa loa] gi|307766916|gb|EFO26150.1| RNase3 domain-containing protein [Loa loa] Length = 1297 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 11/228 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + LEK IG F + +L KA T + ++ +RLEFLGD +L L+ + L+ HF Sbjct: 987 LTELEKSIGVTFKHIRVLAKAFTRRNIGFNNLTLGHNQRLEFLGDTVLQLITTDYLYKHF 1046 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-MTSIQADVVESL 122 EG LS+ LVS T S + ++ + ++ ++K +AD+VE+ Sbjct: 1047 PYHHEGHLSILRTCLVSNRTQSVICDDIGMTKYLVTPKVMQKSGLPILRVKDKADLVEAF 1106 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV------TPE 174 + ALY+D G + F + R + D K++LQ+ + PE Sbjct: 1107 LGALYVDRGFDYCKVFCRICFFPRLKFFIIAQHWNDPKSQLQQCCLTLRQMDGGEPDIPE 1166 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+ GP + + V V A G + + A+ AA L + Sbjct: 1167 YRTIAVEGPTNTRIYKVAVYFRKKRLAVGCGHTMQLAQMRAAENALIK 1214 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 52/115 (45%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 S ERLEFLGD ++ + + LF F EG L+ +++V + + +A+ Sbjct: 834 KKAEQSPLNHNERLEFLGDAVIEFITTIHLFYMFSELDEGGLATYRSTMVQNKNLAVLAK 893 Query: 90 ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 ++ L F+ + S + A+ E+++AA+YLD GI+ Sbjct: 894 KIGLDEFMLYAHGPDLCHESDLRHAMANAFEAMMAAIYLDAGIDECDRIFGHAMF 948 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 16/30 (53%), Positives = 20/30 (66%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQES 39 ++RI Y F NRSLLE ALTH S +Y + Sbjct: 756 QERIHYVFKNRSLLELALTHPSYRTNYGTN 785 >gi|87118656|ref|ZP_01074555.1| ribonuclease III [Marinomonas sp. MED121] gi|86166290|gb|EAQ67556.1| ribonuclease III [Marinomonas sp. MED121] Length = 217 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 83/213 (38%), Positives = 115/213 (53%), Gaps = 6/213 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 GY FA+ LLE ALTH S ++ ERLEFLGD IL +I+ LF+ F AKEGELS Sbjct: 2 GYFFADLGLLELALTHRSFG---GKNNERLEFLGDSILNYVIAEDLFHRFPKAKEGELSR 58 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 SLV ET +++ARE L ++++ + K SI D VE +I A++LD G++ Sbjct: 59 LRASLVKGETLAEIAREFKLGDYLKLGAGELKSGGFRRDSILEDAVEGIIGAIFLDAGMD 118 Query: 134 VAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 + +++ R + +DAKT LQE+ A+ P+Y+VT G HD F V Sbjct: 119 TCSERILSWYESRLNATSLKIVTKDAKTRLQEFLQARKHALPQYEVTEVLGEPHDQTFYV 178 Query: 192 VVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223 I A P +G S+R AEQ AA + L Sbjct: 179 HCVIELFADPIEGKGNSRRIAEQKAATQALAML 211 >gi|269794452|ref|YP_003313907.1| RNAse III [Sanguibacter keddieii DSM 10542] gi|269096637|gb|ACZ21073.1| RNAse III [Sanguibacter keddieii DSM 10542] Length = 234 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 68/218 (31%), Positives = 97/218 (44%), Gaps = 4/218 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L + +G + LL +LTH S +H + ERLEFLGD +LGL+ + LF Sbjct: 15 LLEELGVHL-DPELLVLSLTHRSFAHEAGGIPTNERLEFLGDAVLGLVAAEALFRRHPDR 73 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ + VS + VAR L L +I + + SI +D VESLI A+ Sbjct: 74 PEGDLAKMRAASVSQRALAAVARRLSLGDYILLGKGESQTRGFDKDSILSDTVESLIGAV 133 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YL G+E A +FV + + + A A+ V + GPDH Sbjct: 134 YLSHGLEEARSFVHRLLDSTLDAAADLGAGLDWKTSLQEAAAERNVGAPEYTSEGEGPDH 193 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 FT V I G G +K+ AEQ+AA + Sbjct: 194 ARIFTAHVIIDGEILGTGQGTAKKHAEQIAAEQAYVAL 231 >gi|78356751|ref|YP_388200.1| ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|90101625|sp|Q310Z1|RNC_DESDG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|78219156|gb|ABB38505.1| RNAse III [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 229 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 114/223 (51%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62 + L+ + Y FA+ LLE ALTHSS ++ E ERLE+LGD +L L +S LF Sbjct: 2 FEKLQDVLCYRFADVRLLETALTHSSYANERGTEIEHNERLEYLGDAVLELTVSEQLFTR 61 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+L+ LVS + +++AREL L +++ + +S+ +D E++ Sbjct: 62 FPEAREGQLTRMRARLVSKPSLAELARELKLDTYLLLGKGEESQGGRTRSSVLSDAFEAI 121 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A++LDGG AG V + R + + +DAK+ LQE F P Y + Sbjct: 122 LGAIFLDGGYAAAGKTVLHVFSSRWPQGAEAARTKDAKSTLQELTQRLFKERPVYTLLGS 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP+H+ F V + + + S + AEQ AA L+ Sbjct: 182 SGPEHEKIFKVRLLLPDGRALETEGQSVKRAEQKAAGLALELL 224 >gi|189345713|ref|YP_001942242.1| Ribonuclease III [Chlorobium limicola DSM 245] gi|189339860|gb|ACD89263.1| Ribonuclease III [Chlorobium limicola DSM 245] Length = 273 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 104/212 (49%), Gaps = 6/212 (2%) Query: 18 ANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 +L ALTH S++H ES +RLEFLGD +L ++IS L+ F ++ EG+LS Sbjct: 51 NEPALYLTALTHRSVTHDASVPGTESNQRLEFLGDAVLDMVISEYLYRSFPNSAEGDLSS 110 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 +V+ ++ + A+ + L +++ + + S AD ESL A+YLD G++ Sbjct: 111 NRAKIVNRKSLAGFAQTMGLGNYLIIGESADCNKIRTSESALADAFESLTGAIYLDKGLD 170 Query: 134 VAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 FV K + + K+ L E+ + P Y V + G +H+ FT+ Sbjct: 171 AVRAFVMKQVIEHVDFKTIVASEHNYKSRLIEYTQSHHIPPPVYTVIAQDGAEHEKVFTI 230 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V +G + +G K+ AEQ+AA E ++ Sbjct: 231 EVSCAGCSCGRGSAPRKKDAEQLAAKEAVEML 262 >gi|21674928|ref|NP_662993.1| ribonuclease III [Chlorobium tepidum TLS] gi|28201878|sp|Q8KAN7|RNC_CHLTE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|21648156|gb|AAM73335.1| ribonuclease III [Chlorobium tepidum TLS] Length = 272 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 69/213 (32%), Positives = 103/213 (48%), Gaps = 8/213 (3%) Query: 19 NRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 NR + ALTH S+ H + ES +RLEFLGD +L LLIS LF F + EG LS Sbjct: 44 NRLIYRTALTHRSVLHDHHSEEHKPESNQRLEFLGDAVLDLLISEHLFKQFPGSDEGHLS 103 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +V+ ++ + A EL L + + K S AD +E+L+ A+YLD G+ Sbjct: 104 SNRAKIVNRKSLAAFALELQLGEHLIIGESADKQKIRTSESALADALEALVGAIYLDQGL 163 Query: 133 EVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 A F+ + + + + K+ L E+ ++ P Y V G +H+ F Sbjct: 164 AGAERFITNHVIAKVDLHKLVEAEYNYKSRLIEYTQSRQLPPPLYTVITEEGAEHEKTFV 223 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V V +G +G K+ AEQ+AA E +KR Sbjct: 224 VEVSCNGQPLGRGTAPRKKDAEQLAAKEAMKRL 256 >gi|327284145|ref|XP_003226799.1| PREDICTED: ribonuclease 3-like [Anolis carolinensis] Length = 1323 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1055 KLTMFEDAIGVTFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1114 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F + ++ V AD++ES Sbjct: 1115 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAITNDKTKRPVALRT-KTLADLLESF 1173 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1174 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1233 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1234 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMCAAMDALEKYN 1282 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 52/96 (54%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 927 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 986 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + S + A+ E+LI A+YL+G +E Sbjct: 987 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLE 1022 Score = 43.0 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 843 LDKLIGYIFKDRCLLQLAMTHPSHHLNFGMN 873 >gi|94263438|ref|ZP_01287251.1| Ribonuclease III [delta proteobacterium MLMS-1] gi|93456168|gb|EAT06307.1| Ribonuclease III [delta proteobacterium MLMS-1] Length = 233 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 70/215 (32%), Positives = 96/215 (44%), Gaps = 7/215 (3%) Query: 2 SALRYSTLEKRI---GYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLI 55 + L R+ GY F SLLE AL HSS + + S ERLEFLGD +LGL + Sbjct: 1 MSKNSDPLAARLAAMGYRFKRTSLLELALVHSSRAAEAGKGVSSNERLEFLGDAVLGLAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + LL+ + EG+LS +LV+ E + +AR+L L FIR+ SI Sbjct: 61 AALLYEAHPTMPEGDLSRHRAALVNEEHLAGMARQLALGEFIRLGRGEEATGGRDKPSIL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 A E+L+ A+YLDGG E A + + R + + Sbjct: 121 AATFEALVGAVYLDGGYEPALALLRPLFAPWVANPPLPRISDSKSALQEVLQQRHGEGPV 180 Query: 176 KVTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDHD RFTV VE+ G +G K+ Sbjct: 181 YYLENEEGPDHDKRFTVRVELQGKVLGRGRGRGKK 215 >gi|119631174|gb|EAX10769.1| ribonuclease III, nuclear, isoform CRA_b [Homo sapiens] Length = 1120 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 852 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 911 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 912 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 970 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 971 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1030 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1031 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1079 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 709 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 768 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 769 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 828 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 829 LHPLQLQEPNTDRQLIETSPV 849 Score = 43.0 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 625 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 655 >gi|34784428|gb|AAH57687.1| Rnasen protein [Mus musculus] Length = 942 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 674 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 733 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 734 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 792 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 793 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 852 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 853 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 901 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 531 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 590 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 591 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 650 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 651 LHPLQLQEPNTDRQLIETSPV 671 Score = 43.0 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 447 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 477 >gi|29123082|gb|AAO65849.1| ribonuclease III [Mus musculus] Length = 1021 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 753 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 812 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 813 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAVTNDKTKRPVALRT-KTLADLLESF 871 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 872 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 931 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 932 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 980 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 610 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 669 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 670 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPGLREVWLNYP 729 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 730 LHPLQLQEPNTDRQLIETSPV 750 Score = 43.0 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 526 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 556 >gi|171780118|ref|ZP_02921022.1| hypothetical protein STRINF_01906 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281466|gb|EDT46901.1| hypothetical protein STRINF_01906 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 228 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 12/231 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M AL + L++ G AF +++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MQALD-TKLQRDFGIAFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSVRFNSL---VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 LF + E V E+ + +R FI++ + K + Sbjct: 60 QYLFKKYPKKPE---GDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDT 116 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVT 172 I D+ E+ + AL +D G+E F+++ + K + + +D KT LQE VT Sbjct: 117 ILGDLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELLQGHSDVT 176 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +Y+V+ SGP H F V V ++ A ++G+ SK+ AEQ AA L Sbjct: 177 IDYRVSSESGPAHAKVFEVTVYVNDEAKSKGIGKSKKLAEQDAAKNALATL 227 >gi|85716284|ref|ZP_01047258.1| ribonuclease III [Nitrobacter sp. Nb-311A] gi|85696956|gb|EAQ34840.1| ribonuclease III [Nitrobacter sp. Nb-311A] Length = 266 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 122/202 (60%), Gaps = 3/202 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +E+R+G+ FA+ SLL A TH S S +SY+RLEFLGD +LGL+IS +L+ F Sbjct: 44 AAIEQRLGHKFADISLLTTAFTHVSALKSSRGRSDSYQRLEFLGDHVLGLVISDMLYRAF 103 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS R LV ETC VAR LDL +++ + S+ D+ E++I Sbjct: 104 PQADEGELSKRLADLVRKETCIDVARSLDLQEGVKLGAVGAGAGARLRRSVLGDICEAVI 163 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG VA FV++ W +R K + RD KT LQEWA K TP Y+ R+GP Sbjct: 164 GAVYLDGGYAVAAAFVERNWLERMRKPVRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 223 Query: 184 DHDPRFTVVVEISGLAPAQGMD 205 HDPRF V VE+ GL ++G+ Sbjct: 224 HHDPRFRVAVELPGLEVSEGIG 245 >gi|325000484|ref|ZP_08121596.1| RNAse III [Pseudonocardia sp. P1] Length = 249 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 55/216 (25%), Positives = 87/216 (40%), Gaps = 11/216 (5%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL ALTH S ++ + + ERLEFLGD +L ++I+ L+ EG+L+ Sbjct: 25 DEELLTLALTHRSYAYEHGGLPTNERLEFLGDSVLSIVITERLYRDHPDLPEGQLAKLRA 84 Query: 77 SLVSAETCSQVAREL--------DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 S+V+ + VA L L +++ + SI AD E+L+ A+YL Sbjct: 85 SVVNMHALAGVAVALPTPGESSDGLGAYLYLGRGEELTGGRSKASILADATEALLGAVYL 144 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G+E + V + + + + A G GPDH Sbjct: 145 QHGLEPSRELVHRLFADLLHSAPLLGAGLDWKTSLQELTAAGGHGVPEYRIDEEGPDHLK 204 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 FT + G G +K+ AEQ AA + Sbjct: 205 VFTATAVVGGRDLGSGAGRTKKEAEQKAAELAWRTL 240 >gi|157326505|gb|ABV44384.1| ASL1/DROSHA fusion [Mus musculus] Length = 756 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 488 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 547 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 548 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 606 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 607 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 666 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 667 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 715 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 345 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 404 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 405 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 464 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 465 LHPLQLQEPNTDRQLIETSPV 485 Score = 43.0 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 261 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 291 >gi|73953916|ref|XP_868245.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 6 [Canis familiaris] Length = 635 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 367 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 426 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 427 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 485 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 486 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 545 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 546 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 594 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 224 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 283 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 284 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 343 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 344 LHPLQLQEPNTDRQLIETSPV 364 Score = 43.0 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 140 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 170 >gi|295086176|emb|CBK67699.1| RNAse III [Bacteroides xylanisolvens XB1A] Length = 355 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 5/225 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57 + Y + +G+ N L E+AL H S S + ERLEFLGD IL ++ Sbjct: 29 NRESYLCFYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGD 88 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +++ F+ +EG L+ + +V ET +++A E+ L I+ S+ + Sbjct: 89 IVYKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHNSYMYGNAFEA 148 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 + ++ + + + + S K K++L EW+ + Sbjct: 149 FIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNF-KSKLIEWSQKNKMEVSFELI 207 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 D +P F V I GL G SK+ ++Q AA +K+ Sbjct: 208 EQFLDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252 >gi|89255958|ref|YP_513320.1| ribonuclease III [Francisella tularensis subsp. holarctica LVS] gi|187931188|ref|YP_001891172.1| ribonuclease III [Francisella tularensis subsp. mediasiatica FSC147] gi|254367315|ref|ZP_04983341.1| ribonuclease III [Francisella tularensis subsp. holarctica 257] gi|254368791|ref|ZP_04984804.1| hypothetical protein FTAG_00596 [Francisella tularensis subsp. holarctica FSC022] gi|122501056|sp|Q2A4N2|RNC_FRATH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238691551|sp|B2SFY4|RNC_FRATM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|89143789|emb|CAJ78994.1| Ribonuclease III [Francisella tularensis subsp. holarctica LVS] gi|134253131|gb|EBA52225.1| ribonuclease III [Francisella tularensis subsp. holarctica 257] gi|157121712|gb|EDO65882.1| hypothetical protein FTAG_00596 [Francisella tularensis subsp. holarctica FSC022] gi|187712097|gb|ACD30394.1| ribonuclease III [Francisella tularensis subsp. mediasiatica FSC147] Length = 230 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 9/222 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS +GY F + +LL +ALTH S +++YERLEFLGD +L +I+ +L+ F Sbjct: 5 YSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFTD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T +Q+A L + +I + I DV E++I A Sbjct: 62 LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYII--LGASEQGGHKREKILEDVFEAVIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD + K+++ +D+K++LQE PEY + G Sbjct: 120 IYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETIDG 179 Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 DH+ +FTVV L + S++ AEQ A ++++ Sbjct: 180 KDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIEML 221 >gi|27552890|gb|AAH41162.1| RNASEN protein [Homo sapiens] Length = 722 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 454 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 513 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 514 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 572 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 573 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 632 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 633 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 681 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 311 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 370 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 371 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 430 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 431 LHPLQLQEPNTDRQLIETSPV 451 Score = 43.0 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 227 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 257 >gi|226940389|ref|YP_002795463.1| ribonuclease III [Laribacter hongkongensis HLHK9] gi|226715316|gb|ACO74454.1| Rnc [Laribacter hongkongensis HLHK9] Length = 238 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 6/221 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L + IG+ F + +LL++ALTH S + ER EF+GD IL I+ +LF+ F Sbjct: 7 IDRLMQHIGHLFTSPALLKEALTHRSYGQ---PNNERFEFVGDGILNYTIARMLFDAFPE 63 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS +LV+ T +++AREL L + + RK SI AD +E++ AA Sbjct: 64 LSEGQLSRLRANLVNQATLAEIARELTLGDCLFLGDGERKSGGHDRPSILADAMEAIFAA 123 Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + LD VA V + + R + + +DAKT LQE A+ P Y++ +SG Sbjct: 124 VCLDADFAVAENVVRRLYAARVAGIDLNRQAKDAKTRLQEMLQARRLPLPAYRILNQSGD 183 Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 H +F V +I L A G S+RAAEQ+AA ++ Sbjct: 184 AHLSQFEVACDIPQLGLATCGEGSSRRAAEQLAAERAIEAI 224 >gi|220934266|ref|YP_002513165.1| Ribonuclease III [Thioalkalivibrio sp. HL-EbGR7] gi|219995576|gb|ACL72178.1| Ribonuclease III [Thioalkalivibrio sp. HL-EbGR7] Length = 228 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 106/227 (46%), Gaps = 13/227 (5%) Query: 1 MSALRYSTL--EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 MS + L E + LL +ALTH S + ERLE+LGD +LG++++ Sbjct: 1 MSRIPLHDLLPEGL-----HDSELLTEALTHRSAGS---PNNERLEYLGDAVLGMVMAEH 52 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF A EG+LS +LV+ ++ + + + L I + K + SI AD Sbjct: 53 LFKAHPEASEGDLSRLRATLVNKDSLAVIGKAQGLGGHINLGQGELKSGGARRNSILADA 112 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYK 176 VE++I A+YLD G + A FV + R +D KT LQEW + P Y+ Sbjct: 113 VEAVIGAVYLDSGFDAARRFVLALYADRLESLPALDALKDPKTRLQEWLQGRSRELPVYE 172 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 VT +G H+ RF + + G S+R AEQ AA LK Sbjct: 173 VTSVTGKAHEQRFRALCRVGDQEYP-GEGTSRRRAEQAAAECALKAL 218 >gi|309789990|ref|ZP_07684566.1| ribonuclease III [Oscillochloris trichoides DG6] gi|308228010|gb|EFO81662.1| ribonuclease III [Oscillochloris trichoides DG6] Length = 235 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 113/233 (48%), Gaps = 24/233 (10%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY------QESYERLEFLGDRILGLLISTLLF 60 L++++G F + L +A H S H + +ES ERLEFLGD +L L + L+ Sbjct: 2 DELQRQLGIRFNDEELFTRAFVHRSFIHEHPERNRPRESNERLEFLGDAVLNFLSAAWLY 61 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +F EGEL+ +LV T + AR LDL I++S + ++ ADV E Sbjct: 62 ANFPDRTEGELTHLRAALVKTNTLAGFARSLDLGRHIKISRGEDTPIARNRPALLADVFE 121 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +L+ A+YLD G++ TF+ +++ + + G D +T LQE A ++F TP Y++ Sbjct: 122 ALLGAIYLDQGLDAVRTFITPFFEHQIVVVLSGSDEVDYRTRLQEQAQSRFNRTPTYRMV 181 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSK--------RAAEQVAAAEVLKRE 223 SGPDH FT+ V I + G+ SK R L R Sbjct: 182 DVSGPDHQREFTMEVVIDEVRYGVGVGTSKQAAAQAAARE--------ALNRL 226 >gi|29748104|gb|AAH50057.1| Rnasen protein [Mus musculus] Length = 705 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 437 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 496 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F E L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 497 FPDHHERHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 555 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 556 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 615 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 616 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 664 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 294 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 353 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 354 LYAHGPDLCSESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 413 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 414 LHPLQLQEPNTDRQLIETSPV 434 Score = 42.6 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 210 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 240 >gi|239906016|ref|YP_002952755.1| ribonuclease III [Desulfovibrio magneticus RS-1] gi|239795880|dbj|BAH74869.1| ribonuclease III [Desulfovibrio magneticus RS-1] Length = 243 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 72/217 (33%), Positives = 111/217 (51%), Gaps = 5/217 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 +G+ FA +LL ALTHSS ++ E ERLEFLGD +L L +S LF+ F A EG Sbjct: 22 LGHEFATPALLATALTHSSCANERGEGTRHNERLEFLGDAVLELCVSEELFSLFPEAPEG 81 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 EL++ + LV+ + + +A L LA +R+ S+ +DV E+++ A++LD Sbjct: 82 ELTLLRSQLVNEASLAAMALRLGLAGHVRLGRGEENQGGRSRPSLLSDVFEAVVGAIFLD 141 Query: 130 GGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG A FV + + + + +D K+ LQE+ P Y + +GP+HD Sbjct: 142 GGYTAARAFVSRTFDGQWPERPAAPKIKDFKSRLQEFTQRTHKARPVYALLGSAGPEHDK 201 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 RF V + + ++ S + AEQ AA L G Sbjct: 202 RFEVRLTLPCGREILAVEKSVKKAEQQAARLALTVLG 238 >gi|156501954|ref|YP_001428019.1| ribonuclease III [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954597|ref|ZP_06559218.1| ribonuclease III [Francisella tularensis subsp. holarctica URFT1] gi|295311940|ref|ZP_06802764.1| ribonuclease III [Francisella tularensis subsp. holarctica URFT1] gi|189043315|sp|A7NAR0|RNC_FRATF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|156252557|gb|ABU61063.1| ribonuclease III [Francisella tularensis subsp. holarctica FTNF002-00] Length = 230 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 9/222 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS +GY F + +LL +ALTH S +++YERLEFLGD +L +I+ +L+ F Sbjct: 5 YSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFTD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T +Q+A L + +I + + I DV E++I A Sbjct: 62 LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYII--LGASEQGGNKREKILEDVFEAVIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD + K+++ +D+K++LQE PEY + G Sbjct: 120 IYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETIDG 179 Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 DH+ +FTVV L + S++ AEQ A ++++ Sbjct: 180 KDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIEML 221 >gi|110678686|ref|YP_681693.1| ribonuclease III [Roseobacter denitrificans OCh 114] gi|123362135|sp|Q16AI6|RNC_ROSDO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|109454802|gb|ABG31007.1| ribonuclease III [Roseobacter denitrificans OCh 114] Length = 228 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 80/210 (38%), Positives = 122/210 (58%), Gaps = 1/210 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + + +KR+G+ F +LL +A+TH+S+S + + +R+EFLGDR+LGL+++ L Sbjct: 1 MKLSAELKSFQKRLGHQFNQPALLAQAVTHASMSTANRGDNQRMEFLGDRVLGLVMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++A EG+L+ RFN+LV ETC+ VARE+DL + +R+ ++ D + Sbjct: 61 LRLDNNATEGQLAPRFNALVRKETCADVAREIDLGAVLRLGRSEMLSGGRRKQALLGDAI 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+Y D G + A + + W R + + RD KT LQEWA A+ P Y+ Sbjct: 121 EAVIAAVYQDAGFDAARALILRLWGDRVHEVEEDARDPKTALQEWAQARGLQPPRYEEVS 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 R GPDH P FT+ V IS Q SKR Sbjct: 181 RKGPDHAPIFTISVRISTGETDQATAGSKR 210 >gi|134301463|ref|YP_001121431.1| ribonuclease III [Francisella tularensis subsp. tularensis WY96-3418] gi|189043317|sp|A4IWK9|RNC_FRATW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|134049240|gb|ABO46311.1| ribonuclease III [Francisella tularensis subsp. tularensis WY96-3418] Length = 230 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 9/222 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS +GY F + +LL +ALTH S +++YERLEFLGD +L +I+ +L+ F Sbjct: 5 YSRFYNILGYNFKDCTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFTD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T +Q+A L + +I + I DV E++I A Sbjct: 62 LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYII--LGASEQGGHKREKILEDVFEAVIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD + K+++ +D+K++LQE PEY + G Sbjct: 120 IYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETIDG 179 Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 DH+ +FTVV L + S++ AEQ A ++++ Sbjct: 180 KDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIEML 221 >gi|325265700|ref|ZP_08132389.1| ribonuclease III [Kingella denitrificans ATCC 33394] gi|324982831|gb|EGC18454.1| ribonuclease III [Kingella denitrificans ATCC 33394] Length = 242 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 10/227 (4%) Query: 1 MSALR----YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56 M+ + L++R+GY F LL++ALTH S + ERLEF+GD I+ +++ Sbjct: 1 MNKSQKHTARQQLQQRLGYTFRQPELLQQALTHRSAGK---NNNERLEFVGDGIVNFVVA 57 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +L++ F EG LSV LV +++AREL + + + + K SI A Sbjct: 58 QMLYHAFPDLPEGRLSVLRTHLVKEAALAEMARELGVGAALTLGVGELKSGGHDRPSILA 117 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D +E+L AA+ LD + + + + QR + + D KT LQE A P+ Sbjct: 118 DALEALFAAIRLDADLPTVERIIQQLFSQRIAHIDQHQPAKDNKTRLQEALQACRLPLPK 177 Query: 175 YKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220 Y++ ++G +F V ++ L S+R AEQ A + L Sbjct: 178 YRIEKQTGEGEHAQFDVSCDLGELGKITYAHAHSRREAEQECARQAL 224 >gi|189241708|ref|XP_967454.2| PREDICTED: similar to ribonuclease iii [Tribolium castaneum] Length = 1180 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 100/229 (43%), Gaps = 16/229 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E+ +G F + LL +A T S ++ S +RLEFLGD +L L+ S L+ + Sbjct: 867 NLTKFEESVGLQFNHIRLLARAFTDRSVGYTNLTLGSNQRLEFLGDTVLQLIASEYLYKY 926 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L ++++ T +AD++E+ Sbjct: 927 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMSNYAVY----NNPKAELKTKDRADLLEAF 982 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA--------HAKFGVT 172 I ALY+D G+E F + + D K++LQ+ Sbjct: 983 IGALYVDQGLEFCEVFCQVTLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1042 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + V F + + +TV V G A M S + AE AA + L+ Sbjct: 1043 YKSVVCFTNSEVNTRVYTVAVYFRGRRLASAMGHSIQQAEMNAAKKALE 1091 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 21/34 (61%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 + LE+ + Y F NR+LL+ ALTH S ++ + Sbjct: 636 LNILEESVNYKFKNRALLQLALTHPSYRENFGTN 669 Score = 44.9 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 48/98 (48%) Query: 33 SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD 92 + S ERLEFLGD ++ L S LF F +EG L+ ++V + + +A+ L Sbjct: 718 TESNITHNERLEFLGDAVVEFLSSIHLFYTFPDLEEGGLATYRAAIVQNQHLAVLAKTLK 777 Query: 93 LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L F+ + + A+ E+L+ AL+LDG Sbjct: 778 LDQFMLYAHGSDLCHDLELRHAMANCFEALMGALFLDG 815 >gi|302525051|ref|ZP_07277393.1| ribonuclease III [Streptomyces sp. AA4] gi|302433946|gb|EFL05762.1| ribonuclease III [Streptomyces sp. AA4] Length = 246 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 98/223 (43%), Gaps = 7/223 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 ++L + +G + LL +LTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 14 ASLLEALGVEL-DPELLRLSLTHRSYAYEHGGLPPNERLEFLGDAVLGLVVTDHLYTTHP 72 Query: 65 SAKEGELSVRFNSLVSAET---CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG+L+ S+V+ ++ E L + + + SI AD +E+ Sbjct: 73 DLPEGQLAKLRASVVNMHALAGVARGLGEGGLGAHLLLGKGEELTGGRDKASILADGLEA 132 Query: 122 LIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +I A YL GIEVA V + A + + A G+ Sbjct: 133 VIGATYLAHGIEVARKLVHHLFDGLLAEAPLRGAGLDWKTSLQELTASGGLGVPEYRVED 192 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH FT V ++G A +G +K+ AEQ AA + Sbjct: 193 SGPDHRKEFTATVLVAGRALGEGNGTTKKEAEQKAAETAWRAL 235 >gi|118580198|ref|YP_901448.1| ribonuclease III [Pelobacter propionicus DSM 2379] gi|118502908|gb|ABK99390.1| RNAse III [Pelobacter propionicus DSM 2379] Length = 234 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 4/213 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLL 59 A + LE+ I Y F +++ L +ALTH S H +Y+RLEFLGD +LG++++ +L Sbjct: 1 MASDLAELEREIAYRFIDQAPLLQALTHPSFEHEQAGGGNYQRLEFLGDAVLGMVLAEML 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F F + EG LS + + +T + +AR L F+R+ + SI ADV+ Sbjct: 61 FRRFPDSNEGVLSRLRSQIADQDTLAGIARSFGLGRFVRLGRGEEQGAGRNKDSILADVL 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+LIAA+YLDGG++ + + + + + + DAK+ELQE A+ +P Y++ Sbjct: 121 EALIAAVYLDGGLKESRRLIQRLFVAILESRGARLRFNDAKSELQELLSARRLPSPVYRL 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 T SGP HD F V + +G SK+ Sbjct: 181 TGESGPPHDRLFIFQVLVDDAVVGEGEGRSKKI 213 >gi|62258114|gb|AAX77768.1| unknown protein [synthetic construct] Length = 265 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 11/229 (4%) Query: 1 MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 M + YS +GY F + +LL +ALTH S +++YERLEFLGD +L +I+ + Sbjct: 24 MLEMVPEYSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEV 80 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ F EG+LS + LV T +Q+A L + +I + I DV Sbjct: 81 LYKQFIDLAEGKLSQLRSKLVKGATLAQLASSLKMDEYII--LGASEQGGHKREKILEDV 138 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEY 175 E++I A+YLD + K+++ +D+K++LQE PEY Sbjct: 139 FEAVIGAIYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEY 198 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 + G DH+ +FTVV L + S++ AEQ A ++++ Sbjct: 199 SIETIDGKDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIEML 247 >gi|7022183|dbj|BAA91511.1| unnamed protein product [Homo sapiens] Length = 769 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 501 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 560 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 561 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 619 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 620 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 679 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 680 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 728 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 358 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 417 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 418 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 477 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 478 LHPLQLQEPNTDRQLIETSPV 498 Score = 42.6 bits (98), Expect = 0.038, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 274 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 304 >gi|57530438|ref|NP_001006379.1| ribonuclease 3 [Gallus gallus] gi|53134951|emb|CAG32380.1| hypothetical protein RCJMB04_24a21 [Gallus gallus] Length = 1336 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1068 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1127 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F + ++ V AD++ES Sbjct: 1128 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAITNDKTKRPVALRT-KTLADLLESF 1186 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1187 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1246 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1247 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1295 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F + +EG L+ ++V + + +A++L+L F+ Sbjct: 925 NHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 984 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 985 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDKDLRDVWLNYP 1044 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1045 LHPLQLQESNTDRQLIETSPV 1065 Score = 43.0 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 841 LDKLIGYTFRDRCLLQLAMTHPSHHLNFGMN 871 >gi|114600835|ref|XP_001157306.1| PREDICTED: ribonuclease III, nuclear isoform 3 [Pan troglodytes] Length = 762 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 494 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 553 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 554 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 612 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 613 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 672 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 673 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 721 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 351 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 410 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 411 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 470 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 471 LHPLQLQEPNTDRQLIETSPV 491 Score = 42.6 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 267 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 297 >gi|257068990|ref|YP_003155245.1| RNAse III [Brachybacterium faecium DSM 4810] gi|256559808|gb|ACU85655.1| RNAse III [Brachybacterium faecium DSM 4810] Length = 250 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 90/204 (44%), Gaps = 2/204 (0%) Query: 18 ANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 + LLE +LTH S S+ ERLEFLGD +L L ++ L+ + EG+L+ R Sbjct: 31 QDSGLLELSLTHRSYSYENDGLPHNERLEFLGDAVLQLAVTEHLYAAHPTLPEGDLARRR 90 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 + VS + +A +LDL +++R+ SI AD E++I A++L G +V+ Sbjct: 91 AATVSTRALAVIASKLDLGAYVRLGRGEDLTGGRAKASILADTTEAVIGAVHLALGQDVS 150 Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 FV + + + A SG +H +T V + Sbjct: 151 RRFVLDLLRPLLDSDEFLEAGYDFKSRLQEIAAAEGENVTYALSESGLEHQKVYTATVTV 210 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEV 219 G+ A+G SK+ AE AA Sbjct: 211 PGIVTARGDGASKKDAELAAAQNA 234 >gi|198414531|ref|XP_002121902.1| PREDICTED: similar to ribonuclease III, nuclear, partial [Ciona intestinalis] Length = 1224 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 11/231 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 + + E IG F + LL KA T ++ + +RLEFLGD + L+ S LF Sbjct: 962 KLTKFEDSIGVKFNHIRLLAKAFTWRNVHENILTHGHNQRLEFLGDSVCNLVASAYLFKL 1021 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC--SFMTSIQADVVE 120 + + EG L++ ++V+ T S VA EL + ++ + D + AD++E Sbjct: 1022 YPTHHEGHLTLLRATVVNGRTQSLVATELGMPEYVICTLDNDSTERVPEWREKNLADLLE 1081 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGV-----TP 173 + +AAL++D G++ TF+ + R + + D K+ LQ+ P Sbjct: 1082 AFVAALFIDKGLKYVKTFMKICFFPRLKEFILTQEWNDPKSCLQQCCLTLRQEGKEPQLP 1141 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y+++ ++GP H ++ V V G +G S + AE+ AA L + Sbjct: 1142 TYEISHQTGPSHSRKYVVTVHFKGEEIGKGTGESIQRAERNAARTALNQYN 1192 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 59/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 E ERLEFLGD ++G S LF F EG L+ LV+ + + +A L L F+ Sbjct: 819 EHNERLEFLGDAVVGYFTSVHLFLLFPDLSEGALTTFRTVLVNNQHLALLAERLQLDEFM 878 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + + + A+ E+L+ A+Y++ G+E A ++ + +R Sbjct: 879 LYAHGPDLCRKADLRHAMANCFEALMGAIYMEAGLERAQRLFGEFLWETEALQRVWRSLP 938 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 +LQE + Sbjct: 939 LHQLQEEEPVSDRRCIKDVPI 959 Score = 41.5 bits (95), Expect = 0.093, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 TLEK+IGY F R L A+ H S ++ + Sbjct: 732 LRTLEKKIGYEFKERKWLSHAMNHPSCQMNFGLN 765 >gi|15827877|ref|NP_302140.1| ribonuclease III [Mycobacterium leprae TN] gi|221230354|ref|YP_002503770.1| ribonuclease III [Mycobacterium leprae Br4923] gi|7531192|sp|O69469|RNC_MYCLE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|3150224|emb|CAA19196.1| ribonuclease III [Mycobacterium leprae] gi|13093430|emb|CAC30612.1| RNAse III [Mycobacterium leprae] gi|219933461|emb|CAR71754.1| RNAse III [Mycobacterium leprae Br4923] Length = 238 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 103/213 (48%), Gaps = 8/213 (3%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL ALTH S ++ + + ERLEFLGD +L L I+ LF+ EG+L+ S+ Sbjct: 19 ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLSLTITDELFHRHPDRSEGDLAKLRASV 78 Query: 79 VSAETCSQVARELDLASFIRVSSDLR---KDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 V+ + + VAR L R + +SI AD +ESL+ A+YL GIEVA Sbjct: 79 VNTQALAYVARNLSDGGLGVYLLLGRGETNTGGADKSSILADGMESLLGAIYLHHGIEVA 138 Query: 136 GTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + + + + D KT LQE A+ P Y VT +GPDHD FT VV Sbjct: 139 RQVILRLFGTLLDAAPTLGAGLDWKTSLQELTAARGMGVPSYVVTS-TGPDHDKEFTAVV 197 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 + G+ SK+ AEQ AA+ K + Sbjct: 198 VVMDTEYGSGIGHSKKEAEQKAASAAWKALDVL 230 >gi|300858757|ref|YP_003783740.1| ribonuclease III [Corynebacterium pseudotuberculosis FRC41] gi|300686211|gb|ADK29133.1| ribonuclease III [Corynebacterium pseudotuberculosis FRC41] gi|302206463|gb|ADL10805.1| Ribonuclease III [Corynebacterium pseudotuberculosis C231] gi|302331018|gb|ADL21212.1| Ribonuclease III [Corynebacterium pseudotuberculosis 1002] gi|308276705|gb|ADO26604.1| Ribonuclease III [Corynebacterium pseudotuberculosis I19] Length = 249 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 4/221 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 + Y++L +G R LL ALTH S ++ + ERLEFLGD +LGL +++ L Sbjct: 19 DRINYASLIDSLGIDIP-RDLLMLALTHRSFANENGSLPNNERLEFLGDAVLGLSVASKL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S E ++S S+VS + +ARE+ L SFI + SI AD Sbjct: 78 YEQYPSRAESDISKMRASIVSRYGLADIAREIKLGSFILLGKGELMTNGRDKESILADTT 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT- 178 E+L+ A+YL G EVA V + ++++ + + A P T Sbjct: 138 EALLGAIYLAHGFEVARNTVLRLFQRKIDTASAVGMHQDWKTTLQERAAERKLPIPVYTA 197 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +GP+H FT VV + +G +K+ AEQ AA + Sbjct: 198 SSTGPEHSQIFTAVVTVGTTVLGEGTGPNKKLAEQAAAHKA 238 >gi|56708583|ref|YP_170479.1| ribonuclease III [Francisella tularensis subsp. tularensis SCHU S4] gi|110671054|ref|YP_667611.1| ribonuclease III [Francisella tularensis subsp. tularensis FSC198] gi|224457765|ref|ZP_03666238.1| ribonuclease III [Francisella tularensis subsp. tularensis MA00-2987] gi|254371212|ref|ZP_04987214.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875445|ref|ZP_05248155.1| ribonuclease III [Francisella tularensis subsp. tularensis MA00-2987] gi|81597132|sp|Q5NER3|RNC_FRATT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|123359364|sp|Q14G66|RNC_FRAT1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54112881|gb|AAV29074.1| NT02FT1862 [synthetic construct] gi|56605075|emb|CAG46188.1| Ribonuclease III [Francisella tularensis subsp. tularensis SCHU S4] gi|110321387|emb|CAL09571.1| Ribonuclease III [Francisella tularensis subsp. tularensis FSC198] gi|151569452|gb|EDN35106.1| hypothetical protein FTBG_00981 [Francisella tularensis subsp. tularensis FSC033] gi|254841444|gb|EET19880.1| ribonuclease III [Francisella tularensis subsp. tularensis MA00-2987] gi|282159811|gb|ADA79202.1| Ribonuclease III [Francisella tularensis subsp. tularensis NE061598] Length = 230 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 9/222 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 YS +GY F + +LL +ALTH S +++YERLEFLGD +L +I+ +L+ F Sbjct: 5 YSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFID 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS + LV T +Q+A L + +I + I DV E++I A Sbjct: 62 LAEGKLSQLRSKLVKGATLAQLASSLKMDEYII--LGASEQGGHKREKILEDVFEAVIGA 119 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 +YLD + K+++ +D+K++LQE PEY + G Sbjct: 120 IYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETIDG 179 Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 DH+ +FTVV L + S++ AEQ A ++++ Sbjct: 180 KDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIEML 221 >gi|33585614|gb|AAH55696.1| Rnasen protein [Mus musculus] Length = 780 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 512 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 571 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 572 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 630 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 631 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 690 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 691 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 739 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 369 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 428 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 429 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 488 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 489 LHPLQLQEPNTDRQLIETSPV 509 Score = 42.6 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 285 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 315 >gi|331698524|ref|YP_004334763.1| Ribonuclease 3 [Pseudonocardia dioxanivorans CB1190] gi|326953213|gb|AEA26910.1| Ribonuclease 3 [Pseudonocardia dioxanivorans CB1190] Length = 238 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 87/211 (41%), Gaps = 6/211 (2%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL ALTH S ++ + ERLEFLGD +L ++++ L+ EG+L+ Sbjct: 16 DPELLTLALTHRSYAYENGGLPTNERLEFLGDSVLSIVVTERLYLDHPDLPEGQLAKLRA 75 Query: 77 SLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S+V+ + VA EL L + + + SI AD E+LI A+YL G+E Sbjct: 76 SVVNMNALAGVAAELVPDGLGAHLFLGRGEELTGGRAKASILADATEALIGAVYLQHGLE 135 Query: 134 VAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 + + + + + + A + GPDH FT Sbjct: 136 TSRDVIHRLFADLLRNAPLLGAGLDWKTSLQELTAAAELGVPEYRITEDGPDHLKTFTAT 195 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + G G +K+ AEQ AAA + Sbjct: 196 AVVGGRELGSGDGRTKKEAEQKAAALAWRTL 226 >gi|315920801|ref|ZP_07917041.1| ribonuclease III [Bacteroides sp. D2] gi|313694676|gb|EFS31511.1| ribonuclease III [Bacteroides sp. D2] Length = 330 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 5/218 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +G+ N L E+AL H S S + ERLEFLGD IL ++ +++ F+ Sbjct: 12 FYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L I+ S+ + + ++ Sbjct: 72 GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHNSYMYGNAFEAFIGAIYL 131 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + + S K K++L EW+ + D Sbjct: 132 DQGYERCKQFMEQRIINRYIDLDKISRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDHD 190 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +P F V I GL G SK+ ++Q AA +K+ Sbjct: 191 SNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 228 >gi|313886831|ref|ZP_07820536.1| ribonuclease III [Porphyromonas asaccharolytica PR426713P-I] gi|312923721|gb|EFR34525.1| ribonuclease III [Porphyromonas asaccharolytica PR426713P-I] Length = 259 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 92/223 (41%), Gaps = 6/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLF 60 +TL RIG L A+ H S S + + ERLEFLGD +L I T L+ Sbjct: 27 NLTTLFDRIGILPVRTDLYLLAMRHRSCSIVGEGGEKLNNERLEFLGDAVLEASICTYLY 86 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGELS +SLVS ++V R L L +I + + + ++ Sbjct: 87 QLHPTWDEGELSKCKSSLVSRPVNNEVGRRLHLERYIIMVPSALDNSVDIYGNTVEALIG 146 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++ E F+ ++ + ++ K+EL EW + E+++ Sbjct: 147 AIYLDQGYARTQEFVRDFILPTYRDMQAHTVASIQNYKSELIEWVQKHHL-SHEFRLEEH 205 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 HD F V I G +G SK+ A+Q AA + LK Sbjct: 206 EMAPHD-HFIYSVWIDGKPVGRGAGSSKKRAQQEAARDTLKLL 247 >gi|299147039|ref|ZP_07040106.1| ribonuclease 3 [Bacteroides sp. 3_1_23] gi|298514924|gb|EFI38806.1| ribonuclease 3 [Bacteroides sp. 3_1_23] Length = 355 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 5/218 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +G+ N L E+AL H S S + ERLEFLGD IL ++ +++ F+ Sbjct: 36 FYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 95 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L I+ S+ + + ++ Sbjct: 96 GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHNSYMYGNAFEAFIGAIYL 155 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + + S K K++L EW+ + D Sbjct: 156 DQGYERCKQFMEQRIINRYIDLDKISRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDHD 214 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +P F V I GL G SK+ ++Q AA +K+ Sbjct: 215 SNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252 >gi|237716739|ref|ZP_04547220.1| ribonuclease III [Bacteroides sp. D1] gi|262405515|ref|ZP_06082065.1| ribonuclease III [Bacteroides sp. 2_1_22] gi|298480489|ref|ZP_06998686.1| ribonuclease 3 [Bacteroides sp. D22] gi|229442722|gb|EEO48513.1| ribonuclease III [Bacteroides sp. D1] gi|262356390|gb|EEZ05480.1| ribonuclease III [Bacteroides sp. 2_1_22] gi|298273310|gb|EFI14874.1| ribonuclease 3 [Bacteroides sp. D22] Length = 331 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 5/218 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +G+ N L E+AL H S S + ERLEFLGD IL ++ +++ F+ Sbjct: 12 FYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L I+ S+ + + ++ Sbjct: 72 GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHNSYMYGNAFEAFIGAIYL 131 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + + S K K++L EW+ + D Sbjct: 132 DQGYERCKQFMEQRIINRYIDLDKISRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDHD 190 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +P F V I GL G SK+ ++Q AA +K+ Sbjct: 191 SNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 228 >gi|261253900|ref|ZP_05946473.1| ribonuclease III [Vibrio orientalis CIP 102891] gi|260937291|gb|EEX93280.1| ribonuclease III [Vibrio orientalis CIP 102891] Length = 225 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 6/206 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LEK++GY F + L+ ALTH S + ERLEFLGD IL +I+ L++ F Sbjct: 7 KLEKKLGYQFNDAELISLALTHRSA---NGKHNERLEFLGDSILSFVIADDLYHRFPKVN 63 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG++S +LV T +++ RE +L +++ K SI AD VE++I A+Y Sbjct: 64 EGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVEAIIGAIY 123 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD IEV + ++K R ++D KT LQE+ + P Y VT G H Sbjct: 124 LDSDIEVVRGIILSWYKTRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVTNIKGEAH 183 Query: 186 DPRFTVVVEISGL-APAQGMDCSKRA 210 + FTV E++G+ P G S+R Sbjct: 184 NQEFTVSCEVAGIGQPVIGKGTSRRK 209 >gi|229491421|ref|ZP_04385245.1| ribonuclease III [Rhodococcus erythropolis SK121] gi|229321706|gb|EEN87503.1| ribonuclease III [Rhodococcus erythropolis SK121] Length = 257 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 94/225 (41%), Gaps = 7/225 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 + L +G LL ALTH S ++ + ERLEFLGD +LG+ ++ L+ Sbjct: 15 NHDKLLAAVGVDIE-PGLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTENLYLS 73 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---RKDVCSFMTSIQADVV 119 EG+L+ S+V+ ++VAR L SI AD + Sbjct: 74 HPDKSEGDLAKIRASVVNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADGM 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVT 178 ES++ A++L GIE A V + ++ + A+ G Sbjct: 134 ESILGAIHLQHGIETARRVVLDLFDDLLTRAPLLGAGLDWKTSLQELTAEHGAGVPVYEI 193 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GPDHD FT V ISG G+ SK+ AEQ AA+ K Sbjct: 194 TATGPDHDKEFTATVLISGKPLGVGVGRSKKEAEQKAASSAWKTM 238 >gi|315179118|gb|ADT86032.1| ribonuclease III [Vibrio furnissii NCTC 11218] Length = 202 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 73/201 (36%), Positives = 105/201 (52%), Gaps = 6/201 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 ALTH S + ERLEFLGD IL +I+ L++ F EG++S +LV T + Sbjct: 2 ALTHRSA---NGKHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGNTLA 58 Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 ++ RE DL ++++ K SI AD VE++I A+YLD IEVA V +++ Sbjct: 59 ELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEVARATVLSWYQS 118 Query: 146 RALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQ 202 R ++D KT LQE+ + P Y VT G H+ FTV +I+G+ P Sbjct: 119 RLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHNQEFTVACDIAGIGAPVI 178 Query: 203 GMDCSKRAAEQVAAAEVLKRE 223 G S+R AEQ AA L++ Sbjct: 179 GKGTSRRKAEQAAAETALEQL 199 >gi|4768838|gb|AAD29637.1|AF116910_1 putative ribonuclease III [Homo sapiens] Length = 541 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 273 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 332 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD++ES Sbjct: 333 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 391 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 392 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 451 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 452 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 500 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 130 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 189 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 190 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 249 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 250 LHPLQLQEPNTDRQLIETSPV 270 Score = 42.6 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 46 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 76 >gi|312881718|ref|ZP_07741495.1| ribonuclease III [Vibrio caribbenthicus ATCC BAA-2122] gi|309370608|gb|EFP98083.1| ribonuclease III [Vibrio caribbenthicus ATCC BAA-2122] Length = 225 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 109/213 (51%), Gaps = 7/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M++ TLEK++GY F + L+ ALTH S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNS-PIVTLEKKLGYQFDDAELISLALTHRSA---NSKHNERLEFLGDSILSFVIADDLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV +T +++ RE L ++++ K SI AD VE Sbjct: 57 QRFPQINEGDMSRMRATLVRGKTLAELGREFQLGDYLKLGPGELKSGGFRRDSILADAVE 116 Query: 121 SLIAALYLDGGIE--VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+Y+D IE + A++ G ++D KT LQE+ + P Y VT Sbjct: 117 AIIGAIYMDSNIEVVRGIILAWYQGRLEAIEPGASQKDPKTRLQEFLQGRRKPLPAYTVT 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ FTV E++G+ P G S+R Sbjct: 177 NIKGEAHNQEFTVSCEVAGINQPVVGKGTSRRK 209 >gi|300783718|ref|YP_003764009.1| ribonuclease III [Amycolatopsis mediterranei U32] gi|299793232|gb|ADJ43607.1| ribonuclease III [Amycolatopsis mediterranei U32] Length = 234 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 60/211 (28%), Positives = 91/211 (43%), Gaps = 6/211 (2%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL +LTH S ++ ERLEFLGD +LGL+++ L+N EG+L+ Sbjct: 10 DPELLRLSLTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLYNTHPDLPEGQLAKLRA 69 Query: 77 SLVSAETCSQVARELDLASFIRVSSDL---RKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S+V+ ++VAR L SI AD +E++I A+YL+ GIE Sbjct: 70 SVVNMHALARVARGLGEGGLGAHLLLGKGEELTGGRDKASILADGLEAVIGAVYLEHGIE 129 Query: 134 VAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 +A V + A + + A G+ +GPDH FT Sbjct: 130 IARKLVHHLFDGLLAEAPLRGAGLDWKTSLQELTASAGLGVPEYKVEDTGPDHRKEFTAT 189 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V ++G G +K+ AEQ AA + Sbjct: 190 VLVAGRPLGHGAGSTKKEAEQKAAETAWRSL 220 >gi|160333099|ref|NP_001103942.1| ribonuclease 3 [Danio rerio] gi|124481653|gb|AAI33135.1| Zgc:158612 [Danio rerio] Length = 1289 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1026 KLTNFEDAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1085 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F + ++ V AD++ES Sbjct: 1086 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAITNDKTKRPVALRT-KTLADLLESF 1144 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1145 IAALYIDKDLEFVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1204 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1205 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1253 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 59/129 (45%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L++ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 883 NHNERLEFLGDAVVEFLTSVHLYHLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 942 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+GG+E A + + Sbjct: 943 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGGLEEAKDLFGRLLFNTEDMREVWLNYP 1002 Query: 158 KTELQEWAH 166 LQ Sbjct: 1003 PHPLQVQEP 1011 Score = 39.5 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 19/31 (61%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F R LL+ A+TH S ++ + Sbjct: 799 LDKLIGYMFKERCLLQLAMTHPSHHLNFGMN 829 >gi|258592173|emb|CBE68482.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [NC10 bacterium 'Dutch sediment'] Length = 246 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 71/214 (33%), Positives = 102/214 (47%), Gaps = 5/214 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEG 69 G+ F N +LLE ALTH S + Q Y+RLEFLGD + L +S L + +A EG Sbjct: 18 GHRFRNSTLLEAALTHPSSTDPSQADVRLRYQRLEFLGDAVWSLYVSDALVSLLPTASEG 77 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 EL+ R LVSA + +A+ LA + +S T + + E++I A+YLD Sbjct: 78 ELTQRRAGLVSATALADMAQLHGLAPLLLLSKGEELTGGRLKTRVLSSSFEAVIGAIYLD 137 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 GG+E + D KT LQ A + TP Y++ RSG H P F Sbjct: 138 GGLEAIRDLAREACVNTLEGE-HVTLDPKTALQHLAQSLLHATPRYRLIRRSGAPHAPTF 196 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V V + A+G +++ AE+ AA + L Sbjct: 197 EVEVIVGQSPIAKGKGRNRQEAERAAAQDALSSL 230 >gi|237750847|ref|ZP_04581327.1| ribonuclease III [Helicobacter bilis ATCC 43879] gi|229373292|gb|EEO23683.1| ribonuclease III [Helicobacter bilis ATCC 43879] Length = 228 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 3/203 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE+++ Y F N+ L +AL H S Y + ERLEFLGD +L L++ LF F Sbjct: 9 IHILEQKLNYTFKNKKKLAEALAHKSFKKPY--NNERLEFLGDAVLDLVVGEYLFETFTQ 66 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG LS SLV+ + ++A+ ++L ++ +S+ + SI ++ E+++A Sbjct: 67 KNEGSLSKMRASLVNEASFCKLAQSINLGEYLNLSTSEINNGGRLKASILSNAFEAIMAV 126 Query: 126 LYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +YL+ G++ + + D K+ LQE+ +FG P Y++ + GPD Sbjct: 127 IYLESGLDSVKRVFYPILHNEFRINEELLTSDYKSSLQEYTQERFGCIPSYEMLSQEGPD 186 Query: 185 HDPRFTVVVEISGLAPAQGMDCS 207 H FT+ V+I A S Sbjct: 187 HKKIFTMQVKIQNKIYASANGVS 209 >gi|332670942|ref|YP_004453950.1| ribonuclease III [Cellulomonas fimi ATCC 484] gi|332339980|gb|AEE46563.1| ribonuclease III [Cellulomonas fimi ATCC 484] Length = 258 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 4/220 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 L +++G + LL ALTH S +H + ERLEFLGD +LGL+++ L+ Sbjct: 6 DRLVEKLGVHL-DPELLVLALTHRSFAHEAGGIPTNERLEFLGDTVLGLVVTESLYRRHP 64 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + VS + VARELDL +++ + + SI +D +E+L Sbjct: 65 EQPEGALAKMRAATVSQRALAGVARELDLGAYVLLGKGELATGGADKDSILSDTLEALFG 124 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGP 183 A+YL G+E A VD++ + + + GP Sbjct: 125 AVYLAHGLETARVVVDRFVGPTLDAAAALGAGLDWKTSLQELSAALGLGAPSYDVVGEGP 184 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH FT I+G G +K+ AEQ AA + + Sbjct: 185 DHARTFTARAVIAGEPRGAGSGPAKKLAEQHAAEDAYRAL 224 >gi|124004144|ref|ZP_01688990.1| ribonuclease III [Microscilla marina ATCC 23134] gi|123990214|gb|EAY29713.1| ribonuclease III [Microscilla marina ATCC 23134] Length = 248 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 8/224 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHF 63 +++ IG+ N +L + AL+H+S S ++ES ERLE+LGD ILG +++ LF + Sbjct: 23 AIKQIIGHKPFNLALYQLALSHTSASKSLQDGFKESNERLEYLGDAILGAIVADYLFKKY 82 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +EG L+ +V+ E+ +Q++R++ + IR + + S+ D +E+L+ Sbjct: 83 PFKEEGFLTEIRARIVNRESLNQLSRKMGIQDLIRYEGNPK--SNFTYKSMGGDALEALV 140 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE--LQEWAHAKFGVTPEYKVTFRS 181 A+YLD G FV + L + + + K ++++ Sbjct: 141 GAVYLDKGFHYCRKFVVRKIVLGHLDLDDIIENNQNYKSIIIEWAQKNNRDLKFEIVREE 200 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G H +F V I A+G SK+ AEQ AA + + + Sbjct: 201 GSKHQRQFIAQVIIDDEPVAKGSGFSKKKAEQAAAEKTCRTLKL 244 >gi|165973380|ref|NP_001107152.1| drosha, ribonuclease type III [Xenopus (Silurana) tropicalis] gi|163916533|gb|AAI57521.1| rnasen protein [Xenopus (Silurana) tropicalis] Length = 1325 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL + T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1061 KLTKFEEAIGVEFTHVRLLARVFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1120 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F + ++ V AD++ES Sbjct: 1121 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAITNDKTKRPVVLRT-KTLADLLESF 1179 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1180 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1239 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H +TV V G G S + AE AA + L++ Sbjct: 1240 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1288 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 57/125 (45%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F +EG L+ ++V + + +A++L+L F+ Sbjct: 918 NHNERLEFLGDAVVEFLTSVHLYYLFPLLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 977 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+L+ A+YL+GG+E A + + Sbjct: 978 LYAHGPDLCRESDLRHAMANCFEALMGAVYLEGGLEEAKQLFGRLLFGNQDLRDVWLNYP 1037 Query: 158 KTELQ 162 LQ Sbjct: 1038 LHPLQ 1042 Score = 41.1 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 834 LDKLIGYIFTDRCLLQLAMTHPSHHLNFGMN 864 >gi|224536731|ref|ZP_03677270.1| hypothetical protein BACCELL_01607 [Bacteroides cellulosilyticus DSM 14838] gi|224521647|gb|EEF90752.1| hypothetical protein BACCELL_01607 [Bacteroides cellulosilyticus DSM 14838] Length = 296 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 95/227 (41%), Gaps = 5/227 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57 Y K +G+ N L ++AL H S S + ERLEFLGD IL ++ Sbjct: 16 DKESYFCFYKILGFYPRNIQLYQQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGD 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +++ HF+ +EG L+ + +V ET +++A E+ L ++ S+ + Sbjct: 76 IVYKHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSTRSSSHNSYMYGNAFEA 135 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 + ++ + + K + S K K++L EW+ + Sbjct: 136 FIGAIYLDQGYERCKRFMEEKIFKNYIDLDKMSRKEVNF-KSKLIEWSQKSKVEVSFELI 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 D++P F + I G++ +G SK+ ++Q AA LK+ Sbjct: 195 EQFLDEDYNPMFHTEIRIEGISAGKGTGYSKKESQQNAAQAALKKIK 241 >gi|254481213|ref|ZP_05094458.1| ribonuclease III [marine gamma proteobacterium HTCC2148] gi|214038376|gb|EEB79038.1| ribonuclease III [marine gamma proteobacterium HTCC2148] Length = 232 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 73/210 (34%), Positives = 115/210 (54%), Gaps = 6/210 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L++ +GY FA++SLL+ ALTH S+ + ERLEFLGD I+ +I+ L+ F A Sbjct: 9 ERLQRALGYQFADKSLLQLALTHRSVG---GRNNERLEFLGDSIVNHIIAEALYRQFPDA 65 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG++S SLV +T ++VARELDL + + RK SI AD +E++ A+ Sbjct: 66 REGDMSRMRASLVKGDTLAEVARELDLGEHLLLGPGERKSGGKRRGSILADGLEAVAGAI 125 Query: 127 YLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +D + + V ++++R +DAKT LQE+ + PEY++ G D Sbjct: 126 LIDSDVAACRSCVLTWFRERLDLLSLDGADKDAKTLLQEYLQGRRSPLPEYELLGVVGED 185 Query: 185 HDPRFTVVVEISG-LAPAQGMDCSKRAAEQ 213 H+ +F V I+ + +G S+R AEQ Sbjct: 186 HEQQFHVACRIAKPVLVVEGDGSSRRKAEQ 215 >gi|167764094|ref|ZP_02436221.1| hypothetical protein BACSTE_02477 [Bacteroides stercoris ATCC 43183] gi|167698210|gb|EDS14789.1| hypothetical protein BACSTE_02477 [Bacteroides stercoris ATCC 43183] Length = 315 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 K +G+ N E+AL H S S + ERLEFLGD IL ++ +++ HF+ Sbjct: 23 FYKILGFFPRNIRFYEQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFE 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L ++ S+ + + ++ Sbjct: 83 GRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSTRSSSHNSYMYGNAFEAFIGAIYL 142 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + K + S K K++L EW+ + D Sbjct: 143 DQGYERCKQFMEKKILKNYIDLDKMSRKEVNF-KSKLIEWSQKTKMEVSFELIEQFLDQD 201 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 ++P F V I GL+ G SK+ ++Q AA LK+ Sbjct: 202 YNPMFHTEVRIEGLSAGTGTGYSKKESQQNAAQMALKKIK 241 >gi|73963944|ref|XP_868522.1| PREDICTED: similar to Endoribonuclease Dicer (Helicase with RNase motif) (Helicase-MOI) isoform 3 [Canis familiaris] Length = 821 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 565 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 624 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 625 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 684 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 685 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 744 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 745 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 800 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 801 SAAARRALRSLK 812 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 54/185 (29%), Gaps = 16/185 (8%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 192 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 249 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 VS ++ ++ L + E Sbjct: 250 VSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSNADKWEKDEMT 302 Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 D L D + E W K E +H I + Sbjct: 303 KDCMLANGKLDEDFEEDDEEEEDLMWRAPKEDADYEDDFLEYD-QEHIK------FIDNM 355 Query: 199 APAQG 203 G Sbjct: 356 LMGSG 360 >gi|330446941|ref|ZP_08310592.1| ribonuclease III [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491132|dbj|GAA05089.1| ribonuclease III [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 224 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 103/207 (49%), Gaps = 6/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L++++GY F N L+ ALTH S ERLEFLGD IL +++ L++ F S Sbjct: 6 NRLQRKLGYQFNNSELMTLALTHRSA---NGNHNERLEFLGDSILSFVVADDLYHRFPSV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV +T +++ RE +L + + K SI AD VE++I A+ Sbjct: 63 DEGDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFRRDSILADCVEAIIGAI 122 Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD IE + ++ G ++D KT LQE + P Y V G Sbjct: 123 YLDSDIEKVREIVLTWYKTRLETIEPGINQKDPKTRLQECLQGRRLPLPAYTVIKVQGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210 H+ FTV +++GL P G S+R Sbjct: 183 HNQEFTVQCDVTGLDKPVIGKGGSRRK 209 >gi|307195788|gb|EFN77602.1| Endoribonuclease Dcr-1 [Harpegnathos saltator] Length = 1807 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 56/253 (22%), Positives = 87/253 (34%), Gaps = 29/253 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLL 59 M Y LEK IGY F + S L +A TH+S + + Y+RLEFLGD +L LI+ L Sbjct: 1545 MMLDGYEELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHL 1604 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + G L+ ++LV+ + +A + R S V + IQ + Sbjct: 1605 YEDSRQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENG 1664 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWK------------------------QRALKSGKFRR 155 S+ YL G E + K + Sbjct: 1665 HSISEEYYLIGKEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSE 1724 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAA 211 + + T + G R V V++ G +G+ + R A Sbjct: 1725 IEQFSTNVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIA 1784 Query: 212 EQVAAAEVLKREG 224 + AA LK+ Sbjct: 1785 KCTAAKCALKKLK 1797 Score = 43.4 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 SL+ +ALT S+ + + ERLE +GD L I+T L+ +D+ EG+LS + V Sbjct: 1272 PSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQV 1329 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 S ++ R+ L + + D +E Sbjct: 1330 SNLNLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELE 1370 >gi|332970079|gb|EGK09076.1| ribonuclease III [Kingella kingae ATCC 23330] Length = 241 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 6/221 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S+L+ ++GY F + L++ALTH S + ++YERLEF+GD IL +I+ +LF F + Sbjct: 11 SSLQTKLGYIFKQPTWLQQALTHRSA---HSQNYERLEFVGDAILDYVITLMLFEAFPNL 67 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LSV LV T ++VAREL L + + K SI AD +E++ AA+ Sbjct: 68 PEGRLSVLRTHLVKEATLAEVARELGLGKALILGVGELKSGGYDRASILADALEAIFAAI 127 Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D + A + + + + + ++ + +D KT LQE A TP+Y++ ++G Sbjct: 128 RFDADLPTAERVIRQLFAERVQQIQVQQPDKDHKTRLQEALQAHRLPTPKYRIERQTGEG 187 Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREG 224 D F V ++ L S+RAAEQ A + L+ Sbjct: 188 SDSHFDVSCDLGELGHITYASGSSRRAAEQECAKQALQWLN 228 >gi|296475171|gb|DAA17286.1| endoribonuclease Dicer [Bos taurus] Length = 1922 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111 G L+ ++LV+ + +A + D + + S V Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786 Query: 112 -------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 D+ ESL A+Y+D G+ + + Y R L Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +T +D + V VE+ G +G+ S R A+ Sbjct: 1847 SANVPRSPVRELLEMEPEITKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1902 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1903 SAAARRALRSLK 1914 Score = 38.0 bits (86), Expect = 0.94, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 57/186 (30%), Gaps = 17/186 (9%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL-LFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T+ L A EG LS + Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSYMRSK 1350 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 VS ++ ++ L S + VS + E Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVSIFDPPVNG-------LPPGYVVNQDKSNTEKWEKDEM 1403 Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 D L + + E W K E +H I Sbjct: 1404 TKDCMLANGKLDDDFEEEEEEEEDLMWRAHKEDADDEDDFLEYD-QEHIK------FIDN 1456 Query: 198 LAPAQG 203 + G Sbjct: 1457 MLMGSG 1462 >gi|73963940|ref|XP_537547.2| PREDICTED: similar to dicer1 isoform 1 [Canis familiaris] Length = 1923 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1846 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1847 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1902 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1903 SAAARRALRSLK 1914 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 54/185 (29%), Gaps = 16/185 (8%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 VS ++ ++ L + E Sbjct: 1352 VSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSNADKWEKDEMT 1404 Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 D L D + E W K E +H I + Sbjct: 1405 KDCMLANGKLDEDFEEDDEEEEDLMWRAPKEDADYEDDFLEYD-QEHIK------FIDNM 1457 Query: 199 APAQG 203 G Sbjct: 1458 LMGSG 1462 >gi|42733596|ref|NP_976235.1| endoribonuclease Dicer [Bos taurus] gi|257051053|sp|Q6TUI4|DICER_BOVIN RecName: Full=Endoribonuclease Dicer gi|38679195|gb|AAR26432.1| dicer [Bos taurus] Length = 1923 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111 G L+ ++LV+ + +A + D + + S V Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786 Query: 112 -------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 D+ ESL A+Y+D G+ + + Y R L Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +T +D + V VE+ G +G+ S R A+ Sbjct: 1847 SANVPRSPVRELLEMEPEITKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1902 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1903 SAAARRALRSLK 1914 Score = 38.0 bits (86), Expect = 0.94, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 57/186 (30%), Gaps = 17/186 (9%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL-LFNHFDSAKEGELSVRFNS 77 N L+ +ALT S+ S + + ERLE LGD L I+T+ L A EG LS + Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSYMRSK 1350 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 VS ++ ++ L S + VS + E Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVSIFDPPVNG-------LPPGYVVNQDKSNTEKWEKDEM 1403 Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 D L + + E W K E +H I Sbjct: 1404 TKDCMLANGKLDDDFEEEEEEEEDLMWRAHKEDADDEDDFLEYD-QEHIK------FIDN 1456 Query: 198 LAPAQG 203 + G Sbjct: 1457 MLMGSG 1462 >gi|194225335|ref|XP_001496219.2| PREDICTED: similar to Endoribonuclease Dicer (Helicase with RNase motif) (Helicase MOI) [Equus caballus] Length = 1785 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1529 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1588 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1589 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1648 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1649 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1708 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1709 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1764 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1765 SAAARRALRSLK 1776 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1158 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1215 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1216 VSNCNLYRLGKKKG 1229 >gi|73963946|ref|XP_868526.1| PREDICTED: similar to dicer1 isoform 4 [Canis familiaris] Length = 1900 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1644 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1703 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1704 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1763 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1764 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1823 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1824 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1879 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1880 SAAARRALRSLK 1891 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 54/185 (29%), Gaps = 16/185 (8%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 VS ++ ++ L + E Sbjct: 1352 VSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSNADKWEKDEMT 1404 Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 D L D + E W K E +H I + Sbjct: 1405 KDCMLANGKLDEDFEEDDEEEEDLMWRAPKEDADYEDDFLEYD-QEHIK------FIDNM 1457 Query: 199 APAQG 203 G Sbjct: 1458 LMGSG 1462 >gi|326920976|ref|XP_003206741.1| PREDICTED: endoribonuclease Dicer-like [Meleagris gallopavo] Length = 1921 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y+F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1665 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1784 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1900 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1901 SAAARRALRSLK 1912 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1352 VSNCNLYRLGKKKG 1365 >gi|254281274|ref|NP_001156875.1| endoribonuclease Dicer [Taeniopygia guttata] Length = 1921 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y+F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1665 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1784 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1900 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1901 SAAARRALRSLK 1912 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1352 VSNCNLYRLGKKKG 1365 >gi|94957752|ref|NP_001035555.1| endoribonuclease Dicer [Gallus gallus] gi|257051054|sp|Q25BN1|DICER_CHICK RecName: Full=Endoribonuclease Dicer gi|90074858|dbj|BAE87103.1| Dicer protein [Gallus gallus] Length = 1921 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y+F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1665 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1784 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1900 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1901 SAAARRALRSLK 1912 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1352 VSNCNLYRLGKKKG 1365 >gi|255326576|ref|ZP_05367653.1| ribonuclease III [Rothia mucilaginosa ATCC 25296] gi|255296316|gb|EET75656.1| ribonuclease III [Rothia mucilaginosa ATCC 25296] Length = 229 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 104/225 (46%), Gaps = 6/225 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 ++ L KR+G + +LTH S + E ERLEFLGD +L L I+ ++ Sbjct: 6 SVDTRELRKRLGVDI-DAETFLLSLTHRSYAFENPGVEHNERLEFLGDSVLSLAIAEEVY 64 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGEL + +VS ++VAR+LDL +I + + SI AD +E Sbjct: 65 RRYPDLPEGELVKLHHVVVSTVALAKVARDLDLGRYILLGKGEIHTGGADKDSILADTME 124 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ YL+ G E A V + K RD KTEL A A+ Y+VT Sbjct: 125 AIFGLTYLECGREAARDLVLRLIAPLLDDEKVLNSGRDWKTELLNLATARGWGDVRYEVT 184 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH +T V ++ G+ SK+ AE++AA + + Sbjct: 185 G-EGPDHARVYTAVAIVANQQTGTGVGPSKKEAERLAAEQAYRVL 228 >gi|313844119|ref|YP_004061782.1| hypothetical protein OlV1_149c [Ostreococcus lucimarinus virus OlV1] gi|312599504|gb|ADQ91526.1| hypothetical protein OlV1_149c [Ostreococcus lucimarinus virus OlV1] Length = 230 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 4/226 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTL 58 +EK +G N SL +A TH S Y ES+E LEF+GD +LG +I+ Sbjct: 1 MNFNQQDIEKLVGTKIKNLSLYHRAFTHKSALKEYEQFNESFETLEFMGDSVLGFIITKF 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF+ ++ +EG L+ LV +ET + +A ++ L + + + ++ + I DV Sbjct: 61 LFDRYEERQEGFLTKARTKLVRSETLADIALKMGLNNMVLMDEKGMRNNWNNNPKILEDV 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+L+ A+Y+D G+ A FV + + + Sbjct: 121 FEALVGAIYMDLGLLHAKEFVLRIYNDPNFIDLNKIMIDDNFKDHLMKYCQIMNIPLPEY 180 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G H+ F + I+G +G SK+ AEQ+AA ++ Sbjct: 181 RVVG-HHEGIFYIDTYINGQFGGRGEAKSKKQAEQLAARAFFEQLK 225 >gi|237720469|ref|ZP_04550950.1| ribonuclease III [Bacteroides sp. 2_2_4] gi|229450220|gb|EEO56011.1| ribonuclease III [Bacteroides sp. 2_2_4] Length = 328 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 11/221 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +G+ N L E+AL H S S + ERLEFLGD IL ++ +++ F+ Sbjct: 12 FYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L I+ S+ + + + E+ I Sbjct: 72 GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHN----SYMYGNAFEAFIG 127 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G E F+++ R + K R + K++L EW+ + Sbjct: 128 AIYLDQGYERCKLFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL 187 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 D +P F V I GL G SK+ ++Q AA +K+ Sbjct: 188 DHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 228 >gi|160883983|ref|ZP_02064986.1| hypothetical protein BACOVA_01957 [Bacteroides ovatus ATCC 8483] gi|156110713|gb|EDO12458.1| hypothetical protein BACOVA_01957 [Bacteroides ovatus ATCC 8483] Length = 352 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 11/221 (4%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +G+ N L E+AL H S S + ERLEFLGD IL ++ +++ F+ Sbjct: 36 FYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 95 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L I+ S+ + + + E+ I Sbjct: 96 GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHN----SYMYGNAFEAFIG 151 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD G E F+++ R + K R + K++L EW+ + Sbjct: 152 AIYLDQGYERCKLFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL 211 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 D +P F V I GL G SK+ ++Q AA +K+ Sbjct: 212 DHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252 >gi|160888577|ref|ZP_02069580.1| hypothetical protein BACUNI_00994 [Bacteroides uniformis ATCC 8492] gi|156861891|gb|EDO55322.1| hypothetical protein BACUNI_00994 [Bacteroides uniformis ATCC 8492] Length = 306 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 + +G+ + + ++AL H SIS ++ + ERLEFLGD IL ++ +++ HF+ Sbjct: 37 FYRILGFFPRDIKVYQQALLHKSISMRSEKGRPINNERLEFLGDAILDAIVGDIVYRHFE 96 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L ++ S+ + + ++ Sbjct: 97 GRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSTRSSSHNSYMYGNAFEAFIGAIYL 156 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D + + K + S K K++L EW+ + + Sbjct: 157 DQGYDRCKQFMEEKIFKNYIDLDKMSRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDEE 215 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 ++P F V I G++ G SK+ ++Q AA LK+ Sbjct: 216 YNPMFHTEVRIEGISAGTGTGYSKKESQQNAAQMALKKIK 255 >gi|149926460|ref|ZP_01914721.1| ribonuclease III [Limnobacter sp. MED105] gi|149824823|gb|EDM84037.1| ribonuclease III [Limnobacter sp. MED105] Length = 226 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 71/212 (33%), Positives = 98/212 (46%), Gaps = 6/212 (2%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 Y+F +++LL ALTH S S + ERLEFLGD +L S LLF EG++S Sbjct: 3 YSFKDQALLRLALTHRSYSSHH---NERLEFLGDSVLNCAASILLFETHPDMDEGKMSRV 59 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 + LV + + V R L L ++ + + + + SI AD +E+L A+ LD G E Sbjct: 60 RSHLVKQDCLAMVGRNLLLDQYLFLGAGELRSAKTIKDSIVADALEALFGAILLDSGFEA 119 Query: 135 AGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 A V + K +D KT LQE K P Y+V G P F+V Sbjct: 120 ARDCVVRLLKPVMLETPIESMGKDPKTRLQELLQGKRMKLPMYRVLVEGGTSASPEFSVE 179 Query: 193 VEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 + L + G S+R AEQ AA VL Sbjct: 180 CAVEDLEITKVGQGHSRRVAEQHAAQAVLIEL 211 >gi|270294929|ref|ZP_06201130.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317477924|ref|ZP_07937108.1| ribonuclease III [Bacteroides sp. 4_1_36] gi|270274176|gb|EFA20037.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316905940|gb|EFV27710.1| ribonuclease III [Bacteroides sp. 4_1_36] Length = 309 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 + +G+ + + ++AL H SIS ++ + ERLEFLGD IL ++ +++ HF+ Sbjct: 40 FYRILGFFPRDIKVYQQALLHKSISMRSEKGRPINNERLEFLGDAILDAIVGDIVYRHFE 99 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L ++ S+ + + ++ Sbjct: 100 GRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSTRSSSHNSYMYGNAFEAFIGAIYL 159 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D + + K + S K K++L EW+ + + Sbjct: 160 DQGYDRCKQFMEEKIFKNYIDLDKMSRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDEE 218 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 ++P F V I G++ G SK+ ++Q AA LK+ Sbjct: 219 YNPMFHTEVRIEGISAGTGTGYSKKESQQNAAQMALKKIK 258 >gi|114765524|ref|ZP_01444632.1| Ribonuclease III [Pelagibaca bermudensis HTCC2601] gi|114542117|gb|EAU45149.1| Ribonuclease III [Roseovarius sp. HTCC2601] Length = 227 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 87/211 (41%), Positives = 123/211 (58%), Gaps = 1/211 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + LE+R+G+ F LL +ALTHSS+S +E +RLEFLGDR+LGL+++ L Sbjct: 1 MKRSAEIIALEERLGHRFDRPELLRRALTHSSMSAPGREDNQRLEFLGDRVLGLVMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 +A EG+L+ R+N+LV ETC+ VARE+DL + +++ ++ D + Sbjct: 61 LADDRNASEGQLAPRYNALVRKETCADVAREVDLGAALKLGRSEMMSGGRRKMALLGDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+YLD G E A V + W R + + RDAKT LQEWA A+ P Y T Sbjct: 121 EAVIAAVYLDAGFEAAKDLVRRLWGDRVTRVDEDARDAKTSLQEWAQARGMPPPAYVETA 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 RSGPDH P FT+ +S AQ +KR Sbjct: 181 RSGPDHAPVFTIEARLSSGETAQATAGAKRK 211 >gi|126290301|ref|XP_001367933.1| PREDICTED: similar to Dicer protein [Monodelphis domestica] Length = 1923 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1667 FENFEKKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1846 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1847 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1902 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1903 SAAARRALRSLK 1914 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1296 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1353 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1354 VSNCNLYRLGKKKG 1367 >gi|260642610|ref|ZP_05416578.2| ribonuclease III [Bacteroides finegoldii DSM 17565] gi|260621352|gb|EEX44223.1| ribonuclease III [Bacteroides finegoldii DSM 17565] Length = 270 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 91/218 (41%), Gaps = 5/218 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +G+ N L E+AL H S S + ERLEFLGD IL ++ +++ HF+ Sbjct: 23 FYRILGFYPRNIQLYEQALLHKSTSLRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFE 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L I+ S+ + + ++ Sbjct: 83 GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHNSYMYGNAFEAFIGAIYL 142 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + + + S K K++L EW+ + D Sbjct: 143 DQGYERCKQFMEERIINRYIDLDILSRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDRD 201 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +P F V I G G SK+ ++Q AA +K+ Sbjct: 202 SNPVFQTEVRIEGFPAGTGTGYSKKESQQNAAQMAIKK 239 >gi|153807268|ref|ZP_01959936.1| hypothetical protein BACCAC_01546 [Bacteroides caccae ATCC 43185] gi|149130388|gb|EDM21598.1| hypothetical protein BACCAC_01546 [Bacteroides caccae ATCC 43185] Length = 329 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 5/218 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +G+ N L E+AL H S S + ERLEFLGD IL ++ +++ F+ Sbjct: 36 FYRILGFYPRNIQLYEQALLHKSSSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 95 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L I+ S+ + + ++ Sbjct: 96 GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHNSYMYGNAFEAFIGAIYL 155 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + + S K K++L EW+ + D Sbjct: 156 DQGYERCKQFMEQRIINRYIDLDKISRKEVNF-KSKLIEWSQKSKLEVSFELIEQFLDQD 214 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +P F V I GL G SK+ ++Q AA +K+ Sbjct: 215 SNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252 >gi|257051057|sp|Q8R418|DICER_MOUSE RecName: Full=Endoribonuclease Dicer; AltName: Full=Double-strand-specific ribonuclease mDCR-1 Length = 1916 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1660 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1719 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114 G L+ ++LV+ + +A + D + + S V Sbjct: 1720 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1779 Query: 115 ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 D+ ESL A+Y+D G+ + + Y + L Sbjct: 1780 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1839 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1840 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1895 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1896 SAAARRALRSLK 1907 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1351 VSNCNLYRLGKKKG 1364 >gi|148686840|gb|EDL18787.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Mus musculus] Length = 1916 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1660 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1719 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114 G L+ ++LV+ + +A + D + + S V Sbjct: 1720 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1779 Query: 115 ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 D+ ESL A+Y+D G+ + + Y + L Sbjct: 1780 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1839 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1840 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1895 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1896 SAAARRALRSLK 1907 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1351 VSNCNLYRLGKKKG 1364 >gi|148686841|gb|EDL18788.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Mus musculus] Length = 1908 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1652 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1711 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114 G L+ ++LV+ + +A + D + + S V Sbjct: 1712 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1771 Query: 115 ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 D+ ESL A+Y+D G+ + + Y + L Sbjct: 1772 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1831 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1832 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1887 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1888 SAAARRALRSLK 1899 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1285 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1342 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1343 VSNCNLYRLGKKKG 1356 >gi|117168271|ref|NP_683750.2| endoribonuclease Dicer [Mus musculus] gi|225000568|gb|AAI72621.1| Dicer1, Dcr-1 homolog (Drosophila) [synthetic construct] Length = 1906 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1650 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1709 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114 G L+ ++LV+ + +A + D + + S V Sbjct: 1710 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1769 Query: 115 ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 D+ ESL A+Y+D G+ + + Y + L Sbjct: 1770 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1829 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1830 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1885 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1886 SAAARRALRSLK 1897 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1283 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1340 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1341 VSNCNLYRLGKKKG 1354 >gi|19072784|gb|AAL84637.1|AF484523_1 endoribonuclease Dicer [Mus musculus] Length = 361 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 105 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 164 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114 G L+ ++LV+ + +A + D + + S V Sbjct: 165 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 224 Query: 115 ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 D+ ESL A+Y+D G+ + + Y + L Sbjct: 225 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 284 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 285 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 340 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 341 SAAARRALRSLK 352 >gi|20385913|gb|AAM21495.1|AF430845_1 dicer-like protein [Mus musculus] Length = 1917 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1661 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1720 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114 G L+ ++LV+ + +A + D + + S V Sbjct: 1721 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1780 Query: 115 ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 D+ ESL A+Y+D G+ + + Y + L Sbjct: 1781 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1840 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1841 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1896 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1897 SAAARRALRSLK 1908 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1352 VSNCNLYRLGKKKG 1365 >gi|74204500|dbj|BAE23515.1| unnamed protein product [Mus musculus] Length = 514 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 258 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 317 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114 G L+ ++LV+ + +A + D + + S V Sbjct: 318 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 377 Query: 115 ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 D+ ESL A+Y+D G+ + + Y + L Sbjct: 378 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 437 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 438 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 493 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 494 SAAARRALRSLK 505 >gi|37360146|dbj|BAC98051.1| mKIAA0928 protein [Mus musculus] Length = 1475 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1219 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1278 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114 G L+ ++LV+ + +A + D + + S V Sbjct: 1279 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1338 Query: 115 ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 D+ ESL A+Y+D G+ + + Y + L Sbjct: 1339 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1398 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1399 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1454 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1455 SAAARRALRSLK 1466 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 852 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 909 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 910 VSNCNLYRLGKKKG 923 >gi|22830885|dbj|BAC15765.1| double-strand-specific ribonuclease MDCR [Mus musculus] Length = 1906 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1650 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1709 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114 G L+ ++LV+ + +A + D + + S V Sbjct: 1710 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1769 Query: 115 ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 D+ ESL A+Y+D G+ + + Y + L Sbjct: 1770 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1829 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1830 SANVPRSPVRELLEMEPETAEFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1885 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1886 SAAARRALRSLK 1897 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1283 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1340 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1341 VSNCNLYRLGKKKG 1354 >gi|71083743|ref|YP_266463.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062] gi|91763221|ref|ZP_01265185.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002] gi|90101634|sp|Q4FLS9|RNC_PELUB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71062856|gb|AAZ21859.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062] gi|91717634|gb|EAS84285.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002] Length = 222 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 112/205 (54%), Gaps = 3/205 (1%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F+++ + K+LTH S + E++EFLGDR+LGL+I+ L + KEG L +F Sbjct: 16 FSDQKIFIKSLTHKSFDSIN--NNEKIEFLGDRVLGLIIAKKLLELYPDEKEGVLDKKFA 73 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 SLV+ + C ++A++++L +I + + I AD +E+LI A+YLD G+ Sbjct: 74 SLVNKKKCLEIAKKIELEKYIL-VLNPKNKKIEIEDKIVADCLEALIGAIYLDKGLNFTE 132 Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 F+ W + S + DAKT+LQE++ F V P YK+ +GP H P F V V++ Sbjct: 133 RFILNLWSEHITASVITQIDAKTKLQEYSLKIFKVLPIYKLISNTGPRHKPLFKVAVKLK 192 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLK 221 SK+ AEQ AA+ L+ Sbjct: 193 NTKFFTAEGTSKKDAEQNAASLCLQ 217 >gi|221194650|ref|ZP_03567707.1| ribonuclease III [Atopobium rimae ATCC 49626] gi|221185554|gb|EEE17944.1| ribonuclease III [Atopobium rimae ATCC 49626] Length = 243 Score = 115 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 79/213 (37%), Positives = 99/213 (46%), Gaps = 4/213 (1%) Query: 1 MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57 M R EK + F R L+E ALTH S SYERLEFLGD ILG +++T Sbjct: 1 MKTYERIRAAEKICNHVFKRRDLIEAALTHPSAVEDKPVSASYERLEFLGDSILGAIVAT 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + EGEL+ SLVS T S VA L + I R M S + Sbjct: 61 DLFERYPEMDEGELTRLKISLVSGHTLSLVAEALGIGPLIITGVSERGTGGRGMRSALEN 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYK 176 V ES++ ALYLD G E FV + + + K+ LQE A TPEY+ Sbjct: 121 VYESIVGALYLDAGYEPTHEFVIRTLAPHISPALAERSVSPKSRLQEAVQANGKSTPEYE 180 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + SGP H P F VV + G +G SK+ Sbjct: 181 LVSESGPAHTPTFISVVSVDGCKVGRGQGHSKK 213 >gi|189465040|ref|ZP_03013825.1| hypothetical protein BACINT_01384 [Bacteroides intestinalis DSM 17393] gi|189437314|gb|EDV06299.1| hypothetical protein BACINT_01384 [Bacteroides intestinalis DSM 17393] Length = 291 Score = 115 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 5/227 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57 Y K +G+ N L ++AL H S S + ERLEFLGD IL ++ Sbjct: 16 DKESYLCFYKILGFYPRNIQLYQQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGD 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +++ HF+ +EG L+ + +V ET +++A E+ L ++ S+ + Sbjct: 76 IVYKHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSARSSSHNSYMYGNAFEA 135 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 + ++ + K + + K++L EW+ + Sbjct: 136 FIGAIYLDQGY-KRCKRFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQKSKVEVSFELI 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 D++P F + I G+ +G SK+ ++Q AA LK+ Sbjct: 195 EQFLDEDYNPMFHTEIRIEGIPAGKGTGYSKKESQQNAAQAALKKIK 241 >gi|254881153|ref|ZP_05253863.1| ribonuclease III [Bacteroides sp. 4_3_47FAA] gi|294777572|ref|ZP_06743023.1| ribonuclease III [Bacteroides vulgatus PC510] gi|254833946|gb|EET14255.1| ribonuclease III [Bacteroides sp. 4_3_47FAA] gi|294448640|gb|EFG17189.1| ribonuclease III [Bacteroides vulgatus PC510] Length = 308 Score = 115 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 5/227 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57 Y K +G+ + S+ E+AL H S+S + ERLEFLGD IL +++ Sbjct: 16 DRESYLRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVAD 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +++ F+ +EG L+ + +V ET +++A E+ L I+ ++ + Sbjct: 76 IVYKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTARQSSHNSYMCGNAFEA 135 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +V ++ + K + + K++L EW+ + Sbjct: 136 LVGAIYLDRGYR-ACKYFMEHRIIGPYINLEKISRKEVNFKSKLIEWSQKNRFEVTFELI 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T ++P F V + G++ +G SK+ ++Q+AA L + Sbjct: 195 TQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGKIK 241 >gi|150003618|ref|YP_001298362.1| putative ribonuclease III [Bacteroides vulgatus ATCC 8482] gi|189043292|sp|A6KZ76|RNC_BACV8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|149932042|gb|ABR38740.1| putative ribonuclease III [Bacteroides vulgatus ATCC 8482] Length = 308 Score = 115 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 5/227 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57 Y K +G+ + S+ E+AL H S+S + ERLEFLGD IL +++ Sbjct: 16 DRESYLRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVAD 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +++ F+ +EG L+ + +V ET +++A E+ L I+ ++ + Sbjct: 76 IVYKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTARQSSHNSYMCGNAFEA 135 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +V ++ + K + + K++L EW+ + Sbjct: 136 LVGAIYLDRGYR-ACKYFMEHRIIGPYINLEKISRKEVNFKSKLIEWSQKNRFEVTFELI 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T ++P F V + G++ +G SK+ ++Q+AA L + Sbjct: 195 TQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGKIK 241 >gi|283457874|ref|YP_003362474.1| dsRNA-specific ribonuclease [Rothia mucilaginosa DY-18] gi|283133889|dbj|BAI64654.1| dsRNA-specific ribonuclease [Rothia mucilaginosa DY-18] Length = 229 Score = 115 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 104/225 (46%), Gaps = 6/225 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 ++ L KR+G + +LTH S + E ERLEFLGD +L L I+ ++ Sbjct: 6 SVDTRELRKRLGVDI-DAETFLLSLTHRSYAFENPGVEHNERLEFLGDSVLSLAIAEEVY 64 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EGEL + +VS ++VAR+LDL +I + + SI AD +E Sbjct: 65 RRYPDLPEGELVKLHHVVVSTVALAKVARDLDLGRYILLGKGEIHTGGADKDSILADTME 124 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ YL+ G E A V + K RD KTEL A A+ Y+VT Sbjct: 125 AIFGLTYLECGREAARDLVLRLIAPLLDDEKVLNSGRDWKTELLNLATARGWGDVRYEVT 184 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH +T V ++ G+ SK+ AE++AA + + Sbjct: 185 G-EGPDHARVYTAVAIVANQQAGTGVGPSKKEAERLAAEQAYRVL 228 >gi|226305918|ref|YP_002765878.1| ribonuclease III [Rhodococcus erythropolis PR4] gi|226185035|dbj|BAH33139.1| probable ribonuclease III [Rhodococcus erythropolis PR4] Length = 257 Score = 115 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 62/225 (27%), Positives = 93/225 (41%), Gaps = 7/225 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 + L +G LL ALTH S ++ + ERLEFLGD +LG+ ++ L+ Sbjct: 15 NHDKLLAAVGVDIE-PGLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTENLYLS 73 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---RKDVCSFMTSIQADVV 119 EG+L+ S+V+ ++VAR L SI AD + Sbjct: 74 HPDKSEGDLAKIRASVVNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADGM 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVT 178 ES++ A++L GI+ A V + ++ + A+ G Sbjct: 134 ESILGAIHLQHGIDTARRVVLDLFDDLLTRAPLLGAGLDWKTSLQELTAEHGAGVPVYEI 193 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GPDHD FT V IS G+ SK+ AEQ AA+ K Sbjct: 194 TATGPDHDKEFTATVLISDKPLGVGVGRSKKEAEQKAASSAWKTM 238 >gi|75676109|ref|YP_318530.1| ribonuclease III [Nitrobacter winogradskyi Nb-255] gi|90101631|sp|Q3SRB3|RNC_NITWN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|74420979|gb|ABA05178.1| RNAse III [Nitrobacter winogradskyi Nb-255] Length = 266 Score = 115 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 88/202 (43%), Positives = 122/202 (60%), Gaps = 3/202 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63 + +E+R+G+ FA+ SLL A TH S S + +SY+RLEFLGD +LGL++S +L+ F Sbjct: 44 AAIEQRLGHTFADISLLTTAFTHVSALKSSRGRCDSYQRLEFLGDHVLGLVVSDMLYRAF 103 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS R LV ETC VA+ LDL +++ + S+ D+ E++I Sbjct: 104 PKADEGELSKRLADLVRKETCIDVAKSLDLQEGVKLGAVGAGAGARLRRSVLGDICEAVI 163 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG A FV++ W +R K + RD KT LQEWA K TP Y+ R+GP Sbjct: 164 GAVYLDGGYAAAAAFVERNWLERMRKPVRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 223 Query: 184 DHDPRFTVVVEISGLAPAQGMD 205 HDPRF V VE+ GL ++G+ Sbjct: 224 HHDPRFRVAVELPGLESSEGIG 245 >gi|193787170|dbj|BAG52376.1| unnamed protein product [Homo sapiens] Length = 820 Score = 115 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 564 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 623 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 624 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 683 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 684 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 743 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 744 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 799 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 800 SAAARRALRSLK 811 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 181 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 238 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS + VS ++ ++ L + Sbjct: 239 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 291 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E D L D + E W K E +H Sbjct: 292 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 349 Query: 189 FTVVVEISGLAPAQG 203 I + G Sbjct: 350 -----FIDNMLMGSG 359 >gi|298387131|ref|ZP_06996685.1| ribonuclease 3 [Bacteroides sp. 1_1_14] gi|298260281|gb|EFI03151.1| ribonuclease 3 [Bacteroides sp. 1_1_14] Length = 324 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 90/218 (41%), Gaps = 5/218 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +G+ N + E+AL H S S + ERLEFLGD IL ++ +++ F+ Sbjct: 36 FYRILGFYPHNIQIYEQALLHKSSSVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 95 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L I+ S+ + + ++ Sbjct: 96 GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHNSYMYGNAFEAFIGAIYL 155 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + + S K K++L EW+ + D Sbjct: 156 DQGYERCKQFMEQRIINRYIDLDKISRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDHD 214 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +P F V I GL G SK+ ++Q AA +K+ Sbjct: 215 SNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252 >gi|284054412|ref|ZP_06384622.1| ribonuclease III [Arthrospira platensis str. Paraca] Length = 394 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 24/237 (10%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61 S L K+I F N LL ALTHSS + + + E LEFLGD +L + L++ Sbjct: 165 LSKLLKKI--PFQNVDLLNHALTHSSYLYEHPKEVKRDNELLEFLGDSVLNFISGEYLYH 222 Query: 62 HFDSA-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + S EG+L+ ++LV + ++ A +L L +IR+ + S+ ++ E Sbjct: 223 KYKSVGNEGDLTKLRSALVENKQLAKFAEKLALQQYIRLGK-----GVALNPSLLSNTFE 277 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL---------QEWAHAKFGV 171 ++I A +LD G++ F+ + + + ++ + + Sbjct: 278 AMIGACFLDSGMKKVQEFLQPLFDSVIAEITSLSQGNSGKVAADSKNRLQEWVQKNIGPI 337 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK---REGI 225 TPEY+ G DH +FTV V + G QG SK+ A + AA + L + G+ Sbjct: 338 TPEYETIKEEGADHQKQFTVQVMVEGKVYGQGKGLSKKEASKKAAEKALDQIYKLGL 394 >gi|296215831|ref|XP_002754304.1| PREDICTED: endoribonuclease Dicer isoform 1 [Callithrix jacchus] gi|296215833|ref|XP_002754305.1| PREDICTED: endoribonuclease Dicer isoform 2 [Callithrix jacchus] gi|296215835|ref|XP_002754306.1| PREDICTED: endoribonuclease Dicer isoform 3 [Callithrix jacchus] Length = 1922 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1901 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1902 SAAARRALRSLK 1913 Score = 48.8 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 58/195 (29%), Gaps = 20/195 (10%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS + VS ++ ++ L + Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1393 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E D L + + E W K E +H Sbjct: 1394 TDKWEKDEMTKDCMLANGKLDEDYEEEEDEEESLMWRAPKEEADCEDDFLEYD-QEHIR- 1451 Query: 189 FTVVVEISGLAPAQG 203 I + G Sbjct: 1452 -----FIDNMLMGSG 1461 >gi|109084784|ref|XP_001100868.1| PREDICTED: endoribonuclease Dicer [Macaca mulatta] Length = 1920 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1664 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1723 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1724 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1783 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1784 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1843 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1844 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1899 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1900 SAAARRALRSLK 1911 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1281 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1338 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS + VS ++ ++ L + Sbjct: 1339 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1391 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E D L D + E W K E +H Sbjct: 1392 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1449 Query: 189 FTVVVEISGLAPAQG 203 I + G Sbjct: 1450 -----FIDNMLMGSG 1459 >gi|29348766|ref|NP_812269.1| ribonuclease III [Bacteroides thetaiotaomicron VPI-5482] gi|253568891|ref|ZP_04846301.1| ribonuclease III [Bacteroides sp. 1_1_6] gi|29340672|gb|AAO78463.1| ribonuclease III [Bacteroides thetaiotaomicron VPI-5482] gi|251840910|gb|EES68991.1| ribonuclease III [Bacteroides sp. 1_1_6] Length = 324 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 5/218 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +G+ N + E+AL H S + + ERLEFLGD IL ++ +++ F+ Sbjct: 36 FYRILGFYPHNIQIYEQALLHKSSAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 95 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L I+ S+ + + ++ Sbjct: 96 GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHNSYMYGNAFEAFIGAIYL 155 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + + S K K++L EW+ + D Sbjct: 156 DQGYERCKQFMEQRIINRYIDLDKISRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDHD 214 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +P F V I GL G SK+ ++Q AA +K+ Sbjct: 215 SNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252 >gi|332223646|ref|XP_003260983.1| PREDICTED: endoribonuclease Dicer isoform 1 [Nomascus leucogenys] gi|332223648|ref|XP_003260984.1| PREDICTED: endoribonuclease Dicer isoform 2 [Nomascus leucogenys] Length = 1922 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1901 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1902 SAAARRALRSLK 1913 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 54/185 (29%), Gaps = 16/185 (8%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 VS ++ ++ L + E Sbjct: 1351 VSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSNTDKWEKDEMT 1403 Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 D L D + E W K E +H I + Sbjct: 1404 KDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR------FIDNM 1456 Query: 199 APAQG 203 G Sbjct: 1457 LMGSG 1461 >gi|297695799|ref|XP_002825114.1| PREDICTED: endoribonuclease Dicer-like isoform 1 [Pongo abelii] gi|297695801|ref|XP_002825115.1| PREDICTED: endoribonuclease Dicer-like isoform 2 [Pongo abelii] gi|297695803|ref|XP_002825116.1| PREDICTED: endoribonuclease Dicer-like isoform 3 [Pongo abelii] Length = 1922 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1901 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1902 SAAARRALRSLK 1913 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS + VS ++ ++ L + Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1393 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E D L D + E W K E +H Sbjct: 1394 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1451 Query: 189 FTVVVEISGLAPAQG 203 I + G Sbjct: 1452 -----FIDNMLMGSG 1461 >gi|119602001|gb|EAW81595.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Homo sapiens] Length = 1923 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1847 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1902 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1903 SAAARRALRSLK 1914 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1284 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1341 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS + VS ++ ++ L + Sbjct: 1342 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1394 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E D L D + E W K E +H Sbjct: 1395 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1452 Query: 189 FTVVVEISGLAPAQG 203 I + G Sbjct: 1453 -----FIDNMLMGSG 1462 >gi|114654613|ref|XP_001154199.1| PREDICTED: dicer1 isoform 3 [Pan troglodytes] gi|114654615|ref|XP_001154247.1| PREDICTED: dicer1 isoform 4 [Pan troglodytes] gi|114654617|ref|XP_001154306.1| PREDICTED: dicer1 isoform 5 [Pan troglodytes] gi|114654619|ref|XP_001154369.1| PREDICTED: endoribonuclease Dicer isoform 6 [Pan troglodytes] Length = 1922 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1901 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1902 SAAARRALRSLK 1913 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS + VS ++ ++ L + Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1393 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E D L D + E W K E +H Sbjct: 1394 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1451 Query: 189 FTVVVEISGLAPAQG 203 I + G Sbjct: 1452 -----FIDNMLMGSG 1461 >gi|114654611|ref|XP_001154010.1| PREDICTED: dicer1 isoform 1 [Pan troglodytes] Length = 1930 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1901 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1902 SAAARRALRSLK 1913 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS + VS ++ ++ L + Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1393 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E D L D + E W K E +H Sbjct: 1394 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1451 Query: 189 FTVVVEISGLAPAQG 203 I + G Sbjct: 1452 -----FIDNMLMGSG 1461 >gi|56459918|ref|YP_155199.1| RNase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR] gi|81363596|sp|Q5R106|RNC_IDILO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56178928|gb|AAV81650.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR] Length = 229 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 68/208 (32%), Positives = 110/208 (52%), Gaps = 6/208 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + LEK +GY+F + LL +A+TH S S ++ ERLEFLGD ILGL+I+ L+ F Sbjct: 8 LTELEKIVGYSFEQQGLLHQAMTHRSASSTH---NERLEFLGDSILGLVIAEALYQKFPK 64 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS ++V + +++ +++ L F+ + K SI AD VE++I A Sbjct: 65 VAEGDLSRMRAAIVCGRSLAKLGKKMGLGDFLSLGQGELKSGGYRRESILADAVEAIIGA 124 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD ++ + +++ + ++D KT LQE A+ PEY V G Sbjct: 125 IYLDSDMDTIRQVILNWFEPQLTLIEPGTSQKDPKTRLQELLQARQKPLPEYDVVATQGQ 184 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRA 210 H+ +FTV + G+ P +G S+R Sbjct: 185 AHNQQFTVNCSVEGIESPFKGTGTSRRK 212 >gi|29294649|ref|NP_085124.2| endoribonuclease Dicer isoform 1 [Homo sapiens] gi|29294651|ref|NP_803187.1| endoribonuclease Dicer isoform 1 [Homo sapiens] gi|257051056|sp|Q9UPY3|DICER_HUMAN RecName: Full=Endoribonuclease Dicer; AltName: Full=Helicase with RNase motif; Short=Helicase MOI gi|20521696|dbj|BAA76772.2| KIAA0928 protein [Homo sapiens] gi|119602002|gb|EAW81596.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Homo sapiens] gi|152012889|gb|AAI50288.1| Dicer 1, ribonuclease type III [Homo sapiens] gi|307685563|dbj|BAJ20712.1| dicer 1, ribonuclease type III [synthetic construct] Length = 1922 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1901 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1902 SAAARRALRSLK 1913 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS + VS ++ ++ L + Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1393 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E D L D + E W K E +H Sbjct: 1394 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1451 Query: 189 FTVVVEISGLAPAQG 203 I + G Sbjct: 1452 -----FIDNMLMGSG 1461 >gi|21665773|emb|CAB38857.2| hypothetical helicase K12H4.8-like protein [Homo sapiens] Length = 1912 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1656 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1715 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1716 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1775 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1776 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1835 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1836 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1891 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1892 SAAARRALRSLK 1903 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1273 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1330 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS + VS ++ ++ L + Sbjct: 1331 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1383 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E D L D + E W K E +H Sbjct: 1384 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1441 Query: 189 FTVVVEISGLAPAQG 203 I + G Sbjct: 1442 -----FIDNMLMGSG 1451 >gi|5019620|dbj|BAA78691.1| helicase-MOI [Homo sapiens] Length = 1924 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1668 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1727 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1728 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1787 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1788 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1847 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1848 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1903 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1904 SAAARRALRSLK 1915 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1285 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1342 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS + VS ++ ++ L + Sbjct: 1343 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1395 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E D L D + E W K E +H Sbjct: 1396 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1453 Query: 189 FTVVVEISGLAPAQG 203 I + G Sbjct: 1454 -----FIDNMLMGSG 1463 >gi|329964465|ref|ZP_08301519.1| ribonuclease III [Bacteroides fluxus YIT 12057] gi|328524865|gb|EGF51917.1| ribonuclease III [Bacteroides fluxus YIT 12057] Length = 294 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 K +G+ N + ++AL H S S + ERLEFLGD IL ++ +++ HFD Sbjct: 23 FYKILGFFPHNIQIYQQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFD 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L ++ S+ + + ++ Sbjct: 83 GRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSTRSSSHNSYMYGNAFEAFIGAIYL 142 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D + + K + S K K++L EW+ + D Sbjct: 143 DQGYDRCKQFMEEKIFKNYIDLDKMSRKEVNF-KSKLIEWSQKNKMEVSFELIEQLLDED 201 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 ++P F V I G++ G SK+ ++Q AA LK+ Sbjct: 202 YNPMFHTEVRIEGISAGTGTGYSKKESQQNAARMTLKKIK 241 >gi|314923852|gb|EFS87683.1| ribonuclease III [Propionibacterium acnes HL001PA1] gi|314966091|gb|EFT10190.1| ribonuclease III [Propionibacterium acnes HL082PA2] gi|314981862|gb|EFT25955.1| ribonuclease III [Propionibacterium acnes HL110PA3] gi|315090788|gb|EFT62764.1| ribonuclease III [Propionibacterium acnes HL110PA4] gi|315094941|gb|EFT66917.1| ribonuclease III [Propionibacterium acnes HL060PA1] gi|327328032|gb|EGE69801.1| ribonuclease III [Propionibacterium acnes HL103PA1] Length = 265 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 38 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + ++AR+L + I++ + TSI AD E+L+ Sbjct: 97 PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 216 GPDHNRRYCARANVDGRLYAAYTGHNKKEAEQGAARRA 253 >gi|282854597|ref|ZP_06263932.1| ribonuclease III [Propionibacterium acnes J139] gi|282582179|gb|EFB87561.1| ribonuclease III [Propionibacterium acnes J139] Length = 246 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 19 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 77 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + ++AR+L + I++ + TSI AD E+L+ Sbjct: 78 PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 137 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 138 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 196 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 197 GPDHNRRYCARANVDGRLYAAYTGHNKKEAEQGAARRA 234 >gi|213419257|ref|ZP_03352323.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 213 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 5/197 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 20 MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 76 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 77 HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 136 Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + + G ++D KT LQE+ + P Y V Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196 Query: 179 FRSGPDHDPRFTVVVEI 195 G HD FT+ ++ Sbjct: 197 QVRGEAHDQEFTIHCQV 213 >gi|149371093|ref|ZP_01890688.1| putative ribonuclease III [unidentified eubacterium SCB49] gi|149355879|gb|EDM44437.1| putative ribonuclease III [unidentified eubacterium SCB49] Length = 247 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 95/219 (43%), Gaps = 6/219 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFD 64 ++K +G+ + ++ E+A TH S + + ++YERLEFLGD +L +I+ L+ Sbjct: 22 IKKLLGFKPKDITIYEEAFTHRSTNEKTREGHAQNYERLEFLGDAMLSAVIAAHLYKKVP 81 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +VS E +++ R+L+L +R + +++ + ++ +V ++ Sbjct: 82 GGNEGYLTKMRSKVVSREHLNELGRDLELIKHLRTTIPIKQFGGNVHGNVFESLVGAIYL 141 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + V K + GK ++ ++ V +G D Sbjct: 142 DRGYRYCEKFINKRVIKPYVDIKKLEGKVISYKSLFIEWCQK--HKSQFKFAVYEDTGND 199 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + + + SK+ AE++AA + Sbjct: 200 KLKHFAVKLHLDNVVVGKARATSKKKAEEMAAKRAYYKL 238 >gi|328723672|ref|XP_003247913.1| PREDICTED: ribonuclease 3-like [Acyrthosiphon pisum] Length = 1273 Score = 115 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 6/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E IG F + LL +A T S ++ S +RLEFLGD +L L+ S L+ + Sbjct: 964 KLTNFEDSIGIKFTHIRLLARAFTDRSVGFTNLTLGSNQRLEFLGDTVLQLIASDYLYKY 1023 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T S V +L + S+ ++ + + + +L Sbjct: 1024 FPEHHEGHLSLLRSSLVNNRTQSVVCDDLGMVSYALYANPKAELKTKDRADLLEAFLGAL 1083 Query: 123 IA----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + + ++ K + P YKV Sbjct: 1084 YIDKGLTFCQAFCNVCFFPRLHDFILKQDWNDPKSKLQQCCLTLRSVDGGEPDIPVYKVI 1143 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 GP + ++TV V + +Q S + AE AA L+ Sbjct: 1144 ECMGPTNGRKYTVAVYFKSVRLSQATGHSIQRAEMNAANSALE 1186 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 75/210 (35%), Gaps = 55/210 (26%) Query: 6 YSTLEKRIGYAFANRSLLEKA--------------------LT--------------H-- 29 LE I Y F N+ LL+ A LT H Sbjct: 733 LEYLEDTIEYKFKNKYLLQLALTHPSYRENFGTNPDHARNTLTNCGIRQPEYGDRRIHYM 792 Query: 30 -------------------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 S S ERLEFLGD ++ + S LFN F +EG Sbjct: 793 NTRKRGINTLINIMSRFGKKSEMESNIMHNERLEFLGDAVVEFVSSIHLFNMFPDIEEGG 852 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ ++V + + +A+ L L F+ + S + A+ E+L+ AL+LDG Sbjct: 853 LATFRAAIVQNQHLAVLAKTLKLDDFMLYAHGSDLCHDSELKHAMANCFEALMGALFLDG 912 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 GIEVA K + + + + + Sbjct: 913 GIEVADRVFGKTFYRDSPEYLDIWVNYPRH 942 >gi|257051055|sp|A0MQH0|DICER_CRIGR RecName: Full=Endoribonuclease Dicer gi|116831677|gb|ABK28790.1| DICER [Cricetulus griseus] Length = 1917 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1661 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1720 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1721 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1780 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1781 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1840 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1841 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1896 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1897 SAAARRALRSLK 1908 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1351 VSNCNLYRLGKKKG 1364 >gi|327259080|ref|XP_003214366.1| PREDICTED: endoribonuclease Dicer-like isoform 2 [Anolis carolinensis] Length = 1915 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y+F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1659 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1718 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1719 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1778 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1779 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWHVYYPMMRPLIEKF 1838 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1839 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1894 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1895 SAAARRALRSLK 1906 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1288 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1345 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1346 VSNCNLYRLGKKKG 1359 >gi|327259078|ref|XP_003214365.1| PREDICTED: endoribonuclease Dicer-like isoform 1 [Anolis carolinensis] Length = 1918 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y+F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1662 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1721 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1722 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1781 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1782 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWHVYYPMMRPLIEKF 1841 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1842 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1897 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1898 SAAARRALRSLK 1909 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1291 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1348 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1349 VSNCNLYRLGKKKG 1362 >gi|221068688|ref|ZP_03544793.1| Ribonuclease III [Comamonas testosteroni KF-1] gi|264677118|ref|YP_003277024.1| ribonuclease III [Comamonas testosteroni CNB-2] gi|299530659|ref|ZP_07044074.1| ribonuclease III [Comamonas testosteroni S44] gi|220713711|gb|EED69079.1| Ribonuclease III [Comamonas testosteroni KF-1] gi|262207630|gb|ACY31728.1| ribonuclease III [Comamonas testosteroni CNB-2] gi|298721175|gb|EFI62117.1| ribonuclease III [Comamonas testosteroni S44] Length = 227 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 76/211 (36%), Positives = 104/211 (49%), Gaps = 6/211 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L++R+ + FAN +LL++A+TH S S ++ ERLEFLGD +L L IS+LL+ S Sbjct: 5 LVALQQRLQHQFANPALLQRAITHRSFS---ADNNERLEFLGDSVLSLAISSLLYAKLAS 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS +LV T ++A +L L +R+ K SI AD VE+LI A Sbjct: 62 MPEGDLSRVRANLVKEGTLHKIALKLQLPDLLRLGEGEAKSGGKQRPSILADAVEALIGA 121 Query: 126 LYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G V ++ +D KT LQE K P+Y V SG Sbjct: 122 VYLDAGFAAGEKVVHHLFEGVDINPHMRAADKDPKTALQELLQGKRMKLPQYHVVEISGA 181 Query: 184 DHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213 H F V I+ AQG S+R EQ Sbjct: 182 AHKQTFKVECTIAEWNISAQGSGASRRMGEQ 212 >gi|332020119|gb|EGI60563.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior] Length = 1979 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 56/253 (22%), Positives = 87/253 (34%), Gaps = 29/253 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLL 59 M Y LEK IGY F + S L +A TH+S + + Y+RLEFLGD +L LI+ L Sbjct: 1716 MMLDGYEELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHL 1775 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + G L+ ++LV+ + +A + R S V + IQ + Sbjct: 1776 YEDSRQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENG 1835 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWK------------------------QRALKSGKFRR 155 S+ YL G E + K + Sbjct: 1836 HSISEEYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSE 1895 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAA 211 + + T + G R V V++ G +G+ + R A Sbjct: 1896 IEQFSTNVPKSPIRELLELEPETAKFGRPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIA 1955 Query: 212 EQVAAAEVLKREG 224 + AA LK+ Sbjct: 1956 KCTAAKCALKKLK 1968 Score = 43.4 bits (100), Expect = 0.021, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 2/107 (1%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G++ + SL+ +ALT S+ + + ERLE +GD L I+T L+ +D+ EG+LS Sbjct: 1437 GHSGPSPSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSH 1494 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + VS ++ R+ L + + D +E Sbjct: 1495 LRSKQVSNLNLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELE 1541 >gi|327382635|gb|AEA54111.1| ribonuclease III [Lactobacillus casei LC2W] gi|327385829|gb|AEA57303.1| ribonuclease III [Lactobacillus casei BD-II] Length = 231 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 91/205 (44%), Gaps = 5/205 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 S L +R G F + SLL++A THSS + ++E ERLEFLGD +L L +S L+ Sbjct: 7 VSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYR 66 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+L+ + V S ++E +I++ K ++ D+ E+ Sbjct: 67 KFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARKRLTLLEDLFEA 126 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ALYLD G + F + + +D KT LQE V Y + Sbjct: 127 FNGALYLDQGRDANIRFAQQIIFPKIDAGEFSDDQDHKTALQEVLQQNGDVAIVYHLLDE 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMD 205 GP H+ +F V VE+ G G Sbjct: 187 QGPAHERQFHVDVEVDGRVLGTGFG 211 >gi|255264048|ref|ZP_05343390.1| ribonuclease III [Thalassiobium sp. R2A62] gi|255106383|gb|EET49057.1| ribonuclease III [Thalassiobium sp. R2A62] Length = 226 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 76/205 (37%), Positives = 112/205 (54%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 E R+G+ F +LL +A+TH+S+S ++ +RLEFLGDR+LGL+++ L Sbjct: 6 DLKAFEGRLGHRFETPALLVQAVTHASMSSPNRDDNQRLEFLGDRVLGLVMAEALLAADP 65 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG L+ R+N+LV E C+ VARE+D+ + +++ K ++ D +E++IA Sbjct: 66 MAPEGILAPRYNALVRKEACADVAREVDVGAVLKLGRSEMKSGGRRKLALLGDAMEAVIA 125 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLD G E A V + W R RDAKT LQEWA + P Y R+GPD Sbjct: 126 AVYLDAGFEAAREMVLRLWGTRIHTVKADARDAKTALQEWAQGRGEGPPNYTEVSRTGPD 185 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 H P F + V + + SKR Sbjct: 186 HAPIFEIEVRLEAGQSYRAKAGSKR 210 >gi|291570878|dbj|BAI93150.1| ribonuclease III [Arthrospira platensis NIES-39] Length = 395 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 97/233 (41%), Gaps = 16/233 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61 S L K+I F N LL ALTHSS + + + E LEFLGD +L + L++ Sbjct: 166 LSKLLKKI--PFQNVDLLNHALTHSSYLYEHPKEVKRDNELLEFLGDSVLNFISGEYLYH 223 Query: 62 HFDSA-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + S EG+L+ ++LV + ++ A +L L +IR+ + S +++ ++ Sbjct: 224 KYKSVGNEGDLTKLRSALVENKQLAKFAEKLALQQYIRLGKGV-ALNPSLLSNTFEAMIG 282 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV-----TPEY 175 + + E D + S + + TPEY Sbjct: 283 ACFLDSGMKKVQEFLQPLFDSVIAEITSLSQGNSGKVAADSKNRLQEWVQKNIGPITPEY 342 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK---REGI 225 + G DH +FTV V + G QG SK+ A + AA + L + G+ Sbjct: 343 ETIKEEGADHQKQFTVQVMVEGKVYGQGKGLSKKEASKKAAEKALDQIYKLGL 395 >gi|325915827|ref|ZP_08178126.1| RNAse III [Xanthomonas vesicatoria ATCC 35937] gi|325537948|gb|EGD09645.1| RNAse III [Xanthomonas vesicatoria ATCC 35937] Length = 226 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 80/218 (36%), Positives = 112/218 (51%), Gaps = 6/218 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ LL +AL H S ERLEFLGD I+ LLI+ L+ + A EG L+ Sbjct: 12 IGHAFADPGLLARALRHRSAG---TPHNERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEPSLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 V + +A A+G S+R AEQ AAA V+ + + T Sbjct: 189 VACILEQPIARAEGQGTSRRLAEQQAAATVIAQLDVNT 226 >gi|285019301|ref|YP_003377012.1| ribonuclease III protein [Xanthomonas albilineans GPE PC73] gi|283474519|emb|CBA17020.1| probable ribonuclease III protein [Xanthomonas albilineans] Length = 227 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 78/216 (36%), Positives = 114/216 (52%), Gaps = 6/216 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 RIG+ F LL +ALTH S ERLEFLGD I+ LLI+ L+ + A EG Sbjct: 11 DRIGHRFTEPQLLAQALTHRSAG---APHNERLEFLGDSIVNLLIAEALYQRWPKADEGA 67 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ LV + + + R+L+L + + K SI AD VE+++AA+YLD Sbjct: 68 LTRARAELVREASLAAIGRQLELGDRLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDA 127 Query: 131 GIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G E + +++ AL GK +DAKT LQEW A+ P Y++ +G +H R Sbjct: 128 GFETCRATILPWFESGLAALPVGKPEKDAKTRLQEWLQARQRALPAYELISETGDEHAKR 187 Query: 189 FTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V ++ + A+G S+R AEQ AAA V+++ Sbjct: 188 FRVRCALTEPVLVAEGEGTSRRLAEQQAAAAVIEQL 223 >gi|212692274|ref|ZP_03300402.1| hypothetical protein BACDOR_01770 [Bacteroides dorei DSM 17855] gi|237726085|ref|ZP_04556566.1| ribonuclease 3 [Bacteroides sp. D4] gi|212665151|gb|EEB25723.1| hypothetical protein BACDOR_01770 [Bacteroides dorei DSM 17855] gi|229435893|gb|EEO45970.1| ribonuclease 3 [Bacteroides dorei 5_1_36/D4] Length = 308 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 5/227 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57 Y K +G+ + S+ E+AL H S+S + ERLEFLGD IL +++ Sbjct: 16 DRESYFRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVAD 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +++ F+ +EG L+ + +V ET +++A E+ L I+ ++ + Sbjct: 76 IVYKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTARQSSHNSYMCGNAFEA 135 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +V ++ + K + + K++L EW+ + Sbjct: 136 LVGAIYLDRGYR-ACKYFMEHRIIGSYINLEKISRKEVNFKSKLIEWSQKNRFEVTFELI 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T ++P F V + G++ +G SK+ ++Q+AA L + Sbjct: 195 TQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGKIK 241 >gi|265752863|ref|ZP_06088432.1| ribonuclease 3 [Bacteroides sp. 3_1_33FAA] gi|263236049|gb|EEZ21544.1| ribonuclease 3 [Bacteroides sp. 3_1_33FAA] Length = 308 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 5/227 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57 Y K +G+ + S+ E+AL H S+S + ERLEFLGD IL +++ Sbjct: 16 DRESYFRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVAD 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +++ F+ +EG L+ + +V ET +++A E+ L I+ ++ + Sbjct: 76 IVYKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTARQSSHNSYMCGNAFEA 135 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +V ++ + K + + K++L EW+ + Sbjct: 136 LVGAIYLDRGYR-ACKYFMEHRIIGSYINLEKISRKEVNFKSKLIEWSQKNRFEVTFELI 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T ++P F V + G++ +G SK+ ++Q+AA L + Sbjct: 195 TQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGKIK 241 >gi|168177333|pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 15 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPR 74 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114 G L+ ++LV+ + +A + D + + S V Sbjct: 75 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 134 Query: 115 ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 D+ ESL A+Y+D G+ + + Y + L Sbjct: 135 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 194 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 195 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 250 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 251 SAAARRALRSLK 262 >gi|281339672|gb|EFB15256.1| hypothetical protein PANDA_009266 [Ailuropoda melanoleuca] Length = 1917 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 90/245 (36%), Gaps = 30/245 (12%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1668 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1727 Query: 65 SAKEGELSVRFNSLVSA---------ETCSQVARELDLASFIRVSSDLRKDVC------- 108 G L+ ++LV+ + S + Sbjct: 1728 QHSPGVLTDLRSALVNNTIFASLAYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRS 1787 Query: 109 ---------SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT 159 + D+ ESL A+Y+D G+ + + Y R L ++ Sbjct: 1788 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRS 1847 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 ++E + +D + V VE+ G +G+ S R A+ AA Sbjct: 1848 PVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRA 1903 Query: 220 LKREG 224 L+ Sbjct: 1904 LRSLK 1908 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 54/185 (29%), Gaps = 16/185 (8%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1295 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1352 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 VS ++ ++ L + E Sbjct: 1353 VSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSNTDKWEKDEMT 1405 Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 D L D + E W K E +H I + Sbjct: 1406 KDCMLANGKLDEDFEEDDEEEEELTWRAPKEDADYEDDFLEYD-QEHIK------FIDNM 1458 Query: 199 APAQG 203 G Sbjct: 1459 LMGSG 1463 >gi|163733862|ref|ZP_02141304.1| ribonuclease III [Roseobacter litoralis Och 149] gi|161392973|gb|EDQ17300.1| ribonuclease III [Roseobacter litoralis Och 149] Length = 228 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 81/210 (38%), Positives = 122/210 (58%), Gaps = 1/210 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + +KR+G+ F SLL +A+TH+S+S + + +R+EFLGDR+LGL+++ L Sbjct: 1 MKLSAELKAFQKRLGHQFNQPSLLAQAVTHASMSTANRGDNQRMEFLGDRVLGLVMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + A EG+L+ RFN+LV ETC+ VARE+DL + +R+ ++ D + Sbjct: 61 LGLDNDATEGQLAPRFNALVRKETCADVAREIDLGAVLRLGRSEMLSGGRRKQALLGDAI 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+Y D G + A + + W R + + RDAKT LQEWA A+ P Y+ Sbjct: 121 EAVIAAVYQDAGFDAARALILRLWGDRVHEVEEDARDAKTALQEWAQARGLQPPHYEEVH 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 R GPDH P FT+ V++S Q SKR Sbjct: 181 RKGPDHAPIFTISVQLSTGETDQATAGSKR 210 >gi|149636857|ref|XP_001510982.1| PREDICTED: similar to Dicer protein [Ornithorhynchus anatinus] Length = 1921 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E++I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1665 FENFERKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1784 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1900 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1901 SAAARRALRSLK 1912 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1352 VSNCNLYRLGKKKG 1365 >gi|116495089|ref|YP_806823.1| ribonuclease III [Lactobacillus casei ATCC 334] gi|191638593|ref|YP_001987759.1| ribonuclease III [Lactobacillus casei BL23] gi|227534896|ref|ZP_03964945.1| ribonuclease III [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|116105239|gb|ABJ70381.1| RNAse III [Lactobacillus casei ATCC 334] gi|190712895|emb|CAQ66901.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus casei BL23] gi|227187652|gb|EEI67719.1| ribonuclease III [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 231 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 91/205 (44%), Gaps = 5/205 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 S L +R G F + SLL++A THSS + ++E ERLEFLGD +L L +S L+ Sbjct: 7 VSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYR 66 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+L+ + V S ++E +I++ K ++ D+ E+ Sbjct: 67 KFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARKRLTLLEDLFEA 126 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ALYLD G + F + + +D KT LQE V Y + Sbjct: 127 FNGALYLDQGRDANIRFAQQIIFPKIDAGEFSADQDHKTALQEVLQQNGDVAIVYHLLDE 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMD 205 GP H+ +F V VE+ G G Sbjct: 187 QGPAHERQFHVDVEVDGRVLGTGFG 211 >gi|54310187|ref|YP_131207.1| ribonuclease III [Photobacterium profundum SS9] gi|81615006|sp|Q6LMS2|RNC_PHOPR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|46914628|emb|CAG21405.1| putative ribonuclease III [Photobacterium profundum SS9] Length = 224 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 105/207 (50%), Gaps = 6/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L++R+GY F + L+ +LTH S + ERLEFLGD IL +I+ L++ F Sbjct: 6 NRLQRRLGYQFNSSELMTLSLTHRSA---NGKHNERLEFLGDSILSFVIADDLYHRFPHV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV +T +++ RE +L ++ + K SI AD VE++I A+ Sbjct: 63 DEGDMSRMRATLVRGKTLAELGREFELGDYLLLGPGELKSGGFRRDSILADCVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD E + +++ R ++D KT LQE + P Y VT G Sbjct: 123 YLDSDTEQVRKVILSWYQSRLETIQPGINQKDPKTRLQECLQGRRLALPAYTVTKVHGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210 H+ FTV E++GL P G S+R Sbjct: 183 HNQEFTVQCEVTGLDKPVIGKGSSRRK 209 >gi|229552452|ref|ZP_04441177.1| ribonuclease III [Lactobacillus rhamnosus LMS2-1] gi|229314189|gb|EEN80162.1| ribonuclease III [Lactobacillus rhamnosus LMS2-1] Length = 231 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 91/205 (44%), Gaps = 5/205 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 S L +R G F + SLL++A THSS + ++E ERLEFLGD +L L +S L+ Sbjct: 7 VSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYR 66 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+L+ + V S ++E +I++ K ++ D+ E+ Sbjct: 67 KFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLEDLFEA 126 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ALYLD G E F + + +D KT LQE V Y + Sbjct: 127 FNGALYLDQGREANIKFTKQIIFPKIDAGEFSADQDHKTALQETLQQNGDVAIVYHLLDE 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMD 205 GP H+ +F V VE+ G G Sbjct: 187 KGPAHERQFHVDVEVEGRVLGTGFG 211 >gi|241061228|ref|XP_002408100.1| dicer-1, putative [Ixodes scapularis] gi|215492369|gb|EEC02010.1| dicer-1, putative [Ixodes scapularis] Length = 2050 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 94/251 (37%), Gaps = 36/251 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E RIGY F +R+ L +A TH+S + + Y+RLEFLGD +L LI+ L++ Sbjct: 1794 YDAFEARIGYRFRDRAYLLQAFTHASYHYNRLTDCYQRLEFLGDAVLDYLITRHLYDDPQ 1853 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-------------SSDLRKDVCSFM 111 G L+ ++LV+ + +A + D + + + D + Sbjct: 1854 RHSPGTLTDLRSALVNNTFFASLAVKYDFHRYFKNVSPGLFAVIQRFVETKCHSDGFRYH 1913 Query: 112 TSIQ------------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 D+ ES+ A++LD + + + Y + Sbjct: 1914 EKYYLEEEECEEAEEVEVPKALGDIFESVAGAIFLDSNMSLDTVWRVYYAMMKPEIEYFS 1973 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 K+ ++E + + + + + VE+ G G+ +KR A+ Sbjct: 1974 THVPKSPIRELLELEPQTAKFERAEMTL----NGKVRIRVEVFGKGRFVGVGRNKRIAKC 2029 Query: 214 VAAAEVLKREG 224 AA L+ Sbjct: 2030 TAAKRALRALK 2040 Score = 40.3 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S+L +ALT S+ + + ERLE +GD L ++ L+ S EG+LS + + Sbjct: 1550 PSILLQALTMSNANDGI--NLERLETVGDSFLKYAVTAHLYCTHPSVHEGKLSHLRSRQI 1607 Query: 80 SAETCSQ 86 S + Sbjct: 1608 SNLNLYR 1614 >gi|90101612|sp|Q8A2E8|RNC_BACTN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 311 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 5/218 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +G+ N + E+AL H S + + ERLEFLGD IL ++ +++ F+ Sbjct: 23 FYRILGFYPHNIQIYEQALLHKSSAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L I+ S+ + + ++ Sbjct: 83 GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHNSYMYGNAFEAFIGAIYL 142 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + + S K K++L EW+ + D Sbjct: 143 DQGYERCKQFMEQRIINRYIDLDKISRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDHD 201 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +P F V I GL G SK+ ++Q AA +K+ Sbjct: 202 SNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 239 >gi|92117774|ref|YP_577503.1| ribonuclease III [Nitrobacter hamburgensis X14] gi|91800668|gb|ABE63043.1| RNAse III [Nitrobacter hamburgensis X14] Length = 266 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 88/202 (43%), Positives = 121/202 (59%), Gaps = 3/202 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +E+R+G+ FA+ SLL A TH S S +SY+RLEFLGD +LGL++S +L+ F Sbjct: 44 AAIEQRLGHKFADMSLLTTAFTHVSALKSSRGRSDSYQRLEFLGDHVLGLVVSDMLYRAF 103 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A EGELS R LV ETC VA+ LDL I++ + S+ D+ E++I Sbjct: 104 PKADEGELSKRLAELVRKETCIDVAKSLDLQDGIKLGAVGAGAGARLRRSVLGDICEAVI 163 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG A FV++ W +R K + RD KT LQEWA + TP Y+ R+GP Sbjct: 164 GAVYLDGGYAAAAAFVERNWLERMRKPVRPLRDPKTVLQEWAQGQGLPTPVYREVERTGP 223 Query: 184 DHDPRFTVVVEISGLAPAQGMD 205 HDPRF V VE+ GL ++G+ Sbjct: 224 HHDPRFRVAVELPGLEASEGIG 245 >gi|188577282|ref|YP_001914211.1| ribonuclease III [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521734|gb|ACD59679.1| ribonuclease III [Xanthomonas oryzae pv. oryzae PXO99A] Length = 226 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 76/214 (35%), Positives = 105/214 (49%), Gaps = 6/214 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ LL +AL H S ERLEFLGD I+ LL++ L+ + A EG L+ Sbjct: 12 IGHAFADPDLLAQALRHRSAG---TPHNERLEFLGDGIVNLLVAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGEWKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + +A A+G S+R AEQ AA V+ + Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222 >gi|145296037|ref|YP_001138858.1| ribonuclease III [Corynebacterium glutamicum R] gi|140845957|dbj|BAF54956.1| hypothetical protein [Corynebacterium glutamicum R] Length = 247 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 4/225 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 A+ + L +G R LL ALTH S ++ + ERLEFLGD +LGL ++ L Sbjct: 19 DAVDHQPLLDHLGVDIQ-RDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLSVANKL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S+ E ++S S+VS + +ARE+DL + I + SI AD Sbjct: 78 YEQYPSSPESDVSKMRASIVSRYGLADIAREIDLGNHILLGKGELLTEGRSKDSILADTT 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+L+ A++ G E A + + + + + + P + + Sbjct: 138 EALLGAIFRQHGFETARDVILRLFAYKIDNASARGIHQDWKTTLQEELAQRKRPMAEYSA 197 Query: 180 RS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 S GPDHD FT +V + G +G +K+ AEQ AA + ++ Sbjct: 198 TSVGPDHDLVFTAIVTLEGEEMGRGEGPNKKLAEQEAARQAFRKL 242 >gi|172355315|ref|NP_001116485.1| endoribonuclease Dicer-1 [Apis mellifera] gi|170181362|gb|ACB11577.1| dicer-1 CG4792-PA-like protein [Apis mellifera] Length = 1946 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 55/248 (22%), Positives = 86/248 (34%), Gaps = 29/248 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y LEK IGY F + S L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1695 YEELEKNIGYKFHDISYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDTR 1754 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A + R S V + IQ + S+ Sbjct: 1755 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSIVINRFVRIQEENGHSIGE 1814 Query: 125 ALYLDGGIEVAGTFVDKYWK------------------------QRALKSGKFRRDAKTE 160 YL G E + K + + Sbjct: 1815 EYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLGSGMSLDAVWSVYYAIMKNEIEQFS 1874 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + T + G R V V++ G +G+ + R A+ AA Sbjct: 1875 TNVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAKCTAA 1934 Query: 217 AEVLKREG 224 LK+ Sbjct: 1935 KCALKKLK 1942 Score = 43.0 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 SL+ +ALT S+ + + ERLE +GD L I+T L+ +D+ EG+LS + V Sbjct: 1417 PSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQV 1474 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 S ++ R+ L + + D +E Sbjct: 1475 SNLNLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELE 1515 >gi|258539823|ref|YP_003174322.1| ribonuclease III [Lactobacillus rhamnosus Lc 705] gi|257151499|emb|CAR90471.1| Ribonuclease III [Lactobacillus rhamnosus Lc 705] Length = 231 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 91/205 (44%), Gaps = 5/205 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 S L +R G F + SLL++A THSS + ++E ERLEFLGD +L L +S L+ Sbjct: 7 VSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYR 66 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+L+ + V S ++E +I++ K ++ D+ E+ Sbjct: 67 KFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLEDLFEA 126 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ALYLD G E F + + +D KT LQE V Y + Sbjct: 127 FNGALYLDQGREANIKFAKQIIFPKIDAGEFSADQDHKTALQETLQQNGDVAIVYHLLDE 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMD 205 GP H+ +F V VE+ G G Sbjct: 187 KGPAHERQFHVDVEVEGRVLGTGFG 211 >gi|314055212|ref|YP_004063550.1| ribonuclease III [Ostreococcus tauri virus 2] gi|313575103|emb|CBI70116.1| ribonuclease III [Ostreococcus tauri virus 2] Length = 230 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 4/226 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTL 58 +E+ +G N S ++A TH S Y ES+E LEF+GD +LG +I+ Sbjct: 1 MNFNQQDIEQLVGTKIKNLSFYQRAFTHKSALKEYEQFNESFETLEFMGDSVLGFIITKF 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF+ ++ +EG L+ LV +ET + +A +L L + + + +++ + I DV Sbjct: 61 LFDRYEERQEGFLTKARTKLVRSETLADIALKLGLNNMVLMDEKGQRNQWNNNPKILEDV 120 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+L+ A+Y+D G+ A FV + + + + + Sbjct: 121 FEALVGAIYMDLGLLHAKEFVLRIYNDPRYINLNAIMIDDNFKDHLMRYCQIMNFQLPEY 180 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G H+ F + I+G +G SK+ AEQ+AA ++ Sbjct: 181 RVVG-HHEGIFYIDAYINGQFGGRGQAKSKKQAEQLAARAFFEQLK 225 >gi|24637290|gb|AAN63637.1|AF440766_1 ribonuclease III [Mus musculus] Length = 541 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 10/229 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 273 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 332 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V AD+ ES Sbjct: 333 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLWESF 391 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 392 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 451 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 K GP H + V V G G S + AE AA + L++ Sbjct: 452 KTLQTVGPSHARTYPVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 500 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 130 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAMVQNQHLAMLAKKLELDRFM 189 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 190 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 249 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 250 LHPLQLQEPNTDRQLIETSPV 270 Score = 42.2 bits (97), Expect = 0.048, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 46 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 76 >gi|239631967|ref|ZP_04674998.1| ribonuclease 3 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066653|ref|YP_003788676.1| dsRNA-specific ribonuclease [Lactobacillus casei str. Zhang] gi|239526432|gb|EEQ65433.1| ribonuclease 3 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439060|gb|ADK18826.1| dsRNA-specific ribonuclease [Lactobacillus casei str. Zhang] Length = 231 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 92/205 (44%), Gaps = 5/205 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 S L +R G F + SLL++A THSS + ++E ERLEFLGD +L L +S L+ Sbjct: 7 VSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYR 66 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+L+ + V S ++E +I++ K ++ D+ E+ Sbjct: 67 KFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARKRLTLLEDLFEA 126 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ALYLD G + F ++ + +D KT LQE V Y + Sbjct: 127 FNGALYLDQGRDANIRFAEQIIFPKIDAGEFSADQDHKTALQEVLQQNGDVAIVYHLLDE 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMD 205 GP H+ +F V VE+ G G Sbjct: 187 QGPAHERQFHVDVEVDGRVLGTGFG 211 >gi|241888745|ref|ZP_04776051.1| ribonuclease III [Gemella haemolysans ATCC 10379] gi|241864421|gb|EER68797.1| ribonuclease III [Gemella haemolysans ATCC 10379] Length = 237 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 103/232 (44%), Gaps = 9/232 (3%) Query: 1 MSALRYSTLEKRIG--YAFANR--SLLEKALTHSSISHSYQ----ESYERLEFLGDRILG 52 M L + Y F + + + +HSS ++ + +YERLEFLGD ++ Sbjct: 1 MERTHIERLLNNLNEEYGFNLKFSENFKNSFSHSSYTNEKRIAKHLNYERLEFLGDAVVE 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L S LF F EGEL+ S+V +T + A +L L I + K Sbjct: 61 LTTSEFLFKKFSELPEGELTKLRASIVCEKTLVKYALQLSLDKCIYLGKGEEKMGGRSRA 120 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGV 171 ++ AD+ ES A+YL+ +EV TF++ + + D KT LQE+ Sbjct: 121 ALLADIFESFTGAMYLESNLEVVKTFLNNTLFTEVQDLEYHSFVDYKTILQEYISKIKLG 180 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 EY V SGP H FT V I G +K+ +EQ++A + L++ Sbjct: 181 EIEYVVLDSSGPSHSKTFTSAVLIGRKQYGSGTATTKKESEQLSAKQALEKL 232 >gi|324501501|gb|ADY40667.1| Ribonuclease 3 DROSHA [Ascaris suum] Length = 1304 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 87/226 (38%), Gaps = 11/226 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + EK IG F + +L KA T + ++ +RLEFLGD +L L+ + L+ HF Sbjct: 999 LTEFEKSIGVTFKHIRVLAKAFTRRNVGFNNLTLGHNQRLEFLGDTVLQLITTDYLYKHF 1058 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC---SFMTSIQADVVE 120 EG LS+ LVS +T S + ++ + ++ + ++K+ Sbjct: 1059 PMHHEGHLSILRTCLVSNKTQSVICDDVGMTKYLVMPKAMQKNGAPVLRVKDKADLVESF 1118 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG------VTPE 174 + G V + + + + D K++LQ+ PE Sbjct: 1119 LGALYVDRGLGYCKVFCRVCFFPRLKFFIVSQRWNDPKSQLQQCCLTLRQVDGGEPDIPE 1178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y+ GP + + V V A G + + A+ AA L Sbjct: 1179 YRTIAVEGPTNTRVYKVAVYFRKKRLAVGSGHTMQIAQMHAAENAL 1224 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 53/115 (46%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 + S ERLEFLGD ++ + + LF F EG L+ +++V + + +A+ Sbjct: 846 KKVEQSPLNHNERLEFLGDAVIEFITTIHLFFMFTELDEGGLATYRSTMVQNKNLAVLAK 905 Query: 90 ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 ++ L F+ + S + A+ E+++AA+YLD GI+ Sbjct: 906 KIGLDEFMLYAHGPDLCHESDLRHAMANAFEAMMAAIYLDAGIDECDRIFGNAMF 960 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 17/30 (56%), Positives = 20/30 (66%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQES 39 E+RI Y F NRSLLE ALTH S +Y + Sbjct: 768 EERIHYIFKNRSLLELALTHPSYRTNYGTN 797 >gi|319900438|ref|YP_004160166.1| RNAse III [Bacteroides helcogenes P 36-108] gi|319415469|gb|ADV42580.1| RNAse III [Bacteroides helcogenes P 36-108] Length = 290 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +G+ N + ++AL H SIS + ERLEFLGD IL ++ +++ HF+ Sbjct: 23 FYEILGFFPRNIQIYQQALLHKSISIRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFE 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L ++ SS + V ++ Sbjct: 83 GRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSSRSSSHNSYMYGNAFEAFVGAIYL 142 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D + K + + K++L EW+ + D Sbjct: 143 DQGYD-RCKWFMEEKIFKHYIDLDKMSRKEVNFKSKLIEWSQKNKMEVSFELIKQLLDKD 201 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 ++P F + I G++ G SK+ ++Q AA L++ Sbjct: 202 YNPMFHTEIRIEGVSAGTGTGYSKKESQQNAAQIALRKIK 241 >gi|329954117|ref|ZP_08295212.1| ribonuclease III [Bacteroides clarus YIT 12056] gi|328528094|gb|EGF55074.1| ribonuclease III [Bacteroides clarus YIT 12056] Length = 327 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +G+ + ++AL H S S + ERLEFLGD IL ++ +++ HF+ Sbjct: 35 FYRILGFFPRDIRFYQQALLHKSTSVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFE 94 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L ++ S+ + + ++ Sbjct: 95 GRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSTRSSSHNSYMYGNAFEAFIGAIYL 154 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + K + S K K++L EW+ + D Sbjct: 155 DQGYERCKQFMEKKILKNYIDLDKMSRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDRD 213 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 ++P F V I L+ G SK+ ++Q AA LK+ Sbjct: 214 YNPMFHTEVRIESLSAGTGTGYSKKESQQNAAQMALKKIK 253 >gi|125584735|gb|EAZ25399.1| hypothetical protein OsJ_09217 [Oryza sativa Japonica Group] Length = 1883 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 86/238 (36%), Gaps = 18/238 (7%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ + TL+ +G F N+ LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1533 MRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1592 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD--- 117 + G L+ + V+ E ++VA + L +R S + + Sbjct: 1593 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELL 1652 Query: 118 ----------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 ++ + I A Y K + + Sbjct: 1653 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMH 1712 Query: 168 KFGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E G ++ TV V + G+ + K+ A+++AA L Sbjct: 1713 PVRELQERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNAL 1770 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S + YER E LGD L ++S LF + Sbjct: 1323 QLKDIIDYPVPATKIL-EALTAASCQETL--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1379 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1380 EGQLTRMRQQMVSNMVLYQYALNKTLQSYIQ 1410 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 8/78 (10%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMDC 206 + + L + + P+Y+ GP H RF V ++ + M Sbjct: 1795 QMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPM-P 1853 Query: 207 SKRAAEQVAAAEVLKREG 224 S + A+ AA +L+ Sbjct: 1854 SVKKAKDSAAVLLLELLN 1871 >gi|125542181|gb|EAY88320.1| hypothetical protein OsI_09779 [Oryza sativa Indica Group] Length = 1883 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 86/238 (36%), Gaps = 18/238 (7%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ + TL+ +G F N+ LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1533 MRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1592 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD--- 117 + G L+ + V+ E ++VA + L +R S + + Sbjct: 1593 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELL 1652 Query: 118 ----------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 ++ + I A Y K + + Sbjct: 1653 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMH 1712 Query: 168 KFGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E G ++ TV V + G+ + K+ A+++AA L Sbjct: 1713 PVRELQERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNAL 1770 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 1323 QLKDIIDYPVPATKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1379 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1380 EGQLTRMRQQMVSNMVLYQYALNKTLQSYIQ 1410 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 8/78 (10%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMDC 206 + + L + + P+Y+ GP H RF V ++ + M Sbjct: 1795 QMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPM-P 1853 Query: 207 SKRAAEQVAAAEVLKREG 224 S + A+ AA +L+ Sbjct: 1854 SVKKAKDSAAVLLLELLN 1871 >gi|75330224|sp|Q8LMR2|DCL1_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=OsDCL1 gi|21426125|gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group] gi|108705906|gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza sativa Japonica Group] Length = 1883 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 86/238 (36%), Gaps = 18/238 (7%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ + TL+ +G F N+ LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1533 MRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1592 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD--- 117 + G L+ + V+ E ++VA + L +R S + + Sbjct: 1593 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELL 1652 Query: 118 ----------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 ++ + I A Y K + + Sbjct: 1653 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMH 1712 Query: 168 KFGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E G ++ TV V + G+ + K+ A+++AA L Sbjct: 1713 PVRELQERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNAL 1770 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S + YER E LGD L ++S LF + Sbjct: 1323 QLKDIIDYPVPATKIL-EALTAASCQETL--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1379 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1380 EGQLTRMRQQMVSNMVLYQYALNKTLQSYIQ 1410 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 8/78 (10%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMDC 206 + + L + + P+Y+ GP H RF V ++ + M Sbjct: 1795 QMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPM-P 1853 Query: 207 SKRAAEQVAAAEVLKREG 224 S + A+ AA +L+ Sbjct: 1854 SVKKAKDSAAVLLLELLN 1871 >gi|193786026|dbj|BAG51002.1| unnamed protein product [Homo sapiens] Length = 554 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 298 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 357 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 358 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 417 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 418 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 477 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 478 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 533 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 534 SAAARRALRSLK 545 >gi|89075088|ref|ZP_01161529.1| ribonuclease III [Photobacterium sp. SKA34] gi|89049175|gb|EAR54740.1| ribonuclease III [Photobacterium sp. SKA34] Length = 239 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 105/207 (50%), Gaps = 6/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L++++GY F N L+ ALTH S ERLEFLGD IL +++ L++ F S Sbjct: 21 NRLQRKLGYQFNNCELMTLALTHRSA---NGTHNERLEFLGDSILSFVVADDLYHRFPSV 77 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV +T +++ RE +L + + K SI AD VE++I A+ Sbjct: 78 DEGDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFRRDSILADCVEAIIGAI 137 Query: 127 YLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E V + ++ G ++D KT LQE + P Y VT G Sbjct: 138 YLDSDVEQVRRIVLAWYKTRLDTIEPGINQKDPKTRLQECLQGRRLPLPAYTVTKVQGEA 197 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210 H+ FTV +++GL P G S+R Sbjct: 198 HNQEFTVQCDVTGLDKPVIGKGGSRRK 224 >gi|325920677|ref|ZP_08182587.1| RNAse III [Xanthomonas gardneri ATCC 19865] gi|325548867|gb|EGD19811.1| RNAse III [Xanthomonas gardneri ATCC 19865] Length = 227 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 109/214 (50%), Gaps = 6/214 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ LL +AL H S ERLEFLGD I+ LLI+ L+ + A EG L+ Sbjct: 13 IGHAFADPGLLAQALRHRSAG---TPHNERLEFLGDGIVNLLIAEALYQRWPKADEGALT 69 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 70 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 129 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 130 ERCREVVLPWFEPSLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 189 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + +A A+G S+R AEQ AA V+ + Sbjct: 190 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 223 >gi|329114470|ref|ZP_08243232.1| Ribonuclease 3 [Acetobacter pomorum DM001] gi|326696546|gb|EGE48225.1| Ribonuclease 3 [Acetobacter pomorum DM001] Length = 253 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 77/218 (35%), Positives = 110/218 (50%), Gaps = 12/218 (5%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----------SYERLEFLGDRIL 51 R LE R+GY F N LL++ALTH S +H S ERLEF+GDR+L Sbjct: 21 RFRLEELEVRLGYRFVNPDLLQEALTHRSAAHQKAGGRKRQKAKGAGSNERLEFIGDRVL 80 Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 GLL++ L F + +EG L R LVS + +++A LDL + V++ + Sbjct: 81 GLLMAEWLLERFPNEQEGALGSRLAHLVSRVSLAEIADRLDLPQSLTVAAHEARAGVQTA 140 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 ++ AD +E+++ A++LDGG+E A V +W+ +D KT LQEW + Sbjct: 141 ANVVADALEAVLGAVFLDGGLEPARQMVRDWWRSALDAQAHPPKDPKTALQEWVLGRGQS 200 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 P Y+ GP H P F V V GL +G SKR Sbjct: 201 LPVYETIGADGPSHAPLFVVRVTAGGL-FGEGRAGSKR 237 >gi|307190121|gb|EFN74275.1| Endoribonuclease Dcr-1 [Camponotus floridanus] Length = 1976 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 56/253 (22%), Positives = 87/253 (34%), Gaps = 29/253 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLL 59 M Y LEK IGY F + S L +A TH+S + + Y+RLEFLGD +L LI+ L Sbjct: 1712 MMLDGYDELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHL 1771 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + G L+ ++LV+ + +A + R S V + IQ + Sbjct: 1772 YEDSRQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENG 1831 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 S+ YL G E + K + A + V + Sbjct: 1832 HSISEEYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSE 1891 Query: 180 RSGPDHD----------------------------PRFTVVVEISGLAPAQGMDCSKRAA 211 + R V V++ G +G+ + R A Sbjct: 1892 IEQFSTNVPKSPIRELLELEPETAKFGRPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIA 1951 Query: 212 EQVAAAEVLKREG 224 + AA LK+ Sbjct: 1952 KCTAAKCALKKLK 1964 Score = 43.0 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 SL+ +ALT S+ + + ERLE +GD L I+T L+ +D+ EG+LS + V Sbjct: 1439 PSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQV 1496 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 S ++ R+ L + + D +E Sbjct: 1497 SNLNLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELE 1537 >gi|90412086|ref|ZP_01220093.1| ribonuclease III [Photobacterium profundum 3TCK] gi|90327064|gb|EAS43443.1| ribonuclease III [Photobacterium profundum 3TCK] Length = 224 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 104/207 (50%), Gaps = 6/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L++++GY F + L+ +LTH S ERLEFLGD IL +I+ L++ F Sbjct: 6 NRLQRKLGYQFNSTELMTLSLTHRSA---NGTHNERLEFLGDSILSFVIADDLYHRFPHV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV +T +++ RE +L ++ + K SI AD VE++I A+ Sbjct: 63 DEGDMSRMRATLVRGKTLAELGREFELGDYLLLGPGELKSGGFRRDSILADCVEAIIGAI 122 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD E + +++ R ++D KT LQE + P Y VT G Sbjct: 123 YLDSDTEQVRKVILSWYQSRLETIQPGINQKDPKTRLQECLQGRRLALPAYTVTKVHGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210 H+ FTV E++GL P G S+R Sbjct: 183 HNQEFTVQCEVTGLDKPVIGKGSSRRK 209 >gi|77359683|ref|YP_339258.1| RNase III, ds RNA [Pseudoalteromonas haloplanktis TAC125] gi|76874594|emb|CAI85815.1| RNase III, ds RNA [Pseudoalteromonas haloplanktis TAC125] Length = 200 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 99/200 (49%), Gaps = 5/200 (2%) Query: 27 LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86 +TH S + ERLEFLGD IL +I+ L+ F A+EG+LS ++LV +T ++ Sbjct: 1 MTHRS---HKGQHNERLEFLGDSILSFVIANALYAKFPKAREGDLSRMRSTLVRGQTLAE 57 Query: 87 VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146 E L ++R+ K S AD VE++I A++LD IE G + ++++R Sbjct: 58 FGLEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIGAVFLDSDIERCGELILSWYEER 117 Query: 147 ALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 ++D KT LQE A+ P Y V G H+ FTV + G+ + Sbjct: 118 LNAISPGLNQKDPKTLLQEHLQARKLSLPGYTVVDTKGQAHNQTFTVECIVDGMDSIISV 177 Query: 205 DCSKRAAEQVAAAEVLKREG 224 S+R AEQ AA + LK Sbjct: 178 GSSRRKAEQKAAEKALKILK 197 >gi|315604391|ref|ZP_07879457.1| ribonuclease III [Actinomyces sp. oral taxon 180 str. F0310] gi|315314097|gb|EFU62148.1| ribonuclease III [Actinomyces sp. oral taxon 180 str. F0310] Length = 241 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 89/209 (42%), Gaps = 5/209 (2%) Query: 20 RSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 +LL+ AL H S ++ + ERLEFLGD +L ++I+ L+ + E +LS + Sbjct: 28 PTLLQLALVHRSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRAA 87 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 VS + + AR + L F+ + SI +D E+LI A YL G+E A Sbjct: 88 TVSQQPLAAAARRIGLGDFVFLGKGESTHGGRDKDSILSDTFEALIGATYLTSGLEEARR 147 Query: 138 FV-DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + + A + + L G+ GPDH FT +S Sbjct: 148 VILARLGFLLADAPSRGQHQDWKTLLVEYSQSKGLGEVSYEVEGEGPDHQRVFTARAYVS 207 Query: 197 G--LAPAQGMDCSKRAAEQVAAAEVLKRE 223 A +G SK+ AE AA + +KR Sbjct: 208 ESSEALGEGRASSKKHAENAAAQDAMKRL 236 >gi|91789485|ref|YP_550437.1| ribonuclease III [Polaromonas sp. JS666] gi|91698710|gb|ABE45539.1| RNAse III [Polaromonas sp. JS666] Length = 233 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 71/212 (33%), Positives = 104/212 (49%), Gaps = 6/212 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L+KR+ + F+N LL +ALTH S S + ER+EFLGD +L L ++ LL+ Sbjct: 10 DLLALQKRLQHEFSNPKLLAQALTHRSFS---ADHNERIEFLGDSVLNLAVAGLLYEQLS 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV +T ++A L L +R+ + SI AD +E++I Sbjct: 67 ELPEGDLSRVRANLVKQDTLHKLAVTLGLPEMLRLGEGEARSGGQKRPSILADALEAVIG 126 Query: 125 ALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A+YLD G + A + + +D KTELQEW + P Y+V G Sbjct: 127 AVYLDAGFDKADQLVRRLFRNVEINPQMQAIGKDPKTELQEWLQGRKMNLPIYRVVGTMG 186 Query: 183 PDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 H F V EI+ A+ G+ S+RA EQ Sbjct: 187 AAHKQTFDVECEITEYGRAERGIGGSRRAGEQ 218 >gi|258541744|ref|YP_003187177.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-01] gi|256632822|dbj|BAH98797.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-01] gi|256635879|dbj|BAI01848.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-03] gi|256638934|dbj|BAI04896.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-07] gi|256641988|dbj|BAI07943.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-22] gi|256645043|dbj|BAI10991.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-26] gi|256648098|dbj|BAI14039.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-32] gi|256651151|dbj|BAI17085.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654142|dbj|BAI20069.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-12] Length = 238 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 78/218 (35%), Positives = 110/218 (50%), Gaps = 12/218 (5%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----------SYERLEFLGDRIL 51 R LE R+GY F N LL++ALTH S +H S ERLEF+GDR+L Sbjct: 6 RFRLEELEVRLGYRFVNPDLLQEALTHRSAAHQKAGGRKRQKAKGAGSNERLEFIGDRVL 65 Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 GLL++ L F + +EG L R LVS + +++A LDL + V++ + Sbjct: 66 GLLMAEWLLERFPNEQEGALGSRLAHLVSRVSLAEIADRLDLPQSLTVAAHEARAGVQTA 125 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 ++ AD +E+++ A++LDGG+E A V +WK +D KT LQEW + Sbjct: 126 ANVVADALEAVLGAVFLDGGLEPARQMVRDWWKSALDAQAHPPKDPKTALQEWVLGRGQS 185 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 P Y+ GP H P F V V GL +G SKR Sbjct: 186 LPVYETIGADGPSHAPLFVVRVTAGGL-FGEGRAGSKR 222 >gi|6102924|emb|CAB59269.1| hypothetical protein [Homo sapiens] Length = 525 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 269 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 328 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 329 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 388 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 389 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 448 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 449 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 504 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 505 SAAAKRALRSLK 516 >gi|90580325|ref|ZP_01236132.1| ribonuclease III [Vibrio angustum S14] gi|90438627|gb|EAS63811.1| ribonuclease III [Vibrio angustum S14] Length = 224 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 106/207 (51%), Gaps = 6/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L++++GY F N L+ ALTH S ERLEFLGD IL +I+ L++ F S Sbjct: 6 NRLQRKLGYQFNNCELMTLALTHRSA---NGTHNERLEFLGDSILSFVIADDLYHRFPSV 62 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG++S +LV +T +++ RE +L + + K SI AD VE++I A+ Sbjct: 63 DEGDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFRRDSILADCVEAIIGAI 122 Query: 127 YLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD +E + V + ++ G ++D KT LQE + P Y VT G Sbjct: 123 YLDSDVEQVRSIVLAWYKTRLDTIEPGINQKDPKTRLQECLQGRRLPLPAYTVTKVQGEA 182 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210 H+ FTV +++GL P G S+R Sbjct: 183 HNQEFTVQCDVTGLDKPVIGKGGSRRK 209 >gi|308237838|ref|NP_001184123.1| endoribonuclease Dicer [Sus scrofa] gi|307715909|gb|ADN88174.1| dicer [Sus scrofa] Length = 1915 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 96/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E++I Y+F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1659 FENFERKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1718 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111 G L+ ++LV+ + +A + D + + S V Sbjct: 1719 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1778 Query: 112 -------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 D+ ESL A+Y+D G+ + + Y R L Sbjct: 1779 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1838 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1839 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1894 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1895 SAAARRALRSLK 1906 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 6/83 (7%) Query: 14 GYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 GY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG Sbjct: 1282 GYSPRTPGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEG 1339 Query: 70 ELSVRFNSLVSAETCSQVARELD 92 LS + VS ++ ++ Sbjct: 1340 RLSYMRSKKVSNCNLYRLGKKKG 1362 >gi|319640160|ref|ZP_07994887.1| ribonuclease 3 [Bacteroides sp. 3_1_40A] gi|317388438|gb|EFV69290.1| ribonuclease 3 [Bacteroides sp. 3_1_40A] Length = 308 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 5/227 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57 Y K +G+ + S+ E+AL H S+S + ERLEFLGD IL +++ Sbjct: 16 DRESYLRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVAD 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +++ F+ +EG L+ + +V ET +++A E+ L I+ ++ + Sbjct: 76 IVYKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTARQSSHNSYMCGNAFEA 135 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +V ++ + K + + K++L EW+ + Sbjct: 136 LVGAIYLDRGYR-ACKYFMEHRIIGPYINLEKISRKEVNFKSKLIEWSQKNRFEVTFELI 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T + P F V + G++ +G SK+ ++Q+AA L + Sbjct: 195 TQSHDQGYSPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGKIK 241 >gi|148658678|ref|YP_001278883.1| ribonuclease III [Roseiflexus sp. RS-1] gi|254807897|sp|A5V230|RNC_ROSS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|148570788|gb|ABQ92933.1| RNAse III [Roseiflexus sp. RS-1] Length = 237 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 72/215 (33%), Positives = 105/215 (48%), Gaps = 8/215 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS------YQESYERLEFLGDRILGLLI 55 L R+G F+++ LLE+ALTHSS + + +S ERLEFLGD I+ L Sbjct: 1 MRKSVDELSARLGVTFSDQRLLEQALTHSSFLNEHVEERMHLDSNERLEFLGDAIINFLA 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + L+F F A EGEL+ +L+ ET + A+ +L +++ ++ ++ Sbjct: 61 ARLVFERFPDAGEGELTAWRTALIRTETLAGFAQRYNLGAYVLLARGEESSGARQRQALL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 AD E++IAAL+LD G+ TF + +L D K+ LQ A+ VTP Sbjct: 121 ADTFEAVIAALFLDQGLNAVRTFLLPLFEAELASLPDRTLPVDYKSRLQARIQAERRVTP 180 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 Y RSGP+H P FTV V G SK Sbjct: 181 RYHEIDRSGPEHRPEFTVEVRAGEERLGTGKGPSK 215 >gi|197122613|ref|YP_002134564.1| ribonuclease III [Anaeromyxobacter sp. K] gi|196172462|gb|ACG73435.1| Ribonuclease III [Anaeromyxobacter sp. K] Length = 383 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 73/212 (34%), Positives = 112/212 (52%), Gaps = 6/212 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHF 63 LE R+G A +R ALTH S + ++E ERLEFLGD ++ L +S L F Sbjct: 27 ALEARLGIAVTDRQAALAALTHKSYVNEHREDGLQDNERLEFLGDAVIDLAVSHRLMERF 86 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 SA+EG+LS ++V + + +AR LDL + +R+ +S+ AD +E++I Sbjct: 87 PSAREGDLSKMRAAVVDEQGLAGMARALDLGTLLRLGRGEELTGGRQKSSLLADAMEAVI 146 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+Y G+ FVD++ + ++ RD KT+LQE + ++ TP Y+V Sbjct: 147 AAVYQGQGLPAVLCFVDRFLGEAFARAAAGTLDRDFKTQLQELSQSRLRATPRYRVVAEH 206 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 GPDH F V ++ G +G SK+ AEQ Sbjct: 207 GPDHSKTFEVETDLRGEVLGRGAGRSKKDAEQ 238 >gi|220917396|ref|YP_002492700.1| Ribonuclease III [Anaeromyxobacter dehalogenans 2CP-1] gi|219955250|gb|ACL65634.1| Ribonuclease III [Anaeromyxobacter dehalogenans 2CP-1] Length = 383 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 73/212 (34%), Positives = 112/212 (52%), Gaps = 6/212 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHF 63 LE R+G A +R ALTH S + ++E ERLEFLGD ++ L +S L F Sbjct: 27 ALEARLGIAVTDRQAALAALTHKSYVNEHREDGLQDNERLEFLGDAVIDLAVSHRLMERF 86 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 SA+EG+LS ++V + + +AR LDL + +R+ +S+ AD +E++I Sbjct: 87 PSAREGDLSKMRAAVVDEQGLAGMARALDLGTLLRLGRGEELTGGRQKSSLLADAMEAVI 146 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+Y G+ FVD++ + ++ RD KT+LQE + ++ TP Y+V Sbjct: 147 AAVYQGQGLPAVLCFVDRFLGEAFARAAAGTLDRDFKTQLQELSQSRLRATPRYRVVAEH 206 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 GPDH F V ++ G +G SK+ AEQ Sbjct: 207 GPDHSKTFEVETDLRGEVLGRGAGRSKKDAEQ 238 >gi|146318845|ref|YP_001198557.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33] gi|145689651|gb|ABP90157.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33] Length = 196 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 87/195 (44%), Gaps = 1/195 (0%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 SI+ ERLEFLGD +L L+IS L+ + EGE+S ++ V E+ + +R Sbjct: 2 SIALLKISHNERLEFLGDAVLQLMISKYLYQKYPDRPEGEMSKLRSTFVREESLAGFSRA 61 Query: 91 LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALK 149 F+R+ K +I D E+ + AL LD G + F+ K R Sbjct: 62 CGFDRFLRLGKGEEKSGGRNRDTILGDAFEAFLGALLLDKGEKTVEEFIHKVMIPRLEKG 121 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + + D KT LQE + Y+V SGP HD F V V +G SK+ Sbjct: 122 NFERVTDYKTALQEILQVNGEIAISYQVIAESGPAHDKTFEVEVSADQRVIGRGRGRSKK 181 Query: 210 AAEQVAAAEVLKREG 224 AEQ AA ++ G Sbjct: 182 LAEQAAAKNAVEARG 196 >gi|56478590|ref|YP_160179.1| ribonuclease III [Aromatoleum aromaticum EbN1] gi|81598583|sp|Q5P086|RNC_AZOSE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|56314633|emb|CAI09278.1| ribonuclease III [Aromatoleum aromaticum EbN1] Length = 225 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 70/208 (33%), Positives = 102/208 (49%), Gaps = 6/208 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L++ +G+ F N +LLE+ALTH S + ERLEFLGD IL +++ LF F Sbjct: 4 KLDRLQRSLGHRFDNPALLEQALTHRSFGQ---PNNERLEFLGDSILNCVVAIALFERFA 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S +EGE+S SLV + +VA ELDL ++R+ K SI AD +E++ A Sbjct: 61 SLREGEMSRLRASLVCQDGLHRVALELDLGEYLRLGEGEMKSGGFRRPSILADALEAVFA 120 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +LD G A +D+ + +D KT LQE + P Y + G Sbjct: 121 ATFLDQGFAAAKAVIDRLYDPMIAAIDPGVAAKDPKTALQELLQGRKLPLPTYVMAKVHG 180 Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKR 209 H F VV E++ L G ++R Sbjct: 181 EAHAQEFEVVCEVNALNLRTTGRGTNRR 208 >gi|294787661|ref|ZP_06752905.1| ribonuclease III [Simonsiella muelleri ATCC 29453] gi|294483954|gb|EFG31637.1| ribonuclease III [Simonsiella muelleri ATCC 29453] Length = 235 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 111/223 (49%), Gaps = 10/223 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L++ I + F N +L+++ALTH S S ++YERLEF+GD IL +++ +L+ F Sbjct: 11 QKLQQEINFLFKNPNLIQQALTHRSYS---SQNYERLEFIGDSILNYVVAKMLYEAFPKL 67 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LS LV T + +AR+L + + + K SI AD +E+L AA+ Sbjct: 68 PEGRLSPLRAQLVKEATLADIARQLHIGDALFLGVGELKSGGHDRASILADALEALFAAI 127 Query: 127 YLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LD + + K + Q+ + + +DAKT LQE + P+Y++ ++G Sbjct: 128 SLDSDFATSEKIIRKIFSQKIKELDTSQSAKDAKTSLQELLQGQKLTLPKYRIDKQTGEG 187 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGIW 226 +D F V ++ L S+R AEQ A + + +W Sbjct: 188 NDAIFDVSCDLGELGKIFYAQASSRRTAEQECAKQAI----VW 226 >gi|330717913|ref|ZP_08312513.1| ribonuclease III [Leuconostoc fallax KCTC 3537] Length = 236 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 91/230 (39%), Gaps = 7/230 (3%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 MS + L + +F N +LL +ALT + + + + Y+RLEFLGD ++ + Sbjct: 1 MSVDSFKQYLNQTFAISFDNETLLLEALTQRNYLNEHPDETGRDYQRLEFLGDAVMQETV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + LF + EG+L+ ++V + + AR++ L IR+ + S+ Sbjct: 61 AEYLFRRYPKWHEGQLTEMRIAMVQTRSFAHFARQVRLNEAIRLGKGEEMNGARDRDSLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ I ALYLD G + F+D + G Sbjct: 121 EDIWEAFIGALYLDQGADTVKRFLDATLFAAVDTDFFDHFIDFKSRLQEKLQANGPVDID 180 Query: 176 KVTFRSG--PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T D+ F V + A+G S + AE+ AA + L Sbjct: 181 YNTISETILADNSTCFEASVSLDDRELARGTGKSIKDAEKAAARKALNSL 230 >gi|157953758|ref|YP_001498649.1| hypothetical protein AR158_C568R [Paramecium bursaria Chlorella virus AR158] gi|156068406|gb|ABU44113.1| hypothetical protein AR158_C568R [Paramecium bursaria Chlorella virus AR158] Length = 268 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 5/221 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +E IG + + A S + + +YER+EF+GD +LG +I+ L+++F Sbjct: 45 NDIEYLIGMPIIDFEYYKTAF---SYNAIVEGESTYERMEFVGDSVLGFIIARYLYDNFP 101 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS VS + S +A + L +F+ + + I DV E+L+ Sbjct: 102 GKDEGFLSRLRTKFVSGKFLSSIALRMGLHNFVIMHQKGLYRGWNTNPRILEDVFEALMG 161 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+Y D GI A F + A + K + V+ Sbjct: 162 AIYFDLGINAAKQFFMSTLVKYADIHNLMIDTNYKDRLLKHTRKIELQRPEFVSVFEKGG 221 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +P F V V I+G + G S++ AEQ A+ L GI Sbjct: 222 ANPSFVVDVVINGQKISTGTGKSRKDAEQNASKLALYSMGI 262 >gi|157952932|ref|YP_001497824.1| hypothetical protein NY2A_B628R [Paramecium bursaria Chlorella virus NY2A] gi|155123159|gb|ABT15027.1| hypothetical protein NY2A_B628R [Paramecium bursaria Chlorella virus NY2A] Length = 268 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 5/221 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +E IG + + A S + + +YER+EF+GD +LG +I+ L+++F Sbjct: 45 NDIEYLIGMPIIDFEYYKTAF---SYNAIVEGESTYERMEFVGDSVLGFIIARYLYDNFP 101 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS VS + S +A + L +F+ + + I DV E+L+ Sbjct: 102 GKDEGFLSRLRTKFVSGKFLSSIALRMGLHNFVIMHQKGLYRGWNTNPRILEDVFEALMG 161 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+Y D GI A F + A + K + V+ Sbjct: 162 AIYFDLGINAAKQFFMSTLVKYADIHNLMIDTNYKDRLLKHTRKIELQRPEFVSVFEKGG 221 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +P F V V I+G + G S++ AEQ A+ L GI Sbjct: 222 ANPSFVVDVVINGQKISTGTGKSRKDAEQNASKLALYSMGI 262 >gi|199597132|ref|ZP_03210564.1| dsRNA-specific ribonuclease [Lactobacillus rhamnosus HN001] gi|258508646|ref|YP_003171397.1| ribonuclease III [Lactobacillus rhamnosus GG] gi|199591936|gb|EDZ00011.1| dsRNA-specific ribonuclease [Lactobacillus rhamnosus HN001] gi|257148573|emb|CAR87546.1| Ribonuclease III [Lactobacillus rhamnosus GG] gi|259649952|dbj|BAI42114.1| ribonuclease III [Lactobacillus rhamnosus GG] Length = 231 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 91/205 (44%), Gaps = 5/205 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 S L +R G F + SLL++A THSS + ++E ERLEFLGD +L L +S L+ Sbjct: 7 VSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYR 66 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EG+L+ + V S ++E +I++ K ++ D+ E+ Sbjct: 67 KFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLEDLFEA 126 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ALYLD G E F + + +D KT LQE V Y + Sbjct: 127 FNGALYLDQGREANIKFAKRIIFPKIDAGEFSADQDHKTALQETLQQNGDVAIVYHLLDE 186 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMD 205 GP H+ +F V VE+ G G Sbjct: 187 KGPAHERQFHVDVEVEGHVLGTGFG 211 >gi|319639176|ref|ZP_07993927.1| ribonuclease 3 [Neisseria mucosa C102] gi|317399360|gb|EFV80030.1| ribonuclease 3 [Neisseria mucosa C102] Length = 239 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 65/217 (29%), Positives = 110/217 (50%), Gaps = 6/217 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 ++KR+GY F N LL++ALTH S + ER EF+GD IL ++ +LF+ F Sbjct: 13 AIQKRLGYEFRNMELLQQALTHRSY---NAKHNERFEFVGDSILNYSVARMLFDAFPKLS 69 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EGELS +LV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 70 EGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAVS 129 Query: 128 LDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D A V + +R ++ ++D+KT LQE A+ P+Y++ ++ Sbjct: 130 FDADFSAAEKVVRHLFAERVKRADLNIGKKDSKTALQEALQARRFALPKYRIEEQAEQTA 189 Query: 186 DPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 D F + ++ L S++ AEQ AA E L+ Sbjct: 190 DAMFVISCDLGELGFICNARGSSRKVAEQKAACEALE 226 >gi|317474593|ref|ZP_07933867.1| ribonuclease III [Bacteroides eggerthii 1_2_48FAA] gi|316909274|gb|EFV30954.1| ribonuclease III [Bacteroides eggerthii 1_2_48FAA] Length = 306 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 K +G+ N ++AL H S S + ERLEFLGD IL ++ +++ HF+ Sbjct: 40 FYKILGFFPRNIRFYQQALLHKSTSVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFE 99 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L ++ S+ + ++ ++ Sbjct: 100 GRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSTRSSSHNSYMYGNAFEALIGAIYL 159 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + K + S K K++L EW+ + D Sbjct: 160 DQGYERCKQFMEEKILKNYIDLDKMSRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDRD 218 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 ++P F V I L G SK+ ++Q AA LK+ Sbjct: 219 YNPMFHTEVLIENLPAGTGTGYSKKESQQNAAQMALKKIK 258 >gi|254281220|ref|NP_001123390.2| endoribonuclease Dicer [Xenopus (Silurana) tropicalis] gi|238064965|sp|B3DLA6|DICER_XENTR RecName: Full=Endoribonuclease Dicer gi|169261418|gb|ACA52289.1| endoribonuclease [Xenopus tropicalis] Length = 1893 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1637 FENFEKKINYPFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1696 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1697 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGM 1756 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y + L Sbjct: 1757 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWHVYYPMMQPLIEKF 1816 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1817 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1872 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1873 SAAARRALRSLK 1884 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 51/143 (35%), Gaps = 2/143 (1%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1270 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1327 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 VS ++ ++ S + VS I S G +V Sbjct: 1328 VSNCNLYRLGKKKGSPSRMVVSIFDPPVNWLPPGYIVNQDKNSDKWESNETSGEDVMVNG 1387 Query: 139 VDKYWKQRALKSGKFRRDAKTEL 161 R+ K E Sbjct: 1388 KIDEDFDDEEDEDLMWRNPKEET 1410 >gi|225847889|ref|YP_002728052.1| ribonuclease III [Sulfurihydrogenibium azorense Az-Fu1] gi|225644365|gb|ACN99415.1| ribonuclease III [Sulfurihydrogenibium azorense Az-Fu1] Length = 238 Score = 113 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 9/228 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61 R LEK + Y F ++SLL A+TH S Y + YE LEFLGD +L L++S +L Sbjct: 11 RVENLEKLLDYNFKDKSLLLAAITHRSFVAEYPVKLKDYEVLEFLGDSVLSLIVSEILIK 70 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS +++VS S++A+ L+L F+ +S + S S+ DV E+ Sbjct: 71 QFPDAREGDLSQLRSAIVSEAYLSKLAKLLNLGQFVLISKGEKSQKGSERDSLLCDVFEA 130 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ-----RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + A+Y+D + + +K+ RD K+ LQ +G P+Y+ Sbjct: 131 VFGAIYIDTDYNIDTPRNVFNKLFKEKLLQDIKTENIPRDYKSLLQIETQKLYGKIPKYR 190 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + GP+HD F V EI + SK+ AE AA E ++ Sbjct: 191 LIHSEGPEHDKVFVVECEIEKIKTTG-KGKSKKEAETQAAKEAFRKIK 237 >gi|241758554|ref|ZP_04756671.1| ribonuclease III [Neisseria flavescens SK114] gi|241321297|gb|EER57457.1| ribonuclease III [Neisseria flavescens SK114] Length = 239 Score = 113 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 65/217 (29%), Positives = 110/217 (50%), Gaps = 6/217 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 ++KR+GY F N LL++ALTH S + ER EF+GD IL ++ +LF+ F Sbjct: 13 AIQKRLGYEFRNMELLQQALTHRSY---NAKHNERFEFVGDSILNYSVARMLFDAFPKLS 69 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EGELS +LV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 70 EGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAVS 129 Query: 128 LDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D A V + +R ++ ++D+KT LQE A+ P+Y++ ++ Sbjct: 130 FDADFSAAEKVVRHLFAERVKRADLNIGKKDSKTALQEALQARRFALPKYRIEEQAEQTA 189 Query: 186 DPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 D F + ++ L S++ AEQ AA E L+ Sbjct: 190 DAMFVISCDLGELGFICNARGSSRKVAEQKAACEALE 226 >gi|109478606|ref|XP_001068155.1| PREDICTED: dicer 1, ribonuclease type III [Rattus norvegicus] gi|109479876|ref|XP_001069041.1| PREDICTED: dicer 1, ribonuclease type III [Rattus norvegicus] gi|149025439|gb|EDL81806.1| rCG20888 [Rattus norvegicus] Length = 1918 Score = 113 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 95/252 (37%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1662 FENFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1721 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111 G L+ ++LV+ + +A + D + + S V Sbjct: 1722 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1781 Query: 112 -------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 D+ ESL A+Y+D G+ + + Y R L Sbjct: 1782 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1841 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1842 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1897 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1898 SAAARRALRSLK 1909 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1351 VSNCNLYRLGKKQG 1364 >gi|218131792|ref|ZP_03460596.1| hypothetical protein BACEGG_03413 [Bacteroides eggerthii DSM 20697] gi|217986095|gb|EEC52434.1| hypothetical protein BACEGG_03413 [Bacteroides eggerthii DSM 20697] Length = 301 Score = 113 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 K +G+ N ++AL H S S + ERLEFLGD IL ++ +++ HF+ Sbjct: 35 FYKILGFFPRNIRFYQQALLHKSTSVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFE 94 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET +++A E+ L ++ S+ + ++ ++ Sbjct: 95 GRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSTRSSSHNSYMYGNAFEALIGAIYL 154 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + K + S K ++ K V+ E D Sbjct: 155 DQGYERCKQFMEEKILKNYIDLDKMSRKEVNFKSKLIEWSQKNKMEVSFELIEQSLD-RD 213 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 ++P F V I L G SK+ ++Q AA LK+ Sbjct: 214 YNPMFHTEVLIENLPAGTGTGYSKKESQQNAAQMALKKIK 253 >gi|19553272|ref|NP_601274.1| ribonuclease III [Corynebacterium glutamicum ATCC 13032] gi|62390909|ref|YP_226311.1| ribonuclease III [Corynebacterium glutamicum ATCC 13032] gi|28201879|sp|Q8NNV6|RNC_CORGL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|21324844|dbj|BAB99467.1| dsRNA-specific ribonuclease [Corynebacterium glutamicum ATCC 13032] gi|41326248|emb|CAF20410.1| RIBONUCLEASE III [Corynebacterium glutamicum ATCC 13032] Length = 247 Score = 113 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 4/225 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 A+ + L +G R LL ALTH S ++ + ERLEFLGD +LGL ++ L Sbjct: 19 DAVDHQPLLDHLGVDIQ-RDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLSVANKL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + S+ E ++S S+VS + +ARE+DL + I + SI AD Sbjct: 78 YEQYPSSPESDVSKMRASIVSRYGLADIAREIDLGNHILLGKGELLTEGRSKDSILADTT 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+L A++ G E A + + + + + + P + + Sbjct: 138 EALFGAIFRQHGFETARDVILRLFAYKIDNASARGIHQDWKTTLQEELAQRKRPMAEYSA 197 Query: 180 RS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 S GPDHD FT +V + G +G +K+ AEQ AA + ++ Sbjct: 198 TSVGPDHDLVFTAIVTLEGEEMGRGEGPNKKLAEQEAAHQAFRKL 242 >gi|116629437|ref|YP_814609.1| dsRNA-specific ribonuclease [Lactobacillus gasseri ATCC 33323] gi|238852587|ref|ZP_04642997.1| ribonuclease III [Lactobacillus gasseri 202-4] gi|282850853|ref|ZP_06260227.1| ribonuclease III [Lactobacillus gasseri 224-1] gi|311110915|ref|ZP_07712312.1| ribonuclease III [Lactobacillus gasseri MV-22] gi|116095019|gb|ABJ60171.1| RNAse III [Lactobacillus gasseri ATCC 33323] gi|238834733|gb|EEQ26960.1| ribonuclease III [Lactobacillus gasseri 202-4] gi|282557805|gb|EFB63393.1| ribonuclease III [Lactobacillus gasseri 224-1] gi|311066069|gb|EFQ46409.1| ribonuclease III [Lactobacillus gasseri MV-22] Length = 226 Score = 113 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 4/212 (1%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57 M ++ + L+++ G F N +LLE A THSS ++ + ++ YE+LEFLGD +L L +S Sbjct: 1 MVSVAFKKNLKEKYGIKFNNENLLEDAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ HF EGEL+ +++V E S+ A E + I + K ++ D Sbjct: 61 YLYRHFPRLNEGELTRMRSNIVRTEGFSEFAIECGFPAEINLGKGEEKAGARKRKTLLED 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 V E+ AL+LD G+ F+ + + G Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQ 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 P F V + ++ ++G +K+ Sbjct: 181 VIAEDES-KPSFKVQLLVNDKKISEGQGRNKK 211 >gi|316975421|gb|EFV58865.1| putative RNase3 domain protein [Trichinella spiralis] Length = 1903 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 86/247 (34%), Gaps = 27/247 (10%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLF 60 + S E IGY F +RSLL +ALTHS+ + + Y+RLEFLGD +L LI+ L+ Sbjct: 1648 NRFSLSQFEDIIGYRFKDRSLLVQALTHSTYFYNEVTDCYQRLEFLGDAVLDHLITRHLY 1707 Query: 61 NHFDSAKEGELSVRF-----------------------NSLVSAETCSQVARELDLASFI 97 G L+ N + + R L ++ Sbjct: 1708 EDKRMHSPGMLTDLRSALYFMYLCPGLMMMIEKFVKTLNIIKENANFDREVRVHLLNLYL 1767 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + + + D+ ES+ A+YLD G + + Y R Sbjct: 1768 LEGEEENAEEQVEVPKALGDIFESVAGAIYLDSGCSLHTVWCIYYNMLREEIEKCCLNPP 1827 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + +++ K + + + V V + G G S R A+ AA Sbjct: 1828 ISPIRDLLEL---EPDRVKFSRVERNAVEGKVKVAVTVEGKGRFVGAGRSYRIAKSTAAK 1884 Query: 218 EVLKREG 224 L+ Sbjct: 1885 RALRYLK 1891 >gi|289662799|ref|ZP_06484380.1| ribonuclease III [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670321|ref|ZP_06491396.1| ribonuclease III [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 227 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 77/216 (35%), Positives = 105/216 (48%), Gaps = 6/216 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 IG+AFA+ +LL +AL H S ERLEFLGD I+ LLI+ L+ + A EG Sbjct: 11 DLIGHAFADPALLAQALRHRSAG---TPHNERLEFLGDGIVNLLIAEALYQRWPKADEGA 67 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ LV + + R L+L + + K SI AD VE+++AA+YLD Sbjct: 68 LTRARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDC 127 Query: 131 GIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G E AL GK +D KT LQEW A+ P Y + SG +H + Sbjct: 128 GFERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQ 187 Query: 189 FTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + A A+G S+R AEQ AA V+ + Sbjct: 188 FHVACILEQPTARAEGQGTSRRLAEQQAATLVIAQL 223 >gi|171463192|ref|YP_001797305.1| Ribonuclease III [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192730|gb|ACB43691.1| Ribonuclease III [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 263 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 104/204 (50%), Gaps = 6/204 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L++R+GY F LL +ALTH S S ++ ERLEFLGD IL +++ +L+ + E Sbjct: 12 LQERLGYTFKKPELLNQALTHRSHSK---KNNERLEFLGDSILNCVVAEMLYERYSDLDE 68 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS +LV + ++A+ L L+ ++R+ K SI AD +E++ A++L Sbjct: 69 GDLSRVRANLVKQQALYEIAQTLSLSDYLRLGEGELKSGGFRRPSILADTLEAVTGAIFL 128 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 DGG E A T + K + +D KT LQE + P Y VT +G H+ Sbjct: 129 DGGFEAAKTSLRKLYSIILAHVDPKTLGKDDKTLLQECLQSYQLPLPAYNVTGTTGAAHN 188 Query: 187 PRFTVVVEISGLAPA-QGMDCSKR 209 +F V I A +G S+R Sbjct: 189 QQFEVECLIPSHKVAVKGEGASRR 212 >gi|163840519|ref|YP_001624924.1| ribonuclease III [Renibacterium salmoninarum ATCC 33209] gi|162953995|gb|ABY23510.1| ribonuclease III [Renibacterium salmoninarum ATCC 33209] Length = 273 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 72/218 (33%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 + L KR+G + L ALTH S ++ + ERLEFLGD +LGL ++ L+ Sbjct: 21 NSAELLKRLGVDI-DAGTLRLALTHRSFAYENGGIPTNERLEFLGDSVLGLSVTDALYRD 79 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EGEL+ R +++VS + VAREL + FI + SI AD +E+L Sbjct: 80 NPGLAEGELAKRRSAVVSTRALAGVARELGVGEFILLGQGELLTDGKNKASILADTMEAL 139 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 A Y+ IE A V + + D KT +QE A + Y+VT + Sbjct: 140 FGAAYICNDIETARQMVMRLVGPLLADAGNFGAATDWKTNIQEHAANRQLGPVRYEVTGQ 199 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 GPDH + ++ I G + G SK+ AEQ AAA Sbjct: 200 -GPDHARTYQALLWIGGTSYQSGRGHSKKEAEQDAAAN 236 >gi|58581478|ref|YP_200494.1| ribonuclease III [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623408|ref|YP_450780.1| ribonuclease III [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|75435762|sp|Q5H1R2|RNC_XANOR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|58426072|gb|AAW75109.1| ribonuclease III [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367348|dbj|BAE68506.1| ribonuclease III [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 226 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 76/214 (35%), Positives = 105/214 (49%), Gaps = 6/214 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ LL +AL H S ERLEFLGD I+ LL++ L+ + A EG L+ Sbjct: 12 IGHAFADPDLLAQALRHRSAG---TPHNERLEFLGDGIVNLLVAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + +A A+G S+R AEQ AA V+ + Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222 >gi|295698532|ref|YP_003603187.1| ribonuclease III [Candidatus Riesia pediculicola USDA] gi|291157177|gb|ADD79622.1| ribonuclease III [Candidatus Riesia pediculicola USDA] Length = 227 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 110/224 (49%), Gaps = 12/224 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+K IGY F + L ++LTH S + ERLEFLGD IL L+IS L++ F S E Sbjct: 2 LQKNIGYRFNHLDFLYQSLTHRS---TNLSHNERLEFLGDSILNLIISKFLYDEFLSKNE 58 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GE+S ++LV T S +A +L + SFI + K+ SI ++ +E++I A++L Sbjct: 59 GEMSRTRSNLVKEGTLSDIANQLGIGSFINLGLGEIKNHGFLKRSILSNALEAIIGAIFL 118 Query: 129 DGGIEVAGTFVDKYWKQRAL----KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D G + R + +D KT+LQE P+Y++ G D Sbjct: 119 DSGSNIKTIENVIMNWYRNHADLINLSRDEKDPKTKLQEHLQKFHLPLPKYELLKSVGYD 178 Query: 185 HDPRFTVVVEISGL-----APAQGMDCSKRAAEQVAAAEVLKRE 223 H+ +FT+V ++ G G + AE++AA + + Sbjct: 179 HEKQFTIVCKVFGFRKSDHFITIGTGKKYKEAEKLAAKHMFDKI 222 >gi|229815433|ref|ZP_04445765.1| hypothetical protein COLINT_02481 [Collinsella intestinalis DSM 13280] gi|229808966|gb|EEP44736.1| hypothetical protein COLINT_02481 [Collinsella intestinalis DSM 13280] Length = 241 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 73/208 (35%), Positives = 106/208 (50%), Gaps = 3/208 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 + + ++ G+ F + LL A+TH S SYERLEFLGD ILG +++ LF Sbjct: 6 KLALAQEICGHEFTDVQLLRSAITHPSAVEGEPVSASYERLEFLGDSILGSIVALSLFKT 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + + EG+L+ SLVS T S+V EL + I + + + M S +V E+L Sbjct: 66 YGAFDEGKLTRLKVSLVSGATLSEVGLELGIDKIIILGASEQGTGARGMHSALENVYEAL 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 I ALYLDGG +VA F+ + K A + + + K+ LQE + P YKV Sbjct: 126 IGALYLDGGWDVAEAFITRTLKPHLADERAEHPSNPKSYLQECVQSDRMDPPAYKVIGED 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GP H P FT V + G+ +G SK+ Sbjct: 186 GPAHQPTFTAVALVDGIRRGRGTGSSKK 213 >gi|282856664|ref|ZP_06265932.1| ribonuclease III [Pyramidobacter piscolens W5455] gi|282585513|gb|EFB90813.1| ribonuclease III [Pyramidobacter piscolens W5455] Length = 231 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 74/207 (35%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 ++RIGY F++ +LLE+ALTHSS +H ERLEFLGD +L +LIS LF Sbjct: 11 DLLEFQRRIGYEFSDPALLEEALTHSSYAHERGVPFWNERLEFLGDAVLEVLISEELFRA 70 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 A EG+++ SLV E S L L + S ++ D VE+L Sbjct: 71 RPDASEGQMTRERASLVREEVLSAWGHSLGL---DGLLLLGMGQRGSASENMIGDAVEAL 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I ALYLDGG+E A F+++ R + + + D K+ LQ + G P Y++ R G Sbjct: 128 IGALYLDGGLEQARAFLNR----RPRGAAREQLDPKSRLQILCQERNGPAPYYELLERKG 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209 P+HDP F + G A+G S++ Sbjct: 184 PEHDPIFIARALLDGRELARGRGTSRK 210 >gi|315104262|gb|EFT76238.1| ribonuclease III [Propionibacterium acnes HL050PA2] gi|315106730|gb|EFT78706.1| ribonuclease III [Propionibacterium acnes HL030PA1] Length = 265 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 38 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + ++AR+L + I++ + TSI AD E+L+ Sbjct: 97 PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 157 GAVELSAGLPNVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253 >gi|161621795|ref|YP_056158.2| ribonuclease III [Propionibacterium acnes KPA171202] Length = 246 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 19 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 77 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + ++AR+L + I++ + TSI AD E+L+ Sbjct: 78 PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 137 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 138 GAVELSAGLPNVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 196 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 197 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 234 >gi|50840533|gb|AAT83200.1| ribonuclease III [Propionibacterium acnes KPA171202] Length = 366 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 139 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 197 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + ++AR+L + I++ + TSI AD E+L+ Sbjct: 198 PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 257 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 258 GAVELSAGLPNVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 316 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 317 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 354 >gi|313819677|gb|EFS57391.1| ribonuclease III [Propionibacterium acnes HL046PA2] gi|313822217|gb|EFS59931.1| ribonuclease III [Propionibacterium acnes HL036PA1] gi|313823550|gb|EFS61264.1| ribonuclease III [Propionibacterium acnes HL036PA2] gi|314924611|gb|EFS88442.1| ribonuclease III [Propionibacterium acnes HL036PA3] gi|314962025|gb|EFT06126.1| ribonuclease III [Propionibacterium acnes HL002PA2] gi|315087196|gb|EFT59172.1| ribonuclease III [Propionibacterium acnes HL002PA3] Length = 265 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 38 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + Q+AR+L + I++ + TSI AD E+L+ Sbjct: 97 PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253 >gi|313807892|gb|EFS46373.1| ribonuclease III [Propionibacterium acnes HL087PA2] gi|313825876|gb|EFS63590.1| ribonuclease III [Propionibacterium acnes HL063PA1] gi|314986461|gb|EFT30553.1| ribonuclease III [Propionibacterium acnes HL005PA2] gi|314990820|gb|EFT34911.1| ribonuclease III [Propionibacterium acnes HL005PA3] gi|315083515|gb|EFT55491.1| ribonuclease III [Propionibacterium acnes HL027PA2] gi|327329789|gb|EGE71545.1| ribonuclease III [Propionibacterium acnes HL096PA3] gi|327446474|gb|EGE93128.1| ribonuclease III [Propionibacterium acnes HL013PA2] gi|328752230|gb|EGF65846.1| ribonuclease III [Propionibacterium acnes HL020PA1] Length = 265 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 38 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + Q+AR+L + I++ + TSI AD E+L+ Sbjct: 97 PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253 >gi|313763647|gb|EFS35011.1| ribonuclease III [Propionibacterium acnes HL013PA1] gi|313773586|gb|EFS39552.1| ribonuclease III [Propionibacterium acnes HL074PA1] gi|313794040|gb|EFS42064.1| ribonuclease III [Propionibacterium acnes HL110PA1] gi|313801428|gb|EFS42679.1| ribonuclease III [Propionibacterium acnes HL110PA2] gi|313811637|gb|EFS49351.1| ribonuclease III [Propionibacterium acnes HL083PA1] gi|313813554|gb|EFS51268.1| ribonuclease III [Propionibacterium acnes HL025PA1] gi|313816825|gb|EFS54539.1| ribonuclease III [Propionibacterium acnes HL059PA1] gi|313829556|gb|EFS67270.1| ribonuclease III [Propionibacterium acnes HL063PA2] gi|313831378|gb|EFS69092.1| ribonuclease III [Propionibacterium acnes HL007PA1] gi|313834990|gb|EFS72704.1| ribonuclease III [Propionibacterium acnes HL056PA1] gi|313839852|gb|EFS77566.1| ribonuclease III [Propionibacterium acnes HL086PA1] gi|314914649|gb|EFS78480.1| ribonuclease III [Propionibacterium acnes HL005PA4] gi|314919238|gb|EFS83069.1| ribonuclease III [Propionibacterium acnes HL050PA1] gi|314920852|gb|EFS84683.1| ribonuclease III [Propionibacterium acnes HL050PA3] gi|314930530|gb|EFS94361.1| ribonuclease III [Propionibacterium acnes HL067PA1] gi|314957411|gb|EFT01514.1| ribonuclease III [Propionibacterium acnes HL002PA1] gi|314963605|gb|EFT07705.1| ribonuclease III [Propionibacterium acnes HL082PA1] gi|314968563|gb|EFT12661.1| ribonuclease III [Propionibacterium acnes HL037PA1] gi|314974253|gb|EFT18349.1| ribonuclease III [Propionibacterium acnes HL053PA1] gi|314976742|gb|EFT20837.1| ribonuclease III [Propionibacterium acnes HL045PA1] gi|314984443|gb|EFT28535.1| ribonuclease III [Propionibacterium acnes HL005PA1] gi|315079459|gb|EFT51452.1| ribonuclease III [Propionibacterium acnes HL053PA2] gi|315081314|gb|EFT53290.1| ribonuclease III [Propionibacterium acnes HL078PA1] gi|315095393|gb|EFT67369.1| ribonuclease III [Propionibacterium acnes HL038PA1] gi|315099274|gb|EFT71250.1| ribonuclease III [Propionibacterium acnes HL059PA2] gi|315100492|gb|EFT72468.1| ribonuclease III [Propionibacterium acnes HL046PA1] gi|315109074|gb|EFT81050.1| ribonuclease III [Propionibacterium acnes HL030PA2] gi|327328345|gb|EGE70107.1| ribonuclease III [Propionibacterium acnes HL096PA2] gi|327334306|gb|EGE76020.1| ribonuclease III [Propionibacterium acnes HL097PA1] gi|327444129|gb|EGE90783.1| ribonuclease III [Propionibacterium acnes HL043PA2] gi|327444991|gb|EGE91645.1| ribonuclease III [Propionibacterium acnes HL043PA1] gi|327451940|gb|EGE98594.1| ribonuclease III [Propionibacterium acnes HL092PA1] gi|327455025|gb|EGF01680.1| ribonuclease III [Propionibacterium acnes HL087PA3] gi|327457687|gb|EGF04342.1| ribonuclease III [Propionibacterium acnes HL083PA2] gi|328755143|gb|EGF68759.1| ribonuclease III [Propionibacterium acnes HL087PA1] gi|328758079|gb|EGF71695.1| ribonuclease III [Propionibacterium acnes HL025PA2] gi|328760097|gb|EGF73676.1| ribonuclease III [Propionibacterium acnes HL099PA1] Length = 265 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 38 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + Q+AR+L + I++ + TSI AD E+L+ Sbjct: 97 PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253 >gi|289426387|ref|ZP_06428130.1| ribonuclease III [Propionibacterium acnes SK187] gi|289428762|ref|ZP_06430445.1| ribonuclease III [Propionibacterium acnes J165] gi|295130991|ref|YP_003581654.1| ribonuclease III [Propionibacterium acnes SK137] gi|289153115|gb|EFD01833.1| ribonuclease III [Propionibacterium acnes SK187] gi|289158160|gb|EFD06380.1| ribonuclease III [Propionibacterium acnes J165] gi|291376694|gb|ADE00549.1| ribonuclease III [Propionibacterium acnes SK137] gi|332675870|gb|AEE72686.1| ribonuclease III [Propionibacterium acnes 266] Length = 246 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 19 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 77 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + Q+AR+L + I++ + TSI AD E+L+ Sbjct: 78 PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 137 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 138 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 196 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 197 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 234 >gi|148829108|gb|ABR14013.1| Dicer-1 [Penaeus monodon] Length = 2473 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 85/247 (34%), Gaps = 28/247 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E++IGY F +RS L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 2217 YQVFEEKIGYTFRDRSYLLQAFTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 2276 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A + D + R S V +Q + + Sbjct: 2277 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINE 2336 Query: 125 ALYLDGGIEVAGTFVDKYWK------------------------QRALKSGKFRRDAKTE 160 Y E + K + R + Sbjct: 2337 EYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCREIEQFS 2396 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDH---DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + T + G D + V VEI G G+ + R A+ AA Sbjct: 2397 GVVPKSPIRELLEMEPETAKFGKPERLVDGKVRVSVEIFGKGSFSGVGRNYRIAKSTAAK 2456 Query: 218 EVLKREG 224 L+ Sbjct: 2457 RALRHLK 2463 Score = 41.8 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + + + S++ +ALT S+ + + ERLE +GD L I+T L+ + EG+ Sbjct: 1953 DLLNHPGPSPSVILQALTMSNANDGV--NLERLETIGDSFLKYAITTFLYCTYPQRHEGK 2010 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 LS + VS ++ + L + + D Sbjct: 2011 LSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNW 2048 >gi|42519393|ref|NP_965323.1| ribonuclease III [Lactobacillus johnsonii NCC 533] gi|81667674|sp|Q74IP8|RNC_LACJO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|41583681|gb|AAS09289.1| ribonuclease III [Lactobacillus johnsonii NCC 533] gi|329667082|gb|AEB93030.1| ribonuclease III [Lactobacillus johnsonii DPC 6026] Length = 226 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 4/212 (1%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57 M ++ + L+K+ G F N LLE A THSS ++ + ++ YE+LEFLGD +L L +S Sbjct: 1 MVSVAFKQNLKKKYGIKFNNEKLLEDAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ HF EGEL+ +++V E S+ A E I + K ++ D Sbjct: 61 YLYRHFPRLNEGELTRMRSNIVRTEGFSEFAIECGFPEEINLGKGEEKAGARKRKTLLED 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 V E+ AL+LD G+ F+ + + G Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQ 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 P F V + ++G ++G +K+ Sbjct: 181 VISEDES-KPSFKVQLLVNGEKVSEGQGRNKK 211 >gi|313836649|gb|EFS74363.1| ribonuclease III [Propionibacterium acnes HL037PA2] gi|314928156|gb|EFS91987.1| ribonuclease III [Propionibacterium acnes HL044PA1] gi|314972155|gb|EFT16252.1| ribonuclease III [Propionibacterium acnes HL037PA3] gi|328907982|gb|EGG27742.1| ribonuclease III [Propionibacterium sp. P08] Length = 259 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + TL + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 32 FLTLLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 90 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + Q+AR L + +++ + TSI AD E+L+ Sbjct: 91 PDKPEGQLAKLRSAVVSTVSLGQLARRLGIGPQVKLGRGEERTGGHDKTSILADTTEALL 150 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ A V + ++ + D KT LQE+ P Y++ S Sbjct: 151 GAVELSSGLPDALRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 209 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 210 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 247 >gi|283827860|gb|ADB44075.1| dicer-1 [Marsupenaeus japonicus] Length = 2482 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 85/247 (34%), Gaps = 28/247 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E++IGY F +RS L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 2226 YQVFEEKIGYTFQDRSYLLQAFTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 2285 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A + D + R S V +Q + + Sbjct: 2286 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINE 2345 Query: 125 ALYLDGGIEVAGTFVDKYWK------------------------QRALKSGKFRRDAKTE 160 Y E + K + R + Sbjct: 2346 EYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCREIEQFS 2405 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDH---DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + T + G D + V VEI G G+ + R A+ AA Sbjct: 2406 GVVPKSPIRELLEMEPETAKFGKPERLVDGKVRVSVEIFGKGSFSGVGRNYRIAKSTAAK 2465 Query: 218 EVLKREG 224 L+ Sbjct: 2466 RALRHLK 2472 Score = 41.8 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + + + S++ +ALT S+ + + ERLE +GD L I+T L+ + EG+ Sbjct: 1962 DLLNHPGPSPSVILQALTMSNANDGV--NLERLETIGDSFLKYAITTFLYCTYPQRHEGK 2019 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 LS + VS ++ + L + + D Sbjct: 2020 LSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNW 2057 >gi|9632031|ref|NP_048820.1| hypothetical protein PBCV1_A464R [Paramecium bursaria Chlorella virus 1] gi|2500556|sp|Q98514|A464_PBCV1 RecName: Full=Putative protein A464R gi|1620135|gb|AAC96831.1| similar to Bacillus ribonuclease III, corresponds to Swiss-Prot Accession Number P51833 [Paramecium bursaria Chlorella virus 1] Length = 275 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 5/221 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E IG + S + A S + + +YER+EF+GD +LG +I+ L+++F Sbjct: 52 EDVEYLIGMPIIDFSYYKTAF---SYNAIVEGEATYERMEFVGDSVLGFIIARYLYDNFP 108 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS VS + S +A + L +++ + + I DV E+L+ Sbjct: 109 GKDEGFLSRLRTKFVSGKFLSSIALRMGLHNYVIMHQKGLYRGWNTNPRILEDVFEALMG 168 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+Y D GI A F + A + K + V+ Sbjct: 169 AIYFDLGINAAKQFFMTTLAKYADMQSLMLDTNYKDRLLKHTRKVELPRPEFVSVFEKGG 228 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +P F V V I+G + G S++ AEQ A+ L G+ Sbjct: 229 ANPSFIVDVVINGQKISTGTGKSRKDAEQNASKIALHTMGV 269 >gi|268319230|ref|YP_003292886.1| ribonuclease III [Lactobacillus johnsonii FI9785] gi|262397605|emb|CAX66619.1| ribonuclease III [Lactobacillus johnsonii FI9785] Length = 226 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 4/212 (1%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57 M ++ + L+K+ G F N LLE A THSS ++ + ++ YE+LEFLGD +L L +S Sbjct: 1 MVSVAFKQNLKKKYGIKFNNEKLLENAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ HF EGEL+ +++V E S+ A E I + K ++ D Sbjct: 61 YLYRHFPRLNEGELTRMRSNIVRTEGFSEFAIECGFPEEIDLGKGEEKAGARKRKTLLED 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 V E+ AL+LD G+ F+ + + G Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQ 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 P F V + ++G ++G +K+ Sbjct: 181 VISEDES-KPSFKVQLLVNGEKVSEGQGRNKK 211 >gi|298291621|ref|YP_003693560.1| ribonuclease III [Starkeya novella DSM 506] gi|296928132|gb|ADH88941.1| ribonuclease III [Starkeya novella DSM 506] Length = 243 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 86/208 (41%), Positives = 121/208 (58%), Gaps = 6/208 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI------SHSYQESYERLEFLGDRILGLLISTLL 59 LE +G+ FA+R+ L ALTH S S + SY+RLEFLGD +LGL++S +L Sbjct: 18 LDALEAALGHRFASRAHLRLALTHISSVTGAQGSQARVRSYQRLEFLGDHVLGLVVSDML 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + +A+EGELS R LV E C++VAR +DL +IR+ + +I ADV Sbjct: 78 YRAYPNAEEGELSRRLADLVCEEACAEVARAMDLGPYIRLGPGEDRTGGRERPAILADVA 137 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+++AA+YLD G E A V+K+W+ R G RD KT LQEWA + P Y++ Sbjct: 138 EAVLAAVYLDAGFEAAEAMVEKFWRPRLSTPGSSARDPKTALQEWAQGRGLPPPHYRLVE 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 RSGPDH+P F + VE+ G + S Sbjct: 198 RSGPDHNPEFRIAVELPGYTAIEATGPS 225 >gi|160903376|ref|YP_001568957.1| ribonuclease III [Petrotoga mobilis SJ95] gi|160361020|gb|ABX32634.1| Ribonuclease III [Petrotoga mobilis SJ95] Length = 253 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 69/210 (32%), Positives = 99/210 (47%), Gaps = 9/210 (4%) Query: 21 SLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 S+L +AL H S + +S ERLEFLGD +L L+ + + EGE+S Sbjct: 33 SVLFEALCHKSYVFDNENIQRKLDSNERLEFLGDAVLE-LVISEFLYNNYHLSEGEMSKA 91 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 + S ++VA +L L FI +S K SI +D +E+L A +YL G E Sbjct: 92 RAIIGSEIILAEVALKLRLDDFIFLSKGEDKQGGRTKKSILSDTMEALFACIYLSCGYEK 151 Query: 135 AGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 A ++ K K+ G D KT+LQE K PEY + SGP H R+ V Sbjct: 152 AKKYIIKNMKEYIENAVEGNIFLDYKTKLQELTQEKTKKLPEYVLLSASGPSHMKRYKVA 211 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V++ G SK+ AEQ+AA ++ Sbjct: 212 VKLDDEILGIGEGFSKKFAEQLAAKIACEK 241 >gi|21242078|ref|NP_641660.1| ribonuclease III [Xanthomonas axonopodis pv. citri str. 306] gi|24212270|sp|Q8PMV0|RNC_XANAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|21107485|gb|AAM36196.1| ribonuclease III [Xanthomonas axonopodis pv. citri str. 306] Length = 226 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 107/214 (50%), Gaps = 6/214 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ +LL +AL H S ERLEFLGD I+ LLI+ L++ + A EG L+ Sbjct: 12 IGHAFADPALLAQALRHRSAG---TPHNERLEFLGDGIVNLLIAEALYHRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFH 188 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + +A A+G S+R AEQ AA V+ + Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222 >gi|148907962|gb|ABR17101.1| unknown [Picea sitchensis] Length = 685 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 32/249 (12%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+ +GY F+ + LL +A H S + Y+RLEFLGD +L +I++ L++ + Sbjct: 220 IDIDELERLLGYNFSYKGLLLEAFAHPSFNEHNGGCYQRLEFLGDAVLDYIITSYLYSVY 279 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV----------------------SS 101 K G L+ + V+ E+ + VA L ++ Sbjct: 280 PDMKPGYLTDMRSMTVNNESFACVAVRHGLYMYLIQKSDSLSSAVTKYVDFMKALFTADR 339 Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKTE 160 D + + D+VES AL +D G ++ + Q + E Sbjct: 340 DSCDEPEPKCPKVLGDIVESFAGALVIDTGFDLDCVWKLMLNILQPIVTPETLCLQPVRE 399 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-----AQGMDCSKRAAEQVA 215 L E K + +G + V ++SG G S + A++VA Sbjct: 400 LSEVCQHHNLTLDYVKASKGNGNG----YLVEAKVSGKKVSGSVGGTGTRTSIKDAKKVA 455 Query: 216 AAEVLKREG 224 + + L + Sbjct: 456 SKDALLKLK 464 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 6/166 (3%) Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F+S+ + ++E L S L S E Sbjct: 511 PKFNSSPASCSRDLHSVRSTSELIPPCMASLQKNSSTVCEQPLLPLATENDMSSTNQNQE 570 Query: 121 SLIAALYLDGGIEVAGTFVDKYWK-QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + D ++ ++ +F AK+ L E+ K P + Sbjct: 571 AYKEYTNSDHHYDITNKTEYQWPSASWDTDIDQFLGSAKSSLNEFCQKKSWEVPSWVCYQ 630 Query: 180 RSGPDHDPRFT--VVVEISGLAPAQGMD---CSKRAAEQVAAAEVL 220 G H FT V+ + G + + +KR A + A+ L Sbjct: 631 EEGMPHQKSFTYMAVLRLPGNISIECLGEPMKNKRLAMESASRGAL 676 Score = 36.4 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 63/187 (33%), Gaps = 10/187 (5%) Query: 8 TLEKRIGYAFANRSLL-----EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 L++ + +F SL+ +A+T + S ERLE LGD L +S LF Sbjct: 13 ELKELLTASFPEGSLVTASRVLEAITTERCMEGF--SLERLEVLGDAFLKYAVSRRLFLV 70 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---VSSDLRKDVCSFMTSIQADVV 119 +D EG+L+ + ++ + + A+ ++IR + ++ + Sbjct: 71 YDKLDEGQLTKKRSNAIKNSNLYKRAKGKGFPAYIRDEYFDPKQYFALGRPCKNVCTPEL 130 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +I D + K K+ K D L G Sbjct: 131 VHMIHYFEGDNTMTDTDFTSVKCTKRHHWLHMKTIADVVEALIGAYLVDSGFGAALAFLK 190 Query: 180 RSGPDHD 186 G + D Sbjct: 191 WIGIEID 197 >gi|78186018|ref|YP_374061.1| ribonuclease III [Chlorobium luteolum DSM 273] gi|90101633|sp|Q3B6L3|RNC_PELLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|78165920|gb|ABB23018.1| RNAse III [Chlorobium luteolum DSM 273] Length = 276 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 66/212 (31%), Positives = 94/212 (44%), Gaps = 10/212 (4%) Query: 21 SLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 L ALTH S+ H S +RLEFLGD +LGL+IS L+ F EGELS Sbjct: 46 ELYATALTHRSMVHDTTAPEITRSNQRLEFLGDSVLGLIISEYLYRRFPEGTEGELSSYR 105 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE-- 133 +V+ ++ + AR LDL + + + TS AD E+L A+YLD G++ Sbjct: 106 AKIVNGKSLAGFARNLDLGIHLIIGESADQQRIRTSTSTLADAFEALTGAIYLDRGLDAV 165 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + K+ L E + P Y V G +H+ FT+ V Sbjct: 166 REFIEEQIIDSPAFEAMVSTENNHKSRLIEHTQSHQLPPPVYTVLSEEGAEHEKTFTIEV 225 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAE---VLKR 222 +G +G K+ AEQ+AA E L+R Sbjct: 226 SCNGRRLGRGTALRKKDAEQLAAEEAMGALER 257 >gi|227890258|ref|ZP_04008063.1| ribonuclease III [Lactobacillus johnsonii ATCC 33200] gi|227849072|gb|EEJ59158.1| ribonuclease III [Lactobacillus johnsonii ATCC 33200] Length = 226 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 4/212 (1%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57 M ++ + L+K+ G F N LLE A THSS ++ + ++ YE+LEFLGD +L L +S Sbjct: 1 MVSVAFKQNLKKKYGIKFNNEKLLEDAFTHSSYANEHSGRKDYEKLEFLGDAVLELAVSD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ HF EGEL+ +++V E S+ A E I + K ++ D Sbjct: 61 YLYRHFPRLNEGELTRMRSNIVRTEGFSEFAIECGFPEEIDLGKGEEKAGARKRKTLLED 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 V E+ AL+LD G+ F+ + + G Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQ 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 P F V + ++G ++G +K+ Sbjct: 181 VISEDES-KPSFKVQLLVNGEKVSEGQGRNKK 211 >gi|297571639|ref|YP_003697413.1| ribonuclease III [Arcanobacterium haemolyticum DSM 20595] gi|296931986|gb|ADH92794.1| ribonuclease III [Arcanobacterium haemolyticum DSM 20595] Length = 235 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 4/226 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLL 59 M S L G + LL ALTH S + ++ + ERLEF+GD ILG +++ + Sbjct: 1 MHEQDRSPLLDAWGVEIPD-ELLTLALTHRSWAFEHECGNNERLEFMGDSILGAVVAEQI 59 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F+ + EGELS ++ VS + +AR L+L ++IR+ + SI AD V Sbjct: 60 FHDYPEKSEGELSKIKSAAVSERALAGIARGLNLGAYIRLGKGEERTGGRDKDSILADTV 119 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177 E+LIAA Y GG+ V + V + + +++ + D +T ++E A Sbjct: 120 EALIAATYEAGGLRVVISTVRHHLHAKIIEATQMGPALDWRTGMEEKARELGIAGELSYT 179 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GPDH +T V I +G S++A++ A + R Sbjct: 180 IVGEGPDHAKVYTARVFIGETEWGRGDATSRKASKLAACKDAYYRL 225 >gi|296283699|ref|ZP_06861697.1| ribonuclease III [Citromicrobium bathyomarinum JL354] Length = 223 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 80/211 (37%), Positives = 116/211 (54%), Gaps = 2/211 (0%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G+A + +L +ALTH S+ Y+RLEFLGDR+LGL I+ LF + +SA EG L+ Sbjct: 15 GFAARDEALWNEALTHGSLGEG--RDYQRLEFLGDRVLGLAIAEWLFENQNSASEGTLAQ 72 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 R N+LVS C++VAR + + +R+ R+D + ++I DV+ESL+ A + G E Sbjct: 73 RLNALVSKGACAKVARSIGVPDHLRLGRQAREDGGAQSSNILGDVMESLLGAQLREDGFE 132 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 A V W+ + K+ LQEWA PEY + RSGPDH RFTV V Sbjct: 133 SARALVRALWRDAVEGDAGRAKHPKSALQEWAAGNRRRPPEYALIDRSGPDHAARFTVRV 192 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + + A+ SK+ AE AA +++ G Sbjct: 193 SVKNVGDAEATANSKQEAETAAAKAFMEQYG 223 >gi|119713398|gb|ABL97460.1| ribonuclease III [uncultured marine bacterium HF130_81H07] Length = 220 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 8/225 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + LEK +GY+F + L KALTH S S + E EFLGD +L L+IS +L Sbjct: 1 MNK-DFKKLEKNLGYSFQKKETLVKALTHVSKSKE---NNEVFEFLGDSVLNLIISQILV 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG LS+ + LVS T +++A++L+L SFI +I + +E Sbjct: 57 EKFSMDDEGTLSLMRSKLVSRTTLNKIAKKLELDSFIV--KGDSLAGQETPENILGNSLE 114 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++ A+Y + G+E ++ + + + ++ + + Sbjct: 115 AIFGAVYKESGLEFIQKIIETTFAKEIELLREGNLK-NSKTLLQEYCQKNKFSLPTYNQI 173 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 ++ F V ++ + ++G S + AEQ AAA +LK+ G+ Sbjct: 174 EKKENIYPFIVTCKLDDSS-SEGFGKSLKLAEQDAAARLLKKIGV 217 >gi|166712833|ref|ZP_02244040.1| ribonuclease III [Xanthomonas oryzae pv. oryzicola BLS256] Length = 226 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 76/214 (35%), Positives = 106/214 (49%), Gaps = 6/214 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ +LL +AL H S ERLEFLGD I+ LL++ L+ + A EG L+ Sbjct: 12 IGHAFADPALLAQALRHRSAG---TPHNERLEFLGDGIVNLLVAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKPEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + +A A+G S+R AEQ AA V+ + Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222 >gi|323702685|ref|ZP_08114346.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574] gi|323532348|gb|EGB22226.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574] Length = 204 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 69/187 (36%), Positives = 90/187 (48%), Gaps = 2/187 (1%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +RLEFLGD +L LLIS L+ F EGEL+ + V + ++VAR LDL +R Sbjct: 3 HNQRLEFLGDAVLELLISEYLYQRFPDRTEGELTKMRAASVCEPSLAKVARGLDLGRCLR 62 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRD 156 + + SI AD E+L+ A+YLD G+E A FV + + RD Sbjct: 63 MGRGEERSGGRERPSILADAFEALLGAIYLDHGLEAARKFVLEQLNPIITDVVAGRLDRD 122 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 KTELQE Y + +GPDHD FT V G QG SK+ AEQ AA Sbjct: 123 YKTELQERLQQNSPDPVSYVIMKETGPDHDKVFTAGVIYRGQIIGQGSGHSKKEAEQQAA 182 Query: 217 AEVLKRE 223 + R Sbjct: 183 KDAFNRL 189 >gi|225075386|ref|ZP_03718585.1| hypothetical protein NEIFLAOT_00391 [Neisseria flavescens NRL30031/H210] gi|224953204|gb|EEG34413.1| hypothetical protein NEIFLAOT_00391 [Neisseria flavescens NRL30031/H210] Length = 239 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 11/229 (4%) Query: 1 MSALRYST-----LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55 M ++KR+GY F N LL++ALTH S + ER EF+GD IL + Sbjct: 1 MKPDLLKKQAHRSIQKRLGYEFRNMELLQQALTHRSY---NAKHNERFEFVGDSILNYSV 57 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + +LF+ F EGELS +LV+ +++A E+++ + + + K SI Sbjct: 58 ARMLFDAFPKLSEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSIL 117 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTP 173 AD +E++ AA+ D A V + +R ++ ++D+KT LQE A+ P Sbjct: 118 ADAMEAMFAAVSFDADFSAAEKVVRHLFAERVKRADLNIGKKDSKTALQEALQARRFALP 177 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 +Y++ ++ D F + ++ L S++ AEQ AA E L+ Sbjct: 178 KYRIEEQAEQTADAMFVISCDLGELGFICNARGSSRKVAEQKAACEALE 226 >gi|71051733|gb|AAH98796.1| Dicer1 protein [Rattus norvegicus] Length = 401 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 145 FENFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 204 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 205 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 264 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 265 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 324 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 325 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVELVGKGKFKGVGRSYRIAK 380 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 381 SAAARRALRSLK 392 >gi|314978880|gb|EFT22974.1| ribonuclease III [Propionibacterium acnes HL072PA2] gi|315089369|gb|EFT61345.1| ribonuclease III [Propionibacterium acnes HL072PA1] Length = 265 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 38 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + +AR+L + I++ + TSI AD E+L+ Sbjct: 97 PDKPEGQLAKLRSAVVSTVSLGLLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ S Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253 >gi|218195189|gb|EEC77616.1| hypothetical protein OsI_16596 [Oryza sativa Indica Group] Length = 1576 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 90/245 (36%), Gaps = 24/245 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ IGY F ++ LL +A H S S Y+RLEFLGD +L +I++ L+ Sbjct: 1128 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 1187 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110 + + K G+++ + V ++ + A E + + S+ S Sbjct: 1188 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 1247 Query: 111 ---------MTSIQADVVESLIAALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTE 160 D+VES I A+ LD G V + L + E Sbjct: 1248 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 1307 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219 L+E K G H V V I + + +AA + AA E Sbjct: 1308 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 1364 Query: 220 LKREG 224 L + Sbjct: 1365 LSKLK 1369 Score = 41.1 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPA 201 + A++ L E A + PE+K+ GP H +FT VVVEI G L Sbjct: 1480 YHGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLEC 1539 Query: 202 QGMDC-SKRAAEQVAAAEV---LKREG 224 K+AA++ AA LK+ G Sbjct: 1540 HSDGKLQKKAAQEHAAQGALWCLKQLG 1566 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 3/130 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + +ALT S ER E LGD L ++ F ++ EG+L+ R + +V+ Sbjct: 946 ILEALTTEKCLERI--SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNS 1003 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 +++ L +IR V + + I Sbjct: 1004 HLYELSIRKKLQVYIRDQQ-FEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNL 1062 Query: 143 WKQRALKSGK 152 R+ Sbjct: 1063 RCTRSHHWLH 1072 >gi|117620609|ref|YP_855343.1| ribonuclease III [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562016|gb|ABK38964.1| ribonuclease III [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 223 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 74/212 (34%), Positives = 110/212 (51%), Gaps = 6/212 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ + L+ R+G+ F ++ LL +ALTH S + ERLEFLGD IL L+I+ LF+ Sbjct: 1 MNIKMNRLQSRLGHVFQDQELLTRALTHRSAGSRH---NERLEFLGDSILSLVIADDLFH 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A EG+LS +LV +T +++ RE DL + + K SI AD VE+ Sbjct: 58 RFPQAAEGDLSRMRATLVREKTLAELGREFDLGDHLILGPGELKSGGFRRESILADTVEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A+YLD +E T + ++ R + ++D KT LQE P Y VT Sbjct: 118 VIGAVYLDTNLETVRTLLLGWYASRLDEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVTN 177 Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ FTV ++ GL P G+ S+R Sbjct: 178 VKGEAHNQEFTVQCDVEGLDGPLVGVGTSRRK 209 >gi|312140459|ref|YP_004007795.1| ribonuclease iii [Rhodococcus equi 103S] gi|325675924|ref|ZP_08155607.1| ribonuclease III [Rhodococcus equi ATCC 33707] gi|311889798|emb|CBH49115.1| ribonuclease III [Rhodococcus equi 103S] gi|325553162|gb|EGD22841.1| ribonuclease III [Rhodococcus equi ATCC 33707] Length = 256 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 93/209 (44%), Gaps = 6/209 (2%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL ALTH S ++ + + ERLEFLGD +LGL I+ L+ EGEL+ S+ Sbjct: 31 DLLTLALTHRSYAYEHGGLPTNERLEFLGDSVLGLTITERLYTAHPEKSEGELAKIRASI 90 Query: 79 VSAETCSQVARELDLASFIRVSSDL---RKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 V+ ++VAR L SI AD +ESL+ A++L+ GI+ A Sbjct: 91 VNMHALAEVARGLGPGGLGAHLLLGKGEEMTGGRDKPSILADGMESLLGAIHLEHGIDTA 150 Query: 136 GTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 V + ++ K + A+ G+ +GPDHD FT V Sbjct: 151 RRVVLDLFADLLSRAPKLGAGLDWKTSLQELTAERGIGVPSYEITATGPDHDKEFTATVV 210 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + G A G+ SK+ AEQ AA+ Sbjct: 211 VGGDAFGVGVGRSKKEAEQKAASTAWSAL 239 >gi|314954310|gb|EFS98716.1| ribonuclease III [Propionibacterium acnes HL027PA1] Length = 265 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G + LL+ ALTH S + + ERLEFLGD IL + ++ L+ F Sbjct: 38 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ +++VS + Q+AR+L + I++ + TSI AD E+L+ Sbjct: 97 PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+ L G+ V + ++ + D KT LQE+ P Y++ Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVGF- 215 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GPDH+ R+ + G A +K+ AEQ AA Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253 >gi|320108696|ref|YP_004184286.1| ribonuclease III [Terriglobus saanensis SP1PR4] gi|319927217|gb|ADV84292.1| ribonuclease III [Terriglobus saanensis SP1PR4] Length = 252 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 107/243 (44%), Gaps = 24/243 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57 M+ + L +R+GY F + LL+ ALTHSS++ ES ER+EF+GD ++GL+++ Sbjct: 1 MAKAAKTGLAERLGYKFRDAKLLDLALTHSSLAFEAGTASESNERMEFVGDAVVGLIVAE 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF F S EGEL+ LVS + +V L L ++++ + ++ A+ Sbjct: 61 SLFQRFPSLGEGELTRMRALLVSRKHLGEVGARLGLGEYLQLGRGEEQSGGRKKPALMAN 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP---- 173 +E+++AA+YLDGG+ V++ + + +T Sbjct: 121 AMEAVLAAVYLDGGLSAVQEIVEREVVLPKMPELERAAGEQTHFGGVVGDYKSALQELLQ 180 Query: 174 ---------EYKVTFRSGPDHDPRFTVVVEI--------SGLAPAQGMDCSKRAAEQVAA 216 Y SGPDH F V + + A G +K+AA+Q AA Sbjct: 181 ARGVGSAVARYVTAEESGPDHRKHFRVELMLVEGDAASKKETLLAVGEGPTKKAAQQKAA 240 Query: 217 AEV 219 Sbjct: 241 EIA 243 >gi|251764670|sp|A7LFZ6|DCL4_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 4; AltName: Full=Dicer-like protein 4; Short=OsDCL4; AltName: Full=Protein SHOOT ORGANIZATION 1 gi|152926631|gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group] Length = 1657 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 90/245 (36%), Gaps = 24/245 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ IGY F ++ LL +A H S S Y+RLEFLGD +L +I++ L+ Sbjct: 1209 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 1268 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110 + + K G+++ + V ++ + A E + + S+ S Sbjct: 1269 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 1328 Query: 111 ---------MTSIQADVVESLIAALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTE 160 D+VES I A+ LD G V + L + E Sbjct: 1329 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 1388 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219 L+E K G H V V I + + +AA + AA E Sbjct: 1389 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 1445 Query: 220 LKREG 224 L + Sbjct: 1446 LSKLK 1450 Score = 41.1 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPA 201 + A++ L E A + PE+K+ GP H +FT VVVEI G L Sbjct: 1561 YHGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLEC 1620 Query: 202 QGMDC-SKRAAEQVAAAEV---LKREG 224 K+AA++ AA LK+ G Sbjct: 1621 HSDGKLQKKAAQEHAAQGALWCLKQLG 1647 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 3/130 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + +ALT S ER E LGD L ++ F ++ EG+L+ R + +V+ Sbjct: 1027 ILEALTTEKCLERI--SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNS 1084 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 +++ L +IR V + + I Sbjct: 1085 HLYELSIRKKLQVYIRDQQ-FEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNL 1143 Query: 143 WKQRALKSGK 152 R+ Sbjct: 1144 RCTRSHHWLH 1153 >gi|146298900|ref|YP_001193491.1| ribonuclease III [Flavobacterium johnsoniae UW101] gi|146153318|gb|ABQ04172.1| Ribonuclease III [Flavobacterium johnsoniae UW101] Length = 246 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 6/222 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIST 57 + + T++K +G+ N +KA TH S + + +YERLEFLGD +L +I+ Sbjct: 16 DGIFFDTIQKILGFQPINIEFYKKAFTHRSSNKLDEAGHPINYERLEFLGDAMLSAVIAA 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LFN + EG L+ + +VS E +++ ++L+L F+ ++ + +I Sbjct: 76 HLFNKAPNGDEGYLTKMRSKIVSREHLNELGKDLNLVRFVESKVPVQHFGENIHGNIFES 135 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ++ ++ V + A GK ++ K Y + Sbjct: 136 LIGAIYLDKGYSYCERFIQKRVITPYVDIARLEGKVISYKSLVIEWCQKEKR--IFHYDI 193 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +G D F V + I A+ SK+ AE+ A+ Sbjct: 194 FEDNGIDGQRLFGVKLSIDDKVVARARATSKKKAEEKASQRA 235 >gi|32488296|emb|CAE03362.1| OSJNBb0065L13.5 [Oryza sativa Japonica Group] gi|116311061|emb|CAH67991.1| OSIGBa0157K09-H0214G12.2 [Oryza sativa Indica Group] Length = 1604 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 90/245 (36%), Gaps = 24/245 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ IGY F ++ LL +A H S S Y+RLEFLGD +L +I++ L+ Sbjct: 1156 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 1215 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110 + + K G+++ + V ++ + A E + + S+ S Sbjct: 1216 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 1275 Query: 111 ---------MTSIQADVVESLIAALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTE 160 D+VES I A+ LD G V + L + E Sbjct: 1276 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 1335 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219 L+E K G H V V I + + +AA + AA E Sbjct: 1336 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 1392 Query: 220 LKREG 224 L + Sbjct: 1393 LSKLK 1397 Score = 41.1 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPA 201 + A++ L E A + PE+K+ GP H +FT VVVEI G L Sbjct: 1508 YHGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLEC 1567 Query: 202 QGMDC-SKRAAEQVAAAEV---LKREG 224 K+AA++ AA LK+ G Sbjct: 1568 HSDGKLQKKAAQEHAAQGALWCLKQLG 1594 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 3/130 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + +ALT S ER E LGD L ++ F ++ EG+L+ R + +V+ Sbjct: 974 ILEALTTEKCLERI--SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNS 1031 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 +++ L +IR V + + I Sbjct: 1032 HLYELSIRKKLQVYIRDQQ-FEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNL 1090 Query: 143 WKQRALKSGK 152 R+ Sbjct: 1091 RCTRSHHWLH 1100 >gi|115459356|ref|NP_001053278.1| Os04g0509300 [Oryza sativa Japonica Group] gi|113564849|dbj|BAF15192.1| Os04g0509300 [Oryza sativa Japonica Group] Length = 1090 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 90/245 (36%), Gaps = 24/245 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ IGY F ++ LL +A H S S Y+RLEFLGD +L +I++ L+ Sbjct: 642 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 701 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110 + + K G+++ + V ++ + A E + + S+ S Sbjct: 702 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 761 Query: 111 ---------MTSIQADVVESLIAALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTE 160 D+VES I A+ LD G V + L + E Sbjct: 762 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 821 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219 L+E K G H V V I + + +AA + AA E Sbjct: 822 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 878 Query: 220 LKREG 224 L + Sbjct: 879 LSKLK 883 Score = 41.1 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPA 201 + A++ L E A + PE+K+ GP H +FT VVVEI G L Sbjct: 994 YHGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLEC 1053 Query: 202 QGMDC-SKRAAEQVAAAEV---LKREG 224 K+AA++ AA LK+ G Sbjct: 1054 HSDGKLQKKAAQEHAAQGALWCLKQLG 1080 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 3/130 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + +ALT S ER E LGD L ++ F ++ EG+L+ R + +V+ Sbjct: 460 ILEALTTEKCLERI--SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNS 517 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 +++ L +IR V + + I Sbjct: 518 HLYELSIRKKLQVYIRDQQ-FEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNL 576 Query: 143 WKQRALKSGK 152 R+ Sbjct: 577 RCTRSHHWLH 586 >gi|294626963|ref|ZP_06705554.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664535|ref|ZP_06729880.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598823|gb|EFF42969.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605697|gb|EFF49003.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 226 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 106/214 (49%), Gaps = 6/214 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ +LL +AL H S ERLEFLGD I+ LLI+ L+ + A EG L+ Sbjct: 12 IGHAFADPALLAQALRHRSAG---TPHNERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYVLISESGDEHAKQFH 188 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + +A A+G S+R AEQ AA V+ + Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222 >gi|215694849|dbj|BAG90040.1| unnamed protein product [Oryza sativa Japonica Group] Length = 1058 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 90/245 (36%), Gaps = 24/245 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ IGY F ++ LL +A H S S Y+RLEFLGD +L +I++ L+ Sbjct: 610 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 669 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110 + + K G+++ + V ++ + A E + + S+ S Sbjct: 670 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 729 Query: 111 ---------MTSIQADVVESLIAALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTE 160 D+VES I A+ LD G V + L + E Sbjct: 730 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 789 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219 L+E K G H V V I + + +AA + AA E Sbjct: 790 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 846 Query: 220 LKREG 224 L + Sbjct: 847 LSKLK 851 Score = 41.1 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPA 201 + A++ L E A + PE+K+ GP H +FT VVVEI G L Sbjct: 962 YHGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLEC 1021 Query: 202 QGMDC-SKRAAEQVAAAEV---LKREG 224 K+AA++ AA LK+ G Sbjct: 1022 HSDGKLQKKAAQEHAAQGALWCLKQLG 1048 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 3/130 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + +ALT S ER E LGD L ++ F ++ EG+L+ R + +V+ Sbjct: 428 ILEALTTEKCLERI--SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNS 485 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 +++ L +IR V + + I Sbjct: 486 HLYELSIRKKLQVYIRDQQ-FEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNL 544 Query: 143 WKQRALKSGK 152 R+ Sbjct: 545 RCTRSHHWLH 554 >gi|157279689|dbj|BAF80150.1| SHOOT ORGANIZATION1 [Oryza sativa Japonica Group] Length = 1631 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 90/245 (36%), Gaps = 24/245 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ IGY F ++ LL +A H S S Y+RLEFLGD +L +I++ L+ Sbjct: 1183 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 1242 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110 + + K G+++ + V ++ + A E + + S+ S Sbjct: 1243 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 1302 Query: 111 ---------MTSIQADVVESLIAALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTE 160 D+VES I A+ LD G V + L + E Sbjct: 1303 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 1362 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219 L+E K G H V V I + + +AA + AA E Sbjct: 1363 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 1419 Query: 220 LKREG 224 L + Sbjct: 1420 LSKLK 1424 Score = 41.1 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPA 201 + A++ L E A + PE+K+ GP H +FT VVVEI G L Sbjct: 1535 YHGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLEC 1594 Query: 202 QGMDC-SKRAAEQVAAAEV---LKREG 224 K+AA++ AA LK+ G Sbjct: 1595 HSDGKLQKKAAQEHAAQGALWCLKQLG 1621 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 3/130 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + +ALT S ER E LGD L ++ F ++ EG+L+ R + +V+ Sbjct: 1001 ILEALTTEKCLERI--SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNS 1058 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 +++ L +IR V + + I Sbjct: 1059 HLYELSIRKKLQVYIRDQQ-FEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNL 1117 Query: 143 WKQRALKSGK 152 R+ Sbjct: 1118 RCTRSHHWLH 1127 >gi|154247804|ref|YP_001418762.1| ribonuclease III [Xanthobacter autotrophicus Py2] gi|154161889|gb|ABS69105.1| Ribonuclease III [Xanthobacter autotrophicus Py2] Length = 236 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 92/212 (43%), Positives = 130/212 (61%), Gaps = 5/212 (2%) Query: 1 MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLI 55 M+A+ +++E+RIGY F +RS+LE AL+H S SY+R+EFLGD +LG ++ Sbjct: 1 MNAVGSDLASVEERIGYRFRDRSILELALSHISAVKGEAPRLRSYQRMEFLGDHVLGSVV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S +L+ F +EGELS R LV E C++VA+++DL FIR+ + +I Sbjct: 61 SHMLYLAFPEGEEGELSRRLAELVREEACAEVAQDMDLGPFIRLGPGESQSGAHKRRAIL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 ADV E ++AA++LDGG E A V+++W+ R + RDAKT LQEWA A+ P Y Sbjct: 121 ADVAEGVVAAVFLDGGYEAAHQVVERFWRPRLETPRRPLRDAKTVLQEWAQARGLPPPSY 180 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + RSGPDH PRFTV V++ GLA Q S Sbjct: 181 REVTRSGPDHAPRFTVAVDLPGLASEQADGAS 212 >gi|325926994|ref|ZP_08188269.1| RNAse III [Xanthomonas perforans 91-118] gi|325928522|ref|ZP_08189710.1| RNAse III [Xanthomonas perforans 91-118] gi|325541061|gb|EGD12615.1| RNAse III [Xanthomonas perforans 91-118] gi|325542653|gb|EGD14120.1| RNAse III [Xanthomonas perforans 91-118] Length = 226 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 106/214 (49%), Gaps = 6/214 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ +LL +AL H S ERLEFLGD I+ LLI+ L+ + A EG L+ Sbjct: 12 IGHAFADPALLAQALRHRSAG---TPHNERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFH 188 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + +A A+G S+R AEQ AA V+ + Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222 >gi|289711908|gb|ACC62400.2| ribonuclease III [Penaeus monodon] Length = 2473 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 84/247 (34%), Gaps = 28/247 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E++IGY F +RS L +A TH+S + Y+RLEFLGD +L LI+ L+ Sbjct: 2217 YQVFEEKIGYTFRDRSYLLQAFTHASYYKNRLTGCYQRLEFLGDAVLDYLITRHLYEDKR 2276 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A + D + R S V +Q + + Sbjct: 2277 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINE 2336 Query: 125 ALYLDGGIEVAGTFVDKYWK------------------------QRALKSGKFRRDAKTE 160 Y E + K + R + Sbjct: 2337 EYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCREIEQFS 2396 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDH---DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + T + G D + V VEI G G+ + R A+ AA Sbjct: 2397 GVVPKSPIRELLEMEPETAKFGKPERLVDGKVRVSVEIFGKGSFSGVGRNYRIAKSTAAK 2456 Query: 218 EVLKREG 224 L+ Sbjct: 2457 RALRHLK 2463 Score = 41.8 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + + + S++ +ALT S+ + + ERLE +GD L I+T L+ + EG+ Sbjct: 1953 DLLNHPGPSPSVILQALTMSNANDGV--NLERLETIGDSFLKYAITTFLYCTYPQRHEGK 2010 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 LS + VS ++ + L + + D Sbjct: 2011 LSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNW 2048 >gi|300361933|ref|ZP_07058110.1| ribonuclease III [Lactobacillus gasseri JV-V03] gi|300354552|gb|EFJ70423.1| ribonuclease III [Lactobacillus gasseri JV-V03] Length = 226 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 4/212 (1%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57 M ++ + L+++ G F N +LLE A THSS ++ + ++ YE+LEFLGD +L L +S Sbjct: 1 MVSVAFKNNLKEKYGIKFNNENLLEDAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ HF EGEL+ +++V E S+ A E + I + K ++ D Sbjct: 61 YLYRHFPRLNEGELTRMRSNIVRTEGFSEFAIECGFPAEINLGKGEEKAGARKRKTLLED 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 V E+ AL+LD G+ F+ + + G Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQ 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 P F V + ++ ++G +K+ Sbjct: 181 VIAEDES-KPYFKVQLLVNDKKISEGQGRNKK 211 >gi|95930677|ref|ZP_01313411.1| Ribonuclease III [Desulfuromonas acetoxidans DSM 684] gi|95133329|gb|EAT14994.1| Ribonuclease III [Desulfuromonas acetoxidans DSM 684] Length = 244 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 106/207 (51%), Gaps = 5/207 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFN 61 S E+R+GY F +R L+ AL H S ++ ER EFLGD +L L+++ LF Sbjct: 13 LSQFEERLGYRFTDRHYLQTALIHKSYANEQLRDPAACNERQEFLGDAVLDLVMADYLFC 72 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EGELS + LVSA ++VAR L+L +++ R+ ++ AD +E+ Sbjct: 73 TYPQLPEGELSRIRSELVSARALAKVARRLNLGPCLKLGRGERRSGGQDKDNLLADALEA 132 Query: 122 LIAALYLDGGIEVAGTFV-DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A++LD G +VA + + + + D KT QE A A+FG PEY++ Sbjct: 133 VFGAVFLDAGWDVARDVLGRMFEGTAVQAARRKSLDYKTRFQELAQARFGAAPEYELVAT 192 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207 GPDH +TV+V G QG S Sbjct: 193 EGPDHQREYTVIVSCEGRHLGQGSGGS 219 >gi|225351172|ref|ZP_03742195.1| hypothetical protein BIFPSEUDO_02762 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158628|gb|EEG71870.1| hypothetical protein BIFPSEUDO_02762 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 275 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 7/227 (3%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLF 60 + + L + +G LL +ALTH S SH ++YERLEFLGD +L L+ + L+ Sbjct: 15 EMTANALLEALGTTLE-PDLLVEALTHRSFSHENPGAKNYERLEFLGDAVLELVSTETLY 73 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 EG+L+ VS E+ S++AR +L+ +I + + +SI D+V Sbjct: 74 KAHPDMNEGQLAKMRAKAVSEESLSKIAREKLNAGPYILLGHGESDQGGADKSSILCDIV 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ESLI A ++ GI+ A V + A + + G Sbjct: 134 ESLIGATFIQHGIDEARRVVHHLVDETLAEVATEGPALDWKTSLTVKAHGMGFGEPRYQM 193 Query: 179 FRSGPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP++ FT V + + G SKR A+ AA E K Sbjct: 194 SVSGPEYAQVFTANVMLGESDEIISTGTGTSKRKAQLAAAEEGWKAL 240 >gi|212716732|ref|ZP_03324860.1| hypothetical protein BIFCAT_01669 [Bifidobacterium catenulatum DSM 16992] gi|212660436|gb|EEB21011.1| hypothetical protein BIFCAT_01669 [Bifidobacterium catenulatum DSM 16992] Length = 278 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 7/227 (3%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLF 60 + + L + +G LL +ALTH S SH ++YERLEFLGD +L L+ + L+ Sbjct: 15 EMTANALLEALGTTLE-PDLLVEALTHRSFSHENPGAKNYERLEFLGDAVLELVSTETLY 73 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 EG+L+ VS E+ S++AR +L+ +I + + +SI D+V Sbjct: 74 KAHPDMNEGQLAKMRAKAVSEESLSKIAREKLNAGPYILLGHGESDQGGADKSSILCDIV 133 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ESLI A ++ GI+ A V + A + + G Sbjct: 134 ESLIGATFIQHGIDEARRVVHHLVDETLAEVATEGPALDWKTSLTVKAHGMGFGEPRYQM 193 Query: 179 FRSGPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP++ FT V + + G SKR A+ AA E K Sbjct: 194 SVSGPEYAQVFTANVMLGESDEIISTGTGTSKRKAQLAAAEEGWKAL 240 >gi|21230730|ref|NP_636647.1| ribonuclease III [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769274|ref|YP_244036.1| ribonuclease III [Xanthomonas campestris pv. campestris str. 8004] gi|188992425|ref|YP_001904435.1| ribonuclease III [Xanthomonas campestris pv. campestris str. B100] gi|24212269|sp|Q8PB52|RNC_XANCP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|81304767|sp|Q4USF7|RNC_XANC8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|21112323|gb|AAM40571.1| ribonuclease III [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574606|gb|AAY50016.1| ribonuclease III [Xanthomonas campestris pv. campestris str. 8004] gi|167734185|emb|CAP52393.1| Ribonuclease III [Xanthomonas campestris pv. campestris] Length = 226 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 110/214 (51%), Gaps = 6/214 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ LL +AL H S ERLEFLGD I+ LLI+ L+ + A EG L+ Sbjct: 12 IGHAFADPGLLAQALRHRSAG---TPHNERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E V +++ AL GK +D KT LQEW A+ P+Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEPSLAALPVGKAEKDPKTRLQEWLQARQLPLPQYALISESGDEHAKQFH 188 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + A A+G S+R AEQ AAA V+ + Sbjct: 189 VACILEQPAARAEGQGTSRRLAEQQAAATVIAQL 222 >gi|126726095|ref|ZP_01741937.1| ribonuclease III [Rhodobacterales bacterium HTCC2150] gi|126705299|gb|EBA04390.1| ribonuclease III [Rhodobacterales bacterium HTCC2150] Length = 228 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 83/209 (39%), Positives = 118/209 (56%), Gaps = 1/209 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M A RIG+ F+ LL +A+TH+SIS + + +RLEFLGDRILGL+++ L Sbjct: 1 MKVAADLVAFSARIGHEFSKPELLVEAVTHASISSANRSDNQRLEFLGDRILGLVMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 N SA EG L+ RFN+LV ETC+ VARE+DL + +++ ++ D + Sbjct: 61 LNADTSANEGTLAPRFNALVRKETCADVAREIDLGAVLKLGRSEMISGGRRKLALLGDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+YLD G E A F+ + W +R + RD K+ LQEWA A+ P YK+ Sbjct: 121 EAVIAAVYLDAGFEAARDFILRSWGERINAVDEDARDPKSSLQEWAQARKMPPPVYKLLR 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 R G DH P FT+ + A+ SK Sbjct: 181 REGADHAPMFTIAAILDSGQQAEAKAPSK 209 >gi|269957060|ref|YP_003326849.1| ribonuclease III [Xylanimonas cellulosilytica DSM 15894] gi|269305741|gb|ACZ31291.1| ribonuclease III [Xylanimonas cellulosilytica DSM 15894] Length = 239 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 101/221 (45%), Gaps = 7/221 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + L +++G + LL ALTH S +H ERLEFLGD +LG++++ LF Sbjct: 13 TALLEKLGV-PLDPELLVLALTHRSFAHEAGGIPHNERLEFLGDSVLGVVVTEALFRRHP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ + VS + + VAR L+L S++ + R+ SI +D VE+LI Sbjct: 72 DVSEGELAKMRAATVSQRSLAAVARRLELGSYVLLGKGERRTRGFDKDSILSDTVEALIG 131 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A Y+ G+E A V + + D KT LQE + P G Sbjct: 132 ATYISHGLEAARELVHRLVDDTLDAAADLGAGLDWKTSLQEACAERGYPAP-TYEVDAEG 190 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P+H F V +G G +K+ AEQ AA + + Sbjct: 191 PEHARAFHAQVT-AGPVLGLGHGTAKKHAEQEAAEQAYRAL 230 >gi|308494532|ref|XP_003109455.1| CRE-DRSH-1 protein [Caenorhabditis remanei] gi|308246868|gb|EFO90820.1| CRE-DRSH-1 protein [Caenorhabditis remanei] Length = 1073 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 13/228 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63 + LE + F N LL KA T ++ H+ + +RLE+LGD +L L++S LF + Sbjct: 821 FHKLENILNIKFNNIRLLAKAFTRRNVPHNDLTKGHNQRLEWLGDSVLQLVVSDYLFRRY 880 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG +S+ SLVS +T S V +L F+ + +AD+VE+ I Sbjct: 881 PLHHEGHMSLLRTSLVSNQTQSVVCDDLGFLEFVVKPPHKTPE---LKMKDKADLVEAFI 937 Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA------HAKFGVTPEY 175 ALY+D GIE +F+ + R + + DAK+ LQ+W P+Y Sbjct: 938 GALYVDRGIEHCRSFIRIVFCPRLKHFINSEQWNDAKSHLQQWCLAIRDAQNPNPAMPDY 997 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ GP ++ F V V G A + + AE AA L Sbjct: 998 RILSIEGPTNNRIFKVGVYFRGKRLASAAESNVHKAELKAAEIALASL 1045 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 48/206 (23%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------------------------ 38 S E+ I Y F +R ++E AL HSS Y Sbjct: 593 NFSLSVFEEIIEYQFNDRKVIELALIHSSFRSHYGTPPDHIKNIISNCGYRRKYGSEEKR 652 Query: 39 ------------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 ERLE+LGD ++ L++S L+ EG L+ Sbjct: 653 EKKKGIVSLFNIMGGETEGGEPILHNERLEYLGDAVVELIVSHHLYFMLPHHFEGGLATY 712 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 +LV + +A+ + ++ + + A+ E+++AA+YLDGG+ Sbjct: 713 RTALVQNRNLADLAKNCRIDEMLQYAHGADLINEAEWKHALANAFEAVVAAVYLDGGLGA 772 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTE 160 K A K Sbjct: 773 CDRLFSKAMYGSAPNLKKVWDHINEH 798 >gi|284799722|ref|ZP_05984688.2| ribonuclease III [Neisseria subflava NJ9703] gi|284797336|gb|EFC52683.1| ribonuclease III [Neisseria subflava NJ9703] Length = 296 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 65/217 (29%), Positives = 110/217 (50%), Gaps = 6/217 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 ++KR+GY F N LL++ALTH S + ER EF+GD IL ++ +LF+ F Sbjct: 13 AIQKRLGYEFRNMELLQQALTHRSY---NAKHNERFEFVGDSILNYSVARMLFDAFPKLS 69 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EGELS +LV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 70 EGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAVS 129 Query: 128 LDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D A V + +R ++ ++D+KT LQE A+ P+Y++ ++ Sbjct: 130 FDADFSAAEKVVRHLFAERVKRADLNIGKKDSKTALQEALQARRFALPKYRIEEQAEQTA 189 Query: 186 DPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 D F + ++ L S++ AEQ AA E L+ Sbjct: 190 DAMFVISCDLGELGFICNARGSSRKVAEQKAACEALE 226 >gi|84515163|ref|ZP_01002526.1| ribonuclease III [Loktanella vestfoldensis SKA53] gi|84511322|gb|EAQ07776.1| ribonuclease III [Loktanella vestfoldensis SKA53] Length = 226 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 83/210 (39%), Positives = 120/210 (57%), Gaps = 1/210 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + ++ +R+GY+F LL +++THSS+ +++ +RLEFLGDR+LGL+++ L Sbjct: 1 MKLSADLASFSQRLGYSFVRPDLLVRSVTHSSMVSIHRDDNQRLEFLGDRVLGLVMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 SA EG L+ R+N+LV ETC+ VARE+DL + I++ K ++ AD + Sbjct: 61 LKADPSAPEGLLAPRYNALVRRETCADVAREVDLGAVIKLGRSEMKSGGRRKEALLADAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+Y DGG + A V W R RDAKT LQEWA A+ P Y T Sbjct: 121 EAVIAAIYQDGGFDAARKVVLHLWGARITNVADDARDAKTALQEWAQARGEAPPSYTETA 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 R+GPDH P FT+ V + SKR Sbjct: 181 RTGPDHQPAFTIAVTLESGQTETATAGSKR 210 >gi|296453545|ref|YP_003660688.1| ribonuclease III [Bifidobacterium longum subsp. longum JDM301] gi|296182976|gb|ADG99857.1| Ribonuclease III [Bifidobacterium longum subsp. longum JDM301] Length = 242 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 7/223 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + L + +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF Sbjct: 13 NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS + S +A+ +L + +I + + + SI D+VESLI Sbjct: 72 DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGETEQGGAEKNSILCDIVESLI 131 Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +L+ GI+ A + + A + + G SG Sbjct: 132 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKDEPVYHMEVSG 191 Query: 183 PDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P++ FT V + +G G SKR A+ AA K Sbjct: 192 PEYAQIFTARVSLGENGDIIGIGKGSSKRKAQLAAAEAGWKSL 234 >gi|119717505|ref|YP_924470.1| ribonuclease III [Nocardioides sp. JS614] gi|119538166|gb|ABL82783.1| RNAse III [Nocardioides sp. JS614] Length = 276 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 3/208 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 Y+ L +G + LLE+ALTH S ++ + ERLEFLGD +LG++++ L+ Sbjct: 34 NYAELRAALGDPTLDPELLERALTHRSFAYENGGLPTNERLEFLGDSVLGVVVTETLYLK 93 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG L+ ++V+A ++V R + + +++ SI +D VE++ Sbjct: 94 HPDLSEGRLAKLRAAVVNARALAEVGRRIGVGEHVKLGRGEESTGGRHKASILSDTVEAV 153 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRS 181 I A++L GG + V + + + + A+ G+ V Sbjct: 154 IGAVHLSGGFTTSAVVVHRLFDPLIEAASALGAGLDWKTSLQELSAEHGLGVPEYVIEDD 213 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDH FT V + G+ SK+ Sbjct: 214 GPDHMKTFTAQVRVGEGLYGNGVGRSKK 241 >gi|155371010|ref|YP_001426544.1| hypothetical protein ATCV1_Z063L [Acanthocystis turfacea Chlorella virus 1] gi|155124330|gb|ABT16197.1| hypothetical protein ATCV1_Z063L [Acanthocystis turfacea Chlorella virus 1] Length = 268 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 88/221 (39%), Gaps = 5/221 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E IG + +L A S + E++ERLEFLGD +LG LI+ L++ F Sbjct: 45 EEIEGLIGMPVCDFNLYVTAF---SYNPLEENGETFERLEFLGDSVLGFLIARYLYDVFP 101 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ VS + S++A +L L FI +S D E+LI Sbjct: 102 GKNEGVLTRLRVKFVSGKLLSKLAHQLGLHEFIIMSQKGLYRCWHTNPKTLEDAFEALIG 161 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLD GI A F+ + + + VT Sbjct: 162 AIYLDLGINAARQFLMSVLTKHVNIYELMIDANHKDRLVKHCRVLNLAKPTFVTTFERGG 221 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + F V I + +G +++ AEQ AA L R GI Sbjct: 222 TNSMFVVEARIDNVPHGEGTGTTRKDAEQAAARTALLRLGI 262 >gi|308271416|emb|CBX28024.1| Ribonuclease 3 [uncultured Desulfobacterium sp.] Length = 220 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 7/205 (3%) Query: 21 SLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + L ++L HSS + + ERLEFLGD +L L I ++ N F EG+LS + Sbjct: 2 NFLVESLRHSSFVNEQSDTQIRDNERLEFLGDAVLNLAIGHIIINRFPELDEGDLSRVRS 61 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +LV+ ++VAR LDL S+I++ SI A+ E+++AA+YLDGG + A Sbjct: 62 NLVNELQVAEVARSLDLGSYIQLGKGEFLTNGRNKNSILANTFEAVVAAIYLDGGYDNAF 121 Query: 137 TFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 ++K + SGK D K+++QE + P Y V SGPDHD F V + Sbjct: 122 RIIEKIYLPILKLSGKSAAAYDFKSKVQELVQTGQEIKPAYNVVEESGPDHDKIFKVELT 181 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEV 219 I+ L G SK+ AEQ AA++ Sbjct: 182 INDLQ-TVGYGKSKKLAEQDAASKA 205 >gi|239622484|ref|ZP_04665515.1| ribonuclease III [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514481|gb|EEQ54348.1| ribonuclease III [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 272 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 7/223 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + L + +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF Sbjct: 43 NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 101 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS + S +A+ +L + +I + + + SI D+VESLI Sbjct: 102 DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 161 Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +L+ GI+ A + + A + + G SG Sbjct: 162 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHMEVSG 221 Query: 183 PDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P++ FT V + +G G SKR A+ AA K Sbjct: 222 PEYAQIFTARVSLGENGDIIGIGKGSSKRKAQLAAAEAGWKSL 264 >gi|23464896|ref|NP_695499.1| ribonuclease III [Bifidobacterium longum NCC2705] gi|23325487|gb|AAN24135.1| ribonuclease III [Bifidobacterium longum NCC2705] Length = 277 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 7/223 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + L + +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF Sbjct: 48 NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 106 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS + S +A+ +L + +I + + + SI D+VESLI Sbjct: 107 DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 166 Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +L+ GI+ A + + A + + G SG Sbjct: 167 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHMEVSG 226 Query: 183 PDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P++ FT V + +G G SKR A+ AA K Sbjct: 227 PEYAQIFTARVSLGENGDIIGIGKGSSKRKAQLAAAEAGWKSL 269 >gi|46190765|ref|ZP_00121069.2| COG0571: dsRNA-specific ribonuclease [Bifidobacterium longum DJO10A] gi|189439904|ref|YP_001954985.1| ribonuclease III [Bifidobacterium longum DJO10A] gi|312133320|ref|YP_004000659.1| rnc [Bifidobacterium longum subsp. longum BBMN68] gi|317482014|ref|ZP_07941039.1| ribonuclease III [Bifidobacterium sp. 12_1_47BFAA] gi|322688500|ref|YP_004208234.1| ribonuclease III [Bifidobacterium longum subsp. infantis 157F] gi|322690510|ref|YP_004220080.1| ribonuclease III [Bifidobacterium longum subsp. longum JCM 1217] gi|90101613|sp|Q8G7H1|RNC_BIFLO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189428339|gb|ACD98487.1| dsRNA-specific ribonuclease [Bifidobacterium longum DJO10A] gi|291517392|emb|CBK71008.1| RNAse III [Bifidobacterium longum subsp. longum F8] gi|311772536|gb|ADQ02024.1| Rnc [Bifidobacterium longum subsp. longum BBMN68] gi|316916581|gb|EFV37978.1| ribonuclease III [Bifidobacterium sp. 12_1_47BFAA] gi|320455366|dbj|BAJ65988.1| ribonuclease III [Bifidobacterium longum subsp. longum JCM 1217] gi|320459836|dbj|BAJ70456.1| ribonuclease III [Bifidobacterium longum subsp. infantis 157F] Length = 242 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 7/223 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + L + +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF Sbjct: 13 NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS + S +A+ +L + +I + + + SI D+VESLI Sbjct: 72 DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 131 Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +L+ GI+ A + + A + + G SG Sbjct: 132 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHMEVSG 191 Query: 183 PDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P++ FT V + +G G SKR A+ AA K Sbjct: 192 PEYAQIFTARVSLGENGDIIGIGKGSSKRKAQLAAAEAGWKSL 234 >gi|239617283|ref|YP_002940605.1| ribonuclease III [Kosmotoga olearia TBF 19.5.1] gi|239506114|gb|ACR79601.1| ribonuclease III [Kosmotoga olearia TBF 19.5.1] Length = 249 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 70/213 (32%), Positives = 105/213 (49%), Gaps = 9/213 (4%) Query: 19 NRSLLEKALTHSSISHS------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 + + KAL HSS ++ ES ERLEFLGD +L L ++ LL+ +D EG +S Sbjct: 20 DTEWIFKALCHSSYANEVVRKGMNVESNERLEFLGDAVLALSLADLLYREYDV-DEGVMS 78 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + S + ++VAR +++ ++ + K SI AD E+++ ALYL G Sbjct: 79 KTRAVVASEKVLAEVARNMNIGEYLLLGKGELKTGGRGRDSILADAFEAILGALYLSEGF 138 Query: 133 EVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E+A FV + K + + D KT LQE GV PEY G + F Sbjct: 139 EIARNFVKEKLGIYIEKALNKELVLDYKTTLQELTQGNLGVRPEYSYIENIGTPQNKLFH 198 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V V ++G A A G +K+AAEQ AA + ++ Sbjct: 199 VEVRVNGKALAVGYGKTKKAAEQDAARKAYEKL 231 >gi|15838837|ref|NP_299525.1| ribonuclease III [Xylella fastidiosa 9a5c] gi|9107400|gb|AAF85045.1|AE004037_6 ribonuclease III [Xylella fastidiosa 9a5c] Length = 212 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 74/210 (35%), Positives = 105/210 (50%), Gaps = 6/210 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + SLL +AL H S ERLEFLGD ++ LLI+ LF + A EG L+ + Sbjct: 2 FTDPSLLLQALRHCSAG---TPHNERLEFLGDSVVNLLIAEALFQRWPRADEGALTRARS 58 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 LV + + +AR + L + + K SI AD VE++IAA+YLD + Sbjct: 59 ELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVEAVIAAIYLDADLATCR 118 Query: 137 TFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 T V +++ AL GK +D KT LQEW A+ P Y++ F SG H F V Sbjct: 119 TVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELIFESGDPHTKHFRVSCT 178 Query: 195 ISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 + L +G S+R AEQ AA+ + + Sbjct: 179 LGELKLRTEGEGSSRRLAEQDAASHAIDQL 208 >gi|16125807|ref|NP_420371.1| ribonuclease III [Caulobacter crescentus CB15] gi|221234567|ref|YP_002517003.1| ribonuclease III [Caulobacter crescentus NA1000] gi|22654073|sp|Q9A805|RNC_CAUCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|254807242|sp|B8H627|RNC_CAUCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|13422947|gb|AAK23539.1| ribonuclease III [Caulobacter crescentus CB15] gi|220963739|gb|ACL95095.1| ribonuclease III [Caulobacter crescentus NA1000] Length = 231 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 124/204 (60%), Gaps = 3/204 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65 LE+RIG+ F +R LLE+ALTH+S+ ++ E LEF+GDR+LGLL + L F Sbjct: 10 DLERRIGHRFEDRELLERALTHASVGDGAKKVRDNEVLEFIGDRVLGLLAAEALAQRFPK 69 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 AKEGEL+ R N+LVS ETC++VAR+ +L +R+S+ K SI A E+L+AA Sbjct: 70 AKEGELAPRLNALVSRETCARVARKAELGPALRLSASSSKIGGRETDSILAGATEALMAA 129 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LY DGG+E A W ++G+ RD KT LQEWA + P Y+V R+GPD Sbjct: 130 LYQDGGLEAARKVFLDLWNDEFDRAGEGRPRDPKTALQEWAQGQGRPLPTYRVLDRTGPD 189 Query: 185 HDPRFTVVVEISGLAPAQGMDCSK 208 H P FTV V ++G+ PA S+ Sbjct: 190 HAPVFTVEVSVTGVDPAIAKGKSR 213 >gi|78046932|ref|YP_363107.1| ribonuclease III [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|90101655|sp|Q3BVV6|RNC_XANC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|78035362|emb|CAJ23007.1| ribonuclease III [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 226 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 106/214 (49%), Gaps = 6/214 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 IG+AFA+ +LL +AL H S ERLEFLGD I+ LLI+ L+ + A EG L+ Sbjct: 12 IGHAFADPALLARALRHRSAG---TPHNERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV + + R L+L + + K SI AD VE+++AA+YLD G Sbjct: 69 RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128 Query: 133 EVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 E AL GK +D KT LQEW A+ P Y + SG +H +F Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFH 188 Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + +A A+G S+R AEQ AA V+ + Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222 >gi|189234048|ref|XP_968993.2| PREDICTED: Dicer-1 [Tribolium castaneum] Length = 1865 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 57/249 (22%), Positives = 95/249 (38%), Gaps = 33/249 (13%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E+ IGY F +RS L +ALTH+S S ++ + Y+RLEFLGD +L LI+ L+ Sbjct: 1609 YDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTR 1668 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99 G L+ ++LV+ + +A + R Sbjct: 1669 MHSPGALTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQEDSGHTLVD 1728 Query: 100 ----SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + + + DV ES+ A++LD G+ + + Y ++ + Sbjct: 1729 ELYLVVETEEVEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWKVYYNMMKSEIEQFSNK 1788 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 K+ ++E K R V VE+ G +G+ + R A+ A Sbjct: 1789 VPKSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVEVFGKGVFKGIGRNYRIAKCTA 1845 Query: 216 AAEVLKREG 224 A LK Sbjct: 1846 AKCALKNLK 1854 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 2/105 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 ++L +ALT S+ + + ERLE +GD L I+ L++ +++ EG+LS + V Sbjct: 1382 PNVLLQALTMSNANDGI--NLERLETIGDSFLKYAITNYLYSKYENVHEGKLSHLRSKQV 1439 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S ++ R L ++ + D +E + Sbjct: 1440 SNLNLYRLGRRKGLGEYMIATKFDPHDNWLPPCFYVPKELEEALI 1484 >gi|270015102|gb|EFA11550.1| dicer-1 [Tribolium castaneum] Length = 1835 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 57/249 (22%), Positives = 95/249 (38%), Gaps = 33/249 (13%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E+ IGY F +RS L +ALTH+S S ++ + Y+RLEFLGD +L LI+ L+ Sbjct: 1579 YDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTR 1638 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99 G L+ ++LV+ + +A + R Sbjct: 1639 MHSPGALTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQEDSGHTLVD 1698 Query: 100 ----SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + + + DV ES+ A++LD G+ + + Y ++ + Sbjct: 1699 ELYLVVETEEVEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWKVYYNMMKSEIEQFSNK 1758 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 K+ ++E K R V VE+ G +G+ + R A+ A Sbjct: 1759 VPKSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVEVFGKGVFKGIGRNYRIAKCTA 1815 Query: 216 AAEVLKREG 224 A LK Sbjct: 1816 AKCALKNLK 1824 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 2/105 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 ++L +ALT S+ + + ERLE +GD L I+ L++ +++ EG+LS + V Sbjct: 1352 PNVLLQALTMSNANDGI--NLERLETIGDSFLKYAITNYLYSKYENVHEGKLSHLRSKQV 1409 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S ++ R L ++ + D +E + Sbjct: 1410 SNLNLYRLGRRKGLGEYMIATKFDPHDNWLPPCFYVPKELEEALI 1454 >gi|213691313|ref|YP_002321899.1| Ribonuclease III [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522774|gb|ACJ51521.1| Ribonuclease III [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457380|dbj|BAJ68001.1| ribonuclease III [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 242 Score = 111 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 7/223 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + L + +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF Sbjct: 13 NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS + S +A+ +L + +I + + + SI D+VESLI Sbjct: 72 DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 131 Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +L+ GI+ A + + A + + G SG Sbjct: 132 GATFLEHGIDEARKVLHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHMEVSG 191 Query: 183 PDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P++ FT V + +G G SKR A+ AA K Sbjct: 192 PEYAQIFTARVSLGENGDIIGIGKGSSKRKAQLAAAEAGWKSL 234 >gi|242008637|ref|XP_002425109.1| dicer-1, putative [Pediculus humanus corporis] gi|212508774|gb|EEB12371.1| dicer-1, putative [Pediculus humanus corporis] Length = 471 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 84/248 (33%), Gaps = 30/248 (12%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y+ LE+ +GY F + LL +A+TH S + Y+RLEFLGD IL L++ + +F Sbjct: 220 YTDLEETLGYTFKRKELLLEAITHPSYVRNRLTPCYQRLEFLGDAILDFLVTVYIQENFK 279 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G ++ ++LV+ T + ++ + D ++ +S IQ ++ Sbjct: 280 DMNPGLITDIRSALVNNSTLACLSVKYDFHKYLLYTSSPLNKCIENFVKIQISNNHAVNE 339 Query: 125 ALYLDGG-------------------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165 + E + + + + Sbjct: 340 QALITLEENDAIMAESVTVPKALGDIFESLAGAIFIDSENSLETVWNVFYKIMKKELDEF 399 Query: 166 HAKFGVTPEYKVTFRSGPD-------HDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVA 215 T + G ++ +V I A G +K+ A++ A Sbjct: 400 TVNPPKTAVRVLHEICGEKPFFETTVYEKVVSVKCSIYYKDEEIVAHGFGDNKKDAKKSA 459 Query: 216 AAEVLKRE 223 LK+ Sbjct: 460 CKMALKQI 467 >gi|227545817|ref|ZP_03975866.1| ribonuclease III [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213933|gb|EEI81772.1| ribonuclease III [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 242 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 7/223 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + L + +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF Sbjct: 13 NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 71 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS + S +A+ +L + +I + + + SI D+VESLI Sbjct: 72 DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 131 Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +L+ GI+ A + + A + + G SG Sbjct: 132 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHMEVSG 191 Query: 183 PDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P++ FT V + +G G SKR A+ AA K Sbjct: 192 PEYAQIFTARVSLGENGDTIGIGKGSSKRKAQLAAAEAGWKSL 234 >gi|238814324|ref|NP_001154925.1| endoribonuclease Dicer [Danio rerio] gi|229485378|sp|Q6TV19|DICER_DANRE RecName: Full=Endoribonuclease Dicer Length = 1865 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1609 FLNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1668 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1669 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1728 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1729 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1788 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1789 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1844 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1845 SAAARRALRSLK 1856 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1275 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1332 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1333 VSNCNLYRLGKKKG 1346 >gi|37266499|gb|AAQ90464.1| Dicer1 [Danio rerio] Length = 1243 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 987 FLNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1046 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97 G L+ ++LV+ + +A + D + Sbjct: 1047 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1106 Query: 98 -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R D K+ + D+ ESL A+Y+D G+ + + Y R L Sbjct: 1107 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1166 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 1167 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1222 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 1223 SAAARRALRSLK 1234 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 653 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 710 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 711 VSNCNLYRLGKKKG 724 >gi|47210543|emb|CAF93935.1| unnamed protein product [Tetraodon nigroviridis] Length = 479 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 95/252 (37%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E++I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 223 FENFERKISYTFQNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 282 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111 G L+ ++LV+ + +A + D + + S V Sbjct: 283 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGM 342 Query: 112 -------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 D+ ESL A+Y+D G+ + + Y R L Sbjct: 343 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 402 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 403 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 458 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 459 SAAARRALRSLK 470 >gi|294791394|ref|ZP_06756551.1| ribonuclease III [Scardovia inopinata F0304] gi|294457865|gb|EFG26219.1| ribonuclease III [Scardovia inopinata F0304] Length = 271 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 63/221 (28%), Positives = 108/221 (48%), Gaps = 5/221 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64 L +G + + L +ALTH S ++ + +YERLEFLGD +L L+I+ L+ + Sbjct: 24 QELFSTLGTSIS-PDLFVEALTHRSFTNEHPLAHNYERLEFLGDAVLELVITETLYKNHP 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG++S + +VS E+ S++AR+ L ++ FI + ++D ++ SI DVVESLI Sbjct: 83 TYSEGQMSRIRSKVVSEESLSEIARDKLKISQFILLGIGEQRDKGAYKPSILCDVVESLI 142 Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++++ GI+ A + A + + K + SG Sbjct: 143 GAVFIEQGIDKARQVIHHLLDDNLAFYTTEGPALDWKTAIVIKAHKMNLGEVSYRMEMSG 202 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P++ FT + I+ A G SKR A+ AA + + Sbjct: 203 PENHLEFTAYLLINDQDVAWGRGSSKRKAQLDAAQKAWHQL 243 >gi|237711457|ref|ZP_04541938.1| ribonuclease III [Bacteroides sp. 9_1_42FAA] gi|229454152|gb|EEO59873.1| ribonuclease III [Bacteroides sp. 9_1_42FAA] Length = 283 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 5/216 (2%) Query: 13 IGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +G+ + S+ E+AL H S+S + ERLEFLGD IL +++ +++ F+ +E Sbjct: 2 LGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIVYKRFEGKRE 61 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V ET +++A E+ L I+ ++ + +V ++ Sbjct: 62 GFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTARQSSHNSYMCGNAFEALVGAIYLDRGY 121 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 + K + + K++L EW+ +T ++P Sbjct: 122 R-ACKYFMEHRIIGSYINLEKISRKEVNFKSKLIEWSQKNRFEVTFELITQSHDQGYNPT 180 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F V + G++ +G SK+ ++Q+AA L + Sbjct: 181 FESEVLVEGISGGKGTGYSKKESQQMAARVALGKIK 216 >gi|16331055|ref|NP_441783.1| ribonuclease III [Synechocystis sp. PCC 6803] gi|2500554|sp|P74368|RNC1_SYNY3 RecName: Full=Ribonuclease 3 1; AltName: Full=Ribonuclease III 1; Short=RNase III 1 gi|1653550|dbj|BAA18463.1| ribonuclease III [Synechocystis sp. PCC 6803] Length = 231 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 112/220 (50%), Gaps = 12/220 (5%) Query: 19 NRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + L +ALTH S + + SY+RLEFLGD +LG ++ +LF + E EL+ + Sbjct: 11 DPQLKLEALTHRSYCNEHPGTPSYDRLEFLGDAVLGFVVGRILFERYPHFTEAELTRLRS 70 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 LV+ + +AR L +A IR+S L +D SI ADV ESL+ A LD G+ Sbjct: 71 QLVNQNQLAYLARFLHIAPEIRLSQSLARDDGQSSPSILADVFESLLGAALLDRGLTAVE 130 Query: 137 TFVDKYWKQRALKSGKFR----------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 F+ + + + K + D K+ LQ+WA AK PEY++ SGP H Sbjct: 131 DFIQELFVPILEQWEKSQDGRSPKLVPTMDVKSMLQQWALAKTKQLPEYELINTSGPPHA 190 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 FT V+++G QG SK+ A + AA E LK G+ Sbjct: 191 QEFTFTVKVAGKIHGQGSGPSKQIATKQAALEALKSLGLL 230 >gi|168698810|ref|ZP_02731087.1| ribonuclease III [Gemmata obscuriglobus UQM 2246] Length = 215 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 64/202 (31%), Positives = 106/202 (52%), Gaps = 3/202 (1%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LL ALTH+S +++ S ERLEFLGD +LGL+ L+ F +EG+L+ +++VS Sbjct: 2 ELLRSALTHTSSANTRAASNERLEFLGDSVLGLVTCEQLYRRFPEYQEGDLTKVKSAVVS 61 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 +TC++ ++E+ L F+ + + +I A+ ESL+AA++LDGG + A FV Sbjct: 62 RKTCARFSQEIRLGDFLFLGRGVN-SNGEMPLNILANAFESLVAAVFLDGGWDAARDFVL 120 Query: 141 KYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + + +AK++LQ ++G TP Y + GPD++ F V ++ Sbjct: 121 DFIDPEVDRVARDAISANAKSQLQTVTQREYGDTPRYFLLDEQGPDNNKCFKVAAQVHDE 180 Query: 199 APAQGMDCSKRAAEQVAAAEVL 220 +K+ AE AA L Sbjct: 181 RFPAAWGHTKKEAELKAAMNAL 202 >gi|168177328|pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 95/252 (37%), Gaps = 37/252 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + T EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 15 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPR 74 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ--------- 115 G L+ ++LV+ + +A + D + + S V Q Sbjct: 75 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEXQGX 134 Query: 116 -----------------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 D+ ESL A+Y D G + + Y + L Sbjct: 135 DSELRRSEEDEEKEEDIEVPKAXGDIFESLAGAIYXDSGXSLEVVWQVYYPXXQPLIEKF 194 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 ++ ++E + +D + V VE+ G +G+ S R A+ Sbjct: 195 SANVPRSPVRELLEXEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 250 Query: 213 QVAAAEVLKREG 224 AA L+ Sbjct: 251 SAAARRALRSLK 262 >gi|296535948|ref|ZP_06898097.1| ribonuclease III [Roseomonas cervicalis ATCC 49957] gi|296263721|gb|EFH10197.1| ribonuclease III [Roseomonas cervicalis ATCC 49957] Length = 234 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 74/204 (36%), Positives = 109/204 (53%), Gaps = 4/204 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65 R+G+ F ++ LLE+ALTH S ++ ++ S ERLEFLGDR+L L+++ L F + Sbjct: 14 FLARLGHEFRDKGLLEQALTHRSAANPRRDMLDSNERLEFLGDRVLALVMAEWLSERFPA 73 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG L R + LV+AET ++V + L + +RV + ++ AD E+LI A Sbjct: 74 EREGALGKRLSVLVAAETLAKVGEAIGLPAMLRVPPAEGRTGLRGRATVIADATEALIGA 133 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LYLD G+EV F+ + W + AK+ LQE + PEY+ +GP H Sbjct: 134 LYLDAGLEVPRRFIRREWAEFVAADPTPPMSAKSRLQEHTLGRAEGLPEYRQVSVTGPSH 193 Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209 P F V V G A+G SKR Sbjct: 194 QPVFVVAVRAGGRE-AEGQGDSKR 216 >gi|330828482|ref|YP_004391434.1| ribonuclease III [Aeromonas veronii B565] gi|328803618|gb|AEB48817.1| Ribonuclease III [Aeromonas veronii B565] Length = 223 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 75/212 (35%), Positives = 110/212 (51%), Gaps = 6/212 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ + L+ R+G+ FA+ LL +ALTH S + ERLEFLGD IL L+I+ LF+ Sbjct: 1 MNIKMNRLQSRLGHVFADLELLTRALTHRSAGSRH---NERLEFLGDSILSLVIADDLFH 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A EG+LS +LV +T +++ RE DL + + K SI AD VE+ Sbjct: 58 RFPQAAEGDLSRMRATLVREKTLAELGREFDLGDHLILGPGELKSGGFRRESILADTVEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A+YLD +E T + ++ R + ++D KT LQE P Y VT Sbjct: 118 VIGAVYLDTNLETVRTLLLSWYASRLEEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVTN 177 Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ FTV ++ GL P G+ S+R Sbjct: 178 VKGEAHNQEFTVQCDVEGLDGPLVGVGTSRRK 209 >gi|145300361|ref|YP_001143202.1| ribonuclease III [Aeromonas salmonicida subsp. salmonicida A449] gi|142853133|gb|ABO91454.1| ribonuclease III [Aeromonas salmonicida subsp. salmonicida A449] Length = 223 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 73/212 (34%), Positives = 109/212 (51%), Gaps = 6/212 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ + L+ R+G+ F ++ LL +ALTH S + ERLEFLGD IL L+I+ LF+ Sbjct: 1 MNIKMNRLQSRLGHVFHDKELLTRALTHRSAGSRH---NERLEFLGDSILSLVIADALFH 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A EG+LS +LV +T +++ RE DL + + K SI AD VE+ Sbjct: 58 RFPQAAEGDLSRMRATLVREKTLAELGREFDLGDDLILGPGELKSGGFRRESILADTVEA 117 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A+YLD +E + ++ R + ++D KT LQE P Y VT Sbjct: 118 VIGAVYLDTDLEAVRVLLLSWYASRLDEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVTN 177 Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H+ FTV ++ GL P G+ S+R Sbjct: 178 VKGEAHNQEFTVQCDVEGLDGPLVGVGTSRRK 209 >gi|312890952|ref|ZP_07750480.1| ribonuclease III [Mucilaginibacter paludis DSM 18603] gi|311296568|gb|EFQ73709.1| ribonuclease III [Mucilaginibacter paludis DSM 18603] Length = 241 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 60/231 (25%), Positives = 102/231 (44%), Gaps = 10/231 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57 + L+ +G+ N SL A H S++ + S ERLEFLGD ILG +++ Sbjct: 14 NRKYVKALKNLLGFVPGNLSLYRLAFRHKSVAQNVKKGVKNSNERLEFLGDAILGCVVAE 73 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +LF + EG L+ + +VS +Q+AR+L + D R + S+ D Sbjct: 74 VLFKLYPYEDEGFLTELRSKIVSRVNLNQLARKLGFEQ--LIEYDSRMVGSTRQGSLLGD 131 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPE 174 E+L+ A+YLD G + F+ + + + + + K++L EW Sbjct: 132 AFEALVGAVYLDKGYDFTKNFLVNHIIKSHIDIHKLEQTESNFKSKLIEWCQRHSKDVSF 191 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 V + G FT+ I G G + +K+ AE++AA + + I Sbjct: 192 DLVENKEGESP-KLFTIQASIDGEVLGVGKEFNKKNAEKLAAEKACEALSI 241 >gi|269978187|ref|ZP_06185137.1| ribonuclease III [Mobiluncus mulieris 28-1] gi|306818562|ref|ZP_07452285.1| ribonuclease III [Mobiluncus mulieris ATCC 35239] gi|307700841|ref|ZP_07637866.1| ribonuclease III [Mobiluncus mulieris FB024-16] gi|269933696|gb|EEZ90280.1| ribonuclease III [Mobiluncus mulieris 28-1] gi|304648735|gb|EFM46037.1| ribonuclease III [Mobiluncus mulieris ATCC 35239] gi|307613836|gb|EFN93080.1| ribonuclease III [Mobiluncus mulieris FB024-16] Length = 269 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 6/202 (2%) Query: 19 NRSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 + LL A+TH S SH + ++ ERLEFLGD +L ++++ L+ +F EG L+ Sbjct: 35 DPDLLVLAMTHRSFSHEHGKTGSRGTNERLEFLGDAVLQIIVTEYLYRNFPDEPEGTLAQ 94 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + VS ++VAR++ L ++R+ + SI +D +E+LI A +L G+ Sbjct: 95 MRAATVSQTPLAEVARKIHLGEYLRLGVGEDRQGGRDKDSILSDTLEALIGATFLSCGLS 154 Query: 134 VAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 V V+++ ++ + + + + +GPDH F+ Sbjct: 155 VTRVVVERHLRRFLRNAPRRAVTLDWKTTLQELLSAADLGEVTYEVVATGPDHQKHFSAQ 214 Query: 193 VEISGLAPAQGMDCSKRAAEQV 214 + G +G SK+ AE Sbjct: 215 ALVEGENWGEGQGSSKKIAEHQ 236 >gi|325963729|ref|YP_004241635.1| RNAse III [Arthrobacter phenanthrenivorans Sphe3] gi|323469816|gb|ADX73501.1| RNAse III [Arthrobacter phenanthrenivorans Sphe3] Length = 242 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 93/212 (43%), Gaps = 6/212 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 MS+ L KR+G F + L ALTH S ++ + ERLEFLGD ILG ++ Sbjct: 1 MSST--EELLKRLGV-FIDAGTLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDA 57 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ EG+L+ R +++VS + + R L + +I + + SI AD Sbjct: 58 LYRDNPDLPEGDLAKRRSAVVSTRALAGIGRSLGIGEYIYLGQGEKLTQGKNKASILADT 117 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A Y+ IE A V + + + A + + Sbjct: 118 MEALIGATYVSNDIETARQLVMRLIGPLLKDAAALGAGTDWKTSIQELAASRQLGTIHYA 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +GPDH FT V+ + G A +G SK+ Sbjct: 178 VDGTGPDHARTFTAVLHVGGTAYGKGSGHSKK 209 >gi|326316027|ref|YP_004233699.1| ribonuclease 3 [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372863|gb|ADX45132.1| Ribonuclease 3 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 228 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 76/216 (35%), Positives = 109/216 (50%), Gaps = 6/216 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + S L+ R+ +AF++ SLL++A+TH S S + ERLEFLGD +L L +S+LL+ Sbjct: 1 MVSPSLSALQDRLQHAFSDPSLLQRAITHRSFS---ADHNERLEFLGDSVLSLAVSSLLY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+LS +LV E +A L L +R+ K SI AD +E Sbjct: 58 QRLRDLPEGDLSRVRANLVRQEALHDLALGLQLPQVLRLGEGETKSGGKQRPSILADALE 117 Query: 121 SLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD G + A V + + +DAKT LQEW + P+Y+V Sbjct: 118 ALIGAVYLDAGYQCAEALVHRLYKDVEINPRMQAAEKDAKTALQEWLQGRKMKLPQYRVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 G H F V +I L + G+ S+RA EQ Sbjct: 178 ATVGAAHRQTFDVECDIPELGLTERGIGGSRRAGEQ 213 >gi|110598670|ref|ZP_01386935.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031] gi|110339723|gb|EAT58233.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031] Length = 270 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 106/222 (47%), Gaps = 7/222 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLF 60 + L + +G +N L + ALTH S+ H ES +RLEFLGD +LGLLIS LF Sbjct: 36 IAYLRRLVGEPASNLLLYQTALTHRSVVHDPATQHLVESNQRLEFLGDSVLGLLISDYLF 95 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F + EGELS + +V+ ++ + A ++LA ++ ++ + S AD E Sbjct: 96 RTFPGSAEGELSSNRSKIVNRKSLAGFAASMNLADYLLTGESADRNKITSSDSALADAFE 155 Query: 121 SLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 SL A+YLD GI + + + K+ L E+ ++ P Y V Sbjct: 156 SLTGAIYLDKGILAAENFIRKHVLEHENFRMIVEAEHNYKSRLIEYTQSRHLPMPVYSVL 215 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 G +H+ +FTV V S G K+ AEQ+AA E L Sbjct: 216 EECGAEHEKQFTVGVSCSDRHLGSGTARRKKDAEQLAAKEAL 257 >gi|154509007|ref|ZP_02044649.1| hypothetical protein ACTODO_01524 [Actinomyces odontolyticus ATCC 17982] gi|153798641|gb|EDN81061.1| hypothetical protein ACTODO_01524 [Actinomyces odontolyticus ATCC 17982] Length = 240 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 5/207 (2%) Query: 22 LLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ AL H S ++ + ERLEFLGD +L ++I+ L+ + E +LS + V Sbjct: 30 LLQLALVHRSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRAATV 89 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + + AR + L F+ + SI +D E+LI A YL G+E A + Sbjct: 90 SQQPLAAAARRIGLGDFVFLGKGESMHGGRDKDSILSDTFEALIGATYLTSGLEEARRVI 149 Query: 140 -DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 ++ + + + G+ GPDH FT +S Sbjct: 150 LERLSFLLVDAPSRGQHQDWKTILIEYSQAHGLGEVSYEVEGEGPDHQRVFTARAFVSER 209 Query: 199 --APAQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ AE AA + + R Sbjct: 210 PDPIGSGQASSKKHAENAAAQDAMSRL 236 >gi|86158075|ref|YP_464860.1| ribonuclease III [Anaeromyxobacter dehalogenans 2CP-C] gi|85774586|gb|ABC81423.1| RNAse III [Anaeromyxobacter dehalogenans 2CP-C] Length = 385 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 74/212 (34%), Positives = 115/212 (54%), Gaps = 6/212 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHF 63 LE R+G A A+R ALTH S + ++E ERLEFLGD ++ L +S L F Sbjct: 27 ALEARLGLAVADREAALAALTHKSYVNEHREDGLQDNERLEFLGDAVIDLAVSHRLMERF 86 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 SA+EG+LS ++V + +++AR LDL + +R+ +S+ AD +E++I Sbjct: 87 PSAREGDLSKMRAAVVDEQGLAEMARTLDLGALLRLGRGEELTGGRQKSSLLADAMEAVI 146 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 AA+Y G+ +FVD++ + ++ RD KT+LQE + ++ TP Y+V Sbjct: 147 AAIYRGQGLPAVLSFVDRFLGEAFARAAAGTLDRDFKTQLQELSQSRLRATPRYRVVAEH 206 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 GPDH F V ++ G +G SK+ AEQ Sbjct: 207 GPDHSKTFEVETDLRGEVMGRGAGRSKKDAEQ 238 >gi|304382096|ref|ZP_07364607.1| ribonuclease 3 [Prevotella marshii DSM 16973] gi|304336694|gb|EFM02919.1| ribonuclease 3 [Prevotella marshii DSM 16973] Length = 359 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 + L + IG+ S ++AL H S++ + + ERLEFLGD IL ++ +++ Sbjct: 20 FLALRRIIGFYPHEISYYQQALMHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV ET +++A+E+ + + I S + +V + Sbjct: 80 HFPGKREGFLTNTRSKLVQRETLNRLAKEMGINNLILSSGRTSSHNSYMGGNAFEALVGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + + ++ + + K K++L EW+ V + Sbjct: 140 IYLDKGYNACMKFMNHRILGQIINLDKMAYKEVNF-KSKLIEWSQKNRIRLDFELVEQKK 198 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +P FT V + + G SK+ ++Q A+ + LK+ Sbjct: 199 DESGNPVFTCKVVLEDVEGCCGTGFSKKESQQTASEKTLKKL 240 >gi|154483581|ref|ZP_02026029.1| hypothetical protein EUBVEN_01285 [Eubacterium ventriosum ATCC 27560] gi|149735491|gb|EDM51377.1| hypothetical protein EUBVEN_01285 [Eubacterium ventriosum ATCC 27560] Length = 190 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 66/186 (35%), Positives = 97/186 (52%), Gaps = 1/186 (0%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 + ERLEFLGD +L LL S L+ + EG+++ SLV T + ARE+DL FI Sbjct: 2 KDNERLEFLGDAVLELLSSEYLYKNMKDMPEGKMTKLRASLVCEPTLAMDAREIDLEDFI 61 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + + SI +D E+LI A++LDGGIE A F+ K+ K K D+ Sbjct: 62 YLGKGEDETGGRKRDSIVSDAFEALIGAIFLDGGIEEAKYFILKFALNDIEKK-KLFYDS 120 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 KT LQE ++ Y++ GPDH+ + +++G +G +K+AAEQ AA Sbjct: 121 KTVLQERVNSVKNGNLVYEIIKEWGPDHNKTYEAAAKLNGKIIGKGQGHTKKAAEQQAAF 180 Query: 218 EVLKRE 223 + LK Sbjct: 181 DALKTL 186 >gi|167752469|ref|ZP_02424596.1| hypothetical protein ALIPUT_00720 [Alistipes putredinis DSM 17216] gi|167659538|gb|EDS03668.1| hypothetical protein ALIPUT_00720 [Alistipes putredinis DSM 17216] Length = 264 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 61/218 (27%), Positives = 91/218 (41%), Gaps = 11/218 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61 Y +++ G+ N L + AL H S S Q + ERLEFLGD ++ + S L+ Sbjct: 20 YRIIDELFGFVPHNIELYKLALIHKSASLVLADGRQINNERLEFLGDAVIEAVTSDYLYI 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +EG L+ + +VS ++ + +AR + L ++ + I D E+ Sbjct: 80 EFPDRQEGFLTQLRSKIVSRQSLNTIARTIGLDRYVIA----NPTGSTNQKHIYGDAFEA 135 Query: 122 LIAALYLDGGIEVAGT---FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +I A+YLD G E A Y D K+ L EW V Sbjct: 136 MIGAIYLDQGYEFANRLLINNIYYRYLNLDNLTDEETDFKSRLIEWCQKTHHTIAFETVH 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 R+ + P F V I G+ G SK+ AEQ AA Sbjct: 196 GRNYSSNHPIFDATVVIDGIRVGHGQGESKKEAEQCAA 233 >gi|326387678|ref|ZP_08209284.1| ribonuclease III [Novosphingobium nitrogenifigens DSM 19370] gi|326207724|gb|EGD58535.1| ribonuclease III [Novosphingobium nitrogenifigens DSM 19370] Length = 233 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 83/216 (38%), Positives = 110/216 (50%), Gaps = 3/216 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L G+ + L +ALTH S+ Y+RLEFLGDR+LG L + S Sbjct: 18 LAFLTAVFGHEPIRQDLWHEALTHGSLGE--ARDYQRLEFLGDRVLG-LAVAEWLHGDSS 74 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EG+LS R N+LVS ETC+ VAR L +A +R+ R D + +I DV+E+LI A Sbjct: 75 AAEGKLSQRLNALVSRETCADVARTLGIAPHMRLGKQARDDGGADSDNILGDVMEALIGA 134 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 L+L+ G A FV + W R+ K LQEWA P Y + R GPDH Sbjct: 135 LFLERGFPAARDFVRRAWAAPMAAGAGQRKHPKAALQEWAAGNKRKPPIYTLVAREGPDH 194 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 FTV V + G+ SK+ AE AA E +K Sbjct: 195 AATFTVSVTVKGVGEMTARGSSKQEAETSAAREFMK 230 >gi|313768337|ref|YP_004062017.1| hypothetical protein MpV1_134 [Micromonas sp. RCC1109 virus MpV1] gi|312599033|gb|ADQ91057.1| hypothetical protein MpV1_134 [Micromonas sp. RCC1109 virus MpV1] Length = 235 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 62/211 (29%), Positives = 102/211 (48%), Gaps = 4/211 (1%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSA 66 E+ +G N L +KA TH S Y+ ES+E LEF+GD +LG +I+ LF+ F+S Sbjct: 11 EQLVGTKIKNLDLYQKAFTHKSALKEYEQFTESFETLEFIGDSVLGFVITKFLFDRFESR 70 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG L+ LV ET +++A L L + + ++ + I DV E+LI A+ Sbjct: 71 QEGFLTKARTKLVRGETLARIANALGLNELVIMDEKGMRNGWNNNPKILEDVFEALIGAI 130 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y+D G+ A F+ + ++ L ++ V +R H+ Sbjct: 131 YMDIGLIHAKEFILRIYQDPKLVDLNSIMVD-DNYKDHLMRHCQVNNWQLPEYRVAAHHE 189 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 F + + I+ L ++G+ SK+ AEQ AA Sbjct: 190 GLFYIDIYINNLFCSRGVAKSKKQAEQNAAQ 220 >gi|87199824|ref|YP_497081.1| ribonuclease III [Novosphingobium aromaticivorans DSM 12444] gi|87135505|gb|ABD26247.1| RNAse III [Novosphingobium aromaticivorans DSM 12444] Length = 252 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 83/202 (41%), Positives = 111/202 (54%), Gaps = 3/202 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 + +ALTH S+ Y+RLEFLGDR+LGL I+ + A EG+LS R N+LV Sbjct: 51 PEIWAEALTHGSMGEP--RDYQRLEFLGDRVLGLAIAD-WLHEKSDAAEGKLSQRLNALV 107 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S ETC+ VAR + LA IR+ R D + +I DV+E+LI AL+++ G E A FV Sbjct: 108 SRETCADVARTIGLAGHIRLGKQARDDGGAQSDNILGDVMEALIGALFVERGFEAARKFV 167 Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 K W++ L R+ K LQEWA P Y + R GPDH FTV VE+ G+ Sbjct: 168 RKAWEKPMLSGTGQRKHPKAALQEWAAGNRRKPPVYTLVSREGPDHAATFTVSVEVKGVG 227 Query: 200 PAQGMDCSKRAAEQVAAAEVLK 221 A SK+ AE AA ++ Sbjct: 228 EASARGSSKQEAETAAARAFMQ 249 >gi|73541939|ref|YP_296459.1| ribonuclease III [Ralstonia eutropha JMP134] gi|90101640|sp|Q46Z18|RNC_RALEJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|72119352|gb|AAZ61615.1| RNAse III [Ralstonia eutropha JMP134] Length = 256 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 6/209 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S S + ERLEFLGD +L ++ +LF F Sbjct: 1 MNLDALQQRLGYRFSKPELLQQALTHRSHS---AQHNERLEFLGDSVLNCAVADMLFGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L+ +R+ K SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLSEVLRLGEGELKSGGFRRPSILADALEAIV 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G E A T + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDAGFEAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKR 209 G H +F V + L G S+R Sbjct: 178 GAAHSQQFEVECMVPKLEVRVFGTGASRR 206 >gi|224282434|ref|ZP_03645756.1| ribonuclease III [Bifidobacterium bifidum NCIMB 41171] gi|310286876|ref|YP_003938134.1| Ribonuclease III [Bifidobacterium bifidum S17] gi|311063777|ref|YP_003970502.1| ribonuclease III [Bifidobacterium bifidum PRL2010] gi|313139580|ref|ZP_07801773.1| ribonuclease 3 [Bifidobacterium bifidum NCIMB 41171] gi|309250812|gb|ADO52560.1| Ribonuclease III [Bifidobacterium bifidum S17] gi|310866096|gb|ADP35465.1| RncS Ribonuclease III [Bifidobacterium bifidum PRL2010] gi|313132090|gb|EFR49707.1| ribonuclease 3 [Bifidobacterium bifidum NCIMB 41171] Length = 255 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 95/223 (42%), Gaps = 7/223 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64 L +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF Sbjct: 8 EELFSALGVTIS-PDLLIQALTHRSFSHEHPGTSNYERLEFLGDAVLELVSTETLFTLHP 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS E S +AR+ L + FI + + + +SI D+VESLI Sbjct: 67 DMTEGQLAKMRAKAVSEEALSAIARDKLHVGPFILLGHGEAESGGAEKSSILCDIVESLI 126 Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +L+ GIE A V + A + + + G+ SG Sbjct: 127 GATFLEHGIEGARKVVHRLIDDTLAEVATEGPALDWKTSLTVKAHELGLDEPRYRMSVSG 186 Query: 183 PDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P++ FT I +G SKR A+ AA Sbjct: 187 PEYAQEFTAKATIGPKDDIIGKGTGTSKRKAQLAAAEMAWHEL 229 >gi|188995567|ref|YP_001929819.1| putative ribonuclease III [Porphyromonas gingivalis ATCC 33277] gi|188595247|dbj|BAG34222.1| putative ribonuclease III [Porphyromonas gingivalis ATCC 33277] Length = 261 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L +G+ + + E A HSS S Y+ + ERLEFLGD +L IS L+ Sbjct: 26 LSDILGFKPSRIAFYELAFRHSSCSLVDDEGYRLNNERLEFLGDSVLATAISGYLYRQHP 85 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG++S R +++V + + VA++L L F+ V ++ + M + ++ ++ Sbjct: 86 HWDEGDMSQRRSAIVKRQINNVVAKKLRLDRFLIVRGEISQMSSDIMGNTLEALIGAIYL 145 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + T + + + K+ L EWA ++ Sbjct: 146 DKGYQAAEKFVLTRFIPVFHELEDSLTDTTTNYKSLLLEWAQKHHLNLEFRLISEPKRAH 205 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F V + G G+ +K+ A Q AA + L++ Sbjct: 206 G--HFNYAVFVDGHRIGSGIGMNKKEAHQNAAHDALEKLK 243 >gi|298253314|ref|ZP_06977106.1| dsRNA-specific ribonuclease [Gardnerella vaginalis 5-1] gi|297532709|gb|EFH71595.1| dsRNA-specific ribonuclease [Gardnerella vaginalis 5-1] Length = 276 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64 L +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF+ Sbjct: 49 QELLNALGTTIS-PDLLVEALTHRSFSHEHPGTRNYERLEFLGDAVLELVSTETLFSAHP 107 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS S VAR +L + ++I + + + SI D+VE+LI Sbjct: 108 DMTEGQLAKMRAKAVSEWALSAVAREKLHVGAYILLGRGEMEQGGNNKDSILCDIVEALI 167 Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +++ GI+ A V + A + G+ SG Sbjct: 168 GATFVEHGIDEARRVVHRLIDDTLAEVLTEGPALDWKTSLTVKAHDMGLEDPEYRMAVSG 227 Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P++ P F + G SKR A+ AA Sbjct: 228 PEYAPVFEARAVLARKDGDEVLGVGSGSSKRKAQLAAAEIAWHAL 272 >gi|297242888|ref|ZP_06926826.1| dsRNA-specific ribonuclease [Gardnerella vaginalis AMD] gi|296889099|gb|EFH27833.1| dsRNA-specific ribonuclease [Gardnerella vaginalis AMD] Length = 273 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64 L +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF+ Sbjct: 46 QELLNALGTTIS-PDLLVEALTHRSFSHEHPGTRNYERLEFLGDAVLELVSTETLFSAHP 104 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS S VAR +L + ++I + + + SI D+VE+LI Sbjct: 105 DMTEGQLAKMRAKAVSEWALSAVAREKLHVGAYILLGRGEMEQGGNNKDSILCDIVEALI 164 Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +++ GI+ A V + A + G+ SG Sbjct: 165 GATFVEHGIDEARRVVHRLIDDTLAEVLTEGPALDWKTSLTVKAHDMGLEDPEYRMAVSG 224 Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P++ P F + G SKR A+ AA Sbjct: 225 PEYAPVFEARAVLAHKDGDEVLGVGSGSSKRKAQLAAAEIAWHAL 269 >gi|283782836|ref|YP_003373590.1| ribonuclease III [Gardnerella vaginalis 409-05] gi|283442034|gb|ADB14500.1| ribonuclease III [Gardnerella vaginalis 409-05] Length = 242 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64 L +G + LL +ALTH S SH + +YERLEFLGD +L L+ + LF+ Sbjct: 15 QELLNALGTTIS-PDLLVEALTHRSFSHEHPGTRNYERLEFLGDAVLELVSTETLFSAHP 73 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS S VAR +L + ++I + + + SI D+VE+LI Sbjct: 74 DMTEGQLAKMRAKAVSEWALSAVAREKLHVGAYILLGRGEMEQGGNNKDSILCDIVEALI 133 Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +++ GI+ A V + A + G+ SG Sbjct: 134 GATFVEHGIDEARRVVHRLIDDTLAEVLTEGPALDWKTSLTVKAHDMGLEDPEYRMAVSG 193 Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P++ P F + G SKR A+ AA Sbjct: 194 PEYAPVFEARAVLAHKDGDEVLGVGSGSSKRKAQLAAAEIAWHAL 238 >gi|170033786|ref|XP_001844757.1| endoribonuclease Dcr-1 [Culex quinquefasciatus] gi|167874834|gb|EDS38217.1| endoribonuclease Dcr-1 [Culex quinquefasciatus] Length = 2270 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 89/248 (35%), Gaps = 29/248 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS E +GY F +RS L +A+TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 2014 YSAFEDSLGYRFQDRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2073 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A D + R S DV IQ D S+ Sbjct: 2074 QHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHSISE 2133 Query: 125 ALYLDGGIEVA---------------------GTFVDKYWKQRALKSGKFRRDAKTELQE 163 YL E + + + E Sbjct: 2134 EYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMSLDAVWRVYRGMMGPEIEQFS 2193 Query: 164 WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + K + T + G R V VE+ G +G+ + R A+ AA Sbjct: 2194 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGTFRGIGRNYRIAKCTAA 2253 Query: 217 AEVLKREG 224 L++ Sbjct: 2254 KCALRQLK 2261 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1731 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYENVHEGKLSHLRSKQV 1788 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 S ++ R L + + D +E Sbjct: 1789 SNLNLYRLGRRKVLGESMIATKFEPHDNWLPPCYYVPKELE 1829 >gi|85373795|ref|YP_457857.1| ribonuclease III [Erythrobacter litoralis HTCC2594] gi|84786878|gb|ABC63060.1| ribonuclease III [Erythrobacter litoralis HTCC2594] Length = 223 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 78/211 (36%), Positives = 111/211 (52%), Gaps = 3/211 (1%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G+A + L +ALTH S Y+RLEFLGDR+LGL IS LF EG L+ Sbjct: 16 GFAVEDDELWLEALTHGSTGAE--RDYQRLEFLGDRVLGLAISDHLFRKVGG-SEGALAQ 72 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 R N+LVS C+++ R + L+ + + R+D + T+I DVVE+L+ A YLD G Sbjct: 73 RLNALVSKGACAKIGRRIGLSDHLVLGKQAREDGAAQSTNILGDVVEALLGANYLDAGFG 132 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 V W + + K+ LQEWA P+Y++ RSGPDH FTV V Sbjct: 133 PTCALVHLLWDEDLNGMAGRSKHPKSALQEWAAGNQRRPPQYELVDRSGPDHAAIFTVRV 192 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 E+ + A+ SK+ AE AA + +++ G Sbjct: 193 EVHKVGAAEATASSKQEAETEAAKKFMEQFG 223 >gi|225460893|ref|XP_002278706.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 364 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 101/243 (41%), Gaps = 27/243 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M A +E+ I Y F N+ LLE+ALTHSS + SY+RLEF+GD LG +S +F Sbjct: 28 MEA-SVEAVERIINYKFRNKKLLEEALTHSSYTD--SASYQRLEFIGDAALGCALSNYVF 84 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111 + S G+LS+ + +S E ++VA + L ++R ++ D Sbjct: 85 LAYPSLDPGQLSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQEEGD 144 Query: 112 ----------TSIQADVVESLIAALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTE 160 AD+VES+ AA+Y+D + + + + + ++ + Sbjct: 145 SVLYGGSVKAPKFLADIVESVAAAIYVDCNFDLQVLWVIFRGLLEPIVTHEALQQQPQPV 204 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + +R G + V + G A G K A+ AA E L Sbjct: 205 TLLYELCQKDGKHVDIKHWRKGSKN----IASVYVGGKFIASGSSDEKEIAKLNAAKEAL 260 Query: 221 KRE 223 ++ Sbjct: 261 QKL 263 Score = 36.8 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSK---RAA 211 K +L E+ K P Y++ GP H+ F V I G+ QG +K + A Sbjct: 289 KQKLHEFCSKKKWPKPSYRIEKEVGPAHEKGFLCSVHIETVDGVLVMQGD--TKPRVKDA 346 Query: 212 EQVAAAEVL 220 E AA+ ++ Sbjct: 347 ENSAASFMI 355 >gi|297737474|emb|CBI26675.3| unnamed protein product [Vitis vinifera] Length = 337 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 101/243 (41%), Gaps = 27/243 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M A +E+ I Y F N+ LLE+ALTHSS + SY+RLEF+GD LG +S +F Sbjct: 1 MEA-SVEAVERIINYKFRNKKLLEEALTHSSYTD--SASYQRLEFIGDAALGCALSNYVF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111 + S G+LS+ + +S E ++VA + L ++R ++ D Sbjct: 58 LAYPSLDPGQLSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQEEGD 117 Query: 112 ----------TSIQADVVESLIAALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTE 160 AD+VES+ AA+Y+D + + + + + ++ + Sbjct: 118 SVLYGGSVKAPKFLADIVESVAAAIYVDCNFDLQVLWVIFRGLLEPIVTHEALQQQPQPV 177 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + +R G + V + G A G K A+ AA E L Sbjct: 178 TLLYELCQKDGKHVDIKHWRKGSKN----IASVYVGGKFIASGSSDEKEIAKLNAAKEAL 233 Query: 221 KRE 223 ++ Sbjct: 234 QKL 236 Score = 36.8 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSK---RAA 211 K +L E+ K P Y++ GP H+ F V I G+ QG +K + A Sbjct: 262 KQKLHEFCSKKKWPKPSYRIEKEVGPAHEKGFLCSVHIETVDGVLVMQGD--TKPRVKDA 319 Query: 212 EQVAAAEVL 220 E AA+ ++ Sbjct: 320 ENSAASFMI 328 >gi|34541386|ref|NP_905865.1| ribonuclease III [Porphyromonas gingivalis W83] gi|34397703|gb|AAQ66764.1| ribonuclease III [Porphyromonas gingivalis W83] Length = 237 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 6/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L +G+ + + E A HSS S Y+ + ERLEFLGD +L IS L+ Sbjct: 2 LSDILGFKPSRIAFYELAFRHSSCSLVDDEGYRLNNERLEFLGDSVLATAISGYLYRQHP 61 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG++S R +++V + + VA++L L F+ V ++ + M + ++ ++ Sbjct: 62 HWDEGDMSQRRSAIVKRQINNVVAKKLRLDRFLIVRGEISQMSSDIMGNTLEALIGAIYL 121 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + T + + + K+ L EWA ++ Sbjct: 122 DKGYQAAEKFVLTRFIPVFHELEDSLTDTTTNYKSLLLEWAQKHHLNLEFRLISEPKRAH 181 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F V + G G+ +K+ A Q AA + L++ Sbjct: 182 G--HFNYAVFVDGHRIGSGIGMNKKEAHQNAAHDALEKLK 219 >gi|255016282|ref|ZP_05288408.1| ribonuclease III [Bacteroides sp. 2_1_7] Length = 256 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 96/220 (43%), Gaps = 5/220 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63 +L K +G+ N + E+AL H S S + + ERLEFLGD IL ++ +++ + Sbjct: 2 SLSKILGFYPDNLQIYEQALLHKSSSVETGDGKWLNNERLEFLGDGILDAAVADIVYKRY 61 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + +EG L+ + +V ET ++VA +L L + S+ + + ++ ++ Sbjct: 62 PNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYSTKINSHNNHMYGNALEALIGAIY 121 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 D + + + + + K K+ L EW+ + + Sbjct: 122 LDQGYDVCYKFIRDVMIEKYIDVDMLVRKEINF-KSNLIEWSQKNKISISFDLIESFTDH 180 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D +P F +++ G G+ SK+ ++Q A+ +KR Sbjct: 181 DGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKRL 220 >gi|304413540|ref|ZP_07395013.1| ribonuclease III [Candidatus Regiella insecticola LSR1] gi|304284383|gb|EFL92776.1| ribonuclease III [Candidatus Regiella insecticola LSR1] Length = 235 Score = 110 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 15/221 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE R+GYAF R+LL +ALTH S S ++ ERLEFLGD IL I+ L+ Sbjct: 1 MDPIIIKKLETRLGYAFKQRALLVQALTHRSASRTH---NERLEFLGDAILNFFIAKALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV +T +++A E DL+ ++ + K+ S SI AD VE Sbjct: 58 QRFSDINEGDMSRMRATLVRGKTLAEIAHEFDLSDYLYLGKGELKNGKSPRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + ++++R + G+ ++D KT LQE+ + P Y VT Sbjct: 118 ALIGGIFLDSDIQTTERLLLTWYEKRLAEISPGEKQKDPKTRLQEYLQSHHLPLPSYLVT 177 Query: 179 FRSGPDHDPRFTVVVEI----------SGLAPAQGMDCSKR 209 G H+ +F + + +G S+R Sbjct: 178 QVHGEAHEQKFIIHCKFIIPCRENNLTKQEITVRGCGLSRR 218 >gi|239917409|ref|YP_002956967.1| RNAse III [Micrococcus luteus NCTC 2665] gi|239838616|gb|ACS30413.1| RNAse III [Micrococcus luteus NCTC 2665] Length = 220 Score = 110 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 23 LEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LE+ALTH S ++ + ERLEFLGD +LG +++ +F + EG+L+ R ++VS Sbjct: 8 LERALTHRSFAYEQGGLPTNERLEFLGDSVLGYVVTDHIFTVYPDLAEGDLARRRAAVVS 67 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 ++VAR + + F+R+ + R+ + SI AD +E+LI A+Y+D G A V Sbjct: 68 TRALAKVARRIGIGPFVRLGTGERRTGGADKDSILADTLEALIGAVYVDHGAVAAAALVH 127 Query: 141 KYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 ++ + + A ++ G+ GP HDPR+ + + Sbjct: 128 RHVVPLLDEPDLLRESTDWKTVVAEAASRHGLGAVRYAIEGQGPAHDPRYRATLVVGERE 187 Query: 200 PAQGMDCSKRAAEQVAAAE---VLK 221 + SK+ AE+ AAA L+ Sbjct: 188 YGSAVASSKKQAERDAAAASWPALE 212 >gi|293192364|ref|ZP_06609475.1| ribonuclease III [Actinomyces odontolyticus F0309] gi|292820279|gb|EFF79273.1| ribonuclease III [Actinomyces odontolyticus F0309] Length = 240 Score = 110 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 5/207 (2%) Query: 22 LLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ AL H S ++ + ERLEFLGD +L ++I+ L+ + E +LS + V Sbjct: 30 LLQLALVHRSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRAATV 89 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S + + AR + L F+ + SI +D E+LI A YL G+E A + Sbjct: 90 SQQPLAAAARRIGLGDFVFLGKGESMHGGRDKDSILSDTFEALIGATYLTSGLEEARRVI 149 Query: 140 -DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 ++ + + + G+ GPDH FT +S Sbjct: 150 LERLSFLLVDAPSRGQHQDWKTILIEYSQAQGLGEVSYEVEGEGPDHQRVFTARAFVSER 209 Query: 199 --APAQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ AE AA + + R Sbjct: 210 PDPIGSGQASSKKHAENAAAQDAMSRL 236 >gi|213389868|gb|ACJ45995.1| putative ribonuclease III [Palm lethal yellowing phytoplasma] Length = 207 Score = 110 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 83/209 (39%), Gaps = 7/209 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLF 60 + L +R+ N SL ALTHSS ++ ERLEFLGD ++ L++ L+ Sbjct: 1 MPLQKLFQRLKIEPKNISLYINALTHSSYANESPFQNNDNERLEFLGDAVINFLMANYLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG ++ + V ++ A E+DL +I + +K SI AD E Sbjct: 61 RK-NKYDEGSMTKKRAQAVCIDSLLIYANEIDLKEYILLGKGEQKRYIHNY-SIIADAFE 118 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +L A+YLD G E K K + T YK+ Sbjct: 119 ALFGAIYLDLGYEQVKKTFYYVVLPCLNKIIKIID--YKTQLQEIVQAEKQTIHYKIIEE 176 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +G H+ F V ++ G +K+ Sbjct: 177 TGLAHEKEFIAEVYLNNKLLGSGTGKTKK 205 >gi|194290152|ref|YP_002006059.1| ribonuclease iii [Cupriavidus taiwanensis LMG 19424] gi|238692743|sp|B3R1Z9|RNC_CUPTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|193223987|emb|CAQ69996.1| Ribonuclease III [Cupriavidus taiwanensis LMG 19424] Length = 256 Score = 110 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 6/209 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S S + ERLEFLGD +L ++ +L+ F Sbjct: 1 MNLDALQQRLGYRFSKPELLQQALTHRSHS---AQHNERLEFLGDSVLNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L+ +R+ K SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLSDTLRLGEGELKSGGFRRPSILADALEAIV 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDAGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKR 209 G H +F V + L G S+R Sbjct: 178 GAAHSQQFEVECTVPKLEVRVFGTGASRR 206 >gi|113868517|ref|YP_727006.1| ribonuclease III [Ralstonia eutropha H16] gi|123133802|sp|Q0K8N3|RNC_RALEH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|113527293|emb|CAJ93638.1| dsRNA-specific ribonuclease [Ralstonia eutropha H16] Length = 256 Score = 110 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 6/209 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S S + ERLEFLGD +L ++ +L+ F Sbjct: 1 MNLDALQQRLGYRFSKPELLQQALTHRSHS---AQHNERLEFLGDSVLNCAVADMLYGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L+ +R+ K SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLSDTLRLGEGELKSGGFRRPSILADALEAIV 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDAGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKR 209 G H +F V + L G S+R Sbjct: 178 GAAHSQQFEVECTVPKLEVRVFGTGASRR 206 >gi|317506412|ref|ZP_07964217.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974] gi|316255292|gb|EFV14557.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974] Length = 347 Score = 110 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 7/216 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + L IG SLL ALTH S ++ + E + ERLEFLGD +LGL+I+ L+ Sbjct: 114 AELFDSIGVTLQ-ESLLTLALTHRSWANEHGEVPTNERLEFLGDTVLGLVITEQLYVTHP 172 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVES 121 +EGEL+ ++VS + +++AR L L ++ + + + SI AD +E+ Sbjct: 173 DKEEGELAKLRANIVSTISLAEIARRLGKGGLGEYLYLGNGEMRTGGKNKDSILADGLEA 232 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV-TPEYKVTFR 180 L+ A+++ GIE A V ++ + + P Sbjct: 233 LLGAVHIQYGIEKAREVVLHLCAPLLARAARLGAGLDWKTSLQELCARRGLRPPVYEVAE 292 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +GPDH+ FT VV I + G +K+ AE AA Sbjct: 293 AGPDHEKLFTAVVLIEEKSLGTGSGRTKKEAEMKAA 328 >gi|257457873|ref|ZP_05623032.1| ribonuclease III [Treponema vincentii ATCC 35580] gi|257444586|gb|EEV19670.1| ribonuclease III [Treponema vincentii ATCC 35580] Length = 245 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 62/201 (30%), Positives = 102/201 (50%), Gaps = 6/201 (2%) Query: 16 AFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N SLL+ A H S S+ + + + ERLEFLGD +LG++++ L+ EG+L+ Sbjct: 26 KFKNISLLDIAFHHRSFSNEHSDFPINNERLEFLGDSVLGMIVAAELYLAHPEKPEGDLA 85 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 ++VS ++ +A L++ ++ + ++ AD +E+LI ALYLD G Sbjct: 86 KIKAAVVSEDSLFPIALNLNIDKYLMLGHGEEVSGGRKKKALLADALEALIGALYLDSGF 145 Query: 133 EVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 +V FV K + + ++ RD K+ LQE+ K+ + P+Y + GPDHD F Sbjct: 146 KVVQRFVLKIIEPQMQLVEQNKHRYRDYKSLLQEYVQKKYRIIPKYLLVETHGPDHDRVF 205 Query: 190 TVVVEISGLAPAQGMDCSKRA 210 V V I + SK+ Sbjct: 206 QVKVVIKDKEYEPALGKSKKE 226 >gi|254415469|ref|ZP_05029229.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420] gi|196177650|gb|EDX72654.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420] Length = 239 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 11/206 (5%) Query: 16 AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N +L ALTH S + + E ERLEFLGD +LG ++ LL+ + E L+ Sbjct: 18 TIKNETLRLSALTHRSYVNEHPKAGEHNERLEFLGDAVLGFVVGELLYKRYPDVSEAHLT 77 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +LV + ++ A +L + +R+ K+ ++ +D +E+ +AA Y++ GI Sbjct: 78 RLRANLVDEKQLAKFASQLGIGDLMRLGKGADKEGGRQNPALLSDTLEAYMAAYYIESGI 137 Query: 133 EVAGTFVDKYW--------KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + F+ + Q++ K D K Q+WA A F P Y + SG D Sbjct: 138 DAVRQFIYPLFSRVADSIAVQQSDTEPKNLVDPKGRFQQWALANFVENPTYSIIDESGLD 197 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRA 210 H FT V + G G K+ Sbjct: 198 HAKEFTAEVRVKGKVYGVGTGRRKQD 223 >gi|320533365|ref|ZP_08034057.1| ribonuclease III [Actinomyces sp. oral taxon 171 str. F0337] gi|320134435|gb|EFW26691.1| ribonuclease III [Actinomyces sp. oral taxon 171 str. F0337] Length = 264 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 3/194 (1%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL+ ALTH S +H + ERLEFLGD +LG++++ L+ EG+L+ Sbjct: 26 DTQLLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHSEVPEGQLAKMRA 85 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + VS + VAR+L L FI++ SI +D VE+LI A YL G+E Sbjct: 86 ATVSEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETR 145 Query: 137 TFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 T V + + + + A + +GPDH FT + Sbjct: 146 TVVTRLVSRFLDSARTRGAGLDWKTSLQELAAVHQLGNPVYEVAGTGPDHQRVFTASAIV 205 Query: 196 SGLAPAQGMDCSKR 209 G QG SK+ Sbjct: 206 DGEVLGQGTGSSKK 219 >gi|241763850|ref|ZP_04761895.1| Ribonuclease III [Acidovorax delafieldii 2AN] gi|241366894|gb|EER61308.1| Ribonuclease III [Acidovorax delafieldii 2AN] Length = 227 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 75/211 (35%), Positives = 110/211 (52%), Gaps = 6/211 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S L+ R+ + F+N SLL++A+TH S S + ERLEFLGD +L L +++LL+ Sbjct: 5 LSALQDRLQHHFSNASLLQRAITHRSFS---ADHNERLEFLGDSVLNLAVASLLYQRLSD 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS +LV +T Q+A L ++ +R+ K SI AD +E+LI A Sbjct: 62 LPEGDLSRVRANLVKQDTLHQLALRLQVSDVLRLGEGESKSGGQNRPSILADALEALIGA 121 Query: 126 LYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G A V + ++ + + +D KT LQEW + P Y V G Sbjct: 122 VYLDAGYSRAEALVHRLFQGVEINPQMQAAAKDPKTALQEWLQGRKMKLPHYSVVATVGA 181 Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 H F V EI+ L A+ G+ S+RA EQ Sbjct: 182 AHRQTFDVECEIAELGLAERGIGGSRRAGEQ 212 >gi|17227776|ref|NP_484324.1| ribonuclease III [Nostoc sp. PCC 7120] gi|22654062|sp|Q8Z023|RNC_ANASP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|17135258|dbj|BAB77804.1| ribonuclease III [Nostoc sp. PCC 7120] Length = 228 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 84/202 (41%), Gaps = 8/202 (3%) Query: 17 FANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F + LL +ALTH S + E ERLEFLGD IL L L+ E EL+ Sbjct: 7 FRDDKLLRRALTHRSYVNENPEEGEHNERLEFLGDAILNFLSGEYLYRSHPDRGEDELTR 66 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 R ++LV + ++ A E+ L +R+ +D ++ + E++I A YLD Sbjct: 67 RRSALVDEKQLAKFAIEVGLDFKMRLGKGAIRDGGYQNPNLLSSTFEAVIGAYYLDNNSN 126 Query: 134 VA----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPR 188 + + + D+K QEW G TP +T + G H P Sbjct: 127 IEAVRAIIEPLFESVPEQIVVVRSNVDSKNRFQEWVQRNIGPTPPKYLTEQIGGFSHAPE 186 Query: 189 FTVVVEISGLAPAQGMDCSKRA 210 F V + +G+ +K+ Sbjct: 187 FKATVLVGEKEYGEGIGKNKKD 208 >gi|149913470|ref|ZP_01902003.1| 4'-phosphopantetheinyl transferase [Roseobacter sp. AzwK-3b] gi|149812590|gb|EDM72419.1| 4'-phosphopantetheinyl transferase [Roseobacter sp. AzwK-3b] Length = 227 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 79/209 (37%), Positives = 117/209 (55%), Gaps = 1/209 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + E+R+G+ F +LL +A+THSS++ ++ +RLEFLGDR+LGL+++ L Sbjct: 1 MKLSAELKAFEERLGHRFEQSALLVRAVTHSSMASPTRDDNQRLEFLGDRVLGLVMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 SA+EG L+ RFN+LV E C+ VARE+ L +++ ++ D + Sbjct: 61 LERDRSAEEGLLAPRFNALVRKEACADVAREIALGDVLKLGRSEMLSGGRRKQALLGDAM 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+Y D G +VA V + W +R + RDAKT LQEWA A+ P Y T Sbjct: 121 EAVIAAVYRDAGFDVAKAVVLRLWGKRIDSVKEDARDAKTALQEWAQARGQTPPAYVETA 180 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 RSGPDH P+FT+ + SK Sbjct: 181 RSGPDHAPQFTIEARLQNGEVETASAGSK 209 >gi|281358070|ref|ZP_06244554.1| ribonuclease III [Victivallis vadensis ATCC BAA-548] gi|281315443|gb|EFA99472.1| ribonuclease III [Victivallis vadensis ATCC BAA-548] Length = 232 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 5/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 L+KR+G+A + L +A+TH S + +RLEFLGD +L ++++ LF+ Sbjct: 4 NIEELKKRLGFAGPWSNRLAEAVTHRSYAVENNLGYDNQRLEFLGDAVLEIILTEYLFHL 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A EGE++ ++LV +++AR +L ++ + S AD+ E++ Sbjct: 64 YPDAAEGEMTKIRSALVREPALARLARRFELGEYLLTGRGEHDSGGADRDSTLADLFEAV 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A YLD G + FV + + K +LQE++ +G+TP+Y + Sbjct: 124 LGAFYLDAGFDATRQFVTGLIRDEYPDPRSLLTSINPKGQLQEYSQRHWGLTPKYSILHT 183 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP+H P + V V +S A G +++AAE AA ++ + Sbjct: 184 SGPEHLPVYEVEVRLS-RYNAVGRAANRKAAEGDAARQLYRYL 225 >gi|306823678|ref|ZP_07457053.1| ribonuclease III [Bifidobacterium dentium ATCC 27679] gi|309802879|ref|ZP_07696980.1| ribonuclease III [Bifidobacterium dentium JCVIHMP022] gi|304553385|gb|EFM41297.1| ribonuclease III [Bifidobacterium dentium ATCC 27679] gi|308220346|gb|EFO76657.1| ribonuclease III [Bifidobacterium dentium JCVIHMP022] Length = 294 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 62/210 (29%), Positives = 93/210 (44%), Gaps = 6/210 (2%) Query: 20 RSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 LL +ALTH S SH + ++YERLEFLGD +L L+ + L+ EG+L+ Sbjct: 81 PELLVEALTHRSFSHEHPGAKNYERLEFLGDAVLELVSTETLYAAHPDMTEGQLAKMRAK 140 Query: 78 LVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 VS E+ S +AR +L + +I + + + + +SI D+VESLI A ++ GI+ A Sbjct: 141 AVSEESLSHIAREKLHVGPYILLGNGEAEQHGAEKSSILCDIVESLIGATFIQHGIDEAR 200 Query: 137 TFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V A + + G+ Y SGP++ FT + Sbjct: 201 KVVHHLVDDTLAEVATEGPALDWKTSLTVKAHDMGLGEPYYRMSVSGPEYAQVFTAKAML 260 Query: 196 SG--LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G G SKR A+ AA K Sbjct: 261 EGSDEVIGIGKGSSKRKAQLAAAEAGWKAL 290 >gi|283455260|ref|YP_003359824.1| ribonuclease III [Bifidobacterium dentium Bd1] gi|283101894|gb|ADB09000.1| rncS Ribonuclease III [Bifidobacterium dentium Bd1] Length = 294 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 62/210 (29%), Positives = 93/210 (44%), Gaps = 6/210 (2%) Query: 20 RSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 LL +ALTH S SH + ++YERLEFLGD +L L+ + L+ EG+L+ Sbjct: 81 PELLVEALTHRSFSHEHPGAKNYERLEFLGDAVLELVSTETLYAAHPDMTEGQLAKMRAK 140 Query: 78 LVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 VS E+ S +AR +L + +I + + + + +SI D+VESLI A ++ GI+ A Sbjct: 141 AVSEESLSHIAREKLHVGPYILLGNGEAEQHGAEKSSILCDIVESLIGATFIQHGIDEAR 200 Query: 137 TFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V A + + G+ Y SGP++ FT + Sbjct: 201 KVVHHLVDDTLAEVATEGPALDWKTSLTVKAHDMGLGEPYYRMSVSGPEYAQVFTAKAML 260 Query: 196 SG--LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G G SKR A+ AA K Sbjct: 261 EGSDEVIGIGKGSSKRKAQLAAAEAGWKAL 290 >gi|171741390|ref|ZP_02917197.1| hypothetical protein BIFDEN_00473 [Bifidobacterium dentium ATCC 27678] gi|171277004|gb|EDT44665.1| hypothetical protein BIFDEN_00473 [Bifidobacterium dentium ATCC 27678] Length = 229 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 62/210 (29%), Positives = 93/210 (44%), Gaps = 6/210 (2%) Query: 20 RSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 LL +ALTH S SH + ++YERLEFLGD +L L+ + L+ EG+L+ Sbjct: 16 PELLVEALTHRSFSHEHPGAKNYERLEFLGDAVLELVSTETLYAAHPDMTEGQLAKMRAK 75 Query: 78 LVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 VS E+ S +AR +L + +I + + + + +SI D+VESLI A ++ GI+ A Sbjct: 76 AVSEESLSHIAREKLHVGPYILLGNGEAEQHGAEKSSILCDIVESLIGATFIQHGIDEAR 135 Query: 137 TFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V A + + G+ Y SGP++ FT + Sbjct: 136 KVVHHLVDDTLAEVATEGPALDWKTSLTVKAHDMGLGEPYYRMSVSGPEYAQVFTAKAML 195 Query: 196 SG--LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G G SKR A+ AA K Sbjct: 196 EGSDEVIGIGKGSSKRKAQLAAAEAGWKAL 225 >gi|225453660|ref|XP_002268369.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1971 Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 83/236 (35%), Gaps = 18/236 (7%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ + TLE + F NR LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1629 SVNFDTLEGALNIKFNNRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFT 1688 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD----- 117 + G L+ + V+ E ++VA + L +R S + D Sbjct: 1689 YTDLPPGRLTDLRAAAVNNENFARVAVKHKLHIHLRHGSSALEKQIRDFVKEVQDELSKP 1748 Query: 118 --------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 ++ + I A K + + Sbjct: 1749 GFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHPV 1808 Query: 170 GVTPEYKVTFRSGPDHDPRF-----TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E G ++ TV V I G+ + K+ A+++AA L Sbjct: 1809 RELQERCQQQAEGLEYKATRSGNLATVEVFIDGVQIGIAQNPQKKMAQKLAARNAL 1864 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 1413 QLKDVINYPVPAAKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1469 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1470 EGQLTRMRQQMVSNMVLYQSALCKGLQSYIQ 1500 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 6/75 (8%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAA 211 + L + + P Y+ GP H RFT V ++ + + S + A Sbjct: 1895 RQTLNDICLRRNWPMPVYRCVNEGGPAHAKRFTFAVRVNTNDKGWTDECIGEPMPSVKKA 1954 Query: 212 EQVAAAEVLKREGIW 226 + AA +L+ W Sbjct: 1955 KDSAAVLLLELLNKW 1969 >gi|256419408|ref|YP_003120061.1| ribonuclease III [Chitinophaga pinensis DSM 2588] gi|256034316|gb|ACU57860.1| ribonuclease III [Chitinophaga pinensis DSM 2588] Length = 253 Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 88/220 (40%), Gaps = 1/220 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y L +G+A N SL E AL+H S + ES ERLE+LGD ILG +I LF + Sbjct: 32 YKDLYNLLGFAPGNFSLYEVALSHRSSKEKFLESNERLEYLGDAILGAIIGDYLFKKYPY 91 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG L+ + +V+ + + +A ++ L S + + + + Sbjct: 92 KTEGYLTEMRSKIVNRQQLNDIAIKMGLRKLTIYDKYNSFLKISQIFGNTLEALVGAVYL 151 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 + + + K +L WA+ G T E+ + + Sbjct: 152 DKGYNRTKQFVHQRLIVPYIDLEQLENVEMNHKNKLYGWANK-HGKTLEFDLLEEQMDNG 210 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 FTV + G G +K+ A Q+AA + ++ G+ Sbjct: 211 RRIFTVGAVVDGELICSGKAFNKKDASQIAAQQAIELLGL 250 >gi|168010516|ref|XP_001757950.1| dsRNA-specific nuclease dicer and related ribonuclease [Physcomitrella patens subsp. patens] gi|162690827|gb|EDQ77192.1| dsRNA-specific nuclease dicer and related ribonuclease [Physcomitrella patens subsp. patens] Length = 1662 Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 28/243 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ + +LE IG+ F RSLL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1316 MLSIDFDSLEASIGHKFRKRSLLVEAITHASRPSSGVPCYQRLEFVGDAVLDYLITRFLF 1375 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111 + G L+ + V+ E ++VA + +R S + Sbjct: 1376 FKYTDLPPGRLTDLRAAAVNNENFARVAVKHSFHLHLRHGSSALETQIRNFVNDIQTELD 1435 Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + D++ES+ AL+LD +E V K ++ Sbjct: 1436 KPGVNSFGLGDFKAPKVLGDILESIAGALFLDACLETDH--VWKVFEPLLQPMVTPETLP 1493 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 ++E + + TV V + G+ + K+ A+++AA Sbjct: 1494 MHPVRELQERCQQQAEALEYKASRAGNVA---TVEVYVDGVQIGSAQNAQKKMAQKLAAR 1550 Query: 218 EVL 220 L Sbjct: 1551 NAL 1553 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ +I Y A +L +ALT +S ++ SYER E LGD L ++S LF + Sbjct: 1095 QLKHQIDYPIAASKVL-EALTAASCQETF--SYERAELLGDAYLKWVVSRRLFLKYPCKH 1151 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A + L S+I+ Sbjct: 1152 EGQLTRMRQQIVSNSVLYQYALDKGLQSYIQ 1182 >gi|154486628|ref|ZP_02028035.1| hypothetical protein BIFADO_00445 [Bifidobacterium adolescentis L2-32] gi|154084491|gb|EDN83536.1| hypothetical protein BIFADO_00445 [Bifidobacterium adolescentis L2-32] Length = 298 Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 7/221 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L + +G LL +ALTH S SH ++ ++YERLEFLGD +L L+ + L+ Sbjct: 42 LLEALGTTIE-PDLLVEALTHRSFSHEHEGAKNYERLEFLGDAVLELVSTETLYKVHPDM 100 Query: 67 KEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ VS E+ S++AR +L + +I + + + +SI D+VESLI A Sbjct: 101 NEGQLAKMRAKAVSEESLSKIAREKLHVGPYILLGHGEAEQGGADKSSILCDIVESLIGA 160 Query: 126 LYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 ++ GI+ A V A + + + G+ + T +GP+ Sbjct: 161 TFIQHGIDEARRVVHHLVDDTLAEVATEGPALDWKTSLTVKAHEMGLPDPHYQTSVAGPE 220 Query: 185 HDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G G SKR A+ AA K Sbjct: 221 YALEFTARAILGDGGEVIGVGTGSSKRKAQLAAAEMGWKAL 261 >gi|119025240|ref|YP_909085.1| ribonuclease III [Bifidobacterium adolescentis ATCC 15703] gi|118764824|dbj|BAF39003.1| ribonuclease III [Bifidobacterium adolescentis ATCC 15703] Length = 262 Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 7/221 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L + +G LL +ALTH S SH ++ ++YERLEFLGD +L L+ + L+ Sbjct: 6 LLEALGTTIE-PDLLVEALTHRSFSHEHEGAKNYERLEFLGDAVLELVSTETLYKVHPDM 64 Query: 67 KEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+L+ VS E+ S++AR +L + +I + + + +SI D+VESLI A Sbjct: 65 NEGQLAKMRAKAVSEESLSKIAREKLHVGPYILLGHGEAEQGGADKSSILCDIVESLIGA 124 Query: 126 LYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 ++ GI+ A V A + + + G+ + T +GP+ Sbjct: 125 TFIQHGIDEARRVVHHLVDDTLAEVATEGPALDWKTSLTVKAHEMGLPDPHYQTSVAGPE 184 Query: 185 HDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + FT + G G SKR A+ AA K Sbjct: 185 YALEFTARAILGDGGEVIGVGTGSSKRKAQLAAAEMGWKAL 225 >gi|296393287|ref|YP_003658171.1| ribonuclease III [Segniliparus rotundus DSM 44985] gi|296180434|gb|ADG97340.1| ribonuclease III [Segniliparus rotundus DSM 44985] Length = 338 Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 69/217 (31%), Positives = 110/217 (50%), Gaps = 9/217 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 L + +G + SL+ ALTH S ++ + E + ERLEFLGD +LGL+++ L+ Sbjct: 105 EELFESLGVTLQD-SLMTLALTHRSWANEHGEVPTNERLEFLGDTVLGLVVTEQLYVTHP 163 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVES 121 +EGEL+ ++VS + +++AR L L ++ + + + SI AD +E+ Sbjct: 164 DKEEGELAKLRANIVSTASLAEIARRLGKGGLGEYLYLGNGEVRTGGKNKDSILADGLEA 223 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A+++ GIE A V ++ + D KT LQE + P Y+VT Sbjct: 224 VIGAVHIQYGIEKAREVVLALCAPLLARAARLGAGLDWKTSLQELCARRGLRPPVYEVTE 283 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH+ FT VV I + G +K+ AE AA Sbjct: 284 A-GPDHEKLFTAVVLIEEKSLGTGSGRTKKEAEMKAA 319 >gi|120609884|ref|YP_969562.1| ribonuclease III [Acidovorax citrulli AAC00-1] gi|120588348|gb|ABM31788.1| RNAse III [Acidovorax citrulli AAC00-1] Length = 228 Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 75/216 (34%), Positives = 107/216 (49%), Gaps = 6/216 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + S L+ R+ + F++ SLL++A TH S S + ERLEFLGD +L L +S+LL+ Sbjct: 1 MVSPSLSALQDRLQHVFSDPSLLQRATTHRSFS---ADHNERLEFLGDSVLNLAVSSLLY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EG+LS +LV E +A L L +R+ K SI AD +E Sbjct: 58 QRLRDLPEGDLSRVRANLVRQEALHSLALGLQLPQVLRLGEGETKSGGKQRPSILADALE 117 Query: 121 SLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+YLD G + A V + + +DAKT LQEW + P+Y+V Sbjct: 118 ALIGAVYLDAGYQCAEALVHRLYQDVEINPRMPAAEKDAKTALQEWLQGRKMKLPQYRVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 G H F V +I L + G+ S+RA EQ Sbjct: 178 ATVGAAHRQTFDVECDIPELGLTERGIGGSRRAGEQ 213 >gi|295690019|ref|YP_003593712.1| ribonuclease III [Caulobacter segnis ATCC 21756] gi|295431922|gb|ADG11094.1| ribonuclease III [Caulobacter segnis ATCC 21756] Length = 231 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 123/204 (60%), Gaps = 3/204 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65 LE+RIG+ F +R LLE+ALTH+S+ ++ E LEF+GDR+LGLL + L F Sbjct: 10 DLERRIGHQFEDRELLERALTHASVGDGAKKVRDNEVLEFIGDRVLGLLAAEALAQRFPK 69 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 AKEGEL+ R N+LVS ETC++VAR +L +R+S+ K SI A E+L+AA Sbjct: 70 AKEGELAPRLNALVSRETCARVARVAELGPALRLSASSSKIGGRETESILAGATEALMAA 129 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LY DGG++ A W ++G+ RD KT LQEWA K P Y+V R+GPD Sbjct: 130 LYQDGGLDAARRVFLSLWADEFDRAGEGRPRDPKTALQEWAQGKGRPLPTYRVLDRTGPD 189 Query: 185 HDPRFTVVVEISGLAPAQGMDCSK 208 H P FTV V ++G+ PA S+ Sbjct: 190 HAPVFTVEVVVAGVDPAMAKGKSR 213 >gi|156359582|ref|XP_001624846.1| predicted protein [Nematostella vectensis] gi|156211649|gb|EDO32746.1| predicted protein [Nematostella vectensis] Length = 917 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 101/226 (44%), Gaps = 15/226 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 + E+ G F + LL +A TH + + +RLEFLGD +L ++S L+ H Sbjct: 677 KLVEFEEGSGIPFTHIRLLARAFTHPQVGKNNLTLGDNQRLEFLGDSVLQFVVSVFLYQH 736 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV++ + +++AR+L+L FI + + ADV+E+L Sbjct: 737 FPDHHEGHLTLLRSSLVNSRSQAEIARQLNLQEFINTGPT------NVREKMLADVLEAL 790 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ-------RALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 IAA+++D G+ F + + + L K P Y Sbjct: 791 IAAVFVDKGLRHVEVFCRVCFFSRLEDSIVNQEWIDSKSQLQQCCLAMRTEGKSPDLPIY 850 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ +GP H ++ V V G +G S AE AA + L+ Sbjct: 851 RILQDAGPAHHKKYQVGVYFQGTRCGKGEGSSIHQAEMAAAKDALE 896 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 80/216 (37%), Gaps = 55/216 (25%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYER--------------------- 42 TL+ ++GY F +R LL+ AL+H S ++ + R Sbjct: 447 LRTLDAKLGYTFKDRMLLQLALSHPSYHLNYGMNPDHARNSLSNCGVKQPRYGDRRIHNV 506 Query: 43 --------------------------------LEFLGDRILGLLISTLLFNHFDSAKEGE 70 LEFLGD +L L+ S LF EG Sbjct: 507 HSKKKGITHLVRVMANLGKVEEDRSMIRHNERLEFLGDAVLELICSKHLFFMLPDMDEGH 566 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ ++LV + +A+ LDL+ +++ S + A+ +E+L+ A+YL+ Sbjct: 567 LATFRSALVQNRHLALLAKMLDLSDYMQFSHGPDLCQEDDLNHAMANCLEALLGAVYLEA 626 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 G++VA + K+ K LQ+ Sbjct: 627 GLQVATELFSRLAFTEQDLYDKWMELPKHRLQDQEP 662 >gi|260432756|ref|ZP_05786727.1| ribonuclease III [Silicibacter lacuscaerulensis ITI-1157] gi|260416584|gb|EEX09843.1| ribonuclease III [Silicibacter lacuscaerulensis ITI-1157] Length = 226 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 84/210 (40%), Positives = 120/210 (57%), Gaps = 3/210 (1%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + +KR+G+ FAN LL +ALTH S+S + + +RLEFLGDR+LGL++++ L Sbjct: 1 MKLSADMKAFQKRLGHQFANPELLVRALTHGSVSSATRPDNQRLEFLGDRVLGLVMASAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-SFMTSIQADV 118 +A EG+L+ RFN+LV ETC+ VAR++DL + +++ ++ D Sbjct: 61 LEADKTATEGQLAPRFNALVRKETCADVARQIDLGAVLKLGRS-EMMSGGRRKQALLGDA 119 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +E++IAA+Y D G E A V K W R + RDAKT LQEWA A+ P Y Sbjct: 120 MEAVIAAVYRDAGFEAARDVVLKLWGDRLHQVKADARDAKTALQEWAQARGQKPPSYVEL 179 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 R+GPDH P FT+V + AQ SK Sbjct: 180 SRTGPDHAPVFTIVARLESGPEAQATAPSK 209 >gi|326773636|ref|ZP_08232919.1| ribonuclease III [Actinomyces viscosus C505] gi|326636866|gb|EGE37769.1| ribonuclease III [Actinomyces viscosus C505] Length = 264 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 3/194 (1%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL+ ALTH S +H + ERLEFLGD +LG++++ L+ EG+L+ Sbjct: 26 DAHLLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHPEVPEGQLAKMRA 85 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + VS + VAR+L L FI++ SI +D VE+LI A YL G+E Sbjct: 86 ATVSEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETR 145 Query: 137 TFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 T V + + + + A + +GPDH FT + Sbjct: 146 TVVTRLVSRFLDSARTRGAGLDWKTSLQELTAVHQLGNPAYEVTGTGPDHQRVFTASAIV 205 Query: 196 SGLAPAQGMDCSKR 209 G QG SK+ Sbjct: 206 DGEVLGQGTGSSKK 219 >gi|333029521|ref|ZP_08457582.1| Ribonuclease 3 [Bacteroides coprosuis DSM 18011] gi|332740118|gb|EGJ70600.1| Ribonuclease 3 [Bacteroides coprosuis DSM 18011] Length = 276 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 95/227 (41%), Gaps = 5/227 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 Y + +G+ + ++AL H S + ++ + ERLEFLGD +L +++ Sbjct: 16 EKKSYLLFYQMLGFVPNDLRYYQQALIHKSSTKVSKDGYYQNNERLEFLGDAVLDAVVAD 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LLF++FD KEG L+ + +V ET +++A E+ L I S+ + Sbjct: 76 LLFHYFDEKKEGFLTNTRSKIVQRETLNKLAVEIGLDKHIIFSTKSSSHNNYMFGNAFEA 135 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ++ ++ + + + + + K++L EW + Sbjct: 136 LIGAIYLDQGYKKCKAFIEQRIIDQFLDLDRLA-QTELNFKSKLIEWGQKNKYKITFELI 194 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +P F V + G++ +G+ SK+ ++Q A+ + L + Sbjct: 195 EEFQDEQSNPVFQTEVLVEGISGGRGVGYSKKESQQNASEKTLDKIN 241 >gi|329947035|ref|ZP_08294447.1| ribonuclease III [Actinomyces sp. oral taxon 170 str. F0386] gi|328526846|gb|EGF53859.1| ribonuclease III [Actinomyces sp. oral taxon 170 str. F0386] Length = 267 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 3/195 (1%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL+ ALTH S +H + ERLEFLGD +LG++++ L+ + EG+L+ Sbjct: 26 DAGLLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHATVPEGQLAKMRA 85 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + VS + VAR+L L FI++ SI +D VE+LI A YL G+E Sbjct: 86 ATVSEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETR 145 Query: 137 TFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 T V + + + + A + +GPDH FT + Sbjct: 146 TVVTRLVSRFLDSARTRGAGLDWKTSLQELTAAHQLGNPGYEVSGTGPDHQRVFTASAVV 205 Query: 196 SGLAPAQGMDCSKRA 210 G +G SK+ Sbjct: 206 DGQVMGRGTGSSKKI 220 >gi|225010255|ref|ZP_03700727.1| Ribonuclease III [Flavobacteria bacterium MS024-3C] gi|225005734|gb|EEG43684.1| Ribonuclease III [Flavobacteria bacterium MS024-3C] Length = 256 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 52/213 (24%), Positives = 92/213 (43%), Gaps = 6/213 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +G+ N S+ +KA H S+ +YERLEFLGD +LG +IS ++N +A Sbjct: 36 NILGFKPKNLSIYKKAFIHRSLHLKDPQGNPLNYERLEFLGDAMLGAIISKYIYNEVPAA 95 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ + +VS E +++ +EL+L SF+ + ++ +V ++ Sbjct: 96 DEGYLTKMRSKIVSREHLNELGKELNLLSFVDSKVHKDHFGDNVHGNVFEALVGAIYLDR 155 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + + A GK ++ K T +++ SG D Sbjct: 156 GYKYCENFIYLKIIEPHVDLAKLEGKVTSYKSLLIEWCQKEK--KTFNFQIFEDSGNDPI 213 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 F+V + I+ ++G SK+ AE+ AA Sbjct: 214 KHFSVRLAINKKVISKGRGPSKKKAEEQAAKRA 246 >gi|119962673|ref|YP_948196.1| ribonuclease III (RNase III) [Arthrobacter aurescens TC1] gi|119949532|gb|ABM08443.1| putative ribonuclease III (RNase III) [Arthrobacter aurescens TC1] Length = 236 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 64/212 (30%), Positives = 94/212 (44%), Gaps = 6/212 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 MS+ L KR+G + + L ALTH S ++ + ERLEFLGD ILG ++ Sbjct: 1 MSST--EELLKRLGVSI-DTETLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDS 57 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ S EGEL+ R +++VS + + RE+ + FI + + SI AD Sbjct: 58 LYRENPSLPEGELAKRRSAVVSTRALAGIGREIGVGEFIYLGQGEKLTDGKNKASILADT 117 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A YL IE A V + +G + A + + Sbjct: 118 MEALIGATYLSNDIETARQLVMRLVGPLLKDAGALGAGTDWKTSIQELTASRQLGAIHYA 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SGPDH F V+ I G +G SK+ Sbjct: 178 VEGSGPDHARTFEAVLNIGGTPYGRGSGHSKK 209 >gi|145224771|ref|YP_001135449.1| ribonuclease III [Mycobacterium gilvum PYR-GCK] gi|315445101|ref|YP_004077980.1| RNAse III [Mycobacterium sp. Spyr1] gi|145217257|gb|ABP46661.1| RNAse III [Mycobacterium gilvum PYR-GCK] gi|315263404|gb|ADU00146.1| RNAse III [Mycobacterium sp. Spyr1] Length = 234 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 99/228 (43%), Gaps = 7/228 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 + + L K +G LL ALTH S S+ + ERLEFLGD +LGL I+ L Sbjct: 1 MTVDRALLLKALGIDLP-AELLTIALTHRSYSYENGGVPTNERLEFLGDSVLGLTITEEL 59 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQA 116 ++ EG+L+ S+V+ + + V R L L +++ + + +SI A Sbjct: 60 YHRHPDRSEGDLAKLRASIVNTQALADVGRNLSEHGLGAYLLLGKGEENSGGADKSSILA 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEY 175 D VESL+ A+YL+ G A + + + + + A + Sbjct: 120 DGVESLLGAIYLEHGAVAAREVILRLFSDLLDTAPTLGAGLDWKSSLQELTASLALGAPS 179 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GPDHD FT VV I+ G+ +K+ AE AA+ Sbjct: 180 YHVTSTGPDHDKEFTAVVIIAEREHGTGVGRTKKEAELKAASAAWNAL 227 >gi|256842428|ref|ZP_05547931.1| ribonuclease III [Parabacteroides sp. D13] gi|262384660|ref|ZP_06077793.1| ribonuclease III [Bacteroides sp. 2_1_33B] gi|256736035|gb|EEU49366.1| ribonuclease III [Parabacteroides sp. D13] gi|262293641|gb|EEY81576.1| ribonuclease III [Bacteroides sp. 2_1_33B] Length = 280 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L K +G+ N + E+AL H S S + + ERLEFLGD IL ++ +++ Sbjct: 24 YLSLSKILGFYPDNLQIYEQALLHKSSSVETGDGKWLNNERLEFLGDGILDAAVADIVYK 83 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + +EG L+ + +V ET ++VA +L L + S+ + + ++ + Sbjct: 84 RYPNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYSTKINSHNNHMYGNALEALIGA 143 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + D + + + + + K K+ L EW+ + + Sbjct: 144 IYLDQGYDVCYKFIRDVMIEKYIDVDMLVRKEINF-KSNLIEWSQKNKISISFDLIESFT 202 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D +P F +++ G G+ SK+ ++Q A+ +KR Sbjct: 203 DHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKRL 244 >gi|150009420|ref|YP_001304163.1| ribonuclease III [Parabacteroides distasonis ATCC 8503] gi|298377793|ref|ZP_06987743.1| ribonuclease III [Bacteroides sp. 3_1_19] gi|149937844|gb|ABR44541.1| ribonuclease III [Parabacteroides distasonis ATCC 8503] gi|298265239|gb|EFI06902.1| ribonuclease III [Bacteroides sp. 3_1_19] Length = 280 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L K +G+ N + E+AL H S S + + ERLEFLGD IL ++ +++ Sbjct: 24 YLSLSKILGFYPDNLQIYEQALLHKSSSVETGDGKWLNNERLEFLGDGILDAAVADIVYK 83 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + +EG L+ + +V ET ++VA +L L + S+ + + ++ + Sbjct: 84 RYPNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYSTKINSHNNHMYGNALEALIGA 143 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + D + + + + + K K+ L EW+ + + Sbjct: 144 IYLDQGYDVCYKFIRDVMIEKYIDVDMLVRKEINF-KSNLIEWSQKNKISISFDLIESFT 202 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D +P F +++ G G+ SK+ ++Q A+ +KR Sbjct: 203 DHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKRL 244 >gi|326798772|ref|YP_004316591.1| ribonuclease 3 [Sphingobacterium sp. 21] gi|326549536|gb|ADZ77921.1| Ribonuclease 3 [Sphingobacterium sp. 21] Length = 243 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 99/226 (43%), Gaps = 9/226 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHF 63 L+ +G+ N L + A H S++ + S ERLEFLGD ILG +++ LLF + Sbjct: 20 ALKNLLGFIPGNLYLYQMAFRHKSVAVQVKKGTKNSNERLEFLGDAILGAVVAELLFKMY 79 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ + +VS +Q+AR+L I+ S + S+ D E+LI Sbjct: 80 PYKDEGFLTEMRSKIVSRVHLNQLARKLGFDELIQYDSKMVGYPGKSS-SLLGDAFEALI 138 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 A+YLD G F+ + + + + K+ L EW + Sbjct: 139 GAVYLDKGYMFTRNFLLSRIIKPHVDIHLLEQTETNFKSRLIEWCQSTGNEVLFEVANNA 198 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 G FTV ISG G D +K+ AE++AA + + GI Sbjct: 199 EGES-AKLFTVEAIISGEVRGTGRDYNKKNAEKLAAEKACEALGII 243 >gi|239814409|ref|YP_002943319.1| ribonuclease III [Variovorax paradoxus S110] gi|259646554|sp|C5CSF5|RNC_VARPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|239800986|gb|ACS18053.1| ribonuclease III [Variovorax paradoxus S110] Length = 228 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 112/222 (50%), Gaps = 6/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + L++R+ ++F++ LL+ ALTH S S + ERLEFLGD +L L +S LL+ + Sbjct: 5 LTALQERLKHSFSDTRLLQLALTHRSFS---ADHNERLEFLGDSVLNLAVSHLLYTRLSA 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS +LV +T ++A EL L+ +R+ + SI AD +E+LI A Sbjct: 62 LPEGDLSRVRANLVKQDTLHRLALELQLSPLLRLGEGEARSGGPNRPSILADALEALIGA 121 Query: 126 LYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G A + + +D KTELQEW P Y+V G Sbjct: 122 VYLDAGFSAAEALVRRLYESVEINPRMDAVAKDPKTELQEWLQGHKMKLPVYRVAATLGA 181 Query: 184 DHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224 H F V E+ L +G+ S+RA EQ AAA +L R Sbjct: 182 AHKQTFDVECEVPELGLRERGIGGSRRAGEQAAAAAMLIRLK 223 >gi|187477630|ref|YP_785654.1| ribonuclease III [Bordetella avium 197N] gi|123514189|sp|Q2KWY0|RNC_BORA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|115422216|emb|CAJ48740.1| ribonuclease III [Bordetella avium 197N] Length = 251 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 70/213 (32%), Positives = 108/213 (50%), Gaps = 6/213 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +TLE R+G+ F +++LLE+ALTH S ERLEFLGD +L +++ +LF + Sbjct: 1 MSLATLETRLGHHFGDQALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLFERY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + + +A+ L+L+ ++R+ K SI AD VE+L Sbjct: 58 AKLDEGDLSRVRANLVKQASLADIAQRLELSPYLRLGEGEMKSGGFRRPSILADAVEALF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A +++ + +DAKT LQE+ + P Y V Sbjct: 118 GAVFLDAGFDAARKVIEQQYVPVLANVDPETLGKDAKTLLQEFLQGRKLALPLYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213 G H +F V I L S+RAAEQ Sbjct: 178 GAAHSQQFEVECAIPALEIKVTAAGASRRAAEQ 210 >gi|325068495|ref|ZP_08127168.1| ribonuclease III [Actinomyces oris K20] Length = 264 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 3/194 (1%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL+ ALTH S +H + ERLEFLGD +LG++++ L+ EG+L+ Sbjct: 26 DAQLLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHPEVPEGQLAKMRA 85 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + VS + VAR+L L FI++ SI +D VE+LI A YL G+E Sbjct: 86 ATVSEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETR 145 Query: 137 TFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 T V + + + + A + +GPDH FT + Sbjct: 146 TVVTRLVSRFLDSARTRGAGLDWKTSLQELTAVHQLGNPAYEVTGTGPDHQRVFTASAIV 205 Query: 196 SGLAPAQGMDCSKR 209 G QG SK+ Sbjct: 206 DGEVLGQGTGSSKK 219 >gi|332878384|ref|ZP_08446107.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683649|gb|EGJ56523.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 262 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 3/222 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFN 61 + Y+ ++ +GYA N S +A TH S + ++SYERLEFLGD ILG +I+ +F Sbjct: 31 IFYNKMKDLLGYAPKNLSFYSEAFTHPSYQYQKATRKSYERLEFLGDAILGAVIADYIFT 90 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + +V +Q+ EL L SF+R ++ + ++ ++ + Sbjct: 91 NAPEQDEGYLTKMRSKIVERRNLNQLGEELQLLSFLRTKLTPKQLGNNITGNLFEALIGA 150 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + + + + K K+ L EW Sbjct: 151 IYLDKGYKTCFKFIERKLILPYINIKNLEEKVISH-KSLLIEWCQKHKRDFSFEAEEDVE 209 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + G + + SK+ AE+ AA + Sbjct: 210 DRSETKYFVAKVYVEGFSVTRARATSKKRAEESAAKRTCYKI 251 >gi|213963479|ref|ZP_03391733.1| ribonuclease III [Capnocytophaga sputigena Capno] gi|213953887|gb|EEB65215.1| ribonuclease III [Capnocytophaga sputigena Capno] Length = 252 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 88/222 (39%), Gaps = 3/222 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFN 61 + Y+ ++ +G+A N S +A TH S + ++SYERLEFLGD ILG +I+ +F Sbjct: 21 IFYNKIKNLLGFAPKNLSYYSEAFTHPSYQFQKATRKSYERLEFLGDAILGAVIADYIFT 80 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + +V +Q+ +++ L F+R R+ + ++ ++ + Sbjct: 81 NAPEQDEGYLTKMRSKIVERRNLNQLGKDMGLLDFLRTKLTPRQLGNNITGNLFEALIGA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + + GK K+ L EW Sbjct: 141 IYLDRGYKACFRFIERELILPHINIKNLEGKVISH-KSLLIEWCQKHKLDFAFEAEEDME 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + G + + SK+ AE++AA + Sbjct: 200 DRSETKYFVAKVHVQGFSVTRARSTSKKKAEEIAAKRACYKI 241 >gi|330721516|gb|EGG99556.1| Ribonuclease III [gamma proteobacterium IMCC2047] Length = 210 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 104/208 (50%), Gaps = 6/208 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + + L + +GY F + SLL+ ALTHSS + ERLEFLGD ILG +I+ LF Sbjct: 1 MSQDLAKLSQSLGYQFRDESLLQTALTHSSFGQGH---NERLEFLGDSILGWVIADALFK 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F A+EG+LS LV T ++VAREL L ++R+ K SI AD E+ Sbjct: 58 RFPHAREGQLSRLRAGLVKGVTLAKVARELQLGHYLRLGQGEMKSGGFRRDSILADAFEA 117 Query: 122 LIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +I A++LD I + + A +D KT LQE+ ++ P+Y++ Sbjct: 118 IIGAIFLDSDIATCQQIILVLFAGRLDAQTLDDTLKDPKTRLQEFLQSRKQPLPDYRILS 177 Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDC 206 SG DH+ F V E+ + P + Sbjct: 178 TSGKDHEQVFRVACEVESIAEPFEAEGT 205 >gi|118470776|ref|YP_886758.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155] gi|118172063|gb|ABK72959.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155] Length = 230 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 95/209 (45%), Gaps = 6/209 (2%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL ALTH S S+ + ERLEFLGD +LGL I+ L++ EG+L+ S+ Sbjct: 19 ELLTIALTHRSYSYENGGLPTNERLEFLGDAVLGLTITEELYHRHPDRAEGDLAKLRASI 78 Query: 79 VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 V+ + + V R L L + + + + +SI AD VESL+ A+YL+ G+ V Sbjct: 79 VNTQALADVGRGLTDEGLGAHLFLGKGEENSGGADKSSILADGVESLLGAIYLEHGLTVV 138 Query: 136 GTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + + + + + A G+ V +GPDHD F+ V Sbjct: 139 REVILRLFGELLDTAPTLGAGLDWKSSLQELTAARGLGAPAYVVTSTGPDHDKEFSATVV 198 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 I G+ +K+ AE AAA K Sbjct: 199 IGEAEYGHGVGRTKKEAELKAAASAYKTL 227 >gi|170725604|ref|YP_001759630.1| ribonuclease III [Shewanella woodyi ATCC 51908] gi|238688672|sp|B1KI57|RNC_SHEWM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|169810951|gb|ACA85535.1| Ribonuclease III [Shewanella woodyi ATCC 51908] Length = 225 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 105/213 (49%), Gaps = 6/213 (2%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + L + +GY F+ +LL+ ALTH S + + ERLEFLGD IL ++IS L Sbjct: 1 MEPIKNIPRLCRTLGYDFSELALLDHALTHRSAAS---KHNERLEFLGDSILSIIISDAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F A EG+LS +LV + +++ E L ++++ K SI AD V Sbjct: 58 YHQFPKATEGDLSRMRATLVCGKMLAEIGFEFKLGDYLKLGPGELKSGGFRRESIIADAV 117 Query: 120 ESLIAALYLDGGIEVAGTFV-DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+YLD +EV + V Y + ++D KT LQE P YKVT Sbjct: 118 EAIIGAVYLDSDLEVTRSLVLGWYKTRLETIQPINQKDPKTLLQELLQGYKKPLPVYKVT 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G H FT+ + L P G+ S+R Sbjct: 178 DIRGEAHAQTFTIECYVEELRKPVVGVASSRRK 210 >gi|325105464|ref|YP_004275118.1| ribonuclease III [Pedobacter saltans DSM 12145] gi|324974312|gb|ADY53296.1| ribonuclease III [Pedobacter saltans DSM 12145] Length = 242 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 9/227 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61 L IG+ N SL A H SI+ + S ERLEFLGD +LG +++ +LF Sbjct: 18 VKALRNLIGFVPGNLSLYRMAFRHKSIALGIKKGVKNSNERLEFLGDAVLGAVVAEVLFK 77 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + +VS +Q+ ++L I ++ S +S+ D E+ Sbjct: 78 MYPYKDEGFLTEMRSKIVSRANLNQLGKKLGFNKLIEFDPST-VNISSKQSSLLGDAFEA 136 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G F+ + + K+ L EW + Sbjct: 137 LVGAVYLDKGYNFTKDFLINRILNPHVDIHTLEVTETNFKSRLIEWCQRLSKEIQFNLIP 196 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + G D D FT+ V I G A G+D +K+ AE++AA + + G+ Sbjct: 197 NQEG-DSDKLFTIQVVIDGELMATGVDYNKKNAEKLAAEKTCEMLGV 242 >gi|86131058|ref|ZP_01049657.1| ribonuclease III [Dokdonia donghaensis MED134] gi|85818469|gb|EAQ39629.1| ribonuclease III [Dokdonia donghaensis MED134] Length = 245 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61 + ++ IG+ N ++ EKA TH S+ +YERLEFLGD +LG +I+ LFN Sbjct: 19 FMRMQSIIGFKPKNLAIYEKAFTHRSLGLKKEDGNPLNYERLEFLGDAMLGSVIAAHLFN 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG L+ + +VS + +++ R+L+L +++ S + + ++ +V + Sbjct: 79 EVQGGNEGYLTKMRSKVVSRKHLNELGRDLNLVRYVKASIPIDNFGANIHGNLFEALVGA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + + V + + G+ ++ K T +++ + Sbjct: 139 IYLDRGYRYCEKFIAKRVIEPYVDIEKLEGRIISYKSVLIEWCQKEKH--TFKFETFEDT 196 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 G D F V + I G A+ SK+ AE++A+ Sbjct: 197 GQDAVKHFGVRLHIDGKIIAKARATSKKKAEEIASKRA 234 >gi|301770225|ref|XP_002920522.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like [Ailuropoda melanoleuca] Length = 1931 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 93/260 (35%), Gaps = 45/260 (17%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726 Query: 65 SAKEGELSVRFNSLVSAETC--------SQVARELDLASFI------------------- 97 G L+ ++LV+ D + Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVXXXXXXXXXXDYHKYFKAVSPELFHVIDDFVQFQL 1786 Query: 98 -------------RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 R D K+ + D+ ESL A+Y+D G+ + + Y Sbjct: 1787 EKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPM 1846 Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 R L ++ ++E + +D + V VE+ G +G+ Sbjct: 1847 MRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGV 1902 Query: 205 DCSKRAAEQVAAAEVLKREG 224 S R A+ AA L+ Sbjct: 1903 GRSYRIAKSAAARRALRSLK 1922 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 54/185 (29%), Gaps = 16/185 (8%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 VS ++ ++ L + E Sbjct: 1352 VSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSNTDKWEKDEMT 1404 Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 D L D + E W K E +H I + Sbjct: 1405 KDCMLANGKLDEDFEEDDEEEEELTWRAPKEDADYEDDFLEYD-QEHIK------FIDNM 1457 Query: 199 APAQG 203 G Sbjct: 1458 LMGSG 1462 >gi|157120736|ref|XP_001659747.1| dicer-1 [Aedes aegypti] gi|108883036|gb|EAT47261.1| dicer-1 [Aedes aegypti] Length = 2193 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 88/248 (35%), Gaps = 29/248 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS E +GY F +RS L +A+TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1937 YSAFEDSLGYQFTDRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1996 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A D + R S DV IQ D + Sbjct: 1997 QHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHIISE 2056 Query: 125 ALYLDGGIEVA---------------------GTFVDKYWKQRALKSGKFRRDAKTELQE 163 YL E K + + E Sbjct: 2057 EYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMSLDAVWKVYRSMMGPEIEQFS 2116 Query: 164 WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + K + T + G R V VE+ G +G+ + R A+ AA Sbjct: 2117 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGTFRGIGRNYRIAKCTAA 2176 Query: 217 AEVLKREG 224 L++ Sbjct: 2177 KCALRQLK 2184 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1654 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYENVHEGKLSHLRSKQV 1711 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 S ++ R L + + D +E Sbjct: 1712 SNLNLYRLGRRKVLGESMIATKFEPHDNWLPPCYYVPKELE 1752 >gi|293604014|ref|ZP_06686427.1| ribonuclease III [Achromobacter piechaudii ATCC 43553] gi|292817618|gb|EFF76686.1| ribonuclease III [Achromobacter piechaudii ATCC 43553] Length = 253 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 69/213 (32%), Positives = 106/213 (49%), Gaps = 6/213 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +TLE R+ + F + +LLE+ALTH S ERLEFLGD +L +++ +LF + Sbjct: 1 MSLATLENRLDHHFGDPALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLFERY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + + +A+ L+L+ ++R+ K SI AD VE+L Sbjct: 58 SKIDEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A + + ++ +DAKT LQE+ + P Y V Sbjct: 118 GAVFLDAGFDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPLYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213 G H +F V I L S+RAAEQ Sbjct: 178 GAAHSQQFEVECAIPALEIKVTAPGASRRAAEQ 210 >gi|301312334|ref|ZP_07218251.1| ribonuclease III [Bacteroides sp. 20_3] gi|300829756|gb|EFK60409.1| ribonuclease III [Bacteroides sp. 20_3] Length = 280 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L K +G+ N + E+AL H S S + + ERLEFLGD IL ++ +++ Sbjct: 24 YLSLSKILGFYPDNLQIYEQALLHKSSSVETDDGKWLNNERLEFLGDGILDAAVADIVYK 83 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + +EG L+ + +V ET ++VA +L L + S+ + + ++ + Sbjct: 84 RYPNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYSTKINSHNNHMYGNALEALIGA 143 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + D + + + + K K+ L EW+ + + Sbjct: 144 IYLDQGYDVCYKFIRDVMIEKYIDVDTLVRKEINF-KSNLIEWSQKNKISISFDLIESFT 202 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D +P F +++ G G+ SK+ ++Q A+ +KR Sbjct: 203 DHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKRL 244 >gi|2500553|sp|Q53844|RNC_SPICI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|1143009|gb|AAA84999.1| orfb [Spiroplasma citri] gi|110005386|emb|CAK99709.1| putative ribonuclease III protein [Spiroplasma citri] Length = 248 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 114/226 (50%), Gaps = 6/226 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFN 61 + K+ R +ALTH+S ++ + SY +R+EFLGD IL IS LF Sbjct: 13 IELKAFFKQYHVFIKERQYYLEALTHNSYANEHNLSYTYQRMEFLGDAILAKEISLYLFL 72 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F EGE++ + +V T +++ R ++ A F+ + K I AD+ ES Sbjct: 73 SFPDKNEGEITNLRSKIVREGTLAELVRRMNWAPFLLLGKGEIKTKGYEKNRILADIYES 132 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +IAALYLD G +V TF++ + RD KTELQE+ A T EYK+ Sbjct: 133 MIAALYLDLGEDVVRTFINNTLIRMVSNPGFFDKIRDYKTELQEFLQAGDARTLEYKLIK 192 Query: 180 RSGP-DHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 S P + + +TVV EI G+ +G + + AEQ+AA + L++ Sbjct: 193 ESQPLEGNRVLYTVVAEIGGIRYGEGCGYTHKEAEQLAARDALQKL 238 >gi|294668882|ref|ZP_06733972.1| ribonuclease III [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309179|gb|EFE50422.1| ribonuclease III [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 233 Score = 108 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 65/216 (30%), Positives = 106/216 (49%), Gaps = 6/216 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +++++ Y F LL +ALTH S S + ER EF+GD IL I+ +L++ F E Sbjct: 4 IQQKLQYRFKQPELLTRALTHRSYSSRH---NERFEFVGDAILNYTIAKMLYDTFLDLPE 60 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS +LV+ +T +++A EL + + + + K SI +D +E++ AA+ Sbjct: 61 GRLSRLRANLVNQDTLAEIATELKVGDALLLGNGELKSGGFRRPSILSDAMEAMFAAVSF 120 Query: 129 DGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D A V + +R + +DAKT LQE A+ P+Y++ + G + Sbjct: 121 DTDFNAAEQVVRHLFARRVGSISFDNEGKDAKTMLQEALQARRLALPKYRIEHQEGEGYT 180 Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 RFTV ++ L S+RAAEQ A + Sbjct: 181 ARFTVSCDLGELGFITTAEAHSRRAAEQQTAKTAFE 216 >gi|315606951|ref|ZP_07881957.1| ribonuclease III [Prevotella buccae ATCC 33574] gi|315251332|gb|EFU31315.1| ribonuclease III [Prevotella buccae ATCC 33574] Length = 371 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y++L IG+ + L E+AL H S+ + + ERLEFLGD IL ++ ++F Sbjct: 20 YTSLYDIIGFYPRDIRLYEQALMHKSVMRRNAKGRPVNNERLEFLGDAILDAIVGDIVFK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV +T +++A+E+ ++ I + + +V + Sbjct: 80 HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGISQLILSNGHNSSHNSYLGGNAFEALVGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 L D ++ + + K K++L EW ++ Sbjct: 140 LYLDRGYDACMKFMQKRILSQMINIDKVAYKEVNF-KSKLIEWGQKNRVKLDFKLLSQGK 198 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 D +P F I G G SK+ ++Q A+ L++ Sbjct: 199 DKDGNPMFAYQAVIEGCEGGTGKGYSKKESQQTASKLTLEKLK 241 >gi|315225570|ref|ZP_07867380.1| ribonuclease III [Capnocytophaga ochracea F0287] gi|314944514|gb|EFS96553.1| ribonuclease III [Capnocytophaga ochracea F0287] Length = 252 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 3/224 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLL 59 + Y+ +++ +G+ N S +A TH S + ++SYERLEFLGD ILG +I+ + Sbjct: 19 DGIFYTKIKELLGFPPKNLSYYSEAFTHPSYQFQKATRKSYERLEFLGDAILGAVIADYI 78 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F + EG L+ + +V +Q+ +++ L F+R R+ + ++ ++ Sbjct: 79 FTNAPEQDEGYLTKMRSKIVERRNLNQLGKDMRLLDFLRTKLTPRQLGNNITGNLFEALI 138 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ++ + + + GK K+ L EW Sbjct: 139 GAIYLDRGYKACFKFIERELILPYINIKNLEGKVISH-KSLLIEWCQKHKLDFAFEAEED 197 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + G + + SK+ AE++AA + Sbjct: 198 IEDCSETKFFVAKVHVQGFSVTRARSTSKKKAEEIAAKRACYKI 241 >gi|227875300|ref|ZP_03993442.1| ribonuclease III [Mobiluncus mulieris ATCC 35243] gi|227844205|gb|EEJ54372.1| ribonuclease III [Mobiluncus mulieris ATCC 35243] Length = 261 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 6/201 (2%) Query: 20 RSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 LL A+TH S SH + ++ ERLEFLGD +L ++++ L+ +F EG L+ Sbjct: 28 PDLLVLAMTHRSFSHEHGKTGSRGTNERLEFLGDAVLQIIVTEYLYRNFPDEPEGTLAQM 87 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 + VS ++VAR++ L ++R+ + SI +D +E+LI A +L G+ V Sbjct: 88 RAATVSQTPLAEVARKIHLGEYLRLGVGEDRQGGRDKDSILSDTLEALIGATFLSCGLSV 147 Query: 135 AGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 V+++ ++ + + + + +GPDH F+ Sbjct: 148 TRVVVERHLRRFLRNAPRRAVTLDWKTTLQELLSAADLGEVTYEVVATGPDHQKHFSAQA 207 Query: 194 EISGLAPAQGMDCSKRAAEQV 214 + G +G SK+ AE Sbjct: 208 LVEGENWGEGQGSSKKIAEHQ 228 >gi|313157061|gb|EFR56491.1| ribonuclease III [Alistipes sp. HGB5] Length = 232 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 83/210 (39%), Gaps = 11/210 (5%) Query: 14 GYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 G+ N L + AL H S S + ERLEFLGD ++ + S LF + EG Sbjct: 3 GFIPNNIELYKLALIHKSASLVLEDGRAINNERLEFLGDAVIEAVTSDYLFIEYPDRDEG 62 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 L+ + +VS ++ + +A + L + + I D E++I A+YLD Sbjct: 63 FLTQLRSKIVSRQSLNVLAVNIGLDRHVISNGSTSV----TQKHIYGDAFEAMIGAVYLD 118 Query: 130 GGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 G E + R + + D K+ L EW + + Sbjct: 119 QGYEFVNRLLINRIYFRHLSLDELTESETDFKSRLIEWCQKNRHKIAFRTGYDKEYSANH 178 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 P F V + G+ G SK+ AEQ AA Sbjct: 179 PVFYSTVLVDGMEVGHGSGDSKKEAEQHAA 208 >gi|157285009|gb|ABV31244.1| dicer-like 1 [Physcomitrella patens] Length = 1662 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 28/243 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ + +LE IG+ F RSLL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1316 MLSIDFDSLEASIGHKFRKRSLLVEAITHASRPSSGVPGYQRLEFVGDAVLDYLITRFLF 1375 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111 + G L+ + V+ E ++VA + +R S + Sbjct: 1376 FKYTDLPPGRLTDLRAAAVNNENFARVAVKHSFHLHLRHGSSALETQIRNFVNDIQTELD 1435 Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + D++ES+ AL+LD +E V K ++ Sbjct: 1436 KPGVNSFGLGDFKAPKVLGDILESIAGALFLDACLETDH--VWKVFEPLLQPMVTPETLP 1493 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 ++E + + TV V + G+ + K+ A+++AA Sbjct: 1494 MHPVRELQERCQQQAEALEYKASRAGNVA---TVEVYVDGVQIGSAQNAQKKMAQKLAAR 1550 Query: 218 EVL 220 L Sbjct: 1551 NAL 1553 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ +I Y A +L +ALT +S ++ SYER E LGD L ++S LF + Sbjct: 1095 QLKHQIDYPIAASKVL-EALTAASCQETF--SYERAELLGDAYLKWVVSRRLFLKYPCKH 1151 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A + L S+I+ Sbjct: 1152 EGQLTRMRQQIVSNSVLYQYALDKGLQSYIQ 1182 >gi|308235889|ref|ZP_07666626.1| ribonuclease III [Gardnerella vaginalis ATCC 14018] Length = 309 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 9/221 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64 L + +G + LL +ALTH S SH + ++YERLEFLGD +L L+ + LF+ Sbjct: 74 QELLRALGTTIS-PDLLVEALTHRSFSHEHPGTKNYERLEFLGDAVLELVSTETLFSAHP 132 Query: 65 SAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS S VAR+ L + +I + + + SI D+VE+LI Sbjct: 133 DMTEGQLAKLRAKAVSEWALSAVARDKLHVGPYILLGHGEMEHGGAQKDSILCDIVEALI 192 Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +++ GI+ A V + A + + G+ SG Sbjct: 193 GATFVEHGIDEARAVVHRLIDDTLAEVLTEGPALDWKTSLTVLAHEMGLDEPQYRMSVSG 252 Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEV 219 PD+ P F + + SKR A+ AA + Sbjct: 253 PDYAPVFHARAVLAHESGDELLGEADGSSKRKAQLAAADKA 293 >gi|311115015|ref|YP_003986236.1| ribonuclease III [Gardnerella vaginalis ATCC 14019] gi|310946509|gb|ADP39213.1| ribonuclease III [Gardnerella vaginalis ATCC 14019] Length = 298 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 9/221 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64 L + +G + LL +ALTH S SH + ++YERLEFLGD +L L+ + LF+ Sbjct: 63 QELLRALGTTIS-PDLLVEALTHRSFSHEHPGTKNYERLEFLGDAVLELVSTETLFSAHP 121 Query: 65 SAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ VS S VAR+ L + +I + + + SI D+VE+LI Sbjct: 122 DMTEGQLAKLRAKAVSEWALSAVARDKLHVGPYILLGHGEMEHGGAQKDSILCDIVEALI 181 Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +++ GI+ A V + A + + G+ SG Sbjct: 182 GATFVEHGIDEARAVVHRLIDDTLAEVLTEGPALDWKTSLTVLAHEMGLDEPQYRMSVSG 241 Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEV 219 PD+ P F + + SKR A+ AA + Sbjct: 242 PDYAPVFHARAVLAHESGDELLGEADGSSKRKAQLAAADKA 282 >gi|13357763|ref|NP_078037.1| ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762098|ref|YP_001752286.1| ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920496|ref|ZP_02931789.1| ribonuclease III [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171920571|ref|ZP_02931835.1| ribonuclease III [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178791|ref|ZP_02964587.1| ribonuclease III [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|186701949|ref|ZP_02971588.1| ribonuclease III [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|188024220|ref|ZP_02996925.1| ribonuclease III [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188524062|ref|ZP_03004155.1| ribonuclease III [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867699|ref|ZP_03079700.1| ribonuclease III [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273484|ref|ZP_03206020.1| ribonuclease III [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554634|ref|YP_002284601.1| ribonuclease III [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550368|ref|ZP_03771317.1| ribonuclease III [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551297|ref|ZP_03772243.1| ribonuclease III [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|22654077|sp|Q9PQT8|RNC_UREPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|11263399|pir||F82919 ribonuclease III UU205 [imported] - Ureaplasma urealyticum gi|6899171|gb|AAF30612.1|AE002120_4 ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827675|gb|ACA32937.1| ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902964|gb|EDT49253.1| ribonuclease III [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171903275|gb|EDT49564.1| ribonuclease III [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209411|gb|EDU06454.1| ribonuclease III [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|186700702|gb|EDU18984.1| ribonuclease III [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|188018874|gb|EDU56914.1| ribonuclease III [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|195659811|gb|EDX53191.1| ribonuclease III [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660554|gb|EDX53810.1| ribonuclease III [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250004|gb|EDY74784.1| ribonuclease III [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209542135|gb|ACI60364.1| ribonuclease III [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379112|gb|EEH01477.1| ribonuclease III [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379522|gb|EEH01884.1| ribonuclease III [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 236 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 101/232 (43%), Gaps = 12/232 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M ++ K+ N S+ +ALTH S ++ ++ ++Y+RLEFLGD + +IS Sbjct: 1 MDNKKFLDFLKQNRIEPKNLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNF 60 Query: 59 LFNHFDSAKEGE-------LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +FN+ E ++ +++V +E S A++L L F+ + L +D + M Sbjct: 61 IFNYKIKDNEKMRSLDEGEMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARM 120 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 I D+ E+ I A+ D GI+ ++K + + + + + + Sbjct: 121 EKIYEDIFEAFIGAVAQDQGIKKVSLILEKTLIKYFREGQINYQKDYKTIFQEQAQRINK 180 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P R+ D V + + L G+ +++ AE +AA + + Sbjct: 181 KPIMYKLVRNEGDKK---EVHLVWNDLIYGIGIASTRKEAEILAAKNAILKL 229 >gi|307298654|ref|ZP_07578457.1| ribonuclease III [Thermotogales bacterium mesG1.Ag.4.2] gi|306915819|gb|EFN46203.1| ribonuclease III [Thermotogales bacterium mesG1.Ag.4.2] Length = 241 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 112/228 (49%), Gaps = 11/228 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES-------YERLEFLGDRILGLLISTL 58 + G A+R L+ +AL HSS ++ ++ ER+EFLGD +L L ++ Sbjct: 10 IEKFCRINGIE-ADRELVFRALCHSSFTNELAQNGERTLESNERMEFLGDAVLELSLAKT 68 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+N + EGE+S + S + S VA+ + + FI + R+ + SI AD Sbjct: 69 LYNEYYL-TEGEMSKIRAMVGSEKVLSSVAKTMRIGDFIFLGKGERQTGGAERDSILADA 127 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYK 176 E+++AA++L GG+ V+ FV ++ + D KT LQE A+FG P Y+ Sbjct: 128 FEAVLAAIFLTGGLGVSVEFVQSKLSDYIERAVEGELILDYKTSLQELTQARFGSRPLYE 187 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP + F V V + G +G +K+AAEQ+AA L+ Sbjct: 188 TLLDEGPPQEKWFKVGVFLDGSLMGEGEGRTKKAAEQLAAKHALEILK 235 >gi|325281581|ref|YP_004254123.1| Ribonuclease 3 [Odoribacter splanchnicus DSM 20712] gi|324313390|gb|ADY33943.1| Ribonuclease 3 [Odoribacter splanchnicus DSM 20712] Length = 246 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 9/216 (4%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAK 67 +IG+ N+SL AL H S S + +YERLEFLGD +LG +++ LL+ F Sbjct: 26 QIGFVPNNKSLYRLALLHKSASKMTSKGVVLNYERLEFLGDAVLGAIVAELLYKFFPKKD 85 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ + +VS E+ +++A + L + SD+ ++ I DV E+ I A++ Sbjct: 86 EGFLTRVRSKVVSRESLNELAINIGLDKAVVAKSDISRNK-----HIYGDVFEAFIGAMF 140 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 LD G F++K+ + Sbjct: 141 LDQGFVNTKRFIEKFIFPNFFDIKDLVTIDTNYKSRLIEWGQKNKVDIHFQTDEVARGRR 200 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F V +S +G SK+ AEQ AA V+ Sbjct: 201 KFCCTVMLSEEEKGKGEGTSKKEAEQNAAKIVIDIL 236 >gi|288925905|ref|ZP_06419835.1| ribonuclease III [Prevotella buccae D17] gi|288337329|gb|EFC75685.1| ribonuclease III [Prevotella buccae D17] Length = 370 Score = 108 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y++L IG+ + L E+AL H S+ + + ERLEFLGD IL ++ ++F Sbjct: 19 YTSLYDIIGFYPRDIRLYEQALMHKSVMRRNAKGRPVNNERLEFLGDAILDAIVGDIVFK 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV +T +++A+E+ ++ I + + +V + Sbjct: 79 HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGISQLILSNGHNSSHNSYLGGNAFEALVGA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 L D ++ + + K K++L EW ++ Sbjct: 139 LYLDRGYDACMKFMQKRILSQMINIDKVAYKEVNF-KSKLIEWGQKNRVKLDFKLLSQGK 197 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 D +P F I G G SK+ ++Q A+ L++ Sbjct: 198 DKDGNPMFAYQAVIEGCEGGTGKGYSKKESQQTASKLTLEKLK 240 >gi|239607869|gb|EEQ84856.1| dicer-like protein [Ajellomyces dermatitidis ER-3] Length = 1522 Score = 108 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 85/251 (33%), Gaps = 34/251 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + R+GY F LL A TH+S ++ Y+RLEFLGD +L ++ L++ + Sbjct: 1236 KQIGDRLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYP 1295 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102 L+ ++VS + VA +L L + S+ Sbjct: 1296 DRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNN 1355 Query: 103 --LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 S D++E+ I A+++D + + D Sbjct: 1356 SPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQYFEDMSIYDTFAN 1415 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDH--------DPRFTVVVEISGLAPAQGMDCSKRAAE 212 + +T ++ T +PR V + A+G+ S R A+ Sbjct: 1416 KHPTTYFHNRLTIDFGCTSYCLKAGEVQMVDGTEPRVYAAVIVHDEFVAEGIASSVRYAK 1475 Query: 213 QVAAAEVLKRE 223 A+ L + Sbjct: 1476 IKASEAALAKL 1486 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 13/100 (13%) Query: 13 IGYAFANRSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLF 60 + L +ALT H ++YERLEFLGD L + S LF Sbjct: 1036 LHINIK-THLALEALTKDSDNTEEHRGEQIHFQRGMGKNYERLEFLGDCFLKMATSISLF 1094 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 E + V+ L+ + A + L FIR Sbjct: 1095 AMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFIRTQ 1134 >gi|299136236|ref|ZP_07029420.1| ribonuclease III [Acidobacterium sp. MP5ACTX8] gi|298602360|gb|EFI58514.1| ribonuclease III [Acidobacterium sp. MP5ACTX8] Length = 289 Score = 108 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 67/256 (26%), Positives = 106/256 (41%), Gaps = 39/256 (15%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----------------------SYERL 43 L++ +G+ F LL ALTH S ++ + E+L Sbjct: 16 IDELQRLLGHRFTRPELLALALTHRSHTYEARHGVPTVILPAHPDQRDQRNPPGTDNEQL 75 Query: 44 EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 EFLGD ILGL+++ L+ F + EGEL+ + LVS ++V L+L + + Sbjct: 76 EFLGDSILGLVVTEALYREFPQSSEGELTRLRSILVSRARMAEVGVALELGEQLFLGKSA 135 Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--------- 154 ++ ++ A+ VE++IAA+YLD G + + Sbjct: 136 DQNGGRKKPALLANAVEAIIAAVYLDAGAKGLKAVRAIVERYVLEPDLDTMRAALAGEEG 195 Query: 155 ----RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL----APAQGMDC 206 RD KT LQE A Y T ++GP H RF+V ++ G A Sbjct: 196 RGALRDHKTVLQERVQASGLGRLRYVDTDQTGPAHQRRFSVEAQLEGEAGTRTLAAAEGS 255 Query: 207 SKRAAEQVAAAEVLKR 222 +K+ A+Q AA L + Sbjct: 256 NKKEAQQRAAELALAQ 271 >gi|311104757|ref|YP_003977610.1| ribonuclease III [Achromobacter xylosoxidans A8] gi|310759446|gb|ADP14895.1| ribonuclease III [Achromobacter xylosoxidans A8] Length = 253 Score = 108 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 6/213 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +TLE R+ + F++ +LLE+ALTH S ERLEFLGD +L +++ +LF + Sbjct: 1 MSLATLENRLDHHFSDPALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLFERY 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + + +A+ L+L+ ++R+ K SI AD VE+L Sbjct: 58 SKIDEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALF 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A + + ++ +DAKT LQE+ + P Y V Sbjct: 118 GAVFLDAGFDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPLYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213 G H +F V I L S+RAAEQ Sbjct: 178 GAAHSQQFEVECAIPALEIKVMAPGASRRAAEQ 210 >gi|327355811|gb|EGE84668.1| hypothetical protein BDDG_07613 [Ajellomyces dermatitidis ATCC 18188] Length = 1509 Score = 108 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 85/251 (33%), Gaps = 34/251 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + R+GY F LL A TH+S ++ Y+RLEFLGD +L ++ L++ + Sbjct: 1223 KQIGDRLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYP 1282 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102 L+ ++VS + VA +L L + S+ Sbjct: 1283 DRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNN 1342 Query: 103 --LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 S D++E+ I A+++D + + D Sbjct: 1343 SPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQYFEDMSIYDTFAN 1402 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDH--------DPRFTVVVEISGLAPAQGMDCSKRAAE 212 + +T ++ T +PR V + A+G+ S R A+ Sbjct: 1403 KHPTTYFHNRLTIDFGCTSYCLKAGEVQMVDGTEPRVYAAVIVHDEFVAEGIASSVRYAK 1462 Query: 213 QVAAAEVLKRE 223 A+ L + Sbjct: 1463 IKASEAALAKL 1473 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 13/100 (13%) Query: 13 IGYAFANRSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLF 60 + L +ALT H ++YERLEFLGD L + S LF Sbjct: 1023 LHINIK-THLALEALTKDSDNTEEHRGEQIHFQRGMGKNYERLEFLGDCFLKMATSISLF 1081 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 E + V+ L+ + A + L FIR Sbjct: 1082 AMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFIRTQ 1121 >gi|195424855|gb|ACF96960.1| dicer-1 [Litopenaeus vannamei] Length = 2473 Score = 108 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 84/247 (34%), Gaps = 28/247 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E++IGY F +RS L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 2217 YQVFEEKIGYTFRDRSYLLQASTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 2276 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A + D + R S V +Q + + Sbjct: 2277 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGPDRVIRDFVKMQEENGHKINE 2336 Query: 125 ALYLDGGIEVAGTFVDKYWK------------------------QRALKSGKFRRDAKTE 160 Y E + K + + Sbjct: 2337 EYYFMEEDEREAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCPEIERFS 2396 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDH---DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + T + G D + V VEI G G+ + R A+ AA Sbjct: 2397 GVVPKSPIRELLEMEPETAKFGKPERLVDGKVRVSVEIFGKGSFSGVGRNYRIAKSTAAK 2456 Query: 218 EVLKREG 224 L+ Sbjct: 2457 RALRHLK 2463 Score = 41.8 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + + + S++ +ALT S+ + + ERLE +GD L I+T L+ + EG+ Sbjct: 1953 DLLNHPGPSPSVILQALTMSNANDGV--NLERLETIGDSFLKYAITTFLYCTYPQRHEGK 2010 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 LS + VS ++ + L + + D Sbjct: 2011 LSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNW 2048 >gi|261198280|ref|XP_002625542.1| dicer-like protein [Ajellomyces dermatitidis SLH14081] gi|239595505|gb|EEQ78086.1| dicer-like protein [Ajellomyces dermatitidis SLH14081] Length = 1522 Score = 108 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 85/251 (33%), Gaps = 34/251 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + R+GY F LL A TH+S ++ Y+RLEFLGD +L ++ L++ + Sbjct: 1236 KQIGDRLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYP 1295 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102 L+ ++VS + VA +L L + S+ Sbjct: 1296 DRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNN 1355 Query: 103 --LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 S D++E+ I A+++D + + D Sbjct: 1356 SPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQYFEDMSIYDTFAN 1415 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDH--------DPRFTVVVEISGLAPAQGMDCSKRAAE 212 + +T ++ T +PR V + A+G+ S R A+ Sbjct: 1416 KHPTTYFHNRLTIDFGCTSYCLKAGEVQMVDGTEPRVYAAVIVHDEFVAEGIASSVRYAK 1475 Query: 213 QVAAAEVLKRE 223 A+ L + Sbjct: 1476 IKASEAALAKL 1486 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 13/100 (13%) Query: 13 IGYAFANRSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLF 60 + L +ALT H ++YERLEFLGD L + S LF Sbjct: 1036 LHINIK-THLALEALTKDSDNTEEHRGEQIHFQRGMGKNYERLEFLGDCFLKMATSISLF 1094 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 E + V+ L+ + A + L FIR Sbjct: 1095 AMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFIRTQ 1134 >gi|260654634|ref|ZP_05860124.1| ribonuclease III [Jonquetella anthropi E3_33 E1] gi|260630650|gb|EEX48844.1| ribonuclease III [Jonquetella anthropi E3_33 E1] Length = 239 Score = 108 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 99/220 (45%), Gaps = 12/220 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHF 63 S +KR G F + +LL+ ALTH S + +RLEFLGD ++ +S LF Sbjct: 14 DLSAFQKRSGLVFRDPALLDLALTHRSFAAERGGGDNQRLEFLGDALIEGAVSAELFCSR 73 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG+L+ R LV ++ ++ A +L L +R + + +++ Sbjct: 74 TNDDEGKLTRRRARLVCQKSLARCADKLGLGELLRRGRGQTEA---------TEAMKADA 124 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 G + L DAKT L +W + VT ++ T R+GP Sbjct: 125 FEALAAALYLDGGAEAMRGLVDLILSEPLAPLDAKTLLCQWGAS-CRVTVTFEETGRTGP 183 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 DH+P F V V+ +G A G S+ AAEQ AA +V++ Sbjct: 184 DHEPHFFVRVQ-AGSETACGEGPSRLAAEQDAAGKVIRSL 222 >gi|188518513|ref|ZP_03003985.1| ribonuclease III [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188997913|gb|EDU67010.1| ribonuclease III [Ureaplasma urealyticum serovar 11 str. ATCC 33695] Length = 239 Score = 108 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 101/232 (43%), Gaps = 12/232 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M ++ K+ N S+ +ALTH S ++ ++ ++Y+RLEFLGD + +IS Sbjct: 1 MDNKKFLDFLKQNRIEPKNLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNF 60 Query: 59 LFNHFDSAKEGE-------LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +FN+ E ++ +++V +E S A++L L F+ + L +D + M Sbjct: 61 IFNYKIKDNEKMRSLDEGEMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARM 120 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 I D+ E+ I A+ D GI+ ++K + + + + + + Sbjct: 121 EKIYEDIFEAFIGAVAQDQGIKKVSLILEKTLIKYFREGQINYQKDYKTIFQEQAQRINK 180 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P R+ D V + + L G+ +++ AE +AA + + Sbjct: 181 KPIMYKLVRNEGDKK---EVHLVWNDLIYGIGIASTRKEAEILAAKNAILKL 229 >gi|256820149|ref|YP_003141428.1| ribonuclease III [Capnocytophaga ochracea DSM 7271] gi|256581732|gb|ACU92867.1| ribonuclease III [Capnocytophaga ochracea DSM 7271] Length = 252 Score = 108 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 3/222 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFN 61 + Y+ +++ +G+ N S +A TH S + ++SYERLEFLGD ILG +I+ +F Sbjct: 21 IFYTKIKELLGFPPKNLSYYSEAFTHPSYQFQKATRKSYERLEFLGDAILGAVIADYIFT 80 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + +V +Q+ +++ L F+R R+ + ++ ++ + Sbjct: 81 NAPEQDEGYLTKMRSKIVERRNLNQLGKDMRLLDFLRTKLTPRQLGNNITGNLFEALIGA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + + + + GK K+ L EW Sbjct: 141 IYLDRGYKACFKFIERELILPYINIKNLEGKVISH-KSLLIEWCQKHKLDFAFEAEEDIE 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + G + + SK+ AE++AA + Sbjct: 200 DCSETKFFVAKVHVQGFSVTRARSTSKKKAEEIAAKRACYKI 241 >gi|237755458|ref|ZP_04584082.1| ribonuclease III [Sulfurihydrogenibium yellowstonense SS-5] gi|237692390|gb|EEP61374.1| ribonuclease III [Sulfurihydrogenibium yellowstonense SS-5] Length = 247 Score = 108 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59 + LE+ IGY F ++SLL A+TH S Y + YE LEFLGD ++ L+IS +L Sbjct: 13 KDKIKQLEEIIGYTFKDKSLLLAAITHRSFVAEYHKKIQDYEVLEFLGDAVISLIISEIL 72 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F A+EGELS +++VS S++AR ++ F+ +S + + S+ DV Sbjct: 73 IKQFPYAREGELSQYRSAIVSEAYLSKLARNVNFQDFVLISKGEKYQKGAERESLLCDVF 132 Query: 120 ESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTE---LQEWAHAKFGVTPE 174 E++ A+Y D ++ +K +K+ + + + LQ +G P Sbjct: 133 EAVFGAIYTDCQYNLDIPREIFNKNFKEIVINDIQQENLPRDYKSLLQIETQRLYGKIPT 192 Query: 175 YKVTFRSGPDHDPRFTVVVEISGL 198 YK+ GP+HD FTV + + Sbjct: 193 YKLISSEGPEHDKTFTVECHVEEI 216 >gi|327403887|ref|YP_004344725.1| Ribonuclease 3 [Fluviicola taffensis DSM 16823] gi|327319395|gb|AEA43887.1| Ribonuclease 3 [Fluviicola taffensis DSM 16823] Length = 240 Score = 108 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 4/216 (1%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 R GY N L +A+TH SI++ Q+ S ERLEFLGD IL +I+ LF F E Sbjct: 25 NRFGYRPKNIELFYQAVTHRSIAYHGQKDFSNERLEFLGDAILDSIIAEFLFQRFPEEDE 84 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +VS +T S++ EL+L S +R + ++ S + ++ ++ Sbjct: 85 GYLTKVKSKVVSRKTLSEIGEELELRSILRYNKGRSINLSSLEGNAFEAIIGAIYLDSSY 144 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 + ++ + + + + + E+ V Sbjct: 145 EETKKIIYNHIFRKYVDLNKILEEEIDFKSKLFIWSQKRRL--ALEFVVLREENNHGTWF 202 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + V+V+++ + +G SK+ AEQ AA E L G Sbjct: 203 YEVIVQVNSVNYGKGSGNSKKLAEQAAAKETLILMG 238 >gi|289705863|ref|ZP_06502243.1| ribonuclease III [Micrococcus luteus SK58] gi|289557406|gb|EFD50717.1| ribonuclease III [Micrococcus luteus SK58] Length = 244 Score = 108 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 62/219 (28%), Positives = 104/219 (47%), Gaps = 7/219 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L +R+G LE+ALTH S ++ + ERLEFLGD +LG +++ +F + Sbjct: 19 LFERLGVHIT-AGTLERALTHRSFAYEQGGLPTNERLEFLGDSVLGYVVTDHIFTVYPDL 77 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ R ++VS ++VAR + + F+R+ + R+ + SI AD +E+LI A+ Sbjct: 78 AEGDLARRRAAVVSTRALAKVARRIGIGPFVRLGTGERRTGGADKDSILADTLEALIGAV 137 Query: 127 YLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 Y+D G A V ++ + A ++ G+ GP H Sbjct: 138 YVDHGAVAAAALVHRHVVPLLDEPDLLRESTDWKTVVAEAASRHGLGAVRYAIEGQGPAH 197 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLK 221 DPR+ + + + SK+ AE+ AAA L+ Sbjct: 198 DPRYRATLVVGEREYDSAVASSKKQAERDAAAASWPALE 236 >gi|229140493|ref|ZP_04269048.1| Ribonuclease 3 [Bacillus cereus BDRD-ST26] gi|228643054|gb|EEK99330.1| Ribonuclease 3 [Bacillus cereus BDRD-ST26] Length = 210 Score = 108 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 5/191 (2%) Query: 24 EKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +A THSS + ++ E ERLEFLGD +L L +S LF + + EGEL+ ++V Sbjct: 2 IQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIV 61 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 + + A EL S + + ++ ADV E+ I ALYLD G+E F+ Sbjct: 62 CEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFL 121 Query: 140 DKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + + + D K++LQE EY++ GP H+ F V ++ + Sbjct: 122 KEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTLNNV 181 Query: 199 APAQGMDCSKR 209 A G SK+ Sbjct: 182 ALGLGSGKSKK 192 >gi|220912984|ref|YP_002488293.1| ribonuclease III [Arthrobacter chlorophenolicus A6] gi|219859862|gb|ACL40204.1| Ribonuclease III [Arthrobacter chlorophenolicus A6] Length = 242 Score = 108 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 91/212 (42%), Gaps = 6/212 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 MS+ L KR+G + L ALTH S ++ + ERLEFLGD ILG ++ Sbjct: 1 MSST--EELLKRLGVTI-DAGTLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDS 57 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ EGEL+ R +++VS + + R L + FI + + SI AD Sbjct: 58 LYRDNPDLPEGELAKRRSAVVSTRALANIGRSLGIGEFIYLGQGEKLTEGKNKASILADT 117 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A Y+ IE A V + + + A + + Sbjct: 118 MEALIGATYVSNDIETARQLVMRLIGPLLKDAAVLGAGTDWKTSIQELAASRQLGTIHYA 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +GPDH F+ V+ I G +G SK+ Sbjct: 178 VEGAGPDHARTFSAVLNIGGKPYGKGTGHSKK 209 >gi|224025527|ref|ZP_03643893.1| hypothetical protein BACCOPRO_02267 [Bacteroides coprophilus DSM 18228] gi|224018763|gb|EEF76761.1| hypothetical protein BACCOPRO_02267 [Bacteroides coprophilus DSM 18228] Length = 308 Score = 108 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 4/219 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +G+ N + ++AL H S S + ERLEFLGD IL +++ +++ F+ Sbjct: 23 FYRMLGFYPRNIEIYQQALLHKSSSVKEKGRLLNNERLEFLGDAILDAVVADIVYKKFEG 82 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG L+ + +V ET +QVA ++ L I+ ++ + +V ++ Sbjct: 83 KREGFLTNTRSKIVQRETLNQVAVQIGLDKLIKFTTRQSSHNSYMSGNAFEALVGAIYLD 142 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D + K + + K++L EW+ D Sbjct: 143 RGYD-ACKKFMEERIIAQYLNIDKISRKEVNFKSKLIEWSQKNKFEVEFRLTGQSIDSDS 201 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +P F V + + +G SK+ ++Q+AA E LK+ Sbjct: 202 NPIFETQVMVENIPAGEGKGYSKKESQQLAAQETLKQIK 240 >gi|188997575|ref|YP_001931826.1| Ribonuclease III [Sulfurihydrogenibium sp. YO3AOP1] gi|188932642|gb|ACD67272.1| Ribonuclease III [Sulfurihydrogenibium sp. YO3AOP1] Length = 249 Score = 108 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 8/204 (3%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59 + LE+ IGY F ++SLL A+TH S Y + YE LEFLGD ++ L+IS +L Sbjct: 18 KDKVKQLEQIIGYTFKDKSLLLAAITHRSFVAEYHKKIPDYEVLEFLGDAVISLIISEIL 77 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 F A+EGELS +++VS S++AR + F+ +S + + S+ DV Sbjct: 78 IKQFPHAREGELSQYRSAIVSEAYLSKLARNIYFQDFVLISKGEKSQKGAERESLLCDVF 137 Query: 120 ESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTE---LQEWAHAKFGVTPE 174 E++ A+Y D ++ +K +K+ + + + LQ +G P Sbjct: 138 EAVFGAIYTDCQYNLDIPREIFNKNFKEIVINDIQQENLPRDYKSLLQIETQRLYGKIPT 197 Query: 175 YKVTFRSGPDHDPRFTVVVEISGL 198 YK+ GP+HD FTV + + Sbjct: 198 YKLISSEGPEHDKTFTVECHVEEI 221 >gi|296270740|ref|YP_003653372.1| ribonuclease III [Thermobispora bispora DSM 43833] gi|296093527|gb|ADG89479.1| ribonuclease III [Thermobispora bispora DSM 43833] Length = 267 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 4/206 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 L + + + +LE+ALTH S ++ + ERLEFLGD +LGL+++ L+ + Sbjct: 16 QELGEILDVELS-PDILEQALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRNHP 74 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ ++V+ + VAR LDL ++R+ +SI AD +E+LI Sbjct: 75 DMPEGQLAKLRAAVVNMRALADVARSLDLGKYLRLGRGEEGTGGRDKSSILADTLEALIG 134 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGP 183 +Y+D G++ A V + + +S + A + SGP Sbjct: 135 TVYVDKGLDEAFRVVHQLFDPLIERSASLGAGLDWKTSLQELTAAESLGVPEYHVDESGP 194 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 DH F V + G +G SK+ Sbjct: 195 DHAKSFVATVRVGGKEYGKGTGRSKK 220 >gi|261337990|ref|ZP_05965874.1| ribonuclease III [Bifidobacterium gallicum DSM 20093] gi|270277492|gb|EFA23346.1| ribonuclease III [Bifidobacterium gallicum DSM 20093] Length = 247 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 93/224 (41%), Gaps = 7/224 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64 L + +G LL +ALTH S SH +YERLEFLGD +L L+ + LF Sbjct: 21 KPLLEALGTTLT-PDLLVEALTHRSFSHENPGTRNYERLEFLGDAVLELVATESLFTDHP 79 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EGEL+ VS E S+VAR +L + +I + + + SI D+VESLI Sbjct: 80 DLSEGELAKMRAKAVSEEELSRVAREKLHVGPYILLGNGEAAQGGADKDSILCDIVESLI 139 Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +++ GIE A V A + + G+ + G Sbjct: 140 GATFVEHGIEGARPVVHHLIDDVLAEMMTEGPALDWKTSLVIKAHELGMDEPHFRMAVGG 199 Query: 183 PDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P++ P + V I G SKR A+ AA E Sbjct: 200 PEYAPEYHAQVLIGDDDRVWGTGDGSSKRKAQLAAAHEAWLELN 243 >gi|195331135|ref|XP_002032258.1| GM23619 [Drosophila sechellia] gi|194121201|gb|EDW43244.1| GM23619 [Drosophila sechellia] Length = 2249 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 86/248 (34%), Gaps = 29/248 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1993 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2052 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A F R S DV IQ + S+ Sbjct: 2053 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2112 Query: 125 ALYLDGGIEVAG---------------------TFVDKYWKQRALKSGKFRRDAKTELQE 163 YL E + E Sbjct: 2113 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2172 Query: 164 WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + K + T + G R V V++ +G+ + R A+ AA Sbjct: 2173 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAA 2232 Query: 217 AEVLKREG 224 L++ Sbjct: 2233 KCALRQLK 2240 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1723 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1780 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1781 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1821 >gi|58700160|ref|ZP_00374668.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae] gi|58533321|gb|EAL57812.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae] Length = 183 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 63/178 (35%), Positives = 96/178 (53%) Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 GD +L +++S LF F KEG L+ R LV T + VA+E+ L SFI +++ R + Sbjct: 1 GDSVLNMVVSATLFKLFPEEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCN 60 Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 + +E+LI A+Y+DGG+E F+ +YW++ A +D KT LQEW Sbjct: 61 GGRCNLKNLENSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQ 120 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 PEY++ ++GP H+P FT+ V I SK+ AEQ AA +L++ G Sbjct: 121 KNKLPLPEYELVKQTGPAHNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKIG 178 >gi|161621443|ref|NP_108012.2| ribonuclease III [Mesorhizobium loti MAFF303099] Length = 237 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 100/203 (49%), Positives = 130/203 (64%), Gaps = 1/203 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDS 65 L +R G+AFA+R L++ALTH+S + YER EFLGDR+LGL+++ +L F Sbjct: 14 EALVERTGHAFADRQRLQRALTHASARGANAGTDYERFEFLGDRVLGLVVADMLLAAFPD 73 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EGELS+R N+LV+AE S++A + L IR SD+R +++AD +ESLIA Sbjct: 74 AAEGELSLRLNALVNAEALSEIAEHIGLPDLIRAGSDVRGLEGRKRVNLRADALESLIAV 133 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LYLDGG+E A F+ KYW+ R+ SG RRDAKTELQEWAH P Y++ R GPDH Sbjct: 134 LYLDGGLEAARAFIHKYWQPRSQASGAARRDAKTELQEWAHQAASAVPAYQIDSREGPDH 193 Query: 186 DPRFTVVVEISGLAPAQGMDCSK 208 DP FTV V + PA G SK Sbjct: 194 DPLFTVSVRVGAFQPATGSGRSK 216 >gi|295397856|ref|ZP_06807919.1| ribonuclease III [Aerococcus viridans ATCC 11563] gi|294973901|gb|EFG49665.1| ribonuclease III [Aerococcus viridans ATCC 11563] Length = 247 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 81/204 (39%), Gaps = 5/204 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L R G + + +A THSS + Q ER+EFLGD +L L++S L+ ++ Sbjct: 26 LADRFGLEIQDETHYIEAFTHSSYVNENQNLALQDNERIEFLGDAVLELVVSNYLYRNYP 85 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG +S +V E+ ++ E F+R+ + S+ D+ ES++ Sbjct: 86 EMDEGRMSSLRALIVREESLAKRCVECGFDQFVRLGNGEEASNGRKRPSLLCDLFESVLG 145 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF-RSGP 183 A+YLD G++ + + R + K G SGP Sbjct: 146 AIYLDLGLDAIEHLMSLTIYPKIKNGDFTRLSDAKTALQEELQKEGAIQLAYELESESGP 205 Query: 184 DHDPRFTVVVEISGLAPAQGMDCS 207 H F V V + +G+ S Sbjct: 206 AHSKEFHVAVRLYDEIIGRGVGHS 229 >gi|195572986|ref|XP_002104476.1| Dicer-1 [Drosophila simulans] gi|194200403|gb|EDX13979.1| Dicer-1 [Drosophila simulans] Length = 1533 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 86/248 (34%), Gaps = 29/248 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1277 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1336 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A F R S DV IQ + S+ Sbjct: 1337 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 1396 Query: 125 ALYLDGGIEVAG---------------------TFVDKYWKQRALKSGKFRRDAKTELQE 163 YL E + E Sbjct: 1397 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 1456 Query: 164 WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + K + T + G R V V++ +G+ + R A+ AA Sbjct: 1457 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAA 1516 Query: 217 AEVLKREG 224 L++ Sbjct: 1517 KCALRQLK 1524 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1007 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1064 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1065 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1105 >gi|183508806|ref|ZP_02958264.1| ribonuclease III [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182675758|gb|EDT87663.1| ribonuclease III [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 236 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 12/232 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M ++ K+ N S+ +ALTH S ++ ++ ++Y+RLEFLGD + +IS Sbjct: 1 MDNKKFLDFLKQNRIEPKNLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNF 60 Query: 59 LFNHFDSAKEGEL-------SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +FN+ E + +++V +E S A++L L F+ + L +D + M Sbjct: 61 IFNYKIKDNEKMHSLDEGEMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARM 120 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 I D+ E+ I A+ D GI+ ++K + + + + + + Sbjct: 121 EKIYEDIFEAFIGAVAQDQGIKKVSLILEKTLIKYFREGQINYQKDYKTIFQEQAQRINK 180 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P R+ D V + + L G+ +++ AE +AA + + Sbjct: 181 KPIMYKLVRNEGDKK---EVHLVWNDLIYGIGIASTRKEAEILAAKNAILKL 229 >gi|242018047|ref|XP_002429494.1| dicer-1, putative [Pediculus humanus corporis] gi|212514432|gb|EEB16756.1| dicer-1, putative [Pediculus humanus corporis] Length = 2179 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 81/248 (32%), Gaps = 29/248 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ I Y F +RS L +ALTH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1914 FDIFEESIKYRFRDRSYLLQALTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 1973 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A D + R +V Q ++ Sbjct: 1974 HHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLCPSLNEVVDRFVRFQQANGHAISE 2033 Query: 125 ALYLDGGIEVAGTFVDKYWK------------------------QRALKSGKFRRDAKTE 160 YL E + K R Sbjct: 2034 EFYLIEEEECEEAEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWRVYYRIMKNEIELFS 2093 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + T + G R V VE+ G G+ + R A+ AA Sbjct: 2094 TNVPKSPIRELFELEPETAQFGKPEKLADGRRVRVSVEVFGKGIFNGIGRNYRIAKCTAA 2153 Query: 217 AEVLKREG 224 LK+ Sbjct: 2154 KCALKQLK 2161 Score = 43.4 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 2/105 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 SL+ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1639 PSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCIYENVHEGKLSHLRSKQV 1696 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S ++ R+ L + + D +E + Sbjct: 1697 SNFNLYRLGRKKMLGESMVATKFEPHDNWLPPCYYVPRELERALI 1741 >gi|269792704|ref|YP_003317608.1| ribonuclease III [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100339|gb|ACZ19326.1| ribonuclease III [Thermanaerovibrio acidaminovorans DSM 6589] Length = 226 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 103/206 (50%), Gaps = 9/206 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63 L+ R+GY FA+ LL +ALTHSS ++ Q ERLEFLGD +LGL ++ L+ Sbjct: 11 LEELQDRVGYRFADTQLLIEALTHSSFANQAQLGYCNERLEFLGDSVLGLCVAEELYRRH 70 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S +EG L+ ++ VS+ ++ R L L +RV + + AD +E+LI Sbjct: 71 PSEREGRLTKLKSTGVSSHNLARSGRVLGLDRVLRVG---KAIKGGPSEGMVADAMEALI 127 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLDGG+E A V ++ +D K+ LQE A P Y++ GP Sbjct: 128 GAVYLDGGLEAARGIVSRHVS----LDSLSSQDPKSALQEMAQRLGIPLPSYRLVEVRGP 183 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 +H F V V + G G S+R Sbjct: 184 EHRATFVVQVWLKGELMGVGNGGSRR 209 >gi|319787580|ref|YP_004147055.1| ribonuclease III [Pseudoxanthomonas suwonensis 11-1] gi|317466092|gb|ADV27824.1| ribonuclease III [Pseudoxanthomonas suwonensis 11-1] Length = 230 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 74/216 (34%), Positives = 110/216 (50%), Gaps = 6/216 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + RIG+AFA+ SLL++ALTH S ERLEFLGD ++ L+ + L+ Sbjct: 1 MARNDRTVVRDRIGHAFADPSLLQQALTHRSAG---SPHNERLEFLGDAVVNLIAAEALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + A EG L+ LV + + +AREL L + + K SI AD +E Sbjct: 58 QRWPKADEGVLTRARAELVREASLAVIARELQLGERLTLGPGELKSGGFRRDSILADALE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++AA+YLD G + V +++Q G+ +DAKT LQEW + P Y++ Sbjct: 118 AVVAAIYLDAGYDACRAHVLPWFEQSIAALPVGQPGKDAKTRLQEWLQGRGKPLPAYELV 177 Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213 SG DH F +S A+G S+R AEQ Sbjct: 178 SESGEDHAKVFLARCTLSEPPASAEGQGTSRRLAEQ 213 >gi|255548081|ref|XP_002515097.1| dicer-1, putative [Ricinus communis] gi|223545577|gb|EEF47081.1| dicer-1, putative [Ricinus communis] Length = 1543 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 82/236 (34%), Gaps = 18/236 (7%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ + LE + F +R LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1201 SIDFDALEGALNIKFQDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFT 1260 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------ 110 + + G L+ + V+ E ++VA L +R S + Sbjct: 1261 YTNLPPGRLTDLRAAAVNNENFARVAVNHKLHVHLRHGSSALEKQIRDFVREVQDELSKP 1320 Query: 111 -MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 S ++ + I A K + + Sbjct: 1321 GFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHPV 1380 Query: 170 GVTPEYKVTFRSGPDHDPRF-----TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E G ++ TV V I G+ + K+ A+++AA L Sbjct: 1381 RELQERCQQQAEGLEYKATRSGNLATVEVFIDGVQVGVAQNPQKKMAQKLAARNAL 1436 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y+ +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 985 QLKDIIHYSVPALKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1041 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1042 EGQLTRMRQQMVSNMVLYQYALIKGLQSYIQ 1072 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 6/73 (8%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAA 211 + L + + P Y+ GP H RFT V ++ + + S + A Sbjct: 1467 RQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKA 1526 Query: 212 EQVAAAEVLKREG 224 + AA +L+ Sbjct: 1527 KDSAAVLLLELLN 1539 >gi|158706456|sp|Q1DKI1|DCL1_COCIM RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease DCL1; Includes: RecName: Full=ATP-dependent helicase DCL1 Length = 1464 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 84/251 (33%), Gaps = 34/251 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + ++K++GY F LL A TH S ++ Y+RLEFLGD +L + +++ Sbjct: 1188 AQVKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1247 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS------------------------ 100 L+ ++VS + VA L L S + Sbjct: 1248 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1307 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155 + S D+VE+ I A+++D G E K + + Sbjct: 1308 PPDAWTLTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKKHFEDMTIYDTYAN 1367 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISGLAPAQGMDCSKRAAE 212 T A Y + P D R V + A+G+ S R A+ Sbjct: 1368 KHPTTYLHNRLAIDFGCSNYCLKAGEVPYVDGPGTRVLAAVIVHDEVVAEGVASSSRYAK 1427 Query: 213 QVAAAEVLKRE 223 A+ L + Sbjct: 1428 LKASEAALSKL 1438 Score = 41.8 bits (96), Expect = 0.068, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 12/66 (18%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT H + ++YERLEFLGD L + S LF Sbjct: 1028 PELALEALTKDSDNTDEHRAQQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1087 Query: 68 EGELSV 73 E Sbjct: 1088 ERGWYP 1093 >gi|119174400|ref|XP_001239561.1| hypothetical protein CIMG_09182 [Coccidioides immitis RS] Length = 1357 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 84/251 (33%), Gaps = 34/251 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + ++K++GY F LL A TH S ++ Y+RLEFLGD +L + +++ Sbjct: 1081 AQVKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1140 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS------------------------ 100 L+ ++VS + VA L L S + Sbjct: 1141 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1200 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155 + S D+VE+ I A+++D G E K + + Sbjct: 1201 PPDAWTLTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKKHFEDMTIYDTYAN 1260 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISGLAPAQGMDCSKRAAE 212 T A Y + P D R V + A+G+ S R A+ Sbjct: 1261 KHPTTYLHNRLAIDFGCSNYCLKAGEVPYVDGPGTRVLAAVIVHDEVVAEGVASSSRYAK 1320 Query: 213 QVAAAEVLKRE 223 A+ L + Sbjct: 1321 LKASEAALSKL 1331 Score = 41.8 bits (96), Expect = 0.068, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 12/66 (18%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT H + ++YERLEFLGD L + S LF Sbjct: 921 PELALEALTKDSDNTDEHRAQQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 980 Query: 68 EGELSV 73 E Sbjct: 981 ERGWYP 986 >gi|319784504|ref|YP_004143980.1| ribonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170392|gb|ADV13930.1| ribonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 251 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 120/197 (60%), Gaps = 1/197 (0%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 ++ + GY F + LLE ALTHSS + + +RLEFLGDR+LGL+++ +LF F A E Sbjct: 15 VKAKTGYVFKDIRLLETALTHSSAVKA-ATNNQRLEFLGDRVLGLVVADMLFEKFPDAPE 73 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GE++ RFN+LV A TCS++ E+ L +R S L+ + AD VE+LIAA+Y+ Sbjct: 74 GEIAPRFNALVDARTCSEIGIEMQLEDLVRADSALKMRSRGSGGNYLADAVEALIAAVYV 133 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGGIE A FV +YW+ R+ + K++LQEW + PEY + R GPDH P Sbjct: 134 DGGIEAARRFVLRYWEPRSHTVIAKPLNPKSDLQEWIAKTSDIRPEYVIDKREGPDHQPV 193 Query: 189 FTVVVEISGLAPAQGMD 205 FTV +++ G AP G Sbjct: 194 FTVSLQVRGFAPISGTG 210 >gi|167234451|ref|NP_001107840.1| Dicer-2 [Tribolium castaneum] gi|270002830|gb|EEZ99277.1| hypothetical protein TcasGA2_TC001108 [Tribolium castaneum] Length = 1623 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 94/257 (36%), Gaps = 39/257 (15%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++ +E+R+GY F NR+ L +ALTHSS S + SYERLEFLGD +L LI+ +F H Sbjct: 1370 QWREIEQRLGYTFTNRAFLLQALTHSSYSPNRITLSYERLEFLGDAVLDFLITCYIFEHC 1429 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------ 111 + G+++ +SLV+ T + + F+ + + + Sbjct: 1430 GHLEPGQVTDLRSSLVNNNTFASLVVRCGFHKFLLMMNSNLQGHIDKFADYLASKNYVID 1489 Query: 112 --------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 + D+ E+L A+YLD ++ + Y Sbjct: 1490 DEVLILLEEDEMNIAEYVDVPKVLGDIFEALAGAIYLDSNKDLKTVWRVFYKIIWREIDL 1549 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSK 208 + K ++ P++ G F G +K Sbjct: 1550 FSKNVPKNVIRRLYECHTVYPPQFSKALEVGNQKTMVSLDFMCE---GRKKRVHGFGTNK 1606 Query: 209 RAAEQVAAAEVLKREGI 225 A++ AA L+ + Sbjct: 1607 ILAKRAAAKIALRALKL 1623 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 7/92 (7%) Query: 7 STLEKRIGYAFAN--RSLLE--KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 L+ + F N +L + +ALT + + + ERLE LGD L + S + Sbjct: 1127 KQLQ-ILDVQFDNQSPNLCQIYQALTAAEANDIV--NLERLETLGDSFLKFVASLYIIFK 1183 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLA 94 F + EG+ + LVS + + +L Sbjct: 1184 FPTYNEGKSTTLKGKLVSNKNLYYLGVRKNLG 1215 >gi|194246455|ref|YP_002004094.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma mali] gi|259491959|sp|B3R075|RNC_PHYMT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|193806812|emb|CAP18239.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma mali] Length = 225 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 7/204 (3%) Query: 20 RSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 SL + ++THSS ++ + + ERLEFLGD ++ LL++ L+ + EG +S + Sbjct: 16 ISLYKMSITHSSYANENKLKKKDNERLEFLGDAVINLLMADYLYTKKEKENEGFMSKKRA 75 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 V ++ A+ + L ++I + + + SI A+ E+L A+YLD G +A Sbjct: 76 QSVCEDSLVIYAKSIQLQNYILLGKGEK--NKNINNSILANAFEALFGAIYLDLGYYIAK 133 Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 R + T Y +T G DH FT V + Sbjct: 134 KVFILIVIPRLSNIIDNIDFKTQ--LQELVQSQKKTISYYITEEKGLDHSKEFTAEVFLE 191 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVL 220 +G +K++AEQ AA VL Sbjct: 192 KKNVGRGFGKTKKSAEQDAARYVL 215 >gi|71894685|ref|YP_278793.1| dsRNA-specific ribonuclease III [Mycoplasma synoviae 53] gi|90101629|sp|Q4A589|RNC_MYCS5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|71851473|gb|AAZ44082.1| dsRNA-specific ribonuclease III [Mycoplasma synoviae 53] Length = 231 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 107/233 (45%), Gaps = 12/233 (5%) Query: 1 MSALR------YSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILG 52 M ++ + N L +A TH + S + + YERLEFLGD ++G Sbjct: 1 MEKDNQPSIEELKAFLQKNNIEYKNIDLFIEATTHKTYSKVNKNSKDYERLEFLGDSLVG 60 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 LIS F S + GELS + LV ++A++L + I+ ++ + Sbjct: 61 FLISDYCVREFSSLEPGELSRLRSKLVDKLALFKIAQKLKVEQIIKTGPKKARNEVLSSS 120 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGV 171 ++ +DVVE+LIAA+YLD G++ A F+ ++ + A K K +D K+ELQE+ Sbjct: 121 NVLSDVVEALIAAIYLDQGMQSAKDFIKSHFYEIANKAQNKPNKDPKSELQEYFQTISAE 180 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T +Y+ + F G+ SK+ AE+ AAA L + Sbjct: 181 TVKYETIEI---PNKRSFESKAWHLNKIYGTGVGLSKKDAEKNAAANALSKLK 230 >gi|307564748|ref|ZP_07627276.1| ribonuclease III [Prevotella amnii CRIS 21A-A] gi|307346470|gb|EFN91779.1| ribonuclease III [Prevotella amnii CRIS 21A-A] Length = 266 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + G+ N S + AL H S+S ++ + ERLEFLGD +L +++ +++N Sbjct: 20 YLSLYQITGFIPHNISYYKTALLHKSVSQRNKKGKLINNERLEFLGDAVLDCVVADIVYN 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F + +EG L+ + +V ET ++V+ E+ + ++ + C+ + +V + Sbjct: 80 RFPNKREGFLTNTRSKIVKRETLNKVSTEMGINKMLKQNGHTITHNCNIAGNAFEALVGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 L + + V + + ++ K VT + T Sbjct: 140 LYIDHGYNACMIFMRDHVCGCLLSIEKMAYQEMNYKSKLIEWTQKNKVSVTFDEVKTSID 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +P F V I + +G +K+ ++Q AA KR Sbjct: 200 -ENGNPIFLAQVVIGNVRCEEGKGFTKKESQQNAAKLTYKRI 240 >gi|319792225|ref|YP_004153865.1| ribonuclease iii [Variovorax paradoxus EPS] gi|315594688|gb|ADU35754.1| ribonuclease III [Variovorax paradoxus EPS] Length = 228 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 110/222 (49%), Gaps = 6/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L+ R+ ++F++ LL+ ALTH S S + ERLEFLGD +L L +S LL+ + Sbjct: 5 LVALQARLKHSFSDTRLLQLALTHRSFS---ADHNERLEFLGDSVLNLAVSHLLYTRLSA 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS +LV +T ++A EL L+ +R+ + SI AD +E+LI A Sbjct: 62 LPEGDLSRVRANLVKQDTLHRLALELQLSPLLRLGEGEARSGGPNRPSILADALEALIGA 121 Query: 126 LYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD G A + + +D KTELQEW P Y+V G Sbjct: 122 VYLDAGFAAAEALVRRLYESVEITPRMEAAAKDPKTELQEWLQGHKMKLPMYRVAATLGA 181 Query: 184 DHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224 H F V E+ L +G+ S+RA EQ AAA +L R Sbjct: 182 AHKQTFDVECEVPELGFRERGIGGSRRAGEQAAAAAMLIRLK 223 >gi|257453602|ref|ZP_05618892.1| ribonuclease III [Enhydrobacter aerosaccus SK60] gi|257449060|gb|EEV24013.1| ribonuclease III [Enhydrobacter aerosaccus SK60] Length = 275 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 108/235 (45%), Gaps = 18/235 (7%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + L ++GY F N +L AL H S + +YERLEFLGD +LG++I+ LF + Sbjct: 35 QLTALFYQMGYQFDNVNLPIMALMHRSFDSEH--NYERLEFLGDALLGVIIAEALFLRYP 92 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG LS SLV ET +A++L+L+ ++ + RK SI AD VE+LI Sbjct: 93 DYNEGRLSRLRASLVREETLVIIAKQLNLSDYLILGVGERKGGGRQRASILADSVEALIG 152 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A+YLD W + + K + +DAK+ LQE A P Y+VT Sbjct: 153 AIYLDSQNFDTVKACVLAWFEDLFEKVKEQKVLKDAKSRLQELLQAHQLALPRYEVTETI 212 Query: 182 GPDHDPRFTVVVEISGLA-------------PAQGMDCSKRAAEQVAAAEVLKRE 223 G + F V ++ + S+R AEQ A +L + Sbjct: 213 GNAPNQIFVVSCQVEIIFDNKTAKPIAPTQALVTAQGESRRIAEQRCAEAMLAKI 267 >gi|193215269|ref|YP_001996468.1| ribonuclease III [Chloroherpeton thalassium ATCC 35110] gi|193088746|gb|ACF14021.1| Ribonuclease III [Chloroherpeton thalassium ATCC 35110] Length = 269 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 66/218 (30%), Positives = 96/218 (44%), Gaps = 9/218 (4%) Query: 1 MSALRYS-TLEKRIGYAFANRSLLEKALTHSS------ISHSYQESYERLEFLGDRILGL 53 M + +E G+ +N E ALTH S S S ERLEFLGD +L L Sbjct: 34 MLSEDTKLEIESLTGFPISNVIHYETALTHRSAIDLNVYSKKKFVSNERLEFLGDAVLDL 93 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +++ L+ F EG+L+ + LV+A T + AR++ L S + VS + Sbjct: 94 VVAECLYTRFPDYDEGKLTKLRSQLVNARTLASFARKIHLGSLLIVSEAAEAIGVRDSET 153 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGV 171 AD E+L+ A+YLD F++K + + K+ L E+A A Sbjct: 154 TLADAFEALVGAIYLDSDYLQTKRFLEKKILEGIDFRELSSTDNNFKSVLLEYAQAHHLE 213 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 P Y V GP H FTV V I +G+ SK+ Sbjct: 214 IPTYTVIDEEGPSHKKVFTVAVYIGDEMLGKGVGRSKK 251 >gi|282858948|ref|ZP_06268088.1| ribonuclease III [Prevotella bivia JCVIHMP010] gi|282588330|gb|EFB93495.1| ribonuclease III [Prevotella bivia JCVIHMP010] Length = 333 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + G + S + AL H S+S ++ + ERLEFLGD +L +++ +++ Sbjct: 20 YLSLYQITGLIPHDISYYKTALLHKSVSRRNEKGKLVNNERLEFLGDAVLDCVVADIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F + +EG L+ + LV ET ++V+ E+ + ++ + C+ + +V + Sbjct: 80 RFPNKREGFLTNTRSKLVKRETLNKVSTEMGIDKMLKQNGHTVTHNCNVAGNAFEALVGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 L D + V + + + ++ K V + T + Sbjct: 140 LYLDHGYDACMNFMRNRVFGHLVNVEKMAYREMNYKSKLIEWTQKNKVTVIFDEVNTS-T 198 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +P F V I + +G +K+ ++Q AA + +R Sbjct: 199 DENGNPVFLAQVIIGNVRCEEGKGFTKKESQQNAAKQTYRRI 240 >gi|307718753|ref|YP_003874285.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM 6192] gi|306532478|gb|ADN02012.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM 6192] gi|315185644|gb|EFU19412.1| RNAse III [Spirochaeta thermophila DSM 6578] Length = 194 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 2/187 (1%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ERLEFLGD +LGL ++ L+ F +EGEL+ + +VS +T ++AR + + +FI Sbjct: 3 DNERLEFLGDAVLGLAVADYLYRTFPEKQEGELARIKSFVVSEDTLYEIARRIKVDNFIL 62 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRD 156 +S ++ AD +E++I A +LD G E A FV + K + ++D Sbjct: 63 ISKGEEYAGGRTKKALLADAMEAIIGAYFLDAGFEAARDFVLRLVVPEIEKVVENRHKKD 122 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 KT LQE+ F P Y+V + GP+H+ F + V+I G +K+ AEQ AA Sbjct: 123 YKTLLQEYVQKNFKTYPRYRVVEKLGPEHNRTFRIEVQIRDKKYGPGEGKNKKEAEQSAA 182 Query: 217 AEVLKRE 223 + + Sbjct: 183 SIAYRAI 189 >gi|255534075|ref|YP_003094447.1| ribonuclease III [Pedobacter heparinus DSM 2366] gi|255347059|gb|ACU06385.1| ribonuclease III [Pedobacter heparinus DSM 2366] Length = 242 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 9/231 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57 + L+ +G+ N +L + A H S++ + + S ERLEFLGD +LG +I+ Sbjct: 14 DKVFIRKLKNILGFVPGNATLYKMAFRHRSVAKILKNGSRSSNERLEFLGDAVLGSVIAE 73 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LLF + +EG L+ + +V+ +Q+AR++ I S+ D Sbjct: 74 LLFKSYPYKEEGFLTEMRSKIVNRANLNQLARKMGFDQLIVFDQKAVNVQTK-HHSMLGD 132 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPE 174 E+LI A+YLD G F+ K + + + K++L EW Sbjct: 133 AFEALIGAVYLDKGYNFTREFLLKRIVKPYIDIHTLELTETNFKSKLIEWCQRHGKDITF 192 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + G FT+ + G + G D +K+ AE++AA + + I Sbjct: 193 DMMENEEGES-AKLFTIQAVVEGESYGIGRDYNKKNAEKLAAEKACEALSI 242 >gi|184200693|ref|YP_001854900.1| ribonuclease III [Kocuria rhizophila DC2201] gi|183580923|dbj|BAG29394.1| ribonuclease III [Kocuria rhizophila DC2201] Length = 234 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 89/206 (43%), Gaps = 6/206 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65 L +R+G + L ALTH S ++ + ERLEFLGD +L L ++ +++ + Sbjct: 9 ELLERLGVDL-DTETLRIALTHRSYAYEHPGEVHNERLEFLGDAVLQLAVTDEIYHRYPE 67 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG L+ S+VSA + VAR L L IR+ + S SI AD E++I A Sbjct: 68 WDEGRLAKLRASVVSARALAGVARSLGLGPHIRLGKGEVRTHGSDKASILADTTEAVIGA 127 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +Y G A V + + RD KT + E T +GP Sbjct: 128 VYESLGPVPARDLVLRMMVPLLEDTRVLHEGRDWKTHIVELVAQHGLGTV-RYEVEGTGP 186 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 DH+ FT + G G SK+ Sbjct: 187 DHERHFTADAVVDGNVLGHGEGTSKK 212 >gi|284045141|ref|YP_003395481.1| ribonuclease III [Conexibacter woesei DSM 14684] gi|283949362|gb|ADB52106.1| ribonuclease III [Conexibacter woesei DSM 14684] Length = 223 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 94/207 (45%), Gaps = 7/207 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH--FDSAKEGELSVRFNSLVSA 81 + THSS + +SYERL FLGD +LGL ++T L+ D G L+ VS Sbjct: 17 RQVFTHSSWTDRRADSYERLAFLGDSVLGLAVTTHLYPRLEADRYGAGRLTKIRAQAVSG 76 Query: 82 ETCSQVARELDLASFIR----VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 +C +VA L + +R D + A V+E++I A+YLD G E Sbjct: 77 RSCMEVAERLGVPERLRAAAPQGVGQNADALVRTERVLASVIEAVIGAVYLDNGYETTAE 136 Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 V + ++ + + D K+ LQE + V + GP HD F VV E++G Sbjct: 137 AVVEAFEPEIETALEHPVDFKSALQERLARRGDVVAYSVASE-EGPPHDRVFEVVAEVAG 195 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKREG 224 G SK+ AEQ AA L+ G Sbjct: 196 NQVGSGRGRSKKDAEQEAARTALEAMG 222 >gi|116671047|ref|YP_831980.1| ribonuclease III [Arthrobacter sp. FB24] gi|116611156|gb|ABK03880.1| RNAse III [Arthrobacter sp. FB24] Length = 240 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 89/207 (42%), Gaps = 4/207 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 L KR+G + + L ALTH S ++ + ERLEFLGD ILG ++ L+ Sbjct: 6 EELLKRLGVSI-DAGTLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDALYRDNP 64 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ R +++VS + + R L + +I + + SI AD +E+LI Sbjct: 65 ALPEGDLAKRRSAVVSTRALAGIGRSLGIGEYIYLGQGEKLTDGKNKASILADTMEALIG 124 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A Y+ IE A V + + + A + Y SGP Sbjct: 125 ATYVSNDIETARQLVMRLIGPLLQDAAALGAGTDWKTSIQELAASRQLGSIYYAVEGSGP 184 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRA 210 DH F V+ I G QG SK+ Sbjct: 185 DHARTFVAVLRIGGTDYGQGAGRSKKE 211 >gi|110520367|gb|ABG74922.1| Dicer-like 1b protein [Physcomitrella patens] Length = 1695 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 89/242 (36%), Gaps = 18/242 (7%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ +S+L+K +G+ F RSLL +A+TH+S Y+RLEF+GD +L LI+ LF Sbjct: 1339 MRSIDFSSLQKNVGHEFRERSLLVEAITHASRPSLGVPCYQRLEFVGDAVLDHLITRYLF 1398 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD--- 117 + + G L+ + V+ E ++VA + +R S + + Sbjct: 1399 FKYTNLPPGRLTDLRAAAVNNENFARVAVKHSYHLHLRHGSTALETQIRNFVNDIHSELD 1458 Query: 118 ----------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 ++ + I A + + K + + Sbjct: 1459 KPGVNSFGLGDFKAPKVLGDIFESIAGALFLDARLDTHQVWKVFEPLLQPMVSPETLPIH 1518 Query: 168 KFGVTPEYKVTFRSGPDH-----DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E G ++ + TV V + G+ K+ A+++ A L + Sbjct: 1519 PVRGLQERCQQEAEGLEYKVSRAESVATVEVYVDGVQIGSTQSAQKKMAQKLGARNALVK 1578 Query: 223 EG 224 Sbjct: 1579 LK 1580 Score = 38.8 bits (88), Expect = 0.59, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 5/91 (5%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ +I Y A + ALT +S ++ SYER E L D L ++S LF F S Sbjct: 1121 QLKHQIDYPIAASKV---ALTAASGQETF--SYERAELLSDAYLEWVVSHRLFLKFPSKH 1175 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A E L S+I+ Sbjct: 1176 EGQLTRMRQKIVSNSVLYQHALEKGLQSYIQ 1206 >gi|195502701|ref|XP_002098342.1| GE24009 [Drosophila yakuba] gi|194184443|gb|EDW98054.1| GE24009 [Drosophila yakuba] Length = 2250 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 86/248 (34%), Gaps = 29/248 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1994 FDEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2053 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A F R S DV IQ + S+ Sbjct: 2054 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2113 Query: 125 ALYLDGGIEVAG---------------------TFVDKYWKQRALKSGKFRRDAKTELQE 163 YL E + E Sbjct: 2114 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2173 Query: 164 WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + K + T + G R V V++ +G+ + R A+ AA Sbjct: 2174 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAA 2233 Query: 217 AEVLKREG 224 L++ Sbjct: 2234 KCALRQLK 2241 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1724 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1781 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1782 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1822 >gi|94311354|ref|YP_584564.1| ribonuclease III [Cupriavidus metallidurans CH34] gi|189043335|sp|Q1LKN1|RNC_RALME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|93355206|gb|ABF09295.1| RNase III [Cupriavidus metallidurans CH34] Length = 256 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 65/209 (31%), Positives = 102/209 (48%), Gaps = 6/209 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L++R+GY F+ LL++ALTH S S + ERLEFLGD +L ++ +LF F Sbjct: 1 MTLDALQQRLGYRFSKPELLQQALTHRSHS---AQHNERLEFLGDSVLNCAVADMLFGMF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV + ++A+ L L+ +R+ K SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQALYEIAQMLQLSDALRLGEGELKSGGFRRPSILADALEAIV 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LD G + A + K + + +DAKT LQE+ P+Y V Sbjct: 118 GAVFLDAGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKR 209 G H +F V + L G S+R Sbjct: 178 GAAHSQQFEVECIVPKLEVRVFGTGASRR 206 >gi|260220751|emb|CBA28629.1| Ribonuclease 3 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 224 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 78/210 (37%), Positives = 114/210 (54%), Gaps = 6/210 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L++R+ + F+N SLL +ALTH S S + YERLEFLGD +LGL IS LL++ + Sbjct: 2 TALQQRLQHQFSNVSLLSRALTHRSFS---ADHYERLEFLGDSVLGLAISDLLYSRLGNL 58 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS +LV ET Q+A +L L +++ + SI AD +E++I A+ Sbjct: 59 PEGDLSRVRANLVRQETLHQLALKLGLPDVLKLGEGEMRSGGPKRASILADALEAIIGAV 118 Query: 127 YLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLD G A V + ++ + + +DAKTELQEW + P Y V G Sbjct: 119 YLDAGFAKAQALVHRLFEAVEINPQMQAIGKDAKTELQEWLQGRKMKLPLYTVVGTIGAA 178 Query: 185 HDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 H F V E+ L ++ G+ S+RA EQ Sbjct: 179 HKQSFDVECEVPELRLSERGIGGSRRAGEQ 208 >gi|256027058|ref|ZP_05440892.1| ribonuclease III [Fusobacterium sp. D11] gi|289765042|ref|ZP_06524420.1| ribonuclease III [Fusobacterium sp. D11] gi|289716597|gb|EFD80609.1| ribonuclease III [Fusobacterium sp. D11] Length = 234 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 113/231 (48%), Gaps = 9/231 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ Sbjct: 1 MK--NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + +A EG ++ +VS ++++R++ + F+ +S SI A Sbjct: 59 EYLYKSYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+++ A+Y+D ++ A F + KQ + D K+ LQE+ +F P Sbjct: 119 DSFEAILGAVYIDSNLDDARNFTLSHIKQYIDHIEEDEDILDFKSILQEYVQKEFRTVPT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 YK+ GPDH F + V + K+A EQ++A + + G+ Sbjct: 179 YKLIAERGPDHMKEFEIQVIVGNYREKAVAKNKKKA-EQLSAKALCIKLGV 228 >gi|294675193|ref|YP_003575809.1| ribonuclease III [Prevotella ruminicola 23] gi|294472646|gb|ADE82035.1| ribonuclease III [Prevotella ruminicola 23] Length = 342 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 107/226 (47%), Gaps = 11/226 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 +S+L + +G+ N + AL H SI + + ERLEFLGD IL + +++ Sbjct: 21 FSSLYEILGFYPHNIEYYKMALMHKSIRKRNDKGKPLNNERLEFLGDAILDAAVGYIVYR 80 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H++ +EG L+ + LVS ET ++A E+ L++ + + S + ++ + E+ Sbjct: 81 HYEGKREGFLTNTRSKLVSRETLGKLATEMRLSNLLISAG----HSTSHNSYVEGNAFEA 136 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G E F + + + K + K++L EW+ Sbjct: 137 LVGAIYLDRGYEACLWFFENQVLGKFIDIDKVAFKEVNFKSKLLEWSQKNRVRLEYKLTK 196 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + + P FT +V I G+ G SK+ A+Q A+ + L+R Sbjct: 197 QKKDENGSPVFTYMVIIEGVNGESGSGYSKKEAQQKASKDTLQRLK 242 >gi|282877263|ref|ZP_06286095.1| RNase3 domain protein [Prevotella buccalis ATCC 35310] gi|281300604|gb|EFA92941.1| RNase3 domain protein [Prevotella buccalis ATCC 35310] Length = 350 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 11/226 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 YS+L + IG+ + S + AL H S+ + + ERLEFLGD IL + +++ Sbjct: 20 YSSLYRIIGFYPHDISYYKLALMHKSVMRRNAKGKPVNNERLEFLGDAILDATVGHIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV T +++A E+ + I S S + + + E+ Sbjct: 80 HFPGKREGFLTNTRSKLVQRSTLNKLANEMGICKLILSSG----RNASHNSYMGGNAFEA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178 L+ A+YLD G + F+ + L K + K++L EW+ + Sbjct: 136 LVGAIYLDRGYDACMRFMKDRILKEMLNIDKVAYKEVNFKSKLIEWSQKNKVKINFKLLN 195 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + +P F E+ G+ G SK+ ++Q+A+ L++ Sbjct: 196 QGQDKNGNPVFKYAAELEGIEGCSGEGFSKKESQQLASKLTLEQLK 241 >gi|149278306|ref|ZP_01884444.1| ribonuclease III [Pedobacter sp. BAL39] gi|149231072|gb|EDM36453.1| ribonuclease III [Pedobacter sp. BAL39] Length = 242 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 9/229 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57 + + L+ +G+ N L + A H S++ + + S ERLEFLGD ILG +++ Sbjct: 14 NKVFIKKLKNILGFVPGNTILYQMAFRHRSVAKVLKNGSRSSNERLEFLGDAILGSVVAE 73 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LLF ++ +EG L+ + +V+ +Q+AR++ I S+ D Sbjct: 74 LLFKNYPYKEEGFLTEMRSKIVNRANLNQLARKMGFDQLIVFDQKTVNVQTK-HHSMLGD 132 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPE 174 E+LI A+YLD G F+ K + + + K++L EW Sbjct: 133 AFEALIGAIYLDKGYNFTKDFLLKRIIKPYVDIHTLELTETNFKSKLIEWCQRHGKDVIF 192 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V G D FT+ I G + G D +K+ AE++AA + + Sbjct: 193 EMVQNSEG-DSPKLFTISAVIDGESVGIGRDYNKKNAEKLAAEKACETL 240 >gi|320093928|ref|ZP_08025763.1| ribonuclease III [Actinomyces sp. oral taxon 178 str. F0338] gi|319979140|gb|EFW10648.1| ribonuclease III [Actinomyces sp. oral taxon 178 str. F0338] Length = 239 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 85/206 (41%), Gaps = 5/206 (2%) Query: 19 NRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + +LL AL H S ++ + ERLEFLGD +L ++I+ LF+ + E +LS Sbjct: 27 DGALLSLALVHRSYANEAGGIANNERLEFLGDSVLSVVIAERLFHDYPDVAESDLSRMRA 86 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + VS + AR + L ++ + SI +D E+LI A YL G++ A Sbjct: 87 ATVSQAPLAAAARRIGLGDYVYLGKGESLHGGRDKDSILSDTFEALIGATYLTHGLQAAR 146 Query: 137 TFV-DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V ++ + L + G+ GPDH FT I Sbjct: 147 RVVLERLSFLLEDAQERGHHQDWKTLLVEYSQEHGLGEVSYEVEGEGPDHRRVFTARAFI 206 Query: 196 SGL--APAQGMDCSKRAAEQVAAAEV 219 +G+ G SK+ AE AA Sbjct: 207 AGIDGPVGSGRATSKKHAENAAAQNA 232 >gi|195109134|ref|XP_001999145.1| GI24348 [Drosophila mojavensis] gi|193915739|gb|EDW14606.1| GI24348 [Drosophila mojavensis] Length = 2256 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 88/251 (35%), Gaps = 35/251 (13%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 2000 FEEFEASLGYTFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2059 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99 G L+ ++LV+ + +A + R Sbjct: 2060 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQENGHCISE 2119 Query: 100 ------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 + + DV ES+ A++LD + + + + Sbjct: 2120 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVFSNMMKPEIEQFS 2179 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 K+ ++E K R V V++ +G+ + R A+ Sbjct: 2180 NSVPKSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKC 2236 Query: 214 VAAAEVLKREG 224 AA L++ Sbjct: 2237 TAAKCALRQLK 2247 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 2/110 (1%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1717 ELVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1774 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 LS + V+ ++ R L ++ + D +E Sbjct: 1775 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1824 >gi|296117605|ref|ZP_06836189.1| ribonuclease III [Corynebacterium ammoniagenes DSM 20306] gi|295969336|gb|EFG82577.1| ribonuclease III [Corynebacterium ammoniagenes DSM 20306] Length = 244 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 6/209 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 A+ + L + ++ L ALTH S ++ + + ERLEFLGD +LGL I+ L+ Sbjct: 19 AIDTAPLLASLNVELEDK-YLRLALTHRSFANEHGHLPNNERLEFLGDAVLGLSIAARLY 77 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + E ++S S+VS + VARE+ L +FI + SI AD E Sbjct: 78 EKYPTRPESDISKMRASIVSRFGLADVAREIGLGAFILLGKGEANSNGRDKDSILADTTE 137 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +L A+YL G E A + + + Q+ S + D KT LQE + TP+Y T Sbjct: 138 ALFGAIYLQHGFETARRVILELFAQKVDAAVSTRNHMDWKTTLQELCAERKLPTPDYSAT 197 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +GP+HD FT V + G +G+ + Sbjct: 198 S-TGPEHDQLFTAQVHVDGQLLGEGVGPN 225 >gi|195443910|ref|XP_002069632.1| GK11626 [Drosophila willistoni] gi|194165717|gb|EDW80618.1| GK11626 [Drosophila willistoni] Length = 2281 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 88/251 (35%), Gaps = 35/251 (13%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 2025 FEEFEAILGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2084 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99 G L+ ++LV+ + +A F R Sbjct: 2085 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISE 2144 Query: 100 ------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 + + DV ES+ A++LD + + + + Sbjct: 2145 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMKPEIEQFS 2204 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 K+ ++E K R V V++ +G+ + R A+ Sbjct: 2205 NSVPKSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKC 2261 Query: 214 VAAAEVLKREG 224 AA L++ Sbjct: 2262 TAAKCALRQLK 2272 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1748 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1805 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1806 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1846 >gi|290343597|ref|YP_003494964.1| hypothetical protein OTV1_125 [Ostreococcus tauri virus 1] gi|260161012|emb|CAY39713.1| hypothetical protein OTV1_125 [Ostreococcus tauri virus 1] Length = 240 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 6/221 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTL 58 +E+ +G + S ++A TH S Y++ S+E LEF+GD +LG +I+ Sbjct: 1 MNFNQQDIEQLVGTKIRDLSFYQRAFTHKSALKEYEQFNVSFETLEFMGDSVLGFIITKF 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF+ ++ +EG L+ LV +ET + +A +L L + + ++ + I DV Sbjct: 61 LFDRYEERQEGFLTKARTKLVRSETLAAIALKLGLNKLVLMDEKGTRNGWNNNPKILEDV 120 Query: 119 VESLIAALYLD-GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+L+ A+Y+D G + + Y + + D + + H + P + Sbjct: 121 FEALVGAIYMDLGLLHAKQFVLRIYNDPKYIDLNSIMVDDNFKDKLMRHCQVNNLPLPEY 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 S + + F V I+G +G SK+ AEQ+AA Sbjct: 181 EVVSHWEGN--FYVDALINGRFCGRGQAKSKKQAEQLAAKA 219 >gi|320037410|gb|EFW19347.1| hypothetical protein CPSG_03731 [Coccidioides posadasii str. Silveira] Length = 1465 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 83/251 (33%), Gaps = 34/251 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + ++K++GY F LL A TH S ++ Y+RLEFLGD +L + +++ Sbjct: 1189 AQVKKKLGYVFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1248 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS------------------------ 100 L+ ++VS + VA L L S + Sbjct: 1249 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1308 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155 S + S D+VE+ I A+++D E K + + Sbjct: 1309 SPDAWTLTSDPPKCLPDMVEAYIGAIFIDSNFSFEVVEEFFQKFLKKHFEDMTIYDTYAN 1368 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISGLAPAQGMDCSKRAAE 212 T A Y + P D R V + +G+ S R A+ Sbjct: 1369 KHPTTYLHNRLAIDFGCSNYCLKAGEVPYVDGPGTRVLAAVIVHDEVVTEGVASSSRYAK 1428 Query: 213 QVAAAEVLKRE 223 A+ L + Sbjct: 1429 LKASEAALSKL 1439 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT H + ++YERLEFLGD L + S LF Sbjct: 993 PELALEALTKDSDNTDEHRAQQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1052 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 E + V+ LV + + A L FIR Sbjct: 1053 EYDFHVKRMCLVCNQNLFKTAVRFKLYEFIR 1083 >gi|303314275|ref|XP_003067146.1| Type III restriction enzyme, res subunit family protein [Coccidioides posadasii C735 delta SOWgp] gi|240106814|gb|EER25001.1| Type III restriction enzyme, res subunit family protein [Coccidioides posadasii C735 delta SOWgp] Length = 1487 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 83/251 (33%), Gaps = 34/251 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + ++K++GY F LL A TH S ++ Y+RLEFLGD +L + +++ Sbjct: 1211 AQVKKKLGYVFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1270 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS------------------------ 100 L+ ++VS + VA L L S + Sbjct: 1271 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1330 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155 S + S D+VE+ I A+++D E K + + Sbjct: 1331 SPDAWTLTSDPPKCLPDMVEAYIGAIFIDSNFSFEVVEEFFQKFLKKHFEDMTIYDTYAN 1390 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISGLAPAQGMDCSKRAAE 212 T A Y + P D R V + +G+ S R A+ Sbjct: 1391 KHPTTYLHNRLAIDFGCSNYCLKAGEVPYVDGPGTRVLAAVIVHDEVVTEGVASSSRYAK 1450 Query: 213 QVAAAEVLKRE 223 A+ L + Sbjct: 1451 LKASEAALSKL 1461 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT H + ++YERLEFLGD L + S LF Sbjct: 1015 PELALEALTKDSDNTDEHRAQQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1074 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 E + V+ LV + + A L FIR Sbjct: 1075 EYDFHVKRMCLVCNQNLFKTAVRFKLYEFIR 1105 >gi|304389333|ref|ZP_07371298.1| ribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315655502|ref|ZP_07908401.1| ribonuclease III [Mobiluncus curtisii ATCC 51333] gi|315656591|ref|ZP_07909478.1| ribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304327451|gb|EFL94684.1| ribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315490157|gb|EFU79783.1| ribonuclease III [Mobiluncus curtisii ATCC 51333] gi|315492546|gb|EFU82150.1| ribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 249 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 10/212 (4%) Query: 7 STLEKRI---GYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTL 58 +TLE+ + G + LL A+TH S +H + ++ ERLEFLGD +L ++++ Sbjct: 19 ATLERLLADWG-QPVDTELLVVAMTHRSFAHEHGKTGSTGTNERLEFLGDAVLQIVVTEY 77 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF +F EGEL+ + VS ++VAR L L +I + + SI +D Sbjct: 78 LFRNFPDVPEGELAPMRAATVSQTPLAEVARRLHLGDYILLGIGEDRQGGREKDSILSDT 137 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKV 177 +E+LI A YL G+E ++++ ++ + + + A V Sbjct: 138 LEALIGASYLTSGLESTRVTIERHLRRYLRNAPRRAVGMDWKTHLSEFAAANSLGEPEYV 197 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SGPDH FT + I+G +G SK+ Sbjct: 198 VQGSGPDHARVFTAQIRIAGEVLGEGQGTSKK 229 >gi|237743502|ref|ZP_04573983.1| ribonuclease III [Fusobacterium sp. 7_1] gi|260496871|ref|ZP_05815991.1| ribonuclease III [Fusobacterium sp. 3_1_33] gi|229433281|gb|EEO43493.1| ribonuclease III [Fusobacterium sp. 7_1] gi|260196613|gb|EEW94140.1| ribonuclease III [Fusobacterium sp. 3_1_33] Length = 234 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 113/231 (48%), Gaps = 9/231 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ Sbjct: 1 MK--NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + +A EG ++ +VS ++++R++ + F+ +S SI A Sbjct: 59 EYLYKSYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+++ A+Y+D ++ A F + KQ + D K+ LQE+ +F P Sbjct: 119 DSFEAILGAVYIDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 YK+ GPDH F + V + K+A EQ++A + + G+ Sbjct: 179 YKLIAERGPDHMKEFEIQVIVGNYREKAVAKNKKKA-EQLSAKALCIKLGV 228 >gi|298346956|ref|YP_003719643.1| ribonuclease III [Mobiluncus curtisii ATCC 43063] gi|298237017|gb|ADI68149.1| ribonuclease III [Mobiluncus curtisii ATCC 43063] Length = 249 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 10/212 (4%) Query: 7 STLEKRI---GYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTL 58 +TLE+ + G + LL A+TH S +H + ++ ERLEFLGD +L ++++ Sbjct: 19 ATLERLLADWG-QPVDTELLVVAMTHRSFAHEHGKTGSTGTNERLEFLGDAVLQIVVTEY 77 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF +F EGEL+ + VS ++VAR L L +I + + SI +D Sbjct: 78 LFRNFPDVPEGELAPMRAATVSQTPLAEVARRLHLGDYILLGIGEDRQGGREKDSILSDT 137 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKV 177 +E+LI A YL G+E ++++ ++ + + + A V Sbjct: 138 LEALIGASYLTSGLESTRVTIERHLRRYLRNAPRRAVGMDWKTHLSEFAAANSLGEPEYV 197 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SGPDH FT + I+G +G SK+ Sbjct: 198 VQGSGPDHARVFTAQIRIAGEVLGEGQGTSKK 229 >gi|332187768|ref|ZP_08389502.1| ribonuclease III [Sphingomonas sp. S17] gi|332012118|gb|EGI54189.1| ribonuclease III [Sphingomonas sp. S17] Length = 235 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 87/204 (42%), Positives = 117/204 (57%), Gaps = 3/204 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L + G A + + +ALTH S E+YERLEFLGDR+LGL+++ L+ F + E Sbjct: 22 LTQIFGRAPQDSAPFHRALTHGS---QAAENYERLEFLGDRVLGLIMAEWLWEQFPNEPE 78 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS R NSLV+ C+ VAR+L + +R+ R D S ++ DV+E+LI A Y Sbjct: 79 GQLSRRLNSLVTGPVCADVARDLGVRDHLRLGKQARDDGASDSDNVLGDVMEALIGAWYR 138 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 + G++ A FV K W R GK + K+ LQEWA A PEY+VT RSGP H PR Sbjct: 139 EAGLDAARAFVRKAWGDRVHSQGKAPQHPKSALQEWAAAHNRKAPEYEVTDRSGPHHAPR 198 Query: 189 FTVVVEISGLAPAQGMDCSKRAAE 212 FTV V I A A +K+ AE Sbjct: 199 FTVTVRIGRTAEASASGANKQEAE 222 >gi|242078881|ref|XP_002444209.1| hypothetical protein SORBIDRAFT_07g015020 [Sorghum bicolor] gi|241940559|gb|EES13704.1| hypothetical protein SORBIDRAFT_07g015020 [Sorghum bicolor] Length = 291 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 92/239 (38%), Gaps = 15/239 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTL 58 MSA + +E +GY FA++SL+E ALTH S + ++YERLE+LGD +L L+S Sbjct: 22 MSAEDVAAIEAVLGYEFADKSLVELALTHGSFYFPYRPGDTYERLEYLGDGVLTCLMSRE 81 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 +F ++ + G L+ + V E ++VA + L F+R + +D Sbjct: 82 VFRNYRTLPPGPLTRLRAANVDTEKLARVAVDRGLHRFLRHKAPKLQDQICLFIEEMRKY 141 Query: 119 VESLIA-------ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 + + A + + ++ + + D L+ Sbjct: 142 PVHSNGLLDPPKVLCDIVESLIGAIYWDSDFNQEEVWRVFRTLADPLIGLETLGKHPVTE 201 Query: 172 TPEYKVTFRSG-----PDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKREG 224 E+ R G + D V V I G A K A+ AA L + Sbjct: 202 LFEFCQKTRRGVKFVKDEWDKSLKVEVLIDGELVASATYGPKKEIAQNRAAKAALDKLK 260 >gi|260462323|ref|ZP_05810531.1| ribonuclease III [Mesorhizobium opportunistum WSM2075] gi|259031817|gb|EEW33085.1| ribonuclease III [Mesorhizobium opportunistum WSM2075] Length = 237 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 100/203 (49%), Positives = 128/203 (63%), Gaps = 1/203 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDS 65 L +R G+AFA+R L++ALTH+S + YER EFLGDR+LGL+++ +L F Sbjct: 14 EALVERTGHAFADRQRLQRALTHASARGANAGIDYERFEFLGDRVLGLVVADMLLAAFPD 73 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EGELS+R N+LV+AE S +A + L IR SD+R +++AD +ESLIA Sbjct: 74 AAEGELSLRLNALVNAEALSDIAEHIGLPDLIRAGSDIRGLDGRKRVNLRADALESLIAV 133 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LYLDGG+E A F+ KYW R+ SG RRDAKTELQEWAH P Y++ R GPDH Sbjct: 134 LYLDGGLEAARAFIHKYWLPRSQASGAARRDAKTELQEWAHQAASAVPAYQIDSREGPDH 193 Query: 186 DPRFTVVVEISGLAPAQGMDCSK 208 DP FTV V + PA G SK Sbjct: 194 DPLFTVSVRVGTFQPAVGSGRSK 216 >gi|325954697|ref|YP_004238357.1| ribonuclease 3 [Weeksella virosa DSM 16922] gi|323437315|gb|ADX67779.1| Ribonuclease 3 [Weeksella virosa DSM 16922] Length = 256 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 90/219 (41%), Gaps = 8/219 (3%) Query: 11 KRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +G + + E+A TH S ++ERLEFLGD +LG + L+N Sbjct: 29 QLVGVKPKDIRVYEEAFTHRSAQRKDDKGQNVNFERLEFLGDALLGASAAVHLYNSAPDR 88 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG L+ + +VS ++V+R+L L F+ +++L + V ++ Sbjct: 89 QEGYLTKMRSKIVSRRQLNEVSRKLHLTEFLIPANNLANLGEDVNGDLLEAFVGAIYVDQ 148 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 L + +V + K + K+ + EW+ ++ D Sbjct: 149 GLLITEKFITRYVIAPYITDLEKLEQRIASHKSLILEWSQKTKNSLRFNTFEEQNAED-I 207 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKR 222 F VV ++ ++G SK+ AE+ AA L++ Sbjct: 208 QVFVSVVRLNEKVISKGRGTSKKKAEENAAKRAYYSLQK 246 >gi|254490771|ref|ZP_05103954.1| ribonuclease III [Methylophaga thiooxidans DMS010] gi|224463943|gb|EEF80209.1| ribonuclease III [Methylophaga thiooxydans DMS010] Length = 227 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 106/224 (47%), Gaps = 8/224 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M R L K++ F LL +ALTH S ++ ERLE+LGD IL +I+ LF Sbjct: 1 MITQRQKALCKQLEITFKKTDLLLQALTHRSAD---PKNNERLEYLGDAILSFVIAEELF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N F KEG+LS SLV ET +++AREL L + + K SI AD VE Sbjct: 58 NRFPQVKEGKLSRLRASLVKGETLAELARELKLGDVLILGPGELKSGGFRRESILADAVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ ALYLDGG+E + + +++R + + +D KT LQE ++ P Y V Sbjct: 118 AILGALYLDGGLESVKALILRLYQERLDNIDVTETVKDPKTRLQELLQSRKQPLPIYSVK 177 Query: 179 FRSGPDHDPRFT--VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P F V + S R AE+ AA L Sbjct: 178 EVKTDKKHPAFEASCQVTLLDKVV-VAQGSSHRKAEKKAAERAL 220 >gi|15150411|gb|AAK84929.1| SD01621p [Drosophila melanogaster] Length = 865 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 88/251 (35%), Gaps = 35/251 (13%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 609 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 668 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99 G L+ ++LV+ + +A F R Sbjct: 669 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISE 728 Query: 100 ------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 + + DV ES+ A++LD + + + Sbjct: 729 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 788 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 K+ ++E K R V V++ +G+ + R A+ Sbjct: 789 NSVPKSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKC 845 Query: 214 VAAAEVLKREG 224 AA L++ Sbjct: 846 TAAKCALRQLK 856 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 339 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 396 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 397 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 437 >gi|17738129|ref|NP_524453.1| Dicer-1 [Drosophila melanogaster] gi|51316117|sp|Q9VCU9|DCR1_DROME RecName: Full=Endoribonuclease Dcr-1; Short=Protein dicer-1 gi|7300916|gb|AAF56056.1| Dicer-1 [Drosophila melanogaster] Length = 2249 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 88/251 (35%), Gaps = 35/251 (13%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1993 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2052 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99 G L+ ++LV+ + +A F R Sbjct: 2053 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISE 2112 Query: 100 ------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 + + DV ES+ A++LD + + + Sbjct: 2113 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2172 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 K+ ++E K R V V++ +G+ + R A+ Sbjct: 2173 NSVPKSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKC 2229 Query: 214 VAAAEVLKREG 224 AA L++ Sbjct: 2230 TAAKCALRQLK 2240 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1723 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1780 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1781 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1821 >gi|47459246|ref|YP_016108.1| ribonuclease III [Mycoplasma mobile 163K] gi|81614213|sp|Q6KHN3|RNC_MYCMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|47458575|gb|AAT27897.1| ribonuclease III [Mycoplasma mobile 163K] Length = 246 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 9/231 (3%) Query: 1 MSAL-RYSTLEKRI---GYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLL 54 M+ + LE + F + +ALTH + ++ + ESY+ LEF+GD IL + Sbjct: 1 MNKKTKIEGLENFLTLNNIIFKDIKYYIQALTHKTYANEHANIESYDILEFIGDAILQMK 60 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 S +F HF + EGE S+ V + S+++++L L+ + +S I Sbjct: 61 SSIFIFQHFQNITEGEASLIRAKNVCSSGLSELSKKLGLSKLLLISKGSEHL--RENVKI 118 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTP 173 AD+ ES +AA+YLD G E F+ + + + + +D K+ QE+ + Sbjct: 119 NADLFESFVAAIYLDLGDEKLEEFLKEIFYPYISTTNLESIKDPKSSFQEYIQSYSNEII 178 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 EYK+T F + +G+ G +K+ AE+ AA L+ Sbjct: 179 EYKITQLENELRSELFKAELMHNGITYGVGFGKTKKVAEEEAATRALETLK 229 >gi|119489618|ref|ZP_01622378.1| Ribonuclease III [Lyngbya sp. PCC 8106] gi|119454530|gb|EAW35678.1| Ribonuclease III [Lyngbya sp. PCC 8106] Length = 233 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 13/210 (6%) Query: 16 AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSA-KEGEL 71 + L +ALTH S + + ++ ERLEFLGD +LG L+ LL+ ++ E ++ Sbjct: 6 TIKDEKLRLRALTHRSYVNEHPGDGKNNERLEFLGDAVLGFLVGELLYTYYPEELSEAKM 65 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + +LV + + A +L + +R+ KD ++ +D E+ I A YLD G Sbjct: 66 TRLRAALVDEQQLGKFAAQLGIGEIMRLGKGAIKDGGYQNPALLSDTFEAYIGAYYLDAG 125 Query: 132 IEVAGTFVDKYW---------KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 IE F+ + K+ + D+K Q+WA A+FG P+Y + +SG Sbjct: 126 IEKVREFITPLFTKVANEILGMHTEEKNSEHLIDSKNRFQQWALAEFGENPKYFIIDQSG 185 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 PDH F V + G K+ A+ Sbjct: 186 PDHAKEFIAEVRVKDQVYGLGQGRRKQDAQ 215 >gi|332830459|gb|EGK03087.1| hypothetical protein HMPREF9455_01337 [Dysgonomonas gadei ATCC BAA-286] Length = 273 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y + K +G+ N +L E+AL H S S ++ + ERLEFLGD IL +++ ++F Sbjct: 20 YVSFCKILGFYPYNITLYEQALLHKSSSIKLKDGRWINNERLEFLGDAILDAIVADIVFK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F+ KEG L+ + +V ET +++A E+ + I+ S+ + + + Sbjct: 80 EFEYKKEGFLTNMRSKIVQRETLNRLALEIGIDKLIKTSTRNTTPNTHMYGNALEAFIGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + + + + + + K+ L EW+ + + Sbjct: 140 IYLDQGYRAAKRFVFERLIQEHLNIESVA-ELEANYKSRLIEWSQKQKISVSFDLIDSFV 198 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ P F V I G G SK+ ++Q AA E + Sbjct: 199 DENNTPIFKTAVIIMGEQAGLGTGYSKKESQQKAAKEAYNKL 240 >gi|282881269|ref|ZP_06289955.1| ribonuclease III [Prevotella timonensis CRIS 5C-B1] gi|281304859|gb|EFA96933.1| ribonuclease III [Prevotella timonensis CRIS 5C-B1] Length = 347 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 YS+L IG+ + S + AL H S+ + + ERLEFLGD +L ++ +++ Sbjct: 20 YSSLYNIIGFYPHDISYYKLALMHKSVMRRNAKGRPVNNERLEFLGDAVLDAIVGHIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV T +++A E+ + + S + +V + Sbjct: 80 HFPGKREGFLTNTRSKLVQRSTLNKLANEMGICKLLLSSGRSSSHNSYVGGNAFEALVGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + D + + + K K++L EW+ + + Sbjct: 140 IYLDRGYDACMRFMKNRILSEMLNIDKVAYKEVNF-KSKLIEWSQKNRVKIHFNLLEQKK 198 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + +P F +VE+ G+ G SK+ ++Q+A+ L++ Sbjct: 199 DENGNPIFKYLVELEGIEGCSGEGFSKKESQQLASKLTLEQLK 241 >gi|194744012|ref|XP_001954492.1| GF18290 [Drosophila ananassae] gi|190627529|gb|EDV43053.1| GF18290 [Drosophila ananassae] Length = 2252 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 87/251 (34%), Gaps = 35/251 (13%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1996 FEEFEASLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2055 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99 G L+ ++LV+ + +A F R Sbjct: 2056 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2115 Query: 100 ------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 + + DV ES+ A++LD + + + Sbjct: 2116 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVYSNMMSPEIEQFS 2175 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 K+ ++E K R V V++ +G+ + R A+ Sbjct: 2176 NSVPKSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKC 2232 Query: 214 VAAAEVLKREG 224 AA L++ Sbjct: 2233 TAAKCALRQLK 2243 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1727 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1784 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1785 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1825 >gi|195143531|ref|XP_002012751.1| GL23778 [Drosophila persimilis] gi|194101694|gb|EDW23737.1| GL23778 [Drosophila persimilis] Length = 2278 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 85/248 (34%), Gaps = 29/248 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 2022 FEEFEASLGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2081 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A F R S DV IQ + S+ Sbjct: 2082 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2141 Query: 125 ALYLDGGIEVAG---------------------TFVDKYWKQRALKSGKFRRDAKTELQE 163 YL E + E Sbjct: 2142 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2201 Query: 164 WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + K + T + G R V V++ +G+ + R A+ AA Sbjct: 2202 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAA 2261 Query: 217 AEVLKREG 224 L++ Sbjct: 2262 KCALRQLK 2269 Score = 42.2 bits (97), Expect = 0.047, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 2/110 (1%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1738 ELVGHPGPSPSVILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1795 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 LS + V+ ++ R L ++ + D +E Sbjct: 1796 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1845 >gi|74318104|ref|YP_315844.1| ribonuclease III [Thiobacillus denitrificans ATCC 25259] gi|90101653|sp|Q3SH50|RNC_THIDA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|74057599|gb|AAZ98039.1| ribonuclease III [Thiobacillus denitrificans ATCC 25259] Length = 226 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 65/211 (30%), Positives = 99/211 (46%), Gaps = 7/211 (3%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M+ L++ +GY F+ LL++ALTH S + ERLEFLGD +L ++ L Sbjct: 1 MNNALLDARLQQALGYTFSRSGLLQQALTHRSYG---ALNNERLEFLGDSVLNCSVARAL 57 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ F EG LS +LV ET +++A L L +R+ K SI AD + Sbjct: 58 YDAFPDLPEGSLSRLRANLVRQETLAEIAGALRLGDSLRLGEGELKSGGFRRPSILADAL 117 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 ESL A++LD G + A V + + + +D KT LQE ++ PEY++ Sbjct: 118 ESLFGAVFLDAGFDEAQRVVRRLFDPLVAQIDPKASGKDPKTRLQEILQSRRLPLPEYRL 177 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQ-GMDCS 207 G HD F V ++ + G S Sbjct: 178 VGTEGEAHDQSFIVECLLAKPVLSTRGTGKS 208 >gi|125773725|ref|XP_001358121.1| GA18437 [Drosophila pseudoobscura pseudoobscura] gi|54637856|gb|EAL27258.1| GA18437 [Drosophila pseudoobscura pseudoobscura] Length = 2280 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 85/248 (34%), Gaps = 29/248 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 2024 FEEFEASLGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2083 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A F R S DV IQ + S+ Sbjct: 2084 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2143 Query: 125 ALYLDGGIEVAG---------------------TFVDKYWKQRALKSGKFRRDAKTELQE 163 YL E + E Sbjct: 2144 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2203 Query: 164 WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + K + T + G R V V++ +G+ + R A+ AA Sbjct: 2204 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAA 2263 Query: 217 AEVLKREG 224 L++ Sbjct: 2264 KCALRQLK 2271 Score = 42.2 bits (97), Expect = 0.047, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 2/110 (1%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1740 ELVGHPGPSPSVILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1797 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 LS + V+ ++ R L ++ + D +E Sbjct: 1798 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1847 >gi|325286163|ref|YP_004261953.1| ribonuclease III [Cellulophaga lytica DSM 7489] gi|324321617|gb|ADY29082.1| ribonuclease III [Cellulophaga lytica DSM 7489] Length = 246 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 85/212 (40%), Gaps = 6/212 (2%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAK 67 +G+ N S+ KA H S + ++ +YERLEFLGD +LG +IS L+N Sbjct: 25 ILGFKPKNISIYRKAFLHRSANKKDKDGNPLNYERLEFLGDSMLGTIISKYLYNEVPLGD 84 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ + +VS E +++ ++L+L ++ + ++ +V ++ Sbjct: 85 EGYLTKMRSKIVSREHLNELGKDLELIKYVESRISKSHFGDNIHGNVFEALVGAIYLDRG 144 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 + V + G+ ++ K Y V +G D Sbjct: 145 YQYCEKFINERVIGPYVDIEQLEGRVISYKSLVIEWCQKQK--KQFNYNVYEDTGNDTLK 202 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 F V + I A+ SK+ AE+ A+ Sbjct: 203 HFAVKLSIDNNVIAKARATSKKKAEEAASKRA 234 >gi|260576288|ref|ZP_05844280.1| ribonuclease III [Rhodobacter sp. SW2] gi|259021556|gb|EEW24860.1| ribonuclease III [Rhodobacter sp. SW2] Length = 231 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 78/198 (39%), Positives = 108/198 (54%), Gaps = 1/198 (0%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + RIG+ F LL +A+THSSIS + +RLEFLGDR+LGL+++ L Sbjct: 1 MKLSAELQAFCGRIGHVFRQPELLLRAVTHSSISSKTRPDNQRLEFLGDRVLGLVMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 +A EG+L+ RFN+LV E C+ VAR+L L +++ ++ D + Sbjct: 61 LTADTAASEGQLAPRFNALVRKEACADVARDLGLGEVMKLGRSEMMSGGRRKDALLGDAL 120 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E++IAA+YLD G + A V + W R RDAKT LQEWA A+ P Y Sbjct: 121 EAVIAAVYLDSGFDAARGLVLRLWGGRIGAVQSDARDAKTSLQEWAQARGLPPPAYIELG 180 Query: 180 RSGPDHDPRFTVVVEISG 197 R GPDH P+FTV V + Sbjct: 181 RDGPDHQPQFTVEVRLEN 198 >gi|195391256|ref|XP_002054279.1| GJ24359 [Drosophila virilis] gi|194152365|gb|EDW67799.1| GJ24359 [Drosophila virilis] Length = 2250 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 89/251 (35%), Gaps = 35/251 (13%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F++RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1994 FEEFESSLGYTFSDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2053 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99 G L+ ++LV+ + +A + R Sbjct: 2054 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQENGHIISE 2113 Query: 100 ------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 + + DV ES+ A++LD + + + + Sbjct: 2114 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVYSNMMKPEIEQFS 2173 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 K+ ++E K R V V++ +G+ + R A+ Sbjct: 2174 NSVPKSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKC 2230 Query: 214 VAAAEVLKREG 224 AA L++ Sbjct: 2231 TAAKCALRQLK 2241 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1717 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1774 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1775 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1815 >gi|163955118|ref|YP_001648222.1| hypothetical protein OsV5_145f [Ostreococcus virus OsV5] gi|163638567|gb|ABY27926.1| hypothetical protein OsV5_145f [Ostreococcus virus OsV5] Length = 241 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 6/221 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTL 58 +E+ +G + S ++A TH S Y++ S+E LEF+GD +LG +I+ Sbjct: 1 MNFNQQDIEQLVGTKIRDLSFYQRAFTHKSALKEYEQFNVSFETLEFMGDSVLGFIITKF 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF+ ++ +EG L+ LV +ET + +A +L L + + ++ + I DV Sbjct: 61 LFDRYEERQEGFLTKARTKLVRSETLAAIALKLGLNKLVLMDEKGTRNGWNNNPKILEDV 120 Query: 119 VESLIAALYLD-GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+L+ A+Y+D G + + Y + + D + + H + P + Sbjct: 121 FEALVGAIYMDLGLLHAKQFVLRIYNDPKYIDLNSIMVDDNFKDKLMRHCQVNNLPLPEY 180 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 S + + F V I+G +G SK+ AEQ+AA Sbjct: 181 EVVSHWEGN--FYVDALINGRFCGRGQAKSKKQAEQLAAKA 219 >gi|124516572|gb|EAY58080.1| ribonuclease III [Leptospirillum rubarum] Length = 377 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 73/251 (29%), Positives = 114/251 (45%), Gaps = 34/251 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFN 61 L + +G F +E+ALTH S SH +YERLEFLGDR++GL++S L N Sbjct: 19 EHLIRILGLPFKPTMRIEEALTHRSASHERGRKTPIPNYERLEFLGDRVIGLIVSEYLLN 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + SA EG++ F+ +VS +T + +AR +DL S++ + +S+ AD ES Sbjct: 79 TWPSASEGDIGQIFSGIVSTQTLASIARRMDLGSYMILGKGSHSSGDRENSSLLADTFES 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-------------------------- 155 L AA+YL+ G+E + ++ Q ++ + Sbjct: 139 LAAAIYLEYGLETCRQVLIPWFTQPLIEIVQKIENLREIRDSSSGPGSSVIATQPAPPRA 198 Query: 156 ---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K LQ+W +K P Y+V GP H RF + V + G + +KR A Sbjct: 199 GSLNYKLLLQKWCQSKAEELPVYQVLEEIGPAHQRRFRLGVFLKGKQLGEAEGTTKRGAS 258 Query: 213 QVAAAEVLKRE 223 AA +R Sbjct: 259 VHAAKNAWERI 269 >gi|297834980|ref|XP_002885372.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp. lyrata] gi|297331212|gb|EFH61631.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp. lyrata] Length = 391 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 29/244 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ LEK + Y F N+SLL++A+TH+S + SYERLEF+GD +GL IS L+ Sbjct: 57 MESM--EALEKILNYKFKNKSLLKEAITHTSCTD--FPSYERLEFVGDSAIGLAISNYLY 112 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111 + S + +LS+ + VS E ++V L F+R ++ + Sbjct: 113 LTYPSLEPHQLSLLRAANVSTEKLARVTLNHGLYQFLRRNAPSLDEKVKEFSDAVGKEDD 172 Query: 112 -----------TSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKT 159 + AD+ ES+ A+Y+D ++ + + + + ++ + Sbjct: 173 FSVAYGGLVKAPKVLADLFESVAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQP 232 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + ++ G + + A G +K A +AA E Sbjct: 233 VSMLFKLCHKHKKRIDIKNWKDGN----ISIADIYLDDEFLASGRAENKDIARLIAAKEA 288 Query: 220 LKRE 223 L++ Sbjct: 289 LRKL 292 >gi|309355088|emb|CAP39460.2| CBR-DCR-1 protein [Caenorhabditis briggsae AF16] Length = 2030 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 91/256 (35%), Gaps = 40/256 (15%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 +++ LE++IGY F +R+ L +A TH+S ++ Y+RLEFLGD +L +I+ LF Sbjct: 1761 QFAQLEEKIGYRFKDRAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDV 1820 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD------ 117 G L+ ++LV+ + +A + + + + D Sbjct: 1821 RQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCGDRSFDTN 1880 Query: 118 ------------------------------VVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 V ES+ A+YLD G + T+ Y + Sbjct: 1881 FNTEMYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVIYHLMKG 1940 Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 ++ ++E + + V V++ GM + Sbjct: 1941 TIETCCANPPRSPIRELMELEGTKARFS---KMERILESGKVRVTVDVGNNMRFTGMGRN 1997 Query: 208 KRAAEQVAAAEVLKRE 223 R A+ AA LK Sbjct: 1998 YRIAKATAAKRALKYL 2013 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 2/134 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALT S+ S S ER E +GD L + L++ EG+LS + V Sbjct: 1513 PCLLLTALTTSNASDGM--SLERFETIGDSFLKFATTDYLYHTLQEQHEGKLSWARSKEV 1570 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S ++ ++L + I + D + ++ + + E+ Sbjct: 1571 SNCNLYRLGKKLGIPQLIVANKFDAHDSWLPPCYVPTCDFKAPNTSDAEEKDKEMERILS 1630 Query: 140 DKYWKQRALKSGKF 153 + +++ + Sbjct: 1631 GQTIEEKPENKTGW 1644 >gi|268576156|ref|XP_002643058.1| C. briggsae CBR-DCR-1 protein [Caenorhabditis briggsae] Length = 1863 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 91/256 (35%), Gaps = 40/256 (15%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 +++ LE++IGY F +R+ L +A TH+S ++ Y+RLEFLGD +L +I+ LF Sbjct: 1596 QFAQLEEKIGYRFKDRAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDV 1655 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD------ 117 G L+ ++LV+ + +A + + + + D Sbjct: 1656 RQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCGDRSFDTN 1715 Query: 118 ------------------------------VVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 V ES+ A+YLD G + T+ Y + Sbjct: 1716 FNTEMYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVIYHLMKG 1775 Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 ++ ++E + + V V++ GM + Sbjct: 1776 TIETCCANPPRSPIRELMELEGTKARFS---KMERILESGKVRVTVDVGNNMRFTGMGRN 1832 Query: 208 KRAAEQVAAAEVLKRE 223 R A+ AA LK Sbjct: 1833 YRIAKATAAKRALKYL 1848 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 2/134 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALT S+ S S ER E +GD L + L++ EG+LS + V Sbjct: 1348 PCLLLTALTTSNASDGM--SLERFETIGDSFLKFATTDYLYHTLQEQHEGKLSWARSKEV 1405 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S ++ ++L + I + D + ++ + + E+ Sbjct: 1406 SNCNLYRLGKKLGIPQLIVANKFDAHDSWLPPCYVPTCDFKAPNTSDAEEKDKEMERILS 1465 Query: 140 DKYWKQRALKSGKF 153 + +++ + Sbjct: 1466 GQTIEEKPENKTGW 1479 >gi|7499923|pir||T21419 hypothetical protein F26E4.13 - Caenorhabditis elegans Length = 412 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 13/228 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+R+G F N LL KA T +I ++ + +RLE+LGD +L L++S L+ F Sbjct: 162 FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 221 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG +S+ SLVS +T + V +L F+ + + +AD+VE+ I Sbjct: 222 PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAPYKTPE---LKLKDKADLVEAFI 278 Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV------TPEY 175 ALY+D GIE F+ + R + DAK+ LQ+W A PEY Sbjct: 279 GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRDPSSSEPDMPEY 338 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V GP ++ F + V G A + + AE A L Sbjct: 339 RVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANL 386 Score = 42.6 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 49/122 (40%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ERLE+LGD ++ L++S L+ EG L+ +LV + +A+ + ++ Sbjct: 18 HNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQ 77 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158 S + A+ E+++AA+YLDGG+ K + Sbjct: 78 YSHGADLINVAEFKHALANAFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLKEKWDHIN 137 Query: 159 TE 160 Sbjct: 138 EH 139 >gi|321461347|gb|EFX72380.1| hypothetical protein DAPPUDRAFT_308316 [Daphnia pulex] Length = 1741 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 87/240 (36%), Gaps = 22/240 (9%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + E++I Y F +RS L +A +H+S + + Y+RLEFLGD +L LI+ L+ + Sbjct: 1490 FESFEEKICYKFNDRSYLLQAFSHASYYLNRLTDCYQRLEFLGDAVLDYLITRYLYENLP 1549 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ T + +A + + + S + Q + S+ Sbjct: 1550 RHPPGALTDLRSALVNNTTFAVLAERYEFHRYFKHLSPSLNQIMDKFIKAQEENGHSINE 1609 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR---- 180 Y+ +V V + + + + + Sbjct: 1610 EYYMIEAEDVEVPKVLGDVFESVAGAIYLDSHMSLNAVWRVYYNMMKKEIDEFSKNVPKS 1669 Query: 181 --------------SGPDH---DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G D R V V++ G +G+ + R A+ AA L+ Sbjct: 1670 PIRELLELETDRVKFGKAERLPDGRLRVTVDVIGKGTFKGIGRNYRIAKCTAAKYALRTL 1729 Score = 43.8 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +A T SS + + ERLE +GD L I+T L+ + S EGELS + V Sbjct: 1239 PSVILQAFTMSSANDGI--NLERLETIGDSFLKYAITTYLYCKYSSIHEGELSHLRSRQV 1296 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVC 108 S Q+ ++ + + + Sbjct: 1297 SNLHLYQLGKKKLFGGCMVATKFNPHENW 1325 >gi|258652105|ref|YP_003201261.1| ribonuclease III [Nakamurella multipartita DSM 44233] gi|258555330|gb|ACV78272.1| ribonuclease III [Nakamurella multipartita DSM 44233] Length = 249 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 57/198 (28%), Positives = 91/198 (45%), Gaps = 3/198 (1%) Query: 20 RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 L+ ALTH S ++ + + ERLEFLGD +LG++++ L+ +EG L+ S Sbjct: 23 PELVVLALTHRSFAYEHGGLPTNERLEFLGDSVLGVVVTETLYRTHPELQEGRLAKLRAS 82 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 +V+ + V R + L +R+ +SI AD VE++I A+YL G+EVA Sbjct: 83 VVNMHALAGVGRTIGLGDQLRLGKGEELTGGRDKSSIVADAVEAVIGAVYLQHGLEVARA 142 Query: 138 FVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 V + + + + + A+ G+ GPDH F V +S Sbjct: 143 VVLRLFADLLATAPQLGAGLDWKTSLQELAAERGLGVPEYRVSEEGPDHAKVFAARVLLS 202 Query: 197 GLAPAQGMDCSKRAAEQV 214 G A G +K+ AEQ Sbjct: 203 GSARGTGTGRTKKEAEQN 220 >gi|186681790|ref|YP_001864986.1| ribonuclease III [Nostoc punctiforme PCC 73102] gi|186464242|gb|ACC80043.1| ribonuclease III [Nostoc punctiforme PCC 73102] Length = 228 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 52/200 (26%), Positives = 78/200 (39%), Gaps = 9/200 (4%) Query: 17 FANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N LL ALTH S H E ERLEFLGD +L L L+ E EL+ Sbjct: 7 FHNEKLLRHALTHRSYVHENPGEGEHNERLEFLGDALLNFLSGEYLYKCHPEMGEDELTR 66 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 R ++LV + ++ A E+ L +R+ D ++ + E+++ A YLD Sbjct: 67 RRSALVDEKQLAKFAEEVGLDFRMRLGKGAILDGGYQNPNLLSSTFEAVLGAYYLDNDSN 126 Query: 134 VAGTFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDP 187 + + + + D+K QEW P T + G P H P Sbjct: 127 IEAVRAIIEPLFDSVDPKHIVVSRSNVDSKNRFQEWVQRNVTPNPPKYFTEQIGGPSHAP 186 Query: 188 RFTVVVEISGLAPAQGMDCS 207 F V + +G + Sbjct: 187 EFIAKVLVDEKIYGEGKGRN 206 >gi|81776564|sp|Q985A6|RNC_RHILO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|14027203|dbj|BAB54157.1| ribonuclease III [Mesorhizobium loti MAFF303099] Length = 221 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 99/200 (49%), Positives = 129/200 (64%), Gaps = 1/200 (0%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +R G+AFA+R L++ALTH+S + YER EFLGDR+LGL+++ +L F A E Sbjct: 1 MERTGHAFADRQRLQRALTHASARGANAGTDYERFEFLGDRVLGLVVADMLLAAFPDAAE 60 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS+R N+LV+AE S++A + L IR SD+R +++AD +ESLIA LYL Sbjct: 61 GELSLRLNALVNAEALSEIAEHIGLPDLIRAGSDVRGLEGRKRVNLRADALESLIAVLYL 120 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 DGG+E A F+ KYW+ R+ SG RRDAKTELQEWAH P Y++ R GPDHDP Sbjct: 121 DGGLEAARAFIHKYWQPRSQASGAARRDAKTELQEWAHQAASAVPAYQIDSREGPDHDPL 180 Query: 189 FTVVVEISGLAPAQGMDCSK 208 FTV V + PA G SK Sbjct: 181 FTVSVRVGAFQPATGSGRSK 200 >gi|195037032|ref|XP_001989969.1| GH18503 [Drosophila grimshawi] gi|193894165|gb|EDV93031.1| GH18503 [Drosophila grimshawi] Length = 2254 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 88/248 (35%), Gaps = 29/248 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1998 FEEFEASLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2057 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A + R S DV IQ + S+ Sbjct: 2058 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQENGHSISE 2117 Query: 125 ALYLDGGIEVAGTFVDKYWK---------------------QRALKSGKFRRDAKTELQE 163 YL E + K + + E Sbjct: 2118 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSDLSLDVVWRVYSNMMKPEIEQFS 2177 Query: 164 WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + K + T + G R V V++ +G+ + R A+ AA Sbjct: 2178 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAA 2237 Query: 217 AEVLKREG 224 L++ Sbjct: 2238 KCALRQLK 2245 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 2/110 (1%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + +G+ + S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+ Sbjct: 1712 ELVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYMTYENVHEGK 1769 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 LS + V+ ++ R L ++ + D +E Sbjct: 1770 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1819 >gi|329120775|ref|ZP_08249436.1| ribonuclease III [Neisseria bacilliformis ATCC BAA-1200] gi|327460145|gb|EGF06483.1| ribonuclease III [Neisseria bacilliformis ATCC BAA-1200] Length = 316 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 66/218 (30%), Positives = 106/218 (48%), Gaps = 7/218 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ IG+ FA+ +LL++ALTH S S + ER EF+GD IL ++ +LF+ + Sbjct: 86 RLQAAIGHTFADPALLDRALTHRSFSSRH---NERFEFVGDAILNYTVARMLFDAYPQLP 142 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG LS +LV+ ++ A L++ + + + K SI AD +E++ AA+ Sbjct: 143 EGRLSRLRANLVNQTVLAETAAALNIGDALLLGAGELKSGGFRRPSILADAMEAVFAAVS 202 Query: 128 LDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + + + K +DAKT LQE A+ P+Y++ + G Sbjct: 203 FDADFAAAEAVVRRLFAERVANIDCGEKEAKDAKTRLQEALQAQRFALPKYRIDKQEGEG 262 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221 FTV ++ L + +RAAEQ AA L+ Sbjct: 263 SGAWFTVSCDLGELGFVSTAQAAGRRAAEQEAAKTALE 300 >gi|126662618|ref|ZP_01733617.1| putative ribonuclease III [Flavobacteria bacterium BAL38] gi|126625997|gb|EAZ96686.1| putative ribonuclease III [Flavobacteria bacterium BAL38] Length = 260 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 6/222 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIST 57 + + + K +G+ +KA TH S + +YERLEFLGD +LG +I+ Sbjct: 30 DGIFFEKITKILGFEPKELRYYKKAFTHRSTNKVDEKGNPFNYERLEFLGDAMLGSVIAA 89 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+N S EG L+ + +VS E +++ R+ +L F+ + + + ++ Sbjct: 90 HLYNEVPSGDEGYLTKMRSKIVSREHLNELGRDFNLVHFVESKVNSNQFGENIHGNLFEA 149 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 + ++ + K + A GK ++ K + + Sbjct: 150 FIGAIYLDRGFTYCEMFIRNKIIKQYVDIAKLEGKVISYKSLIIEWCQKEKI--SFFFDF 207 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +G + F V + I A+ SK+ AE+ A+ Sbjct: 208 VEDNGIEGQKYFGVKLLIDQKIIARARATSKKKAEEKASQRA 249 >gi|322436776|ref|YP_004218988.1| ribonuclease III [Acidobacterium sp. MP5ACTX9] gi|321164503|gb|ADW70208.1| ribonuclease III [Acidobacterium sp. MP5ACTX9] Length = 268 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 117/233 (50%), Gaps = 26/233 (11%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE------------SYERLEFLGDRILGLLI 55 LE +G+ FA +LL ALTH S + + E+LEF+GD LGLL Sbjct: 18 DLETLLGHRFARPNLLTLALTHRSFVYDSGQTAPENDLADPARDNEQLEFVGDAALGLLA 77 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + L F +++EGEL+ S+VS + +V LDL ++R+ K+ ++ Sbjct: 78 AESLCRRFPASREGELTRLRASIVSRKHLGEVGTRLDLGRWLRLGHTAEKNDGRRNAALF 137 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-----------RRDAKTELQEW 164 A+ VE+LIAALYLDGG+EVA FV+ A+ + + D K+ LQE Sbjct: 138 ANAVEALIAALYLDGGLEVARRFVEDEIVSPAIPALEQSLGEGERFAGAVGDHKSALQEM 197 Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG---LAPAQGMDCSKRAAEQV 214 A+ PEY++ SGPDH F+V V I G A AQ +K+ A+Q Sbjct: 198 LQAEGLGRPEYRLIAESGPDHKRLFSVEVLIEGPDSEAIAQAEGPTKKQAQQE 250 >gi|293363981|ref|ZP_06610717.1| ribonuclease III [Mycoplasma alligatoris A21JP2] gi|292552471|gb|EFF41245.1| ribonuclease III [Mycoplasma alligatoris A21JP2] Length = 226 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 5/223 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 + K N+ + +AL H S ESYERLEFLGD +L L +S+ ++ Sbjct: 6 NFDEFFKYHEIEPKNKLIYFQALKHGSFVKKQSKLESYERLEFLGDSVLQLFVSSYIYTK 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F + ++G+++ +V+A + SQV+ ++ L + ++ T +Q+D+ ES+ Sbjct: 66 FPNMEQGKMTELRAKVVNANSLSQVSNKIGLINLLKTGGGQTAVSVKSSTKVQSDIFESI 125 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I A+++D G+ A F+ + K + + + Sbjct: 126 IGAIFVDLGLNHAYKFIRLHLSSTIDNLFKHENKDPKTRLQEYFQNISRENIKYIVDQL- 184 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + F+ + G SK+ +E AA E LK+ I Sbjct: 185 --PNKSFSAKATHDKIVYGIGKGSSKKESEINAALEALKKLNI 225 >gi|194910778|ref|XP_001982226.1| GG12488 [Drosophila erecta] gi|190656864|gb|EDV54096.1| GG12488 [Drosophila erecta] Length = 2249 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 86/248 (34%), Gaps = 29/248 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1993 FEVFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2052 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A F R S DV IQ + S+ Sbjct: 2053 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2112 Query: 125 ALYLDGGIEVAG---------------------TFVDKYWKQRALKSGKFRRDAKTELQE 163 YL E + E Sbjct: 2113 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2172 Query: 164 WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + K + T + G R V V++ +G+ + R A+ AA Sbjct: 2173 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAA 2232 Query: 217 AEVLKREG 224 L++ Sbjct: 2233 KCALRQLK 2240 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1723 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1780 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1781 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1821 >gi|224068194|ref|XP_002302679.1| dicer-like protein [Populus trichocarpa] gi|222844405|gb|EEE81952.1| dicer-like protein [Populus trichocarpa] Length = 1817 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 84/236 (35%), Gaps = 18/236 (7%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ + TLE + F +R LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1520 SVDFDTLEGALDIKFNDRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFT 1579 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------ 110 + + G L+ + V+ E ++VA + L +R S + Sbjct: 1580 YTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALEKQIRDFVREVQDELLKP 1639 Query: 111 -MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 S ++ + I A K + + Sbjct: 1640 VFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHPV 1699 Query: 170 GVTPEYKVTFRSGPDHDPRF-----TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E G ++ TV V I G+ + K+ A+++AA L Sbjct: 1700 RELQERCQQQAEGLEYKATRSGNLATVEVFIDGVQVGVAQNPQKKMAQKLAARNAL 1755 Score = 52.6 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 1305 ELKDIINYPVPASKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1361 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1362 EGQLTRMRQQMVSNMVLYQYALNKGLQSYIQ 1392 >gi|4378851|gb|AAD19719.1| ribonuclease III [Zymomonas mobilis subsp. mobilis ZM4] Length = 222 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 73/191 (38%), Positives = 111/191 (58%), Gaps = 3/191 (1%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 + +L +A+TH S + Y+RLEFLGDR+LGL+I+ L++ F EG+LS R NS Sbjct: 18 KDPALFLRAMTHPSHGN---SDYQRLEFLGDRVLGLVIANWLYDLFPREPEGKLSRRLNS 74 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 LVS +C+ +AR + L ++R+ R D + ++ DV+E++I A++L+ GIE AG Sbjct: 75 LVSGASCASIARIVGLPQWLRLGKQARDDGAAASDNVLGDVMEAMIGAIFLESGIEAAGK 134 Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + KYW + K+ LQEWA A P Y++ R+GP H+P FT+ V I+G Sbjct: 135 LIHKYWAPLVTGQESAPKHPKSALQEWAAAHNRRPPVYEIVSRTGPQHNPCFTIQVSIAG 194 Query: 198 LAPAQGMDCSK 208 + A SK Sbjct: 195 VGEASAEGSSK 205 >gi|86134672|ref|ZP_01053254.1| ribonuclease III [Polaribacter sp. MED152] gi|85821535|gb|EAQ42682.1| ribonuclease III [Polaribacter sp. MED152] Length = 245 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 6/218 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 Y L+ + ++ S +KA TH S+ S +YERLEFLGD ILG +I++ L+ Sbjct: 19 YFELKTLLNFSPKKISKYKKAFTHRSVQMTDSKGNPINYERLEFLGDSILGSVIASYLYK 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + +VS E +++ ++L+L F++ + D + +I +V + Sbjct: 79 KVPTGSEGYLTQMRSKIVSREHLNELGKDLELIRFVKSNIDQNTVGDNIHGNIFEALVGA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + + + V + GK ++ K +++ S Sbjct: 139 IYLDRGYNYAQKFIYENVILPYVNIERLEGKITSYKGLIIEWCQKQK--KKYKFETYEDS 196 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 G + F+V V I G A+G SK+ AE+ A+ V Sbjct: 197 GNEAIKHFSVKVSIDGEQVAKGRATSKKKAEEQASKRV 234 >gi|198275414|ref|ZP_03207945.1| hypothetical protein BACPLE_01577 [Bacteroides plebeius DSM 17135] gi|198271750|gb|EDY96020.1| hypothetical protein BACPLE_01577 [Bacteroides plebeius DSM 17135] Length = 339 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 4/226 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTL 58 Y K +G+ N + ++AL H S S + ERLEFLGD IL +++ + Sbjct: 16 DKESYLCFYKILGFYPRNIEIYQQALLHKSSSVKAKGRLLNNERLEFLGDAILDAVVADI 75 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 ++ F+ +EG L+ + +V ET +Q+A ++ L I+ ++ + + Sbjct: 76 VYKRFEGKREGFLTNTRSKIVQRETLNQIAVKIGLDKLIKYTTRQSSHNSYMCGNAFEAL 135 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 V ++ + K + + K++L EW + + Sbjct: 136 VGAIYLDRGYA-TCKFFMEERIIKPYLNLEKLSRKEVNFKSKLIEWGQKNKFLIEFNLLE 194 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +P F V + + QG SK+ ++Q AA E L + Sbjct: 195 QTVDEQQNPVFETQVVVEQIPAGQGKGYSKKESQQEAAHETLNKIK 240 >gi|305665924|ref|YP_003862211.1| putative ribonuclease III [Maribacter sp. HTCC2170] gi|88710699|gb|EAR02931.1| putative ribonuclease III [Maribacter sp. HTCC2170] Length = 245 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 6/215 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + K +G+ N + +KA H S + +YERLEFLGD +LG +IS L+N Sbjct: 22 ITKILGFKPKNLKIFKKAFLHRSANRKDEDGNPMNYERLEFLGDAMLGTIISKHLYNEVP 81 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +VS E +++ ++L+L F+ + ++ +V ++ Sbjct: 82 DGDEGYLTKMRSKIVSREHLNELGKDLNLIKFVESRIPKTHFGDNIHGNVFEALVGAIYL 141 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + V + GK ++ + +Y V +G D Sbjct: 142 DRGYNYCEKFIHERVILPYVDIEQLEGKVISYKSLVIEWCQK--QKKSFKYNVYEDTGKD 199 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 F V + I A+ SK+ AE+ A+ Sbjct: 200 VLKHFAVKLSIGDNVVAKARATSKKKAEERASKRA 234 >gi|150024312|ref|YP_001295138.1| ribonuclease III [Flavobacterium psychrophilum JIP02/86] gi|149770853|emb|CAL42318.1| Ribonuclease III [Flavobacterium psychrophilum JIP02/86] Length = 246 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 6/217 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFN 61 +S LEK +G+ N + +A TH S++ +YERLEF+GD +LG +I+ LFN Sbjct: 20 FSKLEKILGFKPLNLTHFRRAFTHRSMNKLDEKGNPMNYERLEFMGDAMLGSVIAAHLFN 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + +VS E +++ ++L+L F+ L+ + ++ V + Sbjct: 80 MSPTGDEGYLTKMRSKIVSREHLNELGKDLNLIQFLESKVTLQNFGENIHGNLFEAFVGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + + V K + GK ++ K + + Sbjct: 140 IYLDRGFVYCEKFIHKKVIKPYVDIDKLEGKVISYKSLLIEWCQKEKRVFHYDIYEDEDA 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 G F V + I G A+ SK+ AE++A+ Sbjct: 200 GK--LKYFGVKLSIDGKVVAKARATSKKKAEEIASKR 234 >gi|226528435|ref|NP_001141713.1| hypothetical protein LOC100273842 [Zea mays] gi|194705648|gb|ACF86908.1| unknown [Zea mays] Length = 329 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 90/239 (37%), Gaps = 15/239 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58 MSA + +E +GY F ++SL+E ALTH S + ++YERLE+LGD +L L+S Sbjct: 43 MSAKDVTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSRE 102 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 +F + + + G L+ + V E ++VA L F+R + +D F Sbjct: 103 VFRTYRTLQPGPLTRLRAANVDTEKLARVAVHRGLHRFLRHKAPKLQDQICFFIEEMRKY 162 Query: 119 VESLIA-------ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 + + A + ++ + + D L+ Sbjct: 163 PVHSNGLLDPPKVLCDIVESLIGAIYLDSNFDQEEVWRVFRTLADPLIGLETLGKHPVSE 222 Query: 172 TPEYKVTFRSG-----PDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKREG 224 E+ G + D V V I G + K A+ AA + L + Sbjct: 223 LFEFCQKTHRGVKFLKDEWDKSLKVQVLIDGEVVGSAIYGPKKEIAQNRAAKDALDKLK 281 >gi|300727555|ref|ZP_07060946.1| ribonuclease III [Prevotella bryantii B14] gi|299775258|gb|EFI71859.1| ribonuclease III [Prevotella bryantii B14] Length = 360 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 5/221 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62 S+L +G+ + L ++AL H SI H + + ERLEFLGD IL ++ +++ H Sbjct: 21 SSLYDILGFYPHDIKLYKQALMHKSIMHRNSKGKPVNNERLEFLGDAILDAIVGDIVYQH 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F +EG L+ + LV +T +++A+E+ + I + + +V ++ Sbjct: 81 FPGKREGFLTNTRSKLVQRDTLNKLAQEMGITQLILSNGHSSSHNSYVGGNAFEALVGAV 140 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + + + + K K++L EW+ Sbjct: 141 YLDRGYNACMNFMQNRILAKMINIDKVAYKEVNF-KSKLIEWSQKNRVKLSFEMTGQDKD 199 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + P F+ V I + A+G SK+ ++Q+A+ L + Sbjct: 200 KNGSPIFSYKVVIENIDGAEGKGYSKKESQQIASKGTLDKL 240 >gi|206603444|gb|EDZ39924.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG'] Length = 375 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 73/251 (29%), Positives = 114/251 (45%), Gaps = 34/251 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFN 61 L + +G F +E+ALTH S SH +YERLEFLGDR++GL++S L N Sbjct: 19 EHLIRILGLPFKPTMRIEEALTHRSASHERGRKTPIPNYERLEFLGDRVIGLIVSEYLLN 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + SA EG++ F+ +VS +T + +AR +DL S++ + +S+ AD ES Sbjct: 79 TWPSASEGDIGQIFSGIVSTQTLASIARRMDLGSYMILGKGSHSSGDRENSSLLADTFES 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-------------------------- 155 L AA+YL+ G+E + ++ Q ++ + Sbjct: 139 LAAAIYLEYGLETCRQVLIPWFTQPLIEIVQKIENLREVRDSSSGPVSSVIAAQPAPPRA 198 Query: 156 ---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K LQ+W +K P Y+V GP H RF + V + G + +KR A Sbjct: 199 GSLNFKLLLQKWCQSKAEELPVYQVLEEIGPAHQRRFRLGVFLKGKQLGEAEGTTKRGAS 258 Query: 213 QVAAAEVLKRE 223 AA +R Sbjct: 259 VHAAKNAWERI 269 >gi|282896739|ref|ZP_06304747.1| Ribonuclease III [Raphidiopsis brookii D9] gi|281198457|gb|EFA73345.1| Ribonuclease III [Raphidiopsis brookii D9] Length = 276 Score = 105 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 8/199 (4%) Query: 17 FANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F + LL +ALTH S ++ + ERLEFLGD IL + L++ + E EL+ Sbjct: 56 FEDEKLLRQALTHRSYANENPSEGDHNERLEFLGDAILNFISGEYLYSRYPQKGEDELTR 115 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 R ++LV + ++ A E+ L +R+ +D ++ + E++I A YLD Sbjct: 116 RRSALVEEKQLAKFALEVGLNVKMRLGKGTIQDGGYQNPNLLSSTFEAIIGAYYLDNNCN 175 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS-----GPDHDPR 188 + + + + + G H P Sbjct: 176 IEAVKLAVEPLFDFVSQHTIESRYNVDSKNRFQEWVQKKLCANPPKYKTQQIGGSPHLPE 235 Query: 189 FTVVVEISGLAPAQGMDCS 207 F V + G QG + Sbjct: 236 FFSRVLVDGKEFGQGNGKN 254 >gi|282901362|ref|ZP_06309287.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505] gi|281193641|gb|EFA68613.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505] Length = 228 Score = 105 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 75/199 (37%), Gaps = 8/199 (4%) Query: 17 FANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F N L+ +ALTH S ++ + ERLEFLGD IL + L++ + E EL+ Sbjct: 7 FKNEKLVRQALTHRSYANENPTEGDHNERLEFLGDAILNFISGEYLYSRYPQKGEDELTR 66 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 R ++LV + ++ A E+ L +R+ +D ++ + E++I A YLD Sbjct: 67 RRSALVEEKQLAKFALEVGLNLKMRLGKGTIQDGGYQNPNLLSSTFEAVIGAYYLDNNCN 126 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS-----GPDHDPR 188 + V + + + G H P Sbjct: 127 IEAVKVAVEPLFDFVSQHTIESRYNVDSKNRFQEWVQKKLCANPPKYKTQQIGGSPHLPE 186 Query: 189 FTVVVEISGLAPAQGMDCS 207 F V + G QG + Sbjct: 187 FASRVLVDGKEFGQGKGKN 205 >gi|312131056|ref|YP_003998396.1| rnase iii [Leadbetterella byssophila DSM 17132] gi|311907602|gb|ADQ18043.1| RNAse III [Leadbetterella byssophila DSM 17132] Length = 242 Score = 105 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 83/223 (37%), Gaps = 7/223 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTLLFNH 62 +E +G +N L + A H+S S ++ES ERLEFLGD +LGL++ LF Sbjct: 19 AIELIVGAKPSNPLLYQLAFRHTSASKESMFKGFRESNERLEFLGDAVLGLIVGEYLFKK 78 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + EG L+ + +V+ E+ + V R L L + I S + ++ ++ Sbjct: 79 YPFKNEGFLTEIRSRIVNRESLNNVGRRLGLENLIESDGARNFQRTSLLGDAMEALIGAI 138 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + + + + L E+ + G Sbjct: 139 YLDKGYKFTQKFVVSKLLSNHFDLDEVISNNTNYKSSILSWAQSEG--KKVEFVIVEEKG 196 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +H F V + G + G +K+ AEQ A+ I Sbjct: 197 KNHSREFVAQVLVDGEIISNGNGWNKKKAEQDASRRACGILKI 239 >gi|262068132|ref|ZP_06027744.1| ribonuclease III [Fusobacterium periodonticum ATCC 33693] gi|291378220|gb|EFE85738.1| ribonuclease III [Fusobacterium periodonticum ATCC 33693] Length = 234 Score = 105 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 8/202 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M LE ++ Y F NR+LL+ AL H S+ + +E + ERLE LGD +L L+++ Sbjct: 1 MK--NLLDLEHKLNYYFNNRNLLKTALLHKSLGNEKKEYKNQNNERLELLGDAVLDLIVA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ ++ SA EG ++ +VS ++++R++ L F+ +S SI A Sbjct: 59 EYLYRNYKSASEGTIAKLKAMIVSEPILAKISRQIGLGKFLMLSKGEILSGGRNRESILA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 D E+++ A+Y+D +E A +F ++ + D K+ LQE+ F P Sbjct: 119 DAFEAVLGAVYMDSNLEDARSFALGHIEQYITHIEEDEDILDFKSILQEYVQKNFRTVPI 178 Query: 175 YKVTFRSGPDHDPRFTVVVEIS 196 Y++ GPDH F + V + Sbjct: 179 YELISEKGPDHMKEFEIQVVVG 200 >gi|332529447|ref|ZP_08405406.1| ribonuclease III [Hylemonella gracilis ATCC 19624] gi|332041093|gb|EGI77460.1| ribonuclease III [Hylemonella gracilis ATCC 19624] Length = 223 Score = 105 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 115/220 (52%), Gaps = 6/220 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ + F + +LL++ALTH S + ERLEFLGD +L L ++ LL+ + Sbjct: 2 RLQDHLQRPFTDAALLQRALTHRSF---CADHNERLEFLGDSVLNLAVADLLYQRLHALP 58 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS +LV ET Q+A EL L+ +R+ + + SI AD +E+LI A+Y Sbjct: 59 EGDLSRIRANLVKQETLHQLAMELGLSDLLRLGEGELRSGGNKRPSILADALEALIGAVY 118 Query: 128 LDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LD G A V ++ + + +D KTELQEW A+ P+Y+V +G H Sbjct: 119 LDAGYAAAQALVHHLYEKVEVTPQMQASAKDPKTELQEWLQARKLKLPQYRVVATTGAAH 178 Query: 186 DPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREG 224 F V E+S + G+ S+RA EQ AAA +L+ Sbjct: 179 RQTFDVECEVSEFQLTERGIGGSRRAGEQAAAAAMLQTLK 218 >gi|294782048|ref|ZP_06747374.1| ribonuclease III [Fusobacterium sp. 1_1_41FAA] gi|294480689|gb|EFG28464.1| ribonuclease III [Fusobacterium sp. 1_1_41FAA] Length = 234 Score = 105 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 60/202 (29%), Positives = 102/202 (50%), Gaps = 8/202 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M LE ++ Y F NR+LL+ AL H S+ + +E + ERLE LGD +L L+++ Sbjct: 1 MK--NLLDLEHKLNYYFNNRNLLKTALLHKSLGNEKKEYKNQNNERLELLGDAVLDLIVA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ ++ SA EG ++ +VS ++++R++ L F+ +S SI A Sbjct: 59 EYLYRNYKSASEGTIAKLKAMIVSEPILAKISRQIGLGKFLMLSKGEILSGGRNRESILA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+++ A+Y+D +E A +F + +Q + D K+ LQE+ F P Sbjct: 119 DAFEAVLGAVYMDSNLEDARSFALNHIEQYITHIEEDEDILDFKSILQEYVQKNFKTVPT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEIS 196 Y++ GPDH F + V + Sbjct: 179 YELISEKGPDHMKEFEIQVVVG 200 >gi|125555283|gb|EAZ00889.1| hypothetical protein OsI_22916 [Oryza sativa Indica Group] Length = 276 Score = 105 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 15/239 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58 M + +E +GY F +++L+E+ALTH S + Y+ +YERLE+LGD +L ++S Sbjct: 34 MGPGEVAAVESLLGYEFRDKALVEQALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSRE 93 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQ 115 +F + + G L+ + V E ++VA L F+R + + S+ Sbjct: 94 VFLTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMY 153 Query: 116 ADVVESLI----AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 L+ + + A + ++ + + D L+ Sbjct: 154 PIHSNGLLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGKHPVSE 213 Query: 172 TPEYKVTFRSG-----PDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVLKREG 224 E+ R G + D TV V I G + K+ A+ AA L + Sbjct: 214 LFEFCQKTRRGVKIVKDEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAKAALDKLK 272 >gi|218440872|ref|YP_002379201.1| ribonuclease III [Cyanothece sp. PCC 7424] gi|218173600|gb|ACK72333.1| Ribonuclease III [Cyanothece sp. PCC 7424] Length = 228 Score = 105 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 100/221 (45%), Gaps = 12/221 (5%) Query: 18 ANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 N+ L ALTH S + + +E ERLEFLGD +L + L+ + E +LS Sbjct: 8 KNQQLWLCALTHRSYVNEHLEIKEHNERLEFLGDAVLAFVAGEFLYQRYPHLSEAQLSRL 67 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 LV ++ A +L + +R+ KD ++ +D E++I A +LD GI+ Sbjct: 68 RARLVDETQLAKFAVQLGIGQLMRLGKGAIKDGGRENPALLSDTFEAIIGAYFLDAGIDA 127 Query: 135 AGTFVDKYWKQRALKSGKFRR---------DAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 FV ++ A + D K Q+W A F PEY + SGPDH Sbjct: 128 VREFVRPLFQSVADILMVAQSEILTSEKLLDPKNRFQQWTLANFTQNPEYVIIEESGPDH 187 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 FT V++ G+ G K+ A + AA LK+ G++ Sbjct: 188 AKEFTAQVKVQGIVYGIGRGRRKQEATKTAAEAALKKIGLF 228 >gi|34764313|ref|ZP_00145147.1| Ribonuclease III [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741211|ref|ZP_04571692.1| ribonuclease III [Fusobacterium sp. 4_1_13] gi|27885913|gb|EAA23255.1| Ribonuclease III [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229430743|gb|EEO40955.1| ribonuclease III [Fusobacterium sp. 4_1_13] Length = 234 Score = 105 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 57/203 (28%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ Sbjct: 1 MK--NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ ++ +A EG ++ +VS ++++R++ + F+ +S SI A Sbjct: 59 EYLYKNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+++ A+Y+D ++ A F + KQ + D K+ LQE+ +F P Sbjct: 119 DSFEAILGAVYMDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISG 197 Y++ GPDH F + V + Sbjct: 179 YELIAERGPDHMKEFEIQVIVGN 201 >gi|238759682|ref|ZP_04620842.1| Ribonuclease 3 [Yersinia aldovae ATCC 35236] gi|238702110|gb|EEP94667.1| Ribonuclease 3 [Yersinia aldovae ATCC 35236] Length = 226 Score = 105 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIHTIERLILAWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVVGTGSSRRK 210 >gi|193202651|ref|NP_001122460.1| Ortholog of Drosophila DRoSHa gene family member (drsh-1) [Caenorhabditis elegans] gi|159572246|emb|CAP19331.1| C. elegans protein F26E4.10b, confirmed by transcript evidence [Caenorhabditis elegans] Length = 1083 Score = 105 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 13/228 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+R+G F N LL KA T +I ++ + +RLE+LGD +L L++S L+ F Sbjct: 833 FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 892 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG +S+ SLVS +T + V +L F+ + + +AD+VE+ I Sbjct: 893 PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAPYKTPE---LKLKDKADLVEAFI 949 Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV------TPEY 175 ALY+D GIE F+ + R + DAK+ LQ+W A PEY Sbjct: 950 GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRDPSSSEPDMPEY 1009 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V GP ++ F + V G A + + AE A L Sbjct: 1010 RVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANL 1057 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 65/207 (31%), Gaps = 49/207 (23%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------------------------ 38 E+ I Y F +R ++E AL HSS Y Sbjct: 604 NFSLDVFEEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRRKYGAEDKR 663 Query: 39 -------------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 ERLE+LGD ++ L++S L+ EG L+ Sbjct: 664 EKKRVAGIMSLFNIMKGTSGGEPILHNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLAT 723 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 +LV + +A+ + ++ S + A+ E+++AA+YLDGG+ Sbjct: 724 YRTALVQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALANAFEAVMAAIYLDGGLA 783 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTE 160 K + Sbjct: 784 PCDVIFSKAMYGHQPVLKEKWDHINEH 810 >gi|240275432|gb|EER38946.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H143] Length = 495 Score = 105 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 84/251 (33%), Gaps = 34/251 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + R+GY F LL A TH+S ++ Y+RLEFLGD +L ++ L++H+ Sbjct: 151 KQIGNRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYP 210 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102 L+ ++VS + V +L L + S+ Sbjct: 211 DRDPQWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESAD 270 Query: 103 --LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 S D++E+ I A+++D + DA Sbjct: 271 SPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQYFEDMSVYDAFAN 330 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDH--------DPRFTVVVEISGLAPAQGMDCSKRAAE 212 + +T ++ +PR V + AQG+ S R A+ Sbjct: 331 KHPTTYFHNRLTIDFGCANYCLKAGEVQMVDSTEPRIYAAVIVHDKFVAQGIASSVRYAK 390 Query: 213 QVAAAEVLKRE 223 A+ L + Sbjct: 391 TKASEAALAKL 401 >gi|170591572|ref|XP_001900544.1| Type III restriction enzyme, res subunit family protein [Brugia malayi] gi|158592156|gb|EDP30758.1| Type III restriction enzyme, res subunit family protein [Brugia malayi] Length = 1856 Score = 105 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 81/257 (31%), Gaps = 41/257 (15%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++S LE IGY F +R+ L +A TH+S + Y+RLEFLGD +L +I+ LF H Sbjct: 1589 QFSKLEDCIGYRFHDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQHS 1648 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 G L+ ++LV+ + +A + + + E + Sbjct: 1649 AHYSPGVLTDLRSALVNNTIFASLAVKYNFHKHFIAMCPRLH---HMIEKFVCLCAEKNL 1705 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK-------------------------FRRDAK 158 ++ + + + T + + +R Sbjct: 1706 SSANFNEEMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLNTVWRVFYN 1765 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRF------------TVVVEISGLAPAQGMDC 206 + RF V V+I G GM Sbjct: 1766 LMKETINECCSNPPRSPIRELLEMEPERARFSKLERILETGKVRVTVDIQGKCRFTGMGR 1825 Query: 207 SKRAAEQVAAAEVLKRE 223 S R A+ AA L+ Sbjct: 1826 SYRIAKCTAAKRALRYL 1842 Score = 39.9 bits (91), Expect = 0.25, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +ALT S+ S + ERLE +GD L ++ LF+ EG+LS + VS Sbjct: 1340 LLQALTLSNASDGI--NLERLETVGDSFLKYAVTDYLFHTNPEQHEGKLSFARSKEVSNC 1397 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ R+ +L S I S D ++ Sbjct: 1398 NLYRLGRKHNLPSLIIGSKFDPNDGWLPPCYAPTSDFKA 1436 >gi|312069719|ref|XP_003137813.1| hypothetical protein LOAG_02227 [Loa loa] gi|307767024|gb|EFO26258.1| hypothetical protein LOAG_02227 [Loa loa] Length = 1928 Score = 105 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 89/257 (34%), Gaps = 41/257 (15%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++S LE IGY F +R+ L +A TH+S + Y+RLEFLGD +L +I+ LF H Sbjct: 1661 QFSKLEDFIGYRFNDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQHS 1720 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------ 111 G L+ ++LV+ + +A + + + Sbjct: 1721 SHYSPGVLTDLRSALVNNTIFASLAIKHNFHKHFIAMCPRLHHMIEKFVCLCTEKNLSSA 1780 Query: 112 -------------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146 D+ ES+ A+YLD G + + Y + Sbjct: 1781 NFNEEMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLDIVWRVFYNLMK 1840 Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 ++ ++E + + + V V+I G GM Sbjct: 1841 ETIDECCSNPPRSPIRELLE---MEPERARFSKLERILETGKVRVTVDIQGKCRFTGMGR 1897 Query: 207 SKRAAEQVAAAEVLKRE 223 S R A+ AA L+ Sbjct: 1898 SYRIAKCTAAKRALRYL 1914 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 8/112 (7%) Query: 16 AFAN------RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 F + L +ALT S+ S + ERLE +GD L ++ LF+ EG Sbjct: 1399 TFNDHPDGVSPCTLLQALTLSNASDGI--NLERLETVGDSFLKYAVTDYLFHTNPEQHEG 1456 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +LS + VS ++ R+ +L S I S D ++ Sbjct: 1457 KLSFARSKEVSNCNLYRLGRKHNLPSLIIGSKFDPNDGWLPPCYAPTSDFKA 1508 >gi|237740802|ref|ZP_04571283.1| ribonuclease III [Fusobacterium sp. 2_1_31] gi|229422819|gb|EEO37866.1| ribonuclease III [Fusobacterium sp. 2_1_31] Length = 234 Score = 105 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M LE ++ Y F NR+LL+ AL H S+ + +E + ERLE LGD +L L+++ Sbjct: 1 MK--NLLDLEHKLNYYFNNRNLLKTALLHKSLGNEKKEYKNQNNERLELLGDAVLDLIVA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ ++ SA EG ++ +VS ++++R++DL F+ +S SI A Sbjct: 59 EYLYRNYKSASEGTIAKLKAMIVSEPILAKISRQIDLGKFLMLSKGEILSGGRNRESILA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 D E+++ A+Y+D +E A +F ++ + D K+ LQE+ F P Sbjct: 119 DAFEAVLGAVYMDSNLEEARSFALGHIEQYITHIEEDEDILDFKSILQEYVQKNFKTVPT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISG 197 Y++ GPDH F + V + Sbjct: 179 YELISEKGPDHMKEFEIQVVVGN 201 >gi|298492780|ref|YP_003722957.1| ribonuclease III ['Nostoc azollae' 0708] gi|298234698|gb|ADI65834.1| ribonuclease III ['Nostoc azollae' 0708] Length = 227 Score = 105 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 76/198 (38%), Gaps = 8/198 (4%) Query: 16 AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F LL +ALTH S + E ERLEFLGD IL + L+ + E EL+ Sbjct: 6 TFNREKLLCQALTHRSYVNENPGEGEHNERLEFLGDAILNFISGQYLYRRYPQKGEDELT 65 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 R ++LV + ++ A E+ L +R+ +D ++ + E++I A YLD Sbjct: 66 RRRSALVEEKQLAKFAIEVGLDFRMRLGKGAIRDGGFQNPNLLSSTFEAVIGAYYLDNNC 125 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV-----TPEYKVTFRSGPDHDP 187 EV ++ + + + P+Y GP H P Sbjct: 126 EVEPIRTIIEPLFDSVSEDIIEPRSNVDSKNRFQEWVQKEIGANPPKYVTEQIGGPSHAP 185 Query: 188 RFTVVVEISGLAPAQGMD 205 F V + G + Sbjct: 186 EFIARVLVDGKEYGEAKG 203 >gi|317504409|ref|ZP_07962390.1| ribonuclease III [Prevotella salivae DSM 15606] gi|315664455|gb|EFV04141.1| ribonuclease III [Prevotella salivae DSM 15606] Length = 364 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 YS+L +G+ + S + AL H SI + + ERLEFLGD IL ++ +++ Sbjct: 20 YSSLYTILGFYPRDISYYKLALMHKSIMKRNAKGKPVNNERLEFLGDAILDAIVGHIVYQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV ET +++A EL + I + + +V + Sbjct: 80 HFPGKREGFLTNTRSKLVQRETLNKLANELGINQLILSNGRSSSHNSYMGGNAFEALVGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + D + + + K K++L EW+ + Sbjct: 140 VYLDRGYDACMNFMKNRILAQMINIDKVAYKEVNF-KSKLIEWSQKNRVRLTFDILEQSK 198 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + P F V I G+ G+ SK+ ++Q+A+ L+R Sbjct: 199 DNNGSPVFNYKVVIEGIDGCNGVGYSKKESQQLASKLTLERL 240 >gi|297539125|ref|YP_003674894.1| ribonuclease III [Methylotenera sp. 301] gi|297258472|gb|ADI30317.1| ribonuclease III [Methylotenera sp. 301] Length = 231 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 101/207 (48%), Gaps = 6/207 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L KR+ Y F +++LL +ALTH S + ++ ERLE+LGD L +I+ L+ F S Sbjct: 4 QDLSKRLSYKFVDKNLLTQALTHRSYA---SQNNERLEYLGDGALNFIIANQLYQRFPSL 60 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS LV T S++A LD+ +++ K SI AD +E++I A+ Sbjct: 61 AEGDLSRLRAQLVKEATISEIAFSLDIGDALKLGEGELKSAGWRRPSILADALEAIIGAV 120 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 YLDGG A V + + ++ + +D K+ LQE K PEY V SG Sbjct: 121 YLDGGFFAAEALVLELYIEKLSTIDPKIIDKDPKSLLQEMLQGKKIAVPEYAVVHTSGEA 180 Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRA 210 H F V I L G S+R Sbjct: 181 HAQIFIVECFIQKLDIRTVGEGTSRRI 207 >gi|256846347|ref|ZP_05551804.1| ribonuclease III [Fusobacterium sp. 3_1_36A2] gi|256718116|gb|EEU31672.1| ribonuclease III [Fusobacterium sp. 3_1_36A2] Length = 234 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 57/203 (28%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ Sbjct: 1 MK--NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ ++ +A EG ++ +VS ++++R++ + F+ +S SI A Sbjct: 59 EYLYKNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174 D E+++ A+Y+D ++ A F + KQ + D K+ LQE+ +F P Sbjct: 119 DSFEAILGAVYMDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISG 197 Y++ GPDH F + V + Sbjct: 179 YELIAERGPDHMKEFEIQVIVGN 201 >gi|317150438|ref|XP_001824024.2| dicer-like protein 1 [Aspergillus oryzae RIB40] gi|158706453|sp|Q2U6C4|DCL1_ASPOR RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent helicase dcl1 Length = 1523 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 88/254 (34%), Gaps = 37/254 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65 +E+++GY F LL A TH S ++ + Y+RLEFLGD +L ++ LF + Sbjct: 1243 KVEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPD 1302 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---------------------- 103 L+ ++VS + +A +L L + +R S+ Sbjct: 1303 KDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENESQGA 1362 Query: 104 --RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 V D+VE+ + A ++D + ++ D Sbjct: 1363 VDYWLVTKDPPKCLPDMVEAYLGAAFVDSDFQFRVVEDFFQRHVKSYFHDMTIYDTFANK 1422 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFT--------VVVEISGLAPAQGMDCSKRAAEQ 213 + +T EY T + V + + A+G S R A+ Sbjct: 1423 HPTTFLQNRLTNEYGCTNYCLKAGEIPVVDGGTVSVLAAVIVHEVVIAEGTASSGRYAKV 1482 Query: 214 VAAAEV---LKREG 224 A+ + L+ G Sbjct: 1483 KASEKALSVLENMG 1496 Score = 44.9 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 38/138 (27%), Gaps = 24/138 (17%) Query: 6 YSTLE--KRIGYAFANRSLLEKALT--------HS----SISHSYQESYERLEFLGDRIL 51 LE K + + +A T H + ++YERLEFLGD L Sbjct: 1030 LIALEGCKTLDLSVK-PEYALEAFTKDSDNTEEHRVQQIHVQRGMGKNYERLEFLGDCFL 1088 Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAET---------CSQVARELDLASFIRVSSD 102 + S LF E + V L+ + Q R + Sbjct: 1089 KMATSISLFVQNPDDDEFDFHVNRMCLICNKNLFNTALKKELYQYTRSRGFSRHTWYPDG 1148 Query: 103 LRKDVCSFMTSIQADVVE 120 L + + Sbjct: 1149 LTLLHGRDHRKKISAESK 1166 >gi|91775216|ref|YP_544972.1| ribonuclease III [Methylobacillus flagellatus KT] gi|91775360|ref|YP_545116.1| ribonuclease III [Methylobacillus flagellatus KT] gi|91709203|gb|ABE49131.1| RNAse III [Methylobacillus flagellatus KT] gi|91709347|gb|ABE49275.1| RNAse III [Methylobacillus flagellatus KT] Length = 248 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 102/206 (49%), Gaps = 6/206 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 ++L +++ Y F ++ LL ALTH S S + ERLEFLGD +L L++ LF F Sbjct: 26 NSLVRQLAYEFKDKGLLTLALTHRSYS---GSNNERLEFLGDGVLNFLVAHQLFLRFPKL 82 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS LV +T S++A EL + F+R+ K S+ AD +E++I A+ Sbjct: 83 PEGDLSRLRAQLVKEQTLSEIATELSVGEFLRLGEGELKSGGWRRPSVLADAMEAIIGAV 142 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LDGG A V + + R +DAK+ LQE+ + PEY V G Sbjct: 143 FLDGGYPAAEALVKRLFLPRMEGIDPKAIGKDAKSLLQEFLQGRKIDLPEYNVLATEGEA 202 Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKR 209 H F V I+ +G S+R Sbjct: 203 HCQTFRVSCHITKFQITTEGKGSSRR 228 >gi|222111791|ref|YP_002554055.1| ribonuclease iii [Acidovorax ebreus TPSY] gi|221731235|gb|ACM34055.1| ribonuclease III [Acidovorax ebreus TPSY] Length = 228 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 73/208 (35%), Positives = 109/208 (52%), Gaps = 6/208 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M STL++R+ + F++ SLL++ALTH S S + ERLEFLGD +L L +S+LLF Sbjct: 1 MQPASLSTLQQRLQHQFSDASLLQRALTHRSFS---ADHNERLEFLGDSVLSLAVSSLLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EGELS LV ++ Q+A L L +R+ K SI AD +E Sbjct: 58 RRMRDLPEGELSRVRALLVKQDSLHQIAVRLQLPPVLRLGEGEAKSGGKLRPSILADALE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G E A V + ++ + + + + +DAKT LQEW + P+Y+V Sbjct: 118 AIIGAVYLDAGYECAEQLVHRLFEGVELSPRLQEAAKDAKTALQEWLQGRKMNLPQYRVV 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMD 205 +G H+ F V E+ +G Sbjct: 178 STTGAAHNQVFHVECEVVELQRVERGSG 205 >gi|121595570|ref|YP_987466.1| ribonuclease III [Acidovorax sp. JS42] gi|120607650|gb|ABM43390.1| RNAse III [Acidovorax sp. JS42] Length = 228 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 73/208 (35%), Positives = 109/208 (52%), Gaps = 6/208 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M STL++R+ + F++ SLL++ALTH S S + ERLEFLGD +L L +S+LLF Sbjct: 1 MQPASLSTLQQRLQHQFSDASLLQRALTHRSFS---ADHNERLEFLGDSVLSLAVSSLLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EGELS LV ++ Q+A L L +R+ K SI AD +E Sbjct: 58 RRMRDLPEGELSRVRALLVKQDSLHQIAVRLQLPPVLRLGEGEAKSGGKLRPSILADALE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G E A V + ++ + + + + +DAKT LQEW + P+Y+V Sbjct: 118 AIIGAVYLDAGYECAEQLVHRLFEGVELSPRLQEAAKDAKTALQEWLQGRKMNLPQYRVV 177 Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMD 205 +G H+ F V E+ +G Sbjct: 178 STTGAAHNQVFHVECEVVELQRVERGSG 205 >gi|17506883|ref|NP_492599.1| Ortholog of Drosophila DRoSHa gene family member (drsh-1) [Caenorhabditis elegans] gi|20141625|sp|O01326|RNC_CAEEL RecName: Full=Ribonuclease 3; AltName: Full=Protein drosha; AltName: Full=Ribonuclease III; Short=RNase III gi|15718161|emb|CAB03006.3| C. elegans protein F26E4.10a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 1086 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 13/228 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+R+G F N LL KA T +I ++ + +RLE+LGD +L L++S L+ F Sbjct: 833 FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 892 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG +S+ SLVS +T + V +L F+ + + +AD+VE+ I Sbjct: 893 PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAPYKTPE---LKLKDKADLVEAFI 949 Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV------TPEY 175 ALY+D GIE F+ + R + DAK+ LQ+W A PEY Sbjct: 950 GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRDPSSSEPDMPEY 1009 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V GP ++ F + V G A + + AE A L Sbjct: 1010 RVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANL 1057 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 65/207 (31%), Gaps = 49/207 (23%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------------------------ 38 E+ I Y F +R ++E AL HSS Y Sbjct: 604 NFSLDVFEEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRRKYGAEDKR 663 Query: 39 -------------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 ERLE+LGD ++ L++S L+ EG L+ Sbjct: 664 EKKRVAGIMSLFNIMKGTSGGEPILHNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLAT 723 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 +LV + +A+ + ++ S + A+ E+++AA+YLDGG+ Sbjct: 724 YRTALVQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALANAFEAVMAAIYLDGGLA 783 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTE 160 K + Sbjct: 784 PCDVIFSKAMYGHQPVLKEKWDHINEH 810 >gi|281421655|ref|ZP_06252654.1| ribonuclease 3 [Prevotella copri DSM 18205] gi|281404289|gb|EFB34969.1| ribonuclease 3 [Prevotella copri DSM 18205] Length = 360 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + +G+ + S + AL H SI H + + ERLEFLGD +L ++ +++ Sbjct: 20 YLSLYEILGFYPHDISYYKMALLHKSIMHRNSKGKPVNNERLEFLGDAVLDAVVGDIVYQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV +T +++A+E+ + I + + +V + Sbjct: 80 HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGINQLILSNGHSSSHNSYMGGNAFEALVGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + D + + + K K++L EW+ + + Sbjct: 140 IYLDRGYDACMYFMQKRILAQMINIDKVAYKEVNF-KSKLIEWSQKNRVKLDFVMLDQQK 198 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + P FT V + G+ G SK+ ++QVA+ L++ Sbjct: 199 DKNGSPIFTYQVVLEGVDGGVGKGYSKKESQQVASKTSLEKL 240 >gi|115468004|ref|NP_001057601.1| Os06g0358800 [Oryza sativa Japonica Group] gi|75254269|sp|Q69KJ0|RTL3_ORYSJ RecName: Full=Ribonuclease 3-like protein 3; AltName: Full=Ribonuclease III-like protein 3; Short=RNase III-like protein 3 gi|51091751|dbj|BAD36550.1| CAF protein-like [Oryza sativa Japonica Group] gi|113595641|dbj|BAF19515.1| Os06g0358800 [Oryza sativa Japonica Group] gi|125597181|gb|EAZ36961.1| hypothetical protein OsJ_21299 [Oryza sativa Japonica Group] Length = 299 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 15/239 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58 M + +E +GY F +++L+E+ALTH S + Y+ +YERLE+LGD +L ++S Sbjct: 34 MGPGEVAAVESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSRE 93 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQ 115 +F + + G L+ + V E ++VA L F+R + + S+ Sbjct: 94 VFLTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMY 153 Query: 116 ADVVESLI----AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 L+ + + A + ++ + + D L+ Sbjct: 154 PIHSNGLLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGKHPVSE 213 Query: 172 TPEYKVTFRSG-----PDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVLKREG 224 E+ R G + D TV V I G + K+ A+ AA L + Sbjct: 214 LFEFCQKTRRGVKIVKDEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAKAALDKLK 272 >gi|297812215|ref|XP_002873991.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297319828|gb|EFH50250.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 1693 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 29/243 (11%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE ++ Y F ++ LL +A H S + Y+RLEFLGD +L L+++ F F Sbjct: 1283 NLEALENQLDYNFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFP 1342 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD------------------ 106 K G+L+ + V+ + + VA L F+ S + Sbjct: 1343 KLKPGQLTDLRSLSVNNKALANVAVSFSLKRFLFCESVYLHEAIEDYTNFRAASPLASGP 1402 Query: 107 -VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEW 164 + D+VES + AL+LD G + + + + EL E Sbjct: 1403 SEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIEL 1462 Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMDCSKRAAEQVAAAEVLK 221 + G F+V ++++ +KR + + AA ++ Sbjct: 1463 CQSYKWDREISATKKDGG------FSVELKVTKKGCCLTVSATGRNKRESTKKAAQLMIT 1516 Query: 222 REG 224 Sbjct: 1517 SLK 1519 Score = 39.1 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 2/77 (2%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +ALT S ERLE LGD L +S LF H D EGEL+ R + V+ Sbjct: 1097 LEALTTEKCHERL--SLERLEVLGDAFLKFAVSRHLFLHHDRLDEGELTRRRSKAVNNSN 1154 Query: 84 CSQVARELDLASFIRVS 100 ++A + +L +IR Sbjct: 1155 LCRLAIKRNLQVYIRDQ 1171 >gi|83652594|gb|ABC36657.1| ribonuclease III, putative [Burkholderia thailandensis E264] Length = 487 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 6/206 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF Sbjct: 18 SMPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQR 74 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++ Sbjct: 75 FSKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 134 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 I A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 135 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 194 Query: 181 SGPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 195 HGAAHNQQFEVECTVPKLDIKVSGSG 220 >gi|256397117|ref|YP_003118681.1| ribonuclease III [Catenulispora acidiphila DSM 44928] gi|256363343|gb|ACU76840.1| ribonuclease III [Catenulispora acidiphila DSM 44928] Length = 276 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 104/234 (44%), Gaps = 21/234 (8%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 L R+G + L+++ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 19 EDLIARLGL-PVDARLIDRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYTTHS 77 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ +++V+++ ++VAR L L ++++ SI AD +E+LI Sbjct: 78 ELPEGQLAKLRSAVVNSKALAEVARGLRLGDYVKLGRGEETTGGRDKASILADTLEALIG 137 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGP 183 ++YLD GIEVA V + + S + A G+ +GP Sbjct: 138 SVYLDHGIEVAFDLVRRLFGPLIATSATLGAGLDWKTSLQELTAVAGIGVPDYRVTETGP 197 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR-----------------AAEQVAAAEVL 220 DHD F + G G SK+ AE +AA VL Sbjct: 198 DHDKFFEADACVGGTVYGHGSGRSKKEAEQQAAEEAWRTIRETHAEALAAKGVL 251 >gi|332005448|gb|AED92831.1| dicer-like protein 4 [Arabidopsis thaliana] Length = 1688 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 88/243 (36%), Gaps = 29/243 (11%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 TLE ++ Y F ++ LL +A H S + Y+RLEFLGD +L L+++ F F Sbjct: 1277 NLETLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFP 1336 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD------------------ 106 K G+L+ + V+ E + VA L F+ S + Sbjct: 1337 KLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQ 1396 Query: 107 -VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEW 164 + D+VES + AL+LD G + + + + EL E Sbjct: 1397 SEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIEL 1456 Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI--SGLAPA-QGMDCSKRAAEQVAAAEVLK 221 + D FTV +++ +G +KR + AA ++ Sbjct: 1457 CQSYKWDREISATKK------DGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMIT 1510 Query: 222 REG 224 Sbjct: 1511 NLK 1513 Score = 39.1 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +ALT S ERLE LGD L +S LF H DS EGEL+ R +++V+ Sbjct: 1090 LEALTTEKCHERL--SLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSN 1147 Query: 84 CSQVARELDLASFIRVS 100 ++A + +L +IR Sbjct: 1148 LCRLAIKKNLQVYIRDQ 1164 >gi|261878907|ref|ZP_06005334.1| ribonuclease III [Prevotella bergensis DSM 17361] gi|270334489|gb|EFA45275.1| ribonuclease III [Prevotella bergensis DSM 17361] Length = 366 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 5/220 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63 +L + IG+ + S + AL H S++ + + ERLEFLGD IL + +++ HF Sbjct: 28 SLYRIIGFYPHDISHYKMALLHKSVTQHNKMGKRVNNERLEFLGDAILDAAVGDIVYRHF 87 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 KEG L+ + LV +T +++A+EL + I + + +V ++ Sbjct: 88 PGKKEGFLTNTRSKLVQRDTLNKLAKELGINDLILSNGCSSSHNSYMGGNAFEALVGAIY 147 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 D + + + K K++L EW+ + Sbjct: 148 LDRGYDACMHFLKKRILAQMINIDKMAYKEVNF-KSKLIEWSQKNHIKMDFELLKEDKDK 206 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + P F+ V + G+A +G SK+ ++Q A E LKR Sbjct: 207 NGSPTFSYRVMLEGIAGCEGTGFSKKESQQKACKETLKRL 246 >gi|145358264|ref|NP_197532.3| DCL4 (DICER-LIKE 4); RNA binding / protein binding / ribonuclease III [Arabidopsis thaliana] gi|322510021|sp|P84634|DCL4_ARATH RecName: Full=Dicer-like protein 4 gi|73672051|gb|AAZ80387.1| dicer-like 4 [Arabidopsis thaliana] gi|332005447|gb|AED92830.1| dicer-like protein 4 [Arabidopsis thaliana] Length = 1702 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 88/243 (36%), Gaps = 29/243 (11%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 TLE ++ Y F ++ LL +A H S + Y+RLEFLGD +L L+++ F F Sbjct: 1291 NLETLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFP 1350 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD------------------ 106 K G+L+ + V+ E + VA L F+ S + Sbjct: 1351 KLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQ 1410 Query: 107 -VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEW 164 + D+VES + AL+LD G + + + + EL E Sbjct: 1411 SEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIEL 1470 Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI--SGLAPA-QGMDCSKRAAEQVAAAEVLK 221 + D FTV +++ +G +KR + AA ++ Sbjct: 1471 CQSYKWDREISATKK------DGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMIT 1524 Query: 222 REG 224 Sbjct: 1525 NLK 1527 Score = 39.1 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +ALT S ERLE LGD L +S LF H DS EGEL+ R +++V+ Sbjct: 1104 LEALTTEKCHERL--SLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSN 1161 Query: 84 CSQVARELDLASFIRVS 100 ++A + +L +IR Sbjct: 1162 LCRLAIKKNLQVYIRDQ 1178 >gi|253997000|ref|YP_003049064.1| ribonuclease III [Methylotenera mobilis JLW8] gi|253983679|gb|ACT48537.1| ribonuclease III [Methylotenera mobilis JLW8] Length = 230 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 101/213 (47%), Gaps = 9/213 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 MS L +R+ + F N SLL +ALTH S + ++ ERLEFLGD L +I+ L+ Sbjct: 1 MSK---QELLRRLSHQFVNESLLTQALTHRSYA---GQNNERLEFLGDGALNFIIAHQLY 54 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG+LS LV T S++A L+L + + K SI AD +E Sbjct: 55 QRFPKLAEGDLSRLRAQLVKEATLSEIALSLNLGDALLLGEGELKSAGWRRPSILADALE 114 Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G E A TFV K + +D K+ LQE ++ PEY V Sbjct: 115 AIIGAVYLDSGFEAAQTFVLGLYAGKLETIDPKVIDKDPKSLLQELLQSRKIAVPEYTVI 174 Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRA 210 SG H+ +F V + G S+R Sbjct: 175 HTSGEAHEQKFVVECLVEKHQIRTVGEGRSRRI 207 >gi|307150264|ref|YP_003885648.1| ribonuclease III [Cyanothece sp. PCC 7822] gi|306980492|gb|ADN12373.1| ribonuclease III [Cyanothece sp. PCC 7822] Length = 228 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 103/222 (46%), Gaps = 12/222 (5%) Query: 16 AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 F N+ L ALTH S + + E ERLEFLGD IL + L+ + E +L+ Sbjct: 6 TFKNQQLWLCALTHRSYINEHSGINEHNERLEFLGDAILAFVAGEFLYQRYPHLSEAQLT 65 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV ++ A +L + +R+ KD ++ +D E++I A YLD G+ Sbjct: 66 RLRAKLVDETQLARFAVQLGIGELMRLGKGAIKDGGRENPALLSDTFEAIIGAYYLDAGV 125 Query: 133 EVAGTFVDKYWKQRALKSG---------KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + FV ++ A K DAK Q+WA A+F PEY + SGP Sbjct: 126 DAVRNFVHPLFQSVADILMVSQSEVATTKNLLDAKNRFQQWALAEFSQNPEYIIIEESGP 185 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 DH FT V++ G+ G K+ A + AA E LK+ G+ Sbjct: 186 DHAKEFTAQVKVQGIVYGVGRGRRKQEATKAAAEEALKKVGL 227 >gi|22125197|ref|NP_668620.1| ribonuclease III [Yersinia pestis KIM 10] gi|45442304|ref|NP_993843.1| ribonuclease III [Yersinia pestis biovar Microtus str. 91001] gi|51597206|ref|YP_071397.1| ribonuclease III [Yersinia pseudotuberculosis IP 32953] gi|108808446|ref|YP_652362.1| ribonuclease III [Yersinia pestis Antiqua] gi|108811369|ref|YP_647136.1| ribonuclease III [Yersinia pestis Nepal516] gi|145598837|ref|YP_001162913.1| ribonuclease III [Yersinia pestis Pestoides F] gi|149365390|ref|ZP_01887425.1| ribonuclease III [Yersinia pestis CA88-4125] gi|153949383|ref|YP_001400117.1| ribonuclease III [Yersinia pseudotuberculosis IP 31758] gi|162419239|ref|YP_001607935.1| ribonuclease III [Yersinia pestis Angola] gi|165925157|ref|ZP_02220989.1| ribonuclease III [Yersinia pestis biovar Orientalis str. F1991016] gi|165937011|ref|ZP_02225576.1| ribonuclease III [Yersinia pestis biovar Orientalis str. IP275] gi|166008358|ref|ZP_02229256.1| ribonuclease III [Yersinia pestis biovar Antiqua str. E1979001] gi|166212532|ref|ZP_02238567.1| ribonuclease III [Yersinia pestis biovar Antiqua str. B42003004] gi|167399049|ref|ZP_02304573.1| ribonuclease III [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421411|ref|ZP_02313164.1| ribonuclease III [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423187|ref|ZP_02314940.1| ribonuclease III [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218929790|ref|YP_002347665.1| ribonuclease III [Yersinia pestis CO92] gi|229838281|ref|ZP_04458440.1| RNase III [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895523|ref|ZP_04510694.1| RNase III [Yersinia pestis Pestoides A] gi|229898845|ref|ZP_04513990.1| RNase III [Yersinia pestis biovar Orientalis str. India 195] gi|229901619|ref|ZP_04516741.1| RNase III [Yersinia pestis Nepal516] gi|270489808|ref|ZP_06206882.1| ribonuclease III [Yersinia pestis KIM D27] gi|284988625|ref|YP_001719940.2| ribonuclease III [Yersinia pseudotuberculosis YPIII] gi|284988628|ref|YP_001873415.2| ribonuclease III [Yersinia pseudotuberculosis PB1/+] gi|22654064|sp|Q8ZD72|RNC_YERPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|73917588|sp|Q667V1|RNC_YERPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122980240|sp|Q1CKE4|RNC_YERPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|123372250|sp|Q1C555|RNC_YERPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043377|sp|A7FFT9|RNC_YERP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|189043378|sp|A4TKX8|RNC_YERPP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|238687295|sp|A9R402|RNC_YERPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|21958062|gb|AAM84871.1|AE013732_3 RNase III, ds RNA [Yersinia pestis KIM 10] gi|45437168|gb|AAS62720.1| ribonuclease III [Yersinia pestis biovar Microtus str. 91001] gi|51590488|emb|CAH22128.1| ribonuclease III [Yersinia pseudotuberculosis IP 32953] gi|108775017|gb|ABG17536.1| RNAse III [Yersinia pestis Nepal516] gi|108780359|gb|ABG14417.1| RNAse III [Yersinia pestis Antiqua] gi|115348401|emb|CAL21337.1| ribonuclease III [Yersinia pestis CO92] gi|145210533|gb|ABP39940.1| RNAse III [Yersinia pestis Pestoides F] gi|149291803|gb|EDM41877.1| ribonuclease III [Yersinia pestis CA88-4125] gi|152960878|gb|ABS48339.1| ribonuclease III [Yersinia pseudotuberculosis IP 31758] gi|162352054|gb|ABX86002.1| ribonuclease III [Yersinia pestis Angola] gi|165914874|gb|EDR33486.1| ribonuclease III [Yersinia pestis biovar Orientalis str. IP275] gi|165922764|gb|EDR39915.1| ribonuclease III [Yersinia pestis biovar Orientalis str. F1991016] gi|165992740|gb|EDR45041.1| ribonuclease III [Yersinia pestis biovar Antiqua str. E1979001] gi|166206463|gb|EDR50943.1| ribonuclease III [Yersinia pestis biovar Antiqua str. B42003004] gi|166960900|gb|EDR56921.1| ribonuclease III [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051553|gb|EDR62961.1| ribonuclease III [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057357|gb|EDR67103.1| ribonuclease III [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681548|gb|EEO77642.1| RNase III [Yersinia pestis Nepal516] gi|229688393|gb|EEO80464.1| RNase III [Yersinia pestis biovar Orientalis str. India 195] gi|229694647|gb|EEO84694.1| RNase III [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701329|gb|EEO89357.1| RNase III [Yersinia pestis Pestoides A] gi|270338312|gb|EFA49089.1| ribonuclease III [Yersinia pestis KIM D27] gi|320016075|gb|ADV99646.1| RNase III [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 226 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIHTIERLILEWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRK 210 >gi|296328081|ref|ZP_06870615.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154857|gb|EFG95640.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 234 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 101/203 (49%), Gaps = 8/203 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M LE ++ Y F +R+LL+ AL H S+ + +E + ERLE LGD +L L+++ Sbjct: 1 MK--NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVA 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ ++ +A EG ++ +VS ++++R++ + F+ +S SI A Sbjct: 59 EYLYKNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILA 118 Query: 117 DVVESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 D E+++ A+Y+D ++ A F ++ + D K+ LQE+ +F P Sbjct: 119 DSFEAILGAVYIDSNLDEARVFALSHIKQYIDHIEENEDILDFKSILQEYVQKEFKTVPT 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISG 197 Y++ GPDH F + V + Sbjct: 179 YELVAERGPDHMKEFEIQVIVGN 201 >gi|17552834|ref|NP_498761.1| DiCer Related family member (dcr-1) [Caenorhabditis elegans] gi|21431882|sp|P34529|DCR1_CAEEL RecName: Full=Endoribonuclease dcr-1 gi|15145374|gb|AAA28101.2| Dicer related protein 1, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 1845 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 80/255 (31%), Gaps = 38/255 (14%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 +++ LE++IGY F R+ L +A TH+S ++ Y+RLEFLGD +L +I+ LF Sbjct: 1577 QFTQLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDS 1636 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD------ 117 G L+ ++LV+ + +A + + + + ++ Sbjct: 1637 RQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSERNFDTN 1696 Query: 118 -----------------------------VVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 + +A T + Sbjct: 1697 FNAEMYMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMRG 1756 Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + + R R TV V ++ + GM + Sbjct: 1757 TIELCCANPPRSPIRELMEFEQSKVRFSKMERILESGKVRVTVEV-VNNMRF-TGMGRNY 1814 Query: 209 RAAEQVAAAEVLKRE 223 R A+ AA LK Sbjct: 1815 RIAKATAAKRALKYL 1829 Score = 39.1 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 2/102 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALT S+ + S ER E +GD L + L++ EG+LS + V Sbjct: 1329 PCLLLTALTTSNAADGM--SLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEV 1386 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 S ++ ++L + I + D I ++ Sbjct: 1387 SNCNLYRLGKKLGIPQLIVANKFDAHDSWLPPCYIPTCDFKA 1428 >gi|159036823|ref|YP_001536076.1| ribonuclease III [Salinispora arenicola CNS-205] gi|157915658|gb|ABV97085.1| Ribonuclease III [Salinispora arenicola CNS-205] Length = 252 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 6/198 (3%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LLE+ALTH S ++ + ERLEFLGD +LG++I+T LF++ EG+L+ Sbjct: 23 DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDLPEGQLAKLRA 82 Query: 77 SLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S+V+ ++VAR L ++ + SI AD +E+L+ A+YL G++ Sbjct: 83 SVVNMRALAEVARALGPTGLGPYLLLGKGEETTGGRDKASILADTLEALLGAIYLQCGLD 142 Query: 134 VAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 A T + + + A +G+ + A G+ +GPDH FT Sbjct: 143 TAATVIHRLFDPLMADSAGRGAALDWKTSLQELTAAQGLGVPEYRIEGTGPDHLKTFTAW 202 Query: 193 VEISGLAPAQGMDCSKRA 210 V ++G SK+ Sbjct: 203 VVVAGQRYGGAEGRSKKE 220 >gi|307703518|ref|ZP_07640460.1| ribonuclease III [Streptococcus oralis ATCC 35037] gi|307622925|gb|EFO01920.1| ribonuclease III [Streptococcus oralis ATCC 35037] Length = 190 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 1/180 (0%) Query: 44 EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 FLGD +L LLIS L+ + EG+LS +V E+ + AR+ FI++ Sbjct: 5 NFLGDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGE 64 Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQ 162 K +I D E+ + AL LD + F+ + + + +D KT LQ Sbjct: 65 EKSGGRNRDTILGDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQ 124 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E V Y+VT +GP HD F V V + G + +G SK+ AEQ AA +++ Sbjct: 125 ELLQVNGDVDIRYQVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 184 >gi|299142079|ref|ZP_07035213.1| ribonuclease 3 [Prevotella oris C735] gi|298576541|gb|EFI48413.1| ribonuclease 3 [Prevotella oris C735] Length = 363 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 YS+L +G+ N S + AL H SI + + ERLEFLGD IL ++ +++ Sbjct: 20 YSSLYAILGFYPRNISYYKLALMHKSIMRRNAKGKPVNNERLEFLGDAILDAIVGDIVYQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV +T +++A EL ++ I + + +V + Sbjct: 80 HFPGKREGFLTNTRSKLVQRDTLNKLANELGISKLILSNGRSSSHNSYMGGNAFEALVGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + D + + + K K++L EW+ + Sbjct: 140 VYLDRGYDACMNFMQHRILTQMINIDKVAYKEVNF-KSKLIEWSQKNRVKLDFEILEQGK 198 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + P F V I G+ G+ SK+ ++Q+A L++ Sbjct: 199 DKNGSPIFNYKVVIEGIDGCDGVGYSKKESQQLACKLTLEQL 240 >gi|123441363|ref|YP_001005350.1| ribonuclease III [Yersinia enterocolitica subsp. enterocolitica 8081] gi|189043376|sp|A1JKK3|RNC_YERE8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|122088324|emb|CAL11115.1| ribonuclease III [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 226 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 109/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIHTIERLILAWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRK 210 >gi|332162691|ref|YP_004299268.1| ribonuclease III [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|33332418|gb|AAQ11416.1| ribonuclease III [Yersinia enterocolitica] gi|318606796|emb|CBY28294.1| ribonuclease III [Yersinia enterocolitica subsp. palearctica Y11] gi|325666921|gb|ADZ43565.1| ribonuclease III [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 226 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 109/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQDLLLQALTHRSAS---SKHNERLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + ++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIHTIERLILAWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRK 210 >gi|238762797|ref|ZP_04623766.1| Ribonuclease 3 [Yersinia kristensenii ATCC 33638] gi|238699102|gb|EEP91850.1| Ribonuclease 3 [Yersinia kristensenii ATCC 33638] Length = 226 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I G + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIHTVGRLILDWYRSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRK 210 >gi|302344776|ref|YP_003813129.1| ribonuclease III [Prevotella melaninogenica ATCC 25845] gi|302149813|gb|ADK96075.1| ribonuclease III [Prevotella melaninogenica ATCC 25845] Length = 365 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + IG + S + AL H S++ + + ERLEFLGD IL ++ +++ Sbjct: 31 YLSLYQIIGIIPHDISYYKTALLHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 90 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + +V +T +++A+E+ + I + + +V + Sbjct: 91 HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGIGQLILSNGQTSSHNSYLGGNAFEALVGA 150 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 L + ++ V + K K++L EW+ + + Sbjct: 151 LYLDHGYNACMKFMKQQVLGKLINIDKVAYKEVNF-KSKLIEWSQKNKVNMEFKLIENQK 209 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P F V + G+ +G SK+ ++Q A+ L+R Sbjct: 210 DKQGSPTFHFQVIMEGIPCGEGHGYSKKESQQEASKLTLQRL 251 >gi|94970880|ref|YP_592928.1| ribonuclease III [Candidatus Koribacter versatilis Ellin345] gi|94552930|gb|ABF42854.1| RNAse III [Candidatus Koribacter versatilis Ellin345] Length = 258 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 105/230 (45%), Gaps = 22/230 (9%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---------YERLEFLGDRILG 52 + + LEK + + F + LL +ALTHSS + ++ E+LEF+GD +L Sbjct: 3 KSRDIAALEKALDHKFEEQELLVRALTHSSYAREQRDHIHDNSVPNDNEQLEFIGDSVLA 62 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 + S L F +EGELS LVSA Q AR LDL F+R+ + + Sbjct: 63 FVTSQELVKKFPHFQEGELSKLRAYLVSARHLIQTARNLDLGKFLRLGRGEERSGGRSKS 122 Query: 113 SIQADVVESLIAALYLDGGIEVAGTF-------VDKYWKQRALKSGKFRRDAKTELQEWA 165 +I D +E++IAA+YLDGG+ VA F + + S D K+ LQE A Sbjct: 123 AILVDALEAVIAAIYLDGGLRVAQKFILREIVRPELKRMETEHGSALPVTDYKSALQEQA 182 Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEI--SG----LAPAQGMDCSKR 209 HA Y V GP+H FTV I G A+ +K+ Sbjct: 183 HAAGRKRIVYAVVKEEGPEHRKTFTVEARILSDGNEAPEFVARAEGPTKK 232 >gi|5579373|gb|AAD45518.1|AF160248_1 ribonuclease [Caenorhabditis elegans] Length = 860 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 13/228 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+R+G F N LL KA T +I ++ + +RLE+LGD +L L++S L+ F Sbjct: 607 FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 666 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG +S+ SLVS +T + V +L F+ + + +AD+VE+ I Sbjct: 667 PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAPYKTPE---LKLKDKADLVEAFI 723 Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV------TPEY 175 ALY+D GIE F+ + R + DAK+ LQ+W A PEY Sbjct: 724 GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRDPSSSEPDMPEY 783 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +V GP ++ F + V G A + + AE A L Sbjct: 784 RVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANL 831 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 65/207 (31%), Gaps = 49/207 (23%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------------------------ 38 E+ I Y F +R ++E AL HSS Y Sbjct: 378 NFSLDVFEEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRRKYGAEDKR 437 Query: 39 -------------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 ERLE+LGD ++ L++S L+ EG L+ Sbjct: 438 EKKRVAGIMSLFNIMKGTSGGEPILHNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLAT 497 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 +LV + +A+ + ++ S + A+ E+++AA+YLDGG+ Sbjct: 498 YRTALVQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALANAFEAVMAAIYLDGGLA 557 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTE 160 K + Sbjct: 558 PCDVIFSKAMYGHQPVLKEKWDHINEH 584 >gi|29424049|gb|AAO73809.1| dicer-1 [Anopheles gambiae] Length = 2259 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 92/270 (34%), Gaps = 54/270 (20%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S S + + Y+RLEFLGD IL LI+ L+ Sbjct: 1982 FEEFEQALGYRFRDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRR 2041 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111 G L+ ++LV+ + +A + S ++V Sbjct: 2042 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFLHLSPGLQEVIDRFVRIQQENGHRITE 2101 Query: 112 -------------------------------------TSIQADVVESLIAALYLDGGIEV 134 DV ES+ A++LD + + Sbjct: 2102 EEYYLPDEDDELGEYGAMGEDGPGEGRGVGEAEDVEVPKALGDVFESIAGAIFLDSDMSL 2161 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + K+ ++E + K + R V VE Sbjct: 2162 DTVWKVYRKMMGPEIEKFSSSVPKSPIRELLEMEPETAKFGKPEKLTDG---RRVRVTVE 2218 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + G +G+ + R A+ AA L++ Sbjct: 2219 VFGKGTFRGIGRNYRIAKCTAAKCALRQLK 2248 Score = 42.2 bits (97), Expect = 0.059, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +++ +ALT S+ + + ERLE +GD L I+T L+ +D+ EG+LS + V Sbjct: 1664 PAIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCRYDNVHEGKLSHLRSKQV 1721 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 S ++ R L + + D +E Sbjct: 1722 SNLNLYRLGRRKRLGDCMIAAKFEPHDNWLPPCYYVPKELE 1762 >gi|58382645|ref|XP_312076.2| AGAP002836-PA [Anopheles gambiae str. PEST] gi|55241936|gb|EAA07793.2| AGAP002836-PA [Anopheles gambiae str. PEST] Length = 2256 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 92/270 (34%), Gaps = 54/270 (20%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S S + + Y+RLEFLGD IL LI+ L+ Sbjct: 1979 FEEFEQALGYRFRDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRR 2038 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111 G L+ ++LV+ + +A + S ++V Sbjct: 2039 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFLHLSPGLQEVIDRFVRIQQENGHRITE 2098 Query: 112 -------------------------------------TSIQADVVESLIAALYLDGGIEV 134 DV ES+ A++LD + + Sbjct: 2099 EEYYLPDEDDELGEYGAMGEDGPGEGRGVGEAEDVEVPKALGDVFESIAGAIFLDSDMSL 2158 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + K+ ++E + K + R V VE Sbjct: 2159 DTVWKVYRKMMGPEIEKFSSSVPKSPIRELLEMEPETAKFGKPEKLTDG---RRVRVTVE 2215 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + G +G+ + R A+ AA L++ Sbjct: 2216 VFGKGTFRGIGRNYRIAKCTAAKCALRQLK 2245 Score = 42.2 bits (97), Expect = 0.059, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +++ +ALT S+ + + ERLE +GD L I+T L+ +D+ EG+LS + V Sbjct: 1664 PAIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCRYDNVHEGKLSHLRSKQV 1721 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 S ++ R L + + D +E Sbjct: 1722 SNLNLYRLGRRKRLGDCMIAAKFEPHDNWLPPCYYVPKELE 1762 >gi|149200806|ref|ZP_01877781.1| Ribonuclease III [Roseovarius sp. TM1035] gi|149145139|gb|EDM33165.1| Ribonuclease III [Roseovarius sp. TM1035] Length = 227 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 79/210 (37%), Positives = 117/210 (55%), Gaps = 3/210 (1%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + + R+G+ F N +LL +ALTHSS++ ++ +RLEFLGDR+LGL+++ L Sbjct: 1 MKLSADIKAFQARLGHEFTNAALLVRALTHSSMATPNRDDNQRLEFLGDRVLGLVMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + A EG+L+ RFN+LV E C+ VARE+DL +++ ++ D + Sbjct: 61 LSQDQGATEGQLAPRFNALVRKEACADVAREIDLGGVLKLGRSEMLSGGRRKEALLGDAM 120 Query: 120 ESLI-AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+ + AA+YLD G E A V + W R + RDAKT LQEWA A+ P+Y Sbjct: 121 EA-VIAAVYLDAGFETARGVVLRLWGARLGAVKEDARDAKTSLQEWAQARGLPPPDYVEL 179 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 R GPDH P FT+ ++ A+ SK Sbjct: 180 ARKGPDHAPIFTICAQLKSGQRAEATAGSK 209 >gi|281424694|ref|ZP_06255607.1| ribonuclease III [Prevotella oris F0302] gi|281401064|gb|EFB31895.1| ribonuclease III [Prevotella oris F0302] Length = 363 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 YS+L +G+ N S + AL H SI + + ERLEFLGD IL ++ +++ Sbjct: 20 YSSLYAILGFYPRNISYYKLALMHKSIMRRNAKGKPVNNERLEFLGDAILDAIVGDIVYQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV +T +++A EL ++ I + + +V + Sbjct: 80 HFPGKREGFLTNTRSKLVQRDTLNKLANELGISKLILSNGRSSSHNSYMGGNAFEALVGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + D + + + K K++L EW+ + Sbjct: 140 VYLDRGYDACMNFMQHRILTQMINIDKVAYKEVNF-KSKLIEWSQKNRVKLNFEILEQGK 198 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + P F V I G+ G+ SK+ ++Q+A L++ Sbjct: 199 DKNGSPIFNYKVVIEGIDGCDGVGYSKKESQQLACKLTLEQL 240 >gi|195624966|gb|ACG34313.1| endoribonuclease Dicer [Zea mays] Length = 329 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 90/239 (37%), Gaps = 15/239 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58 MSA + +E +GY F ++SL+E ALTH S + ++YERLE+LGD +L L+S Sbjct: 43 MSAKDVTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSRE 102 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 +F + + + G L+ + V E ++VA L F+R + +D F Sbjct: 103 VFRTYRTLQPGPLTRLRAANVDTEKLARVAVHRGLYRFLRHKAPKLQDQICFFIEEMRKY 162 Query: 119 VESLIA-------ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 + + A + ++ + + D L+ Sbjct: 163 PVHSNGLLDPPKVLCDIVESLIGAIYLDSNFDQEEVWRVFRTLADPLIGLETLGKHPVSE 222 Query: 172 TPEYKVTFRSG-----PDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKREG 224 E+ G + D V V I G + K A+ AA + L + Sbjct: 223 LFEFCQKTHRGVKFLKDEWDKSLKVQVLIDGEVVGSAIYGPKKEIAQNRAAKDALDKLK 281 >gi|323343670|ref|ZP_08083897.1| ribonuclease 3 [Prevotella oralis ATCC 33269] gi|323095489|gb|EFZ38063.1| ribonuclease 3 [Prevotella oralis ATCC 33269] Length = 361 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 YS+L + IG+ N S + AL H SI + + ERLEFLGD IL ++ ++++ Sbjct: 22 YSSLYRIIGFYPRNISYYKLALMHKSIMRRNSKGKPVNNERLEFLGDAILDAIVGHIVYD 81 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV +T +++A+E+ + I + + +V + Sbjct: 82 HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGINRLILSNGRSSSHNSYMGGNAFEALVGA 141 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + D + + + K K++L EW+ + + Sbjct: 142 IYLDRGYDACMRFMNKRILAQMINIDKVAYKEVNF-KSKLIEWSQKNRVRMEFKMLDQKK 200 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + P F +V + G+ G SK+ ++Q+A+ L+R Sbjct: 201 DKNGSPMFQYMVCLEGVDGCSGTGYSKKESQQLASKLTLERLK 243 >gi|288801829|ref|ZP_06407271.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella melaninogenica D18] gi|288335871|gb|EFC74304.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella melaninogenica D18] Length = 354 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + IG + S + AL H S++ + + ERLEFLGD IL ++ +++ Sbjct: 20 YLSLYQIIGIIPHDISYYKTALLHKSVARRNAKGKPINNERLEFLGDAILDAIVGDIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + +V +T +++A+E+ + I + + +V + Sbjct: 80 HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGIGQLILSNGQTSSHNSYLGGNAFEALVGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 L + ++ V + K K++L EW+ + + Sbjct: 140 LYLDHGYNACMKFMKQQVLGKLINIDKVAYKEVNF-KSKLIEWSQKNKVNMEFKLIENQK 198 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P F V + G+ +G SK+ ++Q A+ L+R Sbjct: 199 DKQGSPTFHFQVIMEGIPCGEGHGYSKKESQQEASKLTLQRL 240 >gi|307329834|ref|ZP_07608989.1| ribonuclease III [Streptomyces violaceusniger Tu 4113] gi|306884563|gb|EFN15594.1| ribonuclease III [Streptomyces violaceusniger Tu 4113] Length = 278 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 4/204 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 26 LEGRLGYQLE-SALLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTLYRIHPDL 84 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R LDL +FIR+ SI AD +E++I A+ Sbjct: 85 PEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 144 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + KS + A G+ + +GPDH Sbjct: 145 YLDQGLDAAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVSETGPDH 204 Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209 + FT + G+A G SK+ Sbjct: 205 EKTFTAAARVGGVAYGTGTGRSKK 228 >gi|297156899|gb|ADI06611.1| ribonuclease III [Streptomyces bingchenggensis BCW-1] Length = 276 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 4/204 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 27 LEGRLGYQLE-SALLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTLYRIHPDL 85 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R LDL +FIR+ SI AD +E++I A+ Sbjct: 86 PEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 145 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + +S + A G+ + +GPDH Sbjct: 146 YLDKGLDAAAELVHRLFDPLIDRSSNLGAGLDWKTSLQELTATEGLGVPEYLVSETGPDH 205 Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209 + FT + G+A G SK+ Sbjct: 206 EKTFTAAARVGGVAYGTGTGRSKK 229 >gi|224825223|ref|ZP_03698329.1| Ribonuclease III [Lutiella nitroferrum 2002] gi|224602894|gb|EEG09071.1| Ribonuclease III [Lutiella nitroferrum 2002] Length = 238 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 6/210 (2%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 +++ L +GY F LL +ALTH S + ER EF+GD IL ++ +LF+ Sbjct: 7 EVKFGRLSVALGYRFTRPELLRQALTHRSFG---SPNNERFEFIGDSILNYTVARMLFDR 63 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F S EGELS +LV+ + +++A L L ++ + K SI AD +E+ Sbjct: 64 FPSLSEGELSRLRANLVNQSSLAEIALGLGLGDYLYLGEGELKSGGFNRPSILADALEAT 123 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 AA+ D A V + ++QR + K +DAKT LQE A+ P+Y++ + Sbjct: 124 FAAVSFDTDFAAAENVVRRLYEQRVAAIDPTKHAKDAKTRLQEALQARKLALPKYRILSQ 183 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKR 209 SG H+ F V ++ L G S+R Sbjct: 184 SGEAHEQWFKVECDLGELAVIVTGEGGSRR 213 >gi|302764440|ref|XP_002965641.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii] gi|300166455|gb|EFJ33061.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii] Length = 524 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 86/246 (34%), Gaps = 30/246 (12%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLF 60 +++ + LE +GY+F +R+LL +ALTHSS + YERLEF+GD +L L++ ++ Sbjct: 191 NSIDFEGLENTLGYSFRSRNLLAQALTHSSSRQASMVPIYERLEFIGDAVLDHLLTRHIY 250 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + G L+ + +++E+ ++ + L + I S+ ++ E Sbjct: 251 FSYKDLHPGRLTDLRCAALNSESFARAMVKHKLHAHILHESNDFHSQIKTYAKHALNMEE 310 Query: 121 SLIA-----------------------ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + I G V + Q + Sbjct: 311 NAIYSYGFGAVKAPKVLGDVFQSLVGAVYIDSGLNLDQVWKVFEPLLQPLVTPEAVPIHP 370 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 EL E F + +G + K+ A+++AA Sbjct: 371 VRELYELCDKHLKKLEWDYSLSGD------LFLARALVGNKVLGRGTNVQKKMAKKLAAI 424 Query: 218 EVLKRE 223 + + Sbjct: 425 NAIAKL 430 Score = 45.7 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 10/145 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M A++ K I Y +L +ALT ++ Y YER+E LGD L +ST L+ Sbjct: 26 MQAIQLR---KAINYNIPASKIL-EALTAANCHEPY--CYERIELLGDAYLKWAVSTRLY 79 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT----SIQA 116 F EGEL++ ++S +A E L +++R++ + + + + A Sbjct: 80 LKFSDFPEGELTITRGKIISNSALHYLALEKGLETYVRINPFVPGREPTDLQELSSKVLA 139 Query: 117 DVVESLIAALYLDGGIEVAGTFVDK 141 +VVE+LI A Y+ G + A V+ Sbjct: 140 NVVEALIGAYYVHHGDKGARHVVEW 164 >gi|325268333|ref|ZP_08134966.1| ribonuclease 3 [Prevotella multiformis DSM 16608] gi|324989475|gb|EGC21425.1| ribonuclease 3 [Prevotella multiformis DSM 16608] Length = 356 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + IG + + + AL H S++ + + ERLEFLGD IL ++ +++ Sbjct: 20 YLSLYQIIGIIPHDITYYKTALLHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + +V +T +++A+E+ + I + + +V + Sbjct: 80 HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGINQLILSNGHSSSHNSYLGGNAFEALVGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 L + ++ T + + K K++L EW+ + + Sbjct: 140 LYLDHGYNACMQFMKTRILGELINIDKVAYKEVNF-KSKLIEWSQKNKVKMEFKLIENQK 198 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P F V + GL +G SK+ ++Q A+ L+R Sbjct: 199 DKQGSPTFYFQVLMEGLPCGEGRGYSKKESQQEASKLTLQRL 240 >gi|119713601|gb|ABL97652.1| ribonuclease III [uncultured marine bacterium EB0_39H12] Length = 218 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 14/224 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M Y+ LE Y+F + L + ALTH S+S + ERLEFLGD IL L +S LF Sbjct: 1 MKNSAYTNLE----YSFQDEELFQLALTHKSLSSH---NNERLEFLGDAILNLYVSERLF 53 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N + + KEG+L+ S+VS E +VA L+L++ I++ SI +V+E Sbjct: 54 NTYGNLKEGKLTRFKASIVSRENLHRVAINLELSNHIKLGKGESLQGN----SILGNVLE 109 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A++LD +D +K LK + +D K+ LQE ++ P Y + Sbjct: 110 ALIGAIFLDSDYSETKNVLDNIFKDDFLKLVEEEELKDPKSTLQELIQKQYQSLPIYSLN 169 Query: 179 FRSGPDHDPRFTVVVE-ISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + + +F V + G QG +++ AE AA+ +L+ Sbjct: 170 EQISDKKENQFEVTCSVVEGNLVTQGKGNTRKGAELNAASNMLE 213 >gi|313884921|ref|ZP_07818673.1| ribonuclease III [Eremococcus coleocola ACS-139-V-Col8] gi|312619612|gb|EFR31049.1| ribonuclease III [Eremococcus coleocola ACS-139-V-Col8] Length = 233 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 12/217 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M + ++K G F N +L+ A H+S ++ + + ERLEFLGD +L L+ S Sbjct: 1 MEKI-ADIIQKNTGITFTNIEILQTAFCHTSYANEHAKEKLKDNERLEFLGDAVLELITS 59 Query: 57 TLLFNHFDSAKEG---ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 F++ + +L+ LV + + VAR+ L I++ F S Sbjct: 60 ---DFLFNTYPDKPEGQLTRMRAQLVKEPSLALVARKYQLDQLIQLGKGEEASGGRFRDS 116 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 I +D E+ + A+YLD G F+ + K D KT QE ++ V Sbjct: 117 IVSDAFEAFLGAIYLDQGFARVTEFLQQALLKPHLQIIKVINIDYKTLFQEKVQSQGPVN 176 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +Y++ GP H F V + + +QG SK+ Sbjct: 177 IDYRLIKEEGPAHHRLFVVALYLDDQLVSQGQGYSKK 213 >gi|308485595|ref|XP_003104996.1| CRE-DCR-1 protein [Caenorhabditis remanei] gi|308257317|gb|EFP01270.1| CRE-DCR-1 protein [Caenorhabditis remanei] Length = 1941 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 94/256 (36%), Gaps = 40/256 (15%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 +++ LE+RIGY F R+ L +A TH+S ++ Y+RLEFLGD +L +I+ LF Sbjct: 1673 QFANLEERIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDV 1732 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA------- 116 G L+ ++LV+ + +A + + + + A Sbjct: 1733 RQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCADRNFDTN 1792 Query: 117 -----------------------------DVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 DV ES+ A+YLD G + T+ + R+ Sbjct: 1793 FNAEMYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVLFHMMRS 1852 Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 ++ ++E + + + + V V++ GM + Sbjct: 1853 TIDSCCANPPRSPIRELMEL---EASKARFSKMERILESGKVRVTVDVGNNMRFTGMGRN 1909 Query: 208 KRAAEQVAAAEVLKRE 223 R A+ AA LK Sbjct: 1910 YRIAKATAAKRALKYL 1925 Score = 39.1 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 2/102 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALT S+ + S ER E +GD L + L++ EG+LS + V Sbjct: 1425 PCLLLTALTTSNAADGM--SLERFETIGDSFLKFATTDYLYHTLQDQHEGKLSFARSKEV 1482 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 S ++ ++L + I + D + ++ Sbjct: 1483 SNCNLYRLGKKLGIPQLIVANKFDAHDSWLPPCYVPTCDFKA 1524 >gi|75909289|ref|YP_323585.1| ribonuclease III [Anabaena variabilis ATCC 29413] gi|75703014|gb|ABA22690.1| RNAse III [Anabaena variabilis ATCC 29413] Length = 228 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 83/197 (42%), Gaps = 8/197 (4%) Query: 17 FANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F + LL +ALTH S + E ERLEFLGD IL L L+ E EL+ Sbjct: 7 FRDEKLLRRALTHRSYVNENPEEGEHNERLEFLGDAILNFLSGEYLYRSHPDRGEDELTR 66 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 R ++LV + ++ A E+ L +R+ +D ++ + E++I A YLD Sbjct: 67 RRSALVDEKQLAKFAIEVGLDFRMRLGKGAIRDGGYQNPNLLSSTFEAVIGAYYLDNNSN 126 Query: 134 VA----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR-SGPDHDPR 188 + + + D+K QEW G TP +T + SGP H P Sbjct: 127 IEAVRVIIEPLFESVPEQIVVVRSNVDSKNRFQEWVQRNIGPTPPKYLTKQISGPSHAPE 186 Query: 189 FTVVVEISGLAPAQGMD 205 F V + +G+ Sbjct: 187 FQAKVLVGEKEYGEGIG 203 >gi|260061436|ref|YP_003194516.1| putative ribonuclease III [Robiginitalea biformata HTCC2501] gi|88785568|gb|EAR16737.1| putative ribonuclease III [Robiginitalea biformata HTCC2501] Length = 245 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 94/215 (43%), Gaps = 6/215 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + +G+ + + ++A H S++ + + +YERLEFLGD +LG +IS L+N Sbjct: 22 ISRILGFKPKSLEVYKRAFLHRSVNKKDKNGHPMNYERLEFLGDSMLGTIISKHLYNEVP 81 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG L+ + +VS + +++ ++L L +F+ + ++ +V ++ Sbjct: 82 AGDEGYLTKMRSKIVSRKHLNELGKDLGLLNFVESRIPKAHFGENIHGNVFEALVGAIYL 141 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + V + + G+ ++ K E++V +G D Sbjct: 142 DRGYKYCEKFIQSRVIEPYVDIEQLEGQVISYKSLVIEWCQKQK--KEFEFEVYEDTGND 199 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 F V + I G A+ SK+ AE+ A+ Sbjct: 200 PVKHFAVKLHIDGRILAKARATSKKKAEEKASRRA 234 >gi|78065718|ref|YP_368487.1| ribonuclease III [Burkholderia sp. 383] gi|77966463|gb|ABB07843.1| RNAse III [Burkholderia sp. 383] Length = 408 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 SKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|238753924|ref|ZP_04615284.1| Ribonuclease 3 [Yersinia ruckeri ATCC 29473] gi|238707912|gb|EEQ00270.1| Ribonuclease 3 [Yersinia ruckeri ATCC 29473] Length = 226 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVITRLQRKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD GI+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSGIQTVERLILDWYRSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLGEPVVGTGSSRRK 210 >gi|198421916|ref|XP_002122382.1| PREDICTED: similar to rCG20888 [Ciona intestinalis] Length = 2053 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 95/266 (35%), Gaps = 51/266 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S E++I Y F N++ L +A TH+S ++ + Y+RLEFLGD +L LI+ LFN Sbjct: 1787 LSGFERKINYTFKNKAYLLQAFTHASYYYNTVTDCYQRLEFLGDAVLDFLITRHLFNDER 1846 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV------ 118 G L+ ++LV+ + +A D + + S + Q Sbjct: 1847 HHSPGALTDLRSALVNNTIFASLAVHYDFHKYFKSISPELHHIIEDFVMYQQKQEDAQGM 1906 Query: 119 ----------------------------------------VESLIAALYLDGGIEVAGTF 138 ES+ A+Y+D G++++ + Sbjct: 1907 DAHLMRDYDRVEIVAPSSLEKDEEEGENEDVEVPKALGDIFESVAGAIYMDSGMDLSSVW 1966 Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 L ++ ++E + R +D + V VEI G Sbjct: 1967 KVYSVMMLPLIEKFSACVPRSPVRELLEMEPETAKFSCAEKR----YDGKVRVTVEIIGK 2022 Query: 199 APAQGMDCSKRAAEQVAAAEVLKREG 224 +G+ S R A+ AA L+ Sbjct: 2023 GRFKGVGRSYRIAKSAAARRALRYLK 2048 Score = 44.1 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 L+ +ALT S+ S + + ERLE LGD L ++ L+ + + EG+LS + V Sbjct: 1458 PGLILQALTLSNASDGF--NLERLEMLGDSFLKHAVTVYLYCTYPESHEGKLSYMRSKKV 1515 Query: 80 SAETCSQVARELD 92 S ++ ++ Sbjct: 1516 SNYNLYRIGKQFG 1528 >gi|161723174|ref|YP_442265.2| ribonuclease III [Burkholderia thailandensis E264] Length = 469 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 SKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|300770264|ref|ZP_07080143.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33861] gi|300762740|gb|EFK59557.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33861] Length = 229 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 7/225 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHF 63 L+ +G+ N L + A H S++ + S ERLEFLGD ILG +++ LLF + Sbjct: 3 KLKNLLGFVPENIRLYQMAFRHKSVATAIKEGAKNSNERLEFLGDAILGSVVAELLFKKY 62 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ + +VS +Q++R+L L I+ + + S+ D E+L+ Sbjct: 63 PYKDEGFLTEMRSKIVSRANLNQLSRKLGLNELIQYDARMISFPNK-QGSLLGDAFEALV 121 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLD G +F+ + + + + + + P Sbjct: 122 GAVYLDKGYTFTKSFLLNRIIKTHVDIQLLEVTETNFKSRLIEWCQHLGKDVQFLPTANP 181 Query: 184 DHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 + + F++ + G G D +K++AE++AA + + I+ Sbjct: 182 EGESSKMFSIEAIVEGEVCGIGRDFNKKSAEKLAAEKACEYLKIF 226 >gi|159042756|ref|YP_001531550.1| ribonuclease III [Dinoroseobacter shibae DFL 12] gi|189043308|sp|A8LLD9|RNC_DINSH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157910516|gb|ABV91949.1| ribonuclease III [Dinoroseobacter shibae DFL 12] Length = 229 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 80/211 (37%), Positives = 115/211 (54%), Gaps = 3/211 (1%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + S RIG+ F LL +ALTH+S S + + +RLEFLGDR+LGL+++ L Sbjct: 1 MKLSKEISAFCDRIGHRFDRPELLVRALTHASRSTAGRSDNQRLEFLGDRVLGLVMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 A+EG+L+ R+N+LV ETC++VARE+ L +R+ ++ D + Sbjct: 61 LEADPQAREGQLAPRYNALVRKETCAEVAREIGLGDVLRLGRSEMLTGGRRKDALLGDGM 120 Query: 120 ESLIA-ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E++I A+Y D G E A + + W +R RD KT LQEWA A+ P Y + Sbjct: 121 EAVI-AAVYRDAGFEAAKALILRLWGKRIGAVEADARDPKTALQEWAQARGLPPPAYIES 179 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 RSGPDH P FT+ + A A+ SKR Sbjct: 180 ARSGPDHAPVFTISARLETGACAEAQAGSKR 210 >gi|260591983|ref|ZP_05857441.1| ribonuclease 3 [Prevotella veroralis F0319] gi|260536267|gb|EEX18884.1| ribonuclease 3 [Prevotella veroralis F0319] Length = 354 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 87/222 (39%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L IG+ N + AL H SI+ + + ERLEFLGD IL ++ +++ Sbjct: 20 YLSLYHIIGFIPHNIDYYKTALLHKSIARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + +V +T +++A+E+ + I + + +V + Sbjct: 80 HFPYKREGFLTNTRSKIVQRDTLNRLAKEMGINQLILSNGHSSSHNSYMGGNAFEALVGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 L + +E + + K ++ K + + Sbjct: 140 LYLDHGYNACMEFMRKQILGELINIDKVAYKEVNFKSKLIEWSQKNKVNMEFRLIEHEKD 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P F V + +A +G SK+ +Q AA L+R Sbjct: 200 -KQGSPTFHFQVFMEEIACGEGRGYSKKEGQQEAAKLTLQRL 240 >gi|206559398|ref|YP_002230159.1| ribonuclease III [Burkholderia cenocepacia J2315] gi|206561200|ref|YP_002231965.1| ribonuclease III [Burkholderia cenocepacia J2315] gi|198035436|emb|CAR51312.1| ribonuclease III 2 [Burkholderia cenocepacia J2315] gi|198037242|emb|CAR53164.1| ribonuclease III 1 [Burkholderia cenocepacia J2315] Length = 409 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|89900532|ref|YP_523003.1| ribonuclease III [Rhodoferax ferrireducens T118] gi|122479398|sp|Q21XN1|RNC_RHOFD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|89345269|gb|ABD69472.1| RNAse III [Rhodoferax ferrireducens T118] Length = 228 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 110/227 (48%), Gaps = 7/227 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ L+ R+ + F+N LL +ALTH S S + ERLEFLGD +LGL ++ LL+ Sbjct: 1 MNN-GLMALQARLQHEFSNPGLLTRALTHRSFS---LDHNERLEFLGDSVLGLAVADLLY 56 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG+LS +LV +T +A L L IR+ + SI AD +E Sbjct: 57 ERLSTLPEGDLSRVRANLVKQDTLHHLALGLGLPEVIRLGEGEARSGGHKRPSILADALE 116 Query: 121 SLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G VA + +D KTELQEW + P Y+V Sbjct: 117 AVIGAVYLDAGFAVAQGLVRRLFQAVEIKSDMEAIGKDPKTELQEWLQGRKMNLPLYRVV 176 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224 G H F V EI L +G+ S+RA EQ AAA +L+ Sbjct: 177 ATLGAAHKQTFDVECEIVELNFLERGIGGSRRAGEQAAAAAMLQTLK 223 >gi|217420723|ref|ZP_03452228.1| ribonuclease III [Burkholderia pseudomallei 576] gi|237813195|ref|YP_002897646.1| ribonuclease III [Burkholderia pseudomallei MSHR346] gi|217396135|gb|EEC36152.1| ribonuclease III [Burkholderia pseudomallei 576] gi|237506043|gb|ACQ98361.1| ribonuclease III [Burkholderia pseudomallei MSHR346] Length = 467 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|254184210|ref|ZP_04890800.1| ribonuclease III [Burkholderia pseudomallei 1655] gi|184214741|gb|EDU11784.1| ribonuclease III [Burkholderia pseudomallei 1655] Length = 467 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|167903627|ref|ZP_02490832.1| ribonuclease III [Burkholderia pseudomallei NCTC 13177] Length = 467 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|134277308|ref|ZP_01764023.1| ribonuclease III [Burkholderia pseudomallei 305] gi|134250958|gb|EBA51037.1| ribonuclease III [Burkholderia pseudomallei 305] Length = 467 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|126454458|ref|YP_001067087.1| ribonuclease III [Burkholderia pseudomallei 1106a] gi|167825159|ref|ZP_02456630.1| ribonuclease III [Burkholderia pseudomallei 9] gi|167846656|ref|ZP_02472164.1| ribonuclease III [Burkholderia pseudomallei B7210] gi|167911876|ref|ZP_02498967.1| ribonuclease III [Burkholderia pseudomallei 112] gi|242317956|ref|ZP_04816972.1| ribonuclease III [Burkholderia pseudomallei 1106b] gi|254191245|ref|ZP_04897749.1| ribonuclease III [Burkholderia pseudomallei Pasteur 52237] gi|254195715|ref|ZP_04902141.1| ribonuclease III [Burkholderia pseudomallei S13] gi|254296871|ref|ZP_04964324.1| ribonuclease III [Burkholderia pseudomallei 406e] gi|126228100|gb|ABN91640.1| ribonuclease III [Burkholderia pseudomallei 1106a] gi|157808000|gb|EDO85170.1| ribonuclease III [Burkholderia pseudomallei 406e] gi|157938917|gb|EDO94587.1| ribonuclease III [Burkholderia pseudomallei Pasteur 52237] gi|169652460|gb|EDS85153.1| ribonuclease III [Burkholderia pseudomallei S13] gi|242141195|gb|EES27597.1| ribonuclease III [Burkholderia pseudomallei 1106b] Length = 467 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|126438815|ref|YP_001059800.1| ribonuclease III [Burkholderia pseudomallei 668] gi|126218308|gb|ABN81814.1| ribonuclease III [Burkholderia pseudomallei 668] Length = 467 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|76811515|ref|YP_334276.1| ribonuclease III [Burkholderia pseudomallei 1710b] gi|167739551|ref|ZP_02412325.1| ribonuclease III [Burkholderia pseudomallei 14] gi|254258167|ref|ZP_04949221.1| ribonuclease III [Burkholderia pseudomallei 1710a] gi|76580968|gb|ABA50443.1| ribonuclease III [Burkholderia pseudomallei 1710b] gi|254216856|gb|EET06240.1| ribonuclease III [Burkholderia pseudomallei 1710a] Length = 467 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|53725351|ref|YP_102339.1| ribonuclease III [Burkholderia mallei ATCC 23344] gi|121599423|ref|YP_993770.1| ribonuclease III [Burkholderia mallei SAVP1] gi|124385463|ref|YP_001028764.1| ribonuclease III [Burkholderia mallei NCTC 10229] gi|126450086|ref|YP_001081328.1| ribonuclease III [Burkholderia mallei NCTC 10247] gi|167000779|ref|ZP_02266586.1| ribonuclease III [Burkholderia mallei PRL-20] gi|238562760|ref|ZP_00439921.2| ribonuclease III [Burkholderia mallei GB8 horse 4] gi|254178423|ref|ZP_04885078.1| ribonuclease III [Burkholderia mallei ATCC 10399] gi|254199232|ref|ZP_04905598.1| ribonuclease III [Burkholderia mallei FMH] gi|254205539|ref|ZP_04911891.1| ribonuclease III [Burkholderia mallei JHU] gi|254357706|ref|ZP_04973979.1| ribonuclease III [Burkholderia mallei 2002721280] gi|52428774|gb|AAU49367.1| ribonuclease III/hypothetical protein, fusion [Burkholderia mallei ATCC 23344] gi|121228233|gb|ABM50751.1| ribonuclease III [Burkholderia mallei SAVP1] gi|124293483|gb|ABN02752.1| ribonuclease III/hypothetical protein [Burkholderia mallei NCTC 10229] gi|126242956|gb|ABO06049.1| ribonuclease III [Burkholderia mallei NCTC 10247] gi|147748828|gb|EDK55902.1| ribonuclease III [Burkholderia mallei FMH] gi|147752982|gb|EDK60047.1| ribonuclease III [Burkholderia mallei JHU] gi|148026833|gb|EDK84854.1| ribonuclease III [Burkholderia mallei 2002721280] gi|160699462|gb|EDP89432.1| ribonuclease III [Burkholderia mallei ATCC 10399] gi|238522001|gb|EEP85448.1| ribonuclease III [Burkholderia mallei GB8 horse 4] gi|243063329|gb|EES45515.1| ribonuclease III [Burkholderia mallei PRL-20] Length = 467 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|53720035|ref|YP_109021.1| ribonuclease III [Burkholderia pseudomallei K96243] gi|167816752|ref|ZP_02448432.1| ribonuclease III [Burkholderia pseudomallei 91] gi|167895244|ref|ZP_02482646.1| ribonuclease III [Burkholderia pseudomallei 7894] gi|167919873|ref|ZP_02506964.1| ribonuclease III [Burkholderia pseudomallei BCC215] gi|52210449|emb|CAH36432.1| ribonuclease III [Burkholderia pseudomallei K96243] Length = 467 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202 >gi|229818312|ref|ZP_04448593.1| hypothetical protein BIFANG_03612 [Bifidobacterium angulatum DSM 20098] gi|229784182|gb|EEP20296.1| hypothetical protein BIFANG_03612 [Bifidobacterium angulatum DSM 20098] Length = 246 Score = 103 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 92/212 (43%), Gaps = 7/212 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64 + L + +G + LL +ALTH S +H + + YERLEFLGD +L L+ + LF Sbjct: 24 NELLEALGTTIS-PDLLVQALTHRSFAHEHPGAKHYERLEFLGDAVLELISTETLFRLHP 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EGEL+ VS E S +AR +L + +I + + +SI D+VESLI Sbjct: 83 DMSEGELAKMRAKAVSEEALSAIARTKLHVEPYILLGHGEATQGGAQKSSILCDIVESLI 142 Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A +L+ GI+ A V + A + + G SG Sbjct: 143 GATFLEHGIDGARKVVHRLIDDTLAEVATEGPALDWKTSLTVKAHHLGKGEPVYHMAVSG 202 Query: 183 PDHDPRFTVVVEI--SGLAPAQGMDCSKRAAE 212 P++ FT V + G SKR A+ Sbjct: 203 PEYAQVFTARVSLGDDEEILGVGKGSSKRKAQ 234 >gi|186681704|ref|YP_001864900.1| ribonuclease III [Nostoc punctiforme PCC 73102] gi|186464156|gb|ACC79957.1| ribonuclease III [Nostoc punctiforme PCC 73102] Length = 239 Score = 103 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 107/221 (48%), Gaps = 8/221 (3%) Query: 5 RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + +L +++G + LL+ ALTH ++S +YE+LEF+GD ++ L+ + +L+ Sbjct: 11 QLESLVQKLGLSREAPIKWELLDLALTHPTVSD--SANYEQLEFVGDAVVRLVSAVVLWE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ G+ + + LVS +Q+AR L ++ V+ D + + Sbjct: 69 NYPDCPVGDFAAIRSVLVSDRILAQLARIYGLELYLLVAGSATADKVGQESRLADAFEAV 128 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L A +E+ +++D ++++ ++ R + K LQEW A+F V PEY+V Sbjct: 129 LGALYLSTQNLELIRSWLDPHFQELTTEIRLDPARLNYKAALQEWTQAQFKVLPEYRVVE 188 Query: 180 RSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + P H+ RF V + G +G S + AEQ AA Sbjct: 189 VTQPHHNQERFMAEVWLHGKKLGEGKGRSIKTAEQAAAKVA 229 >gi|302542233|ref|ZP_07294575.1| ribonuclease III [Streptomyces hygroscopicus ATCC 53653] gi|302459851|gb|EFL22944.1| ribonuclease III [Streptomyces himastatinicus ATCC 53653] Length = 312 Score = 103 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 4/204 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE R+GY +LL +ALTH S ++ + ERLEFLGD +LGL+++ L+ Sbjct: 37 LEGRLGYQLE-SALLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTLYRIHPDL 95 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ ++V++ ++V R LDL +FIR+ SI AD +E++I A+ Sbjct: 96 PEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 155 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 YLD G++ A V + + KS + A G+ + +GPDH Sbjct: 156 YLDRGLDAAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVSETGPDH 215 Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209 + FT + G+A G SK+ Sbjct: 216 EKTFTAAARVGGVAYGTGTGRSKK 239 >gi|332291744|ref|YP_004430353.1| Ribonuclease III [Krokinobacter diaphorus 4H-3-7-5] gi|332169830|gb|AEE19085.1| Ribonuclease III [Krokinobacter diaphorus 4H-3-7-5] Length = 245 Score = 103 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 6/211 (2%) Query: 12 RIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 IG+ EKA TH S+ + +YERLEFLGD +LG +I+ LFN Sbjct: 25 IIGFKPKEIKYYEKAFTHRSLGLKKADGNPLNYERLEFLGDAMLGSVIAAHLFNAVQGGN 84 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG L+ + +VS + +++ R+L+L ++R S L + ++ +V ++ Sbjct: 85 EGYLTKMRSKVVSRKHLNELGRDLNLVRYVRASIPLDNFGVNIHGNLFEALVGAIYLDRG 144 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 + V + + G+ ++ K T +++ +G D Sbjct: 145 YKYCEKFIAKRVIEPYVDIEKLEGRIISYKSVLIEWCQKEKR--TFKFETFEDTGQDTVK 202 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 F V + I G A+ SK+ AE++A+ Sbjct: 203 HFGVKLFIDGKVVAKARATSKKKAEEIASKR 233 >gi|189462275|ref|ZP_03011060.1| hypothetical protein BACCOP_02961 [Bacteroides coprocola DSM 17136] gi|189431014|gb|EDU99998.1| hypothetical protein BACCOP_02961 [Bacteroides coprocola DSM 17136] Length = 314 Score = 103 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 85/220 (38%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 K +G+ N + ++AL H S + ERLEFLGD IL +++ +++ F+ Sbjct: 23 FYKMLGFYPRNIEIYQQALLHKSSSIKAGKGRLLNNERLEFLGDAILDAIVADIVYKKFE 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET ++VA E+ L I+ ++ + ++ ++ Sbjct: 83 GKREGFLTNTRSKIVQRETLNRVAVEIGLDKLIKYTTRQSSHNSYMCGNAFEALIGAIYL 142 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + S K ++ KF V D Sbjct: 143 DRGYRACKKFMEERIINQYLNLEKISRKEVNFKSKLIEWSQKNKFCVEFNLIEQSLD-SD 201 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +P F + + + G SK+ ++Q AA L + Sbjct: 202 QNPIFETQITVENIPAGTGKGYSKKESQQEAAHATLTKIK 241 >gi|134295164|ref|YP_001118899.1| ribonuclease III [Burkholderia vietnamiensis G4] gi|134138321|gb|ABO54064.1| RNAse III [Burkholderia vietnamiensis G4] Length = 416 Score = 103 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|145593838|ref|YP_001158135.1| ribonuclease III [Salinispora tropica CNB-440] gi|145303175|gb|ABP53757.1| RNAse III [Salinispora tropica CNB-440] Length = 252 Score = 103 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 6/198 (3%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LLE+ALTH S ++ + ERLEFLGD +LG++I+T LF++ EG+L+ Sbjct: 23 DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDLPEGQLAKLRA 82 Query: 77 SLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S+V+ ++VAR L ++ + SI AD +E+L+ A+YL+ G+E Sbjct: 83 SVVNMRALAEVARGLGPTGLGPYLLLGKGEESTGGRDKASILADTLEALLGAIYLESGLE 142 Query: 134 VAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 T + + + A +G+ + A G+ +GPDH FT Sbjct: 143 TVATVIHRLFDPLMAESAGRGAALDWKTSLQELTAAQGLGVPEYRIEGTGPDHLKTFTAW 202 Query: 193 VEISGLAPAQGMDCSKRA 210 V ++G SK+ Sbjct: 203 VVVAGRRYGGAEGRSKKE 220 >gi|88801614|ref|ZP_01117142.1| putative ribonuclease III [Polaribacter irgensii 23-P] gi|88782272|gb|EAR13449.1| putative ribonuclease III [Polaribacter irgensii 23-P] Length = 245 Score = 103 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 6/217 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNH 62 L+K + ++ + + +KA TH S+ +YERLEFLGD ILG +IS L+ Sbjct: 20 DELKKLLKFSPTSINKYKKAFTHRSVQMIDRKGIPINYERLEFLGDSILGAVISAYLYKE 79 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 EG L+ + +VS E +++ ++L+L F++ + D + +I ++ ++ Sbjct: 80 APKGSEGYLTQMRSKIVSREHLNELGKDLNLIRFVKSNIDQANVGDNIHGNIFEALIGAI 139 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + + V + A GK ++ K + SG Sbjct: 140 YLDKGFNFCQKFIHQNVIAPYVDIAKLEGKITSYKGLIIEWCQKQK--KRYAFDAYEDSG 197 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + F+V + I G A+G SK+ AE+ A+ V Sbjct: 198 NETTKHFSVKISIDGQQIAKGRATSKKKAEEQASKRV 234 >gi|282855648|ref|ZP_06264959.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Pyramidobacter piscolens W5455] gi|282586496|gb|EFB91753.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Pyramidobacter piscolens W5455] Length = 253 Score = 103 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 83/220 (37%), Gaps = 11/220 (5%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 +L+KR GY F + LL A T S + + ERLEFLGD L LL+ L+ + Sbjct: 15 DSLQKRTGYQFRDPELLRLAFTQRSGAGGPNPSMNNERLEFLGDAALSLLVGEALYREYP 74 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A EG +++ + LV S E +RV + + D VE+ Sbjct: 75 EADEGFMTIERSKLVCGRNLSAWGYEAGFDQMLRVCDGVEVSDA-----MVEDSVEAAAG 129 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A +LDGG++ + + +G R + T R + Sbjct: 130 AFFLDGGLDAVRALLQSFSDYPDQGAGFDSRRHLERDCSYEKLG----APRYDTMRRRAN 185 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F V + G+ + AE+ AA + + R G Sbjct: 186 GKIIFESSVSLDKEPSGTGIGADRTEAERNAARDAMCRLG 225 >gi|270265300|ref|ZP_06193561.1| ribonuclease 3 [Serratia odorifera 4Rx13] gi|270040704|gb|EFA13807.1| ribonuclease 3 [Serratia odorifera 4Rx13] Length = 226 Score = 103 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQNVERLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|221201351|ref|ZP_03574390.1| ribonuclease III [Burkholderia multivorans CGD2M] gi|221208831|ref|ZP_03581829.1| ribonuclease III [Burkholderia multivorans CGD2] gi|221171287|gb|EEE03736.1| ribonuclease III [Burkholderia multivorans CGD2] gi|221178619|gb|EEE11027.1| ribonuclease III [Burkholderia multivorans CGD2M] Length = 406 Score = 103 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|221214088|ref|ZP_03587061.1| ribonuclease III [Burkholderia multivorans CGD1] gi|221166265|gb|EED98738.1| ribonuclease III [Burkholderia multivorans CGD1] Length = 402 Score = 103 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|161525340|ref|YP_001580352.1| ribonuclease III [Burkholderia multivorans ATCC 17616] gi|189349923|ref|YP_001945551.1| ribonuclease III [Burkholderia multivorans ATCC 17616] gi|160342769|gb|ABX15855.1| Ribonuclease III [Burkholderia multivorans ATCC 17616] gi|189333945|dbj|BAG43015.1| ribonuclease III [Burkholderia multivorans ATCC 17616] Length = 406 Score = 103 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|87301736|ref|ZP_01084576.1| putative ribonuclease III [Synechococcus sp. WH 5701] gi|87283953|gb|EAQ75907.1| putative ribonuclease III [Synechococcus sp. WH 5701] Length = 259 Score = 103 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 5/203 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +E+ALTHSS ++ERLEFLGD +L L + L H + G+ S LVS Sbjct: 45 IEEALTHSSAGRPI--NHERLEFLGDAVLRLAAAEFLERHHRAMDVGQRSALRAQLVSDR 102 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 +++ + + + + + D + T + G +E T++ + Sbjct: 103 WLAELGKRCGIEAMVHLGPVAAGDSAARQTIRAEICEALIGGLYETTGSLEPVHTWLTPH 162 Query: 143 WKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLA 199 W++ A + + +R + KT LQEW+ A+ P Y+ RS DPR F V++ G Sbjct: 163 WQRSAKELLADPYRHNWKTGLQEWSQAQGLGLPNYRCEERSRRHGDPRRFHCSVDLKGQP 222 Query: 200 PAQGMDCSKRAAEQVAAAEVLKR 222 +G S+R AEQ AA L++ Sbjct: 223 VGEGWGGSRRDAEQQAARSALEQ 245 >gi|162147937|ref|YP_001602398.1| ribonuclease III [Gluconacetobacter diazotrophicus PAl 5] gi|209542555|ref|YP_002274784.1| Ribonuclease III [Gluconacetobacter diazotrophicus PAl 5] gi|161786514|emb|CAP56096.1| putative ribonuclease III [Gluconacetobacter diazotrophicus PAl 5] gi|209530232|gb|ACI50169.1| Ribonuclease III [Gluconacetobacter diazotrophicus PAl 5] Length = 249 Score = 103 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 75/220 (34%), Positives = 113/220 (51%), Gaps = 17/220 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----------------SYERLEFLGDR 49 +++E R+GY F LL +ALTH S +H S ERLEF+GDR Sbjct: 13 VASVEARVGYRFRRPDLLREALTHRSAAHQRNGGGARRSRQPAARRGAGSNERLEFIGDR 72 Query: 50 ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 +LGL+++ L F +EG L R LVS + +A ++L + V+ + Sbjct: 73 VLGLVMAEWLLERFPDEQEGALGPRHAHLVSRPVLAAIAGTMNLQQALDVAEHEARAGVR 132 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 + ++ AD VE+++ A+YLDGG+E A FV W + + + +D KT LQEW A+ Sbjct: 133 QVANVLADAVEAILGAIYLDGGLEPARRFVRAAWNEAIVAQAQPPKDPKTALQEWVLARG 192 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 P Y+ GP H PRF + V +G + A+G+ SKR Sbjct: 193 LPLPAYRTVQMDGPSHAPRFVIAVTAAGQS-AEGIAGSKR 231 >gi|307069613|ref|YP_003878090.1| ribonuclease III [Candidatus Zinderia insecticola CARI] gi|306482873|gb|ADM89744.1| ribonuclease III [Candidatus Zinderia insecticola CARI] Length = 221 Score = 103 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 65/217 (29%), Positives = 104/217 (47%), Gaps = 6/217 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LEK + Y F N+SLL ALTHSS S+ + E+LEFLGD IL I+++LFN F + Sbjct: 3 KLEKILRYNFNNKSLLFLALTHSSYSNI---NNEKLEFLGDSILNTCITSILFNKFKNES 59 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG LS + LV E ++++++L +F+ + + K+ + SI + +E+L A+Y Sbjct: 60 EGFLSKFRSYLVRREKLYNISKKINLYNFLFLGNSEIKNSGNLKISILSSTLEALFGAIY 119 Query: 128 LDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 +D + + +D KT LQE P+Y++ + Sbjct: 120 IDSDFNTINNIIYKLYKFDINNFNIKYNIKDFKTLLQENLQKMKYFLPKYEIYKIYKLKN 179 Query: 186 DPRFTVVV-EISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F + + GM + AEQ+AA +LK Sbjct: 180 FQIFKIKCIFVEKNIITYGMAEKIKVAEQIAARFMLK 216 >gi|212695676|ref|ZP_03303804.1| hypothetical protein ANHYDRO_00193 [Anaerococcus hydrogenalis DSM 7454] gi|212677349|gb|EEB36956.1| hypothetical protein ANHYDRO_00193 [Anaerococcus hydrogenalis DSM 7454] Length = 228 Score = 103 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 60/198 (30%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 13 IGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+F N++L++ ALTHSS + + S ERLEFLGD IL L++S L+ + S E Sbjct: 18 IGYSFKNKNLIDVALTHSSYINESKDKNRSSNERLEFLGDSILDLVVSEELYKNHKSYPE 77 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+L+ + +V + S+ + + +L+S++ S++AD E+ AA+YL Sbjct: 78 GKLTKIRSRIVCTSSFSKASEKFNLSSYLLFGKGEISHNGREKKSVKADTFEAFCAAIYL 137 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 D G F+ + + Q + + D KT+LQE+ + +YK+ GP+H Sbjct: 138 DAGYVFLKNFLMENYYQTVKELLENDLLFIDYKTKLQEYFNKTNRTILKYKLAKEEGPEH 197 Query: 186 DPRFTVVVEISGLAPAQG 203 + F + V + G Sbjct: 198 NKTFYMDVYAKNKKLSTG 215 >gi|332885395|gb|EGK05644.1| hypothetical protein HMPREF9456_02446 [Dysgonomonas mossii DSM 22836] Length = 290 Score = 103 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y + K G+ N +L E+AL H S S ++ + ERLEFLGD IL +++ ++F Sbjct: 20 YVSFYKIFGFYPYNITLYEQALLHKSSSIKLKDGKWINNERLEFLGDAILDAIVADIVFK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F+ KEG L+ + +V ET +++A EL + I+ S+ + ++ + Sbjct: 80 EFEYKKEGFLTNMRSKIVQRETLNKLALELGIDKLIKTSARNTTPNTHMYGNALEALIGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + + + K + + + K+ L EW+ + V Sbjct: 140 IYLDQGYRVSKKFVLERLIKEHLNIDTVA-EQEANYKSRLIEWSQKQKISVSFDLVDSFV 198 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ P F V I G G SK+ ++Q AA E + Sbjct: 199 DENNTPIFKTAVVILGEQAGLGTGYSKKESQQKAAKEAFNKL 240 >gi|325859734|ref|ZP_08172864.1| ribonuclease III [Prevotella denticola CRIS 18C-A] gi|327312785|ref|YP_004328222.1| ribonuclease III [Prevotella denticola F0289] gi|325482660|gb|EGC85663.1| ribonuclease III [Prevotella denticola CRIS 18C-A] gi|326945209|gb|AEA21094.1| ribonuclease III [Prevotella denticola F0289] Length = 356 Score = 103 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y +L + IG + + + AL H S++ + + ERLEFLGD IL ++ +++ Sbjct: 20 YLSLYQIIGIIPHDITYYKTALLHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + +V +T +++A+E+ + I + + +V + Sbjct: 80 HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGINQLILSNGHSSSHNSYLGGNAFEALVGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 L + ++ T + + K K++L EW+ + + Sbjct: 140 LYLDHGYNACMKFMKTQILGELINIDKVAYKEVNF-KSKLIEWSQKNKVKMEFKLIENQK 198 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P F V + GL +G SK+ ++Q A+ L+R Sbjct: 199 DKQGSPTFYFQVLMEGLPCGEGRGYSKKESQQEASKLTLQRL 240 >gi|254452330|ref|ZP_05065767.1| ribonuclease III [Octadecabacter antarcticus 238] gi|198266736|gb|EDY91006.1| ribonuclease III [Octadecabacter antarcticus 238] Length = 197 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 78/191 (40%), Positives = 108/191 (56%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 +S ++ +RLEFLGDR+LGL++S L +A EG L+ RFN+LV ETC+ VAR++ Sbjct: 1 MSTPNRDDNQRLEFLGDRVLGLVMSEALLQADVNAPEGLLAPRFNALVRKETCADVARQI 60 Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 DL + +++ ++ AD +E++IAA+Y+D G +VA V W R Sbjct: 61 DLGAVLKLGRSEMLTGGRRKEALLADAMEAVIAAVYIDAGFDVARERVVALWGDRISNVE 120 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 + RD KT LQEWA + P Y T RSGPDH P FT+ V + A SKR A Sbjct: 121 EDARDPKTALQEWAQGQGEPPPSYIETARSGPDHAPIFTIEVRLHSGATDTATAPSKRQA 180 Query: 212 EQVAAAEVLKR 222 EQ AA +L R Sbjct: 181 EQAAAKSLLDR 191 >gi|116074432|ref|ZP_01471694.1| putative ribonuclease III [Synechococcus sp. RS9916] gi|116069737|gb|EAU75489.1| putative ribonuclease III [Synechococcus sp. RS9916] Length = 247 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 5/206 (2%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +L+++ALTH+S ++ERLEFLGD +L L S + H GE S LVS Sbjct: 40 ALVDEALTHTSTGRHI--NHERLEFLGDAVLRLAASEYIEQHHPQLPVGERSALRAQLVS 97 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + + + + + + + R D + T + A G IE +++ Sbjct: 98 DRWLAALGDSIGIEAVQTIGAKARGDDAARATLRAEATEALIGALYQGWGSIEPVHSWLT 157 Query: 141 KYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISG 197 +W++ + + +AK+ LQEW+ A+ P Y +S DP RF VE+ G Sbjct: 158 PHWQRTSAAVLADPHKGNAKSALQEWSQARKLGLPTYCSEEQSQRHGDPKRFRCQVELQG 217 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKRE 223 A+G S+R AEQ AA L+ Sbjct: 218 KTLAEGWGGSRRDAEQRAAQAALQSL 243 >gi|302815180|ref|XP_002989272.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii] gi|300143015|gb|EFJ09710.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii] Length = 524 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 86/246 (34%), Gaps = 30/246 (12%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLF 60 +++ + LE +GY+F +R+LL +ALTHSS + YERLEF+GD +L L++ ++ Sbjct: 191 NSIDFEGLENTLGYSFGSRNLLAQALTHSSSRQASMVPIYERLEFIGDAVLDHLLTRHIY 250 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + G L+ + +++E+ ++ + L + I S+ ++ E Sbjct: 251 FSYKDLHPGRLTDLRCAALNSESFARAMVKHKLHAHILHESNDFHSQIKTYAKHALNMEE 310 Query: 121 SLIA-----------------------ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + I G V + Q + Sbjct: 311 NAIYSYGFGAVKAPKVLGDVFQSLVGALYIDSGLNLDQVWKVFEPLLQPLVTPEAVPIHP 370 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 EL E F + +G + K+ A+++AA Sbjct: 371 VRELYELCDKHMKKLEWDYSLSGD------LFLARALVGNKVLGRGTNVQKKMAKKLAAI 424 Query: 218 EVLKRE 223 + + Sbjct: 425 NAIAKL 430 Score = 45.7 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 10/145 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M A++ K I Y +L +ALT ++ Y YER+E LGD L +ST L+ Sbjct: 26 MQAIQLR---KAINYNIPASKIL-EALTAANCHEPY--CYERIELLGDAYLKWAVSTRLY 79 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT----SIQA 116 F EGEL++ ++S +A E L +++R++ + + + + A Sbjct: 80 LKFSDFPEGELTITRGKIISNSALHYLALEKGLETYVRINPFVPGREPTDLQELSSKVLA 139 Query: 117 DVVESLIAALYLDGGIEVAGTFVDK 141 +VVE+LI A Y+ G + A V+ Sbjct: 140 NVVEALIGAYYVHHGDKGARHVVEW 164 >gi|110637800|ref|YP_678007.1| ribonuclease III [Cytophaga hutchinsonii ATCC 33406] gi|110280481|gb|ABG58667.1| RNAse III [Cytophaga hutchinsonii ATCC 33406] Length = 247 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 102/229 (44%), Gaps = 13/229 (5%) Query: 7 STLEKRIGYA----FANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTL 58 L ++I Y N L + A+ H+S + +ESYERLE+LGD ILG +++ Sbjct: 21 KILAQKIRYVTGMWPGNLHLYQMAIVHTSAADENESGVKESYERLEYLGDSILGAVVAEY 80 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF F EG L+ + +V+ E +QV ++L L+ + + K S+ DV Sbjct: 81 LFKRFPFKDEGFLTEIRSRIVNREILNQVGKDLGLSDIVVFNGSKGKQGHK---SLYGDV 137 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE--YK 176 VE+++ A+YLD G E A FV K + ++ K + + Sbjct: 138 VEAIVGAVYLDKGFENAKKFVLKKIVSSQIDVDAIIQNNKNFKSILLEWCQKENKKLEFV 197 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + SG H F V ++ + QG+ SK+ AEQ AA + Sbjct: 198 IIEESGHRHQKVFKAEVRVADESKGQGIGFSKKKAEQNAAEIACIELDL 246 >gi|193216954|ref|YP_002000196.1| ribonuclease III [Mycoplasma arthritidis 158L3-1] gi|193002277|gb|ACF07492.1| ribonuclease III [Mycoplasma arthritidis 158L3-1] Length = 222 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 5/210 (2%) Query: 16 AFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 + K+LTH S S ++ +YE LEFLGD +L S +F +F EGE + Sbjct: 11 KIRRPEFVFKSLTHKSFDQSDHFKFNYEYLEFLGDAVLEFYTSDRIFQNFPKYTEGEATR 70 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 +VS E +++A ++ L R + +++ + S + G Sbjct: 71 HRQMIVSNENLAKIAHKIGLVEIARFGKKVFEEIKNIPNSKVFSDMFESFIGALYFGLGI 130 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 ++ + +D K+ QE A ++ VT ++ F + Sbjct: 131 GPTFQYLDSVLLDSVLNVIDSKDPKSYFQEIIQANGNLSRLRYVTV---AQNNGEFKSEL 187 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + G SK+ AE+ AA LK+ Sbjct: 188 LVDQKVFGVGYGHSKKQAEKAAAISALKKM 217 >gi|321475108|gb|EFX86072.1| hypothetical protein DAPPUDRAFT_309030 [Daphnia pulex] Length = 1607 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 91/254 (35%), Gaps = 39/254 (15%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EKR+ Y F N++LL +ALTH+S + Y+RLEFLGD +L L++ +++ Sbjct: 1348 LESFEKRLRYTFKNKALLIEALTHASYIPNRITNCYQRLEFLGDAVLDYLVTRYYYDNPC 1407 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99 L+ +++V+ ET + +A + +++ Sbjct: 1408 QYTPAILTDLRSAMVNNETFAVMAVQNRFHLYLKHLSLSLNVILDRFVRSQEENGHLLMH 1467 Query: 100 ---------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 + + D+ ES+ A+++D G+ + + Sbjct: 1468 NYFVLEETSEPHQSLASNIDVPKVLGDIFESVAGAIFVDSGMSLDAVWKSYLPFLHDALE 1527 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + + L+ K + D R V +EI G +G + + Sbjct: 1528 KFNEKIPISALRVLHERYPNALKFRKSESLA----DGRLCVAIEIQGTRVFKGAGGNSKT 1583 Query: 211 AEQVAAAEVLKREG 224 A+ AA L Sbjct: 1584 AKSAAAKYALSVLN 1597 >gi|91784707|ref|YP_559913.1| ribonuclease III [Burkholderia xenovorans LB400] gi|91688661|gb|ABE31861.1| RNAse III [Burkholderia xenovorans LB400] Length = 428 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A T + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLEVKVSGSG 202 >gi|325091272|gb|EGC44582.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H88] Length = 1432 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 77/232 (33%), Gaps = 15/232 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + R+GY F LL A TH+S ++ Y+RLEFLGD +L ++ L++H+ Sbjct: 1170 KQIGNRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYP 1229 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 L+ ++VS + V +L L + S+ + V Sbjct: 1230 DRDPQWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESAD 1289 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + + ++++ E + + + Sbjct: 1290 SPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQYFEDMSIYDAFAN 1349 Query: 185 HDP-------------RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P R V + AQG+ S R A+ A+ L + Sbjct: 1350 KHPTAGEVQMVDSTETRIYAAVIVHDKFVAQGIASSVRYAKTKASEAALAKL 1401 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 12/92 (13%) Query: 21 SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +ALT H ++YERLEFLGD L + S LF E Sbjct: 976 HLALEALTKDSDNTEEHRKEQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDE 1035 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 + V+ L+ + A L L F+R Sbjct: 1036 FDFHVKRMCLICNQNLFNTAVRLKLYEFVRTQ 1067 >gi|301167246|emb|CBW26828.1| Ribonuclease III (RNase III) [Bacteriovorax marinus SJ] Length = 261 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 8/224 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHF 63 L++ I + F N +LL +ALTHSS H ++SYERLEFLGD +L L+I+ LL F Sbjct: 27 NLQRNISHKFKNMALLYEALTHSSFGHECFGDSKKSYERLEFLGDSVLDLIITDLLQEKF 86 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG+LS SLV+ + ++A L++ + V K + +SI +DV E+++ Sbjct: 87 PAMVEGKLSKLRASLVNEVSLKELASSLEIERAVLVGKGELKAQGNLKSSILSDVFEAVL 146 Query: 124 AALYLDGGIEVAGTFVDKYWKQRA----LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 A+Y D +EV+ + +R + + + + + Sbjct: 147 GAIYKDSSLEVSKKSFISIIENYEKLSGQIYLDEKRLQEFDSKSRLQEMTMSLFKTLPKY 206 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + F V + +G SK+ EQ A ++ + Sbjct: 207 SAKELSNGNFEVEASVLDKFLEKGEFSSKKKGEQKLAKNIIIKI 250 >gi|225561826|gb|EEH10106.1| dicer-like protein [Ajellomyces capsulatus G186AR] Length = 1502 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 15/232 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + R+GY F LL A TH+S ++ Y+RLEFLGD +L ++ L++H+ Sbjct: 1240 KQIGNRLGYYFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEHLYHHYP 1299 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 L+ ++VS + VA +L L + S+ + V Sbjct: 1300 DRDPQWLTEHKMAMVSNKFLGAVAVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESAD 1359 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + + ++++ E + + + Sbjct: 1360 SPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQYFEDMSIYDAFAN 1419 Query: 185 H-------------DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +PR V + AQG+ S R A+ A+ L + Sbjct: 1420 KHPTAGEVQMVDSTEPRIYAAVIVHDKFVAQGIASSVRYAKTKASEAALAKL 1471 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 12/92 (13%) Query: 21 SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +ALT H ++YERLEFLGD L + S LF E Sbjct: 1046 HLALEALTKDSDNTEEHRKEQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDE 1105 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 + V+ L+ + A L L F+R Sbjct: 1106 FDFHVKRMCLICNQNLFNTAVRLKLYEFVRTQ 1137 >gi|194333018|ref|YP_002014878.1| Ribonuclease III [Prosthecochloris aestuarii DSM 271] gi|194310836|gb|ACF45231.1| Ribonuclease III [Prosthecochloris aestuarii DSM 271] Length = 277 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 10/203 (4%) Query: 21 SLLEKALTHSSISHSYQ--------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 + + A TH S H +S +RLEFLGD +L L+IS L+ F + EG LS Sbjct: 56 DIYKTAFTHRSFVHDQHQGSSPAPFDSNQRLEFLGDAVLDLIISEHLYKLFPESDEGALS 115 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + +V+ ++ + A+ + L + + + ++ + AD E+LI A+YLD G+ Sbjct: 116 STRSKIVNRKSLADFAQAIALGNQLIIGESADEEKIRKSEATMADAFEALIGAIYLDKGL 175 Query: 133 EVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 F+D + + K+ L E+A A P+Y + G +H FT Sbjct: 176 PAVQRFIDDHVMTIVDVPKLATIEHNHKSRLIEFAQANQLSHPQYTIIREEGAEHQKTFT 235 Query: 191 VVVEISGLAPAQGMDCSKRAAEQ 213 V V G G K+ AEQ Sbjct: 236 VEVSFDGKPFGTGTAARKKDAEQ 258 >gi|322834127|ref|YP_004214154.1| ribonuclease III [Rahnella sp. Y9602] gi|321169328|gb|ADW75027.1| ribonuclease III [Rahnella sp. Y9602] Length = 226 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVEKLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNQPVVGTGSSRRK 210 >gi|260910581|ref|ZP_05917245.1| ribonuclease 3 [Prevotella sp. oral taxon 472 str. F0295] gi|260635280|gb|EEX53306.1| ribonuclease 3 [Prevotella sp. oral taxon 472 str. F0295] Length = 473 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 YS+L + +G+ N + AL H S+ ++ + ERLEFLGD IL ++ +++ Sbjct: 20 YSSLFEILGFYPRNIGYYKLALMHKSVMRRGANGKPVNNERLEFLGDAILDAIVGDIVYR 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV ET +++A+E+ ++ I S + +V + Sbjct: 80 HFPGKREGFLTNTRSKLVQRETLNRLAQEMGISRLILSSGHSSSHNSYMGGNAFEALVGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + + + + K K++L EW+ Sbjct: 140 IYLDRGYASCMRFMEKRILTKMINIDKVAYKEVNF-KSKLIEWSQKNRVKLDFIVKEQGK 198 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + P F VE+ G+ +G SK+ ++Q+A+ L+R Sbjct: 199 DKNGSPFFLFCVELEGIEGCKGRGYSKKESQQLASKLTLERLK 241 >gi|167948160|ref|ZP_02535234.1| ribonuclease III [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 225 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 72/205 (35%), Positives = 106/205 (51%), Gaps = 6/205 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S+L + +GY F N +LL++ALTH S+ ++ ER EFLGD ILG +I+ LF F+ Sbjct: 5 LSSLCRALGYEFHNPALLQQALTHRSVG---GKNNERFEFLGDAILGFVIADALFEQFER 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EG+LS +SLV ET +++AR L L +R+ + SI AD VE+++AA Sbjct: 62 ASEGQLSRLRSSLVKRETLAKIARGLKLGDHLRLGPGELRSGGQTRDSILADAVEAILAA 121 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLD + + ++ L ++D KT LQE A+ P Y+V +G Sbjct: 122 IYLDSDYSTTRRVILQIFESLLTGLDLNTQQKDPKTRLQEHLQARKIGLPSYQVIDITGD 181 Query: 184 DHDPRFTVVVEISGLA-PAQGMDCS 207 H FTV L + G S Sbjct: 182 QHAQTFTVKCRSEALEQESDGSGSS 206 >gi|242033791|ref|XP_002464290.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor] gi|241918144|gb|EER91288.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor] Length = 1385 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 82/243 (33%), Gaps = 20/243 (8%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLF 60 + + +LE + Y F++ SLL +ALTH S Y+RLEFLGD +L + + + Sbjct: 1128 NFINLRSLELMLDYNFSDPSLLLEALTHGSYQIAGTTACYQRLEFLGDAVLDHIFTDYFY 1187 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-------TS 113 + + L+ ++ V+ + A + L I SS + S Sbjct: 1188 HQYPECTPELLTDLRSASVNNSCYAHAAVKAGLHKHILHSSSALHKKMADYLDKFEQSFS 1247 Query: 114 IQADVVESLIAA---------LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW 164 + E+ I W++ E+ Sbjct: 1248 GPSHGWEAGICLPKVLGDVIESIAGAIYIDTKNDKKVVWRKMKRLLEPLATPDTLEIDPV 1307 Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI--SGLAP-AQGMDCSKRAAEQVAAAEVLK 221 P+ + D +V VE+ G A +KR A+++AA VLK Sbjct: 1308 KELHEFCDPKTCSIKYTVAREDRVTSVAVEVQTKGTTYKATRTGLTKRDAKKLAAKSVLK 1367 Query: 222 REG 224 Sbjct: 1368 DMK 1370 >gi|288928881|ref|ZP_06422727.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella sp. oral taxon 317 str. F0108] gi|288329865|gb|EFC68450.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella sp. oral taxon 317 str. F0108] Length = 459 Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 YS+L + +G+ N S + AL H S+ ++ + ERLEFLGD IL ++ +++ Sbjct: 20 YSSLFEILGFYPRNISYYKLALMHKSVMRRGANGKPVNNERLEFLGDAILDAIVGDIVYR 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + LV ET +++A+E+ ++ I S + +V + Sbjct: 80 HFPGKREGFLTNTRSKLVQRETLNRLAQEMGISRLILSSGHTSSHNSYMGGNAFEALVGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + + + + K K++L EW+ Sbjct: 140 IYLDRGYSSCMRFMEKRILAKMINIDKVAYKEVNF-KSKLIEWSQKNRVKLDFIVKEQGK 198 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + P F V + G+ G SK+ ++Q+A+ L+R Sbjct: 199 DKNGSPFFLFCVHLEGVEGCNGRGYSKKESQQLASKLTLERLK 241 >gi|240047461|ref|YP_002960849.1| Ribonuclease III [Mycoplasma conjunctivae HRC/581] gi|239985033|emb|CAT05026.1| Ribonuclease III [Mycoplasma conjunctivae] Length = 228 Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 9/224 (4%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLF 60 + + L ++ N + +ALTH S + YE LEFLGD I+ +S +F Sbjct: 6 SYQILKLLDKLEILPKNLEIYNQALTHKSYQHFNPNSSHYEMLEFLGDSIINFKVSEFIF 65 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + KEG+ S +S+ T +++ +L L+ I+V + + + ADV E Sbjct: 66 SKINFQKEGQASQLRAKSISSLTFAKICDDLQLSDLIQVGKGAKDILTNTKLK--ADVFE 123 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 S AA+YLD G EV F++KY +++ +D K+E QE + Y+ T Sbjct: 124 SFCAAIYLDQGNEVLDLFLEKYLYDFVIQNAKHNNKDPKSEFQEKIQSFSTEKITYQSTK 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +S D F + G S + AE AA + L+R Sbjct: 184 QS----DGSFQSELIWDNQIFGVGSGKSMKEAEFNAARQALERM 223 >gi|311977725|ref|YP_003986845.1| probable ribonuclease 3 [Acanthamoeba polyphaga mimivirus] gi|82000280|sp|Q5UQT7|RNC_MIMIV RecName: Full=Probable ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|55416962|gb|AAV50612.1| RNAse III (dsRNA binding motif) [Acanthamoeba polyphaga mimivirus] gi|308204768|gb|ADO18569.1| probable ribonuclease 3 [Acanthamoeba polyphaga mimivirus] Length = 538 Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 19/223 (8%) Query: 19 NRSLLEKALTHSSI-----------------SHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +A+TH S ++S ERL+FLGD ++ +I LFN Sbjct: 312 DLKLFYEAMTHRSYLIRKNLPNRDVPKSKSIVRLQKKSNERLQFLGDAVIHFIIGEYLFN 371 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + EG L+ L ++E+ +A++ D++S++ +S ++ +I +E+ Sbjct: 372 KYADSGEGYLTRLRCKLENSESLFFLAKQSDISSYLLISQNIEVLHGRENVNIIGGGLEA 431 Query: 122 LIAALYLDGG--IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + ALYL+ G + + + + K + + + P YK+ Sbjct: 432 FVGALYLNIGLGTVKQFLLEIMRIELDINQIAENETNYKDLILQLYNKNKWGHPVYKILK 491 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GPDH FT+ + + G SK+ AEQ+A+ ++ + Sbjct: 492 EEGPDHCKIFTMGLYLGNKLMGIGKASSKKKAEQIASKKMYQN 534 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 12/214 (5%) Query: 19 NRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 + + E+A+ H S + ++YERLE+LGD I ++I+ ++ ++ EG L+ Sbjct: 42 DMHIFEEAMLHVSTIYEESDKTYERLEYLGDAIFHMIITEYFYHRYNEENEGFLTRLRIR 101 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 + ++ ++++ L L +F+++ S I D+ ES I A YL+ G++ Sbjct: 102 IERGDSMVELSKNLGLNNFVQIY------GISLNDHILEDIFESFIGAFYLNFGMKYTRL 155 Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDPR--FTVVV 193 F+ K ++ S D + + K P ++ R F V Sbjct: 156 FIIKLIEKHKNLSELIAYDDNYKDLLLRYFHQMKWGHPKYIEEIVIDPKNNQRNKFISKV 215 Query: 194 EIS-GLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 + G +K+ +EQ+A+ L G+ Sbjct: 216 KNPFDKVIGIGSASTKKKSEQLASQMALTNLGVI 249 >gi|312795542|ref|YP_004028464.1| ribonuclease III [Burkholderia rhizoxinica HKI 454] gi|312167317|emb|CBW74320.1| Ribonuclease III (EC 3.1.26.3) [Burkholderia rhizoxinica HKI 454] Length = 408 Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 8/206 (3%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ S LE R+ Y F N LL +A+TH S S ++ ERLEFLGD +L +++ LLF Sbjct: 18 SMPLSPLESRLHYEFRNAELLRQAMTHRSHSATH---NERLEFLGDSVLNCVVAALLFQR 74 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG+LS +LV ++ ++A+ L++A +R+ + SI AD E++ Sbjct: 75 FGKLDEGDLSRVRANLVKQQSLYEIAQALNIAEALRLGEGELRSGGFRRPSILADTFEAV 134 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180 + A++LDGG + A T + + + +DAKT LQE+ P Y V Sbjct: 135 LGAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPSYAVIAT 194 Query: 181 SGPDHDPRFTVVVEISG---LAPAQG 203 +G H+ +F V + G Sbjct: 195 TGAAHNQQFEVECTVPKLEVKVFGTG 220 >gi|288923504|ref|ZP_06417623.1| ribonuclease III [Frankia sp. EUN1f] gi|288345162|gb|EFC79572.1| ribonuclease III [Frankia sp. EUN1f] Length = 281 Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 11/214 (5%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL++ALTH S ++ + ERLEFLGD +LGL+++ LF EG+L+ + Sbjct: 23 DPELLDRALTHRSYAYENGGLPTNERLEFLGDAVLGLIVTAALFRRHPDLPEGQLAKQRA 82 Query: 77 SLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S+V+ + VAR + ++ + SI AD +E++I A+YL ++ Sbjct: 83 SVVNMRALADVARRIGPTGIGPYLLLGRGEEATGGRDKPSILADTLEAVIGAVYLSNSLD 142 Query: 134 VAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 VA FV + + D KT LQE P+Y VT GPDH RFT Sbjct: 143 VASGFVHRLFDPLLDEAAGRGAGLDWKTSLQEQTALLGLGPPDYVVTEA-GPDHAKRFTA 201 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAA---EVLKR 222 ++G +G SK+ AEQ AAA +L++ Sbjct: 202 FARVAGEVLGEGEGGSKKEAEQRAAATAFAMLEK 235 >gi|312599268|gb|ADQ91291.1| hypothetical protein BpV2_124 [Bathycoccus sp. RCC1105 virus BpV2] Length = 242 Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 97/218 (44%), Gaps = 4/218 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLF 60 + ++E +G N L +KA H SI + S+E LEF+GD +LG +I+ LF Sbjct: 3 IDRQSVELLVGTKLTNLDLYQKAFRHKSILKEDESLDGSFETLEFIGDSVLGFVITKFLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + +++ +EG L+ LV ET + +A +L L +++++ ++ I DV E Sbjct: 63 DRYENRQEGFLTKARTKLVRGETLADIATKLGLYNWVQMDEKGMRNEWFKNPKILEDVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +L+ A+Y+D G+ A F+ + + ++ +R Sbjct: 123 ALVGAIYMDLGLLHAKQFILNIYTNPEYVNMNSIMVD-DNFKDHLMRHCQTNNLSLPEYR 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + F + V + + +G +K+ AEQ AA Sbjct: 182 VLNHENGIFYIDVYVDNVFLGRGHAKNKKQAEQHAAKR 219 >gi|296158234|ref|ZP_06841066.1| ribonuclease III [Burkholderia sp. Ch1-1] gi|295891570|gb|EFG71356.1| ribonuclease III [Burkholderia sp. Ch1-1] Length = 416 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A T + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|227538735|ref|ZP_03968784.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33300] gi|227241244|gb|EEI91259.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33300] Length = 229 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 7/225 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHF 63 L+ +G+ N L + A H S++ + S ERLEFLGD ILG +++ LLF + Sbjct: 3 KLKNLLGFVPENVRLYQMAFRHKSVATAIKEGAKNSNERLEFLGDAILGSVVAELLFKKY 62 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG L+ + +VS +Q++R+L L I+ + + S+ D E+L+ Sbjct: 63 PYKDEGFLTEMRSKIVSRANLNQLSRKLGLNELIQYDARMISFPNK-QGSLLGDAFEALV 121 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YLD G +F+ + + + + + + P Sbjct: 122 GAVYLDKGYAFTKSFLLNRIIKTHVDIQLLEVTETNFKSRLIEWCQHLGKDVQFLPTANP 181 Query: 184 DHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 + + F++ + G G D +K++AE++AA + + I+ Sbjct: 182 EGESSKMFSIEAIVEGEVCGIGRDFNKKSAEKLAAEKACEYLKIF 226 >gi|39939094|ref|NP_950860.1| dsRNA-specific ribonuclease [Onion yellows phytoplasma OY-M] gi|81402281|sp|Q6YPW7|RNC_ONYPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|39722203|dbj|BAD04693.1| dsRNA-specific ribonuclease [Onion yellows phytoplasma OY-M] Length = 238 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 9/210 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57 M ++ TL + + N +L ++ALTHSS S+ E ERLEFLGD I+GLL++ Sbjct: 1 MKNIQ--TLFQTLNITPQNLTLYKQALTHSSYSNEQNPPQEDNERLEFLGDAIVGLLMAD 58 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ EG ++ + V + + A ++L +++ + + + SI AD Sbjct: 59 YLY-SQSKEDEGIMTKKRAQAVCERSLTIYAHNIELQNYLLLGKGEK-NKDFNAKSIIAD 116 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+L A+YLD G A K+ + T +YK+ Sbjct: 117 TFEALFGAIYLDLGYLTAKKVFHNIVLPHLAKTIYIIDFKTQ--LQEIVQSEKKTIQYKI 174 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 GP H F V + G + Sbjct: 175 VQEQGPAHSKNFVAEVYLEKNLLGTGEGST 204 >gi|260436673|ref|ZP_05790643.1| ribonuclease III [Synechococcus sp. WH 8109] gi|260414547|gb|EEX07843.1| ribonuclease III [Synechococcus sp. WH 8109] Length = 241 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 52/213 (24%), Positives = 69/213 (32%), Gaps = 12/213 (5%) Query: 19 NRSLLE---KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 N LL +ALTH S + ERLEFLGD +L L + + G S Sbjct: 23 NPELLALVDQALTHVS--SGRTRNLERLEFLGDAVLRLAATEFIDRDHTDLAVGACSNLR 80 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 LVS + V LD+ + S + V Sbjct: 81 AQLVSDRWLADVGSALDIEQHLL--VGRHAQGDRSAQSRLRADATEALIGALYSALGNVE 138 Query: 136 GTFVDKYWKQRALKS----GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFT 190 A + + KT LQEW+ + P Y S DP RF Sbjct: 139 AIHRWLTPHWCATAQAVLTNPHQFNGKTTLQEWSQGQGLGLPNYATEECSRQHGDPERFR 198 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V I A+ S++ AEQ AA L+ Sbjct: 199 CRVSIQDRELAEAKGRSRKEAEQNAATAALQAL 231 >gi|103486701|ref|YP_616262.1| ribonuclease III [Sphingopyxis alaskensis RB2256] gi|123253313|sp|Q1GTU3|RNC_SPHAL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|98976778|gb|ABF52929.1| RNAse III [Sphingopyxis alaskensis RB2256] Length = 226 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 83/207 (40%), Positives = 115/207 (55%), Gaps = 3/207 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 L L IG + +L + ALTH S + + Y+RLEFLGDR+LGL++++ L+ Sbjct: 3 DPLNTEALADIIGCIPDDLTLYDLALTHGS---TGRADYQRLEFLGDRVLGLVLASELYT 59 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F +A EGE+S R + L S TC+ +A+ LDL + IR + R D +I AD +E+ Sbjct: 60 RFPAASEGEMSSRLHVLASGATCAAIAQRLDLPALIRFGAQARSDGGRHSDNIAADAIEA 119 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LI AL+L+ GIE A TF+ W + K LQEWA A+ PEY++ R Sbjct: 120 LIGALFLERGIEAARTFILAQWGALIDGQQAAPKHPKAALQEWALARGRRPPEYEIVSRE 179 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSK 208 GPDH PRF + V I LA A+ SK Sbjct: 180 GPDHAPRFRIAVSIGKLARAEAQGASK 206 >gi|157371904|ref|YP_001479893.1| ribonuclease III [Serratia proteamaculans 568] gi|189043344|sp|A8GI25|RNC_SERP5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|157323668|gb|ABV42765.1| Ribonuclease III [Serratia proteamaculans 568] Length = 226 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ LF Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ RE DL +R+ K SI AD VE Sbjct: 58 QRFPRVDEGDMSRMRATLVRGNTLAEMGREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIQTVERLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210 >gi|238499729|ref|XP_002381099.1| dicer-1, putative [Aspergillus flavus NRRL3357] gi|220692852|gb|EED49198.1| dicer-1, putative [Aspergillus flavus NRRL3357] Length = 605 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 87/254 (34%), Gaps = 37/254 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65 +E+++GY F LL A TH S ++ + Y+RLEFLGD +L ++ LF + Sbjct: 325 KVEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPD 384 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---------------------- 103 L+ ++ S + +A +L L + +R S+ Sbjct: 385 KDPQWLTEHKMAMASNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENESQGA 444 Query: 104 --RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 V D+VE+ + A ++D + ++ D Sbjct: 445 VDYWLVTKDPPKCLPDMVEAYLGAAFVDSDFQFRVVEDFFQRHVKSYFHDMTIYDTFANK 504 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFT--------VVVEISGLAPAQGMDCSKRAAEQ 213 + +T EY T + V + + A+G S R A+ Sbjct: 505 HPTTFLQNRLTNEYGCTNYCLKAGEIPVVDGGTVSVLAAVIVHEVVIAEGTASSGRYAKV 564 Query: 214 VAAAEV---LKREG 224 A+ + L+ G Sbjct: 565 KASEKALSVLENMG 578 Score = 42.6 bits (98), Expect = 0.037, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 32/115 (27%), Gaps = 21/115 (18%) Query: 20 RSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 + +A T H + ++YERLEFLGD L + S LF Sbjct: 127 PAYALEAFTKDSDNTEEHRVQQIHVQRGMGKNYERLEFLGDCFLKMATSISLFVQNPDDD 186 Query: 68 EGELSVRFNSLVSAET---------CSQVARELDLASFIRVSSDLRKDVCSFMTS 113 E + V L+ + Q R + L Sbjct: 187 EFDFHVNRMCLICNKNLFNTALKKELYQYIRSRGFSRHTWYPDGLTLLHGRDHRK 241 >gi|328716579|ref|XP_001944314.2| PREDICTED: endoribonuclease Dcr-1-like isoform 1 [Acyrthosiphon pisum] Length = 1609 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 91/246 (36%), Gaps = 35/246 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + E+ +GY F +RS L +A+TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1357 FESFEQHLGYHFQDRSYLLQAMTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 1416 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99 G L+ ++LV+ + +A + + Sbjct: 1417 QHSPGALTDLRSALVNNTIFASLAVRNGFHKYFKHLSPGLSDVVCRFVTIQEENGHTIDE 1476 Query: 100 ------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 D + + DV ES+ A+YLD + + + + Sbjct: 1477 EFYFLGEDDCEEAEDVEVPKALGDVFESVAGAIYLDSNMSLDTVWKVYHKIMENEMEQFS 1536 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + K+ ++E K + R VVVEI G +G+ + R A+ Sbjct: 1537 KNVPKSPIRELLEL---EPETAKFSKPEKLADGRRVRVVVEIFGKGEFKGIGRNYRIAKC 1593 Query: 214 VAAAEV 219 AA Sbjct: 1594 TAAKCA 1599 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 2/98 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S+L +ALT S+ + + ERLE +GD L I+ L+ D+ EG+LS + V Sbjct: 1124 PSVLLQALTMSNANDGI--NLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQV 1181 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 S ++ + + + D Sbjct: 1182 SNLNLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPH 1219 >gi|186475606|ref|YP_001857076.1| ribonuclease III [Burkholderia phymatum STM815] gi|184192065|gb|ACC70030.1| Ribonuclease III [Burkholderia phymatum STM815] Length = 441 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 9 MPLSPLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 65 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD +E+++ Sbjct: 66 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAIL 125 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + + + +DAKT LQE+ P Y V Sbjct: 126 GAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIPLPTYTVVATH 185 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 186 GAAHNQQFEVECTVPKLDVKVSGSG 210 >gi|108804222|ref|YP_644159.1| RNAse III [Rubrobacter xylanophilus DSM 9941] gi|108765465|gb|ABG04347.1| RNAse III [Rubrobacter xylanophilus DSM 9941] Length = 233 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 91/222 (40%), Gaps = 17/222 (7%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L + + + L ++ALTH S++ Y S RLEFLGD IL ++ L+F+ + Sbjct: 15 MSIKELIEIL----PDP-LRKRALTHPSVADPYH-SNGRLEFLGDSILNHRVAELVFHSY 68 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+L+ LV + V R L I S S+ AD VE++I Sbjct: 69 PELLEGDLTRIRAHLVRKSFLASVGRSEGLEEMIESSV--------INDSVIADTVEAII 120 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A YL I+ + L + G+ P Y+V + GP Sbjct: 121 GAAYL---IDKNLVLRTIDEIFNPAEVDTDELRDWKTLLQETLQAEGLRPTYRVISKQGP 177 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 H P F V + G A G S + +EQ AA L+ G+ Sbjct: 178 PHRPVFISGVSVDGEEVATGRGSSIKQSEQAAARAALEILGV 219 >gi|324500060|gb|ADY40039.1| Endoribonuclease dcr-1 [Ascaris suum] Length = 1970 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 84/254 (33%), Gaps = 35/254 (13%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 ++S LE I Y F +R+ L +A TH+S + Y+RLEFLGD +L +I+ LF H Sbjct: 1702 QFSKLEDSICYRFKDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQHP 1761 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD------ 117 G L+ ++LV+ + +A + + + + A+ Sbjct: 1762 RQYSPGVLTDLRSALVNNTIFASLAVKYNFHKHFVAMCPGLHHMIEKFVRLCAEKNFSGA 1821 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 + + + + I+ + K + + V Sbjct: 1822 NFNAEMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLDVVWRVFYNLMK 1881 Query: 178 TFRSGPDHDP----------------RF------------TVVVEISGLAPAQGMDCSKR 209 ++P RF V V+I G GM S R Sbjct: 1882 ETIEECCNNPPKSPIRELLELEPERARFSKLERILETGKVRVTVDIQGKCRFTGMGRSYR 1941 Query: 210 AAEQVAAAEVLKRE 223 A+ AA L+ Sbjct: 1942 IAKCTAAKRALRYL 1955 Score = 38.4 bits (87), Expect = 0.78, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +ALT S+ S + ERLE +GD L ++ LF+ EG+LS + VS Sbjct: 1450 LLQALTMSNASDGI--NLERLETVGDSFLKYAVTDYLFHMNPEQHEGKLSFARSKEVSNC 1507 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ ++ +L S + + D ++ Sbjct: 1508 NLYRLGKKRNLPSLMVGAKFDPNDSWLPPCYAPTSDFKA 1546 >gi|330996547|ref|ZP_08320429.1| ribonuclease III [Paraprevotella xylaniphila YIT 11841] gi|329573103|gb|EGG54722.1| ribonuclease III [Paraprevotella xylaniphila YIT 11841] Length = 297 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 4/218 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFNH 62 YS+ K +G+ + E+AL H S S + ERLEFLGD IL ++ ++F H Sbjct: 21 YSSFYKILGFYPHHIQYYEQALHHKSSSIKKQGSWINNERLEFLGDAILDAVVGDIVFRH 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ + +V ET +++A E+ L I S+ + +V ++ Sbjct: 81 FKGKHEGFLTNTRSKIVQRETLNKLAVEIGLDKLIISSTHSSTHNSYMCGNAFEAMVGAI 140 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + G + + K ++ + +T + + G Sbjct: 141 YLDRGYSYCMRFIGKRIMTQLINIDKLAYKEVNFKSKLIEWGQKRRVEITFDLIDQAQEG 200 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P FT + I G+ +G SK+ ++Q+AA + L Sbjct: 201 NS-TPVFTTQITIEGVTCCKGRGYSKKESQQLAAKDTL 237 >gi|332881433|ref|ZP_08449083.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680809|gb|EGJ53756.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 297 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 4/218 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFNH 62 YS+ K +G+ + E+AL H S S + ERLEFLGD IL ++ ++F H Sbjct: 21 YSSFYKILGFYPHHIQYYEQALHHKSSSIKKQGSWINNERLEFLGDAILDAVVGDIVFRH 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F +EG L+ + +V ET +++A E+ L I S+ + +V ++ Sbjct: 81 FKGKREGFLTNTRSKIVQRETLNRLAVEIGLDKLIISSTHSSTHNSYMCGNAFEAMVGAI 140 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + G + + K ++ + +T + R G Sbjct: 141 YLDRGYSYCMRFIGKRIMTQLINIDKLAYKEVNFKSKLIEWGQKRRVEITFDLIDQAREG 200 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P FT + I G+ +G SK+ ++Q+AA + L Sbjct: 201 SS-TPVFTTQITIEGVTCCKGRGYSKKESQQLAAKDTL 237 >gi|295677176|ref|YP_003605700.1| ribonuclease III [Burkholderia sp. CCGE1002] gi|295437019|gb|ADG16189.1| ribonuclease III [Burkholderia sp. CCGE1002] Length = 426 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + + + +DAKT LQE+ P Y V Sbjct: 118 GAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|209517222|ref|ZP_03266067.1| Ribonuclease III [Burkholderia sp. H160] gi|209502358|gb|EEA02369.1| Ribonuclease III [Burkholderia sp. H160] Length = 423 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + + + +DAKT LQE+ P Y V Sbjct: 118 GAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|258648277|ref|ZP_05735746.1| ribonuclease III [Prevotella tannerae ATCC 51259] gi|260852193|gb|EEX72062.1| ribonuclease III [Prevotella tannerae ATCC 51259] Length = 284 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 83/223 (37%), Gaps = 5/223 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y + +G+ + A HSS + + + ERLEFLGD +L +++S ++F Sbjct: 20 YRKVYNILGFYPHDIEYYRIAFAHSSSEYKGRNGRTVNNERLEFLGDAVLEMVVSDIVFR 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F+ +EG L+ + +V T +Q+A E ++ +R S + + + Sbjct: 80 RFERKREGFLTGTRSKIVQRATLNQLAEETGISKLLRTSMRATSHNSNIGGNAFEAFFGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 L + + K L+ + + T + Sbjct: 140 LYLDRGYRAAYRFFAKRILGVHINLEAVAKKEENFKSKLLEWSQKNRLRAEFKLDRTENN 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + P F V + GL +G SK+ ++Q AA L + Sbjct: 200 -ASNGPVFYTTVRLEGLEAGKGSGYSKKESQQKAAKAALMKLK 241 >gi|148377702|ref|YP_001256578.1| ribonuclease III (RNase III) [Mycoplasma agalactiae PG2] gi|148291748|emb|CAL59137.1| Ribonuclease III (RNase III) [Mycoplasma agalactiae PG2] Length = 226 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 106/224 (47%), Gaps = 4/224 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLL 59 M+++ + ++ +A TH SS+++S ++Y+ LEFLGD IL +S +L Sbjct: 1 MNSI--ENFLNNFNIKPVSLAVYRQAFTHGSSVANSKGKNYQTLEFLGDAILQFYVSAIL 58 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 FN F +G+L++ + LV ++ +Q+A L L F+ +SS++ + AD+ Sbjct: 59 FNSFKDKNQGQLTLIRSKLVCTDSLNQIADLLKLKDFLVLSSNVVATEVLSSKKVGADIF 118 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ESL+AA++LD G+ F+DK + + + + + + + V + Sbjct: 119 ESLVAAIFLDQGLPKVKDFLDKTLLPLVKQYKEGKIE-LKDSKTRLQEHMQSFSKKTVFY 177 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ + F G G+ SK AE+ AA + L + Sbjct: 178 QTYQSENNLFKAEAIYEGNVYGSGVGKSKHEAEENAANDALNKL 221 >gi|187924875|ref|YP_001896517.1| ribonuclease III [Burkholderia phytofirmans PsJN] gi|187716069|gb|ACD17293.1| Ribonuclease III [Burkholderia phytofirmans PsJN] Length = 418 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|155370768|ref|YP_001426302.1| hypothetical protein FR483_N670L [Paramecium bursaria Chlorella virus FR483] gi|155122358|gb|ABT14226.1| hypothetical protein MT325_M672L [Paramecium bursaria chlorella virus MT325] gi|155124088|gb|ABT15955.1| hypothetical protein FR483_N670L [Paramecium bursaria Chlorella virus FR483] Length = 266 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 59/221 (26%), Positives = 90/221 (40%), Gaps = 5/221 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +G + L A S + E++ERLEFLGD +LG LI+ L++ F Sbjct: 43 EDIAHLVGMPVGDFGLYVTAF---SYNPILEGGETFERLEFLGDSVLGFLIAKYLYDTFP 99 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ VS + S++A L L ++I +S + I D E+LI Sbjct: 100 GKNEGILTRIRVKFVSGKFLSKLALNLGLHNYIIMSQKGLYRGWNTNPKILEDAFEALIG 159 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 A+YLDGGI A F + A + + + V Sbjct: 160 AIYLDGGINAAKQFFMTTLARHANIQELLIDSNHKDRLAKHCRRLSLGRPEFVIQFERGG 219 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + F V V + G A+G +++ AEQ A + L GI Sbjct: 220 ANSLFIVGVHVDGNKFAEGSGTTRKDAEQDACNKALLHMGI 260 >gi|254252845|ref|ZP_04946163.1| Ribonuclease III [Burkholderia dolosa AUO158] gi|124895454|gb|EAY69334.1| Ribonuclease III [Burkholderia dolosa AUO158] Length = 377 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L++A +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNIADGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATL 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|193582606|ref|XP_001943370.1| PREDICTED: endoribonuclease Dcr-1-like [Acyrthosiphon pisum] Length = 1626 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 92/251 (36%), Gaps = 35/251 (13%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + E+ +GY F +RS L +A+TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1374 FESFEQHLGYYFQDRSYLLQAMTHASYYPNCLTDCYQRLEFLGDAVLDYLITRHLYEDKR 1433 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99 G L+ ++LV+ + +A + +++ Sbjct: 1434 RHPPGALTDLRSALVNNTIFASLAVKNGFHKYLKHLSPGLSEVVYRFVAIQEENGHTIDE 1493 Query: 100 ------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 D + D+ ES+ A+YLD + + + + Sbjct: 1494 EFCFSGEDDFEDAEDVEAPKVLGDIFESVAGAIYLDSNMSLDAVWKVYHKIMENEIKQFS 1553 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + + ++E + K R V+VEI G +G+ + R A+ Sbjct: 1554 KNVPISPVRELLELEPNTAKFSKPEKLVDG---RRVRVIVEILGKGVFKGIGRNYRIAKC 1610 Query: 214 VAAAEVLKREG 224 AA L Sbjct: 1611 TAAKCALNHLK 1621 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 3/111 (2%) Query: 8 TLEKRIGYAF-ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + + Y + S+L +ALT + + ERLE +GD L ++ L+ ++ Sbjct: 1175 DFQPDLNYHPGPSPSILLQALT--TANAIDGYDLERLETIGDSFLKYAVTAYLYCTHNNV 1232 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 EG LS ++ VS ++ + + + + I Sbjct: 1233 HEGILSDLRSNHVSNLNLYRLGKLKMFGERMISTKFEPRSNWLPPCYIGPH 1283 >gi|317491018|ref|ZP_07949454.1| ribonuclease III [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920565|gb|EFV41888.1| ribonuclease III [Enterobacteriaceae bacterium 9_2_54FAA] Length = 226 Score = 101 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L+K++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVTNRLQKKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I+ + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGIFLDSDIQTIERLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 G HD FT+ ++SGL P G+ S+R Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVIGVGSSRRK 210 >gi|116618659|ref|YP_819030.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271141|sp|Q03VW5|RNC_LEUMM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|116097506|gb|ABJ62657.1| RNAse III [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 236 Score = 101 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 7/217 (3%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 MS + + + K+ +F + SLL +ALT + + + + Y+RLEFLGD ++ +++ Sbjct: 1 MSQDSFKSYILKKFNISFNDESLLTEALTQRNYLNEHPDEKGRDYQRLEFLGDSVMQMIV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + LF + EG+L+ ++V + + +R + L IR+ S+ Sbjct: 61 AEYLFKRYPDWHEGQLTEMRIAMVQTRSFAHFSRMVHLNEGIRLGKGEEMSGARDRDSLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ I ALYLD G +V F+++ R + G Sbjct: 121 EDIWEAFIGALYLDQGADVVRQFLNQTLFAAIDTDFFDRFIDFKSRLQERLQTKGSVDID 180 Query: 176 KVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRA 210 T + D+ F V + A+G S + Sbjct: 181 YQTEKEEQLSDNTQLFEASVSANDKELARGTGKSIKD 217 >gi|212529276|ref|XP_002144795.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224] gi|210074193|gb|EEA28280.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224] Length = 1497 Score = 101 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 87/250 (34%), Gaps = 33/250 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++K++GY F LL A TH S + S Y+RLEFLGD +L ++ L+ F Sbjct: 1212 NQIDKKLGYRFKYPRLLRSAFTHPSYPTAWSIVPCYQRLEFLGDSLLDMVCIENLYERFP 1271 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------------- 103 L+ ++VS + +A LDL + ++ S+ Sbjct: 1272 DRDPQWLTEHKMAMVSNKFLGSLAVRLDLHTHLQYFSNPLQGRIAQAVEDAQLAYESHQS 1331 Query: 104 --RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 + +D+VE+ + A+++D G + + D Sbjct: 1332 VDFWIMIEDPPKCLSDMVEAYLGAIFVDSGFDFGVIESFYAKHIKPYFEDMSLYDTFANK 1391 Query: 162 QEWAHAKFGVTPEYKVTFRSGP-------DHDPRFT-VVVEISGLAPAQGMDCSKRAAEQ 213 +T ++ + D P V + + AQ S R A+ Sbjct: 1392 HPTTFLHGKLTDDFGCIQYTLKAAEIPSVDGAPTVVLAAVLVHDVDLAQATASSGRYAKI 1451 Query: 214 VAAAEVLKRE 223 A+ LK Sbjct: 1452 KASEVALKNL 1461 Score = 43.8 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 19/137 (13%) Query: 9 LEKRIGYAFANRSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLIS 56 LE ++GYA +A+T H ++YERLEFLGD L + S Sbjct: 1012 LEIQLGYA-------LEAVTKDSDNTEEHRLEQIQFQRGMGKNYERLEFLGDCFLKMATS 1064 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF + +E +L V +L+ A+E + +IR R++ + Sbjct: 1065 ISLFVGSPNDQEFDLHVNRMTLICNRNLFNTAKERKIYEYIRSKGFSRRNWYPEGMKLLR 1124 Query: 117 DVVESLIAALYLDGGIE 133 A+ + G E Sbjct: 1125 GKANEDKASTHTHGLGE 1141 >gi|296809942|ref|XP_002845309.1| dicer-like protein 1 [Arthroderma otae CBS 113480] gi|238842697|gb|EEQ32359.1| dicer-like protein 1 [Arthroderma otae CBS 113480] Length = 1521 Score = 101 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 45/251 (17%), Positives = 81/251 (32%), Gaps = 34/251 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64 + +E+++GY F LL A H S Y+RLEFLGD +L + LF + Sbjct: 1238 NQIEEKLGYRFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMACVNHLFTKYP 1297 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102 L+ ++VS + +A L+L + S+ Sbjct: 1298 DKDPQWLTEHKMAMVSNKFLGSLAVGLNLHVHLIHISNVLQGQITCYTEELQAMKMEMGG 1357 Query: 103 --LRKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155 + D+VE+ + A+++D + +++ + F Sbjct: 1358 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVIDDFFKRFIQHYFEDMTVYDTFAN 1417 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT---VVVEISGLAPAQGMDCSKRAAE 212 A Y + P D V + A+G+ S R A+ Sbjct: 1418 KHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTIRALAAVCVHNDIVAEGVATSPRHAK 1477 Query: 213 QVAAAEVLKRE 223 A+ L+ Sbjct: 1478 LKASQNALQIL 1488 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 16/112 (14%) Query: 1 MSALRYSTLE--KRIGYAFANRSLLEKALTHSS------------ISHSYQESYERLEFL 46 M + LE +++ + L +ALT S ++YERLEFL Sbjct: 1023 MESY-LIALEACEKLQLKIS-PELALEALTKDSENTEEHGLEQIRFQSGMGKNYERLEFL 1080 Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 GD L + S LF E + V+ L+ + A L++ +IR Sbjct: 1081 GDCFLKMATSISLFAMNPDNDEYDFHVKRMLLICNQNLFNNAIILEVFKYIR 1132 >gi|288800507|ref|ZP_06405965.1| ribonuclease III [Prevotella sp. oral taxon 299 str. F0039] gi|288332720|gb|EFC71200.1| ribonuclease III [Prevotella sp. oral taxon 299 str. F0039] Length = 321 Score = 101 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 91/218 (41%), Gaps = 5/218 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63 +L +G+ N L + AL+H SI ++ + ERLEFLGD IL ++ +++ HF Sbjct: 2 SLYTILGFYPRNIELYQMALSHKSIHFKNKKGKPVNNERLEFLGDAILDAIVGDIVYKHF 61 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +EG L+ + LV ET +++A+E+ L+ + SS S+M + + + Sbjct: 62 PGKREGFLTNTRSKLVQRETLNKIAQEIGLSR-LIYSSGRNFSHNSYMAGNAFEALIGAL 120 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + K+ L EWA + + Sbjct: 121 YLDRGYNLCMRFMQEKILKKMVNIDTVAYKEVNFKSRLIEWAQKNKMNIAFNLLEQKKDE 180 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + +P F V I G+ SK+ ++Q+A+ E L+ Sbjct: 181 EGNPVFKYCVVIEGIKCNSASGFSKKESQQLASEETLE 218 >gi|124024288|ref|YP_001018595.1| ribonuclease III [Prochlorococcus marinus str. MIT 9303] gi|123964574|gb|ABM79330.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9303] Length = 262 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 17/234 (7%) Query: 5 RYSTLEKRI------------GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG 52 + L K++ G ++L++ALTH+S ++ERLEFLGD +L Sbjct: 24 QLQNLLKKLALVDPARSKSCPGTEPRGLAILDEALTHTSAQEII--NHERLEFLGDAVLR 81 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L S + HF GE S LVS ++V + + + + + + D + T Sbjct: 82 LAASEYIDRHFPRMDVGERSALRAHLVSDRWLAEVGQRIGIEAVLIIGPMAAGDASAKPT 141 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFG 170 + A +E ++ +W + + R ++K+ LQEW+ A+ Sbjct: 142 LQAEATEALIGALYECWQSLEPIHHWLTPHWHEASSAVLADPHRLNSKSALQEWSQARGL 201 Query: 171 VTPEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P Y+ RS DP R+ V + +G S+R AEQ AA L+ Sbjct: 202 GLPRYECAERSKQHGDPQRYLCQVHLDNRPIGEGWGGSRRNAEQEAARHSLEAL 255 >gi|291320365|ref|YP_003515628.1| ribonuclease III [Mycoplasma agalactiae] gi|290752699|emb|CBH40673.1| Ribonuclease III (RNase III) [Mycoplasma agalactiae] Length = 226 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 107/224 (47%), Gaps = 4/224 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLL 59 M+++ + + ++ +A TH SS+++S ++Y+ LEFLGD IL +S +L Sbjct: 1 MNSI--ESFLNNFNIKPVSLAVYRQAFTHGSSVANSKGKNYQTLEFLGDAILQFYVSAIL 58 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 FN F +G+L++ + LV ++ +Q+A L L F+ +SS++ + AD+ Sbjct: 59 FNSFKDKNQGQLTLIRSKLVCTDSLNQIADLLKLKDFLVLSSNVVATEVLSSKKVGADIF 118 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ESL+AA++LD G+ F+DK + + + + + + + V + Sbjct: 119 ESLVAAIFLDQGLPKVKEFLDKTLLPLVKQYKEGKIE-LKDSKTRLQEYMQSFSKKTVFY 177 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ + F G G+ SK AE+ AA + L + Sbjct: 178 QTYQSENNLFKAEAIYEGNVYGSGVGKSKHEAEENAANDALNKL 221 >gi|227432061|ref|ZP_03914075.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352178|gb|EEJ42390.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 236 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 7/217 (3%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 MS + + + K+ +F + SLL +ALT + + + + Y+RLEFLGD ++ +++ Sbjct: 1 MSQDSFKSYILKKFNVSFNDESLLTEALTQRNYLNEHPDEKGRDYQRLEFLGDSVMQMIV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + LF + EG+L+ ++V + + +R + L IR+ S+ Sbjct: 61 AEYLFKRYPDWHEGQLTEMRIAMVQTRSFAHFSRMVHLNEGIRLGKGEEMSGARDRDSLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ I ALYLD G +V F+++ + G Sbjct: 121 EDIWEAFIGALYLDQGADVVRQFLNQTLFAAIDTDFFDHFIDFKSRLQERLQTKGSVDID 180 Query: 176 KVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRA 210 T + D+ F V + A+G S + Sbjct: 181 YQTEKEEQISDNTQLFEASVSANDKELARGTGKSIKD 217 >gi|295425203|ref|ZP_06817906.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664] gi|295064979|gb|EFG55884.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664] Length = 227 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 93/213 (43%), Gaps = 9/213 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIS 56 M + ++ L ++ G F N LLE+A THSS ++ + E YE+LEFLGD +L L +S Sbjct: 1 MVSTKFLKQLNEKYGIKFHNEKLLEEAFTHSSYANEHPEGVRDYEKLEFLGDAVLELAVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ H+ + EGEL+ +++V E S+ A E I + K ++ Sbjct: 61 DYLYRHYPNLNEGELTRMRSNIVRTEGFSEFAIECGFQDEINLGKGEEKAGARHRKTLLE 120 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 DV E+ ALYLD G++ F+ K + K G Sbjct: 121 DVFEAFNGALYLDQGMKAVTHFLHLTVYPLIDKGEFDASRDYKTDLQELLQKDGPVNIEY 180 Query: 177 VT--FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 VT P H F V ++I+ +QG + Sbjct: 181 VTLSESQLPSH---FVVELKINDHVQSQGEGHN 210 >gi|18402610|ref|NP_566661.1| RTL2 (RNASE THREE-LIKE PROTEIN 2); double-stranded RNA binding / ribonuclease III [Arabidopsis thaliana] gi|75274109|sp|Q9LTQ0|RTL2_ARATH RecName: Full=Ribonuclease 3-like protein 2; AltName: Full=Ribonuclease III-like protein 2; Short=RNase III-like protein 2; AltName: Full=Ribonuclease three-like protein 2 gi|9294562|dbj|BAB02825.1| unnamed protein product [Arabidopsis thaliana] gi|332642855|gb|AEE76376.1| RNAse THREE-like protein 2 [Arabidopsis thaliana] Length = 391 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 29/244 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ +EK + Y F+N+SLL++A+TH+S + SYERLEF+GD +GL IS L+ Sbjct: 57 MESM--EAVEKILNYKFSNKSLLKEAITHTSCTD--FPSYERLEFIGDSAIGLAISNYLY 112 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111 + S + +LS+ + VS E ++V+ L SF+R ++ + Sbjct: 113 LTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDD 172 Query: 112 -----------TSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKT 159 + AD+ ESL A+Y+D ++ + + + + ++ + Sbjct: 173 LSVSYGGLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQP 232 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + ++ G V+ + A G +K A +AA E Sbjct: 233 VSMLFKLCHKHKKRIDIKNWKDGN----VSIAVIYLDDELLASGRAENKDIARLIAAKEA 288 Query: 220 LKRE 223 L++ Sbjct: 289 LRKL 292 >gi|238026617|ref|YP_002910848.1| ribonuclease III [Burkholderia glumae BGR1] gi|237875811|gb|ACR28144.1| Ribonuclease III [Burkholderia glumae BGR1] Length = 427 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MSQSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L++A +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNIADGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|225462996|ref|XP_002264486.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296084589|emb|CBI25610.3| unnamed protein product [Vitis vinifera] Length = 1623 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 97/246 (39%), Gaps = 29/246 (11%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S+ LEK +G+ F ++ LL +A+ H S + Y+RLEFLGD +L LI++ L++ Sbjct: 1195 SSTDVPALEKLLGHEFLHKGLLLQAIVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYS 1254 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD------------------- 102 + K G+++ + V+ ++ + VA L F+ + Sbjct: 1255 VYPKLKPGQMTDLRSLSVNNKSFANVAVSRSLHEFLICDASSLSEAIKKYVDFIRTPTLD 1314 Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTEL 161 D+VES + A+ LD G ++ + R + + + EL Sbjct: 1315 KDLHEGPKCPKALGDLVESCMGAILLDKGFDLNHAWNIMLSILDRIMSFSDLQLNPIREL 1374 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---AQGMDCSKRAAEQVAAAE 218 QE F V ++SG A + +++ A ++A+ + Sbjct: 1375 QELCQHHNWDLQFPTSKQG------GTFLVEAKVSGDDICTTASATNANRKDARRIASNQ 1428 Query: 219 VLKREG 224 + K+ Sbjct: 1429 LFKKLK 1434 Score = 37.2 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 6/126 (4%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +ALT + S ERLE LGD L + LF +D+ EGEL+ R +++V+ Sbjct: 1016 LEALTTEKCLERF--SLERLEVLGDAFLKFAVGRRLFLLYDALDEGELTRRRSNVVNNSN 1073 Query: 84 CSQVARELDLASFIRVSS----DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 ++A +L +IR S + + ++ + EV + Sbjct: 1074 LFKLAVRRNLQVYIRDQSFDPGQFFALGHRCPRICEKETEMAIHSRCGKTPTTEVRCSKC 1133 Query: 140 DKYWKQ 145 + + Sbjct: 1134 HHWLHK 1139 >gi|330815986|ref|YP_004359691.1| Ribonuclease III [Burkholderia gladioli BSR3] gi|327368379|gb|AEA59735.1| Ribonuclease III [Burkholderia gladioli BSR3] Length = 403 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 98/202 (48%), Gaps = 6/202 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 4 SQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKL 60 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A+ Sbjct: 61 DEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAIIGAV 120 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LDGG E A + + + +DAKT LQE+ P Y V G Sbjct: 121 FLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAA 180 Query: 185 HDPRFTVVVEISGLAP-AQGMD 205 H+ +F V + L G Sbjct: 181 HNQQFEVECTVPKLDIKVSGSG 202 >gi|33241211|ref|NP_876153.1| dsRNA-specific ribonuclease/ribonuclease III [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|5738536|emb|CAB52818.1| ribonuclease III [Prochlorococcus marinus] gi|33238741|gb|AAQ00806.1| dsRNA-specific ribonuclease/ribonuclease III [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 249 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 8/225 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + ++K Y +L +ALTH+S + ++ERLEF GD +L L S + + Sbjct: 28 HSSDIEVIKKNEDYCLK---ILNEALTHTSFN--LSINHERLEFQGDAVLRLAASEYIQS 82 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF G+ S LVS ++V ++ + + + +++ KD + T Sbjct: 83 HFPKLSVGDRSALRAQLVSDRWLAKVGYKIGIKTTMLIANKALKDEAATDTICAEGTEAL 142 Query: 122 LIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + A I+ + + + + +++ K+ LQEW+ + P Y + Sbjct: 143 IGALYECLRNIDAIQNWLEPYWNIESEEVLADPHKQNEKSALQEWSQGQGLNKPIYTIKE 202 Query: 180 RSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 S D RF V I +G S++ A++ AA E LK+ Sbjct: 203 ISKQHGDLKRFYCTVHIQNDFRGEGWGSSRKKAQKEAAKEALKKL 247 >gi|172060069|ref|YP_001807721.1| ribonuclease III [Burkholderia ambifaria MC40-6] gi|171992586|gb|ACB63505.1| Ribonuclease III [Burkholderia ambifaria MC40-6] Length = 425 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 98/202 (48%), Gaps = 6/202 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 4 SQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKL 60 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A+ Sbjct: 61 DEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAIIGAV 120 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LDGG E A + + + +DAKT LQE+ P Y V G Sbjct: 121 FLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAA 180 Query: 185 HDPRFTVVVEISGL-APAQGMD 205 H+ +F V + L G Sbjct: 181 HNQQFEVECTVPKLDVKVSGSG 202 >gi|115351064|ref|YP_772903.1| ribonuclease III [Burkholderia ambifaria AMMD] gi|115281052|gb|ABI86569.1| RNAse III [Burkholderia ambifaria AMMD] Length = 425 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 98/202 (48%), Gaps = 6/202 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 4 SQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKL 60 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A+ Sbjct: 61 DEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAIIGAV 120 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +LDGG E A + + + +DAKT LQE+ P Y V G Sbjct: 121 FLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAA 180 Query: 185 HDPRFTVVVEISGL-APAQGMD 205 H+ +F V + L G Sbjct: 181 HNQQFEVECTVPKLDVKVSGSG 202 >gi|159904268|ref|YP_001551612.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9211] gi|159889444|gb|ABX09658.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9211] Length = 249 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 8/225 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + ++K Y ++ +ALTH+S + + ++ERLEFLGD +L L S + Sbjct: 27 NKSNLEFIKKSKSYC---LNIFNEALTHTSTNS--KTNHERLEFLGDAVLRLAASEYIEE 81 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS--FMTSIQADVV 119 +F + K G+ S LVS E ++V +E+++ F+ + KD + + + + + Sbjct: 82 NFPNLKVGDRSALRAQLVSDEWLTKVGQEINIKQFMLIGPKAHKDKAASATLQAEATEAM 141 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + D +++ R ++K+ LQEW+ P YK Sbjct: 142 IGALYECLKDIKSIKVWLKPYWDKTSKSVLEDPHRLNSKSALQEWSQGNGLDIPIYKNEE 201 Query: 180 RSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 S DPR F V I+ +G S++ AE+ AA + L + Sbjct: 202 LSQKHGDPRRFFCKVLINKKILGEGWGSSRKQAEKEAALKALNKL 246 >gi|227892635|ref|ZP_04010440.1| ribonuclease III [Lactobacillus ultunensis DSM 16047] gi|227865567|gb|EEJ72988.1| ribonuclease III [Lactobacillus ultunensis DSM 16047] Length = 228 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 10/214 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ + L+ F N LLE+A THSS S+ + + YE+LEFLGD +L L + Sbjct: 1 MVSTKFLNKLKDEYNIEFNNEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ H+ EGEL+ +++V E S+ A E I + + K ++ Sbjct: 61 SDYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARKRKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 DV E+ AL+LD G+ F+ K + + G Sbjct: 121 EDVFEAFNGALFLDQGMPAVQHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVDIE 180 Query: 176 KVT--FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 P H F V ++I+ QG + Sbjct: 181 YTVVSESQLPSH---FVVELKINDKVQTQGEGHN 211 >gi|28493529|ref|NP_787690.1| ribonuclease III [Tropheryma whipplei str. Twist] gi|81437751|sp|Q83FY2|RNC_TROWT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|90101654|sp|Q83I82|RNC_TROW8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|28476571|gb|AAO44659.1| ribonuclease III [Tropheryma whipplei str. Twist] Length = 223 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 62/214 (28%), Positives = 95/214 (44%), Gaps = 9/214 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M + L ++ LL A H S S ++ ERLEFLGD +LGL++S Sbjct: 1 MDGVD-ELLLRKFNLTLP-PGLLRTAFVHKSFSFENGACQNNERLEFLGDAVLGLVVSHY 58 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF EG+LS + +VS + +Q+A+EL+L F+ + + TS+ AD+ Sbjct: 59 LFETCPEYTEGQLSAARSYIVSGTSIAQIAKELNLGQFMLLGKGEKLAGGMDKTSLLADL 118 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +ESLI A+ +D G E A FV ++ + G+F D + T Sbjct: 119 LESLIGAVMVDQGFESARDFVLALVGEKLRQVGEFSVDDPKTKLQKLTR----TQLVYEV 174 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 GP H F V ++ G SK+ A+ Sbjct: 175 VTEGPPHSRTFKASVIVNEKRFF-GQGSSKKQAQ 207 >gi|289178059|gb|ADC85305.1| Ribonuclease III [Bifidobacterium animalis subsp. lactis BB-12] Length = 270 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 6/205 (2%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL +ALTH S SH ++ ++YERLEFLGD +L +++ LF + EG+L+ Sbjct: 41 DLLVEALTHRSFSHEHEGVKNYERLEFLGDAVLEFVVTETLFKQYPDKSEGQLAKIRAKA 100 Query: 79 VSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 VS E+ S +AR L + +I + + + +SI D+VESLI A ++ G++ A Sbjct: 101 VSEESLSAIARDRLHVGPYILLGHGESEQGGAEKSSILCDIVESLIGATFVQYGVDKARE 160 Query: 138 FVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 V A + + + G+ GP++ FT + Sbjct: 161 VVHHLVDDTLAEVATEGPALDWKTSLTVKAHEMGLPEPRYQMSVGGPEYALEFTAFAMLG 220 Query: 197 G--LAPAQGMDCSKRAAEQVAAAEV 219 G SKR A+ AA + Sbjct: 221 DSKEVLGVGNGSSKRKAQLAAAEQA 245 >gi|183601845|ref|ZP_02963214.1| ribonuclease III [Bifidobacterium animalis subsp. lactis HN019] gi|219682760|ref|YP_002469143.1| ribonuclease III [Bifidobacterium animalis subsp. lactis AD011] gi|241190336|ref|YP_002967730.1| ribonuclease III [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195742|ref|YP_002969297.1| ribonuclease III [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218730|gb|EDT89372.1| ribonuclease III [Bifidobacterium animalis subsp. lactis HN019] gi|219620410|gb|ACL28567.1| ribonuclease III [Bifidobacterium animalis subsp. lactis AD011] gi|240248728|gb|ACS45668.1| ribonuclease III [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250296|gb|ACS47235.1| ribonuclease III [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793323|gb|ADG32858.1| ribonuclease III [Bifidobacterium animalis subsp. lactis V9] Length = 258 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 6/205 (2%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL +ALTH S SH ++ ++YERLEFLGD +L +++ LF + EG+L+ Sbjct: 29 DLLVEALTHRSFSHEHEGVKNYERLEFLGDAVLEFVVTETLFKQYPDKSEGQLAKIRAKA 88 Query: 79 VSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 VS E+ S +AR L + +I + + + +SI D+VESLI A ++ G++ A Sbjct: 89 VSEESLSAIARDRLHVGPYILLGHGESEQGGAEKSSILCDIVESLIGATFVQYGVDKARE 148 Query: 138 FVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 V A + + + G+ GP++ FT + Sbjct: 149 VVHHLVDDTLAEVATEGPALDWKTSLTVKAHEMGLPEPRYQMSVGGPEYALEFTAFAMLG 208 Query: 197 G--LAPAQGMDCSKRAAEQVAAAEV 219 G SKR A+ AA + Sbjct: 209 DSKEVLGVGNGSSKRKAQLAAAEQA 233 >gi|254245911|ref|ZP_04939232.1| Ribonuclease III [Burkholderia cenocepacia PC184] gi|124870687|gb|EAY62403.1| Ribonuclease III [Burkholderia cenocepacia PC184] Length = 350 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 19 MPSSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 75 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 76 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 135 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 136 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 195 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 196 GAAHNQQFEVECTVPKLDVKVSGSG 220 >gi|170732444|ref|YP_001764391.1| ribonuclease III [Burkholderia cenocepacia MC0-3] gi|169815686|gb|ACA90269.1| Ribonuclease III [Burkholderia cenocepacia MC0-3] Length = 409 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPSSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|107022210|ref|YP_620537.1| ribonuclease III [Burkholderia cenocepacia AU 1054] gi|116689156|ref|YP_834779.1| ribonuclease III [Burkholderia cenocepacia HI2424] gi|105892399|gb|ABF75564.1| RNAse III [Burkholderia cenocepacia AU 1054] gi|116647245|gb|ABK07886.1| RNAse III [Burkholderia cenocepacia HI2424] Length = 409 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPSSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD E++I Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|253999489|ref|YP_003051552.1| ribonuclease III [Methylovorus sp. SIP3-4] gi|313201514|ref|YP_004040172.1| ribonuclease III [Methylovorus sp. MP688] gi|253986168|gb|ACT51025.1| ribonuclease III [Methylovorus sp. SIP3-4] gi|312440830|gb|ADQ84936.1| ribonuclease III [Methylovorus sp. MP688] Length = 224 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 68/202 (33%), Positives = 96/202 (47%), Gaps = 6/202 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE+ +G+ F N LL +ALTH S S + ERLEFLGD +L +I+ LF F E Sbjct: 6 LERLLGHDFTNGQLLTQALTHRSHS---ARNNERLEFLGDGVLNCIIANQLFQRFSKLPE 62 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G+LS LV T ++A+ L L +++ K S+ AD +E++I A++L Sbjct: 63 GDLSRLRAHLVKEPTLCEIAQRLQLGDMLKLGEGELKSGGWRRPSVLADALEAIIGAVFL 122 Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 D G A V + + A+ +DAK+ LQE+ + PEY VT G H Sbjct: 123 DAGFIAAEALVVRLYTPLLEAIDPKSIGKDAKSLLQEYLQGRKIALPEYTVTATEGEAHC 182 Query: 187 PRFTVVVEISGLAPAQ-GMDCS 207 F V I L G S Sbjct: 183 QLFKVDCTIPKLKLVTHGEGSS 204 >gi|312376926|gb|EFR23879.1| hypothetical protein AND_11908 [Anopheles darlingi] Length = 994 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 50/273 (18%), Positives = 88/273 (32%), Gaps = 54/273 (19%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S S + + Y+RLEFLGD IL LI+ L+ Sbjct: 711 FEVFERSLGYHFQDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRR 770 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A + S ++V IQ + + Sbjct: 771 QHSPGALTDLRSALVNNTIFAALAVRHGFHRYFLHLSPGLQEVIDRFVRIQQENGHRITE 830 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--------------------RDAKTELQEW 164 Y + D + + + ++ Sbjct: 831 EEYYLPDEDDDMLAADGGFGGGFGEIEGGQALMGSGEAEDVEVPKALGDVFESIAGAIFL 890 Query: 165 AHAKFGVTPEYKVTFRSGPDHDP---------------------------------RFTV 191 T GP+ + R V Sbjct: 891 DSGMSLNTVWKVYRKMMGPEIEKFSSSVPKSPIRELLEMEPETAKFGKPEKLADGRRVRV 950 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 VE+ G +G+ + R A+ AA L++ Sbjct: 951 TVEVFGKGTFRGIGRNYRIAKCTAAKCALRQLK 983 Score = 42.2 bits (97), Expect = 0.059, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +++ +ALT S+ + + ERLE +GD L I+T L+ +D+ EG+LS + V Sbjct: 377 PAIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCRYDNVHEGKLSHLRSKQV 434 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 S ++ R L + + D +E Sbjct: 435 SNLNLYRLGRRKRLGDCMIAAKFEPHDNWLPPCYYVPKELE 475 >gi|28572359|ref|NP_789139.1| ribonuclease III [Tropheryma whipplei TW08/27] gi|28410490|emb|CAD66876.1| ribonuclease III [Tropheryma whipplei TW08/27] Length = 215 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 60/195 (30%), Positives = 90/195 (46%), Gaps = 7/195 (3%) Query: 20 RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 LL A H S S ++ ERLEFLGD +LGL++S LF EG+LS + Sbjct: 10 PGLLRTAFVHKSFSFENGACQNNERLEFLGDAVLGLVVSHYLFETCPEYTEGQLSAARSY 69 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 +VS + +Q+A+EL+L F+ + + TS+ AD++ESLI A+ +D G E A Sbjct: 70 IVSGTSIAQIAKELNLGQFMLLGKGEKLAGGMDKTSLLADLLESLIGAVMVDQGFESARD 129 Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 FV ++ + G+F D + T GP H F V ++ Sbjct: 130 FVLALVGEKLRQVGEFSVDDPKTKLQKLTR----TQLVYEVVTEGPPHSRTFKASVIVNE 185 Query: 198 LAPAQGMDCSKRAAE 212 G SK+ A+ Sbjct: 186 KRFF-GQGSSKKQAQ 199 >gi|319763845|ref|YP_004127782.1| ribonuclease iii [Alicycliphilus denitrificans BC] gi|330823891|ref|YP_004387194.1| ribonuclease 3 [Alicycliphilus denitrificans K601] gi|317118406|gb|ADV00895.1| ribonuclease III [Alicycliphilus denitrificans BC] gi|329309263|gb|AEB83678.1| Ribonuclease 3 [Alicycliphilus denitrificans K601] Length = 228 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 107/208 (51%), Gaps = 6/208 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M L++R+ + F++ SLL++A+TH S S + ERLEFLGD +L L +S+LLF Sbjct: 1 MPPDSLPALQQRLQHMFSDPSLLQRAVTHRSFS---ADHNERLEFLGDSVLNLAVSSLLF 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 EGELS LV E+ +A L L +R+ + SI AD +E Sbjct: 58 KRMQGLPEGELSRVRALLVRQESLHGIAVRLQLPQVLRLGEGESRSGGKMRPSILADALE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++I A+YLD G E A V + ++ + + + + +DAKT LQEW + P+Y+V Sbjct: 118 AVIGAVYLDAGYEQAQALVHRLFEGVELSPRLQEAAKDAKTALQEWLQGRKMSLPQYRVV 177 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMD 205 +G H F V E+ L A+ G Sbjct: 178 QTTGVAHKQVFHVACEVPALQLAERGSG 205 >gi|167645701|ref|YP_001683364.1| ribonuclease III [Caulobacter sp. K31] gi|189043302|sp|B0T3I0|RNC_CAUSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|167348131|gb|ABZ70866.1| Ribonuclease III [Caulobacter sp. K31] Length = 232 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 121/206 (58%), Gaps = 3/206 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63 + LE+RIG+ FA+R LLE ALTH+S+ ++ E LEF+GDR+LGLL + L F Sbjct: 8 VADLERRIGHTFADRKLLELALTHASVGDGAKKAGDNEVLEFIGDRVLGLLAAEALAERF 67 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 AKEGEL+ R N+LVS ETC++VAR ++ +R+S+ K SI A E+L+ Sbjct: 68 PKAKEGELAPRLNALVSRETCARVARGAEMGPALRLSASSSKIGGRETDSILAGAAEALM 127 Query: 124 AALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 AALY DGG+E+A + + L + RD KT LQEWA ++ P Y V R G Sbjct: 128 AALYRDGGLELARRVFLDLWAGEFDLANQGKPRDPKTALQEWAQSQGKPLPTYAVKDRKG 187 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSK 208 PDH P FTV V + GL P S+ Sbjct: 188 PDHAPMFTVQVTVVGLDPVFAEGRSR 213 >gi|154283385|ref|XP_001542488.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150410668|gb|EDN06056.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 1359 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 78/232 (33%), Gaps = 15/232 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 + R+GY F LL A TH+S ++ Y+RLEFLGD +L ++ L++H+ Sbjct: 1097 KQIGNRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYP 1156 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 L+ ++VS + V +L L + S+ + V Sbjct: 1157 DRDPQWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESAD 1216 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + + ++++ E + + + Sbjct: 1217 SPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQYFEDMSIYDAFAN 1276 Query: 185 H-------------DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +PR V + AQG+ S R A+ A+ L + Sbjct: 1277 KHPTAGEVQMVDSTEPRIYAAVIVHDKFVAQGIASSVRYAKTKASDAALAKL 1328 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 12/92 (13%) Query: 21 SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +ALT H ++YERLEFLGD L + S LF E Sbjct: 903 HLALEALTKDSDNTEEHRKEQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDE 962 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVS 100 + V+ L+ + A L L F+R Sbjct: 963 FDFHVKRMCLICNQNLFNTAVRLKLYEFVRTQ 994 >gi|119476421|ref|ZP_01616772.1| ribonuclease III [marine gamma proteobacterium HTCC2143] gi|119450285|gb|EAW31520.1| ribonuclease III [marine gamma proteobacterium HTCC2143] Length = 229 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 71/204 (34%), Positives = 108/204 (52%), Gaps = 6/204 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +++G+ F + SL++ AL+H S+ ++ ERLEFLGD I+ L++ LF F +E Sbjct: 11 LIQKLGHEFNDPSLVDLALSHRSVG---AKNNERLEFLGDSIVNFLMAEALFQKFPECRE 67 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 GELS LV ET +++A+E + + + K SI AD VE+LI A+YL Sbjct: 68 GELSQMRAQLVKGETLAEIAKEFSVGEHLNLGPGELKSGGYRRESILADAVEALIGAIYL 127 Query: 129 DGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 DGG+ V ++++ R +DAKT LQEW A+ P+Y + SG DH Sbjct: 128 DGGMAACNEHVPRWFESRLDLISPRNSNKDAKTRLQEWLQARKMPLPQYVLINTSGSDHQ 187 Query: 187 PRFTVVVEISG-LAPAQGMDCSKR 209 +FT+ +I G S+R Sbjct: 188 QQFTIECDIHHLQQRFTGDGSSRR 211 >gi|255577153|ref|XP_002529460.1| ribonuclease III, putative [Ricinus communis] gi|223531076|gb|EEF32926.1| ribonuclease III, putative [Ricinus communis] Length = 342 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 104/245 (42%), Gaps = 28/245 (11%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + S +EK + Y F N+ L+E+ALTHSS + +Y+RLEF+GD LGL +S + Sbjct: 1 MEASSSISAVEKILNYTFKNKQLVEEALTHSSY--TASPNYQRLEFIGDAALGLALSNHV 58 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-------- 111 F + G LS+ + +S E ++VA + L F+R ++ D Sbjct: 59 FLAYPDLDPGHLSLLRAANISTEKLARVAVKHGLFRFLRHNATALDDKVKEFSDAVLREE 118 Query: 112 ------------TSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAK 158 + AD+VES+ AA+Y+D ++ + + + + ++ + Sbjct: 119 DEAVAHGGTVKAPKVLADIVESVAAAVYVDVNFDLQRLWVIFRGLLEPIVTPEDLQQQPQ 178 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + + V ++SG + + + G A G K A+ AA Sbjct: 179 PMTMLFELCQKKGKEVDIVHWKSGTKN----IASIYVDGGFVASGSSEQKETAKLNAAKG 234 Query: 219 VLKRE 223 L++ Sbjct: 235 ALQKL 239 Score = 39.5 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSK-RAAEQ 213 K +L E K P Y + +GP H+ ++ V+I G+ +G + + + A+ Sbjct: 267 KRKLHELCGKKKWPKPTYNIEKETGPSHEKKYVCSVQIATVDGVLYMRGDEKMRVKEADN 326 Query: 214 VAAAEVLKRE 223 AA+ +++ Sbjct: 327 SAASLMIRAL 336 >gi|321309555|ref|YP_004191884.1| ribonuclease III [Mycoplasma haemofelis str. Langford 1] gi|319801399|emb|CBY92045.1| ribonuclease III [Mycoplasma haemofelis str. Langford 1] Length = 229 Score = 100 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 92/225 (40%), Gaps = 12/225 (5%) Query: 2 SALRYST-LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLIST 57 S L L K G +++L KA THSS + +++ YE+LEFLGD ++GL I++ Sbjct: 3 SKLSLEEFLNKSFGLTIKDKNLFTKAFTHSSYKGCNPNFKGDYEKLEFLGDSVIGLSIAS 62 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF S S + +VS + + V R+LD ++IRV + SI D Sbjct: 63 ELFKRDISLGAISTSK--DQIVSGSSLAYVGRKLDFHNYIRVGNSCCV----ISDSIIED 116 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 V E+ I A+Y + G E A V L + Sbjct: 117 VYEAFIGAVYCEFGFETARKIVLSSLWNYFLMGELDFYFDYKTKLNTLVGQKYKGKVTYT 176 Query: 178 TFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 S P D F V + + + G+ + + AEQ AA + L Sbjct: 177 LIDSFPSKDGSTTFKVSASWNNDSLSIGLGTTLKKAEQAAAQDAL 221 >gi|157285013|gb|ABV31246.1| dicer-like 4 [Physcomitrella patens] Length = 1445 Score = 100 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 87/250 (34%), Gaps = 31/250 (12%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH-- 62 + S LE + Y F N+ LL +ALTH+S + Y+RL FLGD +L LI+ + + Sbjct: 1173 KVSELEILLNYKFQNKGLLVEALTHASCRRHSGDCYQRLGFLGDAVLDFLITKHFYANSA 1232 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++ V+ E ++VA +L ++ +S V +L Sbjct: 1233 NLKRDPGLLTDLRSAAVNNECFARVAVRHNLHLYLLHNSSDLAARVDKYVHGSTTDVCAL 1292 Query: 123 IAALYLDGGIEVAGTF---------------VDKYWKQRALKSGKFRRDAKTELQEWAHA 167 A L + + Y K Sbjct: 1293 SEAFLLSKHLSCSSMQVLSDLVESLAGAVFLDSGYKLDTVWNVFKQLLKPLVTPATLRLE 1352 Query: 168 KFGVTPEYKVTFRSGPDHDPR-------F--TVVVEISGLAPAQGMDCSK---RAAEQVA 215 E T + G + + F TV VE+ G+ K ++A +VA Sbjct: 1353 PIRELWELCQTEKFGEPNYKKKREAMGDFDMTVTVELKDETI-TGVGR-KPDEKSARKVA 1410 Query: 216 AAEVLKREGI 225 A + L+ + Sbjct: 1411 AIQALETLKV 1420 >gi|313768121|ref|YP_004061552.1| hypothetical protein BpV1_122 [Bathycoccus sp. RCC1105 virus BpV1] gi|312599728|gb|ADQ91749.1| hypothetical protein BpV1_122 [Bathycoccus sp. RCC1105 virus BpV1] Length = 242 Score = 100 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 4/218 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLF 60 + ++E +G L +KA H SI + S+E LEF+GD +LG +I+ LF Sbjct: 3 IDRQSVELLVGTKITKLDLYQKAFRHKSILKEDESLDGSFETLEFIGDSVLGFVITKFLF 62 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + +++ +EG L+ LV ET + +A +L L +++++ ++ I DV E Sbjct: 63 DRYENRQEGFLTKARTKLVRGETLADIATKLGLYNWVQMDEKGMRNEWFKNPKILEDVFE 122 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +L+ A+Y+D G+ A F+ + + ++ +R Sbjct: 123 ALVGAIYMDLGLLHAKQFILNIYTNPEYVNMNSIMVD-DNFKDHLMRHCQTNNLSLPEYR 181 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + F + V + + +G +K+ AEQ AA Sbjct: 182 VLNHENGIFYIDVYVDNVFLGRGHAKNKKQAEQHAAKR 219 >gi|17511264|gb|AAK68755.2| Unknown protein [Arabidopsis thaliana] gi|20148705|gb|AAM10243.1| unknown protein [Arabidopsis thaliana] Length = 391 Score = 100 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 29/244 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ +EK + Y F+N+SLL++A+TH+S + SYERLEF+GD +GL IS L+ Sbjct: 57 MESM--EAVEKILNYKFSNKSLLKEAVTHTSCTD--FPSYERLEFIGDSAIGLAISNYLY 112 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111 + S + +LS+ + VS E ++V+ L SF+R ++ + Sbjct: 113 LTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDD 172 Query: 112 -----------TSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKT 159 + AD+ ESL A+Y+D ++ + + + + ++ + Sbjct: 173 LSVSYGGLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQP 232 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + ++ G V+ + A G +K A +AA E Sbjct: 233 VSMLFKLCHKHKKRIDIKNWKDGN----VSIAVIYLDDELLASGRAENKDIARLIAAKEA 288 Query: 220 LKRE 223 L++ Sbjct: 289 LRKL 292 >gi|315038614|ref|YP_004032182.1| ribonuclease III [Lactobacillus amylovorus GRL 1112] gi|312276747|gb|ADQ59387.1| ribonuclease III [Lactobacillus amylovorus GRL 1112] Length = 228 Score = 100 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 56/214 (26%), Positives = 88/214 (41%), Gaps = 10/214 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ L+ F N LLE+A THSS S+ + + YE+LEFLGD +L L + Sbjct: 1 MVSTKFLKKLKDEYNVKFNNEKLLEEAFTHSSYSNEHPDAGIRDYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ H+ EGEL+ +++V E S+ A E I + + K ++ Sbjct: 61 SNYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARNRKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 DV E+ ALYLD G+ F+ K + + G Sbjct: 121 EDVFEAFNGALYLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVNIE 180 Query: 176 KVTFRSG--PDHDPRFTVVVEISGLAPAQGMDCS 207 P H F V ++I+ A +G + Sbjct: 181 YSVISESQLPSH---FEVELKINDEAKTRGEGHN 211 >gi|325299342|ref|YP_004259259.1| Ribonuclease 3 [Bacteroides salanitronis DSM 18170] gi|324318895|gb|ADY36786.1| Ribonuclease 3 [Bacteroides salanitronis DSM 18170] Length = 325 Score = 100 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 + G+ N + ++AL H S S ++ + ERLEFLGD IL +++ +++ F+ Sbjct: 23 FYRMTGFYPRNIDIYKQALLHKSSSIKNEKGRLLNNERLEFLGDAILDAVVADIVYKRFE 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ET + +A ++ L ++ ++ + ++ +L Sbjct: 83 KKREGFLTNTRSKIVQRETLNHIAVQIGLDKLVKFTTRQSSHNSYMGGNAFEALIGALYL 142 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + S K ++ KF + Sbjct: 143 DRGYRACKKFMEERIISQYLDIDKLSRKEVNFKSKLIEWSQKNKFQIAFNLVNQSLDDEL 202 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +P F + + + G SK+ ++Q AA E LK+ Sbjct: 203 -NPIFNTQILVENVPAGTGKGYSKKESQQEAAHETLKKIK 241 >gi|303236120|ref|ZP_07322722.1| ribonuclease III [Prevotella disiens FB035-09AN] gi|302483702|gb|EFL46695.1| ribonuclease III [Prevotella disiens FB035-09AN] Length = 293 Score = 100 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61 Y ++ IG N + AL H S++ ++ + ERLEFLGD IL ++ ++F Sbjct: 20 YLSIYHIIGILPHNLEYYKTALLHKSVARRNEKGRPINNERLEFLGDAILDAIVGDIVFQ 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF +EG L+ + +V +T +++A+++ + I S+ S++ + + Sbjct: 80 HFSGKREGFLTNTRSKIVQRDTLNRLAKDMGITRLIL-SNGRSASHNSYLGGNAFEALVG 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + + + K + K++L EW + F Sbjct: 139 ALYLDHGYNACKKFMQKQILGELINIDKVAYKEVNFKSKLLEWTQKHKVEIEFKPLNFGK 198 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D +P F+ V + +A +G SK+ ++Q AA E ++R Sbjct: 199 DSDGNPTFSFQVILENIACGEGKGYSKKESQQEAAKETMQRI 240 >gi|325957095|ref|YP_004292507.1| ribonuclease III [Lactobacillus acidophilus 30SC] gi|325333660|gb|ADZ07568.1| ribonuclease III [Lactobacillus acidophilus 30SC] gi|327183818|gb|AEA32265.1| ribonuclease III [Lactobacillus amylovorus GRL 1118] Length = 228 Score = 100 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 56/214 (26%), Positives = 88/214 (41%), Gaps = 10/214 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ L+ F N LLE+A THSS S+ + + YE+LEFLGD +L L + Sbjct: 1 MVSTKFLKKLKDEYNVKFNNEKLLEEAFTHSSYSNEHPDAGIRDYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ H+ EGEL+ +++V E S+ A E I + + K ++ Sbjct: 61 SNYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARSRKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 DV E+ ALYLD G+ F+ K + + G Sbjct: 121 EDVFEAFNGALYLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVNIE 180 Query: 176 KVTFRSG--PDHDPRFTVVVEISGLAPAQGMDCS 207 P H F V ++I+ A +G + Sbjct: 181 YSVISESQLPSH---FEVELKINDEAKTRGEGHN 211 >gi|283131646|dbj|BAI63215.1| Dicer [Hemicentrotus pulcherrimus] Length = 1816 Score = 100 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 92/254 (36%), Gaps = 39/254 (15%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y EK I Y F +R+ L +A THSS +S + Y+RLEFLGD +L LI+ L++H Sbjct: 1562 YDGFEKTINYRFKDRAYLLQAFTHSSYHRNSITDCYQRLEFLGDALLDYLITRHLYDHHT 1621 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111 + G L+ ++LV+ + +A + + + + + V Sbjct: 1622 NLSPGALTDLRSALVNNTIFASLAVKFNFHKYFKAYTANMFQVIDNFVTFVDAKNEALGM 1681 Query: 112 ---------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 D+ ES+ A+YLD G+ + + Y + Sbjct: 1682 DSQLKYSEMDGEQEESEDIEVPKALGDIFESVAGAIYLDSGMSLNAVWKVYYPMMKQQIE 1741 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + ++E + D + V V + G +G+ + Sbjct: 1742 QYASDLPISPVRELLEMEPETARFGPPEKTI----DGKTRVTVNVVGKGQFKGIGRNYHI 1797 Query: 211 AEQVAAAEVLKREG 224 A+ AA L+ Sbjct: 1798 AKATAARFALRHLK 1811 >gi|313678609|ref|YP_004056349.1| ribonuclease III [Mycoplasma bovis PG45] gi|312950171|gb|ADR24766.1| ribonuclease III [Mycoplasma bovis PG45] Length = 224 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 102/224 (45%), Gaps = 4/224 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLL 59 M+++ + + + +A TH SS +++ ++Y+ LEFLGD IL +S +L Sbjct: 1 MNSI--ENFLNQFNIKANSLLVYRQAFTHGSSAANAKNKNYQTLEFLGDAILQFYVSAIL 58 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 FN F +G+L++ LV ++ + +A L L F+ +SS++ + + AD+ Sbjct: 59 FNVFKDKNQGQLTLIRAKLVCTDSLNSIADRLKLKDFLLLSSNVVANEVLSSKKVGADIF 118 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 ESL+AA+++D G+ F+DK + + + + K + + Sbjct: 119 ESLVAAIFIDQGMPKVKEFLDKTLLPLVKQYKEGKIELKDSKTRLQEYMQSFSKKTVFYQ 178 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D++ F G G+ SK AE+ AA + L + Sbjct: 179 TYQSDNNQ-FKSEAIYEGNVYGSGLGKSKHEAEENAANDALNKL 221 >gi|307730527|ref|YP_003907751.1| ribonuclease III [Burkholderia sp. CCGE1003] gi|307585062|gb|ADN58460.1| ribonuclease III [Burkholderia sp. CCGE1003] Length = 420 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPSSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYELAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A T + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLEVKVSGSG 202 >gi|162449970|ref|YP_001612337.1| ribonuclease III [Sorangium cellulosum 'So ce 56'] gi|161160552|emb|CAN91857.1| ribonuclease III [Sorangium cellulosum 'So ce 56'] Length = 275 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 73/198 (36%), Positives = 104/198 (52%), Gaps = 7/198 (3%) Query: 19 NRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 + LE+ALTH S S+ + +RLEFLGD +LGL ++ LL F A+EGELS+ Sbjct: 17 DLPHLEEALTHPSFSNEQRGGRRVDNQRLEFLGDAVLGLCVTELLMERFPGAREGELSMM 76 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 ++LV+ + + AR ++L + +RV T++ AD E+L+AALYLD G E Sbjct: 77 RSALVNTDALAAWARGIELGAALRVGRGAEVAGERDQTNVLADATEALVAALYLDRGFES 136 Query: 135 AGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 A K + RDAK+ELQE A+ +P Y++ GPDHD F V Sbjct: 137 ARALSRKIAASPLAQLASGSLLGRDAKSELQERVQARGAASPRYRLMGTEGPDHDRAFLV 196 Query: 192 VVEISGLAPAQGMDCSKR 209 VE+ G G SK+ Sbjct: 197 AVEVDGQVIGTGRGRSKK 214 >gi|42766|emb|CAA26504.1| unnamed protein product [Escherichia coli] Length = 227 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 7/214 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG++S +LV T +++ARE +L +R+ K SI AD VE Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +LI ++LD I+ + +++ R + + + + + + + ++ Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRPSAAADLSGS 177 Query: 181 SGPDHDPRFT----VVVEISGLAPAQGMDCSKRA 210 G + P G S+R Sbjct: 178 PGTWSKRTIRNLLSTARSVGLSEPVVGTGSSRRK 211 >gi|189502546|ref|YP_001958263.1| hypothetical protein Aasi_1206 [Candidatus Amoebophilus asiaticus 5a2] gi|189497987|gb|ACE06534.1| hypothetical protein Aasi_1206 [Candidatus Amoebophilus asiaticus 5a2] Length = 241 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 5/219 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + + N SL AL HSS + + S ERLEFLGD +L L+++ LF + Sbjct: 25 NAIYAITTLHPHNLSLYRLALQHSS-AKIEENSNERLEFLGDAVLSLVVAEYLFKKYPLQ 83 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 +EG L+ + +V+ + ++A+ + + + D R + + + +E+ I A+ Sbjct: 84 EEGFLTEIRSRIVNRASLGELAKRIGMDELLTY--DTRSVNHHNIKFVYGNALEAFIGAV 141 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP--D 184 YLD G + F+ + + + + + Sbjct: 142 YLDQGYALCAQFIVDRLLKIHVDLETIVLTDNNYKSKIIAWAQKNRKHIQFILITEKRIK 201 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +G+ +K+ AEQ+AA E LKR Sbjct: 202 GVREFVVQLLLEGEVYGEGVGKTKKQAEQMAAQESLKRI 240 >gi|225159274|ref|ZP_03725574.1| Ribonuclease III [Opitutaceae bacterium TAV2] gi|224802127|gb|EEG20399.1| Ribonuclease III [Opitutaceae bacterium TAV2] Length = 250 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 6/210 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62 + L+ RIG+ F +LLE A+TH S ++ +RLE LGD +L LL++ L+ Sbjct: 21 LAALQMRIGHKFTTPALLETAITHPSWLQDNPGAPDNNQRLELLGDAVLQLLLTHELYTL 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F + +EG LS R L +Q+ARE+ L + +R+S+ + S D E+L Sbjct: 81 FPTDREGPLSKRRAVLSRGGFLAQLAREVGLDTVLRLSASEEQTGGRQRDSALEDAFEAL 140 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ALYLD G++ + + ++ + + + K LQE G T Sbjct: 141 FGALYLDAGLDRTREVLRTLYGPLNVRLETTEDTDNPKGRLQERVQPLHGNQALRYETAH 200 Query: 181 -SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SG DH + + + G SK+ Sbjct: 201 ISGQDHAREYESRLYVLEHQFGTGRGPSKK 230 >gi|296115041|ref|ZP_06833683.1| ribonuclease III [Gluconacetobacter hansenii ATCC 23769] gi|295978378|gb|EFG85114.1| ribonuclease III [Gluconacetobacter hansenii ATCC 23769] Length = 255 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 80/219 (36%), Positives = 113/219 (51%), Gaps = 17/219 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----------------SYERLEFLGDR 49 + +E +GY F N +LL +ALTH S +H S ERLEF+GDR Sbjct: 22 FERIEAYVGYCFRNAALLHEALTHRSAAHQRSSAIGRRTRQSVARRGAGSNERLEFIGDR 81 Query: 50 ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 +LGLL++ L F +EG L R LVS + +A ++ L S + V+ + Sbjct: 82 VLGLLMAEWLLERFPDEQEGALGPRHAHLVSRAVLAHIAEDMALPSALDVAEHEARAGVR 141 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 M ++ AD VE+++ A+YLDGG+E A FV + W + + +D KT LQEW A+ Sbjct: 142 QMANVLADAVEAILGAIYLDGGLEPARAFVRRAWNNAIVAQARPPKDPKTALQEWVLARG 201 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 P YKV GP H PRF + VE SG +G+ SK Sbjct: 202 LPLPVYKVVSTDGPSHAPRFVISVEASGRR-GEGVAGSK 239 >gi|255565079|ref|XP_002523532.1| Ribonuclease III, putative [Ricinus communis] gi|223537239|gb|EEF38871.1| Ribonuclease III, putative [Ricinus communis] Length = 1633 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 99/245 (40%), Gaps = 29/245 (11%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ S+LE + + F NR L+ +A H S + Y+RLEFLGD +L LI++ LF+ Sbjct: 1204 SIDVSSLEDSLDHQFVNRGLVLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLFSV 1263 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL------------------- 103 + K G L+ ++LV+ + VA + F+ S Sbjct: 1264 YPKLKPGLLTDLRSALVNNRAFAIVAVDRSFNEFLICDSGNLSEAIETYVNFVKRPAVEK 1323 Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 + D+VES I A++LD G + + + L S + EL Sbjct: 1324 DSLEGPKCPKVLGDLVESCIGAIFLDTGFDLNCIWKLMLSFLDPILNSSNVLLNPFRELH 1383 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---AQGMDCSKRAAEQVAAAEV 219 E+ + + D F V +++G A + +K+ A ++A+ ++ Sbjct: 1384 EFCESHKWKLQFPTLKR------DMNFLVEAKVTGKDICLDASANNSNKKEAIRIASEQI 1437 Query: 220 LKREG 224 + + Sbjct: 1438 IVKLK 1442 >gi|58337573|ref|YP_194158.1| ribonuclease III [Lactobacillus acidophilus NCFM] gi|227904215|ref|ZP_04022020.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus ATCC 4796] gi|75432899|sp|Q5FJJ7|RNC_LACAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|58254890|gb|AAV43127.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus NCFM] gi|227868234|gb|EEJ75655.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus ATCC 4796] Length = 228 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 10/214 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ + L+ F N LLE+A THSS S+ + + YE+LEFLGD +L L + Sbjct: 1 MVSTKFLNKLKNEYNIEFNNEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ H+ EGEL+ +++V E S+ A E I + + K ++ Sbjct: 61 SNYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARNRKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 DV E+ AL+LD G+ F+ K + + G Sbjct: 121 EDVFEAFNGALFLDQGMPAVERFLHLTVYPLIAKGEFDDSRDYKTDLQELLQQNGPVNIE 180 Query: 176 KVTFRSG--PDHDPRFTVVVEISGLAPAQGMDCS 207 P H F V ++I+ QG + Sbjct: 181 YSVISESQLPSH---FVVELKINDQVQTQGEGHN 211 >gi|323526859|ref|YP_004229012.1| ribonuclease III [Burkholderia sp. CCGE1001] gi|323383861|gb|ADX55952.1| ribonuclease III [Burkholderia sp. CCGE1001] Length = 475 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPSSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG E A T + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|34497521|ref|NP_901736.1| ribonuclease III [Chromobacterium violaceum ATCC 12472] gi|81655793|sp|Q7NWC4|RNC_CHRVO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|34103376|gb|AAQ59738.1| ribonuclease III [Chromobacterium violaceum ATCC 12472] Length = 236 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 65/212 (30%), Positives = 106/212 (50%), Gaps = 8/212 (3%) Query: 1 MSALR--YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 M+ + + L + + YAF LL +ALTH S S + + ER EF+GD IL ++ + Sbjct: 1 MTQIDNRFRRLSQALDYAFQKPELLRQALTHRSYSSA---NNERFEFVGDSILNYTVARM 57 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L++ F EGELS +LV+ T +++A EL L ++ + K SI AD Sbjct: 58 LYDQFPQLTEGELSRLRANLVNQNTLAEIAHELKLGDYLYLGEGELKSGGFNRPSILADA 117 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 +E+ AA+ D A V + + QR + + + +DAKT LQE A+ P+Y+ Sbjct: 118 LEATFAAVSFDADFAAAEQVVRRLYNQRVATIDTTRQAKDAKTRLQEALQARKLALPKYR 177 Query: 177 VTFRSGPDHDPRFTVVVEISGL-APAQGMDCS 207 + +SG H+ F V ++ + + G S Sbjct: 178 ILSQSGEAHEQWFKVECDLGEMALISTGDGGS 209 >gi|268564825|ref|XP_002639240.1| C. briggsae CBR-DRSH-1 protein [Caenorhabditis briggsae] gi|74847096|sp|Q61XX9|RNC_CAEBR RecName: Full=Ribonuclease 3; AltName: Full=Protein drosha; AltName: Full=Ribonuclease III; Short=RNase III gi|187036021|emb|CAP24627.1| CBR-DRSH-1 protein [Caenorhabditis briggsae AF16] Length = 1061 Score = 99.2 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 65/218 (29%), Positives = 100/218 (45%), Gaps = 13/218 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + LE+ IG F N LL KA T + + + +RLE+LGD +L L+IS L+ + Sbjct: 810 DFHRLEQIIGIEFNNIRLLAKAFTRRNVPFNDLTKGHNQRLEWLGDSVLQLIISDYLYRN 869 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG +S+ SLVS +T S V +L F+ + +AD+VE+ Sbjct: 870 FPLHHEGHMSLLRTSLVSNQTQSVVCDDLGFQEFVIKAP---HRKNDLKMKDKADLVEAF 926 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA------HAKFGVTPE 174 I ALY+D G+E +F+ + R + + DAK+ LQ+W PE Sbjct: 927 IGALYVDKGLEYCRSFIRTVFCPRLKHFINSEKWNDAKSHLQQWCLAIRDSRNPNPAMPE 986 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 Y++ GP ++ F V V G + + AE Sbjct: 987 YRLLGIQGPTNNRIFRVAVYFRGERLSSAAASNMHTAE 1024 Score = 54.5 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 48/202 (23%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISH---------------------------- 34 S EK I Y F +R ++E AL HSS Sbjct: 583 NFSLSVFEKVIEYKFNDRRIVELALIHSSFRSYYGTTPDHVKNMISNCGYRKKYGAEERR 642 Query: 35 --------------------SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 ERLE+LGD ++ L+ S LF + EG L+ Sbjct: 643 EKKKGIISLFNIMGGETSGGEPILHNERLEYLGDAVVELIASHHLFFILNHHFEGGLATY 702 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 +LV +++A + ++ + + A+ E+L+A ++LD GI Sbjct: 703 RTALVQNRNLAKLAMNCRIDEMLQFAHGADLINEAEWKHALANAFEALMAGVFLDSGIAP 762 Query: 135 AGTFVDKYWKQRALKSGKFRRD 156 K + + K Sbjct: 763 CDAIFSKAMYGKDPEMKKVWDH 784 >gi|170017643|ref|YP_001728562.1| dsRNA-specific ribonuclease [Leuconostoc citreum KM20] gi|238688973|sp|B1N016|RNC_LEUCK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|169804500|gb|ACA83118.1| dsRNA-specific ribonuclease [Leuconostoc citreum KM20] Length = 233 Score = 99.2 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 7/217 (3%) Query: 1 MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 MS + L F N +LL +ALT + + + + Y+RLEFLGD ++ + + Sbjct: 1 MSQDSFKQYLLSEFNIQFNNETLLLEALTQRNYLNEHPDEPGRDYQRLEFLGDSVMQVSV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + LF + + EG+L+ ++V + + +R L IR+ S+ Sbjct: 61 AEYLFKRYPNWHEGQLTEMRIAMVQTRSFAHFSRVAHLNEGIRLGKGEEMSGARDRDSLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 D+ E+ I ALYLD G E F+D+ R + K G Sbjct: 121 EDIWEAFIGALYLDQGFEAVRKFLDQTLFAAVDTDFFDRFIDFKSRLQEKLQKNGAVDID 180 Query: 176 KVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRA 210 T + F V + A+G S + Sbjct: 181 YRTENEQQLSHNAQLFEASVSVDDHELARGTGKSIKD 217 >gi|225684422|gb|EEH22706.1| dicer [Paracoccidioides brasiliensis Pb03] Length = 1469 Score = 99.2 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 75/233 (32%), Gaps = 16/233 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + R+GY F LL A TH+S + + Y+RLEFLGD +L ++ L++ + Sbjct: 1202 QQIGDRLGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYP 1261 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 L+ ++VS + VA +L L + S + I Sbjct: 1262 DRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLLYFSKALLGQITRYAEEIEATETESID 1321 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + + ++++ E + + + Sbjct: 1322 SPDFWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQQCLKKYFEDMSIYDTFAN 1381 Query: 185 HDP--------------RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P R V I A+G+ S A+ A+ L + Sbjct: 1382 KHPTASGEVDSVDAAEHRVLAAVIIHDEFVAEGIASSAGYAKVKASENALSKL 1434 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 12/93 (12%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT H + ++YERLEFLGD L + S LF Sbjct: 1007 PELALEALTKDSDNTEEHRAEQIHFQRGMGKNYERLEFLGDCFLKMSTSISLFAMNADDD 1066 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 E + V+ L+ + A L + F+R Sbjct: 1067 EFDFHVKRMCLICNQNLFNTAMSLGIYEFVRTQ 1099 >gi|311747672|ref|ZP_07721457.1| ribonuclease III [Algoriphagus sp. PR1] gi|126575659|gb|EAZ79969.1| ribonuclease III [Algoriphagus sp. PR1] Length = 250 Score = 99.2 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 57/212 (26%), Positives = 93/212 (43%), Gaps = 7/212 (3%) Query: 19 NRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 N +L + ALT SS+ + S ERLEFLGD ILG +++ LF + EG L+ Sbjct: 39 NIALYKLALTPSSLGEETSKGFKISNERLEFLGDAILGAVVAEYLFQKYPYRDEGFLTET 98 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 + LV+ E+ + ++ L + + R + + S+ D++E+ + A+YLD G Sbjct: 99 RSKLVNRESLNATGVKIGLKKILNLEIGDRNFIGNK--SLYGDILEAFLGAVYLDKGYHF 156 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWA-HAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 F+ K G + + + + EYK+ G F V + Sbjct: 157 TKKFILKRILLHFDLDGMITTVSNYKSKIIEWSQRENKNIEYKILHVHGNQRFKEFIVAL 216 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 EI G +QG +K+ AEQ A+ I Sbjct: 217 EIDGEEASQGKGPTKKKAEQEASKNACDELNI 248 >gi|161507714|ref|YP_001577671.1| ribonuclease III [Lactobacillus helveticus DPC 4571] gi|260101401|ref|ZP_05751638.1| ribonuclease III [Lactobacillus helveticus DSM 20075] gi|160348703|gb|ABX27377.1| Double stranded RNA-specific ribonuclease RNase [Lactobacillus helveticus DPC 4571] gi|260084741|gb|EEW68861.1| ribonuclease III [Lactobacillus helveticus DSM 20075] gi|323466305|gb|ADX69992.1| Double stranded RNA-specific ribonuclease RNase [Lactobacillus helveticus H10] Length = 228 Score = 99.2 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 55/214 (25%), Positives = 87/214 (40%), Gaps = 10/214 (4%) Query: 1 MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55 M + ++ L+ F N LLE+A THSS S+ + YE+LEFLGD +L L + Sbjct: 1 MVSTKFLKKLKDEYSIEFNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L+ H+ EGEL+ +++V E S+ A E + I + + K ++ Sbjct: 61 SDYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQNEIHLGNGEEKAGARKRKTLL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 DV E+ AL+LD G+ F+ K + + G Sbjct: 121 EDVFEAFNGALFLDQGMPAVQHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVNIE 180 Query: 176 KVTFRSG--PDHDPRFTVVVEISGLAPAQGMDCS 207 P H F V ++I+ QG + Sbjct: 181 YSVISESQLPPH---FVVELKINDQVQTQGEGHN 211 >gi|328905041|gb|AEB54796.1| dicer 2 [Litopenaeus vannamei] Length = 1502 Score = 99.2 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 92/246 (37%), Gaps = 30/246 (12%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFD 64 LEK+IGY F +RS + +A+THSS ++ + Y+RLEFLGD +L L++ +F F Sbjct: 1239 LDRLEKKIGYTFRDRSFIVQAVTHSSYVNNQVTDCYQRLEFLGDAVLDYLVTCHIFCRFT 1298 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99 G+LS + V +T + A + L + Sbjct: 1299 DYSPGQLSDLRSYFVKNDTLGRAAAKGKLHQHLLHLNPKLEASIDKFLSILHQDPLGEEL 1358 Query: 100 --SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 D++ + D+VE++I A+YLD + + L + + Sbjct: 1359 NTEDDVQDCEDVEIPKALGDMVEAIIGAVYLDSNRSLKVAWQVIERILGDLLNTSIQTIQ 1418 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 +++ G V + V V+ G + R A++ AA Sbjct: 1419 LNPIRQLLEEVPGEKQVEFVKGEDDGSEKSTYVVKVK--GFGTFTASGKNYRVAKKKVAA 1476 Query: 218 EVLKRE 223 LK Sbjct: 1477 IALKEI 1482 Score = 41.5 bits (95), Expect = 0.094, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 57/200 (28%), Gaps = 12/200 (6%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 A T S + + ERLE LGD L + LF +S EG LS LV +T Sbjct: 1015 AFTLKEASEDKEFNLERLELLGDSFLKFVTGEALFLRDESYHEGRLSQSRGKLVCNKTLF 1074 Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 ++A + L I K S E + +L + V K Sbjct: 1075 RLACQKGLEGKIAAKVLNPKKNGSIPGFRIKPEFEESLRSLEVPHDF---WHQVPNTVKD 1131 Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + + A+ + T D V I G Sbjct: 1132 VGDLKEAVFALMSDDASKDEKAEKKGSCYNPWTEHEVSDKSIADCVEAIIGAYLLVCG-- 1189 Query: 206 CSKRAAEQVAAAEVLKREGI 225 AAA L G+ Sbjct: 1190 -------NEAAAAFLHWLGV 1202 >gi|78211701|ref|YP_380480.1| RNAse III [Synechococcus sp. CC9605] gi|78196160|gb|ABB33925.1| Ribonuclease III [Synechococcus sp. CC9605] Length = 241 Score = 99.2 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 68/212 (32%), Gaps = 12/212 (5%) Query: 20 RSLLE---KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 LL +A+TH S + ERLEFLGD +L L + + H G S Sbjct: 24 PELLILVDQAMTHVS--SGRDRNLERLEFLGDAVLRLAATEFIDRHHADLTVGACSNLRA 81 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 LVS + V L + + S + + Sbjct: 82 QLVSDRWLADVGEALGIEEHLL--LGRHAQGDRSARSRLRADATEALIGALYTALGNLKA 139 Query: 137 TFVDKYWKQRALKS----GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTV 191 A + KT LQEW+ + P Y S DP RF Sbjct: 140 IHRWLTPHWSATTQAVLATPHQFGGKTTLQEWSQGQGLGLPRYATEECSRQHGDPERFRC 199 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V I G A+ S++ AEQ AA L+ Sbjct: 200 QVSIQGRNLAEAKGRSRKEAEQNAATAALQAL 231 >gi|170695422|ref|ZP_02886567.1| Ribonuclease III [Burkholderia graminis C4D1M] gi|170139613|gb|EDT07796.1| Ribonuclease III [Burkholderia graminis C4D1M] Length = 421 Score = 98.8 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 6/205 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + S LE R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F Sbjct: 1 MPSSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EG+LS +LV ++ ++A+ L+++ +R+ + SI AD +E+++ Sbjct: 58 GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181 A++LDGG + A T + + + +DAKT LQE+ P Y V Sbjct: 118 GAVFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177 Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205 G H+ +F V + L G Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202 >gi|84498322|ref|ZP_00997119.1| ribonuclease III [Janibacter sp. HTCC2649] gi|84381822|gb|EAP97705.1| ribonuclease III [Janibacter sp. HTCC2649] Length = 249 Score = 98.8 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 85/196 (43%), Gaps = 5/196 (2%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + +LL +ALTH S ++ ERLEFLGD +LGL+++ L+ EG+L+ Sbjct: 25 DVALLGRALTHRSYAYEAGGIPHNERLEFLGDSVLGLVVTDSLYVTHPDLTEGQLAKLRA 84 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 ++V+ + V R L L ++ + SI AD VE++I A Y G+ AG Sbjct: 85 AVVNMRALAAVGRTLGLGDYLHLGRGEESTGGRDKDSILADTVEAVIGATYCSAGLVAAG 144 Query: 137 TFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 V S D KT LQE V GP+H F+ V Sbjct: 145 DLVHHLLDPLMASSATLGAGLDWKTSLQEICALHSAGPV-EYVLEEDGPEHSKTFSARVL 203 Query: 195 ISGLAPAQGMDCSKRA 210 + G+ G+ +K+ Sbjct: 204 VGGVEHGSGVGRTKKD 219 >gi|327297344|ref|XP_003233366.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892] gi|326464672|gb|EGD90125.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892] Length = 1519 Score = 98.8 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 34/251 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++ ++GY F LL A H S Y+RLEFLGD +L ++ LF + Sbjct: 1236 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------------- 103 L+ ++VS + +A L+L + S+ Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355 Query: 104 ---RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155 + D+VE+ + A+++D + +++ + F Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFAN 1415 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT---VVVEISGLAPAQGMDCSKRAAE 212 A Y + P D V + A+G+ S R A+ Sbjct: 1416 KHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTVRALAAVCVHDDIVAEGVASSPRHAK 1475 Query: 213 QVAAAEVLKRE 223 A+ L+ Sbjct: 1476 LKASQNALQIL 1486 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT S ++YERLEFLGD L + S LF Sbjct: 1040 PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1099 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 E + V+ L+ + A L++ FIR Sbjct: 1100 EYDYHVKRMLLICNQNLFNNAINLEIFKFIR 1130 >gi|302662009|ref|XP_003022664.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517] gi|291186623|gb|EFE42046.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517] Length = 1510 Score = 98.8 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 34/251 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++ ++GY F LL A H S Y+RLEFLGD +L ++ LF + Sbjct: 1227 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1286 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------------- 103 L+ ++VS + +A L+L + S+ Sbjct: 1287 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1346 Query: 104 ---RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155 + D+VE+ + A+++D + +++ + F Sbjct: 1347 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFAN 1406 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT---VVVEISGLAPAQGMDCSKRAAE 212 A Y + P D V + A+G+ S R A+ Sbjct: 1407 KHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTVRALAAVCVHDDIVAEGVASSPRHAK 1466 Query: 213 QVAAAEVLKRE 223 A+ L+ Sbjct: 1467 LKASQNALQIL 1477 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 16/112 (14%) Query: 1 MSALRYSTLE--KRIGYAFANRSLLEKALTHSS------------ISHSYQESYERLEFL 46 M + LE +++ L +ALT S ++YERLEFL Sbjct: 1012 MESY-LIALEACEKLQLKIP-PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFL 1069 Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 GD L + S LF E + V+ L+ + A L++ FIR Sbjct: 1070 GDCFLKMATSISLFAMNPDNDEYDYHVKRMLLICNQNLFNNAIILEIFKFIR 1121 >gi|302511053|ref|XP_003017478.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371] gi|291181049|gb|EFE36833.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371] Length = 1510 Score = 98.8 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 34/251 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++ ++GY F LL A H S Y+RLEFLGD +L ++ LF + Sbjct: 1227 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1286 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------------- 103 L+ ++VS + +A L+L + S+ Sbjct: 1287 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1346 Query: 104 ---RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155 + D+VE+ + A+++D + +++ + F Sbjct: 1347 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFAN 1406 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT---VVVEISGLAPAQGMDCSKRAAE 212 A Y + P D V + A+G+ S R A+ Sbjct: 1407 KHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTVRALAAVCVHDDIVAEGVASSPRHAK 1466 Query: 213 QVAAAEVLKRE 223 A+ L+ Sbjct: 1467 LKASQNALQIL 1477 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 16/112 (14%) Query: 1 MSALRYSTLE--KRIGYAFANRSLLEKALTHSS------------ISHSYQESYERLEFL 46 M + LE +++ L +ALT S ++YERLEFL Sbjct: 1012 MESY-LIALEACEKLQLKIP-PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFL 1069 Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 GD L + S LF E + V+ L+ + A L++ FIR Sbjct: 1070 GDCFLKMATSISLFAMNPDNDEYDYHVKRMLLICNQNLFNNAIILEIFKFIR 1121 >gi|126655310|ref|ZP_01726749.1| Ribonuclease III [Cyanothece sp. CCY0110] gi|126622789|gb|EAZ93494.1| Ribonuclease III [Cyanothece sp. CCY0110] Length = 240 Score = 98.8 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 8/223 (3%) Query: 3 ALRYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + T +++G + N LL+ ALTH +IS +Y++LEF+GD ++ L+ + +L Sbjct: 9 KKQLETCLQKLGLSDTSVVNLELLDLALTHPTISREN--NYQQLEFVGDSVIRLVSAEIL 66 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--LRKDVCSFMTSIQAD 117 + GE + + LVS T ++ A + L ++ ++ + + Sbjct: 67 LETYPDELVGEFAAIRSILVSDRTLAEFAEQYGLDRYLLMADSVAQDTMGRVSWLADAFE 126 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 V + + + K ++S R++ K LQEW A++ + PEY+V Sbjct: 127 AVLGALYLSTKNMTLVRPWLDPLLLKKAAEIRSDPARQNYKDALQEWTQAQYKILPEYRV 186 Query: 178 TFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T + HD RF V + G SK+ AEQ AA + Sbjct: 187 TEQDKDRGHDERFFAEVSLKDRKLGSGYGRSKKMAEQAAAKDA 229 >gi|326481629|gb|EGE05639.1| hypothetical protein TEQG_04648 [Trichophyton equinum CBS 127.97] Length = 1519 Score = 98.8 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 34/251 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++ ++GY F LL A H S Y+RLEFLGD +L ++ LF + Sbjct: 1236 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------------- 103 L+ ++VS + +A L+L + S+ Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVNLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355 Query: 104 ---RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155 + D+VE+ + A+++D + +++ + F Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDEFFRKFIQHYFEDMSVYDTFAN 1415 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT---VVVEISGLAPAQGMDCSKRAAE 212 A Y + P D V + A+G+ S R A+ Sbjct: 1416 KHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTVRALAAVCVHDDIVAEGVASSPRHAK 1475 Query: 213 QVAAAEVLKRE 223 A+ L+ Sbjct: 1476 LKASQNALQVL 1486 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 16/112 (14%) Query: 1 MSALRYSTLE--KRIGYAFANRSLLEKALTHSS------------ISHSYQESYERLEFL 46 M + LE +++ L +ALT S ++YERLEFL Sbjct: 1021 MESY-LIALEACEKLQLKIP-PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFL 1078 Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 GD L + S LF E + V+ L+ + A L++ FIR Sbjct: 1079 GDCFLKMATSISLFAMNPDNDEYDYHVKRMLLICNQNLFNNAIILEIFKFIR 1130 >gi|326472405|gb|EGD96414.1| dicer [Trichophyton tonsurans CBS 112818] Length = 1519 Score = 98.8 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 34/251 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++ ++GY F LL A H S Y+RLEFLGD +L ++ LF + Sbjct: 1236 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------------- 103 L+ ++VS + +A L+L + S+ Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVNLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355 Query: 104 ---RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155 + D+VE+ + A+++D + +++ + F Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDEFFRKFIQHYFEDMSVYDTFAN 1415 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT---VVVEISGLAPAQGMDCSKRAAE 212 A Y + P D V + A+G+ S R A+ Sbjct: 1416 KHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTVRALAAVCVHDDIVAEGVASSPRHAK 1475 Query: 213 QVAAAEVLKRE 223 A+ L+ Sbjct: 1476 LKASQNALQVL 1486 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 16/112 (14%) Query: 1 MSALRYSTLE--KRIGYAFANRSLLEKALTHSS------------ISHSYQESYERLEFL 46 M + LE +++ L +ALT S ++YERLEFL Sbjct: 1021 MESY-LIALEACEKLQLKIP-PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFL 1078 Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 GD L + S LF E + V+ L+ + A L++ FIR Sbjct: 1079 GDCFLKMATSISLFAMNPDNDEYDYHVKRMLLICNQNLFNNAIILEIFKFIR 1130 >gi|72059370|ref|XP_790894.1| PREDICTED: similar to Dicer protein [Strongylocentrotus purpuratus] gi|115954873|ref|XP_001197815.1| PREDICTED: similar to Dicer protein [Strongylocentrotus purpuratus] Length = 1850 Score = 98.5 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 92/254 (36%), Gaps = 39/254 (15%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y EK I Y F +R+ L +A THSS +S + Y+RLEFLGD +L LI+ L++H Sbjct: 1596 YDGFEKTINYRFRDRAYLLQAFTHSSYHRNSITDCYQRLEFLGDALLDYLITRHLYDHHT 1655 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111 + G L+ ++LV+ + +A + + + + + V Sbjct: 1656 NLSPGALTDLRSALVNNTIFASLAVKFNFHKYFKAYTANMFQVIDNFVTFVDAKNEALGM 1715 Query: 112 ---------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 D+ ES+ A+YLD G+ + + Y + Sbjct: 1716 DSQLKYSEMDGEQEESEDIEVPKALGDIFESVAGAIYLDSGMSLNAVWKVYYPMMKQQIE 1775 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + ++E + D + V V + G +G+ + Sbjct: 1776 QYASDLPISPVRELLEMEPETARFGPPEKTI----DGKTRVTVNVVGKGQFKGIGRNYHI 1831 Query: 211 AEQVAAAEVLKREG 224 A+ AA L+ Sbjct: 1832 AKATAARFALRHLK 1845 >gi|294054381|ref|YP_003548039.1| ribonuclease III [Coraliomargarita akajimensis DSM 45221] gi|293613714|gb|ADE53869.1| ribonuclease III [Coraliomargarita akajimensis DSM 45221] Length = 228 Score = 98.5 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 62/208 (29%), Positives = 92/208 (44%), Gaps = 5/208 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 +TL +I ++F + SLLE AL H S+ E +RLEFLGD +L L+I+ L+ Sbjct: 1 MRTNLTTLADKIDHSFTDHSLLEMALKHPSLD-IGVEDNQRLEFLGDAVLDLVIAEYLYQ 59 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 HF S +EG L R SLVS + + A EL L + + VS R + D +E+ Sbjct: 60 HFPSEEEGRLDRRRASLVSGKALAPKALELGLNTVLVVSEAQRTHHPEPSKGMLEDALEA 119 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ----EWAHAKFGVTPEYKV 177 LI A+YLD G++ A + + + + G P+Y + Sbjct: 120 LIGAIYLDAGLDAARRSIRHIFAPELAAMAEGSPHDSRAKNRLQEWTQKHRQGAQPKYAL 179 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMD 205 GPDH + V V + G Sbjct: 180 IGSEGPDHARVYHVSVSLDDEELGTGSG 207 >gi|172038048|ref|YP_001804549.1| ribonuclease III [Cyanothece sp. ATCC 51142] gi|171699502|gb|ACB52483.1| ribonuclease III [Cyanothece sp. ATCC 51142] Length = 242 Score = 98.5 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 8/223 (3%) Query: 3 ALRYSTLEKRIGY---AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + T +++G + N LL+ ALTH +IS +Y++LEF+GD ++ L+ + +L Sbjct: 11 KKQLETCLQKLGVWDTSVVNLELLDLALTHPTISRET--NYQQLEFVGDSVIRLVSAEIL 68 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--LRKDVCSFMTSIQAD 117 + GE + + LVS T ++ A + L ++ ++ + + Sbjct: 69 LETYPDELVGEFAAIRSILVSDRTLAEFAEQYGLDRYLLMADSVAQDTMGRVSWLADAFE 128 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 V + + + K ++S R++ K LQEW A++ + P+Y+V Sbjct: 129 AVLGALYLSTKNMTLVRPWLDPLLLKKAAEIRSDPARQNYKDALQEWTQAQYKILPDYRV 188 Query: 178 TF-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T HD RF V + G SK+ AEQ AA + Sbjct: 189 TEQHKDRGHDERFFAEVSLKDRKLGSGYGRSKKMAEQAAAKDA 231 >gi|255733032|ref|XP_002551439.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240131180|gb|EER30741.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 623 Score = 98.5 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 53/238 (22%), Positives = 95/238 (39%), Gaps = 18/238 (7%) Query: 2 SALRYSTLEKRIGY--AFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRI 50 S + ++ + + L E+ TH S ++ ERLEFLGD I Sbjct: 233 SNINIKGIKNNLPELPKINDNKLFERVFTHKSFVNNKNYLNNSELLKLHNERLEFLGDSI 292 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 L L++ ++F F++ EGELS SL+ +T + A E + ++ + ++ + S Sbjct: 293 LNNLVTLIIFKEFNNCNEGELSKIRASLICNKTLLKFAYEYGFDTRLKSFIN-KEAIKSG 351 Query: 111 MTSIQADVVESLIAALYLDGG------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW 164 I ADV E+ I AL ++ G + + + K D + + + Sbjct: 352 DQKIYADVFEAYIGALGIERGNDLKEVQDWLIKLFEPLIFELKKDLNKEPLDNNAKSELY 411 Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + G + +F V ++G +G++ S + A AA E LK Sbjct: 412 SLIGRTDMHPQYKVIEEGDGVEKKFIVSCMMNGEEIGKGVEKSIKDAGIRAAMEALKN 469 >gi|256824933|ref|YP_003148893.1| RNAse III [Kytococcus sedentarius DSM 20547] gi|256688326|gb|ACV06128.1| RNAse III [Kytococcus sedentarius DSM 20547] Length = 228 Score = 98.5 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 89/204 (43%), Gaps = 4/204 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + LE+ +G + LL +A+TH S S+ + ERLEFLGD +LGL+++ L+ Sbjct: 6 ARLEEVVGV-PVDADLLLQAVTHRSFSYENDDAPHNERLEFLGDSVLGLVVTNHLYRANP 64 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EGEL+ +++VSA A LDL + R+ SI AD VE++I Sbjct: 65 DLPEGELAKLRSAVVSARALGGEAGRLDLGDYFRLGRGEENSGGRAKNSILADGVEAVIG 124 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 A+YL G++ A T V + +S + + G+ SGP Sbjct: 125 AVYLSSGLDAATTVVHHLLDELMEQSQTMGAALDWKTSLQELGSARGLGLPEYRITDSGP 184 Query: 184 DHDPRFTVVVEISGLAPAQGMDCS 207 DH F + G G + Sbjct: 185 DHAKLFEATAVLGGEEAGTGSGPT 208 >gi|226294068|gb|EEH49488.1| Dicer [Paracoccidioides brasiliensis Pb18] Length = 1423 Score = 98.1 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 75/233 (32%), Gaps = 16/233 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + R+GY F LL A TH+S + + Y+RLEFLGD +L ++ L++ + Sbjct: 1141 QQIGDRLGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYP 1200 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 L+ ++VS + VA +L L + S + I Sbjct: 1201 DRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLLYFSKALLGQITRYAEEIEATETESID 1260 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + + ++++ E + + + Sbjct: 1261 SPDFWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQQCLKKYFEDMSIYDTFAN 1320 Query: 185 HDP--------------RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P R V I A+G+ S A+ A+ L + Sbjct: 1321 KHPTASGEVDSVDAAEHRVLAAVIIHDEFVAEGIASSAGYAKVKASENALAKL 1373 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 12/93 (12%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT H + ++YERLEFLGD L + S LF Sbjct: 946 PELALEALTKDSDNTEEHRAEQIHFQRGMGKNYERLEFLGDCFLKMSTSISLFAMNADDD 1005 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 E + V+ L+ + A L + F+R Sbjct: 1006 EFDFHVKRMCLICNQNLFNTAMSLGIYEFVRTQ 1038 >gi|296424770|ref|XP_002841919.1| hypothetical protein [Tuber melanosporum Mel28] gi|295638171|emb|CAZ86110.1| unnamed protein product [Tuber melanosporum] Length = 1402 Score = 98.1 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 79/248 (31%), Gaps = 31/248 (12%) Query: 7 STLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E+ +GY F + LL ALTH S + SY+RLEFLGD +L L+ +F + Sbjct: 1122 EDIEELVGYKFKHPRLLISALTHPSLPFTWDRVPSYQRLEFLGDAVLDLVCVRYMFQKYP 1181 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111 A L+ ++VS + VA E+ +R + Sbjct: 1182 HADPQWLTEHKMAMVSNKFLGMVAVEMGFHRKLRRMGSVLDHAIREYEVDIQDAKANSNG 1241 Query: 112 -----------TSIQADVVESLIAALYLDGGIEVAGT----FVDKYWKQRALKSGKFRRD 156 DV+E+ I A+++D G + + Sbjct: 1242 AVDFWTSLKAPPKALPDVLEAFIGAVFVDSGFQYNIVERLVNTFILPYFVDMTVFDNFAG 1301 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT-VVVEISGLAPAQGMDCSKRAAEQVA 215 + + + + + + + G S +AA A Sbjct: 1302 QHPTTYITKFMDDLNCEFWGFESQQCMTGNMTYILTAIVVHREIFSYGSGVSVKAARVEA 1361 Query: 216 AAEVLKRE 223 + +++ Sbjct: 1362 SLAAIQKL 1369 Score = 41.5 bits (95), Expect = 0.083, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 6/77 (7%) Query: 28 THS------SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 TH S+ +YERLEFLGD L L S L+ + + E EL V+ L+ Sbjct: 942 THEHGSAQVSLQRGMGSNYERLEFLGDCFLKLATSLSLYTAYHADDECELHVKRMVLICN 1001 Query: 82 ETCSQVARELDLASFIR 98 A+E+ + +I+ Sbjct: 1002 RYLFTKAKEMKIPEYIQ 1018 >gi|67923480|ref|ZP_00516956.1| Ribonuclease III [Crocosphaera watsonii WH 8501] gi|67854668|gb|EAM49951.1| Ribonuclease III [Crocosphaera watsonii WH 8501] Length = 238 Score = 98.1 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 88/223 (39%), Gaps = 8/223 (3%) Query: 3 ALRYSTLEKRIGYAFA---NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + T +++G + + + LL+ ALTH +IS +Y++LEF+GD ++ L+ + +L Sbjct: 9 KKQLETCLQKLGVSNSLSVDLKLLDLALTHPTISKEN--NYQQLEFVGDSVVRLVSAEIL 66 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + GE + + LVS T ++ A L ++ + + +D ++ + Sbjct: 67 LETYPNELVGEFAAIRSILVSDRTLAEFADNYGLDRYLLMIDSVAQDKIGRVSWLADTFE 126 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL---QEWAHAKFGVTPEYK 176 L A + + ++D Q+A + + + + Sbjct: 127 AVLGALYLSTQNMTLIRPWLDPLLLQKAAEIRSDPARQNYKDALQEWTQGQYKILPDYRV 186 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 H RF V + G SK+ AEQ AA + Sbjct: 187 AEQHQNRGHHQRFFAEVWLKDRQLGSGYGRSKKMAEQAAAKDA 229 >gi|326334475|ref|ZP_08200686.1| ribonuclease 3 [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693244|gb|EGD35172.1| ribonuclease 3 [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 255 Score = 98.1 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 82/221 (37%), Gaps = 4/221 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALT---HSSISHSYQESYERLEFLGDRILGLLISTL 58 + + +EK +G+ E+A T + S + SYERLEFLGD ILG +I+ Sbjct: 15 DGIFFIEMEKLLGFPPKEIRYYEEAFTLGSNRSQDLGHPISYERLEFLGDAILGAVIAHF 74 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 +F + EG+L+ +V + +Q+ EL L +++ + ++ + Sbjct: 75 VFLQAPNKDEGDLTKMRTRMVRRDNLNQIGEELQLREYLQTERKSLLLSGNISGNLLEAL 134 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 V ++ E + K K+ + EWA Sbjct: 135 VGAIYLDRGYQKATEFIHRILIDANLSMKDLENKVI-SYKSLMVEWAQKYHKTIAFIAEE 193 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + F V I+ + D SK+ AE+ AA Sbjct: 194 DPTYKGKIKYFQARVMINDKVYTKAHDTSKKKAEERAAKRA 234 >gi|168039663|ref|XP_001772316.1| predicted protein [Physcomitrella patens subsp. patens] gi|162676303|gb|EDQ62787.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1275 Score = 98.1 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 85/242 (35%), Gaps = 24/242 (9%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH-- 62 + S LE + Y F N+ LL +ALTH+S + Y+RLEFLGD +L LI+ + + Sbjct: 698 KVSELEILLNYKFQNKGLLVEALTHASCRRHSGDCYQRLEFLGDAVLDFLITKHFYANSA 757 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS-----IQAD 117 G L+ ++ V+ E ++VA +L ++ +S Q Sbjct: 758 NLKRDPGLLTDLRSAAVNNECFARVAVRHNLHLYLLHNSSDLAARVDKYVHGSTTDAQCH 817 Query: 118 VVESLIAALYLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 L +E A Y K E Sbjct: 818 GWNGDSGPKVLSDLVESLAGAVFLDSGYKLDTVWNVFKQLLKPLVTPATLRLEPIRELWE 877 Query: 175 YKVTFRSGPDHDPR-------F--TVVVEISGLAPAQGMDCSK---RAAEQVAAAEVLKR 222 T + G + + F TV VE+ G+ K ++A +VAA + L+ Sbjct: 878 LCQTEKFGEPNYKKKREAMGDFDMTVTVELKDETI-TGVGR-KPDEKSARKVAAIQALET 935 Query: 223 EG 224 Sbjct: 936 LK 937 >gi|171690380|ref|XP_001910115.1| hypothetical protein [Podospora anserina S mat+] gi|170945138|emb|CAP71249.1| unnamed protein product [Podospora anserina S mat+] Length = 1568 Score = 98.1 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 86/269 (31%), Gaps = 52/269 (19%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 KR+GY F LL A H + S SY+RLEFLGD +L + LF+ F Sbjct: 1258 EKFHKRMGYRFQYPRLLRSAFQHPTYPTSWEKLPSYQRLEFLGDALLDMACIDHLFHRFP 1317 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102 A L+ ++VS + +A + ++ SS Sbjct: 1318 GADPQWLTEHKMAMVSNQFLGCLAVYIGFHRSLQHSSPAVQSEIASYVTEIEEALAAAKA 1377 Query: 103 --------------LRKDVCSFMTSIQADVVESLIAALYLDGGIEV------AGTFVDKY 142 CS D +E+ + A+++D + + + Sbjct: 1378 AAVQEGKSESNFARDFWVDCSRPPKCLPDTIEAYVGAIFVDSSYDYQTVQDFFDKHIQFW 1437 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT--------FRSGPDHDPRFTVVVE 194 ++ L + T L +F +T G + + V Sbjct: 1438 FEDMRLYDTFANKHPVTFLGHEMQHRFRCQEWRLLTREIMVDKDEEGGMMGEKQVVCAVM 1497 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + G A + S R ++ AA + L+ Sbjct: 1498 VHGQKLAHAVAQSARYSKIGAAKKALREL 1526 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 13/100 (13%) Query: 13 IGYAFANRSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLF 60 +G L +A T S +YERLEFLGD L + + ++ Sbjct: 1059 LGLNIR-PDLALEAFTKDSDNTDEQDVEQVNFQRGMGNNYERLEFLGDAFLKMATTIAIY 1117 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 E E V L+ A E+ L +IR Sbjct: 1118 TLIPDKDEFEYHVERMVLICNRNLFNNALEVKLEEYIRSM 1157 >gi|325203773|gb|ADY99226.1| ribonuclease III [Neisseria meningitidis M01-240355] Length = 239 Score = 98.1 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 12 AAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPKL 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 69 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + R +D KT LQE A+ P+Y++ + G Sbjct: 129 SFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 188 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 +D F V ++ L + S+ Sbjct: 189 NDSMFVVSCDLGELGFVCRAKGTSR 213 >gi|269115244|ref|YP_003303007.1| dsRNA-specific ribonuclease III [Mycoplasma hominis] gi|268322869|emb|CAX37604.1| dsRNA-specific ribonuclease III [Mycoplasma hominis ATCC 23114] Length = 231 Score = 98.1 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 93/233 (39%), Gaps = 16/233 (6%) Query: 2 SALRYST-LEKRI---GYAFAN-----RSLLEKALTHSSISHSYQ--ESYERLEFLGDRI 50 + + L+ + G F R A THSS S+ ++ ESY+ LEFLGD + Sbjct: 1 MKINFEENLQNALLKFGINFQKLDEQKRRYFCNAFTHSSYSNEHKNLESYQYLEFLGDSV 60 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 LG ++S +F+++ + EG+ + + +V +++ + +R + Sbjct: 61 LGFVVSDFIFDNYKNFGEGKATKLKSEIVDKNALGFLSKYYGFPNCLRTGKSAFANG--K 118 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 +D++ES I A Y G++ + + + K + + Sbjct: 119 GIKSDSDLIESFIGACYKACGLKFTKEIIYHFIDKILKKFHNSINEHPKTKLQELVQSNW 178 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ +F V I+ +G+ SK+ ++ AA++ LK+ Sbjct: 179 GCRPRYEDQAL---NNGKFESKVFINNNLYGEGIGQSKKESQTKAASDALKKM 228 >gi|240247227|emb|CAX68236.1| dicer-1 [Blattella germanica] Length = 2271 Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 91/246 (36%), Gaps = 35/246 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E+RI Y F +RS L ++LTH+S S + + Y+RLEFLGD +L LI+ L+ Sbjct: 2015 YDVFERRIRYKFRDRSYLLQSLTHASYSPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 2074 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99 G L+ ++LV+ + +A + R Sbjct: 2075 QHSPGALTDLRSALVNNTIFASLAVRYGFHKYFRHLSPGLNEVVDRFVRIQEENGHTISE 2134 Query: 100 ------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 + + + DV ES+ A++LD G+ + + Y ++ Sbjct: 2135 EYYLIEEEECEEAEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWRVYYRMMKSEIEQFS 2194 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 K+ ++E K R V VE+ G +G+ + R A+ Sbjct: 2195 TNVPKSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVEVFGKGTFKGIGRNYRIAKC 2251 Query: 214 VAAAEV 219 AA Sbjct: 2252 TAAKCA 2257 Score = 40.3 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +D+ EG+LS + V Sbjct: 1726 PSVILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQV 1783 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 S ++ R + + D +E Sbjct: 1784 SNLNLYRLGRRKVFGESMIATKFEPHDNWLPPCYYVPRELE 1824 >gi|242763899|ref|XP_002340666.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500] gi|218723862|gb|EED23279.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500] Length = 1494 Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 85/249 (34%), Gaps = 33/249 (13%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65 +E ++GY F LL A TH S ++ Y+RLEFLGD +L ++ L+ F Sbjct: 1208 QVEMKLGYCFQYPKLLRSAFTHPSYPSAWSTVPCYQRLEFLGDSLLDMVCVEDLYERFPD 1267 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---------------------- 103 L+ ++VS + +A L L + ++ S+ Sbjct: 1268 RDPQWLTEHKMAMVSNKFLGSLAVRLSLHTHLQYFSNPLQAQIARAVQDSQLAYDSHQTV 1327 Query: 104 -RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK-----YWKQRALKSGKFRRDA 157 +D+VE+ + A+++D G + + + F Sbjct: 1328 DFWLHTDDPPKCLSDMVEAYLGAIFVDSGFDFGVIESFYAKHIKPYFEDMALYDTFANKH 1387 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHD---PRFTVVVEISGLAPAQGMDCSKRAAEQV 214 T +Y + P D P V + + AQG S R A+ Sbjct: 1388 PTTFLHRKLTDDFGCIQYTLRAAEIPSVDGAPPVVLAAVLVHDVVLAQGTASSGRYAKIK 1447 Query: 215 AAAEVLKRE 223 A+ +K Sbjct: 1448 ASEVAMKNL 1456 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 32/82 (39%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 ++YERLEFLGD L + S LF + +E + V +L+ A + Sbjct: 1037 FQRGMGKNYERLEFLGDCFLKMATSISLFVESPNDQEYDFHVNRMTLICNRNLFNTAIQR 1096 Query: 92 DLASFIRVSSDLRKDVCSFMTS 113 + IR R++ Sbjct: 1097 KIYEHIRSKGFSRRNWYPDGMK 1118 >gi|124265843|ref|YP_001019847.1| ribonuclease III [Methylibium petroleiphilum PM1] gi|124258618|gb|ABM93612.1| Ribonuclease III [Methylibium petroleiphilum PM1] Length = 248 Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 77/205 (37%), Positives = 111/205 (54%), Gaps = 6/205 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +L+ R+G+ FA LL +ALTH S ++ ERLEFLGD +L IS LLF HF Sbjct: 23 FDSLQVRLGHRFAQVGLLGRALTHKSFG---ADNNERLEFLGDAVLSAAISGLLFEHFGQ 79 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + EG+L+ LV E ++A +L L + +R+S + + SI AD VE+LIAA Sbjct: 80 SGEGDLTRVRAHLVREEMLHRLALDLGLPALLRLSEGEARSGGARRPSILADAVEALIAA 139 Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YLDGG A V++ + + + + RD KTELQEW A+ P Y++ G Sbjct: 140 VYLDGGFASAQALVERLFTPLVASTAAEAWTRDPKTELQEWLQARRQPVPGYRIESTRGR 199 Query: 184 DHDPRFTVVVEISGLAP-AQGMDCS 207 H+ FTVV I + +G S Sbjct: 200 QHEQMFTVVCSIPSRSLEVRGEGRS 224 >gi|57236094|gb|AAW48724.1| dicer-1 [Aedes aegypti] Length = 2192 Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 87/248 (35%), Gaps = 30/248 (12%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 YS E +GY +RS L +A+TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1937 YSAFEDSLGYH-HSRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A D + R S DV IQ D + Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHIISE 2055 Query: 125 ALYLDGGIEVA---------------------GTFVDKYWKQRALKSGKFRRDAKTELQE 163 YL E K + + E Sbjct: 2056 EYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMSLDAVWKVYRSMMGPEIEQFS 2115 Query: 164 WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + K + T + G R V VE+ G +G+ + R A+ AA Sbjct: 2116 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGTFRGIGRNYRIAKCTAA 2175 Query: 217 AEVLKREG 224 L++ Sbjct: 2176 KCALRQLK 2183 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1654 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYENVHEGKLSHLRSKQV 1711 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 S ++ R L + + D +E Sbjct: 1712 SNLNLYRLGRRKVLGESMIATKFEPHDNWLPPCYYVPKELE 1752 >gi|240255863|ref|NP_680697.4| ATRTL1 (ARABIDOPSIS THALIANA RNASEIII-LIKE 1); RNA binding / ribonuclease III [Arabidopsis thaliana] gi|332658200|gb|AEE83600.1| protein RNAse II-like 1 [Arabidopsis thaliana] Length = 264 Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 83/237 (35%), Gaps = 25/237 (10%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +LEK + Y F ++SLL KA T +S ESYE LE LGD IL + I + Sbjct: 27 MEIESLEKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLY 86 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-----------------SSDLRKD 106 G L+ V E ++VA L S++R L + Sbjct: 87 PKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAMEKYPLHSN 146 Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 + + AD+VES I A+++D V K + + K + TEL E Sbjct: 147 GLLKVPKVLADIVESTIGAIFMDCNSTETVWKVIKPLLEPIIHLDKMKSHPMTELNEMCQ 206 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVLKR 222 + + T I G K+ A AA + Sbjct: 207 KRNLKLTSKDTWEENQ-------TYCFHIEDKFVGCGHHPVKKETARNFAAKNAIDN 256 >gi|283769480|ref|ZP_06342376.1| ribonuclease III [Bulleidia extructa W1219] gi|283103748|gb|EFC05134.1| ribonuclease III [Bulleidia extructa W1219] Length = 226 Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 8/210 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFN 61 + G + L+E+ALTHSS ++ + + ERLEF+GD +L L S ++ Sbjct: 1 MDIHNFLTAQGIKVDHFELIEQALTHSSYANEHGSKADNERLEFMGDAVLQLWSSAQIYP 60 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG+++ + LV + +R+L L +IR+ +I AD +E+ Sbjct: 61 LNL--SEGQMTRLRSQLVCESALANYSRQLGLNQYIRLGKGEEHSGGREKDAIIADALEA 118 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFGVTPEYKV 177 + AL+LD G+ + + ++ + + D KT LQE A + Y++ Sbjct: 119 FLGALFLDQGMLAVDLILRQVITPHLQQAKEIVQGVQLDYKTRLQEVVQADSRRSLVYQL 178 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 GP + P F + + GL G S Sbjct: 179 VSEKGPSNAPTFMMNAVVDGLVLGTGSGGS 208 >gi|212723814|ref|NP_001131630.1| hypothetical protein LOC100192986 [Zea mays] gi|194692090|gb|ACF80129.1| unknown [Zea mays] Length = 365 Score = 97.3 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 91/244 (37%), Gaps = 26/244 (10%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62 + +LE + Y+F + SLL +ALTH S Y+RLEFLGD +L + + ++ Sbjct: 110 INVKSLELLLDYSFNDPSLLMEALTHGSYQIAGTTPCYQRLEFLGDAVLDHIFTDYFYHQ 169 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS---------------------S 101 + L+ ++ V+ + A + L + S Sbjct: 170 YPECTPELLTDLRSASVNNSCYAHAAVKAGLHKHVLHSSSALHKRMADYLDKFEQSFSGP 229 Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 + + + DVVES+ A+Y+D + + L + ++ + Sbjct: 230 SHGWEAGISLPKVLGDVVESIAGAIYIDAKHDKGVVWRSMKRILEPLVTPDTLQNDPVKE 289 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220 + G T EY VT +G V G A SK A+++AA+ VL Sbjct: 290 LQEFCDSKGYTLEYTVTRDNGVS---SVVAEVRTEGTTYKATRTGFSKLDAKKLAASSVL 346 Query: 221 KREG 224 + Sbjct: 347 RDLK 350 >gi|154301554|ref|XP_001551189.1| hypothetical protein BC1G_10104 [Botryotinia fuckeliana B05.10] gi|150855766|gb|EDN30958.1| hypothetical protein BC1G_10104 [Botryotinia fuckeliana B05.10] Length = 1842 Score = 97.3 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 72/255 (28%), Gaps = 46/255 (18%) Query: 15 YAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 Y F + LL A H + + Y+RLEFLGD +L + LF++ + L+ Sbjct: 1545 YHFKHPRLLRSAFIHPAYLFIYEQIPCYQRLEFLGDSLLDMACVNFLFHNHPTKDPQWLT 1604 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDL----------------------------- 103 ++VS + + +L + Sbjct: 1605 EHKMAIVSNQFLGALCVKLGFHKHLLTLDSQVQKMIADYSSDINEALIQAKTDAKRVGKV 1664 Query: 104 -------RKDVCSFMTSIQADVVESLIAALYLDGGIEV------AGTFVDKYWKQRALKS 150 D+VE+ I A+++D + + Y++ + Sbjct: 1665 EDDYARDYWIAVRQPPKCLPDIVEAFIGAIFVDSEYDYGEVEKFFEMHIRWYFEDMGIYD 1724 Query: 151 GKFRRDAKTELQEWAHAKFGVTPE-YKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSK 208 + T L + G G D V I + S Sbjct: 1725 TYANKHPTTFLTNFLQKNMGCEDWAPVSKEVPGEDGRKNVVVCGVIIHNKVVSTATAESM 1784 Query: 209 RAAEQVAAAEVLKRE 223 R A AA L++ Sbjct: 1785 RYARVGAARNALRKL 1799 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 12/91 (13%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +A+T S +YERLEFLGD L + S L+ + Sbjct: 1344 PDLALEAVTKDSDNSGEHGEEQTNFQRGMGNNYERLEFLGDCFLKMGTSISLYGLNPDSD 1403 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 E V L+ + A +L+L +IR Sbjct: 1404 EFRYHVDRMCLICNKNLFNTALKLELYKYIR 1434 >gi|269838233|ref|YP_003320461.1| ribonuclease III [Sphaerobacter thermophilus DSM 20745] gi|269787496|gb|ACZ39639.1| ribonuclease III [Sphaerobacter thermophilus DSM 20745] Length = 259 Score = 97.3 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 68/209 (32%), Positives = 95/209 (45%), Gaps = 10/209 (4%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSY--------QESYERLEFLGDRILGLLISTLLFNH 62 +R+G F + LL ALTH S + ++S ERLEFLGD +LG++ + L+ Sbjct: 24 QRLGIEFRDLDLLRLALTHRSYLNELGISQIEAVRDSNERLEFLGDSVLGMITAEFLYRR 83 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L+ +LV ET ++ AR L + + I A E++ Sbjct: 84 FPRLPEGMLTAYRTALVRTETLARWARRFGLDELLYLGRGEITADGEIRDRILAGAFEAV 143 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFR 180 IAA+YLD GI F+ + + A + + K LQE VTP Y+ Sbjct: 144 IAAIYLDRGIRATRRFLRQLLIEDAEQIITEGQETNYKGRLQELVQEHMRVTPMYRTVAV 203 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SGP HD FTV V + G G SKR Sbjct: 204 SGPAHDRVFTVEVVVGGECLGVGTGSSKR 232 >gi|255037664|ref|YP_003088285.1| ribonuclease III [Dyadobacter fermentans DSM 18053] gi|254950420|gb|ACT95120.1| ribonuclease III [Dyadobacter fermentans DSM 18053] Length = 248 Score = 97.3 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 8/219 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTLLFN 61 ++ IG +N + + A H+S S ++ES ERLE+LGD +LG++++ LF Sbjct: 25 ESIAHVIGDKPSNLGVYQLAFRHTSASRETAIKGFRESNERLEYLGDAVLGMVVAEFLFT 84 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG L+ + +V+ E+ +Q++R+L L + D + S +S+ D +E+ Sbjct: 85 KYPYKDEGFLTEIRSRIVNRESLNQISRKLGLD--RLIEYDGNRRGMSPRSSMYGDALEA 142 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT-FR 180 + A+YLD G TF+ + + + A+ Sbjct: 143 FVGAIYLDKGFRFTRTFIISKLITHYDLDSIIQNNVNFKSLIIEWAQREGKEIRFEILEE 202 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 G H F + ++ A G +K+ AEQ A+ + Sbjct: 203 RGTRHHREFISQILVNDEPFAIGNGFTKKKAEQSASEQA 241 >gi|325129784|gb|EGC52592.1| ribonuclease III [Neisseria meningitidis OX99.30304] gi|325133799|gb|EGC56455.1| ribonuclease III [Neisseria meningitidis M13399] gi|325135722|gb|EGC58334.1| ribonuclease III [Neisseria meningitidis M0579] gi|325141941|gb|EGC64381.1| ribonuclease III [Neisseria meningitidis 961-5945] gi|325143926|gb|EGC66236.1| ribonuclease III [Neisseria meningitidis M01-240013] gi|325197906|gb|ADY93362.1| ribonuclease III [Neisseria meningitidis G2136] gi|325202518|gb|ADY97972.1| ribonuclease III [Neisseria meningitidis M01-240149] gi|325206470|gb|ADZ01923.1| ribonuclease III [Neisseria meningitidis M04-240196] gi|325207732|gb|ADZ03184.1| ribonuclease III [Neisseria meningitidis NZ-05/33] Length = 239 Score = 97.3 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++KR+GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 12 AAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPKL 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 69 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + R +D KT LQE A+ P+Y++ + G Sbjct: 129 SFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 188 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 +D F V ++ L + S+ Sbjct: 189 NDSMFVVSCDLGELGFVCRAKGTSR 213 >gi|167570687|ref|ZP_02363561.1| ribonuclease III [Burkholderia oklahomensis C6786] Length = 454 Score = 97.3 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A++LD Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGL-APAQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDVKVSGSG 197 >gi|167563529|ref|ZP_02356445.1| ribonuclease III [Burkholderia oklahomensis EO147] Length = 293 Score = 97.3 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A++LD Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGL-APAQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDVKVSGSG 197 >gi|257138458|ref|ZP_05586720.1| ribonuclease III [Burkholderia thailandensis E264] Length = 464 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A++LD Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGLAP-AQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDIKVSGSG 197 >gi|167619235|ref|ZP_02387866.1| ribonuclease III [Burkholderia thailandensis Bt4] Length = 434 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A++LD Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGLAP-AQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDIKVSGSG 197 >gi|167581151|ref|ZP_02374025.1| ribonuclease III [Burkholderia thailandensis TXDOH] Length = 464 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A++LD Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGLAP-AQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDIKVSGSG 197 >gi|325529480|gb|EGD06389.1| ribonuclease III [Burkholderia sp. TJI49] Length = 279 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A++LD Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGL-APAQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDVKVSGSG 197 >gi|167837348|ref|ZP_02464231.1| ribonuclease III [Burkholderia thailandensis MSMB43] Length = 452 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 63/199 (31%), Positives = 96/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFGKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A+++D Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFVD 118 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGLAP-AQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDIKVSGSG 197 >gi|33864214|ref|NP_895774.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9313] gi|33635798|emb|CAE22123.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9313] Length = 281 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 5/213 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G +++++ALTH+S ++ERLEFLGD +L L S + HF GE S Sbjct: 45 GTEPRGLAVIDEALTHTSAQEII--NHERLEFLGDAVLRLAASEYIDRHFPRMNVGERSA 102 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 LVS ++V + + + S + + D + T + A +E Sbjct: 103 LRAHLVSDRWLAEVGQRIGIESVLIIGPMAAGDASAKPTLQAEATEALIGALYECWQSLE 162 Query: 134 VAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFT 190 ++ +W++ + + R ++K+ LQEW+ A+ P Y+ RS DP R+ Sbjct: 163 PIHRWLTPHWQEASSAVLTDPHRLNSKSALQEWSQARGLGLPRYECAERSKQHGDPQRYV 222 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + +G S+R AEQ AA L+ Sbjct: 223 CQVHLDDRPIGEGWGGSRRNAEQEAARRSLQAL 255 >gi|78183763|ref|YP_376197.1| ribonuclease III [Synechococcus sp. CC9902] gi|78168057|gb|ABB25154.1| RNAse III [Synechococcus sp. CC9902] Length = 249 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 13/234 (5%) Query: 1 MSAL---RYSTLEKRIGYAFAN----RSLLEKALTHSSISHSYQESYERLEFLGDRILGL 53 M + + L + IG N SL+++AL H S +++ERLEFLGD +L L Sbjct: 1 MDSTRTNKLLELLQTIGLQELNSSKLLSLVDEALIHVSA--GRSKNFERLEFLGDAVLRL 58 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---VSSDLRKDVCSF 110 + + + + G S LVS +Q+ +L L SF+ + + Sbjct: 59 AATEFIDQQYPNLPVGRCSSLRAQLVSDRWLAQLGEQLQLESFLVLGPKALGDAAAQATL 118 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 ++ ++ + + + + + KT LQEW+ A+ Sbjct: 119 QADATEALIGAIYSGSGNNLEPIHHWLTPHWQQTTADVLARPHLFNGKTMLQEWSQAEGL 178 Query: 171 VTPEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P Y T +S DP RF VE+ A G S++ AEQ AA E ++R Sbjct: 179 GLPNYTTTEQSSRHGDPERFKSRVEVGSRLSANGFGRSRKEAEQNAATEAVQRL 232 >gi|167586632|ref|ZP_02379020.1| ribonuclease III [Burkholderia ubonensis Bu] Length = 278 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFGKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A++LD Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGL-APAQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDVKVSGSG 197 >gi|226199978|ref|ZP_03795528.1| ribonuclease III [Burkholderia pseudomallei Pakistan 9] gi|225928034|gb|EEH24071.1| ribonuclease III [Burkholderia pseudomallei Pakistan 9] Length = 462 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFGKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A++LD Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGLAP-AQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDIKVSGSG 197 >gi|167720558|ref|ZP_02403794.1| ribonuclease III [Burkholderia pseudomallei DM98] Length = 438 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 6/199 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 E R+ Y F N LL +ALTH S S ++ ERLEFLGD +L ++ LLF F EG Sbjct: 2 ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFGKLDEG 58 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS +LV ++ ++A+ L+++ +R+ + SI AD E++I A++LD Sbjct: 59 DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 GG E A + + + +DAKT LQE+ P Y V G H+ Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178 Query: 188 RFTVVVEISGLAP-AQGMD 205 +F V + L G Sbjct: 179 QFEVECTVPKLDIKVSGSG 197 >gi|256087296|ref|XP_002579808.1| dicer-1 [Schistosoma mansoni] gi|238665295|emb|CAZ36047.1| dicer-1, putative [Schistosoma mansoni] Length = 2174 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 92/267 (34%), Gaps = 52/267 (19%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH-------------------SYQESYERLEF 45 R+ LE + Y F + SLL +A TH S + + Y+RLEF Sbjct: 1890 RFDELESSLNYTFKDPSLLIQAFTHPSYHQLRVLSTSNNLSDQSNLMFSTDLDCYQRLEF 1949 Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR------- 98 LGD +L +I+ L+ G L+ ++LV+ + +A + L + R Sbjct: 1950 LGDAVLDYVITRFLYEDSKQHSPGVLTDLRSALVNNNIFAALAVRIGLHKYFRASSPQLL 2009 Query: 99 ----------------------VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + R + +D+ ESL A++LD + Sbjct: 2010 HTIDVFVRKSNNANNTIPTNTGHLTTNRLSDDVEIPKALSDIFESLAGAIFLDSNFSLDT 2069 Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + Y + K+ +++ + T + D R +V + Sbjct: 2070 VWQIFYPIMKERIERYTACIPKSPVRQLLELEPEGTKFERARRMV----DGRISVCAHVL 2125 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G G+ + R A+ +AA L+ Sbjct: 2126 GKGRFYGVGRNYRLAKSLAAKRALRVL 2152 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 + + +ALT S S+ + + ER+E +GD L +++ L+ + A EG+LS + +V Sbjct: 1634 PTTILQALT-MSCSNDFI-NLERMETIGDSFLKFVVTVHLYLTYPEAHEGKLSHLRSRIV 1691 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ + DL + + + Sbjct: 1692 CNSNLYRLGKAKDLQNRMIGCKFEPHENW 1720 >gi|317968415|ref|ZP_07969805.1| putative ribonuclease III [Synechococcus sp. CB0205] Length = 236 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 11/232 (4%) Query: 1 MSALRYSTLEK---RIGYAFA---NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54 M+A R++ L + +G + L++ALTH+S ++E+LEFLGD +L L Sbjct: 1 MNAERHAQLLQFLQALGLTTPAEMDLKRLDEALTHTSA--GLSVNHEKLEFLGDAVLRLA 58 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS--DLRKDVCSFMT 112 S L H+ + G+ S LVS ++ R + + + +R+ + Sbjct: 59 ASEFLEQHYPNLSVGQSSALRAQLVSDRWLGELGRAVGIDAVLRIGPTAAGDTSARETLR 118 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 + + + L+ D + RA ++ + K+ LQEW+ + Sbjct: 119 AEACEACIGALYRLWGDLTPVLLWLTPHWQATARAFEADPHLHNWKSALQEWSQGQKRGL 178 Query: 173 PEYKVTFRSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P+Y+ S DPR F V + +G S+R AEQ AA L++ Sbjct: 179 PDYRCEEVSQVHADPRRFHCQVSLGKTTLGEGWGRSRRQAEQEAARVSLEKL 230 >gi|319952824|ref|YP_004164091.1| rnase iii [Cellulophaga algicola DSM 14237] gi|319421484|gb|ADV48593.1| RNAse III [Cellulophaga algicola DSM 14237] Length = 245 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 87/217 (40%), Gaps = 6/217 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +G+ ++ +KA H S + +YERLEFLGD +LG +IS L+ + Sbjct: 24 RILGFKPKKLAVYKKAFLHRSANIRDEDGTPMNYERLEFLGDSMLGTIISKYLYTEVPTG 83 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ + +VS E +++ +EL+L ++ + ++ +V ++ Sbjct: 84 DEGYLTKMRSKIVSREHLNELGKELNLIHYVESRIPKSHFGDNIHGNVYEALVGAIYLDR 143 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + V + GK ++ K + Y + +G D Sbjct: 144 GYKYCEKFIHKSVIVPYVDIEQLEGKVISYKSLLIEWCQKQK--KSFYYDIYEDTGNDAV 201 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + I+ ++ SK+ AE++A+ Sbjct: 202 KHFAVKLHINKKIVSKARATSKKKAEEIASKRAYYAL 238 >gi|284928941|ref|YP_003421463.1| RNAse III [cyanobacterium UCYN-A] gi|284809400|gb|ADB95105.1| RNAse III [cyanobacterium UCYN-A] Length = 243 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 99/204 (48%), Gaps = 5/204 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + +L ALTH + S +++Y++LEF+GD ++ L+ + +L ++ + GE + + L Sbjct: 28 DWEILNLALTHPTFSQ--KDNYQQLEFVGDSVIRLVAAEILLENYPNELVGEFAAIRSIL 85 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 VS T ++ A L ++ ++ + KD ++ + L A + + + Sbjct: 86 VSDNTLAEFAEVYGLERYLLMAESVAKDKIGRVSWLADTFEALLGALYLNRQNMSLIRPW 145 Query: 139 VDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEI 195 +D K +++ R++ K LQEW+ +++ + P+Y+V G +H RF V + Sbjct: 146 LDPLLITKAAEIRADPARQNYKDALQEWSQSQYKLLPKYQVVQHQGSENHHQRFFAEVWV 205 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEV 219 G CSK+ AEQ AA Sbjct: 206 KNNNLGSGYGCSKKVAEQAAAKNA 229 >gi|62320294|dbj|BAD94606.1| CAF protein [Arabidopsis thaliana] Length = 690 Score = 96.5 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 81/230 (35%), Gaps = 18/230 (7%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ + LE+ + Y F + LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 336 KSIDFVRLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFF 395 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD---- 117 + S G L+ + V+ E ++VA + L ++R S + Sbjct: 396 TYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSK 455 Query: 118 ---------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 ++ + I A A K + + Sbjct: 456 PGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHP 515 Query: 169 FGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGMDCSKRAAEQ 213 E G ++ TV V I G+ + K+ A++ Sbjct: 516 VRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQK 565 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 126 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 182 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 183 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 213 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 8/79 (10%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMD 205 + + L + K P Y+ GP H RFT V ++ + M Sbjct: 609 HQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPM- 667 Query: 206 CSKRAAEQVAAAEVLKREG 224 S + A+ AA +L+ Sbjct: 668 PSVKKAKDSAAVLLLELLN 686 >gi|313668838|ref|YP_004049122.1| ribonuclease III [Neisseria lactamica ST-640] gi|313006300|emb|CBN87763.1| putative ribonuclease III [Neisseria lactamica 020-06] Length = 239 Score = 96.5 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 12 AAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPKL 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 69 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + R + +DAKT LQE A+ P+Y++ + G Sbjct: 129 SFDADFNTAEKVVRHLFADRVRRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIGHA 188 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 189 NDSMFVISCDLGELGFVCRAKGTSR 213 >gi|83589801|ref|YP_429810.1| ribonuclease III [Moorella thermoacetica ATCC 39073] gi|123524697|sp|Q2RJX2|RNC_MOOTA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|83572715|gb|ABC19267.1| RNAse III [Moorella thermoacetica ATCC 39073] Length = 233 Score = 96.5 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 101/213 (47%), Gaps = 6/213 (2%) Query: 1 MSALRYSTLE---KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLI 55 M R L+ ++ + L+ ALTH + + + +RLEFLGD +LGL++ Sbjct: 1 MDNKRQEQLQHFWEQFHLPAIDLEGLDLALTHPTYAFEHHLPGDNQRLEFLGDAVLGLVV 60 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 +T L+ HF EG+L+ ++V + +VAR L + +R+ S Sbjct: 61 ATYLYQHFPQLPEGDLTRMRAAVVCEASLVKVARRLRVGDLLRLGQGEEHSGGRERPSNL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPE 174 AD +E++I ++YL GG E+A FV + + + S D+K+ LQE+ ++ Sbjct: 121 ADAMEAIIGSVYLSGGYELARDFVLQIFTPALEILSDTSFIDSKSALQEFVQSQGTENVV 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 YK+ GPDH + V + A G+ S Sbjct: 181 YKILEEWGPDHAKGYKAGVFLKNRLLATGLGHS 213 >gi|291299631|ref|YP_003510909.1| ribonuclease III [Stackebrandtia nassauensis DSM 44728] gi|290568851|gb|ADD41816.1| ribonuclease III [Stackebrandtia nassauensis DSM 44728] Length = 243 Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 6/210 (2%) Query: 20 RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 +L A+TH S ++ + ERLEFLGD +LGL+++ L+ F EG+L+ S Sbjct: 25 PKMLTLAMTHRSYAYERGGLPTNERLEFLGDAVLGLVVTATLYRQFPDLPEGQLARLRAS 84 Query: 78 LVSAETCSQVARELDLA---SFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 +V+ + VAR L + + SI AD VE+L+ ALYL+ G++V Sbjct: 85 VVNMRALAGVARALGPGGVGPHLLLGKGEESSGGRDKNSILADSVEALLGALYLEHGMDV 144 Query: 135 AGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 A V K + + + + + G+ +GPDH RFT Sbjct: 145 AAGVVHKLFDPMIEVAARRGAALDWKTSLQELTSGAGLGVPDYRISETGPDHAKRFTAWA 204 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + G +G SK+ AEQ+AA + Sbjct: 205 VVGGEEFGEGTGGSKKEAEQIAAERAWREI 234 >gi|332664519|ref|YP_004447307.1| ribonuclease 3 [Haliscomenobacter hydrossis DSM 1100] gi|332333333|gb|AEE50434.1| Ribonuclease 3 [Haliscomenobacter hydrossis DSM 1100] Length = 248 Score = 96.1 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 105/227 (46%), Gaps = 14/227 (6%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLFNH 62 L+ +GY AN + + A +H S S+S + + ERLE+LGD +LG +++ LF Sbjct: 21 KLKPLLGYTPANLGIFKLAFSHKSTSNSGDKAYPMQNNERLEYLGDAVLGTIVAEYLFKK 80 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + + EG L+ + LV ++ +++ +++L + + S+ + VE+L Sbjct: 81 YPDSNEGFLTKMRSKLVKRKSLNRIGDKMELELLL-----SEYNTTRLSRSMLGNAVEAL 135 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTF 179 + A+YLD G FV + ++ + + + K++L EW + Sbjct: 136 VGAVYLDRGYASTKIFVINHMLRKYVNIHELERLDDNYKSQLLEWCQKSGKNVTYKLLAR 195 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 D F V V I+ A D +K++AEQ+A+ + + GI Sbjct: 196 YKFEKRDR-FKVAVMINNKRVATADDFNKKSAEQMASEKAMIALGIL 241 >gi|309378209|emb|CBX23153.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 239 Score = 96.1 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 12 AAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPKL 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 69 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + +R + +DAKT LQE A+ P+Y++ + G Sbjct: 129 SFDADFNTAEKVVRHLFSERVKRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIGHA 188 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 189 NDSMFVISCDLGELGFVCRAKGTSR 213 >gi|308190056|ref|YP_003922987.1| ribonuclease III [Mycoplasma fermentans JER] gi|319777350|ref|YP_004137001.1| ribonuclease iii [Mycoplasma fermentans M64] gi|238809526|dbj|BAH69316.1| hypothetical protein [Mycoplasma fermentans PG18] gi|307624798|gb|ADN69103.1| ribonuclease III [Mycoplasma fermentans JER] gi|318038425|gb|ADV34624.1| Ribonuclease III [Mycoplasma fermentans M64] Length = 236 Score = 96.1 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 85/238 (35%), Gaps = 17/238 (7%) Query: 1 MSALR--YSTLEKRIGYAFANRSLLEKALTHSSI-----------SHSYQESYERLEFLG 47 M ++ K + N +A+TH S +Y+ LEFLG Sbjct: 1 MDEIKQTIQEFLKAWNINYHNLGYYRQAVTHGSYFGLKKNQNKNNVSERVGNYQDLEFLG 60 Query: 48 DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 D IL L S +F F + G +++ + LV ++ ++++ ++ L F+ + Sbjct: 61 DAILQYLSSDFVFKKFPNLSAGNMTLIRSKLVCTKSLNEISTKIGLKDFLLTAPGQMSKD 120 Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAH 166 + AD+ E+ IAA+YLD ++V F++K + + Sbjct: 121 AKRSVKVGADIFEAFIAAIYLDTNLKVVKEFLNKTVFDIKIGDFDIKHLKDAKTAFQEQI 180 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F + P F G SK AE+ AA + L + Sbjct: 181 QSFSKLAVMYIVSEKSPT---EFEAHAVHDNKIYGIGFGKSKAEAEENAALDALHKMK 235 >gi|294155354|ref|YP_003559738.1| ribonuclease III [Mycoplasma crocodyli MP145] gi|291600141|gb|ADE19637.1| ribonuclease III [Mycoplasma crocodyli MP145] Length = 223 Score = 96.1 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 6/222 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNH 62 + N + +A+THSS S + YERLEFLGD ++ ++S+ LF Sbjct: 6 NLTEFFHIHEIEPNNTKIYLQAITHSSFFSSSNKKNSYERLEFLGDSVIQFVVSSELF-K 64 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 D +G+++ +V AET + ++ + L ++ + ++ T IQ DV E++ Sbjct: 65 MDDLNQGKMTELRAKVVRAETLASISIAIGLIDILKTAPGGSQETIKNSTKIQCDVFEAI 124 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + A+Y+D G+++A FV K+ KQ + + + F + Sbjct: 125 VGAIYVDQGLDIAYNFVFKFIKQYINGARQVENKDPKSRLQEYFQNFSKENIKYNVNQL- 183 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F G G SK+ AE AA + LK+ Sbjct: 184 --PNKIFQARAIHEGSVYGMGQGYSKKEAEIEAAIDALKKLK 223 >gi|325131860|gb|EGC54560.1| ribonuclease III [Neisseria meningitidis M6190] gi|325137910|gb|EGC60485.1| ribonuclease III [Neisseria meningitidis ES14902] Length = 239 Score = 96.1 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 12 AAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 69 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + R + +D KT LQE A+ P+Y++ + G Sbjct: 129 SFDADFNTAEKVVRHLFADRVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 188 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 +D F V ++ L + S+ Sbjct: 189 NDSMFVVSCDLGELGFVCRAKGTSR 213 >gi|254514114|ref|ZP_05126175.1| ribonuclease III [gamma proteobacterium NOR5-3] gi|219676357|gb|EED32722.1| ribonuclease III [gamma proteobacterium NOR5-3] Length = 224 Score = 96.1 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 8/212 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M A ++ LE++ G N SLL +AL+H S+ + ERLEFLGD +LG ++S L+ Sbjct: 1 MDAQQW--LERQFGCRLQNGSLLTQALSHRSVGS---RNNERLEFLGDSVLGFVVSEELY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EG+LS SLV + VARELDL +R+ + SI AD +E Sbjct: 56 RRFPDADEGQLSRLRVSLVKGSALAAVARELDLGDQLRLGAGEIHGGGRRRDSILADTLE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +L+ A+ LD GIE + + ++ R K + R+D KT LQE+ + P+Y + Sbjct: 116 ALLGAIVLDLGIEACRAAISRVFQSRFDALKLEQARKDPKTRLQEFLQGRGRQLPDYVLC 175 Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKR 209 +G DH FTV E+ G AQG+ S+R Sbjct: 176 DAAGEDHAKIFTVACELSDGDEVAQGVGESRR 207 >gi|229495315|ref|ZP_04389050.1| ribonuclease III [Porphyromonas endodontalis ATCC 35406] gi|229317758|gb|EEN83656.1| ribonuclease III [Porphyromonas endodontalis ATCC 35406] Length = 298 Score = 96.1 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 89/237 (37%), Gaps = 25/237 (10%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH--------------SYQESYERLEFLGDRI 50 + TLE+ +G+A ++ AL S + + ++ +RLEFLGD I Sbjct: 24 DWKTLEQILGFAIRDKEYYRLALIDPSTTASGNGGKRAAGRSKMTSNDNNDRLEFLGDSI 83 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 +G ++S L+ + ++ G LS + +VS + +A+ + + I+ SS+ + Sbjct: 84 IGAVVSETLYRTYPNSPVGALSEQKAKIVSRKIGDTIAKRMGIDGLIQHSSENFLAKDA- 142 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 + +E+++ A+YLD G + A FV+ + Sbjct: 143 ----PGNALEAIVGAIYLDRGFDFAHQFVNHKML--GIYREIRETQPDLGTNFKNKLIEW 196 Query: 171 VTPEYKVTFRSGPDHDP----RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H P F V I +K+ +EQ AA L+ Sbjct: 197 GLKHKCTVEFCLIAHAPGPRGYFVSQVFIDNQPMGHSKGSTKKGSEQGAAKLALEAI 253 >gi|84500562|ref|ZP_00998811.1| Ribonuclease III [Oceanicola batsensis HTCC2597] gi|84391515|gb|EAQ03847.1| Ribonuclease III [Oceanicola batsensis HTCC2597] Length = 226 Score = 96.1 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 76/211 (36%), Positives = 112/211 (53%), Gaps = 3/211 (1%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 M + RIG+ F LL +++THSS+S ++ +RLEFLGDR+LGL+++ L Sbjct: 1 MKLSADLQAFSSRIGHDFRRPELLVQSVTHSSVSSPTRDDNQRLEFLGDRVLGLVMAEAL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 +A EG+L+ RFN+LV E C+ VARE+ L + +++ + ++ D + Sbjct: 61 LASDRAASEGQLAPRFNALVRKEACADVAREVGLGAVLKLGRSEQLSGGRRKQALLGDAM 120 Query: 120 ESLI-AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E+ + AA+YLDGG A + + W R + RDAKT LQEWA + P Y Sbjct: 121 EA-VIAAVYLDGGFAAARDMILRLWGARVAQVDVDARDAKTALQEWAQGRGLPPPSYIEV 179 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 R GPDH P F + + AQ SKR Sbjct: 180 AREGPDHAPEFRIEARLVTGETAQASAGSKR 210 >gi|297250746|ref|ZP_06864987.2| ribonuclease III [Neisseria polysaccharea ATCC 43768] gi|296838254|gb|EFH22192.1| ribonuclease III [Neisseria polysaccharea ATCC 43768] Length = 267 Score = 95.8 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++KR+GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 40 AAIQKRLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPKL 96 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 97 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 156 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + R +D KT LQE A+ P+Y++ + G Sbjct: 157 SFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGYA 216 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 +D F V ++ L + S+ Sbjct: 217 NDSMFVVSCDLGELGFVCRAKGTSR 241 >gi|317037196|ref|XP_001398755.2| dicer-like protein 1 [Aspergillus niger CBS 513.88] Length = 1493 Score = 95.8 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 85/247 (34%), Gaps = 34/247 (13%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65 +E+++ Y F +LL A TH S ++ + Y+RLEFLGD ++ ++ LF F Sbjct: 1213 KIEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPD 1272 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---------------------- 103 L+ ++VS + +A +L L + ++ S Sbjct: 1273 RDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGA 1332 Query: 104 --RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRRD 156 V D+VE+ + A+++D E K + + F Sbjct: 1333 VDYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKPFFEDMAIYDTFANK 1392 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISGLAPAQGMDCSKRAAEQ 213 T Y + P D V + + A+G S R A+ Sbjct: 1393 HPTTFLHNRLTNEFGCVNYCLKAGEMPSIDGAPAGVLAAVIVHDVVIAEGTATSGRYAKV 1452 Query: 214 VAAAEVL 220 A+ + L Sbjct: 1453 KASEKAL 1459 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 42/132 (31%), Gaps = 13/132 (9%) Query: 11 KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58 + + + L +A T H + + +YERLEFLGD L + S Sbjct: 1007 ESLNFTVK-LDLALEAFTKDSDNTDEHRAQQIHVQRGMGRNYERLEFLGDCFLKMATSIA 1065 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF E + V L+ + A + ++ +IR R + Sbjct: 1066 LFTQNPDDDEFDYHVNRMCLICNKNLFNAAVDKEIYKYIRSRGFSRHTWYPEGLKLLQGK 1125 Query: 119 VESLIAALYLDG 130 S A Sbjct: 1126 DHSRKATTESKH 1137 >gi|158706452|sp|A2RAF3|DCL1_ASPNC RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent helicase dcl1 Length = 1525 Score = 95.8 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 85/247 (34%), Gaps = 34/247 (13%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65 +E+++ Y F +LL A TH S ++ + Y+RLEFLGD ++ ++ LF F Sbjct: 1245 KIEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPD 1304 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---------------------- 103 L+ ++VS + +A +L L + ++ S Sbjct: 1305 RDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGA 1364 Query: 104 --RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRRD 156 V D+VE+ + A+++D E K + + F Sbjct: 1365 VDYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKPFFEDMAIYDTFANK 1424 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISGLAPAQGMDCSKRAAEQ 213 T Y + P D V + + A+G S R A+ Sbjct: 1425 HPTTFLHNRLTNEFGCVNYCLKAGEMPSIDGAPAGVLAAVIVHDVVIAEGTATSGRYAKV 1484 Query: 214 VAAAEVL 220 A+ + L Sbjct: 1485 KASEKAL 1491 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 42/132 (31%), Gaps = 13/132 (9%) Query: 11 KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58 + + + L +A T H + + +YERLEFLGD L + S Sbjct: 1039 ESLNFTVK-LDLALEAFTKDSDNTDEHRAQQIHVQRGMGRNYERLEFLGDCFLKMATSIA 1097 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 LF E + V L+ + A + ++ +IR R + Sbjct: 1098 LFTQNPDDDEFDYHVNRMCLICNKNLFNAAVDKEIYKYIRSRGFSRHTWYPEGLKLLQGK 1157 Query: 119 VESLIAALYLDG 130 S A Sbjct: 1158 DHSRKATTESKH 1169 >gi|169630337|ref|YP_001703986.1| ribonuclease III [Mycobacterium abscessus ATCC 19977] gi|169242304|emb|CAM63332.1| Ribonuclease III Rnc [Mycobacterium abscessus] Length = 258 Score = 95.8 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 9/210 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62 R+ L IG + LL ALTH S ++ + ERLEFLGD +LGL I+ L++ Sbjct: 8 RHDDLRAAIGVQLGD-ELLTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITETLYHS 66 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVV 119 EG+L+ S+V+ + + VAR L L + + + +SI AD + Sbjct: 67 HPDRSEGDLAKLRASIVNTQALAGVARGLTGDGLGAHLLLGKGEENTGGRDKSSILADGM 126 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177 ES++ A+YL+ G+E A V + + + K D KT LQE K P Y V Sbjct: 127 ESILGAVYLEHGLETARAVVLTLFGELLETAPKLGAGLDWKTSLQELTAEKGWGAPSYAV 186 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 T +GPDHD FT V ++ A G+ S Sbjct: 187 TS-TGPDHDKEFTATVMVNDTAHGVGVGRS 215 >gi|221633356|ref|YP_002522581.1| ribonuclease III [Thermomicrobium roseum DSM 5159] gi|221156675|gb|ACM05802.1| ribonuclease III [Thermomicrobium roseum DSM 5159] Length = 252 Score = 95.8 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 67/210 (31%), Positives = 93/210 (44%), Gaps = 11/210 (5%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQES--------YERLEFLGDRILGLLISTLLFN 61 + +G AF LL +ALTH S + S ERLEFLGD +L LL+S L+ Sbjct: 22 MEALGIAFRRPDLLRQALTHLSYVYERSRSTQAAVEEANERLEFLGDAVLELLVSEFLYR 81 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVE 120 F +A EGEL+ +LV T ++ AR L F+ + I A E Sbjct: 82 RFPTASEGELTAYRAALVRTPTLARWARRFRLDEFLYLGRSEVPRPGRPVRERILAGAFE 141 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ ALYLD GI V F+ + + A + + K LQE + +TP Y+ Sbjct: 142 AVLGALYLDRGIRVVRRFLHRLLLEEAEGLIAIGQNENYKGRLQELIQDRLRITPVYRTI 201 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 +GP H FT V I G SK Sbjct: 202 AVTGPAHQRTFTAEVLIGERPYGVGHGPSK 231 >gi|156371137|ref|XP_001628622.1| predicted protein [Nematostella vectensis] gi|156215603|gb|EDO36559.1| predicted protein [Nematostella vectensis] Length = 261 Score = 95.8 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 89/255 (34%), Gaps = 40/255 (15%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNH 62 + +E +GY F +R +L +ALTH+S +Y SYE+LEFLGD +L L++ + Sbjct: 6 LALVEASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYLVTRHVLQR 65 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----------- 111 F G ++ +++V+ + + + + D +R S V Sbjct: 66 FPRLSPGAITDLRSAVVNNYSLACLTIQRDFHKHMRSMSMALFKVVRRFVRRLSEIEEKE 125 Query: 112 ----------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 + D+ E+L+ ALY+D G + + Y + Sbjct: 126 TRPDQLLLTTVEDGRGGEAIEVPKVLGDLFEALLGALYVDCGRDEELAWSVIYPLLTPII 185 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + ++ G ++ H + + G G + + Sbjct: 186 EHYSVHLPISPTRQLVEMMPGAATFTCLSQNVIGHHA----CELVVKGYGRFMGTGRNAQ 241 Query: 210 AAEQVAAAEVLKREG 224 A AA L R Sbjct: 242 IARSTAAQHALARIK 256 >gi|326693698|ref|ZP_08230703.1| ribonuclease III [Leuconostoc argentinum KCTC 3773] Length = 240 Score = 95.8 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 46/208 (22%), Positives = 80/208 (38%), Gaps = 6/208 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64 L F + LL +ALT + + + Y+RLEFLGD ++ + ++ LF + Sbjct: 17 LRTEFNIVFHDEDLLLEALTQRNYLNEHPNEPGRDYQRLEFLGDSVMQVSVAEYLFKRYP 76 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + EG+L+ ++V + + +R + L +R+ S+ D+ E+ I Sbjct: 77 NWHEGQLTEMRIAMVQTRSFAHFSRLVHLNEAVRLGKGEEMSGARERDSLLEDIWEAFIG 136 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--G 182 ALYLD G + F+++ R + G T R Sbjct: 137 ALYLDQGADAVQEFLERTLFAAIDTGFFDRFIDFKSRLQEKLQVNGAVVIDYQTEREQAM 196 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRA 210 D F V + G A+G S + Sbjct: 197 ADKTQVFEASVSVDGHELARGTGKSIKD 224 >gi|320590575|gb|EFX03018.1| rnase3 domain containing protein [Grosmannia clavigera kw1407] Length = 1246 Score = 95.8 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 91/267 (34%), Gaps = 52/267 (19%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ K +GY F LL A TH S + SY+RLEFLGD +L + I LF+ F + Sbjct: 945 SIAKDLGYQFRFPRLLRSAFTHPSYPRIYENLPSYQRLEFLGDALLDMAIVDYLFHKFSN 1004 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR--------------------- 104 L+ ++VS + + ++ L I S Sbjct: 1005 KDPQWLTEHKMAMVSNQFLAFLSVSLGFHRHILSFSGEMRKQILEYVTKVEEERVRAESE 1064 Query: 105 ---------------KDVCSFMTSIQADVVESLIAALYLDGGIEV-------AGTFVDKY 142 + ADV+E+ + AL++D + T V Y Sbjct: 1065 AVEAGRPASEFARDYWVHVTHPPKALADVLEAYVGALFVDSEYDYHGTVLKFFNTHVQPY 1124 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF---RSGPDHDPRFTVVV----EI 195 +K +L + T + +FG + + + F V + Sbjct: 1125 FKDMSLYDTFANKHPVTFAVKMLSQRFGCRDWRVIVQEIPDTEGEGCVTFATKVAAGFLV 1184 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G G+ S R A+ AA + L + Sbjct: 1185 HGQVVGHGIAESGRYAKIGAAKKALAK 1211 Score = 40.7 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 27/67 (40%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 +YERLE LGD L L S LF E E V+ ++ A ++ Sbjct: 751 FQAGMGRNYERLELLGDSFLKLATSIALFTLVPDKDEFEYHVQRMCMICNRNLFNNALDM 810 Query: 92 DLASFIR 98 L +IR Sbjct: 811 KLEEYIR 817 >gi|224064945|ref|XP_002301611.1| predicted protein [Populus trichocarpa] gi|222843337|gb|EEE80884.1| predicted protein [Populus trichocarpa] Length = 303 Score = 95.8 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 90/238 (37%), Gaps = 27/238 (11%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E+ + Y F ++ LLE+ALTH+S S SYERLE++GD +L LL + + + Sbjct: 53 DLDEVEEILHYKFKSKKLLEEALTHASFS-DQCFSYERLEYVGDSVLNLLFTKEQYFLYP 111 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111 G L+ ++ V E ++VA + L ++R L ++ Sbjct: 112 DLPPGPLTRLRSANVDTEKLARVAIKHKLHRYLRHKMPLLEEQIREFSQAILDYPLHSNG 171 Query: 112 ----TSIQADVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAH 166 AD+VE+ I A+++D + + + + + TEL E Sbjct: 172 LVETPKALADIVEAAIGAVFIDSNFSIDVVWKIFKDLLEPIISQETLKVHPVTELYEVCQ 231 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVLKRE 223 + + + F V I +G K+ A AA L Sbjct: 232 KRNLKVKFVDLWKENMA-----F--DVFIDDQFVGRGTYGLKKEIAHNRAAKNALNNI 282 >gi|313675278|ref|YP_004053274.1| RNAse iii [Marivirga tractuosa DSM 4126] gi|312941976|gb|ADR21166.1| RNAse III [Marivirga tractuosa DSM 4126] Length = 243 Score = 95.4 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 85/226 (37%), Gaps = 7/226 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61 + ++ +GY L HSS++ + ++ S ERLE+LGD ILG +++ LF Sbjct: 20 VAAVKSIVGYKPFRLELFRLVTQHSSVAKTLPNGFRASNERLEYLGDAILGAVVADYLFK 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVE 120 + EG L+ + +V+ E+ S +A+++ ++ + + + + Sbjct: 80 KYPFKDEGFLTEIRSRIVNRESLSLLAKKIGISQMLESDFSRSRYHFKSIYGDMMEAFIG 139 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++ + + ++ + + + + Sbjct: 140 AVYIDRGYKYCQKFIINKLLIPHFDLDEIIENNTNYKSILIEWSQKENKSIRFDIEDQKQ 199 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 G F + ++ ++G +K+ AEQ AA + ++ + Sbjct: 200 EGS--KKEFRAAIFVNSEKISKGAGLNKKKAEQNAAFKACRKLNLI 243 >gi|330723844|gb|AEC46214.1| Ribonuclease III [Mycoplasma hyorhinis MCLD] Length = 225 Score = 95.4 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 10/218 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTL 58 MS+++ L + N SL E+A TH S H + YE LEFLGD +L L S Sbjct: 1 MSSIK--ELLLNLNIVANNLSLYEQAFTHKSYHHVRPNKPHYEMLEFLGDSLLNLQTSLY 58 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 +F + D+ EG ++ + +VS+ + ++++ +L L+ +++V+ + + + AD+ Sbjct: 59 IFKNIDAKNEGNATILRSQIVSSVSFAKISDKLQLSKYLKVAKGSEEILNNTKIK--ADI 116 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +ESL AA+YLD + FV K K K + F + +T Sbjct: 117 LESLTAAIYLDQDKKTFEDFVKKILHSLVKKQSKKVIKDPKSEFQEIIQSFSKSSIKYIT 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 ++ D F + G S + AE AA Sbjct: 177 KKT----DKFFESELIWDNKIYGHGKGNSIKEAELEAA 210 >gi|148241236|ref|YP_001226393.1| ribonuclease III [Synechococcus sp. RCC307] gi|147849546|emb|CAK27040.1| Ribonuclease III [Synechococcus sp. RCC307] Length = 236 Score = 95.4 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 84/209 (40%), Gaps = 9/209 (4%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L ALTH+S ++E LEFLGD +L L + L + GE S LVS Sbjct: 25 LHTALTHTSAGLEV--NHEELEFLGDAVLRLACAEFLEENNSKLSVGERSAFRAQLVSDR 82 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 +++A EL L I+ S D + T + A GG + V ++ Sbjct: 83 WLAELAAELQLDGLIKQGSATAADTTARATVRAECCEALVGAVYLAWGGADGGLHAVRQW 142 Query: 143 WKQRALKSG------KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEI 195 + +S R + K+ LQE A+ P Y T + D R F VV + Sbjct: 143 LDPQWQRSCLELAEDPHRHNWKSALQELTQAQQAGLPSYSTTEENSNHGDQRRFRSVVSV 202 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + G S+R AEQ AA L++ Sbjct: 203 NAKEKGCGWGPSRRLAEQEAARAALEQLK 231 >gi|116071631|ref|ZP_01468899.1| Ribonuclease III [Synechococcus sp. BL107] gi|116065254|gb|EAU71012.1| Ribonuclease III [Synechococcus sp. BL107] Length = 251 Score = 95.4 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 96/234 (41%), Gaps = 13/234 (5%) Query: 1 MSA---LRYSTLEKRIGYAFANR----SLLEKALTHSSISHSYQESYERLEFLGDRILGL 53 M + L + IG N +L+++ALTH S +++ERLEFLGD +L L Sbjct: 1 MDSTRTKNLLELLRAIGLQELNSSKLMNLVDEALTHISA--GRGKNFERLEFLGDAVLRL 58 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS---DLRKDVCSF 110 + + +H+ + G S LVS +Q+ +L L SF+ + + Sbjct: 59 AATEFIDHHYPNLPVGSCSSLRAQLVSDRWLTQLGEKLQLESFLVIGPKALGDEAARATL 118 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 ++ ++ + + + + + K+ LQEW+ A+ Sbjct: 119 HADATEALIGAIYSGSDNNLEPIHQWLTPQWQQTTADVFATPHLFNGKSILQEWSQAEGL 178 Query: 171 VTPEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P Y T +S DP RF V++ A G S++ AEQ AA+ ++ Sbjct: 179 GLPNYITTEQSCRHGDPERFKSHVQVGTRLGADGFGRSRKYAEQNAASNAVQSL 232 >gi|300741697|ref|ZP_07071718.1| ribonuclease III [Rothia dentocariosa M567] gi|311113800|ref|YP_003985022.1| ribonuclease III [Rothia dentocariosa ATCC 17931] gi|300380882|gb|EFJ77444.1| ribonuclease III [Rothia dentocariosa M567] gi|310945294|gb|ADP41588.1| ribonuclease III [Rothia dentocariosa ATCC 17931] Length = 228 Score = 95.4 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 59/215 (27%), Positives = 90/215 (41%), Gaps = 8/215 (3%) Query: 1 MSALRYS--TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIS 56 M+ + L +R+G + +LTH S + E ERLEFLGD +L L I+ Sbjct: 1 MTNIPSEAGELLERLGVDI-DAETFLLSLTHRSYAFENPGVEHNERLEFLGDSVLSLAIA 59 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ EGEL + +VSA + AR+L+L IR+ R + SI A Sbjct: 60 EEVYRRHPELPEGELVKLHHVVVSAPALAIAARKLELGKHIRLGKGERLTGGADKDSILA 119 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPE 174 D +E++ A Y+ G E A V + + RD KT+LQ ++ Sbjct: 120 DTMEAIFGATYISLGREAARELVLRLIAPMLEDEQILNSGRDWKTDLQTLVTSRSWG-DV 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDH +T ++ G SK+ Sbjct: 179 TYEIEAEGPDHARVYTARAIVAKQTAGTGSGPSKK 213 >gi|94450854|gb|ABF19797.1| dicer-like 2 spliceform 1 [Arabidopsis thaliana] Length = 1386 Score = 95.4 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 82/239 (34%), Gaps = 32/239 (13%) Query: 10 EKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E + Y+F ++SLL +ALTH S Y+RLEFLGD +L LI+ L++ + Sbjct: 1151 ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSP 1210 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI----- 123 G L+ ++ V+ E + VA + +L I +S S S Sbjct: 1211 GLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWES 1270 Query: 124 -----------------AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 A G + K + + EL E Sbjct: 1271 DISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQ 1330 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 + K FTV V+ ++ A K+ A+++A EVL Sbjct: 1331 KWQFELSKAKDFD--------SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 1381 >gi|6714410|gb|AAF26098.1|AC012328_1 unknown protein [Arabidopsis thaliana] Length = 2042 Score = 95.4 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 82/239 (34%), Gaps = 32/239 (13%) Query: 10 EKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E + Y+F ++SLL +ALTH S Y+RLEFLGD +L LI+ L++ + Sbjct: 1807 ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSP 1866 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI----- 123 G L+ ++ V+ E + VA + +L I +S S S Sbjct: 1867 GLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWES 1926 Query: 124 -----------------AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 A G + K + + EL E Sbjct: 1927 DISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQ 1986 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 + K FTV V+ ++ A K+ A+++A EVL Sbjct: 1987 KWQFELSKAKDFD--------SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 2037 >gi|332189100|gb|AEE27221.1| endoribonuclease Dicer [Arabidopsis thaliana] Length = 1910 Score = 95.4 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 81/230 (35%), Gaps = 18/230 (7%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ + LE+ + Y F + LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1556 KSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFF 1615 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD---- 117 + S G L+ + V+ E ++VA + L ++R S + Sbjct: 1616 TYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSK 1675 Query: 118 ---------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 ++ + I A A K + + Sbjct: 1676 PGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHP 1735 Query: 169 FGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGMDCSKRAAEQ 213 E G ++ TV V I G+ + K+ A++ Sbjct: 1736 VRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQK 1785 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 1346 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1402 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1403 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1433 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 8/79 (10%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMD 205 + + L + K P Y+ GP H RFT V ++ + M Sbjct: 1829 HQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPM- 1887 Query: 206 CSKRAAEQVAAAEVLKREG 224 S + A+ AA +L+ Sbjct: 1888 PSVKKAKDSAAVLLLELLN 1906 >gi|296139284|ref|YP_003646527.1| ribonuclease III [Tsukamurella paurometabola DSM 20162] gi|296027418|gb|ADG78188.1| ribonuclease III [Tsukamurella paurometabola DSM 20162] Length = 249 Score = 95.4 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 7/205 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66 L + +G + LL ALTH S ++ + ERLEFLGD +LG+ ++ L+ Sbjct: 16 LLEALGVELDD-ELLTLALTHRSYAYEAGGLPTNERLEFLGDSVLGISVTEWLYVTHPDK 74 Query: 67 KEGELSVRFNSLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 EGEL+ S+V+ ++VAR+L + + + SI AD +E+L+ Sbjct: 75 PEGELAKIRASVVNMHALARVARKLGEGGLGAHLYLGRGEELTGGRDKDSILADGMEALL 134 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSG 182 A++++ GI+ A + V + ++ S + A+ + +G Sbjct: 135 GAVHIEHGIDTARSVVLRLFEPMLTTSSTMGAGLDWKTSLQELTAERDLGVPAYRITSTG 194 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS 207 PDHD FT VV I +G+ + Sbjct: 195 PDHDKEFTAVVVIDEADLGEGVGRT 219 >gi|6102610|gb|AAF03534.1|AF187317_1 CAF protein [Arabidopsis thaliana] Length = 1909 Score = 95.4 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 81/230 (35%), Gaps = 18/230 (7%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ + LE+ + Y F + LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1555 KSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFF 1614 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD---- 117 + S G L+ + V+ E ++VA + L ++R S + Sbjct: 1615 TYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSK 1674 Query: 118 ---------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 ++ + I A A K + + Sbjct: 1675 PGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHP 1734 Query: 169 FGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGMDCSKRAAEQ 213 E G ++ TV V I G+ + K+ A++ Sbjct: 1735 VRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQK 1784 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 1345 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1401 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1402 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1432 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 8/79 (10%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMD 205 + + L + K P Y+ GP H RFT V ++ + M Sbjct: 1828 HQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPM- 1886 Query: 206 CSKRAAEQVAAAEVLKREG 224 S + A+ AA +L+ Sbjct: 1887 PSVKKAKDSAAVLLLELLN 1905 >gi|15223286|ref|NP_171612.1| DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III [Arabidopsis thaliana] gi|34922211|sp|Q9SP32|DCL1_ARATH RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=AtDCL1; AltName: Full=Protein ABNORMAL SUSPENSOR 1; AltName: Full=Protein CARPEL FACTORY; AltName: Full=Protein SHORT INTEGUMENTS 1; AltName: Full=Protein SUSPENSOR 1 gi|11559645|gb|AAG38019.1|AF292940_1 short integuments 1 [Arabidopsis thaliana] gi|11559647|gb|AAG38020.1|AF292941_1 short integuments 1 [Arabidopsis thaliana] gi|332189099|gb|AEE27220.1| endoribonuclease Dicer [Arabidopsis thaliana] Length = 1909 Score = 95.4 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 81/230 (35%), Gaps = 18/230 (7%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ + LE+ + Y F + LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1555 KSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFF 1614 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD---- 117 + S G L+ + V+ E ++VA + L ++R S + Sbjct: 1615 TYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSK 1674 Query: 118 ---------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 ++ + I A A K + + Sbjct: 1675 PGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHP 1734 Query: 169 FGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGMDCSKRAAEQ 213 E G ++ TV V I G+ + K+ A++ Sbjct: 1735 VRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQK 1784 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 1345 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1401 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1402 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1432 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 8/79 (10%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMD 205 + + L + K P Y+ GP H RFT V ++ + M Sbjct: 1828 HQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPM- 1886 Query: 206 CSKRAAEQVAAAEVLKREG 224 S + A+ AA +L+ Sbjct: 1887 PSVKKAKDSAAVLLLELLN 1905 >gi|91215536|ref|ZP_01252507.1| putative ribonuclease III [Psychroflexus torquis ATCC 700755] gi|91186488|gb|EAS72860.1| putative ribonuclease III [Psychroflexus torquis ATCC 700755] Length = 245 Score = 95.4 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 6/222 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLIST 57 + + + +++ I + S+ ++A THSS+ SYERLEFLGD ILG +IST Sbjct: 16 NGIFFKKIQRIIKVKHKSLSIYKQAFTHSSLKLKDDEGKFISYERLEFLGDSILGAVIST 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + EG L+ + +VS + + + DLA + K + ++ Sbjct: 76 YLFENAPHGDEGYLTKMRSKIVSRKNLNLLGESFDLADLTLSEIPVEKMGKNINGNLFEA 135 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ++ ++ V + A + ++ KF E+ + Sbjct: 136 LIGAIYVDKGFKDCEAFIYKKVIREDVDLAKLEKRVMSYKSLMIEWCQKNKF--PFEFVI 193 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 G D + F V + I+ + + SK+ AE+ A+ Sbjct: 194 EDDFGKDEEKHFAVKLIINNEISGKARETSKKRAEEKASQRA 235 >gi|304373283|ref|YP_003856492.1| Ribonuclease III [Mycoplasma hyorhinis HUB-1] gi|304309474|gb|ADM21954.1| Ribonuclease III [Mycoplasma hyorhinis HUB-1] Length = 225 Score = 95.0 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 10/218 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTL 58 MS+++ L + + SL E+A TH S H + YE LEFLGD +L L S Sbjct: 1 MSSIK--ELLLNLNIVANDLSLYEQAFTHKSYHHVRPNKPHYEMLEFLGDSLLNLQTSLY 58 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 +F + D+ EG ++ + +VS+ + ++++ +L L+ +++V+ + + + AD+ Sbjct: 59 IFKNIDAKNEGNATILRSQIVSSVSFAKISEKLQLSKYLKVAKGSEEILNNTKIK--ADI 116 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +ESL AA+YLD + FV K K K + F + +T Sbjct: 117 LESLTAAIYLDQDKKTFEDFVKKILHSLVKKQSKKVIKDPKSEFQEIIQSFSKSSIKYIT 176 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 ++ D F + G S + AE AA Sbjct: 177 KKT----DKFFESELIWDNKIYGHGKGNSIKEAELEAA 210 >gi|300775975|ref|ZP_07085834.1| ribonuclease III [Chryseobacterium gleum ATCC 35910] gi|300505108|gb|EFK36247.1| ribonuclease III [Chryseobacterium gleum ATCC 35910] Length = 254 Score = 95.0 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 7/224 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L+K +G N +L +A + + S + +YERLEFLGD +LG +IS LF + A Sbjct: 28 TELKKVLGTEVQNIALYREAFSLKNSSKNQDSNYERLEFLGDSVLGTIISCHLFQTYPQA 87 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ + +V+ + +++ +L L + ++ + + ++ ++ + Sbjct: 88 NEGYLTQMKSKIVNRKNLNKLGEDLKLTNLLQKQNSSSALGENISGNLFEALIGA---VY 144 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 ++K + + + + L K V +Y+ + Sbjct: 145 LDFHYDACKRIILEKLLTPSEINKLENKIVSYKGLLLEWSQKKKVNIKYETCEEIQANKS 204 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL----KREGIW 226 F V + A + SK+ AE+ AA K+E I Sbjct: 205 VVFRCHVWLGEEKIANATETSKKKAEEKAAQRAFYILNKKENIL 248 >gi|145338056|ref|NP_566199.4| DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding / ribonuclease III [Arabidopsis thaliana] gi|322518659|sp|Q3EBC8|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName: Full=Dicer-like protein 2; Short=AtDCL2 gi|332640403|gb|AEE73924.1| protein dicer-like 2 [Arabidopsis thaliana] gi|332640405|gb|AEE73926.1| protein dicer-like 2 [Arabidopsis thaliana] Length = 1388 Score = 95.0 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 82/239 (34%), Gaps = 32/239 (13%) Query: 10 EKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E + Y+F ++SLL +ALTH S Y+RLEFLGD +L LI+ L++ + Sbjct: 1153 ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSP 1212 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI----- 123 G L+ ++ V+ E + VA + +L I +S S S Sbjct: 1213 GLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWES 1272 Query: 124 -----------------AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 A G + K + + EL E Sbjct: 1273 DISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQ 1332 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 + K FTV V+ ++ A K+ A+++A EVL Sbjct: 1333 KWQFELSKAKDFD--------SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 1383 >gi|254673607|emb|CBA09131.1| ribonuclease III [Neisseria meningitidis alpha275] Length = 267 Score = 95.0 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++KR+GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 40 AAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPKL 96 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 97 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 156 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + R +D KT LQE A+ P+Y++ + G Sbjct: 157 SFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 216 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 +D F V ++ L + S+ Sbjct: 217 NDSMFVVSCDLGELGFVCRAKGTSR 241 >gi|158706454|sp|Q0CW42|DCL1_ASPTN RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent helicase dcl1 Length = 1519 Score = 95.0 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 86/255 (33%), Gaps = 36/255 (14%) Query: 2 SALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 S + +E+++GY F LL A TH S ++ Y+ LEFLGD +L ++ Sbjct: 1230 SEIDLCRRVEEKLGYHFRYPRLLHSAFTHPSYPSAWARVPCYQSLEFLGDALLDMVCVED 1289 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS----- 113 LF F L+ ++VS + +A +L L + + S + + Sbjct: 1290 LFRRFPDRDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLSYFSSALQSQITHYAEEAQAA 1349 Query: 114 --------------------IQADVVESLIAALYLDGGIE------VAGTFVDKYWKQRA 147 D+VE+ + A+++D + Y+ A Sbjct: 1350 ASQSDVAVDYWTLTQDPPKVCLPDMVEAYLGAVFVDSNFRFEEVEVFFQQHIKPYFHDMA 1409 Query: 148 LKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMD 205 + R T L + + K G D D V + G+ Sbjct: 1410 IYDTFANRHPTTFLHNKLTNEYGCLNYCLKAGEIPGADGDASTVLAAVIVHDTILTTGVA 1469 Query: 206 CSKRAAEQVAAAEVL 220 S R A+ A+ L Sbjct: 1470 SSGRYAKVKASENAL 1484 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 13/100 (13%) Query: 11 KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58 K++G + +ALT H S + ++YERLEFLGD L + S Sbjct: 1031 KKLGLEIS-LEYALEALTKDSDNTHEHRSQQVHMQRGMGKNYERLEFLGDCFLKMATSIS 1089 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 LFN E + V L+ A + +L FIR Sbjct: 1090 LFNQHPDDNEFDYHVNRMCLICNRNLFNSAVKKELYQFIR 1129 >gi|218767809|ref|YP_002342321.1| ribonuclease III [Neisseria meningitidis Z2491] gi|22654074|sp|Q9JVD3|RNC_NEIMA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|121051817|emb|CAM08123.1| putative ribonuclease III [Neisseria meningitidis Z2491] Length = 239 Score = 95.0 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 12 AAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 69 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + +R + +D KT LQE A+ P+Y++ + G Sbjct: 129 SFDADFNTAEKVVRHLFAERVRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 188 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 189 NDSMFVISCDLGELGFVCRAKGTSR 213 >gi|298369788|ref|ZP_06981104.1| ribonuclease III [Neisseria sp. oral taxon 014 str. F0314] gi|298281248|gb|EFI22737.1| ribonuclease III [Neisseria sp. oral taxon 014 str. F0314] Length = 302 Score = 95.0 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 6/206 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +++R+G+ F LL++ALTH S ++ ER EF+GD IL I+ +LF+ F Sbjct: 75 QAIQRRLGHKFVRIELLQQALTHRSF---NAKNNERFEFVGDAILNYSIAKMLFDAFPKL 131 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS +LV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 132 TEGELSRLRANLVNEHVLAEIALEMNIGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 191 Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D G A V + +R + +D KT LQE A+ P+Y++ + G Sbjct: 192 SFDAGFAAAEEVVRHLFAERVKRVDFKNQGKDNKTVLQEALQARHLPLPKYRIEEQVGGV 251 Query: 185 HDPRFTVVVEISGL-APAQGMDCSKR 209 D RF V ++ L + +++ Sbjct: 252 KDSRFVVSCDLGELGFICRAQGTNRK 277 >gi|218663008|ref|ZP_03518938.1| ribonuclease III [Rhizobium etli IE4771] Length = 206 Score = 95.0 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 94/153 (61%), Positives = 122/153 (79%) Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 R N LVSAETC+ VA EL+L +IR +D++K M +++ADVVESLIAA+YLDGG+E Sbjct: 47 RLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVESLIAAIYLDGGLE 106 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 VA F+ +YW+ RA+++ +RDAKTELQEW+HAKFGVTP Y+V RSGPDHDPRF V V Sbjct: 107 VARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDERSGPDHDPRFKVTV 166 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 E++G+ P G++ SKRAAEQVAA ++L+REGIW Sbjct: 167 EVAGIKPETGVERSKRAAEQVAATKMLEREGIW 199 >gi|238793773|ref|ZP_04637394.1| Ribonuclease 3 [Yersinia intermedia ATCC 29909] gi|238726837|gb|EEQ18370.1| Ribonuclease 3 [Yersinia intermedia ATCC 29909] Length = 204 Score = 94.6 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 65/190 (34%), Positives = 96/190 (50%), Gaps = 6/190 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +ALTH S + ERLEFLGD IL +I+ L++ F EG++S +LV T Sbjct: 2 LQALTHRSA---NSKHNERLEFLGDSILSFVIANELYHRFPRVDEGDMSRMRATLVRGNT 58 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 +++ARE DL +R+ K SI AD VE+LI ++LD I + + ++ Sbjct: 59 LAEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHMIERLILDWY 118 Query: 144 KQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200 + R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 119 RSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEP 178 Query: 201 AQGMDCSKRA 210 G S+R Sbjct: 179 VIGTGSSRRK 188 >gi|94450856|gb|ABF19798.1| dicer-like 2 spliceform 2 [Arabidopsis thaliana] Length = 1374 Score = 94.6 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 82/239 (34%), Gaps = 32/239 (13%) Query: 10 EKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E + Y+F ++SLL +ALTH S Y+RLEFLGD +L LI+ L++ + Sbjct: 1139 ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSP 1198 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI----- 123 G L+ ++ V+ E + VA + +L I +S S S Sbjct: 1199 GLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWES 1258 Query: 124 -----------------AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 A G + K + + EL E Sbjct: 1259 DISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQ 1318 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 + K FTV V+ ++ A K+ A+++A EVL Sbjct: 1319 KWQFELSKAKDFD--------SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 1369 >gi|158706457|sp|A1CBC9|DCL1_ASPCL RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent helicase dcl1 Length = 1534 Score = 94.6 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 82/248 (33%), Gaps = 35/248 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFD 64 +E+++GY F LL A+TH S + Y+RLEFLGD +L ++ LF+ F Sbjct: 1252 QVEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVPCYQRLEFLGDSLLDMVCVEDLFHRFP 1311 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------------- 103 L+ ++VS + +A +L I+ S+ Sbjct: 1312 DRDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESEG 1371 Query: 104 ---RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155 V D+VE+ + A+++D E K + Q F Sbjct: 1372 AVDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFAN 1431 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAE 212 T A Y + P D V + ++ S R A+ Sbjct: 1432 KHPTTFLHNRLANEFGCTNYCLKAGEMPAIDGMPAGVLAAVIVHNSVVSEATASSSRYAK 1491 Query: 213 QVAAAEVL 220 A+ L Sbjct: 1492 IRASERAL 1499 Score = 44.1 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 31/74 (41%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 ++YERLEFLGD L + S LF E + V L+ + A++ Sbjct: 1078 FQRGMGKNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNTAKKR 1137 Query: 92 DLASFIRVSSDLRK 105 + +IR S R Sbjct: 1138 QIYRYIRSRSFSRH 1151 >gi|121713724|ref|XP_001274473.1| RNase3 domain protein [Aspergillus clavatus NRRL 1] gi|119402626|gb|EAW13047.1| RNase3 domain protein [Aspergillus clavatus NRRL 1] Length = 1552 Score = 94.6 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 82/248 (33%), Gaps = 35/248 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFD 64 +E+++GY F LL A+TH S + Y+RLEFLGD +L ++ LF+ F Sbjct: 1270 QVEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVPCYQRLEFLGDSLLDMVCVEDLFHRFP 1329 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------------- 103 L+ ++VS + +A +L I+ S+ Sbjct: 1330 DRDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESEG 1389 Query: 104 ---RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155 V D+VE+ + A+++D E K + Q F Sbjct: 1390 AVDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFAN 1449 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAE 212 T A Y + P D V + ++ S R A+ Sbjct: 1450 KHPTTFLHNRLANEFGCTNYCLKAGEMPAIDGMPAGVLAAVIVHNSVVSEATASSSRYAK 1509 Query: 213 QVAAAEVL 220 A+ L Sbjct: 1510 IRASERAL 1517 Score = 44.1 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 31/74 (41%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 ++YERLEFLGD L + S LF E + V L+ + A++ Sbjct: 1096 FQRGMGKNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNTAKKR 1155 Query: 92 DLASFIRVSSDLRK 105 + +IR S R Sbjct: 1156 QIYRYIRSRSFSRH 1169 >gi|256372281|ref|YP_003110105.1| ribonuclease III [Acidimicrobium ferrooxidans DSM 10331] gi|256008865|gb|ACU54432.1| ribonuclease III [Acidimicrobium ferrooxidans DSM 10331] Length = 263 Score = 94.6 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 62/198 (31%), Positives = 88/198 (44%), Gaps = 6/198 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +AL H S S +S ERLEFLGD ++ L++S L+ + EG L+ ++LVS + Sbjct: 26 RQALVHKSASRDPLDSNERLEFLGDAVIELVVSDYLYRRYPDVDEGRLTQVRSALVSRRS 85 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 V + L I V + A+ VE+L A+YL GG +++ FV Sbjct: 86 LGSVGVQGGLLEAITVGQADALGPV-----LAANAVEALAGAVYLAGGFQLSVAFVLAIL 140 Query: 144 KQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 G L A AK P SGPDHD R+ VVV++ G A Sbjct: 141 GPSLERVDGDLVLGDYKSLLHQALAKLHHQPPRYKVSWSGPDHDRRYRVVVQLPGGFEAA 200 Query: 203 GMDCSKRAAEQVAAAEVL 220 G S++ AEQ A + Sbjct: 201 GEGASRKEAEQEACRLAI 218 >gi|145331748|ref|NP_001078101.1| DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding / ribonuclease III [Arabidopsis thaliana] gi|332640404|gb|AEE73925.1| protein dicer-like 2 [Arabidopsis thaliana] Length = 1374 Score = 94.6 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 82/239 (34%), Gaps = 32/239 (13%) Query: 10 EKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E + Y+F ++SLL +ALTH S Y+RLEFLGD +L LI+ L++ + Sbjct: 1139 ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSP 1198 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI----- 123 G L+ ++ V+ E + VA + +L I +S S S Sbjct: 1199 GLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWES 1258 Query: 124 -----------------AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 A G + K + + EL E Sbjct: 1259 DISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQ 1318 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 + K FTV V+ ++ A K+ A+++A EVL Sbjct: 1319 KWQFELSKAKDFD--------SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 1369 >gi|218247605|ref|YP_002372976.1| Ribonuclease III [Cyanothece sp. PCC 8801] gi|257061062|ref|YP_003138950.1| ribonuclease III [Cyanothece sp. PCC 8802] gi|218168083|gb|ACK66820.1| Ribonuclease III [Cyanothece sp. PCC 8801] gi|256591228|gb|ACV02115.1| ribonuclease III [Cyanothece sp. PCC 8802] Length = 236 Score = 94.6 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 8/221 (3%) Query: 5 RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + TL +++G + N L+ ALTH +IS ++Y++LEFLGD ++ L + LL Sbjct: 11 QLRTLIQKLGLSEQSPVNYFWLDLALTHPTISQE--KNYQQLEFLGDSVIRLAAAELLLE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + +A GE + + +VS T +++A L S++ VS KD ++ + Sbjct: 69 TYPNAPVGEFAALRSMMVSDRTLAELADSFTLESYLLVSDSAAKDKVGRVSRLADAFEAV 128 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL---QEWAHAKFGVTPEYKVT 178 L A +E+ ++D+ K +A + + + + + T Sbjct: 129 LGALYLSTHTMELIRPWLDELLKVKAEEIRQDPARQNYKDAVQEWTQAQYKLLPEYRVQT 188 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +S P P F V + G SK+ AEQ AA + Sbjct: 189 IKSLPTEQPYFLAEVWLQNRKLGSGEGRSKKMAEQAAAKDA 229 >gi|269214809|ref|ZP_05987185.2| ribonuclease III [Neisseria lactamica ATCC 23970] gi|269208949|gb|EEZ75404.1| ribonuclease III [Neisseria lactamica ATCC 23970] Length = 267 Score = 94.6 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 40 AAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPKL 96 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 97 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 156 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + R + +DAKT LQE A+ P+Y++ + G Sbjct: 157 SFDADFNTAEKVVRHLFADRVRRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIGHA 216 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 217 NDSMFVISCDLGELGFVCRAKGTSR 241 >gi|296171390|ref|ZP_06852723.1| ribonuclease III [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894165|gb|EFG73924.1| ribonuclease III [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 237 Score = 94.6 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 67/208 (32%), Positives = 101/208 (48%), Gaps = 9/208 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 L + +G + LL ALTH S ++ + + ERLEFLGD +LGL I+ L++ Sbjct: 5 EDLLEALGVELPD-ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDELYHRHP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG+L+ S+V+ + + VAR+L L + + + +SI AD +ES Sbjct: 64 DRSEGDLAKLRASVVNTQALADVARKLSADGLGVHLFLGRGEANTGGADKSSILADGMES 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A+YL GI+ A + + + + D KT LQE A+ P Y VT Sbjct: 124 LLGAIYLQHGIDTAREVILRLFGGLLDAAPTLGAGLDWKTSLQELTAARGMGAPSYVVTS 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +GPDHD FT VV + G+ S Sbjct: 184 -TGPDHDKEFTAVVVVMDTEYGSGVGRS 210 >gi|194476942|ref|YP_002049121.1| putative ribonuclease III [Paulinella chromatophora] gi|171191949|gb|ACB42911.1| putative ribonuclease III [Paulinella chromatophora] Length = 246 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 90/223 (40%), Gaps = 8/223 (3%) Query: 9 LEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LEK G NR L +++ALTH+S ++E+LEFLGD +L L + L +H+ + Sbjct: 22 LEKLDGINLRNRDLAMVDEALTHTSA--ELGINHEKLEFLGDAVLRLAAAEHLLSHYPTL 79 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 G+ S LVS +++ + + IR+ + D + T + A Sbjct: 80 SVGQSSALRAQLVSDRWLAEIGESCGIETVIRIGAAASGDQAARQTLRAESTEALIGALY 139 Query: 127 YLDGGIEVAGTFV---DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AL + + + K+ LQEW+ A+ P Y+ + Sbjct: 140 SSWENSLEPVNHWLSLHWQRSSIALLTDPYCYNWKSALQEWSQAEGLGLPNYRSKEINRL 199 Query: 184 DHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 D RF V I +G ++R AEQ AA L I Sbjct: 200 HGDLSRFHSCVFIETKYLGEGFGGARREAEQQAARSALNSIKI 242 >gi|15676584|ref|NP_273728.1| ribonuclease III [Neisseria meningitidis MC58] gi|22654075|sp|Q9K0C8|RNC_NEIMB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|7225914|gb|AAF41104.1| ribonuclease III [Neisseria meningitidis MC58] gi|261392941|emb|CAX50526.1| ribonuclease III (RNase III) [Neisseria meningitidis 8013] gi|316983658|gb|EFV62639.1| ribonuclease III [Neisseria meningitidis H44/76] gi|325139865|gb|EGC62396.1| ribonuclease III [Neisseria meningitidis CU385] gi|325200628|gb|ADY96083.1| ribonuclease III [Neisseria meningitidis H44/76] Length = 239 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 12 AAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 69 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + R + +D KT LQE A+ P+Y++ + G Sbjct: 129 SFDADFNTAEKVVRHLFADRVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGYA 188 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 189 NDSMFVISCDLGELGFVCRAKGTSR 213 >gi|255017842|ref|ZP_05289968.1| ribonuclease III [Listeria monocytogenes FSL F2-515] Length = 158 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 6/149 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ ++ L++ +G+ F N LL++A THSS + ++ + ERLEFLGD +L L +S Sbjct: 1 MN--QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LFN + EG ++ ++V + + A + + ++R+ K ++ A Sbjct: 59 DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSXYVRLGKGEEKAGGRTRPALLA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 DV ES I ALYLD GI+ TF+++ Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFP 147 >gi|72383017|ref|YP_292372.1| RNAse III [Prochlorococcus marinus str. NATL2A] gi|72002867|gb|AAZ58669.1| RNAse III [Prochlorococcus marinus str. NATL2A] Length = 247 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 86/209 (41%), Gaps = 5/209 (2%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 N + ++LTHSS + +YE LEFLGD +L L+ S + N + + GE S Sbjct: 32 KIKNILYINESLTHSSANSEI--NYENLEFLGDAVLRLIASDFIKNKYPYMQVGERSELR 89 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 + LVS +V +++++ S + + + +D + T + A +E Sbjct: 90 SHLVSDLWLEEVGKKIEINSVLVIGNKALRDKSANATIQAEATEALIGALYESLTIVEPI 149 Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS---GPDHDPRFTVV 192 ++ +W++++ + + + D+ RF Sbjct: 150 KDWLIPFWEEKSKEVLADPHKKNYKSALQELTQSKGLSIPIYKTIEIDKKHDNPKRFFCN 209 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + + A+G S + AE+ AA++ LK Sbjct: 210 VYVKNRSIAEGSGKSIKQAEKNAASKALK 238 >gi|146281615|ref|YP_001171768.1| ribonuclease III [Pseudomonas stutzeri A1501] gi|145569820|gb|ABP78926.1| ribonuclease III [Pseudomonas stutzeri A1501] Length = 208 Score = 93.8 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 69/195 (35%), Positives = 94/195 (48%), Gaps = 10/195 (5%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 ALTH S + + ERLEFLGD IL + LFNHF A+EG+LS LV ET Sbjct: 2 LLALTHRSYA---GRNNERLEFLGDAILNFVAGEALFNHFPQAREGQLSRLRARLVKGET 58 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 + +AR +L +R+ S K SI AD +E+LI A+YLD G++VA V + Sbjct: 59 LAVLARGFELGDHLRLGSGELKSGGYRRESILADTLEALIGAIYLDAGMDVARERVIAWL 118 Query: 144 KQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGL 198 +D KT LQE+ ++ P Y+V G H F V ++ + Sbjct: 119 ANELQGLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEPHCRTFFVECQVALLNDK 178 Query: 199 APAQGMDCSKRAAEQ 213 G S+R AEQ Sbjct: 179 --THGQGASRRIAEQ 191 >gi|262202009|ref|YP_003273217.1| ribonuclease III [Gordonia bronchialis DSM 43247] gi|262085356|gb|ACY21324.1| ribonuclease III [Gordonia bronchialis DSM 43247] Length = 262 Score = 93.8 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 6/194 (3%) Query: 22 LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL ALTH S ++ + ERLEFLGD +LG++I+ L+ + EGEL+ S+V Sbjct: 25 LLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVVITERLYLSYPDRPEGELAKIRASVV 84 Query: 80 SAETCSQVARELDLASFIRVSS---DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 + + VAR L R SI AD +ESL A++++ G+ + Sbjct: 85 NMHALADVARSLGPGGLGRHLYLGRGEEMTGGRDKDSILADGLESLFGAVFIEHGLATSK 144 Query: 137 TFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + + + ++G + A+ G+ P +GPDH+ FT V + Sbjct: 145 RVILRLFDDVIDRAGTLGAGLDWKTSLQELSAEQGLGPPQYQISSTGPDHNKEFTAVAVV 204 Query: 196 SGLAPAQGMDCSKR 209 +G + G+ +K+ Sbjct: 205 AGESLGNGVGRTKK 218 >gi|254804568|ref|YP_003082789.1| ribonuclease III family protein [Neisseria meningitidis alpha14] gi|254668109|emb|CBA04665.1| ribonuclease III family protein [Neisseria meningitidis alpha14] gi|254670529|emb|CBA06329.1| ribonuclease III [Neisseria meningitidis alpha153] Length = 310 Score = 93.8 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++KR+GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 83 AAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPKL 139 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 140 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 199 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + +R + +D KT LQE A+ P+Y++ + G Sbjct: 200 SFDADFNTAEKVVRHLFAERVRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 259 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 +D F V ++ L + S+ Sbjct: 260 NDSMFVVSCDLGELGFVCRAKGTSR 284 >gi|116788280|gb|ABK24820.1| unknown [Picea sitchensis] Length = 330 Score = 93.8 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 87/246 (35%), Gaps = 23/246 (9%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLF 60 S + LE + Y+F +L+ +++TH+S + Y+RLEFLGD +L LI+ + Sbjct: 78 SNVNVRYLESLLKYSFRVHTLVVESVTHASYKEPSFSGCYQRLEFLGDAVLDYLITLYFY 137 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + G L+ ++ V+ + +Q A + +L +R +S + + + + Sbjct: 138 KTYPGLSPGLLTDLRSAAVNNDCYAQAAVKCNLHQQLRHASSELHNQITEFAKLISSSSA 197 Query: 121 SLIAALYLDGG---------------------IEVAGTFVDKYWKQRALKSGKFRRDAKT 159 S T + + L+ + K Sbjct: 198 SGDHFFGWTTTEVAVPKVLGDLIESIAGAVLVDSEFDTQLVWNAMKPLLEPLVTPKTIKY 257 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAE 218 + S + V V + G + + +KR A+++AA + Sbjct: 258 QPVRELQELCQKEFYTCCFDDSQEEGTSTVKVEVRVKGDSYIETCEASNKRTAKKLAAEK 317 Query: 219 VLKREG 224 VLK Sbjct: 318 VLKSLK 323 >gi|121634484|ref|YP_974729.1| ribonuclease III [Neisseria meningitidis FAM18] gi|120866190|emb|CAM09930.1| putative ribonuclease III [Neisseria meningitidis FAM18] Length = 267 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 40 AAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 96 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 97 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 156 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + R + +D KT LQE A+ P+Y++ + G Sbjct: 157 SFDADFNTAEKVVRHLFADRVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 216 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 +D F V ++ L + S+ Sbjct: 217 NDSMFVVSCDLGELGFVCRAKGTSR 241 >gi|295670335|ref|XP_002795715.1| RNase3 domain-containing protein [Paracoccidioides brasiliensis Pb01] gi|226284800|gb|EEH40366.1| RNase3 domain-containing protein [Paracoccidioides brasiliensis Pb01] Length = 1346 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 65/220 (29%), Gaps = 11/220 (5%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + R+GY F LL A TH+S S Y+RLEFLGD +L ++ L++ + Sbjct: 1095 QQIGDRLGYRFKYPRLLSSAFTHASYPTVWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYP 1154 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 L+ + S + ++ +++E+ I Sbjct: 1155 DRDPQWLTEH-------KVFSNHLKMRGWKLKLQRLKASIHQTFGQRPVTLRNMLEAYIG 1207 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ-EWAHAKFGVTPEYKVTFRSGP 183 A+++D + D Sbjct: 1208 AIFVDSNFSFEVVEDFFQQYPKKYFEDISIYDTFANKHPTACTLPRTAFMPAGEVDFVDA 1267 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I A+G+ S A+ A+ L + Sbjct: 1268 AECRVF-AAVIIHDEFVAEGIASSAGYAKVKASENALAKL 1306 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 12/93 (12%) Query: 20 RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +ALT H + ++YERLEFLGD L + S LF Sbjct: 914 PELALEALTKDSDNTEEHRAEQIHFQRGMGKNYERLEFLGDCFLKMSTSISLFAMNADND 973 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 E + V+ L+ + A L + F+R Sbjct: 974 EFDFHVKRMCLICNQNLFNTAMSLGIYEFVRTQ 1006 >gi|255027417|ref|ZP_05299403.1| ribonuclease III [Listeria monocytogenes FSL J2-003] Length = 151 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 6/149 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ ++ L++ +G+ F + LL++A THSS + ++ + ERLEFLGD +L L +S Sbjct: 1 MN--QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LFN + EG ++ ++V + + A + + ++R+ K ++ A Sbjct: 59 DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 DV ES I ALYLD GI+ TF+++ Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFP 147 >gi|317420155|emb|CBN82191.1| Ribonuclease 3 [Dicentrarchus labrax] Length = 1569 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 65/211 (30%), Positives = 99/211 (46%), Gaps = 10/211 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + ++ E IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1359 KLTSFEDSIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1418 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + F + ++ V T AD++ES Sbjct: 1419 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQDFAITNDKTKRPVALR-TKTLADLLESF 1477 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175 IAALY+D +E TF++ + R + D K++LQ+ K P Y Sbjct: 1478 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1537 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K GP H +TV V G G Sbjct: 1538 KTLQTVGPSHARTYTVAVYFKGERIGCGKGP 1568 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 49/114 (42%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 1023 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1082 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 + S + A+ E+LI L ++A T Sbjct: 1083 LYAHGPDLCRESDLRHAMANCFEALIEHFLLTRQTQIAHTCRRMVRGAYKRCHF 1136 Score = 40.7 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 19/31 (61%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F R LL+ A+TH S ++ + Sbjct: 939 LDKLIGYVFKERCLLQLAMTHPSHHLNFGMN 969 >gi|163786802|ref|ZP_02181250.1| hypothetical protein FBALC1_16492 [Flavobacteriales bacterium ALC-1] gi|159878662|gb|EDP72718.1| hypothetical protein FBALC1_16492 [Flavobacteriales bacterium ALC-1] Length = 247 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 6/205 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61 + L+K +G+ ++SL KA TH S++ + +YERLEF+GD +L +I+ LF Sbjct: 20 FLELKKILGFKPKSKSLYIKAFTHRSMNIKNKNGNAINYERLEFVGDAMLSSVIAAYLFE 79 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG L+ + +VS E +++ ++L L ++ + ++ +V + Sbjct: 80 QVPHGDEGYLTKMRSKVVSREHLNELGKDLGLIDLVQSRIPKSNFGNNIHGNLFEALVGA 139 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + + V + GK ++ K T +Y V + Sbjct: 140 IYLDKGYKFCEKFIYKRVINPYVDIETLEGKVISYKSLLIEWCQKEKN--TFDYNVYEDT 197 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDC 206 G D F+V + I+ ++ Sbjct: 198 GKDELKHFSVKLSINDKVVSKARAT 222 >gi|307198394|gb|EFN79336.1| Endoribonuclease dcr-1 [Harpegnathos saltator] Length = 1479 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 1/140 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++EKR+GY F NR+ L +A TH S S + + Y+RLEFLGD +L LI+ ++ + Sbjct: 1277 DSIEKRLGYKFNNRAYLLQAFTHPSYSVNRITDCYQRLEFLGDAVLDFLITCHIYEFCGN 1336 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 G L+ ++LV+ T + +A L + + + ++ + Q D ++ Sbjct: 1337 LSPGALTDLRSALVNNITFACLAVRYGLHTCLLAYAPQLHEMINRFVKFQEDRNYAINDE 1396 Query: 126 LYLDGGIEVAGTFVDKYWKQ 145 L E + Sbjct: 1397 LLWVLLEEEDCNIAEYIDVP 1416 >gi|221126960|ref|XP_002167020.1| PREDICTED: similar to ribonuclease III, nuclear [Hydra magnipapillata] Length = 576 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 61/216 (28%), Positives = 100/216 (46%), Gaps = 15/216 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTH--SSISHS--YQESYERLEFLGDRILGLLISTLLF 60 ++ TLEK+IG F + SLL KALTH + + +YE+LEFLGD IL + S L+ Sbjct: 354 KFVTLEKKIGVEFTHISLLVKALTHSVKGLDDETITRGNYEQLEFLGDAILKYICSDYLY 413 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 HF + +EG L++ SL++ + ++ + E+DL +I + + +DV E Sbjct: 414 KHFPNHQEGHLTLLRISLINLKCLAKASEEIDLIKYIVFHPNHEPS--TTNEKTFSDVFE 471 Query: 121 SLIAALYLDGG--IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE---- 174 + +AAL+LD G V + + + + K++LQ+ + + T Sbjct: 472 AFLAALHLDKGLLHCQKLIEVCILSRLKEFILSQDWLEPKSQLQQCCNTYYNKTKPDKVE 531 Query: 175 ---YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 YK S + F V V +G G S Sbjct: 532 HPVYKRIKLSTINGVQNFKVGVYFNGKRLGTGQGRS 567 >gi|158706447|sp|A4RKC3|DCL1_MAGO7 RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease DCL1; Includes: RecName: Full=ATP-dependent helicase DCL1 Length = 1591 Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 80/266 (30%), Gaps = 54/266 (20%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S ++ ++GY F N LL A H S + SY+RLEFLGD +L ++ LF Sbjct: 1244 SQIKNKMGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLLDMVCVDYLFKKHP 1303 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102 L+ ++VS + VA L + Sbjct: 1304 DKDPQWLTEHKMAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEWAELVTKKREEARQ 1363 Query: 103 --------------LRKDVCSFMTSIQADVVESLIAALYLDGGIEV------AGTFVDKY 142 D++E+ + AL++D G + + Y Sbjct: 1364 LAVRRGQREEDYARDFWIEVHHPPKCLPDILEAYVGALFVDTGYDYSAVVGFFDRHIKPY 1423 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD---------HDPRFTVVV 193 + ++ + T + +FG + + PD + Sbjct: 1424 FADMSIYDMYSSKHPVTHITSIITTQFGCSSFRLMV-HEIPDDVQGEGLVTGAVKVVAAC 1482 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEV 219 I G + S R A+ A + Sbjct: 1483 MIHGEVRCHAVAASGRYAKLAVAKQA 1508 Score = 37.6 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 ++YERLEFLGD L + S L+ + + R + + A E Sbjct: 1074 FQSGMGQNYERLEFLGDCFLKMATSIALYTLVEGDEFEYHVERML-DICNKNLLNWALES 1132 Query: 92 DLASFIR 98 +L IR Sbjct: 1133 NLQEHIR 1139 >gi|145613552|ref|XP_363615.2| hypothetical protein MGG_01541 [Magnaporthe oryzae 70-15] gi|145020615|gb|EDK04744.1| hypothetical protein MGG_01541 [Magnaporthe oryzae 70-15] Length = 1534 Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 80/266 (30%), Gaps = 54/266 (20%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S ++ ++GY F N LL A H S + SY+RLEFLGD +L ++ LF Sbjct: 1187 SQIKNKMGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLLDMVCVDYLFKKHP 1246 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102 L+ ++VS + VA L + Sbjct: 1247 DKDPQWLTEHKMAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEWAELVTKKREEARQ 1306 Query: 103 --------------LRKDVCSFMTSIQADVVESLIAALYLDGGIEV------AGTFVDKY 142 D++E+ + AL++D G + + Y Sbjct: 1307 LAVRRGQREEDYARDFWIEVHHPPKCLPDILEAYVGALFVDTGYDYSAVVGFFDRHIKPY 1366 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD---------HDPRFTVVV 193 + ++ + T + +FG + + PD + Sbjct: 1367 FADMSIYDMYSSKHPVTHITSIITTQFGCSSFRLMV-HEIPDDVQGEGLVTGAVKVVAAC 1425 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEV 219 I G + S R A+ A + Sbjct: 1426 MIHGEVRCHAVAASGRYAKLAVAKQA 1451 Score = 37.6 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 ++YERLEFLGD L + S L+ + + R + + A E Sbjct: 1017 FQSGMGQNYERLEFLGDCFLKMATSIALYTLVEGDEFEYHVERML-DICNKNLLNWALES 1075 Query: 92 DLASFIR 98 +L IR Sbjct: 1076 NLQEHIR 1082 >gi|225430894|ref|XP_002269915.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1380 Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 92/243 (37%), Gaps = 25/243 (10%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + S LE + Y+F + SLL +ALTH S Y+RLEFLGD +L L++ L++ Sbjct: 1133 VNVSYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHK 1192 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-------------- 108 + G L+ ++ V+ + +Q A + L I SS Sbjct: 1193 YPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVES 1252 Query: 109 -------SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 S + DV+ESL A+ +D F L + + + Sbjct: 1253 TFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARE 1312 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K + V ++G T+ VE +G KR A ++A+ EVLK Sbjct: 1313 LGELCQKEHYDIKRVVVSQNGKA---SVTIEVEANGAKHKHTSTSDKRTATKLASKEVLK 1369 Query: 222 REG 224 Sbjct: 1370 SLK 1372 >gi|297735235|emb|CBI17597.3| unnamed protein product [Vitis vinifera] Length = 1340 Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 92/243 (37%), Gaps = 25/243 (10%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + S LE + Y+F + SLL +ALTH S Y+RLEFLGD +L L++ L++ Sbjct: 1093 VNVSYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHK 1152 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-------------- 108 + G L+ ++ V+ + +Q A + L I SS Sbjct: 1153 YPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVES 1212 Query: 109 -------SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 S + DV+ESL A+ +D F L + + + Sbjct: 1213 TFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARE 1272 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K + V ++G T+ VE +G KR A ++A+ EVLK Sbjct: 1273 LGELCQKEHYDIKRVVVSQNGKA---SVTIEVEANGAKHKHTSTSDKRTATKLASKEVLK 1329 Query: 222 REG 224 Sbjct: 1330 SLK 1332 >gi|183981795|ref|YP_001850086.1| ribonuclease III Rnc [Mycobacterium marinum M] gi|183175121|gb|ACC40231.1| ribonuclease III Rnc [Mycobacterium marinum M] Length = 241 Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 6/193 (3%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 L+ ALTH S ++ + ERLEFLGD +LGL I+ LF+ EG+L+ S+ Sbjct: 17 ELVTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDELFHRHPERSEGDLAKLRASV 76 Query: 79 VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 V+ + + VAR L L + + + + +SI AD +ESL+ A+YL G+EVA Sbjct: 77 VNTQALADVARHLSEHGLGAHMLLGRGEANTGGADKSSILADGMESLLGAIYLHHGMEVA 136 Query: 136 GTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + + + + A + +GPDH FT VV Sbjct: 137 REAILRIFGPLLDAAPTLGAGLDWKTSLQELTASRSLGAPSYAVTSTGPDHHKEFTAVVV 196 Query: 195 ISGLAPAQGMDCS 207 ++ G+ S Sbjct: 197 VNNTEYGSGVGRS 209 >gi|118617606|ref|YP_905938.1| ribonuclease III [Mycobacterium ulcerans Agy99] gi|118569716|gb|ABL04467.1| ribonuclease III Rnc [Mycobacterium ulcerans Agy99] Length = 243 Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 6/193 (3%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 L+ ALTH S ++ + ERLEFLGD +LGL I+ LF+ EG+L+ S+ Sbjct: 19 ELVTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDELFHRHPERSEGDLAKLRASV 78 Query: 79 VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 V+ + + VAR L L + + + + +SI AD +ESL+ A+YL G+EVA Sbjct: 79 VNTQALADVARHLSDHGLGAHMLLGRGEANTGGADKSSILADGMESLLGAIYLHHGMEVA 138 Query: 136 GTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + + + + A + +GPDH FT VV Sbjct: 139 REAILRIFGPLLDAAPTLGAGLDWKTSLQELTASRSLGAPSYAVTSTGPDHHKEFTAVVV 198 Query: 195 ISGLAPAQGMDCS 207 ++ G+ S Sbjct: 199 VNNTEYGSGVGRS 211 >gi|189908862|gb|ACE60552.1| dicer-like protein 2 [Brassica rapa] Length = 1392 Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 82/242 (33%), Gaps = 21/242 (8%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +E + Y F ++SLL +ALTH S Y+RLEFLGD +L LI+ L+ Sbjct: 1146 VNVRYMESLLNYKFKDKSLLVEALTHGSYMIPEIPRCYQRLEFLGDSVLDYLITKHLYGE 1205 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + + G L+ ++ V+ E +QVA + +L + +S S S + Sbjct: 1206 YPNLSPGLLTDMRSASVNNECYAQVAVKSNLHKHVLHASHDLHKHISRTVSEFERLSSVQ 1265 Query: 123 IAALYLD-------------------GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 + + V + L K Sbjct: 1266 SSFGWESEIAFPKVLGDVIESLAGAIHVDSGYNKEVVFACIKPLLGCMITPETVKLHPVR 1325 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 + + + F V VE ++ A K+ A+++A EVL Sbjct: 1326 ELTELCQKAQFELSKVKGFENGEAFFPVEVEAKEMSFAHTARAFDKKMAKKLAYKEVLNS 1385 Query: 223 EG 224 Sbjct: 1386 LK 1387 >gi|238784187|ref|ZP_04628200.1| Ribonuclease 3 [Yersinia bercovieri ATCC 43970] gi|238796735|ref|ZP_04640241.1| Ribonuclease 3 [Yersinia mollaretii ATCC 43969] gi|238714896|gb|EEQ06895.1| Ribonuclease 3 [Yersinia bercovieri ATCC 43970] gi|238719466|gb|EEQ11276.1| Ribonuclease 3 [Yersinia mollaretii ATCC 43969] Length = 204 Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 66/190 (34%), Positives = 96/190 (50%), Gaps = 6/190 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +ALTH S S + ERLEFLGD IL +I+ L+ F EG++S +LV T Sbjct: 2 LQALTHRSASS---KHNERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNT 58 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 +++ARE DL +R+ K SI AD VE+LI ++LD I + + ++ Sbjct: 59 LAEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHMIERLILDWY 118 Query: 144 KQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200 + R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 119 RSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEP 178 Query: 201 AQGMDCSKRA 210 G S+R Sbjct: 179 VIGTGSSRRK 188 >gi|315044595|ref|XP_003171673.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893] gi|311344016|gb|EFR03219.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893] Length = 1518 Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 34/251 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64 + ++ ++GY F LL A H S Y+RLEFLGD +L ++ LF + Sbjct: 1236 NQIKSKLGYCFRYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------------- 103 L+ ++VS + +A L+L + S+ Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355 Query: 104 ---RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155 + D+VE+ + A+++D + +++ + F Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAMFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFAN 1415 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT---VVVEISGLAPAQGMDCSKRAAE 212 A Y + P D V + A+G+ S R A+ Sbjct: 1416 KHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTVRALAAVCVHDDIVAEGVAISPRHAK 1475 Query: 213 QVAAAEVLKRE 223 A+ L+ Sbjct: 1476 LKASQNALQIL 1486 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 16/112 (14%) Query: 1 MSALRYSTLE--KRIGYAFANRSLLEKALTHSS------------ISHSYQESYERLEFL 46 M + LE +++ L +ALT S ++YERLEFL Sbjct: 1021 MESY-LIALEACEKLQLKIP-PELALEALTKDSENTEDYGMEQIKFQSGMGKNYERLEFL 1078 Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 GD L + S LF E + V+ L+ + A L++ FIR Sbjct: 1079 GDCFLKMATSISLFAMNPDNDEYDYHVKRMLLICNQNLFNNAIILEIFKFIR 1130 >gi|161869625|ref|YP_001598793.1| ribonuclease III [Neisseria meningitidis 053442] gi|161595178|gb|ABX72838.1| ribonuclease III [Neisseria meningitidis 053442] Length = 310 Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 83 AAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPKL 139 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+D+ + + + K SI AD +E++ AA+ Sbjct: 140 TEGELSRLRASLVNEGVLAEMAAEMDVGEGLYLGAGELKSGGFRRPSILADAMEAMFAAV 199 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + R +D KT LQE A+ P+Y++ + G Sbjct: 200 SFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 259 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 +D F + ++ L S+ Sbjct: 260 NDSMFVISCDLGELGFVCYAKGTSR 284 >gi|297832974|ref|XP_002884369.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp. lyrata] gi|297330209|gb|EFH60628.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp. lyrata] Length = 2033 Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 84/231 (36%), Gaps = 16/231 (6%) Query: 10 EKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E + Y+F ++SLL +ALTH S Y+RLEFLGD +L LI+ L++ + Sbjct: 1798 ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSP 1857 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ ++ V+ E + VA + +L I +S + S S Sbjct: 1858 GLLTDMRSASVNNECYALVAVKENLHKHILHASHVLHKHISRTVSEFEQSSLQSTFGWEC 1917 Query: 129 DGGIE--------------VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 D + +K ++K ++ + + Sbjct: 1918 DISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQ 1977 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 S FTV V+ ++ A K+ A+++A EVL Sbjct: 1978 KSQFELSKAKDFNYFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 2028 >gi|156553056|ref|XP_001605287.1| PREDICTED: similar to dicer-1 [Nasonia vitripennis] Length = 1917 Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 81/239 (33%), Gaps = 32/239 (13%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y +LE+ IGY F NRS L +A TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1657 YDSLERSIGYTFRNRSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1716 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 G L+ ++LV+ + +A + R S V IQ + S+ Sbjct: 1717 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLNTVIDRFVRIQEENGHSISE 1776 Query: 125 ALYLDGGIEVAGTFVDKYWK---------------------------QRALKSGKFRRDA 157 YL G E + + Sbjct: 1777 EYYLIGEREFEEAEEAEDVEVPKALGDVFESLAGAIYLDSNMSLDAVWAVYFEIMKSEIE 1836 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAE 212 + + T + G R V V++ G +G+ + R A+ Sbjct: 1837 QFSANVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAK 1895 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 2/107 (1%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G++ + SL+ +ALT S+ + + ERLE +GD L I+T LF +++ EG+LS Sbjct: 1370 GHSGPSPSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLFCTYNNIHEGKLSH 1427 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + VS ++ R+ L + S D +E Sbjct: 1428 LRSKQVSNLNLYRLGRQKMLGESMIASKFEPHDNWLPPCYYVPKELE 1474 >gi|302765743|ref|XP_002966292.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii] gi|300165712|gb|EFJ32319.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii] Length = 1730 Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 81/237 (34%), Gaps = 30/237 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+++ + LE IGY F +S+L +A++H+S + Y+RLEF+GD +L LI+ LF Sbjct: 1379 MNSIDFEKLELAIGYKFQMKSVLVEAISHASRPSAGVPCYQRLEFVGDAVLDHLITRYLF 1438 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV- 119 + G L+ + V+ E ++++ + +R S + + Sbjct: 1439 FRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHLHLRHGSSALEAQIKDFVKDIQSELD 1498 Query: 120 -----------------------ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 A G V + + + Sbjct: 1499 KPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLAADEVWKVFERLLEPMVTPDTLPVH 1558 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ELQE + S TV V + G+ + K+ A++ Sbjct: 1559 PVRELQERCQQQAEGLEYRASREGSIA------TVEVFVDGVQIGCAQNTQKKMAQK 1609 Score = 47.2 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 6/75 (8%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-----QGMD-CSKRAA 211 + L + + P+Y++ SGP H RFT V ++ +G S + A Sbjct: 1645 RQTLNDICLQRQWPMPQYRLLSESGPAHAKRFTYTVRVNTRERGWTDECEGQAMPSMKKA 1704 Query: 212 EQVAAAEVLKREGIW 226 + AA +L+ W Sbjct: 1705 KDSAALVLLEVLKQW 1719 Score = 46.1 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ IG+ +L +ALT +S ++ SYER E LGD L ++S LF Sbjct: 1160 QLKHEIGFPIPAAKVL-EALTAASCQETF--SYERAELLGDAYLKWVVSRRLFIKHPRKH 1216 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ VS + A L S+I+ Sbjct: 1217 EGQLTRMRQQTVSNMVLYEFAISKSLQSYIQ 1247 >gi|302793023|ref|XP_002978277.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii] gi|300154298|gb|EFJ20934.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii] Length = 1728 Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 81/237 (34%), Gaps = 30/237 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+++ + LE IGY F +S+L +A++H+S + Y+RLEF+GD +L LI+ LF Sbjct: 1379 MNSIDFEKLELAIGYKFQMKSVLVEAISHASRPSAGVPCYQRLEFVGDAVLDHLITRYLF 1438 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV- 119 + G L+ + V+ E ++++ + +R S + + Sbjct: 1439 FRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHLHLRHGSSALEAQIKDFVKDIQSELD 1498 Query: 120 -----------------------ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 A G V + + + Sbjct: 1499 KPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLAADEVWKVFERLLEPMVTPDTLPVH 1558 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ELQE + S TV V + G+ + K+ A++ Sbjct: 1559 PVRELQERCQQQAEGLEYRASREGSIA------TVEVFVDGVQIGCAQNTQKKMAQK 1609 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-----Q 202 +++ K + L + + P+Y++ SGP H RFT V ++ + Sbjct: 1635 MENDKANAFTRQTLNDICLQRQWPMPQYRLLSESGPAHAKRFTYTVRVNTRERGWTDECE 1694 Query: 203 GMD-CSKRAAEQVAAAEVLKREGIW 226 G S + A+ AA +L+ W Sbjct: 1695 GQAMPSMKKAKDSAALVLLEVLKQW 1719 Score = 46.1 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ IG+ +L +ALT +S ++ SYER E LGD L ++S LF Sbjct: 1160 QLKHEIGFPIPAAKVL-EALTAASCQETF--SYERAELLGDAYLKWVVSRRLFIKHPRKH 1216 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ VS + A L S+I+ Sbjct: 1217 EGQLTRMRQQTVSNMVLYEFAISKSLQSYIQ 1247 >gi|307448396|pdb|3O2R|B Chain B, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni gi|307448398|pdb|3O2R|D Chain D, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 144 Score = 93.1 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 45/130 (34%), Positives = 73/130 (56%), Gaps = 1/130 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ + Y F +++LL ALTH S + ERLEFLGD +L L++ LF+ F Sbjct: 1 NIEKLEQSLTYEFKDKNLLIHALTHKSFXKK-SYNNERLEFLGDAVLDLVVGEYLFHKFA 59 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E++I Sbjct: 60 KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIG 119 Query: 125 ALYLDGGIEV 134 A++L+ G E Sbjct: 120 AIHLEAGFEF 129 >gi|294504509|ref|YP_003568571.1| ribonuclease III [Yersinia pestis Z176003] gi|169749969|gb|ACA67487.1| Ribonuclease III [Yersinia pseudotuberculosis YPIII] gi|186699329|gb|ACC89958.1| ribonuclease III [Yersinia pseudotuberculosis PB1/+] gi|262362499|gb|ACY59220.1| ribonuclease III [Yersinia pestis D106004] gi|262366496|gb|ACY63053.1| ribonuclease III [Yersinia pestis D182038] gi|294354968|gb|ADE65309.1| ribonuclease III [Yersinia pestis Z176003] Length = 204 Score = 93.1 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 66/190 (34%), Positives = 95/190 (50%), Gaps = 6/190 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +ALTH S S + ERLEFLGD IL +I+ L+ F EG++S +LV T Sbjct: 2 LQALTHRSASS---KHNERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNT 58 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 +++ARE DL +R+ K SI AD VE+LI ++LD I + +++ Sbjct: 59 LAEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIHTIERLILEWY 118 Query: 144 KQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200 R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 119 HSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEP 178 Query: 201 AQGMDCSKRA 210 G S+R Sbjct: 179 VIGTGSSRRK 188 >gi|307448395|pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni gi|307448397|pdb|3O2R|C Chain C, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 170 Score = 93.1 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 48/134 (35%), Positives = 77/134 (57%), Gaps = 4/134 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ + Y F +++LL ALTH S SY + ERLEFLGD +L L++ LF Sbjct: 25 MKNI--EKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 80 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + F EG+LS +LV+ ++ +++A L+L FI +S + SI +D +E Sbjct: 81 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALE 140 Query: 121 SLIAALYLDGGIEV 134 ++I A++L+ G E Sbjct: 141 AIIGAIHLEAGFEF 154 >gi|158312991|ref|YP_001505499.1| ribonuclease III [Frankia sp. EAN1pec] gi|158108396|gb|ABW10593.1| Ribonuclease III [Frankia sp. EAN1pec] Length = 306 Score = 93.1 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 99/203 (48%), Gaps = 8/203 (3%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL++ALTH S ++ + ERLEFLGD +LGL+++ LF EG+L+ + Sbjct: 23 DPELLDRALTHRSYAYENGGLPTNERLEFLGDAVLGLIVTAALFRRHPDLPEGQLAKQRA 82 Query: 77 SLVSAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S+V+ + VAR + + ++ + SI AD +E++I A+YL ++ Sbjct: 83 SVVNMRALADVARRIGTAGIGPYLLLGRGEEATGGRDKPSILADTLEAVIGAVYLSNSLD 142 Query: 134 VAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 VA FV + + D KT LQE P+Y VT GPDH RFT Sbjct: 143 VASGFVHRLFDPLLDEAAGRGAGLDWKTSLQEQTALLGLGPPDYAVTEA-GPDHAKRFTA 201 Query: 192 VVEISGLAPAQGMDCSKRAAEQV 214 ++G +G SK+ AEQ Sbjct: 202 FARVAGEVLGEGEGGSKKEAEQR 224 >gi|296434189|tpg|DAA12515.1| TPA_exp: Dicer 1 protein [Naumovia castellii] Length = 610 Score = 93.1 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 77/220 (35%), Gaps = 15/220 (6%) Query: 18 ANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHFDSAKE 68 ++++L A H S+ + + S ERLEFLGD LG L++ +++ + A E Sbjct: 116 SDQNLENLAFIHRSLPNMNVKLTELQKTVMSNERLEFLGDSWLGALVAYIIYKKYPYANE 175 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVESLIAALY 127 G LS ++V+ ++ +L ++ + +T AD VE+ I AL Sbjct: 176 GALSKMKEAIVNNNNLEKICEKLGFKERLKENIPRSSMKIKDRLTKNYADCVEAYIGALV 235 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDA-----KTELQEWAHAKFGVTPEYKVTFRSG 182 +D + + + A Sbjct: 236 IDRFSTEFNDVALWLEELSEEHFIELGPMMVKEPLNKNAKGELGAFLQFNNIGAKISYKR 295 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + F V V + G + R AEQ AA E L + Sbjct: 296 LNDKSPFKVEVRLGNNLLGIGDGSNVREAEQRAAMEALAQ 335 Score = 39.5 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%) Query: 189 FTVVVEISGL--APAQGMDCSKRAAEQVAAAEVL 220 F V I G+ +G SK+ ++ +A + L Sbjct: 562 FYTVCFIKGVGVEIGKGHGRSKKISQHKSAEDAL 595 >gi|330860319|emb|CBX70633.1| ribonuclease 3 [Yersinia enterocolitica W22703] Length = 204 Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 66/190 (34%), Positives = 94/190 (49%), Gaps = 6/190 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +ALTH S S + ERLEFLGD IL +I+ L+ F EG++S +LV T Sbjct: 2 LQALTHRSASS---KHNERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNT 58 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 +++ARE DL +R+ K SI AD VE+LI ++LD I + ++ Sbjct: 59 LAEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHTIERLILAWY 118 Query: 144 KQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200 R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 119 HSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEP 178 Query: 201 AQGMDCSKRA 210 G S+R Sbjct: 179 VIGTGSSRRK 188 >gi|310831171|ref|YP_003969814.1| putative dsRNA-specific ribonuclease III [Cafeteria roenbergensis virus BV-PW1] gi|309386355|gb|ADO67215.1| putative dsRNA-specific ribonuclease III [Cafeteria roenbergensis virus BV-PW1] Length = 362 Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 92/245 (37%), Gaps = 39/245 (15%) Query: 19 NRSLLEKALTHSSISHS------------------------YQESYERLEFLGDRILGLL 54 + ++++TH S +SYERLE+LGDR++ L+ Sbjct: 56 HIEYFQESMTHKSYLKKDIFSNNILVKAKKELGNPEGLLELRDKSYERLEYLGDRVIKLI 115 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 +S LF+ + EG ++ + S+++R++ L+ + +S + Sbjct: 116 VSMYLFHRYPKQDEGFMTKLQTVIEDKNNLSKMSRDMGLSKYFIISKQIENIRGREAEKF 175 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVT 172 D+ E+ ALYL G + + + + K ++ K +L + H++ Sbjct: 176 NEDIFEAFFGALYLSNGFNSCLELLLNLLESQIDYAEKLYRNKNYKDQLLRYYHSQKWGY 235 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLA-------------PAQGMDCSKRAAEQVAAAEV 219 PEY GP H F + V+ G+ KR AEQ A+ Sbjct: 236 PEYYQIGEFGPSHKRNFIMGVKKDEHKETIITENNKLEIGLGYGVGNKKRDAEQSASKMA 295 Query: 220 LKREG 224 L G Sbjct: 296 LILLG 300 >gi|289643138|ref|ZP_06475267.1| ribonuclease III [Frankia symbiont of Datisca glomerata] gi|289507030|gb|EFD28000.1| ribonuclease III [Frankia symbiont of Datisca glomerata] Length = 272 Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 6/198 (3%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LLE ALTH S ++ + ERLEFLGD +L L+++ LFN EG+L+ + Sbjct: 23 DVDLLELALTHRSYAYEQGGLPTNERLEFLGDSVLSLVVTDALFNRHPDLPEGQLAKQRA 82 Query: 77 SLVSAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S+V+ ++VAR L + ++ + SI AD +E+LI A+YL G+ Sbjct: 83 SVVNMRALAEVARTLGEKGIGPYLLLGRGEETTGGRDKASILADTLEALIGAVYLSSGLG 142 Query: 134 VAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 A FV + + + +G+ + A + P GPDH RFT Sbjct: 143 SASEFVHRLFDPLLDVAAGRGAGLDWKTSLQERTASLLLGPPEYEVDEFGPDHAKRFTAR 202 Query: 193 VEISGLAPAQGMDCSKRA 210 ++G G SK+ Sbjct: 203 AVVAGRVLGHGDGGSKKE 220 >gi|26553818|ref|NP_757752.1| ribonuclease III [Mycoplasma penetrans HF-2] gi|26453825|dbj|BAC44156.1| ribonuclease III [Mycoplasma penetrans HF-2] Length = 244 Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 78/221 (35%), Gaps = 3/221 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 L + + ++G L +ALTH+S ++ + +Y+RLEFLGD ++ + + Sbjct: 13 LDVTKILNKLGIKTNKYYLYVEALTHNSYNNEKKVGYTYQRLEFLGDAVIS-KLISEFLF 71 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 S E +++ +LV++E + + EL L + + + + + + Sbjct: 72 KNKSLDEQKMTEIRKNLVNSEIFKKASEELGLLDYAFIGKGINLENDTKKIKADLFEAFA 131 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + + + + + + +++ Sbjct: 132 GAIFIDKGEDEVWKYLEKTILKYYENNELVNPIDYKSRIQELFQYNIAKKHKKAHFYYQT 191 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + F + + G+ +K+ A++ AA ++ Sbjct: 192 VEIENNMFKSSLIYDEIIYGVGVGKTKKEAQKSAAKIAYEK 232 >gi|297848414|ref|XP_002892088.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp. lyrata] gi|297337930|gb|EFH68347.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp. lyrata] Length = 1962 Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 81/230 (35%), Gaps = 18/230 (7%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ + LE+ + + F + LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1608 KSIDFVGLERALKFEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFF 1667 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD---- 117 + S G L+ + V+ E ++VA + L ++R S + Sbjct: 1668 TYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSK 1727 Query: 118 ---------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 ++ + I A A K + + Sbjct: 1728 PGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHP 1787 Query: 169 FGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGMDCSKRAAEQ 213 E G ++ TV V I G+ + K+ A++ Sbjct: 1788 VRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQK 1837 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 1398 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRYLFLKYPQKH 1454 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1455 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1485 Score = 39.5 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 8/74 (10%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMDCSKRA 210 + L + K P Y+ GP H RFT V ++ + M S + Sbjct: 1886 RQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPM-PSVKK 1944 Query: 211 AEQVAAAEVLKREG 224 A+ AA +L+ Sbjct: 1945 AKDSAAVLLLQLLN 1958 >gi|158300291|ref|XP_320248.4| AGAP012289-PA [Anopheles gambiae str. PEST] gi|157013088|gb|EAA00264.4| AGAP012289-PA [Anopheles gambiae str. PEST] Length = 1672 Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 86/248 (34%), Gaps = 31/248 (12%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E +GY F NR+ L +A TH+S S+S SY++LEFLGD +L L+S ++ S Sbjct: 1424 ERIEATLGYRFRNRTYLLQAFTHTSYTSNSLTGSYQQLEFLGDAVLDFLVSMYIYERNPS 1483 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM---TSIQADVVESL 122 G+L+ ++LV+ + V +L I S + D + + Sbjct: 1484 MSPGQLTDLRSALVNNVNLACVLVRNELHRHILSQSPMLTDAIGKFVAVHRCHRNQGSNW 1543 Query: 123 IAALYLDGGIEVAGTFVDK-------------YWKQRALKSGKFRRDAKTELQEWAHAKF 169 + L + +A + L++ Sbjct: 1544 VRLLTEESDTPMAEYVDVPKVLGDVLEALIGAIYLDSGNDLAATWEVCFRLLRDEIADFT 1603 Query: 170 GVTPEYKVTF-RSGPDHDPRFTV------VVEIS-------GLAPAQGMDCSKRAAEQVA 215 TP V P+ P F+ VV + G +K A++ A Sbjct: 1604 RKTPIQVVRQLYEHPEASPHFSAPFVEEEVVYVKLSYTHRSQRQTVYGFGKNKDDAKRAA 1663 Query: 216 AAEVLKRE 223 A L + Sbjct: 1664 AKIALSKI 1671 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +ALT S + + + ER E LGD L +S + S EG L+ +VS Sbjct: 1199 LLQALTTKSSADVF--NLERFEVLGDAFLKFAVSVYILFRHTSWHEGYLTTCKGRMVSNR 1256 Query: 83 TCSQVARELD 92 A Sbjct: 1257 NLLYCAMGYG 1266 >gi|210633204|ref|ZP_03297720.1| hypothetical protein COLSTE_01633 [Collinsella stercoris DSM 13279] gi|210159209|gb|EEA90180.1| hypothetical protein COLSTE_01633 [Collinsella stercoris DSM 13279] Length = 241 Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 72/195 (36%), Positives = 98/195 (50%), Gaps = 4/195 (2%) Query: 1 MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57 MS + ++ G AF + SLL A+TH S SYERLEFLGD ILG +++ Sbjct: 1 MSIREKLERAQEICGRAFNDTSLLRSAITHPSAVEGEPVSASYERLEFLGDSILGSVVAL 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + EG+L+ SLVS T S V REL + I + + + M S + Sbjct: 61 SLFKTYGDFDEGKLTRLKVSLVSGATLSDVGRELGIDQVIILGASEQGTGARGMHSALEN 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 V E+L+ ALYLDGG E A F+ + K A + + + K+ LQE + P YK Sbjct: 121 VYEALVGALYLDGGWEAAEAFIMRTLKPHLATERAEHPSNPKSFLQECVQSDHMEAPSYK 180 Query: 177 VTFRSGPDHDPRFTV 191 V GP H+P FT Sbjct: 181 VVGEEGPAHEPTFTA 195 >gi|255589974|ref|XP_002535144.1| dicer-1, putative [Ricinus communis] gi|223523936|gb|EEF27239.1| dicer-1, putative [Ricinus communis] Length = 259 Score = 92.7 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 19/220 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+ + Y F NRSLLE+A T SS SYERLE +GD +L LL + + + + Sbjct: 32 LDGVEEILKYKFKNRSLLEEAFTDSSFP-GKCFSYERLEHVGDSVLNLLFTKEHYFKYPN 90 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 G L+ + V E ++VA + F+R L ++ ++++ Sbjct: 91 LPPGALTRLRAANVDTEKLARVAVKHGFHRFLRHKKPLLEEQIRE-------FSQAILEY 143 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 G+ + + + + + + K ++ + Sbjct: 144 PLHSNGLVDVPKVLADIVESAIGAVFIDSNSSVDTVWKKRNLKVKFVDLWRESMA----- 198 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVLKREG 224 V V I +G K+ A AA + L G Sbjct: 199 -----VDVFIDDQLVGRGTYGLKKEIAHNRAAKDALDNIG 233 >gi|152965344|ref|YP_001361128.1| ribonuclease III [Kineococcus radiotolerans SRS30216] gi|151359861|gb|ABS02864.1| Ribonuclease III [Kineococcus radiotolerans SRS30216] Length = 224 Score = 92.7 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 3/193 (1%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LLE ALTH S ++ + ERLEFLGD +LGL+++ L+ F+ EG L+ Sbjct: 4 DAGLLELALTHRSYAYEQGGLPTNERLEFLGDSVLGLVVTHELYTRFEDVSEGRLAKLRA 63 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 ++V++ + +AR LDL + +R+ +SI AD +E++I A +L G++ A Sbjct: 64 AVVNSRALADIARGLDLGAHVRLGKGELGTGGRDKSSILADTMEAVIGAAFLSVGMDGAR 123 Query: 137 TFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 FV + S + + A G+ SGPDH FT + Sbjct: 124 EFVLRLTSPLMDSSERLGAGTDWKTALQELTASEGLGVPSYAITDSGPDHAKNFTADAVV 183 Query: 196 SGLAPAQGMDCSK 208 G G SK Sbjct: 184 GGTVLGHGEGRSK 196 >gi|284006739|emb|CBA71996.1| ribonuclease III [Arsenophonus nasoniae] Length = 204 Score = 92.7 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 6/190 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 ++ALTH S S + ERLEFLGD IL +I+ L++ F EG++S +LV T Sbjct: 2 KQALTHRSASSGH---NERLEFLGDSILSFVIANDLYHRFPKVDEGDMSRMRATLVRGNT 58 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV--DK 141 +++ARE DL +R+ K SI AD +E+LI +++LD I+ V Sbjct: 59 LAELAREFDLGECLRLGPGELKSGGFRRESILADTIEALIGSIFLDSDIQTTERIVLAWY 118 Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-LAP 200 + + G ++D KT LQE+ + P Y V G HD FT+ ++SG P Sbjct: 119 DTRLIEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVRVRGEAHDQEFTIHCQVSGIKEP 178 Query: 201 AQGMDCSKRA 210 +G+ S+R Sbjct: 179 VEGVGSSRRK 188 >gi|260907271|ref|ZP_05915593.1| ribonuclease III [Brevibacterium linens BL2] Length = 234 Score = 92.7 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 80/210 (38%), Gaps = 4/210 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M + L+K +G + ALTH S + + ERLEFLGD +LGL+ + Sbjct: 1 MDTDTTAELQKSLGIDI-DPETFRLALTHRSFAFEAGGIPTNERLEFLGDSVLGLVATES 59 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ EG L+ +++V+ + +AR + I + SI AD Sbjct: 60 LYYDNPDLAEGSLAKMRSAVVNTRALASIARRHGIGPHILLGKGEELTGGRDKDSILADT 119 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKV 177 VE+LI A ++ G E A FV + + + A A + Sbjct: 120 VEALIGATFVARGREEAFAFVHRLIDSMLSDAVNLGAGMDYKTTLQEAAADLDLGAVSYE 179 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGPDH FT + G S Sbjct: 180 IVSSGPDHAMVFTATALLGANGWGTGDGSS 209 >gi|111225163|ref|YP_715957.1| ribonuclease III [Frankia alni ACN14a] gi|111152695|emb|CAJ64436.1| Ribonuclease III (RNase III) [Frankia alni ACN14a] Length = 272 Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 6/202 (2%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL++ALTH S ++ + ERLEFLGD +LGL+++ LF EG+L+ + Sbjct: 23 DPELLDRALTHRSYAYEKGGLPTNERLEFLGDAVLGLVVTAALFLRHPDLPEGQLAKQRA 82 Query: 77 SLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S+V+ + VAR + ++ + SI AD +E++I A+YL G++ Sbjct: 83 SVVNMRALADVARGIGPDGLGPYLLLGRGEETTGGRDKASILADTLEAIIGAVYLSAGLD 142 Query: 134 VAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 A FV + + +G+ + A + P V +GPDH RFT Sbjct: 143 AASIFVHRLFDPLLDEAAGRGAGLDWKTSLQEQTALLALGPPEYVVEEAGPDHAKRFTAH 202 Query: 193 VEISGLAPAQGMDCSKRAAEQV 214 I+G +G SK+ AEQ Sbjct: 203 ARIAGEPLGEGEGGSKKEAEQR 224 >gi|238788224|ref|ZP_04632019.1| Ribonuclease 3 [Yersinia frederiksenii ATCC 33641] gi|238723811|gb|EEQ15456.1| Ribonuclease 3 [Yersinia frederiksenii ATCC 33641] Length = 204 Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 66/190 (34%), Positives = 95/190 (50%), Gaps = 6/190 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +ALTH S S + ERLEFLGD IL +I+ L+ F EG++S +LV T Sbjct: 2 LQALTHRSASS---KHNERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNT 58 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 +++ARE DL +R+ K SI AD VE+LI ++LD I + ++ Sbjct: 59 LAEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIHTIERLILDWY 118 Query: 144 KQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200 + R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 119 RSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEP 178 Query: 201 AQGMDCSKRA 210 G S+R Sbjct: 179 VIGTGSSRRK 188 >gi|194097974|ref|YP_002001022.1| ribonuclease III [Neisseria gonorrhoeae NCCP11945] gi|239998445|ref|ZP_04718369.1| ribonuclease III [Neisseria gonorrhoeae 35/02] gi|240080149|ref|ZP_04724692.1| ribonuclease III [Neisseria gonorrhoeae FA19] gi|240117386|ref|ZP_04731448.1| ribonuclease III [Neisseria gonorrhoeae PID1] gi|240122943|ref|ZP_04735899.1| ribonuclease III [Neisseria gonorrhoeae PID332] gi|240125195|ref|ZP_04738081.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679] gi|240127651|ref|ZP_04740312.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035] gi|238690180|sp|B4RJT7|RNC_NEIG2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|193933264|gb|ACF29088.1| ribonuclease III [Neisseria gonorrhoeae NCCP11945] Length = 239 Score = 92.3 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 12 TAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 69 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + +R + +D KT LQE A+ P+Y++ + G Sbjct: 129 SFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 188 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 189 NDSMFVISCDLGELGFVCRAKGTSR 213 >gi|170079136|ref|YP_001735774.1| ribonuclease III [Synechococcus sp. PCC 7002] gi|169886805|gb|ACB00519.1| ribonuclease III [Synechococcus sp. PCC 7002] Length = 258 Score = 92.3 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 66/196 (33%), Positives = 95/196 (48%), Gaps = 9/196 (4%) Query: 17 FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F LL +ALTH S ++ E ERLEFLGD +L ++ LL+ + +EGELS Sbjct: 7 FQRSPLLLQALTHRSFANEQPETIQDNERLEFLGDAVLKFIMGKLLYERYPDFQEGELSR 66 Query: 74 RFNSLVSAETC-SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 SL + ++ A+ L L +R+ K+ I ++ E+++ A +LD GI Sbjct: 67 LRASLENNRHQLAEFAQVLGLDQILRLGKGAEKEGARQNPEILSNTFEAVVGAYFLDAGI 126 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDA-----KTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 E A FV+ A + + D K +LQEWA A G P+YK SG DH Sbjct: 127 EAAIAFVETLVIPVADRLVQQPSDPLAQNFKGQLQEWALANHGEIPKYKTLNESGADHAK 186 Query: 188 RFTVVVEISGLAPAQG 203 FTV V + G +G Sbjct: 187 TFTVAVYLQGQEWGRG 202 >gi|319410059|emb|CBY90393.1| ribonuclease III [Neisseria meningitidis WUE 2594] Length = 310 Score = 92.3 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 83 AAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 139 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 140 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 199 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + +R + +D KT LQE A+ P+Y++ + G Sbjct: 200 SFDADFNTAEKVVRHLFAERVRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 259 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 260 NDSMFVISCDLGELGFVCRAKGTSR 284 >gi|237732553|ref|ZP_04563034.1| ribonuclease III [Citrobacter sp. 30_2] gi|226908092|gb|EEH94010.1| ribonuclease III [Citrobacter sp. 30_2] Length = 204 Score = 92.3 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 65/190 (34%), Positives = 94/190 (49%), Gaps = 6/190 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 ++ALTH S S + ERLEFLGD IL +I+ L++ F EG++S +LV T Sbjct: 2 QQALTHRSASS---KHNERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNT 58 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT--FVDK 141 +++ARE DL +R+ K SI AD VE+LI ++LD I+ Sbjct: 59 LAELAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEQLILNWY 118 Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200 + + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 119 QTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEP 178 Query: 201 AQGMDCSKRA 210 G S+R Sbjct: 179 VVGTGSSRRK 188 >gi|224141703|ref|XP_002324204.1| dicer-like protein [Populus trichocarpa] gi|222865638|gb|EEF02769.1| dicer-like protein [Populus trichocarpa] Length = 1492 Score = 92.3 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 102/237 (43%), Gaps = 18/237 (7%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLF 60 +LE ++GY F + +L++A+TH+SI Y+RLEFLGD +L LLI+ L+ Sbjct: 1118 KEDEIKSLESKLGYTFGVKFVLQEAMTHASIQEQGVTYCYQRLEFLGDSVLDLLITWHLY 1177 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-------------LRKDV 107 GEL+ ++ V+ + +QVA + +L + + S D Sbjct: 1178 QSHTDVDPGELTDLRSASVNNDNFAQVAVKQNLYTHLLHCSTLLQSQITEYVNSFHESDQ 1237 Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 + D++ES+ AL +D + G + + + + Sbjct: 1238 GTKAPKALGDLIESIAGALLIDTKFNLDGVWRIFKPLLSPIVTPEKLELPPLRELVELCD 1297 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 GV + K T ++ H + V++ +G + +++AA+ AA+ +LK+ Sbjct: 1298 SIGVFVKEKCTKKAEMVHAQLW---VQLDNELLSGEGYEKNRKAAKGKAASCLLKKL 1351 Score = 38.8 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 SL+ +A+T ++ S ERLE LGD +L +S LF + + EG+LS + V Sbjct: 927 SLILEAIT--TLRCCESFSMERLELLGDSVLKYAVSCHLFLKYPNKHEGQLSSWRSGAVC 984 Query: 81 AETCSQVARELDLASF 96 T ++ + + + Sbjct: 985 NSTLHKLGTDCKVQGY 1000 >gi|293406009|ref|ZP_06650001.1| rnc [Escherichia coli FVEC1412] gi|306814369|ref|ZP_07448531.1| ribonuclease III [Escherichia coli NC101] gi|291428217|gb|EFF01244.1| rnc [Escherichia coli FVEC1412] gi|305851763|gb|EFM52215.1| ribonuclease III [Escherichia coli NC101] gi|313648245|gb|EFS12689.1| ribonuclease III [Shigella flexneri 2a str. 2457T] gi|320176131|gb|EFW51198.1| Ribonuclease III [Shigella dysenteriae CDC 74-1112] gi|320662723|gb|EFX30062.1| ribonuclease III [Escherichia coli O55:H7 str. USDA 5905] gi|323156225|gb|EFZ42384.1| ribonuclease III [Escherichia coli EPECa14] gi|323173115|gb|EFZ58746.1| ribonuclease III [Escherichia coli LT-68] gi|323177303|gb|EFZ62891.1| ribonuclease III [Escherichia coli 1180] gi|326345056|gb|EGD68800.1| Ribonuclease III [Escherichia coli O157:H7 str. 1044] gi|332092616|gb|EGI97688.1| ribonuclease III [Shigella boydii 3594-74] gi|333000427|gb|EGK20009.1| ribonuclease III [Shigella flexneri VA-6] gi|333000857|gb|EGK20429.1| ribonuclease III [Shigella flexneri K-218] gi|333001660|gb|EGK21227.1| ribonuclease III [Shigella flexneri K-272] gi|333015936|gb|EGK35271.1| ribonuclease III [Shigella flexneri K-227] gi|333016828|gb|EGK36154.1| ribonuclease III [Shigella flexneri K-304] Length = 204 Score = 91.9 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 64/190 (33%), Positives = 94/190 (49%), Gaps = 6/190 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 ++ALTH S S + ERLEFLGD IL +I+ L++ F EG++S +LV T Sbjct: 2 QQALTHRSASS---KHNERLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNT 58 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG--TFVDK 141 +++ARE +L +R+ K SI AD VE+LI ++LD I+ Sbjct: 59 LAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWY 118 Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200 + + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 119 QTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEP 178 Query: 201 AQGMDCSKRA 210 G S+R Sbjct: 179 VVGTGSSRRK 188 >gi|321458470|gb|EFX69538.1| hypothetical protein DAPPUDRAFT_329028 [Daphnia pulex] Length = 1597 Score = 91.9 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 82/251 (32%), Gaps = 32/251 (12%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFD 64 + TLE+ + + F NR L +A +H+S H+ Y+RLEFLGD + LI+ L++ Sbjct: 1348 FETLERSLNFRFGNRFYLLQAFSHASYHHNRMTSCYQRLEFLGDAVFDYLITKYLYDCRL 1407 Query: 65 SA-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 G LS ++LV+ T + +A +++ Q + Sbjct: 1408 FQLTPGALSDMRSALVNNVTFAVLAVRNGFHRYLKHLVPDVHQAIDRFVQQQEMCDHATP 1467 Query: 124 AALYLDGGIEVAGTFVDKYW----------------KQRALKSGKFRRDAKTELQEWAHA 167 +L G + + +R QE Sbjct: 1468 DEFFLIGTHDDPMAEAVEVPKVLGDIFESLVGAVFLDSDMSLDAVWRVFYPLIRQEIEAC 1527 Query: 168 KFGVTPEYKVTFRSGPDHDPRFT-------------VVVEISGLAPAQGMDCSKRAAEQV 214 V T +F V V +G +G+ + R A+ Sbjct: 1528 TRVVPKSPIRTIYEKYPGKVQFKTLENLPDGRICIAVEVLNNGRLY-KGVGKNSRIAKNT 1586 Query: 215 AAAEVLKREGI 225 AA L + GI Sbjct: 1587 AAKYALSQLGI 1597 >gi|238896018|ref|YP_002920754.1| ribonuclease III [Klebsiella pneumoniae NTUH-K2044] gi|238548336|dbj|BAH64687.1| ribonuclease III [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 204 Score = 91.9 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 6/190 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 ++ALTH S S + ERLEFLGD IL +I+ L++ F EG++S +LV T Sbjct: 2 QQALTHRSASS---KHNERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNT 58 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV--DK 141 +++ARE +L +R+ K SI AD VE+LI ++LD I+ + Sbjct: 59 LAEIAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQNVERLILSWY 118 Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200 + + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 119 QTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEP 178 Query: 201 AQGMDCSKRA 210 G S+R Sbjct: 179 VVGTGSSRRK 188 >gi|304388061|ref|ZP_07370190.1| ribonuclease III [Neisseria meningitidis ATCC 13091] gi|304337918|gb|EFM04058.1| ribonuclease III [Neisseria meningitidis ATCC 13091] Length = 267 Score = 91.9 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 40 AAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 96 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 97 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 156 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + R + +D KT LQE A+ P+Y++ + G Sbjct: 157 SFDADFNTAEKVVRHLFADRVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGYA 216 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 217 NDSMFVISCDLGELGFVCRAKGTSR 241 >gi|293394829|ref|ZP_06639119.1| ribonuclease III [Serratia odorifera DSM 4582] gi|291422580|gb|EFE95819.1| ribonuclease III [Serratia odorifera DSM 4582] Length = 204 Score = 91.9 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 66/190 (34%), Positives = 97/190 (51%), Gaps = 6/190 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +ALTH S S + ERLEFLGD IL +I+ L++ F EG++S +LV T Sbjct: 2 LQALTHRSASS---KHNERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNT 58 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 +++ARE DL +R+ K SI AD VE+LI ++LD I+ + ++ Sbjct: 59 LAEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVERLILDWY 118 Query: 144 KQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200 + R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 119 RSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEP 178 Query: 201 AQGMDCSKRA 210 G S+R Sbjct: 179 VVGTGSSRRK 188 >gi|224109196|ref|XP_002315119.1| dicer-like protein [Populus trichocarpa] gi|222864159|gb|EEF01290.1| dicer-like protein [Populus trichocarpa] Length = 1408 Score = 91.9 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 93/244 (38%), Gaps = 25/244 (10%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + LE + Y+F + SLL +ALTH S Y+RLEFLGD +L LI+ L+ Sbjct: 1153 VNVRYLESLLNYSFRDPSLLVEALTHGSYMLPEIPSCYQRLEFLGDAVLDYLITMHLYKE 1212 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-------------- 108 + G L+ ++ V+ + +Q A + DL I +S Sbjct: 1213 YPGMSPGLLTDLRSASVNNDCYAQSAVKGDLHKHILHTSQDLHKHIVETAEIFQKSSLGS 1272 Query: 109 -------SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 + + DV+ESL A+ +D G F L + R Sbjct: 1273 TFGWESETSFPKVLGDVIESLAGAILVDSGYNKEIVFQSIRPLLEPLITPATVRLHPARE 1332 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220 K + V +G + T+VV +G+ K+ A+++A+ EVL Sbjct: 1333 LSELCQKQHFDYKKSVVSYNGR--NASITIVVGANGVTFKHTATAADKKTAKKLASKEVL 1390 Query: 221 KREG 224 K Sbjct: 1391 KSLK 1394 >gi|71042598|pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii From Mycobacterium Tuberculosis Length = 242 Score = 91.9 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 8/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M R L +G + LL ALTH S ++ + ERLEFLGD +LGL I+ Sbjct: 3 MIRSR-QPLLDALGVDLPD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDA 60 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQ 115 LF+ EG+L+ S+V+ + + VAR L L + + + +SI Sbjct: 61 LFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSIL 120 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPE 174 AD +ESL+ A+YL G+E A + + + + + A G+ Sbjct: 121 ADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAP 180 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + +GPDHD FT VV + G+ S Sbjct: 181 SYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRS 213 >gi|15610062|ref|NP_217441.1| ribonuclease III [Mycobacterium tuberculosis H37Rv] gi|15842471|ref|NP_337508.1| ribonuclease III [Mycobacterium tuberculosis CDC1551] gi|31794102|ref|NP_856595.1| ribonuclease III [Mycobacterium bovis AF2122/97] gi|121638807|ref|YP_979031.1| ribonuclease III [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662771|ref|YP_001284294.1| ribonuclease III [Mycobacterium tuberculosis H37Ra] gi|148824115|ref|YP_001288869.1| ribonuclease III [Mycobacterium tuberculosis F11] gi|167969555|ref|ZP_02551832.1| ribonuclease III [Mycobacterium tuberculosis H37Ra] gi|215404901|ref|ZP_03417082.1| ribonuclease III [Mycobacterium tuberculosis 02_1987] gi|215412768|ref|ZP_03421480.1| ribonuclease III [Mycobacterium tuberculosis 94_M4241A] gi|215428370|ref|ZP_03426289.1| ribonuclease III [Mycobacterium tuberculosis T92] gi|215431873|ref|ZP_03429792.1| ribonuclease III [Mycobacterium tuberculosis EAS054] gi|215447189|ref|ZP_03433941.1| ribonuclease III [Mycobacterium tuberculosis T85] gi|218754678|ref|ZP_03533474.1| ribonuclease III [Mycobacterium tuberculosis GM 1503] gi|224991299|ref|YP_002645988.1| ribonuclease III [Mycobacterium bovis BCG str. Tokyo 172] gi|253797986|ref|YP_003030987.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 1435] gi|254365562|ref|ZP_04981607.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis str. Haarlem] gi|254551999|ref|ZP_05142446.1| ribonuclease III [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187945|ref|ZP_05765419.1| ribonuclease III [Mycobacterium tuberculosis CPHL_A] gi|260202061|ref|ZP_05769552.1| ribonuclease III [Mycobacterium tuberculosis T46] gi|260206245|ref|ZP_05773736.1| ribonuclease III [Mycobacterium tuberculosis K85] gi|289444482|ref|ZP_06434226.1| ribonuclease III [Mycobacterium tuberculosis T46] gi|289448592|ref|ZP_06438336.1| ribonuclease III rnc [Mycobacterium tuberculosis CPHL_A] gi|289553284|ref|ZP_06442494.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 605] gi|289575632|ref|ZP_06455859.1| ribonuclease III rnc [Mycobacterium tuberculosis K85] gi|289746725|ref|ZP_06506103.1| ribonuclease III [Mycobacterium tuberculosis 02_1987] gi|289751594|ref|ZP_06510972.1| ribonuclease III rnc [Mycobacterium tuberculosis T92] gi|289755039|ref|ZP_06514417.1| ribonuclease III [Mycobacterium tuberculosis EAS054] gi|289759048|ref|ZP_06518426.1| ribonuclease III [Mycobacterium tuberculosis T85] gi|289763102|ref|ZP_06522480.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis GM 1503] gi|297635545|ref|ZP_06953325.1| ribonuclease III [Mycobacterium tuberculosis KZN 4207] gi|297732544|ref|ZP_06961662.1| ribonuclease III [Mycobacterium tuberculosis KZN R506] gi|298526395|ref|ZP_07013804.1| ribonuclease III [Mycobacterium tuberculosis 94_M4241A] gi|306777216|ref|ZP_07415553.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu001] gi|306781126|ref|ZP_07419463.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu002] gi|306785762|ref|ZP_07424084.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu003] gi|306789802|ref|ZP_07428124.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu004] gi|306794615|ref|ZP_07432917.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu005] gi|306798860|ref|ZP_07437162.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu006] gi|306804705|ref|ZP_07441373.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu008] gi|306808897|ref|ZP_07445565.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu007] gi|306968996|ref|ZP_07481657.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu009] gi|306973333|ref|ZP_07485994.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu010] gi|307081039|ref|ZP_07490209.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu011] gi|307085639|ref|ZP_07494752.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu012] gi|313659876|ref|ZP_07816756.1| ribonuclease III [Mycobacterium tuberculosis KZN V2475] gi|54039242|sp|P66667|RNC_MYCBO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|54041614|sp|P66666|RNC_MYCTU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|1405961|emb|CAA98974.1| PROBABLE RIBONUCLEASE III RNC (RNASE III) [Mycobacterium tuberculosis H37Rv] gi|13882776|gb|AAK47322.1| ribonuclease III [Mycobacterium tuberculosis CDC1551] gi|31619697|emb|CAD96637.1| PROBABLE RIBONUCLEASE III RNC (RNASE III) [Mycobacterium bovis AF2122/97] gi|121494455|emb|CAL72936.1| Probable ribonuclease III rnc (rnase III) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151075|gb|EBA43120.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis str. Haarlem] gi|148506923|gb|ABQ74732.1| ribonuclease III [Mycobacterium tuberculosis H37Ra] gi|148722642|gb|ABR07267.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis F11] gi|224774414|dbj|BAH27220.1| ribonuclease III [Mycobacterium bovis BCG str. Tokyo 172] gi|253319489|gb|ACT24092.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 1435] gi|289417401|gb|EFD14641.1| ribonuclease III [Mycobacterium tuberculosis T46] gi|289421550|gb|EFD18751.1| ribonuclease III rnc [Mycobacterium tuberculosis CPHL_A] gi|289437916|gb|EFD20409.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 605] gi|289540063|gb|EFD44641.1| ribonuclease III rnc [Mycobacterium tuberculosis K85] gi|289687253|gb|EFD54741.1| ribonuclease III [Mycobacterium tuberculosis 02_1987] gi|289692181|gb|EFD59610.1| ribonuclease III rnc [Mycobacterium tuberculosis T92] gi|289695626|gb|EFD63055.1| ribonuclease III [Mycobacterium tuberculosis EAS054] gi|289710608|gb|EFD74624.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis GM 1503] gi|289714612|gb|EFD78624.1| ribonuclease III [Mycobacterium tuberculosis T85] gi|298496189|gb|EFI31483.1| ribonuclease III [Mycobacterium tuberculosis 94_M4241A] gi|308214363|gb|EFO73762.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu001] gi|308326021|gb|EFP14872.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu002] gi|308329542|gb|EFP18393.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu003] gi|308333690|gb|EFP22541.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu004] gi|308337033|gb|EFP25884.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu005] gi|308340847|gb|EFP29698.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu006] gi|308344741|gb|EFP33592.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu007] gi|308348661|gb|EFP37512.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu008] gi|308353417|gb|EFP42268.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu009] gi|308357236|gb|EFP46087.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu010] gi|308361245|gb|EFP50096.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu011] gi|308364828|gb|EFP53679.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu012] gi|323718456|gb|EGB27628.1| ribonuclease III rnc [Mycobacterium tuberculosis CDC1551A] gi|326904540|gb|EGE51473.1| ribonuclease III rnc [Mycobacterium tuberculosis W-148] gi|328457760|gb|AEB03183.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 4207] Length = 240 Score = 91.9 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 8/213 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M R L +G + LL ALTH S ++ + ERLEFLGD +LGL I+ Sbjct: 1 MIRSR-QPLLDALGVDLPD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDA 58 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQ 115 LF+ EG+L+ S+V+ + + VAR L L + + + +SI Sbjct: 59 LFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSIL 118 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPE 174 AD +ESL+ A+YL G+E A + + + + + A G+ Sbjct: 119 ADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAP 178 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + +GPDHD FT VV + G+ S Sbjct: 179 SYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRS 211 >gi|254526942|ref|ZP_05138994.1| ribonuclease III [Prochlorococcus marinus str. MIT 9202] gi|221538366|gb|EEE40819.1| ribonuclease III [Prochlorococcus marinus str. MIT 9202] Length = 249 Score = 91.9 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 96/227 (42%), Gaps = 10/227 (4%) Query: 3 ALRYSTLEKRIGYAFANRSLLE---KALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 ++ + I + S+++ +A HSS +YE+LEF GD +L L S + Sbjct: 21 NIKSKRFSEII--RTQDISVIQDFNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASNFI 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + GE S +VS E +++ E+D+ I D S T I Sbjct: 77 EKKYPHMSVGERSELRAQIVSDEWLTKLGGEIDIEKLIIKGPKALGDENSKNTIIGESTE 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKV 177 + A I+ ++D W++ + ++ +KT LQEW +K P YK+ Sbjct: 137 ALIGAVYKCFNSIQEVNLWLDDIWEKDSEIFLKAPYKFKSKTVLQEWCQSKGFDLPVYKI 196 Query: 178 TFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 S + DP RF+ + I GL + S + AE AA ++++ Sbjct: 197 IEFSKKNGDPKRFSCDIYIEGLKESSAFGKSHKQAETNAARVLIEKL 243 >gi|124026759|ref|YP_001015874.1| putative ribonuclease III [Prochlorococcus marinus str. NATL1A] gi|123961827|gb|ABM76610.1| putative ribonuclease III [Prochlorococcus marinus str. NATL1A] Length = 247 Score = 91.9 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 5/209 (2%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 N + ++LTHSS + +YE LEFLGD +L L+ S + N + + GE S Sbjct: 32 KIKNILYINESLTHSSANSEI--NYENLEFLGDAVLRLIASDFIKNKYPYMQVGERSELR 89 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 + LVS + +V +++++ + + + + +D + T + A +E Sbjct: 90 SHLVSDQWLEEVGKKIEIKNVLVIGNKALRDKSASATIQAEATEALIGALYESLTVLEPI 149 Query: 136 GTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVV 192 ++ +W++++ + +++ K+ LQE +K P YK T +P RF Sbjct: 150 KDWLIPFWEEKSKEVLADPHKKNYKSALQELTQSKGLSIPIYKTTEIDKKHDNPERFFCN 209 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 V + + A+G S + AE+ AA++ LK Sbjct: 210 VYVKNRSIAEGSGKSMKQAEKNAASKALK 238 >gi|255547506|ref|XP_002514810.1| ATP binding protein, putative [Ricinus communis] gi|223545861|gb|EEF47364.1| ATP binding protein, putative [Ricinus communis] Length = 1388 Score = 91.5 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 89/254 (35%), Gaps = 36/254 (14%) Query: 1 MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLIS 56 M+ + LE + Y+F + LL +ALTH S Y+RLEFLGD +L LI+ Sbjct: 1135 MNPEKYVNICHLESLLKYSFRDPCLLVEALTHGSYMLPEIPRCYQRLEFLGDSVLDYLIT 1194 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 L+ + G L+ ++ V+ + +Q A L +I +S + Sbjct: 1195 VHLYEKYPGMSPGLLTDMRSASVNNDCYAQSAVREGLHKYILHASQKLHKDIVSTVANCK 1254 Query: 117 DVVESLI----------------------AALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154 + A G + + + + R Sbjct: 1255 EFSSESTFGWESEISFPKVLGDVIESLAGAIFVDSGYNKEVVFNSIRPLLEPLITPETIR 1314 Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRA 210 EL E + + V+ +G TV VE +G+ S ++ Sbjct: 1315 LHPTRELTELCQKQHFDRRKPVVSRNNGMSC---VTVEVEANGVVF---KHTSAAAERKT 1368 Query: 211 AEQVAAAEVLKREG 224 A+++A+ EVL+ Sbjct: 1369 AKRLASKEVLRALK 1382 >gi|256379958|ref|YP_003103618.1| ribonuclease III [Actinosynnema mirum DSM 43827] gi|255924261|gb|ACU39772.1| ribonuclease III [Actinosynnema mirum DSM 43827] Length = 267 Score = 91.5 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 7/211 (3%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60 ++ + L + +G + LL ALTH S ++ ERLEFLGD +LGL+++ L+ Sbjct: 10 SVDRTPLLEALGV-PLDAELLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLY 68 Query: 61 NHFDSAKEGELSVRFNSLVSAET---CSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 EG+L+ S+V+ ++ L + + SI AD Sbjct: 69 RAHPDRPEGQLAKLRASVVNMHALAGVARGLGADGLGGHLLLGRGEELTGGRDKASILAD 128 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYK 176 +E++I A+YL GI+ A V + ++ + A G+ Sbjct: 129 GLEAVIGAVYLQFGIDTARQLVHHLFDPLLAEAPLRGAGLDWKTSLQELTASSGLGVPEY 188 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 GPDH FT V + G G + Sbjct: 189 RVDDQGPDHRKEFTATVYVGGKPHGSGDGRT 219 >gi|207109381|ref|ZP_03243543.1| ribonuclease III [Helicobacter pylori HPKX_438_CA4C1] Length = 197 Score = 91.5 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 99/180 (55%), Gaps = 4/180 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y+TLEK +GY+F ++ LLE+ALTH S + ERLEFLGD +LGL+I LL++ F Sbjct: 20 YTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 77 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EG+LS S+VSA+ +++A+ + L ++RVSS SI + E+L+A Sbjct: 78 YDEGKLSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEEISKGREKPSILSSAFEALMAG 137 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL+ G+ + + + D KT LQE A+F V P Y++ GP Sbjct: 138 VYLEAGLAKVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQAQFCVIPTYQLLKEKGP 197 >gi|87240866|gb|ABD32724.1| Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] Length = 1939 Score = 91.1 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 78/229 (34%), Gaps = 18/229 (7%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ + LE + F ++ LL +++TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1598 SVDFDALEGALNIKFKDKGLLIESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFS 1657 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD----- 117 + G L+ + V+ E ++V + +L +R S + D Sbjct: 1658 YTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKDFVKEVQDELSKP 1717 Query: 118 --------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 ++ + I A K + + Sbjct: 1718 GFNSFGLGDCKAPKVLGDILESIAGAIFLDSGRNTAVVWKVFQPLLHPMVTPETLPMHPV 1777 Query: 170 GVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGMDCSKRAAEQ 213 E G ++ TV V I G+ + K+ A++ Sbjct: 1778 RELQERCQQQAEGLEYRASRAGNLATVEVFIDGVQVGAAQNPQKKMAQK 1826 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 7/94 (7%) Query: 8 TLEKRIGYAFANRSL-----LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 L+ I Y + + +ALT +S ++ YER E LGD L ++S LF Sbjct: 1379 QLKNMINYPVQASKVSSQLKILEALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLK 1436 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 EG+L+ +VS + A L S+ Sbjct: 1437 HPQKHEGQLTRMRQQMVSNMVLYRYALSKGLQSY 1470 Score = 42.6 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 8/74 (10%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMDCSKRA 210 + L + + P Y+ GP H RFT V ++ + M S + Sbjct: 1862 RQTLNDICLRRNWPMPFYRCVSEGGPAHAKRFTFAVRVNTTDKGWTDECVGEAM-PSVKK 1920 Query: 211 AEQVAAAEVLKREG 224 A+ AA +L+ Sbjct: 1921 AKDSAAVLLLELIN 1934 >gi|255550219|ref|XP_002516160.1| Ribonuclease III, putative [Ricinus communis] gi|223544646|gb|EEF46162.1| Ribonuclease III, putative [Ricinus communis] Length = 1660 Score = 91.1 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 93/244 (38%), Gaps = 27/244 (11%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLF 60 +E ++GY F+ + LL++A+TH+S+ Y+RLEFLGD +L LLI+ L+ Sbjct: 1258 KEDEIKGIESKLGYTFSVKFLLQEAMTHASMQEQGIGYCYQRLEFLGDSVLDLLITWHLY 1317 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111 + S GEL+ ++ VS E +QV DL ++ S L Sbjct: 1318 QNHTSMDPGELTDLRSACVSNENFAQVVVRRDLYKHLQHCSTLLLSQIKEYLESFHESDE 1377 Query: 112 ---------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 D++ES+ A+ +D + + + L + + Sbjct: 1378 VAKATGPKGPKALGDLLESIAGAMLIDAKLNLDEVWRIFMPLLSPLATPQNLELPPL--- 1434 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEV 219 +++ + + L G D S++AA+ AA + Sbjct: 1435 --RELMQLCNSLGYFIKEKCINNNDIVHAELRLQLNDVLLVGNGCDRSRKAAKGKAATHL 1492 Query: 220 LKRE 223 LK+ Sbjct: 1493 LKKL 1496 Score = 41.8 bits (96), Expect = 0.067, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 53/181 (29%), Gaps = 19/181 (10%) Query: 16 AFANRSLLE-KALTHS-SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F SLL +A+T S S ERLE LGD +L +S LF + + EG+LS Sbjct: 1062 NFHIPSLLILEAITTPRSCEKV---SMERLELLGDSVLKYSVSCDLFLRYPTKHEGQLSA 1118 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL------- 126 + V T +L + ++ + + + + Sbjct: 1119 QRTRAVCNST----LHQLGIGCKLQGYIRDSAFIPRYWVAPGQQPAFYVSCTCGVDTLEV 1174 Query: 127 ---YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + K K D + + G+ V G Sbjct: 1175 PLDAKFQTEDPKVQIAICCSKGHRWMCSKTISDCVEAVIGAYYVSGGLMAALHVMQWLGM 1234 Query: 184 D 184 D Sbjct: 1235 D 1235 >gi|159126799|gb|EDP51915.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus A1163] Length = 1546 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 85/235 (36%), Gaps = 23/235 (9%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+ +GY F LL A+TH S+ ++ Y+RLEFLGD +L ++ LF F Sbjct: 1277 VEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPD 1336 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT------------S 113 LS ++VS + ++ +L I S+ + + + Sbjct: 1337 RDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQGA 1396 Query: 114 IQADVVESLIAALYLDGGIEV-----AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 D+VE+ + A+++D + K + + F T Sbjct: 1397 CLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSIYDTFANKHPTTFLHNKLTN 1456 Query: 169 FGVTPEYKVTFRSGP--DHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y + P D P V + G ++ S R A+ A+ + L Sbjct: 1457 EYGCTNYCLKAGELPTIDGAPATVLAAVIVHGNVISEARSSSSRYAKIKASEKAL 1511 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 12/98 (12%) Query: 20 RSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +A T H ++YERLEFLGD L + S LF+ + Sbjct: 1078 PDFALEAFTKDSDNTEEHRGQQIHFQRGMGKNYERLEFLGDCFLKMATSIALFSQNPNDD 1137 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 E + V L+ + A + + +IR R Sbjct: 1138 EFDYHVNRMCLICNKNLFNTAIKKQIYRYIRSRGFSRH 1175 >gi|212550552|ref|YP_002308869.1| ribonuclease III [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|229564347|sp|B6YQI6|RNC_AZOPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|212548790|dbj|BAG83458.1| ribonuclease III [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 261 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 12/229 (5%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 Y L + +G+ N S+ EKAL H S S + + ERLEFLGD I +I+ Sbjct: 16 KKESYFALYRMLGFPPKNFSIYEKALLHKSSSKRDENGCYQNNERLEFLGDAIFNAIIAV 75 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +L+ F + EG L+ + +V +T ++A +L + I + I + Sbjct: 76 ILYKKFPTNDEGFLTNTRSKIVKRDTLDKIAYQLGINHLI-----MISAKVKNHKHIMGN 130 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPE 174 +E+ I A+YLD G FV+K + + K++L EW + Sbjct: 131 TLEAFIGAIYLDKGYLKTKEFVEKRIINPYIDIDTLVREEVNFKSKLFEWCQKHKILLQF 190 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + + + F + ++ G+ SKR ++Q A+ ++ Sbjct: 191 QTLENFTDNNRNVVFQIQALLNNHIAGIGIGYSKRESQQHASQMTWRKI 239 >gi|254822109|ref|ZP_05227110.1| ribonuclease III [Mycobacterium intracellulare ATCC 13950] Length = 235 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 67/208 (32%), Positives = 100/208 (48%), Gaps = 9/208 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 L +G + LL ALTH S ++ + + ERLEFLGD +LGL I+ L++ Sbjct: 5 QALLDALGVELPD-ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDELYHRHP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---KDVCSFMTSIQADVVES 121 EG+L+ S+V+ + + V R+L R + +SI AD +ES Sbjct: 64 DRSEGDLAKLRASVVNTQALADVGRKLCEGGLGVHLLLGRGEANTGGADKSSILADGMES 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179 L+ A+YL+ GI+VA + + + + D KT LQE A+ P Y VT Sbjct: 124 LLGAIYLEHGIDVAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARSMGAPSYVVTS 183 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +GPDHD FT VV ++ G+ S Sbjct: 184 -TGPDHDKEFTAVVVVADTEYGSGVGRS 210 >gi|147833654|emb|CAN77284.1| hypothetical protein VITISV_043738 [Vitis vinifera] Length = 1296 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 92/243 (37%), Gaps = 25/243 (10%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + S LE + Y+F + SLL ++LTH S Y+RLEFLGD +L L++ L++ Sbjct: 1049 VNVSYLESILNYSFRDPSLLVESLTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHK 1108 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-------------- 108 + G L+ ++ V+ + +Q A + L I SS Sbjct: 1109 YPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGBFDKLPXES 1168 Query: 109 -------SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 S + DV+ESL A+ +D F L + + + Sbjct: 1169 TFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARE 1228 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K + V ++G T+ VE +G KR A ++A+ EVLK Sbjct: 1229 LXELCQKEHYXIKRVVVSQNGKA---SVTIEVEANGAKHKHTSTSDKRTAXKLASKEVLK 1285 Query: 222 REG 224 Sbjct: 1286 SLK 1288 >gi|228472309|ref|ZP_04057075.1| ribonuclease 3 [Capnocytophaga gingivalis ATCC 33624] gi|228276512|gb|EEK15236.1| ribonuclease 3 [Capnocytophaga gingivalis ATCC 33624] Length = 232 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 78/213 (36%), Gaps = 5/213 (2%) Query: 10 EKRIGYAFANRSLLEKALTH---SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 E+ +G+ E+A T + S SYERLEFLGD ILG +I+ +F Sbjct: 2 EQLLGFPPKEIHYYEEAFTLGTVRTDSAQPHISYERLEFLGDAILGAVIAHFVFLQAPDK 61 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+L+ +V E +Q+ +L L ++ + + ++ +V ++ Sbjct: 62 NEGDLTKMRTRMVRRENLNQIGEDLRLREYLL-ADKHTLLSGNIAGNLLEALVGAIYLDR 120 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 E + K K+ + EWA + Sbjct: 121 GYSKATEFIHRILIDTNLSMRDLENKVI-SYKSLMVEWAQKYHKTIAFVSEEDPTYKGRT 179 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 F V I+ A+ D SK+ AE+ AA Sbjct: 180 KYFQAKVMINDKVFAKAHDTSKKKAEERAAKRA 212 >gi|240013570|ref|ZP_04720483.1| ribonuclease III [Neisseria gonorrhoeae DGI18] gi|240112363|ref|ZP_04726853.1| ribonuclease III [Neisseria gonorrhoeae MS11] gi|240120639|ref|ZP_04733601.1| ribonuclease III [Neisseria gonorrhoeae PID24-1] gi|260441082|ref|ZP_05794898.1| ribonuclease III [Neisseria gonorrhoeae DGI2] Length = 239 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 12 TAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 69 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + +R + +D KT LQE A+ P+Y++ + G Sbjct: 129 SFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 188 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 D F + ++ L + S+ Sbjct: 189 DDSMFVISCDLGELGFVCRAKGTSR 213 >gi|330983107|gb|EGH81210.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 132 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 53/132 (40%), Positives = 75/132 (56%), Gaps = 3/132 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL + LF Sbjct: 1 MSVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+ Sbjct: 58 RSPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117 Query: 122 LIAALYLDGGIE 133 LI A+YLD G+E Sbjct: 118 LIGAIYLDAGME 129 >gi|316974223|gb|EFV57735.1| putative ribosomal protein S7e [Trichinella spiralis] Length = 2029 Score = 90.8 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 78/244 (31%), Gaps = 42/244 (17%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFN 61 ++ E +IGY F N++ L +ALTHSS + +SYERLEFLGD IL LIS L++ Sbjct: 1766 DLNSFEAKIGYRFTNKAYLIQALTHSSYNEVETPVTDSYERLEFLGDAILDYLISRHLYS 1825 Query: 62 HFDSAKEGELSVRFNSLVSAE--------------------------TCSQVARELDLAS 95 G LS +LV+ ++ Sbjct: 1826 SKRIRSPGLLSDLRAALVNNYFLYFNAELLSVNERFVLAMRGLKESVNFHNELYMMEEEQ 1885 Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK----------Q 145 + D+ ES+ A++LD +A + Y Sbjct: 1886 DDDEKETSEFAEHVEVPKPLGDIFESVAGAIFLDSHCSLATVWQVYYNMIAEEIGKQRSD 1945 Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + + ++ + + G V V ++G G Sbjct: 1946 FTSFNKCLCHPPISPVRHLLELEPERVQFNILDREEGNSG---VHVQVVVTGKGSFIGSG 2002 Query: 206 CSKR 209 S R Sbjct: 2003 KSYR 2006 >gi|240016009|ref|ZP_04722549.1| ribonuclease III [Neisseria gonorrhoeae FA6140] gi|240115103|ref|ZP_04729165.1| ribonuclease III [Neisseria gonorrhoeae PID18] Length = 239 Score = 90.8 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 12 TAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 69 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAAV 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + +R + +D KT LQE A+ P+Y++ + G Sbjct: 129 SFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 188 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 189 NDSMFVISCDLGELGFVCRAKGTSR 213 >gi|89889945|ref|ZP_01201456.1| ribonuclease III (Rnase III), double-stranded RNA binding motif [Flavobacteria bacterium BBFL7] gi|89518218|gb|EAS20874.1| ribonuclease III (Rnase III), double-stranded RNA binding motif [Flavobacteria bacterium BBFL7] Length = 246 Score = 90.8 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 75/202 (37%), Gaps = 6/202 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 ++K G N + KA TH S+S SYERLEFLGD ILG +I+ ++N Sbjct: 23 IKKITGITPKNIDIYRKAFTHKSMSLKDADGNPISYERLEFLGDAILGSVIAEYIYNEVP 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG L+ + +VS E +++ + L F + R + ++ +V ++ Sbjct: 83 HGDEGYLTKMRSKIVSREHLNELGLDFGLIDFAKTQVPERNFGANVHGNLFEALVGAIYL 142 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 V + + GK ++ T Y +G + Sbjct: 143 DKGYKRTQNFISRRVIEPYVDIEKLEGKVISYKSILIEWCQKN--KKTFNYHTYEDTGVN 200 Query: 185 HDPRFTVVVEISGLAPAQGMDC 206 F+V + I A+ Sbjct: 201 EIRHFSVKLSIDDRVLAKARAT 222 >gi|15828634|ref|NP_325994.1| ribonuclease III (RNase III) [Mycoplasma pulmonis UAB CTIP] gi|14089576|emb|CAC13336.1| RIBONUCLEASE III (RNASE III) [Mycoplasma pulmonis] Length = 241 Score = 90.8 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 7/209 (3%) Query: 18 ANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSA--KEGELSVR 74 +++ +A TH++ + Y+ +SYE LEFLGD IL +S +F + +S G ++ Sbjct: 35 KEKNIFFQAFTHTTFHNLYKAKSYEMLEFLGDAILQKNVSEYIFKNTESNKINPGTATLI 94 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 + LV+ S +A+EL L F+ + + V + + +D+ ESL AA+Y+ G +V Sbjct: 95 RSKLVNKTCLSNLAKELKLDKFLLLPKGQEELVKNE--KVLSDLFESLCAAIYITKGNDV 152 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 F+ KY + + + V + + + Sbjct: 153 LEVFLQKYLYPKMQDLEYKTLKNAKGRFQEIFQATTKSAGKYVISFD--EEKKIYEAKLI 210 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 S G +K+ AEQ AA + LK+ Sbjct: 211 HSETIYGIGYGKNKKEAEQNAAEDALKKL 239 >gi|238750386|ref|ZP_04611887.1| Ribonuclease 3 [Yersinia rohdei ATCC 43380] gi|238711317|gb|EEQ03534.1| Ribonuclease 3 [Yersinia rohdei ATCC 43380] Length = 204 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 66/190 (34%), Positives = 95/190 (50%), Gaps = 6/190 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +ALTH S S + ERLEFLGD IL +I+ L+ F EG++S +LV T Sbjct: 2 LQALTHRSASS---KHNERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNT 58 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 +++ARE DL +R+ K SI AD VE+LI ++LD I + ++ Sbjct: 59 LAEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHTIERLILDWY 118 Query: 144 KQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200 + R + G ++D KT LQE+ + P Y V G HD FT+ ++SGL P Sbjct: 119 RSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEP 178 Query: 201 AQGMDCSKRA 210 G S+R Sbjct: 179 VVGAGSSRRK 188 >gi|115292171|emb|CAK32533.1| putative dicer-like protein [Mucor circinelloides] Length = 1529 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 53/98 (54%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + + +GY F N +L+ +ALTH+S+++S Y+RLEFLGD +L ++ LF Sbjct: 1248 RIDIKKVSRILGYEFQNEALIAEALTHASVTNSSVPCYQRLEFLGDAVLDFCVTNYLFEK 1307 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 + +A G L S V+ + S + +L L IR Sbjct: 1308 YHTAPPGTLHDLRKSSVNNDILSVLCIQLGLHVHIRHF 1345 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 9/107 (8%) Query: 1 MSALRYSTL----EKRIGY--AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54 M + L +K +G + +L +A T SS ++ Y+RLEFLGD +L + Sbjct: 1037 MMHIDAVLLMHDAKKALGLSGRMKDPYML-EAFTASSA--GLEKDYQRLEFLGDSVLKFI 1093 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 ST +F + E EL+ ++S + A +L L +I + Sbjct: 1094 TSTYVFVTLPISNEFELTESRMRMISNTALFKSAIQLRLYEYICSQN 1140 >gi|47225092|emb|CAF98719.1| unnamed protein product [Tetraodon nigroviridis] Length = 290 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 8/195 (4%) Query: 37 QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 +R+EFLGD I+ L+ + LF HF EG L++ +SLV+ T ++VA EL + F Sbjct: 57 SGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF 116 Query: 97 IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFR 154 + ++ V AD++ES IAALY+D +E TF++ + R + Sbjct: 117 AITNDKTKRPVVLRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDW 175 Query: 155 RDAKTELQEWA-----HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 D K++LQ+ K P YK GP H +TV V G G S + Sbjct: 176 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGDRIGCGKGPSIQ 235 Query: 210 AAEQVAAAEVLKREG 224 AE AA + L++ Sbjct: 236 QAEMGAAMDALEKYN 250 >gi|268594306|ref|ZP_06128473.1| ribonuclease III [Neisseria gonorrhoeae 35/02] gi|268596300|ref|ZP_06130467.1| ribonuclease III [Neisseria gonorrhoeae FA19] gi|268603082|ref|ZP_06137249.1| ribonuclease III [Neisseria gonorrhoeae PID1] gi|268681562|ref|ZP_06148424.1| ribonuclease III [Neisseria gonorrhoeae PID332] gi|268683791|ref|ZP_06150653.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679] gi|268686031|ref|ZP_06152893.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035] gi|268547695|gb|EEZ43113.1| ribonuclease III [Neisseria gonorrhoeae 35/02] gi|268550088|gb|EEZ45107.1| ribonuclease III [Neisseria gonorrhoeae FA19] gi|268587213|gb|EEZ51889.1| ribonuclease III [Neisseria gonorrhoeae PID1] gi|268621846|gb|EEZ54246.1| ribonuclease III [Neisseria gonorrhoeae PID332] gi|268624075|gb|EEZ56475.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679] gi|268626315|gb|EEZ58715.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035] gi|317163728|gb|ADV07269.1| ribonuclease III [Neisseria gonorrhoeae TCDC-NG08107] Length = 267 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 40 TAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 96 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 97 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 156 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + +R + +D KT LQE A+ P+Y++ + G Sbjct: 157 SFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 216 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 217 NDSMFVISCDLGELGFVCRAKGTSR 241 >gi|294660491|ref|NP_853275.2| ribonuclease 3 [Mycoplasma gallisepticum str. R(low)] gi|284812153|gb|AAP56843.2| Ribonuclease 3 (Ribonuclease III) [Mycoplasma gallisepticum str. R(low)] gi|284930761|gb|ADC30700.1| Ribonuclease 3 (Ribonuclease III) [Mycoplasma gallisepticum str. R(high)] gi|284931334|gb|ADC31272.1| Ribonuclease 3 (Ribonuclease III) [Mycoplasma gallisepticum str. F] Length = 655 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 6/223 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLL 59 A L K+ N L E+ALTH+S ++ + +Y+RLEFLGD I+ +++ L Sbjct: 428 EAKDLELLLKKFKVVTNNIGLYEEALTHNSYANEMHLKYNYQRLEFLGDAIINKIVAEYL 487 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 FNH DS++ R + S T + A +L+L ++IRV L+ + I D+ Sbjct: 488 FNHSDSSEGEMTKDRIKIIQSN-TLIKAATQLELINYIRVGEGLK--IAPLSPKILEDIF 544 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+ I A+YLD G E A + + G+ + + Sbjct: 545 EAFIGAMYLDQG-EYAVRKILNDTIIGYYQKGQLTENTDYKSIFQEIIHSTGLNMKIHYE 603 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 R+ TV + G+ +G D S AE AA E + + Sbjct: 604 RTYDRQKNLHTVSLYAGGIMYGEGKDSSTHKAEIKAAKEAISK 646 >gi|213405195|ref|XP_002173369.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces japonicus yFS275] gi|212001416|gb|EEB07076.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces japonicus yFS275] Length = 325 Score = 90.0 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 16/218 (7%) Query: 17 FANRSLLEKALTHSSISHSY-----------QESYERLEFLGDRILGLLISTLLFNHFDS 65 + L E+ TH S ++ + ERLEFLGD +L +++ +++ F + Sbjct: 102 IRQKKLEEQVFTHKSRANELFPHCLDARKLLSKHNERLEFLGDDVLEGIVTKIIYERFPN 161 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EGELS +LV + S+ A L +++ K T + ADV E+ + A Sbjct: 162 ANEGELSKLRATLVGNDMVSKFATLYGLHEKLQLGLCGEKSQLRKCTKVVADVFEAYLGA 221 Query: 126 LYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 LYLD I+ A +V + + R + AK ELQ G + + G Sbjct: 222 LYLDNQIDAAFEWVKQLIEPELVRFKMEPPINKLAKAELQRRIGKAGGKVEYRCIEKKMG 281 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + V I+G + G+ + + A AA + L Sbjct: 282 Q--REEYKVACIINGSEVSWGVGSNIKLAGTRAAMKAL 317 >gi|33862159|ref|NP_893720.1| putative ribonuclease III [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634377|emb|CAE20062.1| putative ribonuclease III [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 249 Score = 90.0 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 10/227 (4%) Query: 3 ALRYSTLEKRIGYAFANRSLLE---KALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + K I ++ +L +ALTHSS ++ +YE+LEF GD +L L S + Sbjct: 21 EINSKRFIKIINE--KDKLILHTFNEALTHSSANNIV--NYEKLEFFGDAVLRLSASDFI 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + S G S + +VS E +++ +++ + I D S T I Sbjct: 77 ERTYKSMSVGSRSELRSQIVSDEWLTELGKKIFIEKVIIKGPKAMGDENSKDTIIAETSE 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 + A I ++D +WK+ A + +AK+ LQEW ++ P YK+ Sbjct: 137 ALIGAIYKCFNSINEVNIWLDNFWKKDAELYLQAPHKYNAKSALQEWCQSQGFDLPIYKI 196 Query: 178 TFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 S DP RF+ + I+G A S + AE+ AA+ ++++ Sbjct: 197 YEVSKNHGDPKRFSCEIYINGSKKAFSFGHSHKKAEKNAASILIQKI 243 >gi|320580371|gb|EFW94594.1| ribonuclease III, putative [Pichia angusta DL-1] Length = 347 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 83/223 (37%), Gaps = 16/223 (7%) Query: 16 AFANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSA 66 + + + TH S + + + ERLEFLGD I+ L++ +LF + S Sbjct: 28 KIEDPVIEARVFTHRSAVSNTKHLSKKEILESNNERLEFLGDSIINNLVTQILFERYPSF 87 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS+ + L+S + + + + + V+ I +DV E+ + L Sbjct: 88 DEGELSILRSQLISNSSLGEFSEKYGFPEKLVVNFAKDAAFQKGKHKIYSDVFEAYVGGL 147 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK-------TELQEWAHAKFGVTPEYKVTF 179 Y+D T + + K + Q +A P +T Sbjct: 148 YVDSNYSNLDTIKKWLEQLITPRLSKLTERFNLKNLNNDAKAQLYALIGSAALPPRYITK 207 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 ++G D F V I +G + + A AA + L + Sbjct: 208 QTGNGFDVSFIVQCMIGDEIIGEGEGSNLKQAGLRAAEDALSK 250 >gi|312601347|gb|ADQ90602.1| Ribonuclease III [Mycoplasma hyopneumoniae 168] Length = 227 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 79/206 (38%), Gaps = 7/206 (3%) Query: 17 FANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 ++ + +ALTH S + + + YE LEFLGD ++ +S + EG + Sbjct: 18 PNSKQIYIQALTHKSYNFINPDKPHYEMLEFLGDSVINYAVS-KVIYDNFYKNEGNSTQI 76 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 + L S + + +++ L +++ + ++AD+ ES AA+ LD G E Sbjct: 77 RSLLTSTSSLANATKKVGLMNYVLLGRGA--SEIRENNKLKADIFESFCAAILLDQGFEK 134 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 F+ +Y + + + + + F + + D F V + Sbjct: 135 LNEFLSEYLYKDVNFDTEKQYKDPKSIFQEKIQTFSTSNKIHYLHTKLADG--TFRVDLI 192 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVL 220 G S + AE AA L Sbjct: 193 WEKKKYGIGYGRSIKEAEFAAATNAL 218 >gi|255536416|ref|YP_003096787.1| Ribonuclease III [Flavobacteriaceae bacterium 3519-10] gi|255342612|gb|ACU08725.1| Ribonuclease III [Flavobacteriaceae bacterium 3519-10] Length = 254 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 7/215 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + + K G + N +L +A + + S + ++YERLEFLGD +LG +IS LF+ + Sbjct: 27 NEISKITGCSVQNINLYREAFSLKTASPRTQVKNYERLEFLGDSVLGAIISCHLFSTYPH 86 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A EG L+ + +V+ + +++ EL L F++ S +++E+LI A Sbjct: 87 ANEGYLTQMKSKIVNRKNLNKLGDELGLTGFLQNESPSTLSEN-----TSGNLLEALIGA 141 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LYLD E V + + + + + ++ T + Sbjct: 142 LYLDVDYETCKKVVLERLLTPSEINKLENKIVSYKSLLLEWSQKKKEHIRYDTEQEMQAG 201 Query: 186 -DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + F V+ I+ A + SK+ AE+ AA Sbjct: 202 KNVVFRSVIWINDRKVANATETSKKKAEEKAAQRA 236 >gi|281427125|ref|NP_001163918.1| dicer 1, ribonuclease type III [Xenopus laevis] gi|261826170|gb|ACX94846.1| truncated double-stranded RNA-specific endoribonuclease type III [Xenopus laevis] Length = 1795 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1625 FENFEKKINYQFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1684 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ + +A + D + + Sbjct: 1685 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 1718 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE GD L I+T LF + + EG LS + Sbjct: 1270 NPGLILQALTLSNASDGF--NLERLEMPGDSFLKHAITTYLFCTYPDSHEGRLSYMRSKK 1327 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1328 VSNCNLYRLGKKKG 1341 >gi|108798917|ref|YP_639114.1| ribonuclease III [Mycobacterium sp. MCS] gi|119868032|ref|YP_937984.1| ribonuclease III [Mycobacterium sp. KMS] gi|126434517|ref|YP_001070208.1| ribonuclease III [Mycobacterium sp. JLS] gi|108769336|gb|ABG08058.1| RNAse III [Mycobacterium sp. MCS] gi|119694121|gb|ABL91194.1| RNAse III [Mycobacterium sp. KMS] gi|126234317|gb|ABN97717.1| RNAse III [Mycobacterium sp. JLS] Length = 234 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 65/213 (30%), Positives = 98/213 (46%), Gaps = 9/213 (4%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 L S L +G + LL ALTH S S+ + + ERLEFLGD +LGL I+ L Sbjct: 1 MTLDRSPLLAALGVTLPD-DLLTIALTHRSYSYEHGGLPTNERLEFLGDSVLGLTITEEL 59 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQA 116 F+ EG+L+ S+V+ + V R+L L S++ + + +SI A Sbjct: 60 FHRHPDRSEGDLAKLRASIVNTGALADVGRKLSDDGLGSYLLLGKGEESSGGADKSSILA 119 Query: 117 DVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 D VESL+ A+Y+ + + D K+ LQE A+ P Sbjct: 120 DGVESLLGAIYVQHGLTVTREVILRLFAGLLDTAPTLGAGLDWKSSLQELTAARGLGAPH 179 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 Y VT +GPDHD FT V ++ + +G+ + Sbjct: 180 YVVTS-TGPDHDKEFTATVLVTDIEYGRGVGRT 211 >gi|86143647|ref|ZP_01062023.1| putative ribonuclease III [Leeuwenhoekiella blandensis MED217] gi|85829690|gb|EAQ48152.1| putative ribonuclease III [Leeuwenhoekiella blandensis MED217] Length = 248 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61 + T++K IG+ N + E+A TH S++ +YERLEFLGD +LG +I+ LF+ Sbjct: 19 FVTVKKIIGFKPINITHYEEAFTHRSMALQDKKGNAFNYERLEFLGDAMLGAVIAAYLFD 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG L+ + +VS E +++ R+L L ++ + + ++ +V + Sbjct: 79 EVGKGDEGYLTKMRSKVVSREHLNELGRDLGLLGLVKSAIPKENFGANIHGNLFEALVGA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + + V + G+ ++ K ++ S Sbjct: 139 IYQDRGYRYARKFINKRVIDPYVDIEKLEGRVISYKSLLIEWCQKEKR--LFDFDTYEDS 196 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCS 207 G D F+V + I G A+ S Sbjct: 197 GQDVVRHFSVRLSIDGKQVAKARATS 222 >gi|156838880|ref|XP_001643138.1| hypothetical protein Kpol_455p11 [Vanderwaltozyma polyspora DSM 70294] gi|156113733|gb|EDO15280.1| hypothetical protein Kpol_455p11 [Vanderwaltozyma polyspora DSM 70294] Length = 558 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 82/219 (37%), Gaps = 15/219 (6%) Query: 19 NRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 + +L A H S + S ERLEFLGD LG L+S +++ F SA EG Sbjct: 113 DENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEG 172 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT-SIQADVVESLIAALYL 128 LS S+V+ + +L+ ++ + V AD VE+ I AL + Sbjct: 173 MLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPTRVVKDKMSKRYADCVEAYIGALVI 232 Query: 129 DGGI----EVAGTFVDKYWKQRALKSGKFRRDA-KTELQEWAHAKFGVTPEYKVTFRSGP 183 D ++ + K+ A S ++ + + Sbjct: 233 DRFGTEFLDIKEWLEELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKL 292 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V V+I + + S R AE AA +VL+ Sbjct: 293 TEMPPFRVEVKIGDILLDEAEGNSIREAEHRAAMKVLEN 331 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Query: 189 FTVVVEISG--LAPAQGMDCSKRAAEQVAAAEVLK 221 FT I G + A G SK+ A+Q AA+ L+ Sbjct: 510 FTANCIIKGSGIFLASGRGRSKKIAQQNAASAALR 544 >gi|146324173|ref|XP_753471.2| RNA helicase/RNAse III [Aspergillus fumigatus Af293] gi|129558032|gb|EAL91433.2| RNA helicase/RNAse III, putative [Aspergillus fumigatus Af293] Length = 1546 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 85/235 (36%), Gaps = 23/235 (9%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+ +GY F LL A+TH S+ ++ Y+RLEFLGD +L ++ LF F Sbjct: 1277 VEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPD 1336 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT------------S 113 LS ++VS + ++ +L I S+ + + + Sbjct: 1337 RDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQGA 1396 Query: 114 IQADVVESLIAALYLDGGIEV-----AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 D+VE+ + A+++D + K + + F T Sbjct: 1397 CLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSIYDTFANKHPTTFLHNKLTN 1456 Query: 169 FGVTPEYKVTFRSGP--DHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y + P D P V + G ++ S R A+ A+ + L Sbjct: 1457 EYGCTNYCLKAGELPTIDGAPATVLAAVIVHGNVISEARSSSSRYAKITASEKAL 1511 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 12/98 (12%) Query: 20 RSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +A T H ++YERLEFLGD L + S LF+ + Sbjct: 1078 PDFALEAFTKDSDNTEEHRGQQIHFQRGMGKNYERLEFLGDCFLKMATSIALFSQNPNDD 1137 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 E + V L+ + A + + +IR R Sbjct: 1138 EFDYHVNRMCLICNKNLFNTAIKKQIYRYIRSRGFSRH 1175 >gi|307133775|ref|NP_001182502.1| endoribonuclease Dicer isoform 2 [Homo sapiens] gi|300517087|gb|ADK25182.1| t-Dicer [Homo sapiens] Length = 1829 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ + +A + D + + Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 1759 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS + VS ++ ++ L + Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1393 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E D L D + E W K E +H Sbjct: 1394 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1451 Query: 189 FTVVVEISGLAPAQG 203 I + G Sbjct: 1452 -----FIDNMLMGSG 1461 >gi|114654621|ref|XP_001154071.1| PREDICTED: dicer1 isoform 2 [Pan troglodytes] Length = 1868 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ + +A + D + + Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 1759 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS + VS ++ ++ L + Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1393 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E D L D + E W K E +H Sbjct: 1394 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1451 Query: 189 FTVVVEISGLAPAQG 203 I + G Sbjct: 1452 -----FIDNMLMGSG 1461 >gi|254431519|ref|ZP_05045222.1| ribonuclease III [Cyanobium sp. PCC 7001] gi|197625972|gb|EDY38531.1| ribonuclease III [Cyanobium sp. PCC 7001] Length = 245 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 76/212 (35%), Gaps = 14/212 (6%) Query: 19 NRSLL---EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 + +LL E+ALTH+S + ++ERLEFLGD +L L S L H G S Sbjct: 29 DPALLAPIEEALTHTSA--RQRGNHERLEFLGDAVLRLAASEYLHRHHPQLGVGSQSALR 86 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 + LVS +++A L + R+ + + + + Sbjct: 87 SQLVSDRWLAELADSCGLETVWRI--GPMARGDRAGIATVRAELCEALIGAVYRCWGDSL 144 Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD------PRF 189 + S + D + A ++ + S + RF Sbjct: 145 EPVLTWLTPHWQQASQELLADPDRHNWKSALQEWTQGQGLGLPSYSCEERSTLHADPRRF 204 Query: 190 TVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVL 220 + + + G G S+RAAEQ AA + L Sbjct: 205 SCRLTLGAGNESWDGWGPSRRAAEQDAARQAL 236 >gi|59800710|ref|YP_207422.1| ribonuclease III [Neisseria gonorrhoeae FA 1090] gi|75432565|sp|Q5F9X7|RNC_NEIG1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|59717605|gb|AAW89010.1| putative ribonuclease III [Neisseria gonorrhoeae FA 1090] Length = 239 Score = 89.2 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 12 TAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 68 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 69 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAAV 128 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + +R + +D KT LQE A+ P+Y++ + G Sbjct: 129 SFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 188 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 D F + ++ L + S+ Sbjct: 189 DDSMFVISCDLGELGFVCRAKGTSR 213 >gi|297836192|ref|XP_002885978.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297331818|gb|EFH62237.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 740 Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 86/243 (35%), Gaps = 24/243 (9%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + +EK + Y+F N++LL +ALTH+S S ++RL F+G + L + ++ Sbjct: 369 DSDPVKAVEKILNYSFTNKNLLREALTHNS---SNLLPFQRLMFVGKAGISLAFANHMYL 425 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD---- 117 + EL++ N+ + ++VA + + F++ + K + Sbjct: 426 TYPKLGPKELTMLQNANTCNDRYARVAVKRGIYQFLKCNVRTSKRQIIEFIKMLGKEDDP 485 Query: 118 ----------------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 + + ++ ++ + ++ R+ Sbjct: 486 DPFRSVKAPKILTDLVESVAGAVYIDVNRDVKRLWEILRGLFEPIYTLDDIRRKPHPLLT 545 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTV-VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 K G E++ T+ V + A G C++ A++ AA L Sbjct: 546 LFCLGYKHGKRIEFRYRECEKSSGMNEATITEVYVDDKFIACGKSCNRAASKMRAATMAL 605 Query: 221 KRE 223 ++ Sbjct: 606 EKL 608 Score = 74.6 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 96/269 (35%), Gaps = 47/269 (17%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTL 58 M ++ +EK + Y F +++LL++A+T +S S++ S +ERLEFLGD +L ++ S Sbjct: 1 MESV--EAVEKILNYTFTDKNLLKEAITKTSGSNTESSSLLFERLEFLGDSVLLVVFSNH 58 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS------------------ 100 + + + +L+ + VS ET ++VA +L FI Sbjct: 59 IEITYPNLHPNDLNDVRIANVSNETFARVAVNNNLHQFIIFDAPNPLLHKMSHVLTNKWC 118 Query: 101 ----------------SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 AD+VE++ A+Y+D +V + Sbjct: 119 HVLKIKDFSEAVKEEVYPAPCGGLVKAPKFLADLVEAIAGAVYIDVDFDVQRVWEIFRVL 178 Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS---GPDHDPRFTVVV-----EIS 196 + + R + F GP + +F V + Sbjct: 179 VEPICTLDDLRKQPERTYLRLLGLGDKLGKRIEVFFEEEGGPKIEQKFVCSVNIEIPSVE 238 Query: 197 GLAPAQGMDCS-KRAAEQVAAAEVLKREG 224 + +G S K A+ +A ++ Sbjct: 239 SIFHMKGDAKSTKTQAQNSSAYYMIGALK 267 >gi|328696734|ref|XP_003240110.1| PREDICTED: endoribonuclease dcr-1-like isoform 3 [Acyrthosiphon pisum] Length = 1630 Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 40/112 (35%), Positives = 59/112 (52%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y LE+RIGY+F ++ LL +ALTH + + E Y+RLEFLGD IL LI+T + H Sbjct: 1373 YELLERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYH 1432 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 GE++ +SLV+ T + ++ + L FI S + Q Sbjct: 1433 KTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQK 1484 >gi|224101241|ref|XP_002312197.1| dicer-like protein [Populus trichocarpa] gi|222852017|gb|EEE89564.1| dicer-like protein [Populus trichocarpa] Length = 1468 Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 81/242 (33%), Gaps = 21/242 (8%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + LE + Y+F + SLL +ALTH S Y+RLEFLGD +L LI+ ++ Sbjct: 1214 VNVRYLESLLNYSFNDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITLHMYKE 1273 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + G L+ ++ V+ + + A ++ L I +S + Sbjct: 1274 YPGMSPGLLTDLRSASVNNDCYALSAVKVGLDRHILHASHDLHKHIVATVKKIQEFSLES 1333 Query: 123 IAALYLDGGIE-------------------VAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 + V + + ++E Sbjct: 1334 TFGWESETAFPKVLGDVIESLAGAILVDSGYNKEVVFESIRPLLEPLITPETLRLQPVRE 1393 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222 +YK S + T+ VE +GL K A+++A+ EVLK Sbjct: 1394 LNELCQRQHFDYKKPIVSRNGRNASVTIEVEANGLIFKHTATVADKTTAKKLASKEVLKA 1453 Query: 223 EG 224 Sbjct: 1454 LK 1455 >gi|157414210|ref|YP_001485076.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9215] gi|157388785|gb|ABV51490.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9215] Length = 249 Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 10/227 (4%) Query: 3 ALRYSTLEKRIGYAFANRSL---LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 ++ + + I + S+ +A HSS +YE+LEF GD +L L S + Sbjct: 21 NIKSNRFSEII--RTQDISVMQDFNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASNFI 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + GE S +VS E +++ ++D+ I D S T I Sbjct: 77 EKKYPQMSVGERSELRAQIVSDEWLTKLGEKIDIEKLIIKGPKALGDENSKNTIIGEATE 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKV 177 + A I+ ++D W++ + ++ +KT LQEW +K P YK+ Sbjct: 137 ALIGAVYKCFNSIQEVNLWLDDIWEKDSEIFLKAPYKFKSKTVLQEWCQSKGFDLPIYKI 196 Query: 178 TFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 S + DP RF+ + I GL + S + AE AA ++++ Sbjct: 197 IEFSKKNGDPKRFSCDIHIEGLKESSAFGKSHKQAETNAARVLIEKL 243 >gi|158706522|sp|Q4WVE3|DCL1_ASPFU RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent helicase dcl1 Length = 1537 Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 83/247 (33%), Gaps = 35/247 (14%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+ +GY F LL A+TH S+ ++ Y+RLEFLGD +L ++ LF F Sbjct: 1256 VEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPD 1315 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---------------------- 103 LS ++VS + ++ +L I S+ Sbjct: 1316 RDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQGA 1375 Query: 104 --RKDVCSFMTSIQADVVESLIAALYLDGGIEV-----AGTFVDKYWKQRALKSGKFRRD 156 V D+VE+ + A+++D + K + + F Sbjct: 1376 VDYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSIYDTFANK 1435 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGP--DHDP-RFTVVVEISGLAPAQGMDCSKRAAEQ 213 T Y + P D P V + G ++ S R A+ Sbjct: 1436 HPTTFLHNKLTNEYGCTNYCLKAGELPTIDGAPATVLAAVIVHGNVISEARSSSSRYAKI 1495 Query: 214 VAAAEVL 220 A+ + L Sbjct: 1496 TASEKAL 1502 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 12/98 (12%) Query: 20 RSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +A T H ++YERLEFLGD L + S LF+ + Sbjct: 1057 PDFALEAFTKDSDNTEEHRGQQIHFQRGMGKNYERLEFLGDCFLKMATSIALFSQNPNDD 1116 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 E + V L+ + A + + +IR R Sbjct: 1117 EFDYHVNRMCLICNKNLFNTAIKKQIYRYIRSRGFSRH 1154 >gi|328696730|ref|XP_003240109.1| PREDICTED: endoribonuclease dcr-1-like isoform 2 [Acyrthosiphon pisum] Length = 1648 Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 40/112 (35%), Positives = 59/112 (52%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y LE+RIGY+F ++ LL +ALTH + + E Y+RLEFLGD IL LI+T + H Sbjct: 1391 YELLERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYH 1450 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 GE++ +SLV+ T + ++ + L FI S + Q Sbjct: 1451 KTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQK 1502 >gi|225024664|ref|ZP_03713856.1| hypothetical protein EIKCOROL_01546 [Eikenella corrodens ATCC 23834] gi|224942553|gb|EEG23762.1| hypothetical protein EIKCOROL_01546 [Eikenella corrodens ATCC 23834] Length = 257 Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 61/194 (31%), Positives = 99/194 (51%), Gaps = 5/194 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L++ +G++F N L E+ALTH S S ++ ER EF+GD IL ++ +LF+ F Sbjct: 23 EELQRHLGHSFQNPRLFEQALTHRSYS---AQNNERFEFVGDAILDYSVAKMLFDAFPGY 79 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS +LV+ + +++AR + + + + K SI AD VE+L+AA+ Sbjct: 80 SEGELSRLRANLVNQDVLAEIARSMGVGDALYLGVGELKSGGFDRPSILADAVEALLAAI 139 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + + +R +D KT LQE A+ P+Y++ +SG Sbjct: 140 SFDADFAAAEQTVRRLFARRIANIDLSNQGKDPKTLLQEALQARRLPLPKYRIEHQSGEG 199 Query: 185 HDPRFTVVVEISGL 198 D RF + ++ L Sbjct: 200 CDARFDIACDLGEL 213 >gi|328696732|ref|XP_001945890.2| PREDICTED: endoribonuclease dcr-1-like isoform 1 [Acyrthosiphon pisum] Length = 1691 Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 40/112 (35%), Positives = 59/112 (52%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 Y LE+RIGY+F ++ LL +ALTH + + E Y+RLEFLGD IL LI+T + H Sbjct: 1434 YELLERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYH 1493 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 GE++ +SLV+ T + ++ + L FI S + Q Sbjct: 1494 KTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQK 1545 >gi|222625282|gb|EEE59414.1| hypothetical protein OsJ_11564 [Oryza sativa Japonica Group] Length = 1371 Score = 88.8 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 33/249 (13%) Query: 1 MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLIS 56 M A + +LE +GY F + LL +ALTH S Y+RLEFLGD IL L + Sbjct: 1118 MKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFT 1177 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----- 111 ++ + L+ ++ V+ + A + L I SS S+ Sbjct: 1178 EYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSF 1237 Query: 112 -------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158 + DV+ES+ A+YLD + + L + + Sbjct: 1238 TGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDP 1297 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAEQV 214 + + ++ D V+ + +K + A+++ Sbjct: 1298 VKGLQ---EFCDRRSFKITYEKNHVDGVSSVIARVKAGETTYS----ATKSGPCKLAKKL 1350 Query: 215 AAAEVLKRE 223 A+ VLK Sbjct: 1351 ASKAVLKDL 1359 >gi|71893762|ref|YP_279208.1| ribonuclease III [Mycoplasma hyopneumoniae J] gi|72080732|ref|YP_287790.1| ribonuclease III [Mycoplasma hyopneumoniae 7448] gi|71851889|gb|AAZ44497.1| ribonuclease III [Mycoplasma hyopneumoniae J] gi|71913856|gb|AAZ53767.1| ribonuclease III [Mycoplasma hyopneumoniae 7448] Length = 227 Score = 88.8 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 79/206 (38%), Gaps = 7/206 (3%) Query: 17 FANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 ++ + +ALTH S + + + YE LEFLGD ++ +S + EG + Sbjct: 18 PNSKQIYIQALTHKSYNFINPDKPHYEMLEFLGDSVINYAVS-KVIYDNFYKNEGNSTQI 76 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 + L S + + +++ L +++ + ++AD+ ES AA+ LD G E Sbjct: 77 RSLLTSTSSLANATKKVGLMNYVLLGRGA--SEIRENNKLKADIFESFCAAILLDQGFEK 134 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 F+ +Y + + + + + F + + D F V + Sbjct: 135 LNEFLSEYLYKDVNFDTEKQYKDPKSIFQEKIQTFSTSNKIHYLHTKLVDG--TFRVDLI 192 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVL 220 G S + AE AA L Sbjct: 193 WEKKKYGIGYGRSIKEAEFAAATNAL 218 >gi|41469333|gb|AAS07189.1| putative ribonuclease III, 5'-partial (with alternative splicing) [Oryza sativa Japonica Group] Length = 1017 Score = 88.8 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 85/249 (34%), Gaps = 29/249 (11%) Query: 1 MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLIS 56 M A + +LE +GY F + LL +ALTH S Y+RLEFLGD IL L + Sbjct: 760 MKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFT 819 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----- 111 ++ + L+ ++ V+ + A + L I SS S+ Sbjct: 820 EYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFG 879 Query: 112 ----------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + DV+ES+ A+YLD + + L + + Sbjct: 880 QSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIE 939 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 + + ++ D V+ A K A+++ Sbjct: 940 PDPVKGLQ---EFCDRRSFKITYEKNHVDGVSSVIARVKAGETTYSATKSGPCKLVAKKL 996 Query: 215 AAAEVLKRE 223 A+ VLK Sbjct: 997 ASKAVLKDL 1005 >gi|115453927|ref|NP_001050564.1| Os03g0583900 [Oryza sativa Japonica Group] gi|122246906|sp|Q10HL3|DCL2A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2a; AltName: Full=Dicer-like protein 2a; Short=OsDCL2a gi|50399921|gb|AAT76309.1| putative RNA helicase/RNAseIII protein, C-terminus truncated [Oryza sativa Japonica Group] gi|108709535|gb|ABF97330.1| Type III restriction enzyme, res subunit family protein, expressed [Oryza sativa Japonica Group] gi|113549035|dbj|BAF12478.1| Os03g0583900 [Oryza sativa Japonica Group] gi|215701504|dbj|BAG92928.1| unnamed protein product [Oryza sativa Japonica Group] Length = 1410 Score = 88.8 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 85/249 (34%), Gaps = 29/249 (11%) Query: 1 MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLIS 56 M A + +LE +GY F + LL +ALTH S Y+RLEFLGD IL L + Sbjct: 1153 MKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFT 1212 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----- 111 ++ + L+ ++ V+ + A + L I SS S+ Sbjct: 1213 EYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFG 1272 Query: 112 ----------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + DV+ES+ A+YLD + + L + + Sbjct: 1273 QSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIE 1332 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 + + ++ D V+ A K A+++ Sbjct: 1333 PDPVKGLQ---EFCDRRSFKITYEKNHVDGVSSVIARVKAGETTYSATKSGPCKLVAKKL 1389 Query: 215 AAAEVLKRE 223 A+ VLK Sbjct: 1390 ASKAVLKDL 1398 >gi|218193216|gb|EEC75643.1| hypothetical protein OsI_12390 [Oryza sativa Indica Group] Length = 1318 Score = 88.8 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 85/249 (34%), Gaps = 29/249 (11%) Query: 1 MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLIS 56 M A + +LE +GY F + LL +ALTH S Y+RLEFLGD IL L + Sbjct: 1061 MKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFT 1120 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----- 111 ++ + L+ ++ V+ + A + L I SS S+ Sbjct: 1121 EYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFG 1180 Query: 112 ----------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + DV+ES+ A+YLD + + L + + Sbjct: 1181 QSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIE 1240 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214 + + ++ D V+ A K A+++ Sbjct: 1241 PDPVKGLQ---EFCDRRSFKITYEKNHVDGVSSVIARVKAGETTYSATKSGPCKLVAKKL 1297 Query: 215 AAAEVLKRE 223 A+ VLK Sbjct: 1298 ASKAVLKDL 1306 >gi|312871483|ref|ZP_07731577.1| ribonuclease III [Lactobacillus iners LEAF 3008A-a] gi|311093003|gb|EFQ51353.1| ribonuclease III [Lactobacillus iners LEAF 3008A-a] Length = 189 Score = 88.8 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 3/148 (2%) Query: 1 MSALRYS-TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57 M + + L+++ F N LLE+ALTHSS S+ +Q ++YE+LEFLGD +L L IS Sbjct: 1 MVSESFKNELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISD 60 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ HF + EGEL+ +++V E SQ A E + +++ K ++ D Sbjct: 61 YLYRHFPNMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLED 120 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQ 145 V E+ AL+LD G+ F+ Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYP 148 >gi|254493164|ref|ZP_05106335.1| ribonuclease III [Neisseria gonorrhoeae 1291] gi|268600776|ref|ZP_06134943.1| ribonuclease III [Neisseria gonorrhoeae PID18] gi|226512204|gb|EEH61549.1| ribonuclease III [Neisseria gonorrhoeae 1291] gi|268584907|gb|EEZ49583.1| ribonuclease III [Neisseria gonorrhoeae PID18] Length = 267 Score = 88.8 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 40 TAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 96 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 97 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAAV 156 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + +R + +D KT LQE A+ P+Y++ + G Sbjct: 157 SFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 216 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 +D F + ++ L + S+ Sbjct: 217 NDSMFVISCDLGELGFVCRAKGTSR 241 >gi|268598421|ref|ZP_06132588.1| ribonuclease III [Neisseria gonorrhoeae MS11] gi|291044414|ref|ZP_06570123.1| ribonuclease III [Neisseria gonorrhoeae DGI2] gi|268582552|gb|EEZ47228.1| ribonuclease III [Neisseria gonorrhoeae MS11] gi|291011308|gb|EFE03304.1| ribonuclease III [Neisseria gonorrhoeae DGI2] Length = 267 Score = 88.8 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 40 TAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 96 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 97 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 156 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + +R + +D KT LQE A+ P+Y++ + G Sbjct: 157 SFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 216 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 D F + ++ L + S+ Sbjct: 217 DDSMFVISCDLGELGFVCRAKGTSR 241 >gi|251764794|sp|Q69LX2|DCL2B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2b; AltName: Full=Dicer-like protein 2b; Short=OsDCL2b Length = 1377 Score = 88.8 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 33/249 (13%) Query: 1 MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLIS 56 M A + +LE +GY F + LL +ALTH S Y+RLEFLGD IL L + Sbjct: 1124 MKAEEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFT 1183 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----- 111 ++ + L+ ++ V+ + A + L I SS S+ Sbjct: 1184 EYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSF 1243 Query: 112 -------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158 + DV+ES+ A+YLD + + L + + Sbjct: 1244 TGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDP 1303 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAEQV 214 + + ++ D V+ + +K + A+++ Sbjct: 1304 VKGLQ---EFCDRRSFKITYEKNHVDGVSSVIARVKAGETTYS----ATKSGPCKLAKKL 1356 Query: 215 AAAEVLKRE 223 A+ VLK Sbjct: 1357 ASKAVLKDL 1365 >gi|50726394|dbj|BAD34005.1| CAF protein-like [Oryza sativa Japonica Group] gi|51091635|dbj|BAD36404.1| CAF protein-like [Oryza sativa Japonica Group] Length = 1375 Score = 88.8 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 33/249 (13%) Query: 1 MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLIS 56 M A + +LE +GY F + LL +ALTH S Y+RLEFLGD IL L + Sbjct: 1122 MKAEEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFT 1181 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----- 111 ++ + L+ ++ V+ + A + L I SS S+ Sbjct: 1182 EYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSF 1241 Query: 112 -------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158 + DV+ES+ A+YLD + + L + + Sbjct: 1242 TGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDP 1301 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAEQV 214 + + ++ D V+ + +K + A+++ Sbjct: 1302 VKGLQ---EFCDRRSFKITYEKNHVDGVSSVIARVKAGETTYS----ATKSGPCKLAKKL 1354 Query: 215 AAAEVLKRE 223 A+ VLK Sbjct: 1355 ASKAVLKDL 1363 >gi|78780081|ref|YP_398193.1| RNAse III [Prochlorococcus marinus str. MIT 9312] gi|78713580|gb|ABB50757.1| RNAse III [Prochlorococcus marinus str. MIT 9312] Length = 249 Score = 88.4 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 10/226 (4%) Query: 3 ALRYSTLEKRIGYAFANRSLLE---KALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 ++ + I N S+++ +A HSS +YE+LEF GD +L L S + Sbjct: 21 NIKSERFSEII--RKQNISVIQDFNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASNFI 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ GE S +VS E +++ R++D+ I D S T I Sbjct: 77 EKNYPQMSVGERSELRAQIVSDEWLTKLGRKIDIEKLIIKGPKALGDQNSKNTIIGEATE 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKV 177 + A I+ ++D W++ + ++ +KT LQEW +K P YK+ Sbjct: 137 ALIGAVYKCFNSIQEVNLWLDDIWEEDSEIFLKAPYKFKSKTVLQEWCQSKGFDLPVYKI 196 Query: 178 TFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 S + DP RF+ + + GL + S + AE AA ++++ Sbjct: 197 IEVSKKNGDPKRFSCDIFVEGLKESSAFGKSHKQAETNAAKVLIEK 242 >gi|123969345|ref|YP_001010203.1| putative ribonuclease III [Prochlorococcus marinus str. AS9601] gi|123199455|gb|ABM71096.1| putative ribonuclease III [Prochlorococcus marinus str. AS9601] Length = 249 Score = 88.4 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 14/228 (6%) Query: 3 ALRYSTLEKRIGYAFANRSL-----LEKALTHSSISHSYQESYERLEFLGDRILGLLIST 57 ++ + I N+ + +A HSS +YE+LEF GD +L L S Sbjct: 21 NIKSKRFSEII----RNQDISVIQDFNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASN 74 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 + + GE S +VS E +++ ++D+ I D S T I Sbjct: 75 FIEKKYPQMSVGERSELRAQIVSDEWLTKLGEKIDIEKLIIKGPKAIGDENSKNTIICEA 134 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEY 175 + A I+ ++D W++ + ++ +KT LQEW +K P Y Sbjct: 135 TEALIGAIYKCFSSIKEVNLWLDDIWEEDSEIFLKSPYKFKSKTVLQEWCQSKGFDLPVY 194 Query: 176 KVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K+ S + DP RF + I GL + S + AE AA ++++ Sbjct: 195 KIIEVSKKNGDPERFYCNIFIEGLKESSAFGKSHKQAETNAARVLIEK 242 >gi|6715634|gb|AAF26461.1|AC007323_2 T25K16.4 [Arabidopsis thaliana] Length = 2024 Score = 88.4 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 82/257 (31%), Gaps = 45/257 (17%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ + LE+ + Y F + LL +A+TH+S S Y+RLEF+GD +L LI+ LF Sbjct: 1643 KSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFF 1702 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S G L+ + V+ E ++VA + L ++R S + + + +S Sbjct: 1703 TYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQVNKIKKQSILFSKS 1762 Query: 122 LIAALYL----DGGIEVAGTFVDKYWKQRA------------------------------ 147 E + K Sbjct: 1763 FKCLTVWLLFVFQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1822 Query: 148 ------LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-----PRFTVVVEIS 196 K + + E G ++ TV V I Sbjct: 1823 KDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFID 1882 Query: 197 GLAPAQGMDCSKRAAEQ 213 G+ + K+ A++ Sbjct: 1883 GVQVGVAQNPQKKMAQK 1899 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 1433 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1489 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1490 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1520 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 8/79 (10%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMD 205 + + L + K P Y+ GP H RFT V ++ + M Sbjct: 1943 HQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPM- 2001 Query: 206 CSKRAAEQVAAAEVLKREG 224 S + A+ AA +L+ Sbjct: 2002 PSVKKAKDSAAVLLLELLN 2020 >gi|297794783|ref|XP_002865276.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp. lyrata] gi|297311111|gb|EFH41535.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp. lyrata] Length = 892 Score = 88.4 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 88/245 (35%), Gaps = 29/245 (11%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + +EK + Y+F N++LL + LTH + ++RL F+G+ L L + L+ Sbjct: 345 MDSDSVEAVEKILNYSFVNKNLLNELLTH-----NTSPLFQRLMFVGEPALSLAFTKHLY 399 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR--------------------VS 100 + + +LS+ ++ + ++VA + + FI Sbjct: 400 LTYPKLEPKDLSLLRDANACNDRYARVAVKKGIYQFIISNVEKPERMILDFIDMMGKEDD 459 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 D I A++V ++ A+Y+D V + + + R Sbjct: 460 PDPDPYRVVKAPKILANLVAAVAGAVYIDVNYNVQRLWEIFRGLFEPIYTLDDLRMQPKP 519 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA--AEQVAAAE 218 + S D + V + + A G SKR A+ +AA E Sbjct: 520 PFLMLFRLADKHGKRIDFRYSKVDGSRKNIAQVYLDDMFIASGC--SKRIDTAKLLAAEE 577 Query: 219 VLKRE 223 L++ Sbjct: 578 ALQKL 582 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 8/93 (8%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ +EK + Y+F N++LL+ A+T S ++RLEF GD +L + + + Sbjct: 1 MDSV--EAVEKILNYSFTNKTLLKDAITQRS------TLFDRLEFFGDSVLEVAFTNYIR 52 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 + + + K EL + VS E ++VA L + Sbjct: 53 HTYPNLKVKELCDLRTANVSNEKFARVAEILQI 85 Score = 44.1 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 6/117 (5%) Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 + + + K D + +L E Sbjct: 203 KLFEICYTRKLQIQTGSSANPLTYEMTTKQMVVDKDSLHVEPTDGRGKLIEICTKNKWPR 262 Query: 173 PEYKVTFRSGPDHDPRFTVVVE-----ISGLAPAQGMDCSKRA-AEQVAAAEVLKRE 223 P + V GP ++ +F V+ I G +G SK+ AE +A +++ Sbjct: 263 PIFSVEEERGPKNEQKFVCSVKIEIPNIEGSFHMKGDAKSKKKQAENSSAYHMIRAL 319 >gi|167046020|gb|ABZ10541.1| dicer-like protein B [Trichoplax adhaerens] Length = 357 Score = 88.4 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 4/105 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIST 57 +A LE +GY+F +R LL ALTH++ +H E Y+RLEFLGD IL ++ Sbjct: 180 NAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAILQYIVVR 239 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 ++ ++ K +L + + E+ + + + + +S Sbjct: 240 HCYHANNNYKPADLHDFVEASLQNESLAVMTMVYGIHKYFFYNSP 284 Score = 38.0 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 KALT + + + + E LEFLGD L +S F + EG+LS + +VS E Sbjct: 1 LKALTLARANDDF--NLETLEFLGDSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNEN 58 Query: 84 CSQVARELDLASFIRVSSDLRKDVC 108 Q+ ++ L +I + + D+ Sbjct: 59 LYQIGIKMGLPGYIIGHNVDQNDIW 83 >gi|89114026|gb|ABD61604.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 88.4 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L +I+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYIITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G L+ ++LV+ + +A F R Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764 >gi|119487905|ref|ZP_01621402.1| Ribonuclease III [Lyngbya sp. PCC 8106] gi|119455481|gb|EAW36619.1| Ribonuclease III [Lyngbya sp. PCC 8106] Length = 242 Score = 88.4 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 9/211 (4%) Query: 5 RYSTLEKRIGYAFAN---RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +R+G + + LL+ ALTH SIS +YE+LEF+GD ++ L S L+ Sbjct: 11 QLQKLVERLGLSEQDAIQWHLLDLALTHPSISME--ANYEQLEFVGDAVVRLAASEFLWE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--LRKDVCSFMTSIQADVV 119 + GE S + LVS +++A + ++ + + + + + Sbjct: 69 TYPKQPVGEFSAIRSVLVSDRFLAEIAESYGMGRYLLIGGSAAQDRMGEQSRLADCLEAI 128 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + + + R++ K LQEW + + V PEY VT Sbjct: 129 LAAFYLSTHNLQLIHPWLEPHFQKGATQILRDPARQNYKAALQEWTQSHYKVLPEYTVTE 188 Query: 180 RSGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209 SGP D R+T V G +G S + Sbjct: 189 -SGPMGDEERYTAQVWFQGKPVGEGRGRSIK 218 >gi|167046022|gb|ABZ10542.1| dicer-like protein B [Placozoa sp. DMJ-2008] Length = 357 Score = 88.4 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 4/105 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIST 57 +A LE +GY+F +R LL ALTH++ +H E Y+RLEFLGD IL ++ Sbjct: 180 NAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAILQYIVVR 239 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 ++ ++ K +L + + E+ + + + + +S Sbjct: 240 HCYHANNNYKPADLHDFVEASLQNESLAAMTMVYGIHKYFFYNSP 284 >gi|89114046|gb|ABD61614.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 88.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G L+ ++LV+ + +A F R Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764 >gi|89114024|gb|ABD61603.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 88.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G L+ ++LV+ + +A F R Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764 >gi|89114020|gb|ABD61601.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 88.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G L+ ++LV+ + +A F R Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764 >gi|89114022|gb|ABD61602.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 88.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G L+ ++LV+ + +A F R Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764 >gi|89114040|gb|ABD61611.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 88.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G L+ ++LV+ + +A F R Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764 >gi|89114034|gb|ABD61608.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 88.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G L+ ++LV+ + +A F R Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764 >gi|89114050|gb|ABD61616.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 88.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G L+ ++LV+ + +A F R Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764 >gi|89114048|gb|ABD61615.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 88.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G L+ ++LV+ + +A F R Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764 >gi|89114042|gb|ABD61612.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 88.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G L+ ++LV+ + +A F R Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764 >gi|89114038|gb|ABD61610.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 88.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G L+ ++LV+ + +A F R Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764 >gi|89114032|gb|ABD61607.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 88.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G L+ ++LV+ + +A F R Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764 >gi|89114044|gb|ABD61613.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 88.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G L+ ++LV+ + +A F R Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764 >gi|89114036|gb|ABD61609.1| Dicer-1 [Drosophila simulans] Length = 2043 Score = 88.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G L+ ++LV+ + +A F R Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764 >gi|89114030|gb|ABD61606.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 88.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G L+ ++LV+ + +A F R Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764 >gi|167538060|ref|XP_001750696.1| hypothetical protein [Monosiga brevicollis MX1] gi|163770830|gb|EDQ84509.1| predicted protein [Monosiga brevicollis MX1] Length = 603 Score = 88.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 99/223 (44%), Gaps = 17/223 (7%) Query: 15 YAFANRSLLEK----ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 Y+ AN + + + ALTH S + + Q S ERLEFLGDR+L L + L++ F EG Sbjct: 289 YSAANITYVLERTRPALTHGSRASAEQPSNERLEFLGDRVLNLAAAEHLYHAFPKEGEGV 348 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ + +++V+A+ +A+ L L I+V + S T + D VE+L+ A+ LDG Sbjct: 349 LTKKLSAMVNAQALHGMAKRLKLDQHIQVIEGVDL---SERTRVLGDAVEALLGAILLDG 405 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 G A W + ++A L + + S + + Sbjct: 406 GWPAALAVTHHLWSISHTPTRTNFKEALQILAQKFEPHELPIYTPRGCDES--ESVRTWH 463 Query: 191 VVVEIS--------GLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 V VE + G S +AAEQ AA VLK+ I Sbjct: 464 VRVEANLPSSWWGPIQLMGHGQGTSIKAAEQAAAISVLKQLNI 506 >gi|210622528|ref|ZP_03293221.1| hypothetical protein CLOHIR_01169 [Clostridium hiranonis DSM 13275] gi|210154163|gb|EEA85169.1| hypothetical protein CLOHIR_01169 [Clostridium hiranonis DSM 13275] Length = 204 Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 63/184 (34%), Positives = 89/184 (48%), Gaps = 4/184 (2%) Query: 29 HSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86 HSS S+ ++ ER+EFLGD +LGL+IS +F EGEL+ ++V + S+ Sbjct: 1 HSSYSNENKKFKYNERMEFLGDSVLGLVISDHIFKKETGVPEGELTKLRANIVCEGSLSE 60 Query: 87 VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146 A+ + L +I + SI AD E++IAA+YLDGGIE A F+ Sbjct: 61 AAKNIRLGDYILLGRGEEATGGRERKSILADAFEAVIAAIYLDGGIESASKFILSNLSDI 120 Query: 147 ALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 S K RD KT+LQE YK+ GPDH+ F ++V + G Sbjct: 121 IKDSIDGKIFRDYKTQLQEEIQKNGSSNIWYKLLDEDGPDHNKTFIMMVGVEDRELGVGK 180 Query: 205 DCSK 208 SK Sbjct: 181 GKSK 184 >gi|241896736|emb|CAZ65730.1| dicer-2 protein [Mucor circinelloides f. lusitanicus] Length = 1608 Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 90/251 (35%), Gaps = 33/251 (13%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 +L + + +G F L+ +ALTH+S+ +S Y+RLEFLGD IL ++ LF Sbjct: 1322 SLDLPKVTEIVGREFKTPLLIVEALTHASLPNSTSPCYQRLEFLGDAILDFMVIRYLFAR 1381 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL------------------- 103 + A G ++ +S V+ V E L I S Sbjct: 1382 YPDADPGIITDLKDSCVNNHILGIVCIETGLYRHIIHYSGKLIRAIEFFVSEVEETKARG 1441 Query: 104 ----RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFR 154 V + + +DVVES++ A ++D G E + + Sbjct: 1442 EAVGEYWVDFNIPKVLSDVVESMLGATFVDAGFRLEAVEELFAKWFLPILNNHVTPELIK 1501 Query: 155 RDAKTELQEWAHAKFGVTPEYKVTF--RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 +L + + +GP+ V+ + A G D + + A Sbjct: 1502 FHPLRKLITDLQRFGCDSFMLRNHGSGETGPESQK---CVIFLHDKPLATGSDWNIKTAR 1558 Query: 213 QVAAAEVLKRE 223 + AA + +R Sbjct: 1559 RHAATKASQRL 1569 Score = 41.8 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +A T S + +YERLE LGD +L + + L+ +F + EGEL ++ Sbjct: 1151 LEAYTTPSANMEM--NYERLETLGDSLLKFIATIRLYINFPFSNEGELHHLRIRVICNRA 1208 Query: 84 CSQVARELDLASFIRVSSDLRKD 106 + A+ L ++ + R+ Sbjct: 1209 LYRSAKRLKFYRYVTSQAFNRRY 1231 >gi|119478976|ref|XP_001259517.1| RNase3 domain protein [Neosartorya fischeri NRRL 181] gi|158706438|sp|A1DE13|DCL1_NEOFI RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl1; Includes: RecName: Full=ATP-dependent helicase dcl1 gi|119407671|gb|EAW17620.1| RNase3 domain protein [Neosartorya fischeri NRRL 181] Length = 1538 Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 84/247 (34%), Gaps = 35/247 (14%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+ +GY F LL A+TH S+ ++ Y+RLEFLGD +L ++ LF F Sbjct: 1257 VEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPD 1316 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---------------------- 103 L+ ++VS + ++ +L I S+ Sbjct: 1317 RDPQWLTEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIESAQAESRGA 1376 Query: 104 --RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRRD 156 V D+VE+ + A+++D EV K + + F Sbjct: 1377 VDYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDFQVIEVFFERQIKPFFEDMSIYDTFANK 1436 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGP--DHDP-RFTVVVEISGLAPAQGMDCSKRAAEQ 213 T Y + P D P V + G ++ S R A+ Sbjct: 1437 HPTTFLHNKLTNEYGCTNYCLKAGELPTIDGAPAGVLAAVIVHGNVISEARSSSSRYAKV 1496 Query: 214 VAAAEVL 220 A+ + L Sbjct: 1497 KASEKAL 1503 Score = 45.7 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 12/98 (12%) Query: 20 RSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +A T H ++YERLEFLGD L + S L+ Sbjct: 1058 PDFALEAFTKDSDNTEEHRGQQIHFQRGMGKNYERLEFLGDCFLKMATSIALYTQNPDDD 1117 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 E + V L+ + A + + +IR R Sbjct: 1118 EFDYHVNRMCLICNKNLFNTAIKKQIYRYIRSRGFSRH 1155 >gi|120403163|ref|YP_952992.1| ribonuclease III [Mycobacterium vanbaalenii PYR-1] gi|119955981|gb|ABM12986.1| RNAse III [Mycobacterium vanbaalenii PYR-1] Length = 235 Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 6/193 (3%) Query: 21 SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 LL ALTH S S+ + ERLEFLGD +LGL I+ L++ EG+L+ S+ Sbjct: 19 ELLTIALTHRSYSYENGGVPTNERLEFLGDSVLGLTITEELYHRHPDRSEGDLAKLRASI 78 Query: 79 VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 V+ + + V R L L +++ + + +SI AD VESL+ A+YL+ G EVA Sbjct: 79 VNTQALADVGRNLTEHGLGAYLLLGKGEENSGGADKSSILADGVESLLGAIYLECGGEVA 138 Query: 136 GTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + + + + A G+ V +GPDHD FT V Sbjct: 139 REVILRLFSSLLDTAPTLGAGLDWKSSLQELTASRGLGAPTYVVTSTGPDHDKEFTAAVM 198 Query: 195 ISGLAPAQGMDCS 207 + +G+ + Sbjct: 199 VGDSECGRGVGRT 211 >gi|89114028|gb|ABD61605.1| Dicer-1 [Drosophila melanogaster] Length = 2043 Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F +RS L +A+TH+S + + + Y+RLEFLGD +L LI+ L+ Sbjct: 1936 FEKFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G L+ ++LV+ + +A F R Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S++ +ALT S+ + + ERLE +GD L I+T L+ +++ EG+LS + V Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + ++ R L ++ + D +E Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764 >gi|80979089|gb|ABB54747.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ T + + L FI + ++ S + Q + Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1543 Query: 123 IAAL 126 + Sbjct: 1544 TNYV 1547 Score = 38.8 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 3/121 (2%) Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 + DV+E+LIAA+YLD V + L+ + Q Sbjct: 1593 FNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTRKVPINHIRQ 1652 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H + +FT + G +K A+ AA L++ Sbjct: 1653 LVEHKHAKPVFSSPIVEGETVMVSCQFTC---MEKTIKVYGFGSNKDQAKLSAAKHALQQ 1709 Query: 223 E 223 Sbjct: 1710 L 1710 >gi|80979097|gb|ABB54751.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ T + + L FI + ++ S + Q + Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1543 Query: 123 IAAL 126 + Sbjct: 1544 TNYV 1547 Score = 38.8 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 3/121 (2%) Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 + DV+E+LIAA+YLD V + L+ + Q Sbjct: 1593 FNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTRKVPINHIRQ 1652 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H + +FT + G +K A+ AA L++ Sbjct: 1653 LVEHKHAKPVFSSPIVEGETVMVSCQFTC---MEKTIKVYGFGSNKDQAKLSAAKHALQQ 1709 Query: 223 E 223 Sbjct: 1710 L 1710 >gi|80979099|gb|ABB54752.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ T + + L FI + ++ S + Q + Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1543 Query: 123 IAAL 126 + Sbjct: 1544 TNYV 1547 Score = 38.8 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 3/121 (2%) Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 + DV+E+LIAA+YLD V + L+ + Q Sbjct: 1593 FNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTRKVPINHIRQ 1652 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H + +FT + G +K A+ AA L++ Sbjct: 1653 LVEHKHAKPVFSSPIVEGETVMVSCQFTC---MEKTIKVYGFGSNKDQAKLSAAKHALQQ 1709 Query: 223 E 223 Sbjct: 1710 L 1710 >gi|80979085|gb|ABB54745.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ T + + L FI + ++ S + Q + Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1543 Query: 123 IAAL 126 + Sbjct: 1544 TNYV 1547 Score = 38.8 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 3/121 (2%) Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 + DV+E+LIAA+YLD V + L+ + Q Sbjct: 1593 FNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTRKVPINHIRQ 1652 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H + +FT + G +K A+ AA L++ Sbjct: 1653 LVEHKHAKPVFSSPIVEGETVMVSCQFTC---MEKTIKVYGFGSNKDQAKLSAAKHALQQ 1709 Query: 223 E 223 Sbjct: 1710 L 1710 >gi|330913942|ref|XP_003296428.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1] gi|311331414|gb|EFQ95479.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1] Length = 1572 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 78/253 (30%), Gaps = 37/253 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E + Y F LL A H S + +Y+RLEFLGD +L + T L+ + Sbjct: 1283 KIEAKHPYHFKYPRLLRSAFAHPSYPYIYENIPNYQRLEFLGDSLLDMAFITHLYYKYPD 1342 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-------------- 111 L+ +VS + V +L +I+ ++ + Sbjct: 1343 KDPQWLTEHKTPMVSNKFLGAVCVKLGWHVYIKQNTAILTSQIRDYVLEAQEAERESGGA 1402 Query: 112 ----------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-------- 153 ADV+E+ AAL++D + + + Sbjct: 1403 VDYWVTISEPPKCLADVIEAYTAALFVDAEFDFSVVQDFFNLHLKPFFEDMTLDAYENFA 1462 Query: 154 RRDAKTELQEWAHAKFGVTPEYK---VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 T L FG T PD ++ I G + S R Sbjct: 1463 SNHPTTRLSRILSINFGCNDWRMGALETETIIPDKGKAIAAMIMIHGKVHFYSLGQSGRY 1522 Query: 211 AEQVAAAEVLKRE 223 A A+ L++ Sbjct: 1523 ARVRASHAALEKL 1535 Score = 43.4 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 12/76 (15%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +L +ALT S +YERLEFLGD L + S +F Sbjct: 1065 PALALEALTKDSENSEEHGEEKINFKSGMGPNYERLEFLGDCFLKMATSLSVFVQQPDEN 1124 Query: 68 EGELSVRFNSLVSAET 83 E E VR ++ + Sbjct: 1125 EFEFHVRRMEMLCNKN 1140 >gi|80979093|gb|ABB54749.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ T + + L FI + ++ S + Q + Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1543 Query: 123 IAAL 126 + Sbjct: 1544 TNYV 1547 Score = 38.8 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 3/121 (2%) Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 + DV+E+LIAA+YLD V + L+ + Q Sbjct: 1593 FNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTRKVPINHIRQ 1652 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H + +FT + G +K A+ AA L++ Sbjct: 1653 LVEHKHAKPVFSSPIVEGETVMVSCQFTC---MEKTIKVYGFGSNKDQAKLSAAKHALQQ 1709 Query: 223 E 223 Sbjct: 1710 L 1710 >gi|80979091|gb|ABB54748.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ T + + L FI + ++ S + Q + Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1543 Query: 123 IAAL 126 + Sbjct: 1544 TNYV 1547 Score = 38.8 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 3/121 (2%) Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 + DV+E+LIAA+YLD V + L+ + Q Sbjct: 1593 FNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTRKVPINHIRQ 1652 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H + +FT + G +K A+ AA L++ Sbjct: 1653 LVEHKHAKPVFSSPIVEGETVMVSCQFTC---MEKTIKVYGFGSNKDQAKLSAAKHALQQ 1709 Query: 223 E 223 Sbjct: 1710 L 1710 >gi|87123193|ref|ZP_01079044.1| putative ribonuclease III [Synechococcus sp. RS9917] gi|86168913|gb|EAQ70169.1| putative ribonuclease III [Synechococcus sp. RS9917] Length = 231 Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 13/227 (5%) Query: 7 STLEKRIGYAF----ANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 L +++G + + L L +ALTH+S +E+LEFLGD +L L + + Sbjct: 2 EQLWQQLGLSPPLPLKDDELAQLNEALTHTS--SGLHPHHEQLEFLGDAVLRLAATEFIA 59 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + GE S LVS + +Q+ ++ +A + ++ + DV +++A++ E Sbjct: 60 STQPQLPMGERSALRAQLVSDQWLAQLGEQIGIARWWQIGAMASGDVA-GHATLRAELSE 118 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI A+Y GG++ ++ YW+ + R ++K+ LQEW+ + P Y Sbjct: 119 ALIGAIYAIGGLQAVQAWLTPYWQPTSAAVLADPHRGNSKSALQEWSQGQALGLPAYDTR 178 Query: 179 FRSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 S DPR F V + L A+G S+R AEQ AAA +L Sbjct: 179 EASRRHGDPRRFHCRVSLPDL-LAEGWGGSRREAEQHAAAALLAEIK 224 >gi|313206470|ref|YP_004045647.1| rnase iii [Riemerella anatipestifer DSM 15868] gi|312445786|gb|ADQ82141.1| RNAse III [Riemerella anatipestifer DSM 15868] gi|315023589|gb|EFT36593.1| Ribonuclease III [Riemerella anatipestifer RA-YM] gi|325336084|gb|ADZ12358.1| dsRNA-specific ribonuclease [Riemerella anatipestifer RA-GD] Length = 247 Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 13/223 (5%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LEK +G S ++A + S S +Y+RLEFLGD +LG ++S L+ + E Sbjct: 30 LEKILGIQPKEVSWYQEAFSLKSTSSQL--NYDRLEFLGDAVLGSIVSYYLYRQYPQESE 87 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G L+ + +V+ + +Q+ +L+L S + + F+ + +++E+L+ A+Y+ Sbjct: 88 GFLTQMKSKIVNRKNLNQIGEKLNLTSLVLKN------GSKFVADLSGNLLEALVGAIYM 141 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDP 187 D G E V + + + ++ T P Sbjct: 142 DFGYEKCQKVVLSKILTHSEMLKLENKIISYKSLLLEWSQKNKIKIDYKTEEEFLPSKVK 201 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL----KREGIW 226 F + + G A + SK+ +E+ AA K+E I Sbjct: 202 MFKTYIFVGGSKVASATETSKKKSEEKAAQRAFYTLNKKEKII 244 >gi|294787403|ref|ZP_06752656.1| ribonuclease III [Parascardovia denticolens F0305] gi|315227028|ref|ZP_07868815.1| ribonuclease III [Parascardovia denticolens DSM 10105] gi|294484759|gb|EFG32394.1| ribonuclease III [Parascardovia denticolens F0305] gi|315119478|gb|EFT82611.1| ribonuclease III [Parascardovia denticolens DSM 10105] Length = 290 Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 101/265 (38%), Gaps = 49/265 (18%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64 L +G + + LL +ALTH S ++ + +YERLEFLGD +L L+ + L+ Sbjct: 19 QELFDELGVSIS-PDLLIEALTHRSFANEHPGTRNYERLEFLGDAVLELVATETLYKAHP 77 Query: 65 SAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + EG++S + +VS E+ +++AR+ L ++ I + R+D + SI D+VESL Sbjct: 78 NYTEGQMSKIRSKVVSEESLAEIARDKLKISPMILLGIGERRDGGADKDSILCDIVESLF 137 Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 A++++ GIE A + + + + + + G Sbjct: 138 GAIFVEYGIETARKVIHRLLDDNLHYYTAEGPALDWKTAIVVKAHELDLGEVNYQMEVGG 197 Query: 183 PDHDPRFTVVVEI--------------------------------------------SGL 198 P + FT + + Sbjct: 198 PSNRLEFTAHLFLVKEPDADTAQGKSTATAENMASAGNKAHSENPESSVADDAGKTSGRQ 257 Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223 + G SKR A+ AA + + Sbjct: 258 EISVGHGSSKRKAQLDAAEKAWRLL 282 >gi|297739192|emb|CBI28843.3| unnamed protein product [Vitis vinifera] Length = 287 Score = 87.3 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 92/237 (38%), Gaps = 27/237 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+ +GY+F N+ LLE+A TH+S Q SYERLEF+GD +L LLI+ F + Sbjct: 30 LEGVEQILGYSFTNKRLLEEAYTHASCQK-NQFSYERLEFMGDSVLSLLITKEQFFLYPD 88 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL-----------------RKDVC 108 + G L+ ++ V E ++VA + L F+R + Sbjct: 89 LQPGRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHSNGQ 148 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHA 167 + + ADVVES I A+++D V + + + + TEL E Sbjct: 149 IEVPKVLADVVESTIGAVFVDCNCSVDTVWKVFKGLLEPMIVPETLKVHPVTELNERCQK 208 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVLKRE 223 + R G + I +G ++ A AA L Sbjct: 209 RGLKLEFKDSWQRRGD-------IDFYIEDYFAGRGEYPLRKDIALNRAAKAALNNI 258 >gi|293399592|ref|ZP_06643745.1| ribonuclease III [Neisseria gonorrhoeae F62] gi|291610161|gb|EFF39283.1| ribonuclease III [Neisseria gonorrhoeae F62] Length = 267 Score = 87.3 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++K++GYAF + SLL +ALTH S + + ER EF+GD IL ++ +LF+ F Sbjct: 40 TAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 96 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SLV+ +++A E+++ + + + K SI AD +E++ AA+ Sbjct: 97 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAAV 156 Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 D A V + +R + +D KT LQE A+ P+Y++ + G Sbjct: 157 SFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 216 Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208 D F + ++ L + S+ Sbjct: 217 DDSMFVISCDLGELGFVCRAKGTSR 241 >gi|257055001|ref|YP_003132833.1| RNAse III [Saccharomonospora viridis DSM 43017] gi|256584873|gb|ACU96006.1| RNAse III [Saccharomonospora viridis DSM 43017] Length = 250 Score = 87.3 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 7/207 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 ++L + +G + LL ALTH S ++ ERLEFLGD +LGL+++ L+ Sbjct: 14 TSLLEALGVEI-DSELLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLYRQHP 72 Query: 65 SAKEGELSVRFNSLVSAET---CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG+L+ S+V+ ++ E L + + + SI AD +E+ Sbjct: 73 DLPEGQLAKLRASVVNMHALAGVARSLGEGGLGAHLLLGKGEELTGGRDKASILADGLEA 132 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFR 180 +I A+YL+ GIE A + V + + + ++ + + A G+ Sbjct: 133 VIGAVYLEHGIETARSLVHRLFGRLLAEAPRRGAGLDWKTSLQELTASAGLGVPEYKVVD 192 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207 +GPDH F+ VV ++G +G + Sbjct: 193 TGPDHRKEFSAVVLVNGRDLGRGDGTT 219 >gi|167470281|ref|ZP_02334985.1| ribonuclease III [Yersinia pestis FV-1] Length = 195 Score = 87.3 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 65/196 (33%), Positives = 98/196 (50%), Gaps = 5/196 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+ + + L++++GY F + LL +ALTH S S + ERLEFLGD IL +I+ L+ Sbjct: 1 MNPIVINRLQRKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANELY 57 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F EG++S +LV T +++ARE DL +R+ K SI AD VE Sbjct: 58 RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +LI ++LD I + +++ R + G ++D KT LQE+ + P Y V Sbjct: 118 ALIGGVFLDSDIHTIERLILEWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177 Query: 179 FRSGPDHDPRFTVVVE 194 G HD F Sbjct: 178 QVRGEAHDQEFISTAR 193 >gi|222629185|gb|EEE61317.1| hypothetical protein OsJ_15421 [Oryza sativa Japonica Group] Length = 1632 Score = 87.3 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 52/103 (50%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + LE+ IGY F ++ LL +A H S S Y++ EFLGD +L +I++ L+ Sbjct: 1177 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQKTEFLGDAVLEYVITSYLY 1236 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 + + K G+++ + V ++ + A E + + S+ Sbjct: 1237 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNH 1279 Score = 41.5 bits (95), Expect = 0.088, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPA 201 + A++ L E A + PE+K+ GP H +FT VVVEI G L Sbjct: 1536 YHGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLEC 1595 Query: 202 QGMDC-SKRAAEQVAAAEV---LKREG 224 K+AA++ AA LK+ G Sbjct: 1596 HSDGKLQKKAAQEHAAQGALWCLKQLG 1622 Score = 38.8 bits (88), Expect = 0.64, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 15/115 (13%) Query: 2 SALRYSTLEKRI-GYAFANRSLLEKALTHSSISHSYQESY------------ERLEFLGD 48 +L Y+ +EK I + + + L A+ S + S +RLEFLGD Sbjct: 1258 DSLAYAAVEKSIHKHLIKDSNHLTSAI--SKFEMYVKLSNSEKDLLEEPACPKRLEFLGD 1315 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 +L +I++ L++ + K G+++ + V ++ + A E + + S+ Sbjct: 1316 AVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNH 1370 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 3/130 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + +ALT S ER E LGD L ++ F ++ EG+L+ R + +V+ Sbjct: 995 ILEALTTEKCLERI--SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNS 1052 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 +++ L +IR V + + I Sbjct: 1053 HLYELSIRKKLQVYIRDQQ-FEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNL 1111 Query: 143 WKQRALKSGK 152 R+ Sbjct: 1112 RCTRSHHWLH 1121 >gi|161579129|gb|ABX72052.1| Dicer-1 protein [Tribolium castaneum] Length = 157 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E+ IGY F +RS L +ALTH+S S ++ + Y+RLEFLGD +L LI+ L+ Sbjct: 63 YDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTR 122 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G L+ ++LV+ + +A + R Sbjct: 123 MHSPGALTDLRSALVNNTIFASLAVRNGFHRYFRN 157 >gi|312213955|emb|CBX93957.1| similar to dicer-like protein 1 [Leptosphaeria maculans] Length = 1588 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 76/248 (30%), Gaps = 41/248 (16%) Query: 15 YAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 Y F L+ A TH S ++ + +Y+RLEFLGD +L + L+ + L+ Sbjct: 1291 YHFKYPRLVRSAFTHPSYAYMFEHIPNYQRLEFLGDSLLDMAFIMHLYYKYPDKDPQWLT 1350 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSD------------------------LRKDVC 108 +VS + V +L ++ ++ Sbjct: 1351 EHKTPMVSNKFLGAVCVKLGWHRHLKSNTAILSTQIRDYVLEIDEAEREANGAVDYWVNV 1410 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--------RRDAKTE 160 ADV+E+ +AAL++D + + + + T Sbjct: 1411 HEPPKCLADVIEAYVAALFVDSQFDFSVVQSFFDRHLKPFFADMTLDAYENFASNHPTTR 1470 Query: 161 LQEWAHAKFGVTPEYK---VTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQVA 215 L FG + T P +V I G G R A A Sbjct: 1471 LSRLLSISFGCSDWRMGARETDTVIPGKGKAIAAMVMIHGKVWFHSLGQGG--RYARLRA 1528 Query: 216 AAEVLKRE 223 + L+R Sbjct: 1529 SHAALERL 1536 Score = 43.4 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 12/78 (15%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +L +ALT S +YERLEFLGD L + S +F Sbjct: 1066 PALALEALTKDSENTDEHEEEKINFKSGMGPNYERLEFLGDCFLKMATSLSVFVQQPEEN 1125 Query: 68 EGELSVRFNSLVSAETCS 85 E E VR ++ + Sbjct: 1126 EFEYHVRRMLMLCNQNLM 1143 >gi|313204618|ref|YP_004043275.1| ribonuclease iii [Paludibacter propionicigenes WB4] gi|312443934|gb|ADQ80290.1| ribonuclease III [Paludibacter propionicigenes WB4] Length = 277 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 86/217 (39%), Gaps = 4/217 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 K +G+ + A+ H S+S + S ERLEFLGD +L +++ +L+ + Sbjct: 23 FHKVLGFYPDKIEYYQLAVRHKSVSIPTENGRNLSNERLEFLGDAVLNSVVTDILYRRYK 82 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +EG L+ + +V ++ +++A E+ L ++V+ + + + + + I Sbjct: 83 EEREGFLTNTRSKIVKRDSLNKLALEIGLDKLVKVTKYVNAHTNNNIYGNALEALLGAIY 142 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 Y + K + + K++L EW T ++ Sbjct: 143 LDYGYKKCKKFVEQRLFKSFVNLDKVAENEVNFKSKLIEWCQKNKLETEFILLSETMSGS 202 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + F + I G + SK+ ++Q A+ + Sbjct: 203 NKHVFLSGLMIQGQKICEASGMSKKESQQNASRIAFE 239 >gi|195996181|ref|XP_002107959.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens] gi|190588735|gb|EDV28757.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens] Length = 685 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 4/105 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIST 57 +A LE +GY+F +R LL ALTH++ +H E Y+RLEFLGD IL ++ Sbjct: 426 NAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAILQYIVVR 485 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 ++ ++ K +L + + E+ + + + + +S Sbjct: 486 HCYHANNNYKPADLHDFVEASLQNESLAVMTMVYGIHKYFFYNSP 530 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + KALT + + + + E LEFLGD L +S F + EG+LS + +VS E Sbjct: 246 ILKALTLARANDDF--NLETLEFLGDSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNE 303 Query: 83 TCSQVARELDLASFIRVSSDLRKDVC 108 Q+ ++ L +I + + D+ Sbjct: 304 NLYQIGIKMGLPGYIIGHNVDQNDIW 329 >gi|260831340|ref|XP_002610617.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae] gi|229295984|gb|EEN66627.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae] Length = 1760 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 94/240 (39%), Gaps = 37/240 (15%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y E+ + Y+F +++ + +A TH S ++ + Y+RLEFLGD +L LI+ LF Sbjct: 1509 YQQFEETVQYSFNDKAYMLQAFTHPSYHYNTITDCYQRLEFLGDAVLDYLITNHLFKDPQ 1568 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111 G L+ ++LV+ + +A + D +++ S ++ S Sbjct: 1569 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYLKFVSPELFNIISNFVQFQQEQGEEQGM 1628 Query: 112 -------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 DV ES+ A+YLD G+ + + Y + L Sbjct: 1629 DSQTYINDEGEEESEDIEVPKALGDVFESVAGAIYLDSGMSLETVWRVYYRMMKPLIDKF 1688 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + ++ ++E + S +D + V V + G +G+ + R A+ Sbjct: 1689 SAKVPRSPVRELLEMEPETAKF----SPSERTYDGKVRVTVTVIGKGQFKGVGRNYRIAK 1744 Score = 38.8 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 SL+ +ALT S + + ERLE +GD L I+T L+ + EG+LS + V Sbjct: 1230 PSLILQALTLS--NAGDFFNLERLETIGDSFLKHAITTFLYCTYSRVHEGKLSYMRSRQV 1287 Query: 80 SAETCSQVARELD 92 S ++ + Sbjct: 1288 SNLNLYRLGKRKG 1300 >gi|88703551|ref|ZP_01101267.1| ribonuclease III [Congregibacter litoralis KT71] gi|88702265|gb|EAQ99368.1| ribonuclease III [Congregibacter litoralis KT71] Length = 224 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 74/208 (35%), Positives = 106/208 (50%), Gaps = 8/208 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M A ++ LE++ G N +LL +AL+H S+ + ERLEFLGD +LG ++S L+ Sbjct: 1 MDAQQW--LERQFGCRLNNDALLHQALSHRSVGS---RNNERLEFLGDSVLGYVVSEELY 55 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 F A EG+LS SLV ++VARE+ L +R+ R SI AD E Sbjct: 56 RRFPDADEGQLSRLRVSLVKGSALAEVAREITLGEQLRLGVGERHGGGRRRNSILADSFE 115 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +++ A+ LD GIE + K + R K + R+D KT LQE PEY + Sbjct: 116 AILGAIVLDLGIEACRAAILKVFHARFEGLKLEQARKDPKTRLQELLQGSGRPLPEYVLR 175 Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMD 205 +G DH FTV E+ G A+G+ Sbjct: 176 KATGEDHARIFTVACELADGREVAEGIG 203 >gi|148985143|ref|ZP_01818382.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71] gi|147922588|gb|EDK73706.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71] Length = 153 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 1/147 (0%) Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +V E+ + AR+ FI++ K +I D E+ + AL LD + Sbjct: 1 MIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAFLGALLLDKDVAKVK 60 Query: 137 TFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 F+ + + + D KT LQE V Y+V +GP HD F V V + Sbjct: 61 EFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISETGPAHDKVFDVEVLV 120 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G + QG SK+ AEQ AA +++ Sbjct: 121 EGKSIGQGQGRSKKLAEQEAAKNAVEK 147 >gi|167046026|gb|ABZ10544.1| dicer-like protein C [Placozoa sp. DMJ-2008] Length = 352 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 2/146 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 LEK IGY+F N+ + +ALTHSS H ES ++LEFLGD IL +I+ FN Sbjct: 181 NLERLEKVIGYSFQNKLFMIRALTHSSYHHHNIAIESNQKLEFLGDTILQYIIARHFFNS 240 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 AK +L ++V+ + + + + ++ +I S + I Sbjct: 241 HPDAKPAKLHDFQEAIVNNKCLADIGIAIGVSKYIFQESPDLFRDINQFVKIITCDYMID 300 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL 148 Y D + F ++ + + Sbjct: 301 DEMNYNDRTEALFENFTEEVKIPKPM 326 >gi|157167186|ref|XP_001652212.1| dicer-1 [Aedes aegypti] gi|108877338|gb|EAT41563.1| dicer-1 [Aedes aegypti] Length = 1658 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 Y +E +GY F +R+ L +ALTH+S ++ SY++LEFLGD +L LIS +F Sbjct: 1400 NYRRIESILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQN 1459 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 + G+L+ ++LV+ T + + L + Sbjct: 1460 PTMSPGQLTDLRSALVNNVTLACILVRHGLHLY 1492 Score = 40.3 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 2/107 (1%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + KALT S S + ER E LGD L IS L + EG L+ +VS Sbjct: 1175 IIKALTTKSSSDVF--DLERYELLGDAFLKFSISLYLVKYHKEWHEGFLTAVKGQIVSNR 1232 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 A + L +++ K+ + ++ + ++ Sbjct: 1233 NLVYCAIKYGLPGMLKIHKFDPKNDWQPPLATVPKNIKRTMQSVNHS 1279 >gi|258567596|ref|XP_002584542.1| predicted protein [Uncinocarpus reesii 1704] gi|237905988|gb|EEP80389.1| predicted protein [Uncinocarpus reesii 1704] Length = 1055 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 3/101 (2%) Query: 3 ALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59 + + +++++GY F LL A THSS ++ Y+RLEFLGD +L + L Sbjct: 859 EIDLVAQIKEKLGYQFKYPKLLRSAFTHSSYPSAWAAVPCYQRLEFLGDSLLDMACVEHL 918 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ++ + L+ ++VS + VA +L L +R Sbjct: 919 YHRYPDKDPQWLTEHKMAMVSNKFLGCVAVKLGLHPHLRHF 959 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 12/90 (13%) Query: 21 SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L +ALT H + ++YERLEFLGD L + S LF E Sbjct: 669 ELALEALTKDSDNTEEHRAMQVHFQRGMGKNYERLEFLGDCFLKMATSISLFTMNPDNDE 728 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIR 98 + V+ LV + + A L L FIR Sbjct: 729 YDFHVKRMCLVCNQNLFKAALNLKLYEFIR 758 >gi|332029751|gb|EGI69620.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior] Length = 1257 Score = 86.5 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 TLE +IGY F NR+ L +A TH S ++ E Y+RLEFLGD IL LI+ ++ + + Sbjct: 1002 DTLESKIGYKFKNRAFLLQAFTHPSYTANGITECYQRLEFLGDAILDFLITCYIYENDVN 1061 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLA 94 G+L+ ++LV+ T + ++ L Sbjct: 1062 LSPGDLTDLRSALVNNITFACLSVRHGLH 1090 >gi|118462414|ref|YP_882955.1| ribonuclease III [Mycobacterium avium 104] gi|254776229|ref|ZP_05217745.1| ribonuclease III [Mycobacterium avium subsp. avium ATCC 25291] gi|118163701|gb|ABK64598.1| ribonuclease III [Mycobacterium avium 104] Length = 237 Score = 86.5 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 7/207 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 L +G + LL ALTH S ++ + + ERLEFLGD +LGL I+ L++ Sbjct: 5 QPLLDALGVELPD-ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDALYHRHP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---KDVCSFMTSIQADVVES 121 EG+L+ S+V+ + + VAR+L R + +SI AD +ES Sbjct: 64 DRTEGDLAKLRASVVNTQALADVARKLCDGGLGAHLLLGRGEANTGGADKSSILADGMES 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFR 180 L+ A+YL GI+ A + + + + + A G+ + Sbjct: 124 LLGAIYLQHGIDTAREVILRLFGALLDAAPTLGAGLDWKTSLQELTAARGMGAPSYLVTS 183 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207 +GPDHD FT VV ++ G+ S Sbjct: 184 TGPDHDKEFTAVVVVADTEYGTGVGRS 210 >gi|41409093|ref|NP_961929.1| ribonuclease III [Mycobacterium avium subsp. paratuberculosis K-10] gi|81413486|sp|Q73VL8|RNC_MYCPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|41397452|gb|AAS05312.1| Rnc [Mycobacterium avium subsp. paratuberculosis K-10] Length = 237 Score = 86.5 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 7/207 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 L +G + LL ALTH S ++ + + ERLEFLGD +LGL I+ L++ Sbjct: 5 QPLLDALGVELPD-ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDALYHRHP 63 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---KDVCSFMTSIQADVVES 121 EG+L+ S+V+ + + VAR+L R + +SI AD +ES Sbjct: 64 DRTEGDLAKLRASVVNTQALADVARKLCDGGLGAHLLLGRGEANTGGADKSSILADGMES 123 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFR 180 L+ A+YL GI+ A + + + + + A G+ + Sbjct: 124 LLGAIYLQHGIDTAREVILRLFGALLDAAPTLGAGLDWKTSLQELTAARGMGAPSYLVTS 183 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207 +GPDHD FT VV ++ G+ S Sbjct: 184 TGPDHDKEFTAVVVVADTEYGTGVGRS 210 >gi|316961980|gb|EFV48479.1| endoribonuclease Dicer [Trichinella spiralis] Length = 325 Score = 86.5 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 77/244 (31%), Gaps = 42/244 (17%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFN 61 ++ E +IGY F N++ L +ALTHS + +SYERLEFLGD IL LIS L++ Sbjct: 62 DLNSFEAKIGYRFTNKAYLIQALTHSLYNEVETPVTDSYERLEFLGDAILDYLISRHLYS 121 Query: 62 HFDSAKEGELSVRFNSLVSAE--------------------------TCSQVARELDLAS 95 G LS +LV+ ++ Sbjct: 122 SKRIRSPGLLSDLRAALVNNYFLYFNAELLSVNERFVLAMRGLKESVNFHNELYMMEEEQ 181 Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK----------Q 145 + D+ ES+ A++LD +A + Y Sbjct: 182 DDDEKETSEFAEHVEVPKPLGDIFESVAGAIFLDSHCSLATVWQVYYNMIAEEIGKQRSD 241 Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + + ++ + + G V V ++G G Sbjct: 242 FTSFNKCLCHPPISPVRHLLELEPERVQFNILDREEGNSG---VHVQVVVTGKGSFIGSG 298 Query: 206 CSKR 209 S R Sbjct: 299 KSYR 302 >gi|241954756|ref|XP_002420099.1| RNAse III, putative; double-stranded ribonuclease, putative [Candida dubliniensis CD36] gi|223643440|emb|CAX42319.1| RNAse III, putative [Candida dubliniensis CD36] Length = 611 Score = 86.5 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 22/227 (9%) Query: 17 FANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 + L E+ H S ++ Q ERLEF GD IL L++ ++F F + Sbjct: 242 IKDPKLFERVFVHRSTVNNKQYLEANQLLHSHNERLEFYGDSILNNLVTLIIFKEFPDSA 301 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS + LV+ +T + A + +R + I ADV E+ I AL Sbjct: 302 EGDLSKIRSRLVNNKTLVKFAFQYGFDKKLRTRISENVLK-TGDQKIFADVFEAYIGALA 360 Query: 128 LDGG------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 L+ G E + ++ + D + + + +A T + Sbjct: 361 LEKGLEVEDVKEWLAKLYAPLIHELKIEYIEDPIDREAKSKLYALIGQDDLHPIYNTIQM 420 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA------EVLKR 222 G + +F V I+G +G S + A AA E+LK+ Sbjct: 421 GDGINHKFIVQCTINGEELGRGSANSLKEAGLRAAMAGLNNTEILKK 467 >gi|242033789|ref|XP_002464289.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor] gi|241918143|gb|EER91287.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor] Length = 462 Score = 86.5 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 77/230 (33%), Gaps = 22/230 (9%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFN- 61 + +L+ IGY F + SLL +ALTHSS + ERLEFLGD +L +++ + Sbjct: 217 IDVESLQTIIGYVFDDSSLLIEALTHSSYNTAGITTCNERLEFLGDAVLDYILTDYFYRK 276 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ L+ + V+ + A + L I SS + + + Sbjct: 277 YYPKCTPALLTNLRKASVNNWCYAHAAVKAGLHKHILHSSSKQMIKDLESSGPFSGPSHG 336 Query: 122 LI------------------AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 A G + A + D +EL+E Sbjct: 337 WEPGIGLPEDLADLFEAIAGAIYVDSGNDKEAVWRAMRRLLVPLATPETILLDPVSELKE 396 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAE 212 K P Y T R V+ +G + G ++ AE Sbjct: 397 LCEHKNYPEPWYSPTRDD-AAGVTRVVAKVKAAGREYSDTGEGPNQDVAE 445 >gi|126697134|ref|YP_001092020.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9301] gi|126544177|gb|ABO18419.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9301] Length = 249 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 10/226 (4%) Query: 3 ALRYSTLEKRIGYAFANRSLLE---KALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 ++ + I N S+++ +A HSS +YE+LEF GD +L L S + Sbjct: 21 NIKSKRFSEII--ETQNISVIQDFNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASNFI 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + GE S +VS E +++ R++++ I D S T I Sbjct: 77 EKKYPQLSVGERSELRAQIVSDEWLTKLGRKIEIDKLIIKGPKALGDENSKNTIIGEATE 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKV 177 + A I+ ++D W++ + + ++ +KT LQEW +K P YK+ Sbjct: 137 ALIGAVYKCFNSIQEINLWLDNIWEEDSEQFLKAPYKYKSKTVLQEWCQSKGFDLPVYKI 196 Query: 178 TFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 S + D RF+ + I GL + S + AE AA ++++ Sbjct: 197 MEVSKKNGDLKRFSCDIFIEGLKESSAFGKSHKQAETNAARVLIEK 242 >gi|195584278|ref|XP_002081941.1| Dcr-2 [Drosophila simulans] gi|194193950|gb|EDX07526.1| Dcr-2 [Drosophila simulans] Length = 1666 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1378 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1437 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ T + + L FI ++ + S + Q + Sbjct: 1438 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRV 1497 Query: 123 IAALY 127 ++ Sbjct: 1498 TNYVH 1502 >gi|195335297|ref|XP_002034311.1| GM19969 [Drosophila sechellia] gi|194126281|gb|EDW48324.1| GM19969 [Drosophila sechellia] Length = 1731 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1443 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1502 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ T + + L FI ++ + S + Q + Sbjct: 1503 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRV 1562 Query: 123 IAALY 127 ++ Sbjct: 1563 TNYVH 1567 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 3/38 (7%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +FT + G +K A+ AA L+R I Sbjct: 1694 QFTC---MEKSIKVYGFGSNKNQAKLSAAKHALQRLSI 1728 >gi|80979105|gb|ABB54755.1| Dicer-2 [Drosophila simulans] gi|80979109|gb|ABB54757.1| Dicer-2 [Drosophila simulans] Length = 1714 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ T + + L FI ++ + S + Q + Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRV 1545 Query: 123 IAALY 127 ++ Sbjct: 1546 TNYVH 1550 >gi|80979101|gb|ABB54753.1| Dicer-2 [Drosophila simulans] Length = 1714 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ T + + L FI ++ + S + Q + Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRV 1545 Query: 123 IAALY 127 ++ Sbjct: 1546 TNYVH 1550 >gi|80979111|gb|ABB54758.1| Dicer-2 [Drosophila simulans] Length = 1564 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ T + + L FI ++ + S + Q + Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRV 1545 Query: 123 IAALY 127 ++ Sbjct: 1546 TNYVH 1550 >gi|80979113|gb|ABB54759.1| Dicer-2 [Drosophila simulans] Length = 1565 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ T + + L FI ++ + S + Q + Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRV 1545 Query: 123 IAALY 127 ++ Sbjct: 1546 TNYVH 1550 >gi|80979107|gb|ABB54756.1| Dicer-2 [Drosophila simulans] Length = 1567 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ T + + L FI ++ + S + Q + Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRV 1545 Query: 123 IAALY 127 ++ Sbjct: 1546 TNYVH 1550 >gi|80979115|gb|ABB54760.1| Dicer-2 [Drosophila simulans] Length = 1714 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ T + + L FI ++ + S + Q + Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRV 1545 Query: 123 IAALY 127 ++ Sbjct: 1546 TNYVH 1550 >gi|40215441|gb|AAR82738.1| SD11113p [Drosophila melanogaster] Length = 1640 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 1/124 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1410 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1469 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ T + + L FI + ++ S + Q + Sbjct: 1470 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1529 Query: 123 IAAL 126 + Sbjct: 1530 TNYV 1533 >gi|16215719|dbj|BAB69959.1| double-strand-specific ribonuclease [Drosophila melanogaster] Length = 1722 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 1/124 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1431 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1490 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ T + + L FI + ++ S + Q + Sbjct: 1491 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1550 Query: 123 IAAL 126 + Sbjct: 1551 TNYV 1554 >gi|80979087|gb|ABB54746.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 1/124 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ T + + L FI + ++ S + Q + Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1543 Query: 123 IAAL 126 + Sbjct: 1544 TNYV 1547 Score = 38.8 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 3/121 (2%) Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 + DV+E+LIAA+YLD V + L+ + Q Sbjct: 1593 FNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTRKVPINHIRQ 1652 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H + +FT + G +K A+ AA L++ Sbjct: 1653 LVEHKHAKPVFSSPIVEGETVMVSCQFTC---MEKTIKVYGFGSNKDQAKLSAAKHALQQ 1709 Query: 223 E 223 Sbjct: 1710 L 1710 >gi|156032684|ref|XP_001585179.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980] gi|154699150|gb|EDN98888.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1867 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 74/231 (32%), Gaps = 25/231 (10%) Query: 4 LRYS-TLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLF 60 + + +E + Y F LL A TH + S+ SY+RLEFLGD +L + Sbjct: 1567 IDLARQVETKHPYHFKYPRLLRSASTHPAYPFSYEQIPSYQRLEFLGDALLDM------- 1619 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ + ++ A + D+VE Sbjct: 1620 -------VQKMVAEYACDINEALIQAKADAKRAGKSEDDYAPDYWITVRQPPKCLPDMVE 1672 Query: 121 SLIAALYLDGGIEV------AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 + I A+++D + + Y+K ++ + T L + G Sbjct: 1673 AFIGAIFVDSEYKFEEVEKFFEMHIRWYFKDMSIYDTYANKHPTTFLTNFLQKNMGCEDW 1732 Query: 175 YKVT-FRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V+ G D V + + S R A+ AA + L + Sbjct: 1733 APVSREMPGEDGRKNVVVCGVIVHNKVVSTFQAESMRYAKVGAAKKALAQL 1783 Score = 44.1 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 12/91 (13%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +A+T S +YERLEFLGD L + S L+ + Sbjct: 1378 PDLALEAVTKDSDNSEEHGEEQTNFQRGMGNNYERLEFLGDCFLKMGTSISLYGLNPDSD 1437 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 E V L+ + A +L+L FIR Sbjct: 1438 EFRYHVDRMCLICNKNLFNTALKLELYRFIR 1468 >gi|22026807|ref|NP_523778.2| Dicer-2 [Drosophila melanogaster] gi|21627058|gb|AAF57830.2| Dicer-2 [Drosophila melanogaster] Length = 1722 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 1/124 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1431 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1490 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ T + + L FI + ++ S + Q + Sbjct: 1491 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1550 Query: 123 IAAL 126 + Sbjct: 1551 TNYV 1554 Score = 38.8 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 3/121 (2%) Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 + DV+E+LIAA+YLD V + L+ + Q Sbjct: 1600 FNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTRKVPINHIRQ 1659 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H + +FT + G +K A+ AA L++ Sbjct: 1660 LVEHKHAKPVFSSPIVEGETVMVSCQFTC---MEKTIKVYGFGSNKDQAKLSAAKHALQQ 1716 Query: 223 E 223 Sbjct: 1717 L 1717 >gi|297794785|ref|XP_002865277.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp. lyrata] gi|297311112|gb|EFH41536.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp. lyrata] Length = 786 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 47/270 (17%), Positives = 90/270 (33%), Gaps = 56/270 (20%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M ++ T+EK + Y+F N++LL++A+T ++RLEFLGD +L + ++ + Sbjct: 1 MDSM--ETVEKILNYSFKNKTLLKEAIT-------LSPRFKRLEFLGDSVLEVALANYIH 51 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---------------- 104 + + + K EL + V+ E ++ + +L FI Sbjct: 52 HAYPNLKLQELCDLRTANVNNEKFARATVKHNLYQFIIGEKSSSPSEKIKEFSEAVSKED 111 Query: 105 ----KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--------- 151 + D+VES+ A+Y+D +V + + Sbjct: 112 VPVPYGGLVEAPKVLGDIVESIAGAVYIDVDFDVQRFWEVCCVCLFFITFVFLISMLLIK 171 Query: 152 ------------------KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + + S DH V Sbjct: 172 REEFLQIFRGLLEPIYTLDDLQMQPKPPFLTLFRLADKHGKRIDFRYSKDDHSKENIAEV 231 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + G+ A G S A+ +AA E +++ Sbjct: 232 YLDGIFIASGCTKSLSVAKVLAAEEAVQKL 261 Score = 85.0 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 90/244 (36%), Gaps = 30/244 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + +EK + Y F N++LL++AL +S +++L F+G L L I+ ++ Sbjct: 467 MDSDSVKAVEKILNYVFTNKNLLKEALRQTS------SLFQKLRFVGRAALVLAITNHIY 520 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS----------- 109 + + + EL + +T ++VA + ++ F K + + Sbjct: 521 LRYPNFEPRELELLQRGNTCNKTLARVAVKHNIHQFFIGQFKSEKKIEAFSKVVGKEDDP 580 Query: 110 --------FMTSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKTE 160 T++ +D+VES+ A+Y+D ++ + + R + Sbjct: 581 VPSDGRSERTTNVLSDLVESVAGAVYIDMNFDIKRLWESFRGLFEPLYTLDDLRLRPQPI 640 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEV 219 G + R+ V + A G S+ A+ AA E Sbjct: 641 HTLSCLGDKDGKHFDFRYEEKGSN---RYKAHVYLDDKLIASGKKKNSRDDAKMSAAMEA 697 Query: 220 LKRE 223 +++ Sbjct: 698 VRKL 701 Score = 42.6 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 6/73 (8%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE-----ISGLAPAQGMDC-SKRA 210 K +L + P Y++ GP ++ +F V+ I G +G K+ Sbjct: 365 PKGKLHKICVKNKWPFPIYRIEEERGPKNEQKFVCSVKIEIPNIEGSFHMKGDAKPKKKE 424 Query: 211 AEQVAAAEVLKRE 223 AE +A +++ Sbjct: 425 AENSSAYHMIRAL 437 >gi|282901412|ref|ZP_06309337.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505] gi|281193691|gb|EFA68663.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505] Length = 238 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 8/221 (3%) Query: 5 RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + +L +++G + + LL+ ALTH ++S +YE+LEF+GD ++ L+ + +L+ Sbjct: 11 QLESLIQKLGLSANSPIKWPLLDLALTHPTVSE--SANYEQLEFVGDAVVRLVAAVVLWE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--RKDVCSFMTSIQADVV 119 + G+ + + LVS +++ARE L ++ V+ + + + Sbjct: 69 SYPDCCVGDFAAIRSVLVSDRILARLAREYGLELYLLVAGSATADNVGQESRLADAFEAL 128 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + + ++ + + K LQEW A + V PEY+V Sbjct: 129 LGALYLSTQNLILIRPWLDPHFQELAEQIRLDPAKLNYKAALQEWTQAGYKVLPEYRVVE 188 Query: 180 RSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + P + RF V + QG S +AAEQ AA Sbjct: 189 VNQPQNPHERFLAQVWLHEKILGQGKGRSIKAAEQEAAKVA 229 >gi|57236096|gb|AAW48725.1| dicer-2 [Aedes aegypti] Length = 1658 Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 Y +E +GY F +R+ L +ALTH+S ++ SY++LEFLGD +L LIS +F Sbjct: 1400 NYRRIEGILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQN 1459 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 + G+L+ ++LV+ T + + L + Sbjct: 1460 PTMSPGQLTDLRSALVNNVTLACILVRHGLHLY 1492 Score = 40.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 2/107 (1%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + KALT S S + ER E LGD L IS L + EG L+ +VS Sbjct: 1175 IIKALTTKSSSDVF--DLERYELLGDAFLKFSISLYLVKYHKEWHEGFLTAVKGQIVSNR 1232 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 A + L +++ K+ + ++ + ++ Sbjct: 1233 NLVYCAIKYGLPGMLKIHKFDPKNDWQPPLATVPKNIKRTMQSVNHS 1279 >gi|80979095|gb|ABB54750.1| Dicer-2 [Drosophila melanogaster] Length = 1715 Score = 85.7 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 1/124 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LEK +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1424 INHFYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G L+ ++LV+ T + + L FI + ++ S + Q + Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1543 Query: 123 IAAL 126 + Sbjct: 1544 TNYV 1547 Score = 38.8 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 3/121 (2%) Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 + DV+E+LIAA+YLD V + L+ + Q Sbjct: 1593 FNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTRKVPINHIRQ 1652 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H + +FT + G +K A+ AA L++ Sbjct: 1653 LVEHKHAKPVFSSPIVEGETVMVSCQFTC---MEKTIKVYGFGSNKDQAKLSAAKHALQQ 1709 Query: 223 E 223 Sbjct: 1710 L 1710 >gi|147770295|emb|CAN62473.1| hypothetical protein VITISV_005321 [Vitis vinifera] Length = 287 Score = 85.7 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 91/237 (38%), Gaps = 27/237 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+ +GY+F N+ LLE+A TH+S Q SYERLEF+GD +L LLI+ F + Sbjct: 30 LEGVEQILGYSFTNKRLLEEAYTHASCQK-NQFSYERLEFMGDSVLSLLITKEQFFLYPD 88 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL-----------------RKDVC 108 + G L+ ++ V E ++VA + L F+R + Sbjct: 89 LQPGRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHSNGQ 148 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHA 167 + + ADVVES I A+++D V + + + TEL E Sbjct: 149 IEVPKVLADVVESTIGAVFVDCNCSVDTVXKVFKGLLEPMIVPETLKVHPVTELNERCQK 208 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVLKRE 223 + R G + I +G ++ A AA L Sbjct: 209 RGLKLEFKDSWQRRGD-------IDFYIEDYFAGRGEYPLRKDIALNRAAKAALNNI 258 >gi|282897359|ref|ZP_06305361.1| Ribonuclease III [Raphidiopsis brookii D9] gi|281198011|gb|EFA72905.1| Ribonuclease III [Raphidiopsis brookii D9] Length = 240 Score = 85.7 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 10/222 (4%) Query: 5 RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + +L +++G + + LL+ ALTH ++S +YE+LEF+GD ++ L+ + +L+ Sbjct: 11 QLESLIQKLGLSANSPIKWPLLDLALTHPTVSE--SANYEQLEFVGDAVVRLVAAVVLWE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC----SFMTSIQAD 117 + G+ + + LVS +++ARE DL ++ V+ D + +A Sbjct: 69 SYPDCCVGDFAAIRSVLVSDRILARLAREYDLELYLLVAGSATADNVGQESRLADAFEAL 128 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 + ++ L + +Q L + A + A K Sbjct: 129 LGALYLSTQNLILIRPWLDPHFQELAEQIRLDPARLNYKAALQEWTQAGYKVLPEYRVVE 188 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +S H+ F V + QG S +AAEQ AA Sbjct: 189 VNQSQNAHER-FLAQVWLHEKILGQGKGRSIKAAEQEAAKVA 229 >gi|134084339|emb|CAK48679.1| unnamed protein product [Aspergillus niger] Length = 1531 Score = 85.7 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 86/263 (32%), Gaps = 50/263 (19%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65 +E+++ Y F +LL A TH S ++ + Y+RLEFLGD ++ ++ LF F Sbjct: 1235 KIEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPD 1294 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-------------- 111 L+ ++VS + +A +L L + ++ S + + Sbjct: 1295 RDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGA 1354 Query: 112 --------------------------TSIQADVVESLIAALYLDGGI-----EVAGTFVD 140 D+VE+ + A+++D E Sbjct: 1355 VDYWTVTKDPPKVMTPSALRNTANVDGQCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYI 1414 Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISG 197 K + + F T Y + P D V + Sbjct: 1415 KPFFEDMAIYDTFANKHPTTFLHNRLTNEFGCVNYCLKAGEMPSIDGAPAGVLAAVIVHD 1474 Query: 198 LAPAQGMDCSKRAAEQVAAAEVL 220 + A+G S R A+ A+ + L Sbjct: 1475 VVIAEGTATSGRYAKVKASEKAL 1497 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 13/118 (11%) Query: 11 KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58 + + + L +A T H + + +YERLEFLGD L + S Sbjct: 1023 ESLNFTVK-LDLALEAFTKDSDNTDEHRAQQIHVQRGMGRNYERLEFLGDCFLKMATSIA 1081 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF E + V L+ + A + ++ +IR R + T Sbjct: 1082 LFTQNPDDDEFDYHVNRMCLICNKNLFNAAVDKEIYKYIRSRGFSRLTDAARHTWYPE 1139 >gi|116196272|ref|XP_001223948.1| hypothetical protein CHGG_04734 [Chaetomium globosum CBS 148.51] gi|88180647|gb|EAQ88115.1| hypothetical protein CHGG_04734 [Chaetomium globosum CBS 148.51] Length = 1476 Score = 85.7 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 80/234 (34%), Gaps = 26/234 (11%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E R+GYAF + LL A H + + SY+RLEFLGD +L + LF+ F Sbjct: 1199 ARFEARMGYAFTHPRLLRSAFQHPTYPSVYEKLPSYQRLEFLGDALLDMASVEFLFHRFP 1258 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 A + + A ++R S DVVE+ + Sbjct: 1259 GADPQSKTPCNRHATTPSPGDLPAESFARDFWVRC---------SRPPKCLPDVVEAYVG 1309 Query: 125 ALYLDGGIEVAG------TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 A+++D + A V +++ L + T L + + Sbjct: 1310 AVFVDSRYDFARVRAFFADHVRPFFEDMRLYDAFANKHPVTFLAGIMQGRMRCAEWRLLV 1369 Query: 179 FRSGPD---------HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P P+ V + GL A + S R + AA + ++ Sbjct: 1370 KDLPPVVGAGAGTELETPQVVCAVRVHGLTLAHAVAASGRYGKIAAAKKAIQVL 1423 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 38/116 (32%), Gaps = 17/116 (14%) Query: 1 MSAL--RYSTLE--KRIGYAFANRSLLEKALT--------HS----SISHSYQESYERLE 44 M + LE K + L +A T H S +YERLE Sbjct: 982 MHRIDSNLVALEACKMLNLNVR-PDLALEAFTKDSDNSGEHDAEQISFQSGMGNNYERLE 1040 Query: 45 FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 FLGD L + + +F E E V L+ A E+ L IR Sbjct: 1041 FLGDCFLKMATTISIFTLIPDKAEFEYHVERMLLICNRNLFNNALEVKLEEHIRSM 1096 >gi|160285502|pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of Human Dicer gi|160285503|pdb|2EB1|B Chain B, Crystal Structure Of The C-Terminal Rnase Iii Domain Of Human Dicer gi|160285504|pdb|2EB1|C Chain C, Crystal Structure Of The C-Terminal Rnase Iii Domain Of Human Dicer Length = 200 Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + EK+I Y F N++ L +A TH+S ++ + Y+RLEFLGD IL LI+ L+ Sbjct: 8 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 G L+ ++LV+ + +A + D + + Sbjct: 68 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 101 >gi|323126809|gb|ADX24106.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 151 Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 1/148 (0%) Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +V E+ + +R ++I++ K +I D+ E+ + AL LD G++ Sbjct: 1 MIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVDEVR 60 Query: 137 TFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 F+ + + K + + +D KT LQE +K + +Y+V GP H +F V V + Sbjct: 61 RFLQQVMIPQVEKGNFEKVKDYKTCLQELLQSKGDIAIDYQVISEKGPAHAKQFEVAVFV 120 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + ++G+ SK+ AEQ AA L + Sbjct: 121 NEEVLSKGLGKSKKMAEQDAAKNALVQL 148 >gi|37929016|gb|AAP70345.1| ribonuclease III [Ehrlichia ruminantium] gi|37929023|gb|AAP70347.1| ribonuclease III [Ehrlichia ruminantium] gi|37929030|gb|AAP70349.1| ribonuclease III [Ehrlichia ruminantium] gi|41814830|gb|AAS10486.1| ribonuclease III [Ehrlichia ruminantium] Length = 171 Score = 85.4 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 91/167 (54%) Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +LFN F EG L+ + +LV ++A+ ++L FI +S R + ++ + Sbjct: 1 MLFNIFPYDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGAKNSNNLEN 60 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+YLDGG++ A F+ +WK A +DAKT LQEWA +K P Y + Sbjct: 61 ALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHI 120 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +SGPDH+P FTV V I +K+ AEQ AA+ +L++ Sbjct: 121 INKSGPDHNPCFTVEVRIDSHETLHATGHNKKLAEQKAASLMLEKIN 167 >gi|30350181|gb|AAP31489.1| putative ribonuclease III [Western X phytoplasma] Length = 228 Score = 85.4 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 7/207 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLF 60 + L KR+ N SL ALTHSS +++ + ERLEFLGD ++ +++ L+ Sbjct: 1 MSIKQLFKRLNIKPKNISLFINALTHSSYANENNAKHNNNERLEFLGDSVINFFMASYLY 60 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + EG ++ + V ++ A E+ L +I + +K SI D E Sbjct: 61 -KNNKDDEGVMTKKRAQAVCVDSLLIYAEEIQLKKYIYLGKGEKKRSVHN-YSIVTDAFE 118 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 +L A+YLD G + A + K + YK+ Sbjct: 119 ALFGAIYLDLGFKQAQKTFYQVVLPCLNKIINIIDFKTQ--LQELVQTKKQNITYKIISE 176 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207 G H+ F V + +G + Sbjct: 177 KGLAHEKEFVSEVYLGKEWLGKGNGKT 203 >gi|194755862|ref|XP_001960198.1| GF13246 [Drosophila ananassae] gi|190621496|gb|EDV37020.1| GF13246 [Drosophila ananassae] Length = 1727 Score = 85.4 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + ++ LE+ +GY F +R L +ALTH S ++ Y++LEF+GD IL LIS +F + Sbjct: 1441 INHANLEQNLGYTFKDRGYLLQALTHPSYPTNRITGCYQQLEFIGDAILDFLISGYIFEN 1500 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 G+L+ ++LV+ T + + + F Sbjct: 1501 NTKMTPGQLTDLRSALVNNTTLACICVRHKIHLF 1534 >gi|259485853|tpe|CBF83228.1| TPA: Dicer-like protein 2 [Includes Endoribonuclease dcl2(EC 3.1.26.-);ATP-dependent helicase dcl2(EC 3.6.1.-)] [Source:UniProtKB/Swiss-Prot;Acc:P0C5H7] [Aspergillus nidulans FGSC A4] Length = 1269 Score = 85.0 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62 ++ LE IGY F +++LL +ALTH S + +SY+RLEFLGD +L +LI L+ H Sbjct: 894 IQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAH 953 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDL 93 ++GE++ +++V+ + + + Sbjct: 954 HVECQQGEMTKIKHAIVNGHLLAFLCMQFKW 984 Score = 40.3 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F + + A+T Y+R EF GD +L ++ LF + + EG L+ Sbjct: 724 DIQFQDLRHVITAITMPLAQAPT--DYQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTE 781 Query: 74 RFNSLVSAETCSQVARELDLASFIR 98 ++LV ++ A + L ++I Sbjct: 782 TLHALVQNARLTRAALDQGLDAYII 806 >gi|158706440|sp|P0C5H7|DCL2_EMENI RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 Length = 1429 Score = 85.0 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62 ++ LE IGY F +++LL +ALTH S + +SY+RLEFLGD +L +LI L+ H Sbjct: 1054 IQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAH 1113 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDL 93 ++GE++ +++V+ + + + Sbjct: 1114 HVECQQGEMTKIKHAIVNGHLLAFLCMQFKW 1144 Score = 40.3 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F + + A+T Y+R EF GD +L ++ LF + + EG L+ Sbjct: 884 DIQFQDLRHVITAITMPLAQAPT--DYQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTE 941 Query: 74 RFNSLVSAETCSQVARELDLASFIR 98 ++LV ++ A + L ++I Sbjct: 942 TLHALVQNARLTRAALDQGLDAYII 966 >gi|67525463|ref|XP_660793.1| hypothetical protein AN3189.2 [Aspergillus nidulans FGSC A4] gi|40743766|gb|EAA62953.1| hypothetical protein AN3189.2 [Aspergillus nidulans FGSC A4] Length = 1726 Score = 85.0 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62 ++ LE IGY F +++LL +ALTH S + +SY+RLEFLGD +L +LI L+ H Sbjct: 1351 IQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAH 1410 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDL 93 ++GE++ +++V+ + + + Sbjct: 1411 HVECQQGEMTKIKHAIVNGHLLAFLCMQFKW 1441 Score = 40.3 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F + + A+T Y+R EF GD +L ++ LF + + EG L+ Sbjct: 1181 DIQFQDLRHVITAITMPLAQAPT--DYQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTE 1238 Query: 74 RFNSLVSAETCSQVARELDLASFIR 98 ++LV ++ A + L ++I Sbjct: 1239 TLHALVQNARLTRAALDQGLDAYII 1263 >gi|225012041|ref|ZP_03702478.1| Ribonuclease III [Flavobacteria bacterium MS024-2A] gi|225003596|gb|EEG41569.1| Ribonuclease III [Flavobacteria bacterium MS024-2A] Length = 236 Score = 85.0 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 84/206 (40%), Gaps = 6/206 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61 + L+K++ N+ L +KA THSS++ ++ERLEFLGD +L +++ LFN Sbjct: 8 FIQLQKKLNIRTRNKELYKKAFTHSSVNLKDKEGNTINFERLEFLGDALLSTIVAEYLFN 67 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 AKEGEL+ +VS + + +++ L +SS + + ++ ++ + Sbjct: 68 FHPEAKEGELTKLRAKIVSRSQLNSIGKQMGLFELADISSHHKTFGENIHGNLIESLIGA 127 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 L + + ++ + + + L K E + Sbjct: 128 LFIDKGYNKTKDYVLKYMLDPYID--MDELDNMVLSYKSLLIEWSQKQKQELEIRTENDG 185 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCS 207 G D + +T + + ++ S Sbjct: 186 GLDPNINYTCQIYLGKKLISKARGLS 211 >gi|328716581|ref|XP_003245985.1| PREDICTED: endoribonuclease Dcr-1-like isoform 2 [Acyrthosiphon pisum] Length = 1489 Score = 85.0 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + E+ +GY F +RS L +A+TH+S + + Y+RLEFLGD +L LI+ L+ Sbjct: 1357 FESFEQHLGYHFQDRSYLLQAMTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 1416 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G L+ ++LV+ + +A + + Sbjct: 1417 QHSPGALTDLRSALVNNTIFASLAVRNGFHKYFKH 1451 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 2/98 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 S+L +ALT S+ + + ERLE +GD L I+ L+ D+ EG+LS + V Sbjct: 1124 PSVLLQALTMSNANDGI--NLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQV 1181 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 S ++ + + + D Sbjct: 1182 SNLNLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPH 1219 >gi|190344934|gb|EDK36728.2| hypothetical protein PGUG_00826 [Meyerozyma guilliermondii ATCC 6260] Length = 525 Score = 85.0 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 81/228 (35%), Gaps = 17/228 (7%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L + H S ++S ERLEFLGD IL +++ ++F F +A Sbjct: 170 TIKDPELAARVFVHKSTTNSKSYLAMSELINSHNERLEFLGDSILNNVVTLIIFEQFPTA 229 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS SL++ ++ + ++ + + I AD+ E+ I AL Sbjct: 230 SEGELSRIRASLINNAFLTEFSLAYGFDKKLKSNINEEDLRN-GKQKIYADLFEAYIGAL 288 Query: 127 YLDGGIEVAGTFVDKYWKQR-------ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +D ++ + G + + + ++ Sbjct: 289 IIDRKYDITEIKAWLKKLMKDKLGSIARDMKGIKEVNKDAKAELYSLIGTAALHPQYEVI 348 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 G + +F + ++G G S + A AA L + + T Sbjct: 349 VEGDGSEKQFEIACTMNGEILGVGRAPSHKEAGLRAAMHALTNKPVLT 396 >gi|255953957|ref|XP_002567731.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589442|emb|CAP95586.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1495 Score = 85.0 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 84/244 (34%), Gaps = 34/244 (13%) Query: 11 KRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +++GY F LL A TH S + + Y+RLEFLGD +L ++ LF+ F + Sbjct: 1217 EKVGYDFKYPRLLRSAFTHPSYPLAWAKVPCYQRLEFLGDALLDMVCVEHLFHRFPNRDP 1276 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----------------- 111 L+ ++VS + +A +L L ++ S+ S Sbjct: 1277 QWLTEHKMAMVSNKFLGALAVKLGLHLHLQHFSNPLMIQNSKYAEEIQLAESESNGEVDY 1336 Query: 112 -------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWK-----QRALKSGKFRRDAKT 159 D++E+ + A+++D G + F T Sbjct: 1337 WLSTSDSPKCLPDMLEAYLGAIFVDSGFDFTVIEAFFQRHILPFFHDMSIYDTFANRHPT 1396 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHD---PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +Y + P + PR V + G + A + S R A+ A+ Sbjct: 1397 TFLHSQMTHNYRCADYCLKSAEVPAVEGETPRVFAAVMVHGQSIASAVASSSRYAKVRAS 1456 Query: 217 AEVL 220 L Sbjct: 1457 TRAL 1460 Score = 46.1 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 12/98 (12%) Query: 21 SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +A T H S + ++YERLE LGD +L + S LF E Sbjct: 1017 EYALEAFTKDSDNTEEHRSLQIHVQRGMGKNYERLELLGDSVLKMATSISLFAQNPDDDE 1076 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 + V L+ + + A EL L +IR R Sbjct: 1077 YDYHVNRMCLICNKNLFKNAIELKLYEYIRSRGFSRHM 1114 >gi|332519389|ref|ZP_08395856.1| ribonuclease III [Lacinutrix algicola 5H-3-7-4] gi|332045237|gb|EGI81430.1| ribonuclease III [Lacinutrix algicola 5H-3-7-4] Length = 247 Score = 85.0 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 6/200 (3%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSA 66 + IGY + A TH S++ + +YERLEFLGD +L +I+ L+ S Sbjct: 24 QIIGYKPKTIKHFKTAFTHRSMNIRNSKGNIVNYERLEFLGDAMLSAVIAHHLYEEVPSG 83 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ + +VS E +++ R+L L + + + + ++ +V ++ Sbjct: 84 DEGYLTKMRSKVVSREHLNELGRDLKLINLVESKIPKGQFGDNIHGNLFESLVGAIYLDG 143 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + V + GK ++ T +Y V +G D+ Sbjct: 144 GFKACEKFIYKRVITPFVDIEQLEGKVISYKSLLIEWCQKE--KKTFDYNVYEDTGNDNI 201 Query: 187 PRFTVVVEISGLAPAQGMDC 206 F+V + I ++G Sbjct: 202 RHFSVKLSIDNKIVSKGRAT 221 >gi|146423032|ref|XP_001487449.1| hypothetical protein PGUG_00826 [Meyerozyma guilliermondii ATCC 6260] Length = 525 Score = 84.6 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 80/228 (35%), Gaps = 17/228 (7%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L + H S ++S ERLEFLGD IL +++ ++F F +A Sbjct: 170 TIKDPELAARVFVHKSTTNSKSYLAMSELINSHNERLEFLGDSILNNVVTLIIFEQFPTA 229 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS L++ ++ + ++ + + I AD+ E+ I AL Sbjct: 230 SEGELSRIRALLINNAFLTEFSLAYGFDKKLKSNINEEDLRN-GKQKIYADLFEAYIGAL 288 Query: 127 YLDGGIEVAGTFVDKYWKQR-------ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +D ++ + G + + + ++ Sbjct: 289 IIDRKYDITEIKAWLKKLMKDKLGSIARDMKGIKEVNKDAKAELYSLIGTAALHPQYEVI 348 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 G + +F + ++G G S + A AA L + + T Sbjct: 349 VEGDGSEKQFEIACTMNGEILGVGRAPSHKEAGLRAAMHALTNKPVLT 396 >gi|209525933|ref|ZP_03274467.1| Ribonuclease III [Arthrospira maxima CS-328] gi|209493610|gb|EDZ93931.1| Ribonuclease III [Arthrospira maxima CS-328] Length = 395 Score = 84.6 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 21/212 (9%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61 S L K+I F N LL ALTHSS + + + E LEFLGD +L + L+N Sbjct: 166 LSKLLKKI--PFQNVDLLNHALTHSSYLYEHPKEVKRDNELLEFLGDSVLNFISGEYLYN 223 Query: 62 HFDS-AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + S EG+L+ ++LV + ++ A +L L +IR+ + S+ ++ E Sbjct: 224 KYKSVRNEGDLTKLRSALVENKQLAKFAEKLALQQYIRLG-----KGAALNPSLLSNTFE 278 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL---------QEWAHAKFGV 171 ++I A +LD G++ F+ + + + ++ + + Sbjct: 279 AMIGAYFLDSGMKKVQEFLQPLFDSVIAEITSLSQGNSGKVAADSKNRLQEWVQKNIGPI 338 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 TPEY+ G DH +FTV V + G +G Sbjct: 339 TPEYETIKEEGADHKKQFTVQVMVQGKVYGEG 370 >gi|80979103|gb|ABB54754.1| Dicer-2 [Drosophila simulans] Length = 1537 Score = 84.6 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R L +ALTH S ++ SY+ LEF+GD IL LIS +F + Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 G L+ ++LV+ T + + L F Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1519 >gi|195997771|ref|XP_002108754.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens] gi|190589530|gb|EDV29552.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens] Length = 1018 Score = 84.6 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 2/118 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 LEK IGY+F N+ + +ALTHSS H ES ++LEFLGD IL +I+ FN Sbjct: 813 NLERLEKVIGYSFQNKLFMIRALTHSSYHHHDIAIESNQKLEFLGDTILQYIIARHFFNS 872 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 AK +L ++V+ + + + + ++ ++ S I Sbjct: 873 HPDAKPAKLHDFQEAIVNNKCLAVIGIAIGVSKYVFQESPDLFRDIDQFAKIITCDYM 930 Score = 38.0 bits (86), Expect = 0.94, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +ALT S ERLEFLGD L +I+ LF EG+L+ +V + Sbjct: 627 LLEALT--LAEAEDDISLERLEFLGDSFLKFIIAANLFISHPKYHEGQLTNELTKIVRND 684 Query: 83 TCSQVARELDLASFIR 98 ++ + + +I Sbjct: 685 NLLKLGKSTPICEYII 700 >gi|167046024|gb|ABZ10543.1| dicer-like protein C [Trichoplax adhaerens] Length = 358 Score = 84.6 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 2/118 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 LEK IGY+F N+ + +ALTHSS H ES ++LEFLGD IL +I+ FN Sbjct: 187 NLERLEKVIGYSFQNKLFMIRALTHSSYHHHDIAIESNQKLEFLGDTILQYIIARHFFNS 246 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 AK +L ++V+ + + + + ++ ++ S I Sbjct: 247 HPDAKPAKLHDFQEAIVNNKCLAVIGIAIGVSKYVFQESPDLFRDIDQFAKIITCDYM 304 Score = 38.0 bits (86), Expect = 0.94, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +ALT S ERLEFLGD L +I+ LF EG+L+ +V + Sbjct: 1 LLEALT--LAEAEDDISLERLEFLGDSFLKFIIAANLFISHPKYHEGQLTNELTKIVRND 58 Query: 83 TCSQVARELDLASFIR 98 ++ + + +I Sbjct: 59 NLLKLGKSTPICEYII 74 >gi|123967024|ref|YP_001012105.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9515] gi|123201390|gb|ABM72998.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9515] Length = 249 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 5/204 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 +ALTHSS +YE+LEF GD +L L S + + + G S + LVS E Sbjct: 42 FNEALTHSSADKIV--NYEKLEFFGDAVLRLSASDFIERKYKNMSVGNRSELRSQLVSDE 99 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 +++ +++ + I D S T I + A I ++D + Sbjct: 100 WLTELGKKIFIEKVIVKGPKAIGDENSKDTIIAETSEALIGAIYKCFNSIHEVNIWLDNF 159 Query: 143 WKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLA 199 W++ A + +AK+ LQEW P YK+ S DP RF+ + ++G Sbjct: 160 WEKDAELYLKAPHKYNAKSALQEWCQKHGFDLPIYKIYEVSSSHGDPKRFSCDIYLNGSK 219 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 A S + AE+ AA ++++ Sbjct: 220 EASSFGNSHKKAEKNAATILIEKI 243 >gi|294463153|gb|ADE77113.1| unknown [Picea sitchensis] Length = 173 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S LE + Y F ++SLL++A+THSS ++ ESYE+LEF+GD +LG L++ L+ + Sbjct: 19 LSELEDILKYKFKSKSLLKEAITHSS--NNNTESYEKLEFVGDSVLGYLVTKHLYCAYPK 76 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +G L++ + V E ++V + ++ +++ + + D +S Sbjct: 77 LYQGTLTLLRSRNVDTEKFARVCVKHKFHQYLLLNAPALQQIIEDFVKDIEDESKSFRCG 136 >gi|238881386|gb|EEQ45024.1| conserved hypothetical protein [Candida albicans WO-1] Length = 611 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 22/227 (9%) Query: 17 FANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 N L E+ H S ++ Q ERLEF GD IL L + ++F F + Sbjct: 242 INNPKLFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDST 301 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS + LVS +T ++A + +R + I ADV E+ I AL Sbjct: 302 EGDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDVLK-TGDKKIFADVFEAYIGALA 360 Query: 128 LDGGI------EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 ++ G E + ++ + D + + + + T + Sbjct: 361 MERGFDLEDVKEWLAKVYAPLIHELKIEYIEEPIDREAKSKLYGLIGQDDLHPVYNTLQM 420 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA------EVLKR 222 G +F V I+G +G + + A AA EVLK+ Sbjct: 421 GDGIHNKFIVQCTINGEELGRGTANNLKEAGLRAAMAGLNNNEVLKK 467 Score = 38.4 bits (87), Expect = 0.81, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 18/34 (52%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F VV+ + G+ + D SK+ A AA +L+ Sbjct: 560 FKVVLCVRGITICEATDPSKKKAMARAAQTLLEN 593 >gi|37929739|gb|AAP70361.1| ribonuclease III [Ehrlichia ruminantium] Length = 156 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 86/155 (55%) Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + +LV +VA+ ++L +FI +S R + +S + +E+LI A+YLDGG+ Sbjct: 1 KKKTALVCGTKLVEVAQSINLGTFIIMSDGERTCGGANNSSNLENALEALIGAIYLDGGL 60 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 + A F+ +WK A +DAKT LQEWA +K + P Y + +SGPDH+P FTV Sbjct: 61 KAAKNFIFLFWKNSAKHMKVPPQDAKTILQEWAQSKGLLAPSYHIVNKSGPDHNPIFTVE 120 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 V + Q +K+ AEQ AA+ +L++ T Sbjct: 121 VRMHSYETLQATGNNKKIAEQKAASLMLEKINYKT 155 >gi|68477301|ref|XP_717277.1| probable ribonuclease III [Candida albicans SC5314] gi|46438981|gb|EAK98304.1| probable ribonuclease III [Candida albicans SC5314] Length = 611 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 22/227 (9%) Query: 17 FANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 + L E+ H S ++ Q ERLEF GD IL L + ++F F + Sbjct: 242 INDPKLFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDST 301 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS + LVS +T ++A + +R + I ADV E+ I AL Sbjct: 302 EGDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDVLK-TGDKKIFADVFEAYIGALA 360 Query: 128 LDGGI------EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 ++ G E + ++ + D + + + + T + Sbjct: 361 MERGFDLEDVKEWLAKVYAPLIHELKIEYIEEPIDREAKSKLYGLIGQDDLHPVYNTLQM 420 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA------EVLKR 222 G +F V I+G +G + + A AA EVLK+ Sbjct: 421 GDGIHNKFIVQCTINGEELGRGTANNLKEAGLRAAMAGLNNNEVLKK 467 Score = 38.4 bits (87), Expect = 0.81, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 18/34 (52%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F VV+ + G+ + D SK+ A AA +L+ Sbjct: 560 FKVVLCVRGITICEATDPSKKKAMARAAQTLLEN 593 >gi|68477460|ref|XP_717201.1| probable ribonuclease III [Candida albicans SC5314] gi|46438903|gb|EAK98227.1| probable ribonuclease III [Candida albicans SC5314] Length = 611 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 22/227 (9%) Query: 17 FANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 + L E+ H S ++ Q ERLEF GD IL L + ++F F + Sbjct: 242 INDPKLFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDST 301 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+LS + LVS +T ++A + +R + I ADV E+ I AL Sbjct: 302 EGDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDVLK-TGDKKIFADVFEAYIGALA 360 Query: 128 LDGGI------EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 ++ G E + ++ + D + + + + T + Sbjct: 361 MERGFDLEDVKEWLAKVYAPLIHELKIEYIEEPIDREAKSKLYGLIGQDDLHPVYNTLQM 420 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA------EVLKR 222 G +F V I+G +G + + A AA EVLK+ Sbjct: 421 GDGIHNKFIVQCTINGEELGRGTANNLKEAGLRAAMAGLNNNEVLKK 467 >gi|194880776|ref|XP_001974538.1| GG21041 [Drosophila erecta] gi|190657725|gb|EDV54938.1| GG21041 [Drosophila erecta] Length = 1729 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 1/121 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1439 INHYHLENNLGYTFKDRGYLLQALTHPSYPTNRITGCYQELEFIGDAILDFLISVYIFEN 1498 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + G L+ ++LV+ T + + L FI + + + S Q + Sbjct: 1499 NTNMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAMLAESISKFVHFQESQRHRV 1558 Query: 123 I 123 Sbjct: 1559 T 1559 >gi|170076696|ref|YP_001733334.1| ribonuclease III [Synechococcus sp. PCC 7002] gi|169884365|gb|ACA98078.1| ribonuclease III [Synechococcus sp. PCC 7002] Length = 239 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 6/208 (2%) Query: 6 YSTLEKRIG---YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 L R+G Y LL+ ALTH SIS ++YE+LEF+GD ++ L S +L+ Sbjct: 10 LRRLIDRLGLPDYHGMRWDLLDLALTHPSIS--PDKNYEQLEFIGDAVVRLAASEVLYAE 67 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + + GE + + LVS T ++ A +L ++ + + + + Sbjct: 68 YPAEPVGEFAAIRSILVSDRTLAEFAHRYNLKKYLSYHGHYHGAGEISLLADAFEAMLGA 127 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + D + K +K R + K LQ W+ ++ P Y+VT Sbjct: 128 LFLTTNDLSLVHPWLDEHLRHKAAEIKQDPARENYKDALQTWSQGEYQKLPTYQVTENPE 187 Query: 183 PDHDP-RFTVVVEISGLAPAQGMDCSKR 209 H+ RF V++ +G+ SK+ Sbjct: 188 FRHEEERFLAEVKLGDTLLGKGVGRSKK 215 >gi|18158946|pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution gi|18158947|pdb|1JFZ|B Chain B, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution gi|18158948|pdb|1JFZ|C Chain C, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution gi|18158949|pdb|1JFZ|D Chain D, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution gi|47168733|pdb|1RC5|A Chain A, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.30 Angstrom Resolution gi|47168734|pdb|1RC5|B Chain B, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.30 Angstrom Resolution gi|47168735|pdb|1RC5|C Chain C, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.30 Angstrom Resolution gi|47168736|pdb|1RC5|D Chain D, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.30 Angstrom Resolution Length = 154 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 8/137 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LEK++GY F ++SLLEKALTH S S +E YE LEFLGD ++ I LL + + Sbjct: 5 LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 62 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG LS L+S E + +A++L+L FIR+ +I DV E+L AA Sbjct: 63 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFEALWAA 116 Query: 126 LYLDGGIEVAGTFVDKY 142 +Y+D G + T Y Sbjct: 117 VYIDSGRDANFTRELFY 133 >gi|18158935|pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.15 Angstrom Resolution gi|18158936|pdb|1I4S|B Chain B, Crystal Structure Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.15 Angstrom Resolution Length = 147 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 8/137 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LEK++GY F ++SLLEKALTH S S +E YE LEFLGD ++ I LL + + Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 +EG LS L+S E + +A++L+L FIR+ +I DV E+L AA Sbjct: 62 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFEALWAA 115 Query: 126 LYLDGGIEVAGTFVDKY 142 +Y+D G + T Y Sbjct: 116 VYIDSGRDANFTRELFY 132 >gi|126134051|ref|XP_001383550.1| hypothetical protein PICST_30953 [Scheffersomyces stipitis CBS 6054] gi|126095699|gb|ABN65521.1| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 566 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 87/220 (39%), Gaps = 15/220 (6%) Query: 17 FANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +++L E+ H S+ + ERLEFLGD +L L++ ++++ F SA Sbjct: 208 IKDQTLYERVFVHKSVVNGKTYLDQNDLINSHNERLEFLGDSVLNNLVTLIIYDKFPSAS 267 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EG+L+ + L+ T +Q + E ++ +D + + AD+ E+ I AL Sbjct: 268 EGKLTKMRSQLIDNHTLTQFSFEYGFDKRLKTKTDEEILK-TGDQKVYADIFEAYIGALS 326 Query: 128 LDGG---IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 ++ G E+ Y + F +++ + + T + + Sbjct: 327 VERGLDLREIKDWLEKLYAPKLEAFKVNFLQESVNKEAKSELYSIVGTASSHPLYVVVEE 386 Query: 185 HDPR--FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + F V + + S++ A AA + LK Sbjct: 387 GNGSHDFVVECRMGNDVLGRAKAPSQKEAGLRAAMDALKN 426 >gi|242059623|ref|XP_002458957.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor] gi|241930932|gb|EES04077.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor] Length = 1651 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 83/236 (35%), Gaps = 21/236 (8%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE ++GY F + LL +ALTH S Y+RLEFLGD +L +LI+ LF Sbjct: 1245 LEAKLGYTFQVKGLLIEALTHPSQQESGATYCYQRLEFLGDAVLDILITRHLFLSHKDTD 1304 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EGEL+ ++ V+ E +QVA + +L F++ SS +D + + + L Sbjct: 1305 EGELTDLRSASVNNENFAQVAVKHNLHQFLQHSSGFLQDQITEYVNSLEGSSMDRTSLLS 1364 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE-----LQEWAHAKFGVTPEYKVTFRSG 182 A+ L + Sbjct: 1365 SGPSRGPKVLGDIVESIAGAILIDSKLDLDLVWRVFKPLLSPIVTPENLELPPFRELNEW 1424 Query: 183 PDHDPRFT-VVVEISGLAPA--------------QGMDCSKRAAEQVAAAEVLKRE 223 D + F + E G QG +K A+ AA+ +L+ Sbjct: 1425 CDKNGYFIGIKCENRGDKTTAILSLQLKDLLLVRQGCGKNKIDAKAHAASLLLRDL 1480 >gi|313236326|emb|CBY11646.1| unnamed protein product [Oikopleura dioica] Length = 1519 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 2/114 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHF- 63 Y EK+IGY F N+ L ++LTH+S ++ Y+RLEFLGD +L LI+ LF+H Sbjct: 1249 YGEFEKKIGYTFKNKGYLLQSLTHASYQYNQVTNCYQRLEFLGDAVLDFLITRHLFDHPT 1308 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 GEL+ +LV+ + +A + D ++ + +V Sbjct: 1309 KRFSPGELTDLRAALVNNNIFAALAVKFDFHKYLYALTPDLHNVIRDYVLYCQT 1362 >gi|188593364|emb|CAO78751.1| Oikopleura cytoplasmic RNAse III enzyme Dicer [Oikopleura dioica] Length = 1814 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 2/114 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHF- 63 Y EK+IGY F N+ L ++LTH+S ++ Y+RLEFLGD +L LI+ LF+H Sbjct: 1544 YGEFEKKIGYTFKNKGYLLQSLTHASYQYNQVTNCYQRLEFLGDAVLDFLITRHLFDHPT 1603 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 GEL+ +LV+ + +A + D ++ + +V Sbjct: 1604 KRFSPGELTDLRAALVNNNIFAALAVKFDFHKYLYALTPDLHNVIRDYVLYCQT 1657 >gi|168027292|ref|XP_001766164.1| dsRNA-specific nuclease dicer and related ribonuclease [Physcomitrella patens subsp. patens] gi|162682596|gb|EDQ69013.1| dsRNA-specific nuclease dicer and related ribonuclease [Physcomitrella patens subsp. patens] Length = 1460 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 1/113 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 EKRIGY F N+ L +ALTH S + Y+RLEFLGD +L L++ LF Sbjct: 1223 DLKAFEKRIGYTFKNKYLPLEALTHFSNMVGDQIRCYQRLEFLGDAVLDFLLTRHLFTSH 1282 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ G L+ + V+ E ++VA + L ++R S Sbjct: 1283 PTSTPGLLTSLRTASVNNERFARVAVKHRLHCYLRHGSGRLLHQIEEFVKSFE 1335 >gi|291572035|dbj|BAI94307.1| ribonuclease III [Arthrospira platensis NIES-39] Length = 246 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 7/210 (3%) Query: 5 RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +R+G + ++ LL+ ALTH S+S Q++YE+LEF+GD ++ L S LLF Sbjct: 15 QLEKLIERLGLSPQHKIAWQLLDLALTHPSVSS--QDNYEQLEFVGDSVVRLAASELLFE 72 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--LRKDVCSFMTSIQADVV 119 + +A GE + + LVS ++++ L ++ V + + + V Sbjct: 73 TYPNAPVGEFAAVRSILVSDRILAEISESYGLGRYLLVGGSATRDRLGEESRLADCFEAV 132 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + + + + + R++ K LQEW + + + P+YKV Sbjct: 133 LAALYLSTNTLELIRPWLDPHLLERATEIFNDPARQNYKAALQEWTQSCYKILPQYKVNE 192 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + RFT V + G + + Sbjct: 193 TGYAGDEGRFTASVWLRDEQLGTGTGKTIK 222 >gi|88808139|ref|ZP_01123650.1| putative ribonuclease III [Synechococcus sp. WH 7805] gi|88788178|gb|EAR19334.1| putative ribonuclease III [Synechococcus sp. WH 7805] Length = 269 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 78/206 (37%), Gaps = 8/206 (3%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +ALTH+S +E+LEFLGD +L L S + + GE S LVS Sbjct: 61 LNEALTHTS--SGLHPHHEQLEFLGDAVLRLAASEFIAVAYPQMPVGERSSLRAQLVSDR 118 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTFV 139 +Q+ + + + R+ + + + + Sbjct: 119 WLTQLGEAITIEEWWRI--GPKASGDPTAAATIRAELSEALIGAMYRIAGLQAVQTWLTP 176 Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGL 198 A+ + R ++K+ LQEW+ + P Y + S DP RF V + Sbjct: 177 HWQRSAEAVLADPHRGNSKSALQEWSQGRGLGLPRYACSEVSQRHGDPKRFQASVTLPPD 236 Query: 199 APAQGMDCSKRAAEQVAAAEVLKREG 224 A G S+R AEQ AA ++ + Sbjct: 237 LAADGWGGSRREAEQQAAEALMAQLK 262 >gi|146149942|gb|ABQ02405.1| dicer [Schistosoma mansoni] Length = 2641 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 19/113 (16%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH-------------------SYQESYERLEF 45 R+ LE + Y F + SLL +A TH S + + Y+RLEF Sbjct: 2194 RFDELESSLNYTFKDPSLLIQAFTHPSYHQLRVLSTSNNLSDQSNLMFSTDLDCYQRLEF 2253 Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 LGD +L +I+ L+ G L+ ++LV+ + +A + L + R Sbjct: 2254 LGDAVLDYVITRFLYEDSKQHSPGVLTDLRSALVNNNIFAALAVRIGLHKYFR 2306 Score = 37.6 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 23/196 (11%), Positives = 52/196 (26%), Gaps = 10/196 (5%) Query: 29 HSSISHSYQESYERLEFLGDRI-LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87 H+SI + +E E D L L + S + + + S + Sbjct: 2433 HASILNHAKEC-ESKWQEKDTQELTGLFVQNSSENQSSKPQHQTYEQHLSKSGKSNNANN 2491 Query: 88 ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 + ++ ++ I + ++ + + Sbjct: 2492 TIPTNTGHLTTNRLSDDVEIPKALSDIFESLAGAIFLDSNFSLDTVWQIFYPIMKERIER 2551 Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + + + L+ V D R +V + G G+ + Sbjct: 2552 YTACIPKSPVRQLLELEPEGTKFERARRMV--------DGRISVCAHVLGKGRFYGVGRN 2603 Query: 208 KRAAEQVAAAEVLKRE 223 R A+ +AA L+ Sbjct: 2604 YRLAKSLAAKRALRVL 2619 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 + + +ALT S S+ + + ER+E +GD L +++ L+ + A EG+LS + +V Sbjct: 1944 PTTILQALT-MSCSNDFI-NLERMETIGDSFLKFVVTVHLYLTYPEAHEGKLSHLRSRIV 2001 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ + DL + + + Sbjct: 2002 CNSNLYRLGKAKDLQNRMIGCKFEPHENW 2030 >gi|37928957|gb|AAP70337.1| ribonuclease III [Ehrlichia ruminantium] gi|37928988|gb|AAP70339.1| ribonuclease III [Ehrlichia ruminantium] gi|37929002|gb|AAP70341.1| ribonuclease III [Ehrlichia ruminantium] gi|37929010|gb|AAP70343.1| ribonuclease III [Ehrlichia ruminantium] Length = 171 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 91/167 (54%) Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +LFN F EG L+ + +LV ++A+ ++L FI +S R + ++ + Sbjct: 1 MLFNIFPYDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLEN 60 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+YLDGG++ A F+ +WK A +DAKT LQEWA +K P Y + Sbjct: 61 ALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHI 120 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +SGPDH+P FTV V I+ +K+ AEQ AA+ +L + Sbjct: 121 INKSGPDHNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAKIN 167 >gi|189205613|ref|XP_001939141.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187975234|gb|EDU41860.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1572 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 75/253 (29%), Gaps = 37/253 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E + Y F LL A H S + +Y+RLEFLGD +L + T L+ + Sbjct: 1283 KIEAKHPYHFKYPRLLRSAFAHPSYPYIYENIPNYQRLEFLGDSLLDMAFITHLYYKYPD 1342 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-------------- 111 L+ +VS + V +L +I+ ++ + Sbjct: 1343 KDPQWLTEHKTPMVSNKFLGAVCVKLGWHVYIKQNTAILTSQIRDYVLEAQEAEREASSA 1402 Query: 112 ----------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-------- 153 ADV+E+ AA+++D + + + Sbjct: 1403 VDYWVTISEPPKCLADVIEAYTAAIFVDAEFDFSVVQDFFNMHLKPFFEDMTLEAYENFA 1462 Query: 154 RRDAKTELQEWAHAKFGVTPEYK---VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 T L FG P ++ I G + S R Sbjct: 1463 SNHPTTRLSRILSINFGCNDWRMGALEMETLIPGKGKAIAAMIMIHGKVHFYSLGQSGRY 1522 Query: 211 AEQVAAAEVLKRE 223 A + L++ Sbjct: 1523 ARVRVSHAALEKL 1535 Score = 43.4 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 12/76 (15%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +L +ALT S +YERLEFLGD L + S +F Sbjct: 1065 PALALEALTKDSENSEEHGEEKINFKSGMGPNYERLEFLGDCFLKMATSLSVFVQQPDEN 1124 Query: 68 EGELSVRFNSLVSAET 83 E E VR ++ + Sbjct: 1125 EFEFHVRRMEMLCNKN 1140 >gi|120437705|ref|YP_863391.1| ribonuclease III [Gramella forsetii KT0803] gi|117579855|emb|CAL68324.1| ribonuclease III [Gramella forsetii KT0803] Length = 243 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 80/205 (39%), Gaps = 6/205 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61 ++ L + +G+ + +KA TH S++ ++ER+EFLGD +L ++++ LF Sbjct: 19 FNILTQILGFKPKSILHYKKAFTHRSLNRRDEDGNAINFERMEFLGDAMLSAVVASHLFK 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG L+ + +VS + +++ ++L L ++ + + + ++ +V + Sbjct: 79 AVPGGNEGYLTKMRSKVVSRKHLNELGKDLGLIEHVQTNIPKDQFGVNIHGNLFEALVGA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + V + GK ++ ++ V + Sbjct: 139 IYLDRGYKHCKRFIYERVINPYVDIEQLEGKVISYKSLVIEWCQKE--KKEFDFNVYEDT 196 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDC 206 G D F V + I G A+ Sbjct: 197 GNDELKHFAVKLRIGGRVVAKARAT 221 >gi|121807817|sp|Q2VF19|DCL1_CRYPA RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease DCL-1; Includes: RecName: Full=ATP-dependent helicase DCL-1 gi|77632774|gb|ABB00356.1| dicer-like protein 1 [Cryphonectria parasitica] Length = 1548 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 70/268 (26%), Gaps = 51/268 (19%) Query: 7 STLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + GY F + +L A H S Y+RLEFLGD + + LF+ Sbjct: 1249 QKIHEATGYQFKHPRVLRSAFRHPSRPYVFDKVPHYQRLEFLGDALFDMACVDYLFHIAP 1308 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102 L+ ++VS + +A L FI Sbjct: 1309 DEGPQWLTEHKMAMVSNQFLGCLAVSLGFHKFILHHHASIGSQIHEYVTEITEARRAAED 1368 Query: 103 --------------LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK---- 144 DV+E+ + A+++D + + + Sbjct: 1369 AAEAAGKPRSAYSRDYWVEAPQPPKCIPDVLEAYVGAIFVDSKYDYSVVQQFFHAHVLPF 1428 Query: 145 ---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD------HDPRFTVVVEI 195 R + + Q D + + + Sbjct: 1429 FASMRMYDTFANKHPVTFFTQYVFETFGCHAYGLHAEEMPVKDDTGLVTGKTQVVAGILL 1488 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G + S R A+ AA + L + Sbjct: 1489 HGQVVEGAVRDSGRYAKIAAARKALDKL 1516 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 19/112 (16%) Query: 19 NRSLLEKALTHSS-------------------ISHSYQESYERLEFLGDRILGLLISTLL 59 + L +ALT S +YERLE LGD L + + + Sbjct: 1043 HPDLALEALTKDSDNQGEDERMDSIQAFEPVNFQPGMGANYERLELLGDSFLKMATTIAV 1102 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 F + E + ++ + VA+ DL + S + + Sbjct: 1103 FTLIPNKDEFDYHCERMVMICNQNLFGVAKSDDLKLHEYIRSKSFERGTWYP 1154 >gi|271969197|ref|YP_003343393.1| ribonuclease III [Streptosporangium roseum DSM 43021] gi|270512372|gb|ACZ90650.1| Ribonuclease III [Streptosporangium roseum DSM 43021] Length = 243 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 4/206 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ + + ++LE+A+TH S ++ + ERLEFLGD +LGL+++ L+ + Sbjct: 15 DELERVLSVRL-DVAILERAMTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRNHP 73 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 EG+L+ ++V+ + VAR L L F+R+ +SI AD +E+LI Sbjct: 74 DLPEGQLAKLRAAVVNMRALADVARTLGLGRFLRLGRGEEGTGGRDKSSILADTLEALIG 133 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGP 183 ++Y++ G++ A V + +S + A + SGP Sbjct: 134 SVYVNRGLDEAFRVVHLLFDPLITRSASLGAGLDWKTSLQELTASEALGVPEYHVEESGP 193 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209 DH FT VV + G G SK+ Sbjct: 194 DHAKSFTAVVLLGGEEYGSGSGRSKK 219 >gi|291000766|ref|XP_002682950.1| hypothetical protein NAEGRDRAFT_62031 [Naegleria gruberi] gi|284096578|gb|EFC50206.1| hypothetical protein NAEGRDRAFT_62031 [Naegleria gruberi] Length = 1386 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 88/268 (32%), Gaps = 49/268 (18%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG---LLISTLL 59 + L +++ + F N LL +A H S + +YERLEFLGD +LG Sbjct: 1103 KIDLYKLTEKLNFQFENSGLLLEAFIHPSYN--GVFNYERLEFLGDSVLGLIVTSKIFEK 1160 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL------RKDVCSFMTS 113 F+ S G +S +V + + + E L ++I S + Sbjct: 1161 FHKNSSFSLGMMSKLREKIVMNKNFANLCIENQLQNYIIFSGNHIAQQVVHSKDDGEYVK 1220 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE---------- 163 + +DV ESL AL++D ++ + + +A+ E+ Sbjct: 1221 MLSDVFESLAGALFVDSHYDLDTVKLIYDEFLWKNFMDEIFTEAENEVSMNSNVTEIVGN 1280 Query: 164 -------------------------WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + K +P F +V + S Sbjct: 1281 PNNPIVTFISTNITRDSSSVLNELLQQFVFNRLDKSEKWYMEESKKPNPPFNMVADFSIT 1340 Query: 199 AP---AQGMDCSKRAAEQVAAAEVLKRE 223 G S + A++ A+AE L+ Sbjct: 1341 IFEKTFTGRGPSIKLAKKQASAECLQYL 1368 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LLE+ALT +YE+LEF GD IL ++S +++ F G LS + VS Sbjct: 934 ELLEEALTAK--RSQVGANYEKLEFFGDSILKYIVSKHIYHEFPLYSSGSLSQLQHKFVS 991 Query: 81 AETCSQVARELDLASFIRVSS 101 + VAR L FI Sbjct: 992 NYFLASVARNTRLPLFIITEP 1012 >gi|37929038|gb|AAP70351.1| ribonuclease III [Ehrlichia ruminantium] gi|37929053|gb|AAP70353.1| ribonuclease III [Ehrlichia ruminantium] gi|37929097|gb|AAP70355.1| ribonuclease III [Ehrlichia ruminantium] gi|37929705|gb|AAP70357.1| ribonuclease III [Ehrlichia ruminantium] gi|37929713|gb|AAP70359.1| ribonuclease III [Ehrlichia ruminantium] Length = 171 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 90/167 (53%) Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 +LFN F EG L+ + +LV ++A+ ++L FI +S R + ++ + Sbjct: 1 MLFNIFPYDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLEN 60 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+LI A+YLDGG+ A F+ +WK A +DAKT LQEWA +K P Y + Sbjct: 61 ALEALIGAIYLDGGLNAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHI 120 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +SGPDH+P FTV V I+ +K+ AEQ AA+ +L + Sbjct: 121 INKSGPDHNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAKIN 167 >gi|156554976|ref|XP_001602524.1| PREDICTED: similar to dicer-1 [Nasonia vitripennis] Length = 1563 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 T+E+R+GY F NR+ L +A TH S + SY+RLEFLGD +L L++ ++ + Sbjct: 1361 QTMEERLGYKFRNRAFLLQAFTHPSYMPNRQTASYQRLEFLGDAVLDFLLTIHIYETCGN 1420 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLA 94 GEL+ ++LV+ T + +A L Sbjct: 1421 LSPGELTDLRSALVNNITFACLAVRYGLH 1449 >gi|297804712|ref|XP_002870240.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata] gi|297316076|gb|EFH46499.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata] Length = 214 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 45/99 (45%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L +LEK + Y F ++ LL +A T +S +SYE LE LGD IL + I + Sbjct: 28 LEIESLEKILNYKFKDKRLLVQAFTDASYVDDKCDSYEILELLGDSILNMSIIDEFIKLY 87 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 G L+ V E ++VA + L ++R Sbjct: 88 PKESPGPLTKLRAVNVDTEKLARVAVKHQLYRYLRHKKP 126 >gi|63054443|ref|NP_588215.2| dicer [Schizosaccharomyces pombe 972h-] gi|1351642|sp|Q09884|DCR1_SCHPO RecName: Full=Protein Dicer; AltName: Full=Cell cycle control protein dcr1; AltName: Full=RNA interference pathway protein dcr1; Includes: RecName: Full=Endoribonuclease dcr1; Includes: RecName: Full=ATP-dependent helicase dcr1 gi|157310516|emb|CAB41233.2| dicer [Schizosaccharomyces pombe] Length = 1374 Score = 82.7 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 2/131 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+ IGY+F N+ LL A H S+ E+Y++LEFLGD +L +I L+ + +A Sbjct: 1086 IEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYPNA 1145 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 GEL+ + V ++ S + L+L +I+ S D + E+ Sbjct: 1146 TSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASENP 1205 Query: 127 YLDGGIEVAGT 137 + I+ Sbjct: 1206 WFWFEIDSPKF 1216 Score = 38.4 bits (87), Expect = 0.81, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALT S Y+RLEF GD L L S +F F +E +L ++S Sbjct: 916 QALT--SAESQLNFDYDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNL 973 Query: 85 SQVARELDLASF 96 +VA + +L + Sbjct: 974 YKVAIDCELPKY 985 >gi|80979131|gb|ABB54768.1| Dicer-2 [Drosophila santomea] Length = 1719 Score = 82.7 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 G L+ ++LV+ T + + L F Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1521 >gi|307169891|gb|EFN62400.1| Ribonuclease 3 [Camponotus floridanus] Length = 1167 Score = 82.7 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 8/165 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T S ++ S +RLEFLGD +L L++S L+ Sbjct: 990 KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1049 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ +T + V +L + + + + T +AD++E+ Sbjct: 1050 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK----TKDRADLLEAF 1105 Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA 165 + ALY+D G++ F D + + + D K++LQ+ Sbjct: 1106 LGALYVDKGLKYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCC 1150 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 20/34 (58%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LE+ +GY F NR LL+ ALTH S ++ + Sbjct: 759 LDNLERTLGYEFKNRYLLQLALTHPSYRENFGTN 792 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 57/122 (46%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 ERLEFLGD ++ L S LF+ F +EG L+ ++V + + +A++L L ++ Sbjct: 847 HNERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLSLEEYML 906 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158 + + A+ E+L+ +L+LDGGIEVA + + K + Sbjct: 907 YAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKSEEDLAKVWVNYP 966 Query: 159 TE 160 Sbjct: 967 RH 968 >gi|157285011|gb|ABV31245.1| dicer-like 3 [Physcomitrella patens] Length = 1641 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 1/113 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 EKRIGY F N L +ALTH S + Y+RLEFLGD +L L++ LF Sbjct: 1349 DLKAFEKRIGYTFKNIYLPLEALTHFSNMVGDQIRCYQRLEFLGDAVLDFLLTRHLFTSH 1408 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 ++ G L+ + V+ E ++VA + L ++R S Sbjct: 1409 PTSTPGLLTSLRTASVNNERFARVAVKHRLHCYLRHGSGRLLHQIEEFVKSFE 1461 >gi|195487840|ref|XP_002092062.1| Dcr-2 [Drosophila yakuba] gi|194178163|gb|EDW91774.1| Dcr-2 [Drosophila yakuba] Length = 1730 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1439 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1498 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 G L+ ++LV+ T + + L F Sbjct: 1499 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1532 >gi|167046036|gb|ABZ10549.1| dicer 1 [Nematostella vectensis] Length = 412 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 1/106 (0%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFN 61 A++ E RIGY F+N+ L +ALTH+S S + + Y+RLEFLGD +L L++ L+++ Sbjct: 236 AVQLQGFENRIGYEFSNKLYLIQALTHASYSQNRLTDCYQRLEFLGDALLDFLVTELIYS 295 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 + GEL+ +LV+ +++A + + S + Sbjct: 296 RNTNLDPGELTDLRQALVNNNIFAEIAVKHGFNKSLFQMSPEWFNK 341 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + LL +ALT S ++ ERLE LGD L +S L+ + EG+L+ R S Sbjct: 16 DSELLLQALTTKSAGDAF--DLERLEMLGDAFLKQAVSIFLYCCYKDGDEGKLTKRKTSQ 73 Query: 79 VSAETCSQVARELDLASFIRVSS 101 +S +VA L L +++ + Sbjct: 74 LSNRALYRVACRLGLPEYLQNTQ 96 >gi|80979119|gb|ABB54762.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 G L+ ++LV+ T + + L F Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1521 >gi|302772092|ref|XP_002969464.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii] gi|300162940|gb|EFJ29552.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii] Length = 1255 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 95/247 (38%), Gaps = 38/247 (15%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +LEK + Y F N++LL +A+TH+S + Y+RLEF+GD +L L++ LF Sbjct: 1008 LLSLEKELCYTFQNKALLLEAITHAS-TPDTVFCYQRLEFIGDAVLDFLVTRHLFTSHPG 1066 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-------------- 111 G LS ++ V+ + ++VA + L S++R S + + Sbjct: 1067 LSPGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGSAELRAKINSFLDVLDRDPECSVMF 1126 Query: 112 -------TSIQADVVESLIAALYLDGGIEVAGTFVD------KYWKQRALKSGKFRRDAK 158 AD+VES+ A+ +D G + +V + L R + Sbjct: 1127 GFKALSGPKALADIVESVAGAILVDSGFDFEKLWVVLKRLLSPFVTPATLSFHPVREFHE 1186 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + ++ + + RFT V +K+ A + A + Sbjct: 1187 LCSYKSWEFEWVQSSSGATAEILLKAGEQRFT-EVS---------SIKNKKDARKDVAEK 1236 Query: 219 VLKREGI 225 +L + Sbjct: 1237 LLTMLKV 1243 Score = 38.4 bits (87), Expect = 0.70, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 42/136 (30%), Gaps = 4/136 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + +A T S+ SYE LE LGD +L ++ L+ + EGELS R + + Sbjct: 815 ILEART--SLRCQDGFSYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELSDRRSHAICNS 872 Query: 83 TCSQVARELDLASFIR--VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 T ++A DL ++R L + + Sbjct: 873 TLRKLAVAQDLPMYVRDEPFYPSYWVGAGMYRQRSRKCCCRLDNLVTKESSKPRPTDATY 932 Query: 141 KYWKQRALKSGKFRRD 156 K Sbjct: 933 YVGKTCGQGHRWMCSK 948 >gi|80979129|gb|ABB54767.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 G L+ ++LV+ T + + L F Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1521 >gi|80979125|gb|ABB54765.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 G L+ ++LV+ T + + L F Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1521 >gi|80979117|gb|ABB54761.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 G L+ ++LV+ T + + L F Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1521 >gi|80979127|gb|ABB54766.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 G L+ ++LV+ T + + L F Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1521 >gi|80979121|gb|ABB54763.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 G L+ ++LV+ T + + L F Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1521 >gi|302819693|ref|XP_002991516.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii] gi|300140718|gb|EFJ07438.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii] Length = 1719 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 82/234 (35%), Gaps = 20/234 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +LE ++ Y F NRSLL +A+TH+S + Y+RLEFLGD +L L+S LF Sbjct: 1461 LESLEHKLQYKFQNRSLLVEAITHAS-QPNCLLCYQRLEFLGDGVLDFLVSRHLFETHPG 1519 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-----TSIQADVVE 120 G L+ ++ V+ + +++ L ++ S A E Sbjct: 1520 LPPGTLTDLRSAAVNNKWFARLVLRHGLHQHLQHGSVELDCEIRKFVQNVKEKPDASCFE 1579 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 L A L +E + K + + L A +F Sbjct: 1580 DLSAPKVLGDLLESITGAIFVDTNFDLEKLWRVVLPLLSPLVTPATLRFHPVRILMELCA 1639 Query: 181 SGPDHDPRF-------TVVVEISGLAPAQGMDCS----KRAAEQVAAAEVLKRE 223 F V V + + S +++A+ AA ++L Sbjct: 1640 RKGMKVSFFRTEATTTEVRVTFGEESLVE---TSQEKPRKSAKIDAALKMLASL 1690 >gi|2244899|emb|CAB10321.1| UFD1 like protein [Arabidopsis thaliana] gi|7268289|emb|CAB78584.1| UFD1 like protein [Arabidopsis thaliana] Length = 778 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 33/99 (33%), Positives = 46/99 (46%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +LEK + Y F ++SLL KA T +S ESYE LE LGD IL + I + Sbjct: 52 MEIESLEKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLY 111 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 G L+ V E ++VA L S++R Sbjct: 112 PKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKP 150 >gi|158706448|sp|Q0UI93|DCL1_PHANO RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease DCL1; Includes: RecName: Full=ATP-dependent helicase DCL1 Length = 1522 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 75/253 (29%), Gaps = 37/253 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E + Y F LL A H S SY+RLEFLGD +L + LF + Sbjct: 1224 KIEMKHPYRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYPD 1283 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-------------- 111 L+ +VS + V +L + ++ ++ + Sbjct: 1284 KDPQWLTEHKTPMVSNKFLGAVCVKLGWHTHMKQNTAILSSQIRDYVYEVEEAEREANGA 1343 Query: 112 ----------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-------- 153 ADV+E+ +AA+++D + + Sbjct: 1344 VDYWVSVSEPPKCLADVIEAFVAAIFVDSEFDFNVVQKFFDLHLKPFFLDMTLDAYENFA 1403 Query: 154 RRDAKTELQEWAHAKFGVTPEYK---VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 T L FG + T P +V I + S R Sbjct: 1404 SNHPTTRLSRLLSINFGCSEWRMGALETETLIPGKGKAIAAMVMIHDKVHFHSLGQSGRY 1463 Query: 211 AEQVAAAEVLKRE 223 A A+ L++ Sbjct: 1464 ARVRASHAALEKL 1476 Score = 41.5 bits (95), Expect = 0.081, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 12/78 (15%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +L +ALT S +YERLEFLGD L + S +F Sbjct: 1018 PALALEALTKDSDNSEEHGEEKINFKSGMGPNYERLEFLGDCFLKVATSLSVFVQQPEEN 1077 Query: 68 EGELSVRFNSLVSAETCS 85 E E VR ++ + Sbjct: 1078 EFEFHVRRMLMLCNQNLM 1095 >gi|80979123|gb|ABB54764.1| Dicer-2 [Drosophila yakuba] Length = 1719 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 G L+ ++LV+ T + + L F Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1521 >gi|80979133|gb|ABB54769.1| Dicer-2 [Drosophila teissieri] Length = 1719 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 G L+ ++LV+ T + + L F Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1521 >gi|158706455|sp|Q2H0G2|DCL1_CHAGB RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease DCL1; Includes: RecName: Full=ATP-dependent helicase DCL1 Length = 1607 Score = 82.3 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 53/282 (18%), Positives = 87/282 (30%), Gaps = 65/282 (23%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E R+GYAF + LL A H + + SY+RLEFLGD +L + LF+ F Sbjct: 1273 ARFEARMGYAFTHPRLLRSAFQHPTYPSVYEKLPSYQRLEFLGDALLDMASVEFLFHRFP 1332 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102 A L+ ++VS + +A L I + Sbjct: 1333 GADPQWLTEHKMAMVSNQFLGCLAVYLGFHRAISYCASAIQKEITEYVTEIEDALQSARD 1392 Query: 103 --------------------------LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 CS DVVE+ + A+++D + A Sbjct: 1393 DASKTPCNRHATTPSPGDLPAESFARDFWVRCSRPPKCLPDVVEAYVGAVFVDSRYDFAR 1452 Query: 137 ------TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD------ 184 V +++ L + T L + + P Sbjct: 1453 VRAFFADHVRPFFEDMRLYDAFANKHPVTFLAGIMQGRMRCAEWRLLVKDLPPVVGAGAG 1512 Query: 185 ---HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P+ V + GL A + S R + AA + ++ Sbjct: 1513 TELETPQVVCAVRVHGLTLAHAVAASGRYGKIAAAKKAIQVL 1554 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 38/116 (32%), Gaps = 17/116 (14%) Query: 1 MSAL--RYSTLE--KRIGYAFANRSLLEKALT--------HS----SISHSYQESYERLE 44 M + LE K + L +A T H S +YERLE Sbjct: 1056 MHRIDSNLVALEACKMLNLNVR-PDLALEAFTKDSDNSGEHDAEQISFQSGMGNNYERLE 1114 Query: 45 FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 FLGD L + + +F E E V L+ A E+ L IR Sbjct: 1115 FLGDCFLKMATTISIFTLIPDKAEFEYHVERMLLICNRNLFNNALEVKLEEHIRSM 1170 >gi|289619621|emb|CBI53904.1| unnamed protein product [Sordaria macrospora] Length = 1586 Score = 82.3 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 84/283 (29%), Gaps = 66/283 (23%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +R+GY F + LL A H + + SY+RLEFLGD + ++ LF F Sbjct: 1259 DKFSERMGYKFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFP 1318 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102 +A L+ ++VS + ++ L + S Sbjct: 1319 AADPQWLTEHKMAMVSNQFLCCLSYHLGFYKCVATMSPSILKDIAEYVTEIEEALEAAKQ 1378 Query: 103 -----------------LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK- 144 + S + +DVVE+ I A+++D + + Sbjct: 1379 EAVNQGKAPEEYSRDYWVHITHVSRLPKCLSDVVEAYIGAIFVDSEYDYSVVQQFFTTHV 1438 Query: 145 -----QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--------------- 184 L + T + KF + D Sbjct: 1439 LPFFEDMHLYDSFANKHPVTFVANMMAHKFCCQEWRSLAKELDTDVSEGRGGRGGAVAGE 1498 Query: 185 ----HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + P+ + + G A + S R A+ A + +K Sbjct: 1499 ITEINPPKVVSALLVHGKTVAHAVAASGRYAKSAMAKKAIKML 1541 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 12/99 (12%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +A T S ++YERLEFLGD L + + ++ Sbjct: 1066 PDLALEAFTKDSDNSNEHDVEQVNFQTGMGDNYERLEFLGDSFLKMATTMSIYTLIPDKG 1125 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 E E V L+ + A E+ L +IR S R+ Sbjct: 1126 EFEYHVERMLLICNKNLLNNALEVGLEEYIRSMSFNRRQ 1164 >gi|307169911|gb|EFN62420.1| Endoribonuclease Dcr-1 [Camponotus floridanus] Length = 506 Score = 82.3 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 1/112 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +IGY F NR+ L +A TH S + + E Y+RLEFLGD IL LI+ ++ + Sbjct: 252 NDMETKIGYKFNNRAFLLQAFTHPSYTPNVITECYQRLEFLGDAILDFLITCYIYETCGN 311 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 G L+ ++LV+ T + +A L + + + + Q + Sbjct: 312 LSPGHLTDLRSALVNNITFACLAVRYGLDTALLSYAPKLHEAIDRFVKFQQE 363 >gi|320527636|ref|ZP_08028810.1| RNase3 domain protein [Solobacterium moorei F0204] gi|320131957|gb|EFW24513.1| RNase3 domain protein [Solobacterium moorei F0204] Length = 373 Score = 82.3 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 84/281 (29%), Gaps = 59/281 (20%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFD 64 + ++ IGY F N+ LLE+A T S S E E LEF+GD+ L + I +L F Sbjct: 7 INDIQNIIGYTFKNQELLEQAFTRRSYSMENGGEHNEVLEFIGDKALDIAIVKILSEEFG 66 Query: 65 SAKEGELSV-------------------------RFNSLVSAETCSQVARELDLASFIRV 99 + E +V T S L L ++ + Sbjct: 67 YFNKSEQRRSNYYYSPKVYDGTFSSDKDEGELTEIKKRIVKKTTLSDAIDNLGLQHYLIM 126 Query: 100 SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK--------------- 144 RK S + D+ E++I A+ LD ++ Sbjct: 127 GRGDRKKHVERSNSTKEDLFEAIIGAIALDSRWDINMIQETVENMIEIDDIIGSDEDSYI 186 Query: 145 --QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 + + + + ++ + + +F V S A Sbjct: 187 EEIQNWSLKHYDVLPDYSVCNYLPSEMNIGTPDWAKPNTMWSLINQFKRGVFDSNTQYAS 246 Query: 203 ------------GMDCSKRAAEQVAAAEVLKREG----IWT 227 G SK A++ A+ + +WT Sbjct: 247 LLILEDVPCCFIGYGNSKNQAKEEASRLAYEYLDEHDLLWT 287 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 1/80 (1%) Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 W + +R + +L+ A + P Y D +P + I Sbjct: 286 WTIQDEIENPCKRMSVNQLETLARRGYFSLPTYNFYEDHDEDGNPVWKCECHIDEENIFC 345 Query: 203 -GMDCSKRAAEQVAAAEVLK 221 SK+ A++ AA +LK Sbjct: 346 WSTASSKKDAKKDAAWGMLK 365 >gi|169768544|ref|XP_001818742.1| ATP-dependent helicase dcl2 [Aspergillus oryzae RIB40] gi|121804870|sp|Q2UNX5|DCL2_ASPOR RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 gi|83766600|dbj|BAE56740.1| unnamed protein product [Aspergillus oryzae] Length = 1377 Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 3/116 (2%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSA 66 L++ +GY F N LL +ALTH S H +SY+RLEFLGD IL ++I ++F + + Sbjct: 1094 DLQRHLGYTFKNEDLLIEALTHPSCQHDQTTQSYQRLEFLGDAILDMVIVPIIFQYSNKI 1153 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G++++ +++V+A E + + F + VE Sbjct: 1154 SPGDMTLIKHAVVNANLLGFFCMEFSIEQDKTKVE--KTPDGRFAVKSETQHVELW 1207 Score = 42.6 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 FA+ + A+ S +Y+R EFLGD IL ++S LF + EG L+ Sbjct: 925 FADIQHVITAIMAPSAQ--GVTNYQRYEFLGDSILKYIVSCQLFFQNLNWPEGFLTEGRT 982 Query: 77 SLVSAETCSQVARELDLASFIR 98 ++V ++ A + L SFI Sbjct: 983 TIVQNPRLTRAALDAGLDSFII 1004 >gi|156368540|ref|XP_001627751.1| predicted protein [Nematostella vectensis] gi|156214670|gb|EDO35651.1| predicted protein [Nematostella vectensis] Length = 199 Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 1/103 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 EKRIGY F+N+ L +ALTH+S S + + Y+RLEFLGD +L L++ L+++ Sbjct: 1 LQGFEKRIGYEFSNKLYLIQALTHASYSQNRLTDCYQRLEFLGDALLDFLVTELIYSRNT 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 + GEL+ +LV+ +++A + + S + Sbjct: 61 NLDPGELTDLRQALVNNNIFAEIAVKHGFNKSLFQMSPEWFNK 103 >gi|86742282|ref|YP_482682.1| ribonuclease III [Frankia sp. CcI3] gi|86569144|gb|ABD12953.1| RNAse III [Frankia sp. CcI3] Length = 270 Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 6/197 (3%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL++ALTH S ++ + ERLEFLGD +LGL+++ LF EG+L+ + Sbjct: 23 DPELLDRALTHRSYAYEKGGLPTNERLEFLGDAVLGLVVTAALFIRHPDLPEGQLAKQRA 82 Query: 77 SLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S+V+ + VAR + ++ + SI AD +E++I A+YL G++ Sbjct: 83 SVVNMRALADVARGIGPTGLGPYLLLGRGEETTGGRDKASILADTLEAIIGAVYLSSGLD 142 Query: 134 VAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 VA FV + + +G+ + A + P + +GPDH RFT Sbjct: 143 VASGFVHRLFDPLLDEAAGRGAGLDWKTSLQEQTAVLALGPPEYIVEEAGPDHAKRFTAY 202 Query: 193 VEISGLAPAQGMDCSKR 209 I+G +G SK+ Sbjct: 203 ARIAGEPLGEGEGGSKK 219 >gi|302755618|ref|XP_002961233.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii] gi|300172172|gb|EFJ38772.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii] Length = 1291 Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 38/247 (15%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +LEK + Y F N++LL +A+TH+S + Y+RLEF+GD +L L++ LF Sbjct: 1044 LLSLEKELCYTFQNKALLLEAITHAS-TPDTVFCYQRLEFIGDAVLDFLVTRHLFTSHPG 1102 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRV---------------------SSDLR 104 G LS ++ V+ + ++VA + L S++R S + Sbjct: 1103 LSPGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGSAELRAKITSFLDVLDRDPECSVMF 1162 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD------KYWKQRALKSGKFRRDAK 158 AD+VES+ A+ +D G + +V + L R + Sbjct: 1163 GFKALSGPKALADIVESVAGAILVDSGFDFEKLWVVLKRLLSPFVTPATLSFHPVREFHE 1222 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + ++ + + RFT V +K+ A + A + Sbjct: 1223 LCSYKSWEFEWVQSSSGATAEILLKAGEQRFT-EVS---------SIKNKKDARKDVAEK 1272 Query: 219 VLKREGI 225 +L + Sbjct: 1273 LLTMLKV 1279 Score = 39.1 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 42/136 (30%), Gaps = 4/136 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + +A T S+ SYE LE LGD +L ++ L+ + EGELS R + + Sbjct: 851 ILEART--SLRCQDGFSYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELSDRRSHAICNS 908 Query: 83 TCSQVARELDLASFIR--VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 T ++A DL ++R L + + Sbjct: 909 TLRKLAVAQDLPMYVRDEPFYPSCWVGAGMYRQRSRKCCCRLDNLVTKESSKPRPTDATY 968 Query: 141 KYWKQRALKSGKFRRD 156 K Sbjct: 969 YVGKTCGQGHRWMCSK 984 >gi|148238540|ref|YP_001223927.1| ribonuclease III [Synechococcus sp. WH 7803] gi|147847079|emb|CAK22630.1| Ribonuclease III [Synechococcus sp. WH 7803] Length = 240 Score = 81.9 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 8/206 (3%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +ALTH+S +E+LEFLGD +L L S + + GE S LVS Sbjct: 32 LNEALTHTS--SGLNPHHEQLEFLGDAVLRLAASEFIATAYPQMPVGERSSLRAQLVSDR 89 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTFV 139 +Q+ + +A + R+ + + + + A Sbjct: 90 WLAQLGEAIAIAQWWRI--GPKASGDPSAAATIRAELSEALIGAVYRIAGLQTVQAWLTP 147 Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGL 198 A+ + +R ++K+ LQEW+ + P Y + S DP RF V + Sbjct: 148 HWQTSAEAVLADPYRGNSKSALQEWSQGQGLGLPRYSCSEVSQSHGDPKRFQASVTLPPD 207 Query: 199 APAQGMDCSKRAAEQVAAAEVLKREG 224 A G S+R AEQ AA ++ + Sbjct: 208 LSAAGWGGSRREAEQQAAEALMAQLK 233 >gi|121610179|ref|YP_997986.1| ribonuclease III [Verminephrobacter eiseniae EF01-2] gi|189043373|sp|A1WMW1|RNC_VEREI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|121554819|gb|ABM58968.1| RNAse III [Verminephrobacter eiseniae EF01-2] Length = 247 Score = 81.9 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 104/232 (44%), Gaps = 26/232 (11%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L++R+ + F++ LLE+A TH S S + ERLEFLGD +L L +S+LL+ Sbjct: 4 DLIALQERLQHVFSDPGLLERATTHRSFSAEH---NERLEFLGDSVLNLAVSSLLYQRLS 60 Query: 65 SAKEGELSVRFNSLVSAETCSQVAREL--------------------DLASFIRVSSDLR 104 + EGELS +LV E+ Q+A L + D Sbjct: 61 ALPEGELSRVRANLVRQESLYQLALRLPLAQALRLGESLSGNRQRRSRRRCADELQPDEA 120 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQ 162 SI AD +E+LI A+YLD G A + + + RDAKT LQ Sbjct: 121 GSGGLQHPSILADALEALIGAVYLDAGYASAQALVQRLFQDVEISPRMQAAARDAKTALQ 180 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213 EW ++ P+Y+V R G H P F V I L + G S++A EQ Sbjct: 181 EWLASRKMKPPQYQVVARVGAAHCPTFEVACGIPALGLTERGSAGSRQAGEQ 232 >gi|254423613|ref|ZP_05037331.1| ribonuclease III [Synechococcus sp. PCC 7335] gi|196191102|gb|EDX86066.1| ribonuclease III [Synechococcus sp. PCC 7335] Length = 263 Score = 81.9 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 87/226 (38%), Gaps = 10/226 (4%) Query: 5 RYSTLEKRIGYAFAN--RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 L +G + A+ LLE AL S S ++ E+LEFLGD L L + L Sbjct: 33 DIEALLTALGISAADVRLELLELALVDIS--SSATQNNEKLEFLGDAALRLAAAEFLMER 90 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--RKDVCSFMTSIQADVVE 120 + G++S + +VS T + +A+ L ++ +S K + + + Sbjct: 91 YPQMALGDMSAVRSQIVSDRTLATLAKRYHLRRYLILSKSAAGDKAGTDSRLADTFEAIL 150 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + + + ++L+S R++ K LQE + + P YKV+ Sbjct: 151 GALYLSAGNLSLIRPWLDPHFARLTQSLRSDPARQNYKAALQELTQSHYKSLPTYKVSEI 210 Query: 181 SGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKR 222 S D RF G S + AEQ AA L++ Sbjct: 211 SQIHGDEERFQAEAWFQDKLWGTGKGRSMKMAEQAAARIAFNALEQ 256 >gi|198457361|ref|XP_001360634.2| GA19635 [Drosophila pseudoobscura pseudoobscura] gi|198135949|gb|EAL25209.2| GA19635 [Drosophila pseudoobscura pseudoobscura] Length = 1720 Score = 81.9 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 1/121 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE+ +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1438 INHSYLEQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDFLISAYIFEN 1497 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + + GEL+ ++LV+ T + L FI + L + S Q + Sbjct: 1498 NNKLRPGELTDLRSALVNNTTLGCICVRHKLHLFILAENALLSETISKFVKFQESQGHRV 1557 Query: 123 I 123 Sbjct: 1558 T 1558 >gi|270001216|gb|EEZ97663.1| hypothetical protein TcasGA2_TC016208 [Tribolium castaneum] Length = 1063 Score = 81.9 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 12/198 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E+ +G F + LL +A T S ++ S +RLEFLGD +L L+ S L+ + Sbjct: 867 NLTKFEESVGLQFNHIRLLARAFTDRSVGYTNLTLGSNQRLEFLGDTVLQLIASEYLYKY 926 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG LS+ +SLV+ T + V +L ++++ T +AD++E+ Sbjct: 927 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMSNYAV----YNNPKAELKTKDRADLLEAF 982 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I ALY+D G+E F R + +K T G Sbjct: 983 IGALYVDQGLEFCEVFCQVTLFPRLQDFI------MNQDWNDPKSKLQQCCLTLRTMDGG 1036 Query: 183 PDHDPRFTVVVEISGLAP 200 P + VV + Sbjct: 1037 EPDIPVYKSVVCFTNSEV 1054 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 21/34 (61%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 + LE+ + Y F NR+LL+ ALTH S ++ + Sbjct: 636 LNILEESVNYKFKNRALLQLALTHPSYRENFGTN 669 Score = 44.9 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 48/98 (48%) Query: 33 SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD 92 + S ERLEFLGD ++ L S LF F +EG L+ ++V + + +A+ L Sbjct: 718 TESNITHNERLEFLGDAVVEFLSSIHLFYTFPDLEEGGLATYRAAIVQNQHLAVLAKTLK 777 Query: 93 LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L F+ + + A+ E+L+ AL+LDG Sbjct: 778 LDQFMLYAHGSDLCHDLELRHAMANCFEALMGALFLDG 815 >gi|284039991|ref|YP_003389921.1| ribonuclease III [Spirosoma linguale DSM 74] gi|283819284|gb|ADB41122.1| ribonuclease III [Spirosoma linguale DSM 74] Length = 253 Score = 81.9 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 7/202 (3%) Query: 12 RIGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 IG +N L + AL H+S S ++ES ERLE+LGD +LG++I+ LF + Sbjct: 34 IIGARPSNLGLYQLALRHTSASKATAIEGFRESNERLEYLGDAVLGMVIAEFLFKKYPYK 93 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ + +V+ ET + +AR++ L + R TS+ D +E+L+ A+ Sbjct: 94 DEGFLTEIRSRIVNRETLNGIARKIGLDQ-LIEYDGSRTRSLPARTSMYGDALEALVGAV 152 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA-HAKFGVTPEYKVTFRSGPDH 185 YLD G + F+ K + + + + + G +++ G H Sbjct: 153 YLDKGFRFSRRFILKDLLAHYDIESVVQNNGNYKSRLIEWAQREGKEIRFEIVSEKGNSH 212 Query: 186 DPRFTVVVEISGLAPAQGMDCS 207 F V I A G S Sbjct: 213 FREFISQVVIDDEPFATGSGYS 234 >gi|195150547|ref|XP_002016212.1| GL10619 [Drosophila persimilis] gi|194110059|gb|EDW32102.1| GL10619 [Drosophila persimilis] Length = 1720 Score = 81.9 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE+ +GY F +R L +ALTH S ++ Y+ LEF+GD IL LIS +F + Sbjct: 1438 INHSYLEQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDFLISAYIFEN 1497 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + GEL+ ++LV+ T + L FI + L + S Q + Sbjct: 1498 NTKLRPGELTDLRSALVNNTTLGCICVRHKLHLFILAENALLSETISKFVKFQESQGHRV 1557 Query: 123 I 123 Sbjct: 1558 T 1558 >gi|195425457|ref|XP_002061021.1| GK10670 [Drosophila willistoni] gi|194157106|gb|EDW72007.1| GK10670 [Drosophila willistoni] Length = 1720 Score = 81.9 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 1/121 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + Y LE+ +GY F +R+ L +ALTH S ++ Y+ LEF+GD IL LIS +F Sbjct: 1436 INYHYLERNLGYTFKDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFER 1495 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 G+L+ ++LV+ T + + FI + L + + Q + + Sbjct: 1496 NIRMNPGQLTDLRSALVNNTTLACICVRHRFHLFILAENTLLTESINSFVDFQEKHMHRV 1555 Query: 123 I 123 Sbjct: 1556 T 1556 Score = 40.3 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 5/88 (5%) Query: 5 RYSTLEKRI---GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + S L+K I A +S A+T S S ERLE LGD L + + L + Sbjct: 1179 QLSVLQKTISNEHITPAEQSEFLTAIT--SSGCSDVFDMERLELLGDSFLKMSATLYLSS 1236 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVAR 89 + EG L+ ++LVS Sbjct: 1237 IHSNWNEGVLTQIKSTLVSNRNLLYCMN 1264 >gi|86605510|ref|YP_474273.1| ribonuclease III [Synechococcus sp. JA-3-3Ab] gi|86554052|gb|ABC99010.1| ribonuclease III [Synechococcus sp. JA-3-3Ab] Length = 241 Score = 81.5 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 16/215 (7%) Query: 6 YSTLEKRIGYAFANR--------SLLEKALTHSSISHSYQESYERLEFLGDRILGLLIST 57 L R+G F + LL++AL H S+ Q + +RLEFLGD +L +L + Sbjct: 12 LEHLLNRLG--FKDPAWLEQLRWDLLDQALIHPSL--DGQRNNDRLEFLGDSVLRILATE 67 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + GEL+ + L+S +++A L ++ V S + D+ AD Sbjct: 68 FLFQSYPHLSVGELTAVRSDLISDAHLAELADLHGLERYLEVGSSSQNDLAGRER-RLAD 126 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+++ +LYL G+ + ++ +D + A + + Sbjct: 127 AFEAVLGSLYLSWGMHTLARLHPWLDPYFRQRVEQWFQDPTRRNPKAALQELTQRLWGTL 186 Query: 178 TFRS---GPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +H P FT+ V G +G SK+ Sbjct: 187 PEYRLVAAREHPPHFTMEVWGHGQCWGRGEGRSKK 221 >gi|310798327|gb|EFQ33220.1| RNase3 domain-containing protein [Glomerella graminicola M1.001] Length = 1532 Score = 81.5 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 2/98 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58 M +++ +GY F +LL A H S ++ +Y+RLEFLGD +L ++ Sbjct: 1233 MQKELARQIKENLGYEFKYPALLRSAFKHPSYPRAYEDLPNYQRLEFLGDALLDMVCVDF 1292 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 LF F A L+ ++VS + + + +L L Sbjct: 1293 LFKKFPDADPQWLTEHKTAMVSNQFLACLCVQLGLHKH 1330 Score = 39.5 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 12/91 (13%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +A+T S ++YE+LEFLGD L + + LF Sbjct: 1046 PDLALEAVTKDSDNSDEHGKNKINFQGGMGKNYEQLEFLGDCFLKMATTIALFTQNPEDN 1105 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 E V L+ + A + L ++R Sbjct: 1106 EFAYHVERMLLICNQNLFNKAVDRSLPEYVR 1136 >gi|300868781|ref|ZP_07113390.1| ribonuclease III [Oscillatoria sp. PCC 6506] gi|300333217|emb|CBN58582.1| ribonuclease III [Oscillatoria sp. PCC 6506] Length = 237 Score = 81.5 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 8/210 (3%) Query: 6 YSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 L +++G NR LL+ ALTH + S Q +YE+LEF+GD ++ L S LLF Sbjct: 12 LEKLVEKLGLPDRNRVNWQLLDLALTHPTAS--TQANYEQLEFIGDAVVRLAASELLFET 69 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + + GE + + LVS T +Q+A ++ VSS D + + L Sbjct: 70 YPGSSVGEFAAIRSLLVSDRTLAQIADSYGFGRYLIVSSSAACDKAGEESRLADAFEAVL 129 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA-HAKFGVTPEYKVTFRS 181 A +++ ++D +++ RA + + + Sbjct: 130 AALYLSTNTLQLIRPWLDPHFQPRAAQILSDPARQNYKAALQEWTQGQYKILPEYNVKET 189 Query: 182 GPDH--DPRFTVVVEISGLAPAQGMDCSKR 209 G H + RFT V + G +G S + Sbjct: 190 GRVHGEEERFTAEVWLRGDLLGEGKGRSIK 219 >gi|85105148|ref|XP_961898.1| hypothetical protein NCU08270 [Neurospora crassa OR74A] gi|74616659|sp|Q7S8J7|DCL1_NEUCR RecName: Full=Dicer-like protein 1; Includes: RecName: Full=Endoribonuclease dcl-1; Includes: RecName: Full=ATP-dependent helicase dcl-1 gi|28923482|gb|EAA32662.1| predicted protein [Neurospora crassa OR74A] Length = 1584 Score = 81.5 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 82/285 (28%), Gaps = 68/285 (23%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +R+GY F + LL A H + + SY+RLEFLGD + ++ LF F Sbjct: 1259 KKFSERMGYKFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFP 1318 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102 +A L+ ++VS + ++ L I S Sbjct: 1319 AADPQWLTEHKMAMVSNQFLCCLSFHLGFNKCIATMSPSILKDIAEYVTEIEEALETAKQ 1378 Query: 103 -----------------LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK- 144 + S + +DVVE+ I A+++D + + Sbjct: 1379 EAINAGKTADEYSRDYWVHITHASRLPKCLSDVVEAYIGAIFVDSEYDYSVVQNFFNMHV 1438 Query: 145 -----QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--------------- 184 L + T + KF D Sbjct: 1439 LPFFEDMHLYDTFANKHPVTFVANMMAHKFRCNEWRSFAKELDTDVTEGRGGRGGNGAVA 1498 Query: 185 ------HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + P+ + + G + S R A+ A + +K Sbjct: 1499 GEISEINPPKVVSALLVHGKTVVHAVAASGRYAKSAMAKKAIKLL 1543 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 12/99 (12%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +A T S ++YERLEFLGD L + + ++ Sbjct: 1066 PDLALEAFTKDSDNSDEHDAEKENFQTGMGDNYERLEFLGDSFLKMATTIAIYTLIPDKG 1125 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 E E V L+ + A E+ L +IR S R+ Sbjct: 1126 EFEYHVERMLLICNKNLFNNALEIGLEEYIRSMSFNRRQ 1164 >gi|313906469|ref|ZP_07839804.1| ribonuclease III [Eubacterium cellulosolvens 6] gi|313468696|gb|EFR64063.1| ribonuclease III [Eubacterium cellulosolvens 6] Length = 365 Score = 81.1 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 86/268 (32%), Gaps = 49/268 (18%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLL 59 M + ++ +IGY F N LL +A S + E+ E LEF+GD +L + L Sbjct: 7 MKTV----VQNQIGYEFQNPLLLRQAFVRKSYTEENGGENNEVLEFIGDTVLSTAVMRYL 62 Query: 60 ----------------------FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 + EGELS L +T ++ EL F+ Sbjct: 63 TEKYGNAPSFKRPIWPNTPQKPMDFHCEKTEGELSRLKQKLTEKKTLARKIDELGFDKFL 122 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRR 155 + + S++ D+ E+++ A+ LD + + ++ + Sbjct: 123 IMGKGDIGQNMTKQASVKEDLFEAILGAVALDSSFDYKKIQSVVEIMLHPDSIVNDGEEA 182 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSG--------------PDHDPRF-----TVVVEI- 195 D + EW +A + G PD F T + I Sbjct: 183 DYVQLIYEWDNAFGAIPYFRYRQEPYGISLSPYNPEVIVIVPDQRSSFSELCYTCEMSIR 242 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 L + SK A Q A K Sbjct: 243 KDLPRFKAYGSSKAIARQNACEAAYKYL 270 >gi|94469424|gb|ABF20201.1| ribonuclease III [Ehrlichia ruminantium] Length = 145 Score = 81.1 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 74/136 (54%) Query: 89 RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 + ++L FI +S R + ++ + +E+LI A+YLDGG++ A F+ + K A Sbjct: 6 QSINLGIFIIMSDGERSCGGAKNSNNLENALEALIGAIYLDGGLKAAKDFIFLFRKNSAT 65 Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I +K Sbjct: 66 HMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATGHNK 125 Query: 209 RAAEQVAAAEVLKREG 224 + AEQ AA+ +L++ Sbjct: 126 KLAEQKAASLMLEKIN 141 >gi|226510363|ref|NP_001140816.1| hypothetical protein LOC100272891 [Zea mays] gi|194701228|gb|ACF84698.1| unknown [Zea mays] Length = 376 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 93/242 (38%), Gaps = 32/242 (13%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +E+ + Y F +R+LLE+ALTH S S SY+RLEF+GD LGL S L+ + Sbjct: 42 ARVERLLRYQFCDRALLEEALTHQSFSDG-ALSYQRLEFVGDAALGLAFSNFLYLTNPTL 100 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL----------------------R 104 G LS + +S E ++VA DL +R Sbjct: 101 GPGALSTLRAANISTEKLARVAVRHDLYPLLRRKCPRLDLLVGQFIESVKQELMHDLATA 160 Query: 105 KDVCS--FMTSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKTEL 161 S + AD+VE++ AA+Y+D ++ V ++ + + + T L Sbjct: 161 PYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDEQPVTTL 220 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 E V D V V + G G K A+ AA + L Sbjct: 221 HELCQKHGKVAQFKTWQK------DGMIVVNVFVGGEMVGLGSSEQKVIAKLNAARDALG 274 Query: 222 RE 223 + Sbjct: 275 KL 276 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS---GLAPAQGMDCSK-RA 210 R+ K +L E K P +K+ GP H+ F V++ G G S+ + Sbjct: 301 RECKQKLIEQCIRKHWPKPIFKLEKEGGPAHERNFVCSVQVDTQTGTFVTIGESMSRVKD 360 Query: 211 AEQVAAAEVLKRE 223 AE AA ++++ Sbjct: 361 AENSAAHKMVELL 373 >gi|255030397|ref|ZP_05302348.1| ribonuclease III [Listeria monocytogenes LO28] Length = 102 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 6/102 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M+ ++ L++ +G+ F N LL++A THSS + ++ + ERLEFLGD +L L +S Sbjct: 1 MN--QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 LFN + EG ++ ++V + + A + + ++R Sbjct: 59 DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVR 100 >gi|317148472|ref|XP_001822794.2| RNase3 domain protein [Aspergillus oryzae RIB40] Length = 354 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 78/212 (36%), Gaps = 13/212 (6%) Query: 21 SLLEKA-LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +LE+A TH +S+ +++Y+RLE LGD + L+ + L++ F G +S LV Sbjct: 123 KVLERAVFTHPGVSNDTEKTYDRLEILGDAYIELIATKLIWKRFREIPSGRISQIRELLV 182 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 ET ++ A L V D + T +AD+ E+ +AA + ++ Sbjct: 183 KNETLAEYAAGYGLDRKAAVPQDYLRQS-KRWTKTRADIFEAYVAAAIISHPVDGYRVVE 241 Query: 140 DKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-----DHDPRFTVVV 193 + + K + + +E K P F V V Sbjct: 242 NWLTQLWLPKLSELGIQKPVLNAKELLARKIMGKGIKLRYIDEHPPAQQGPGMQTFFVGV 301 Query: 194 EI-----SGLAPAQGMDCSKRAAEQVAAAEVL 220 + + G +K A AA + L Sbjct: 302 YLTGWGWNNKHLGSGQGPNKTIAGNEAAHQAL 333 >gi|238503379|ref|XP_002382923.1| nucleolar RNAse III, putative [Aspergillus flavus NRRL3357] gi|83771529|dbj|BAE61661.1| unnamed protein product [Aspergillus oryzae] gi|220691733|gb|EED48081.1| nucleolar RNAse III, putative [Aspergillus flavus NRRL3357] Length = 234 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 78/212 (36%), Gaps = 13/212 (6%) Query: 21 SLLEKA-LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +LE+A TH +S+ +++Y+RLE LGD + L+ + L++ F G +S LV Sbjct: 3 KVLERAVFTHPGVSNDTEKTYDRLEILGDAYIELIATKLIWKRFREIPSGRISQIRELLV 62 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 ET ++ A L V D + T +AD+ E+ +AA + ++ Sbjct: 63 KNETLAEYAAGYGLDRKAAVPQDYLRQS-KRWTKTRADIFEAYVAAAIISHPVDGYRVVE 121 Query: 140 DKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-----DHDPRFTVVV 193 + + K + + +E K P F V V Sbjct: 122 NWLTQLWLPKLSELGIQKPVLNAKELLARKIMGKGIKLRYIDEHPPAQQGPGMQTFFVGV 181 Query: 194 EI-----SGLAPAQGMDCSKRAAEQVAAAEVL 220 + + G +K A AA + L Sbjct: 182 YLTGWGWNNKHLGSGQGPNKTIAGNEAAHQAL 213 >gi|328768090|gb|EGF78137.1| hypothetical protein BATDEDRAFT_37305 [Batrachochytrium dendrobatidis JAM81] Length = 343 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 82/231 (35%), Gaps = 13/231 (5%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + + + R G F +L +TH S + ES +R +LG +L ++ + Sbjct: 84 NKAQVAAFSARTGILFDTPDILSLVMTHKSA---HLESNDRYVYLGSTVLKTFVTEYVLA 140 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADV 118 + + + +S + V + L + +R + + + +++A V Sbjct: 141 KYPLMQADIAERVIEAYISTSVVASVGQTLGVHLLMRWKGSTDANSNAVSDGVNTVRASV 200 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF------RRDAKTELQEWAHAKFGVT 172 + +LI A+Y G A T + K++ RA + L Sbjct: 201 MHALIGAVYQHKGPHAARTLIHKHFLSRATDVQSIVEAQLKMDKPRKLLAITCKNLKKPK 260 Query: 173 PEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P ++ +G F V V +G S + AEQ A + L + Sbjct: 261 PISRLLGETGRLSSRSVFLVGVYCGIEKIGEGYGSSIKMAEQRACIDALSK 311 >gi|222619725|gb|EEE55857.1| hypothetical protein OsJ_04485 [Oryza sativa Japonica Group] Length = 1839 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 1/98 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE ++GY+F+ + LL +ALTH S + YERLEFLGD +L +L++ LFN Sbjct: 1175 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1234 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 EGEL+ ++ V+ E +QVA + + F++ SS Sbjct: 1235 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSG 1272 >gi|218189575|gb|EEC72002.1| hypothetical protein OsI_04862 [Oryza sativa Indica Group] Length = 1858 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 1/98 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE ++GY+F+ + LL +ALTH S + YERLEFLGD +L +L++ LFN Sbjct: 1175 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1234 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 EGEL+ ++ V+ E +QVA + + F++ SS Sbjct: 1235 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSG 1272 >gi|115441737|ref|NP_001045148.1| Os01g0909200 [Oryza sativa Japonica Group] gi|75321191|sp|Q5N870|DCL3A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3a; AltName: Full=Dicer-like protein 3a; Short=OsDCL3a gi|56785369|dbj|BAD82327.1| putative Endoribonuclease Dicer homolog [Oryza sativa Japonica Group] gi|113534679|dbj|BAF07062.1| Os01g0909200 [Oryza sativa Japonica Group] Length = 1651 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 1/98 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE ++GY+F+ + LL +ALTH S + YERLEFLGD +L +L++ LFN Sbjct: 1241 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1300 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 EGEL+ ++ V+ E +QVA + + F++ SS Sbjct: 1301 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSG 1338 Score = 46.1 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 4/94 (4%) Query: 7 STLEKRIGYAFANRS--LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S L IGY+ +N S L+ +A+T ++ S S ERLE LGD +L +S LF F Sbjct: 1032 SQLRSEIGYSDSNISSFLILEAIT--TLRCSEDFSMERLELLGDSVLKYAVSCHLFLKFP 1089 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + EG+LS ++ T ++ E ++ ++R Sbjct: 1090 NKDEGQLSSIRCHMICNATLYKLGIERNVQGYVR 1123 >gi|289209108|ref|YP_003461174.1| ribonuclease III [Thioalkalivibrio sp. K90mix] gi|288944739|gb|ADC72438.1| ribonuclease III [Thioalkalivibrio sp. K90mix] Length = 236 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 67/187 (35%), Positives = 93/187 (49%), Gaps = 6/187 (3%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +ALTH S + ERLEFLGD +LGL+I+ L+ A EG+L+ +LV+ E+ Sbjct: 30 RQALTHRSAG---GRNNERLEFLGDAVLGLVIADALYEQLPDAPEGDLTRLRAALVNRES 86 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 + +ARE L + + RK SI AD VE+LI Y + G++ A F + Sbjct: 87 LAALARESGLEGTLNLGQGERKSGGQRRDSILADAVEALIGVTYREAGMQAARDFTLALY 146 Query: 144 KQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 +R L S + +D KT LQE + P Y+V GPDH RFTV V + Sbjct: 147 AERLGNLPSAESLKDPKTRLQEQLQGRNAELPVYEVLEVVGPDHQRRFTVSVHLPTQGWG 206 Query: 202 -QGMDCS 207 QG S Sbjct: 207 QQGEGSS 213 >gi|224116530|ref|XP_002317324.1| predicted protein [Populus trichocarpa] gi|222860389|gb|EEE97936.1| predicted protein [Populus trichocarpa] Length = 217 Score = 80.7 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 26/216 (12%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +EK + Y F N+ LE+ALTHSS + SY+R+EFLGD LGL +S ++ + Sbjct: 7 AVEKILNYKFKNKRHLEEALTHSSYTD--SASYQRMEFLGDAALGLALSNYVYLAYPQLD 64 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM---------------- 111 G LS+ + +S E ++VA + L F+R ++ D Sbjct: 65 PGHLSLLRAANISTEKLARVAIKHGLYRFVRHNATALDDKVKEFSDAVSGEDDDDALVYG 124 Query: 112 -----TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 I AD+VES+ AA+Y+D ++ +V + + + + + Sbjct: 125 GSIKAPKILADIVESVAAAVYVDVDFDLQTFWVIFRGILEPIVTLEDLQQQPQPVTMLFE 184 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 + V + G A Sbjct: 185 RCQKQGKNVDIKHWKNEAKS---IASVYVDGQFIAS 217 >gi|317133782|ref|YP_004089693.1| ribonuclease III [Ruminococcus albus 7] gi|315450244|gb|ADU23807.1| ribonuclease III [Ruminococcus albus 7] Length = 506 Score = 80.7 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 88/248 (35%), Gaps = 35/248 (14%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLF------ 60 L GY F N +LL +A T + Y E+ EFLG+ +L +++ + Sbjct: 148 LSSITGYKFQNENLLRQAFTRKAFKEEYHLTRCSEQFEFLGNAVLNAMVTKEIVKQSILN 207 Query: 61 ---------NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +G ++ V+ E ++ A L FI +K S Sbjct: 208 LPEYVDGVAWLNSERDKGYMTKLRTQYVNKEFLAERATTLGFDRFILYGKGEKKSQNSR- 266 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 D++E++I A+ D + + + E+ +W FG Sbjct: 267 ----GDIIEAIIGAVAFDCNWDWSTLEKVVFNLINFCIPHLGHECYFDEMNKWHQKHFGK 322 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEI----SGLAPAQ-----G-MDCSKRAAEQVAAAEV-- 219 PEYKV ++ PD F V+ + G ++ A++ AA + Sbjct: 323 IPEYKVFQKNKPDDTECFECVIRFSLPENDKGIETIQEKVGKEGSTRSLAKENAAKKAVD 382 Query: 220 -LKREGIW 226 LK G+W Sbjct: 383 FLKEIGLW 390 >gi|162447497|ref|YP_001620629.1| dsRNA-spesific ribonuclease [Acholeplasma laidlawii PG-8A] gi|161985604|gb|ABX81253.1| dsRNA-spesific ribonuclease [Acholeplasma laidlawii PG-8A] Length = 335 Score = 80.7 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 87/235 (37%), Gaps = 18/235 (7%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLL 59 M +E +GY F N++LL +A T SS + E LEF+GD ++ +I + Sbjct: 1 MKEKDIKEIEDILGYTFTNKNLLIQAFTRSSEREKNNNRDSEILEFIGDTVINYVIIQMF 60 Query: 60 FNH---------FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 N+ EGEL+ + +V + + + L F+R + + Sbjct: 61 NNNLFNADNYGLNSQYSEGELTELKSLIVENKNLAAKIDDFGLDRFLRSDNSKQ-----I 115 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAK 168 +S ++D++ES++ A+ +D E + + RA Q Sbjct: 116 PSSFKSDLLESIVGAIAIDSHYEEKEIYEIVDYLLMPRAYIGSLKFNYYLKLKQWCKIRC 175 Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + D++ ++ + +D SK + A+ +K+ Sbjct: 176 TSSNKLKENVEEIKNDNNIQYKTTLRFGNYEV-SAIDNSKIDSLFEASILAMKKI 229 >gi|170049284|ref|XP_001855187.1| endoribonuclease Dicer [Culex quinquefasciatus] gi|167871117|gb|EDS34500.1| endoribonuclease Dicer [Culex quinquefasciatus] Length = 1665 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+ + Y F +R+ L +ALTH+S ++ SY++LEF+GD +L LIS ++ + Sbjct: 1412 RIERILDYTFKDRTYLLQALTHASYPTNRITGSYQQLEFVGDAVLDFLISAYIYEQNPTM 1471 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASF 96 G+L+ ++LV+ T + + L + Sbjct: 1472 SPGQLTDLRSALVNNITLACILVRHGLHLY 1501 Score = 39.9 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 2/107 (1%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + KALT S Y ER E LGD L +S L EG L+ LVS Sbjct: 1184 IIKALTTKSAHDVY--DLERYELLGDAFLKFSVSLFLVKKHKEWHEGHLTAVKGQLVSNR 1241 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 A ++L +++ + K+ S + V+ +A++ Sbjct: 1242 NLLYCAMLINLPGMMKIHTFDPKNDWSPPLASVPHAVKQKMASINHS 1288 >gi|220905831|ref|YP_002481142.1| Ribonuclease III [Cyanothece sp. PCC 7425] gi|219862442|gb|ACL42781.1| Ribonuclease III [Cyanothece sp. PCC 7425] Length = 238 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 79/210 (37%), Gaps = 7/210 (3%) Query: 5 RYSTLEKRIGY---AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L R+G LL+ ALTH + S Q +YE+LEF GD + L ++ L Sbjct: 11 QLEKLIDRLGLVNPPPIRWDLLDLALTHPTFS--PQANYEQLEFFGDAVARLTVAQFLRQ 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--RKDVCSFMTSIQADVV 119 + GE + + LVS T + + L F+ + S + + + + Sbjct: 69 TYPDRSVGEWTAIRSVLVSDRTLATIGDSYGLERFLLMGSSAAADASGQTSRLADAMEAL 128 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + D + A+ + ++ K LQ W A PEY+V Sbjct: 129 LAALYLSTSDFRLIHPWLDRHWQPLAEAILNDPAHQNYKAALQTWTQATSRTLPEYRVQE 188 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + RF V + G+ QG S + Sbjct: 189 IQQASPEERFQAEVWVQGVLLGQGTGRSIK 218 >gi|126178317|ref|YP_001046282.1| ribonuclease III [Methanoculleus marisnigri JR1] gi|125861111|gb|ABN56300.1| RNAse III [Methanoculleus marisnigri JR1] Length = 258 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 14/208 (6%) Query: 22 LLEKALTHSSISH------SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 L ++ALTH S ++ E ERLEFLG+ +L +I+ L+ +D R Sbjct: 56 LYDRALTHRSYANHGEYPAETFEDNERLEFLGNYVLDFVIADHLYGEYDLPPGEM--NRR 113 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 + +++ R L + +R+ SI AD E+LI A+YLD G+ VA Sbjct: 114 LQVTRNTKLAEIVRRQGLG----IDGAVRRRGQPPTDSIVADAFEALIGAIYLDRGLGVA 169 Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 V +++ + R + A+ + ++GP + P + V + Sbjct: 170 RDVVLAIFEEEIAECDTHRN--YRGRLQEYVARENLGELEYAFLQTGPGNCPVWAARVTV 227 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G+ +G +K+ A +AA E L R Sbjct: 228 GGIPFGEGEARTKQGAAMIAAKEALARL 255 >gi|94469418|gb|ABF20197.1| ribonuclease III [Ehrlichia ruminantium] Length = 145 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 49/136 (36%), Positives = 76/136 (55%) Query: 89 RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 + ++L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 6 QSINLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSAT 65 Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I+ + +K Sbjct: 66 HMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLRATGHNK 125 Query: 209 RAAEQVAAAEVLKREG 224 + AEQ AA+ +L + Sbjct: 126 KLAEQKAASLMLAKIN 141 >gi|331236934|ref|XP_003331125.1| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309310115|gb|EFP86706.1| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1465 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 90/258 (34%), Gaps = 38/258 (14%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L+ LEK+IGY F + LL +ALTH S + YER E+LGD ++ + I + F Sbjct: 1099 LKCQALEKKIGYVFKEKLLLVQALTHRSANSFMTNCYEREEWLGDAVIDMWIVEHAYKRF 1158 Query: 64 DSAKEGELSVRFNSLVSAET-CSQVARELDLASFIRVSSDL------------------- 103 D A EL++ +VS + ++L L I +S+ Sbjct: 1159 DHATAEELTLARAKVVSNGSLGFLALKKLGLQEIIMHASENFEQACTEAIEAIKPFAKIE 1218 Query: 104 -------RKDVCSFMTSIQADVVESLIAALYL---DGGIEVAGTFVDKYWKQRALKSGKF 153 V I DV+E+++ A+++ T + S Sbjct: 1219 EYFSTIDNLFVVFDPPKILNDVLEAIVGAVFIDSGFNLHTAYRTLDIIFEDVIPGLSRLV 1278 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVT-------FRSGPDHDPRFTVVVEISGLAPAQGMDC 206 RD + + T G D +E+ G A G Sbjct: 1279 ARDPLSTMLRLRDQYQCAELRRISTTIREPNPNEEGKDPISVKVCRIELHGQEIASGRHK 1338 Query: 207 SK-RAAEQVAAAEVLKRE 223 S AEQ A+ E LK Sbjct: 1339 SSASVAEQRASLEALKVL 1356 Score = 37.2 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 6/82 (7%) Query: 2 SALRYSTLEKRIGYAFANRSLL--EKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 L+ + L KR+ F SLL +ALT Y+ LE LGD L L S + Sbjct: 919 DTLQATALFKRLD--FPTISLLHGIQALTPP--GGGVPWDYQTLETLGDAFLKLATSVHV 974 Query: 60 FNHFDSAKEGELSVRFNSLVSA 81 + EG++S + V Sbjct: 975 YLSHLKKGEGDMSHVRSRSVDN 996 >gi|169610828|ref|XP_001798832.1| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15] gi|160702165|gb|EAT83689.2| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15] Length = 1443 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 72/234 (30%), Gaps = 18/234 (7%) Query: 8 TLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E + Y F LL A H S SY+RLEFLGD +L + LF + Sbjct: 1164 KIEMKHPYRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYPD 1223 Query: 66 AKEGELSVRFNSLVSAET-----CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 L+ +VS + E++ A + S ADV+E Sbjct: 1224 KDPQWLTEHKTPMVSNKFLGAVQIRDYVYEVEEAEREANGAVDYWVSVSEPPKCLADVIE 1283 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--------RRDAKTELQEWAHAKFGVT 172 + +AA+++D + + T L FG + Sbjct: 1284 AFVAAIFVDSEFDFNVVQKFFDLHLKPFFLDMTLDAYENFASNHPTTRLSRLLSINFGCS 1343 Query: 173 PEYK---VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T P +V I + S R A A+ L++ Sbjct: 1344 EWRMGALETETLIPGKGKAIAAMVMIHDKVHFHSLGQSGRYARVRASHAALEKL 1397 Score = 41.8 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 12/78 (15%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +L +ALT S +YERLEFLGD L + S +F Sbjct: 946 PALALEALTKDSDNSEEHGEEKINFKSGMGPNYERLEFLGDCFLKVATSLSVFVQQPEEN 1005 Query: 68 EGELSVRFNSLVSAETCS 85 E E VR ++ + Sbjct: 1006 EFEFHVRRMLMLCNQNLM 1023 >gi|294655098|ref|XP_457193.2| DEHA2B05302p [Debaryomyces hansenii CBS767] gi|199429689|emb|CAG85188.2| DEHA2B05302p [Debaryomyces hansenii] Length = 540 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 84/222 (37%), Gaps = 17/222 (7%) Query: 17 FANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 + L + H SI ++ ERLEFLGD +L L++ ++FN F A Sbjct: 187 INDIKLCNRVFIHKSIINNKSYLHKSELMASHNERLEFLGDSVLNNLVTVIIFNKFPEAS 246 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EGELS +SLV+ T ++ + +R + + + S I AD+ E+ I AL Sbjct: 247 EGELSKIRSSLVNNVTLAEFSILYGFDKKLRSNINDQILKDSTQ-KIYADIFEAYIGALA 305 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT-------ELQEWAHAKFGVTPEYKVTFR 180 ++ + + + R+ + T + + ++ + Sbjct: 306 IERKFDYTEIQQWLTTLMDSRLNKHARQISSTEEINKDAKSELYSLIGTAAFHPQYEVVK 365 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +G F + + G S + A AA E LK Sbjct: 366 TGDGSSNPFVIRCTMGDDVLGVGTAPSNKDAGLRAAMEALKN 407 >gi|298207213|ref|YP_003715392.1| putative ribonuclease III [Croceibacter atlanticus HTCC2559] gi|83849849|gb|EAP87717.1| putative ribonuclease III [Croceibacter atlanticus HTCC2559] Length = 247 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 79/205 (38%), Gaps = 6/205 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFN 61 +S ++ +G+ N +KA TH S++ ++YERLEFLGD +L +I+ LF+ Sbjct: 19 FSAIQNLVGFKPTNLKPYKKAFTHRSLNEVDELGNAQNYERLEFLGDAMLSAIIAAHLFS 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 EG L+ +VS + +++ ++LDL S ++ + + + ++ ++ + Sbjct: 79 AVPGGNEGYLTKMRAKVVSRKHLNELGKDLDLVSLVKTNIPKTQFGANIHGNLFEALIGA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + V + + K ++ Y V + Sbjct: 139 IYLDKGYKSCKRFIHERVIEPYVDIEQLENKVISYKSLLIEYCQKT--KKEFHYDVYEDT 196 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDC 206 G F V + I A+ Sbjct: 197 GVGEMKHFAVKLRIDKKVVAKARAT 221 >gi|195023643|ref|XP_001985724.1| GH20958 [Drosophila grimshawi] gi|193901724|gb|EDW00591.1| GH20958 [Drosophila grimshawi] Length = 1713 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 1/101 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +S LE +GY F +R+ L +ALTH S ++ Y+ LEF+GD IL LIS +F H Sbjct: 1421 INHSALEHNLGYTFRDRAYLLQALTHPSNPTNRLTGCYQELEFVGDAILDFLISAYIFEH 1480 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 G+L+ ++LV+ T + + + FI + + Sbjct: 1481 KTRMTPGQLTDLRSALVNNTTLACICVRHRIHFFILAENAM 1521 >gi|134102537|ref|YP_001108198.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338] gi|291007096|ref|ZP_06565069.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338] gi|133915160|emb|CAM05273.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338] Length = 236 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 6/195 (3%) Query: 19 NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + LL ALTH S ++ ERLEFLGD +LGL+I+ L+N EG+L+ Sbjct: 9 DAELLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVITDRLYNEHPDLPEGQLAKLRA 68 Query: 77 SLVSAET---CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S+V+ ++ E L ++ + SI AD +E+++ A+YL GI+ Sbjct: 69 SVVNMHALAGVARGLGEGGLGEYLLLGRGEELTGGRDKASILADGLEAVLGAVYLQDGID 128 Query: 134 VAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 VA + + ++ ++ + + A + GPDH F+ Sbjct: 129 VARDVIHRLFEPLLTEAPQRGAGLDWKTSLQELTAAAALGVPEYRVEEQGPDHRKEFSAY 188 Query: 193 VEISGLAPAQGMDCS 207 V ++G QG + Sbjct: 189 VSVAGDTLGQGGGRT 203 >gi|300933883|ref|ZP_07149139.1| ribonuclease III [Corynebacterium resistens DSM 45100] Length = 264 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 4/202 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLL 59 + + L + G ++ L ALTH S ++ + ERLEFLGD +LGL ++ L Sbjct: 18 NKTDHEPLRQAWGVDISD-DYLCLALTHRSFANENDNLPNNERLEFLGDAVLGLTVAEQL 76 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F + E E+S +V+ + VAREL+L I + + SI +D V Sbjct: 77 YRQFPNRTESEISKMRAGVVNMYALADVARELNLGPNILLGRGEMRTGGDDKHSILSDTV 136 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+++ A+YL+ G A V + + R ++ + + Sbjct: 137 EAILGAIYLEHGFATARETVLRIFSDRITEAPTVGLTMDWKTVLVEKLSDLKLGDAVYAS 196 Query: 180 R-SGPDHDPRFTVVVEISGLAP 200 GP+H+ F + I+ Sbjct: 197 HGEGPEHNQTFYAQLAITSKRL 218 >gi|312384317|gb|EFR29067.1| hypothetical protein AND_02261 [Anopheles darlingi] Length = 1651 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 1/105 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + +E+ +GY F NR+ L +A TH++ +++ +SYE+LEFLGD +L LI+ +F Sbjct: 1399 INPEKIERTVGYKFRNRTFLLQAFTHATYTTNTLTKSYEQLEFLGDAVLDFLITLYIFER 1458 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 G+L+ ++LV+ T + V L +I S + D Sbjct: 1459 NPHMSPGQLTDLRSALVNNVTLACVLVRFRLHHYILSQSPMLTDK 1503 Score = 41.8 bits (96), Expect = 0.076, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 2/79 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 + +ALT S + ER E LGD L +S L + EG L+ +VS Sbjct: 1177 ILQALT--SKHAHDVFNLERFELLGDAFLKFSVSAFLLMRHVTWHEGYLTTCKGRMVSNR 1234 Query: 83 TCSQVARELDLASFIRVSS 101 A + L +V Sbjct: 1235 NLLYCAMQYGLPGMQKVHR 1253 >gi|167046039|gb|ABZ10551.1| dicer 2 [Nematostella vectensis] Length = 1162 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 3/109 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNH 62 + +E +GY F +R +L +ALTH+S +Y SYE+LEFLGD +L L++ + Sbjct: 935 LALVEASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYLVTRHVLQR 994 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 F G ++ +++V+ + + + + D +R S V Sbjct: 995 FPRLSPGAITDLRSAVVNNYSLACLTIQRDFHKHMRSMSMALFKVVRRF 1043 Score = 37.2 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +L+ +ALT +S + +ERLE GD + IS LL++ F + EG LS VS Sbjct: 582 TLILRALTTTSANDII--DHERLEIYGDAFIKYAISELLYSDFPNVNEGRLSFLRGLRVS 639 Query: 81 AETCSQVARELD 92 + + R Sbjct: 640 NQQLFYLGRSRG 651 >gi|94469430|gb|ABF20205.1| ribonuclease III [Ehrlichia ruminantium] gi|100271805|gb|ABF69302.1| ribonuclease III [Ehrlichia ruminantium] gi|100271811|gb|ABF69306.1| ribonuclease III [Ehrlichia ruminantium] gi|100271844|gb|ABF69328.1| ribonuclease III [Ehrlichia ruminantium] Length = 137 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 73/133 (54%) Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 +L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 1 NLGIFIIMSDGERSCGGAKNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I +K+ A Sbjct: 61 VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATGHNKKLA 120 Query: 212 EQVAAAEVLKREG 224 EQ AA+ +L++ Sbjct: 121 EQKAASLMLEKIN 133 >gi|284992411|ref|YP_003410965.1| ribonuclease III [Geodermatophilus obscurus DSM 43160] gi|284065656|gb|ADB76594.1| ribonuclease III [Geodermatophilus obscurus DSM 43160] Length = 270 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 6/189 (3%) Query: 28 THSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET-- 83 TH S ++ + + ERLEFLGD +LGL+++ L+ EG L+ S+V+ + Sbjct: 51 THRSYAYEHGGLPTNERLEFLGDSVLGLVVTDELYQRHPDLPEGRLAKLRASVVNMTSLA 110 Query: 84 -CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 ++ + L + + SI AD VE++I A+++ G++ A V + Sbjct: 111 GVARRLGDGGLGPHLLLGRGEETTGGRDKDSILADAVEAIIGAVHVGLGLDTAAAIVHRL 170 Query: 143 WKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + ++ + A+ G+ V +GPDH FT V ++G Sbjct: 171 FDPLLDQAATRGAGLDWKTSLQELGARLGLGAPTYVVEDTGPDHAKTFTAAVVLAGTVYG 230 Query: 202 QGMDCSKRA 210 +G +K+A Sbjct: 231 RGAGRTKKA 239 >gi|302308935|ref|NP_986085.2| AFR538Cp [Ashbya gossypii ATCC 10895] gi|299790864|gb|AAS53909.2| AFR538Cp [Ashbya gossypii ATCC 10895] Length = 485 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 81/236 (34%), Gaps = 25/236 (10%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++ + TH S+++ ERLEFLGD IL ++ +++N F Sbjct: 225 EIKDPAIRARVFTHRSLTNDKLYLDEAQMINSHNERLEFLGDSILNTTMTMIIYNKFPGF 284 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIR----VSSDLRKDVCSFMTSIQADVVESL 122 EG LS L++ + + + L S +R + + +V + + ADV E+ Sbjct: 285 NEGRLSQLRTKLINNDRLKEWSFMYQLPSKLRTNIEMFNGTTHEVSNGKLKLYADVFEAY 344 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF--- 179 I L + G + K + + Y + Sbjct: 345 IGGLVEEDGKKNLPRIRKWLAKLAEPVIQEEIENDVVLENTDEVDVNAKKTLYSLIGYAA 404 Query: 180 ---RSGPDHDPRF-----TVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P H P V + GL G + + A AA EVLK + + Sbjct: 405 LNLHYYPVHRPTNNEPYAIVECRVKDGLTLGTGRGKNVKIAGMRAAQEVLKNKKLL 460 >gi|52548547|gb|AAU82396.1| ribonuclease III [uncultured archaeon GZfos17C7] Length = 248 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 89/237 (37%), Gaps = 23/237 (9%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDS 65 LEK IG+ F N +LLE+A+T S S+ + +S Y+RLEFLGDR+L L+++ LF S Sbjct: 2 ELEKLIGHKFKNIALLEEAITTGSYSNEHPDSSDYQRLEFLGDRVLSLILAEELFKLSKS 61 Query: 66 AKEG--ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 A +++ L + ++ + L ++IR + + + + ++ Sbjct: 62 ASLDEGKMTFLKAELENNLRLAEYGENMGLRNYIRANEKREDIRPKVIADVFEAICGAVY 121 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA-----KFGVTPEYKVT 178 I+ F+ K+ +K ++ V Sbjct: 122 QDTKESSRIKEVKKFLLKFDILERIKDEMSSGRGFLPIRNQFENKFREIHRCNPEINFVY 181 Query: 179 FRSGPDHDPRFTVV-VEISGLAPAQGM----------DC---SKRAAEQVAAAEVLK 221 SG H ++ + I + G SK+ AE A + K Sbjct: 182 TSSGEGHQTKWKIEKCSIKDILSQTGEYVELKGIKNSGKWFSSKKDAETDAFEQAYK 238 >gi|316976669|gb|EFV59916.1| putative RNase3 domain protein [Trichinella spiralis] Length = 1460 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 5/182 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHS--SISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+RIG F + LL +A T + +RLEFLGD +L L+ + L+ H Sbjct: 783 KLTEFEQRIGVRFNHIRLLARAFTRKCVGYNFLTLGHNQRLEFLGDSVLQLVTTEYLYKH 842 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-MTSIQADVVES 121 F +EG LS+ +SLV+ T + + +L++ +FI ++ +AD+VE+ Sbjct: 843 FPDHQEGHLSLLRSSLVNNRTQAVICDDLEIPNFILQPPAFLRNEPQELRMKDKADLVEA 902 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AL++D ++ FV + R + D K++LQ+ A + Sbjct: 903 FLGALFVDHSLDYCAAFVRHCFLPRLKQFIEEQRWCDPKSQLQQCCLALRNPSGAQSTVK 962 Query: 180 RS 181 Sbjct: 963 EE 964 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 84/262 (32%), Gaps = 61/262 (23%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE------------RLEF-------- 45 ++RI Y+F SLLE A TH S + + +LEF Sbjct: 550 LRVFQQRIDYSFRKPSLLELAFTHPSYRADSGTNADHVRNVLNNCGLRQLEFGSKRTNPW 609 Query: 46 -----------------------------------LGDRILGLLISTLLFNHFDSAKEGE 70 LGD ++ L + LF F +EG Sbjct: 610 NSRKRGVSCLVNVMSRMGEKKSRASSTVNNERLEYLGDAVIEFLTTIHLFYIFPDLEEGA 669 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 L+ +V S++A ++ L F+ + M A+ E+++ A+YLDG Sbjct: 670 LAPYRTLMVQNSHLSKLAAKMGLDEFMLFAHGPDLCFEEDMRHAMANAFEAILGAVYLDG 729 Query: 131 GIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G+ VA ++ + + LQ+ T + + + Sbjct: 730 GVHVADRVFGRFLFPPDWNQALHWVWFHPPRHPLQQEYPDGDRHLIHQCPTLQKLTEFEQ 789 Query: 188 RFTVVVEISGLAPAQGMDCSKR 209 R + V + + +++ Sbjct: 790 R--IGVRFNHIRL-LARAFTRK 808 >gi|328772805|gb|EGF82843.1| hypothetical protein BATDEDRAFT_23044 [Batrachochytrium dendrobatidis JAM81] Length = 1492 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 84/237 (35%), Gaps = 34/237 (14%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E + Y F ++S+L +ALTHSS S S +Y+RLEFLGD +L +I+ L+ S+ Sbjct: 1222 RIEAVLNYTFQDKSILWEALTHSSSSFSICGLNYQRLEFLGDAVLSFIITKYLYTQLGSS 1281 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---------------------- 104 G +S + +V + + V+ L L ++RV Sbjct: 1282 SPGVISHLKSEMVCNQFLACVSIRLGLIDWLRVKKSDTVWIVDAYAQQVIEHLSQPADSI 1341 Query: 105 ----KDVCSFMTSIQADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154 + I DV E+++ A+++D E + K W + + Sbjct: 1342 QKIFWAHMTTAPKICGDVYEAILGAIFVDSKFSIEKVDEFVLNSLIKPWWDHFSQIVQDG 1401 Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV-VEISGLAPAQGMDCSKRA 210 + + + TV V+ + + KR Sbjct: 1402 KVVLQNSIVELRDLVAEHLKCSAVEYTYTHIQNTATVAIVKCHDKIIGKAIGTGKRD 1458 Score = 38.4 bits (87), Expect = 0.88, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 4/106 (3%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F N L+ L SS SYERLE LGD L + S LF S EG L+ + Sbjct: 1048 FINIETLQTVLVASS--TDLPYSYERLEILGDSFLKIHQSLHLFALNPSQDEGWLTT--S 1103 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 +V+ + R ++ + + + D ++S+ Sbjct: 1104 RMVAEQNLELCRRATEVGLQGLILTTRFSRKQWVPPAKGHDSMQSM 1149 >gi|46132992|ref|XP_389201.1| hypothetical protein FG09025.1 [Gibberella zeae PH-1] Length = 1495 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 88/258 (34%), Gaps = 48/258 (18%) Query: 14 GYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 GY F + LL+ A TH S ++ +Y+RLEFLGD ++ + I L+ +F A L+ Sbjct: 1204 GYHFKSAPLLQSAFTHPSYAYSGNVPNYQRLEFLGDALIDMTIVEYLYRNFPLADPQWLT 1263 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------------------- 111 ++ S + + +L+L + ++ Sbjct: 1264 EHKMAMASNQFLGCLCVKLNLHHHLLFNTSQFISKIRDYVAELELAEETARQEAEEDGTP 1323 Query: 112 ------------TSIQADVVESLIAALYLDGGIEV------AGTFVDKYWKQRALKSGKF 153 AD +E+L+ A+++D + F+ Y+K +L Sbjct: 1324 MRMDFWLNATTPPKAYADSIEALMGAMFVDSEFDYSVVEDFFTKFIFPYFKDMSLYDTFA 1383 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV--------VVEISGLAPAQGMD 205 + T L + + G ++ PD + V ++ + Sbjct: 1384 NKHPYTFLTKKMQQEIGCMKFCMISDTRVPDAERGMEVMKEYDIYSAFQVHERVITCHVS 1443 Query: 206 CSKRAAEQVAAAEVLKRE 223 S R + AA L+ Sbjct: 1444 KSGRYGKIAAAKGALELL 1461 Score = 43.0 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 12/91 (13%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +L +A+T S +YERLEFLGD L + + +F + Sbjct: 1006 PALALEAMTKDSDNTEDHGKQQINFQAGMGSNYERLEFLGDSFLKMATTISIFVLKPKSN 1065 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 E V L+ A + L +IR Sbjct: 1066 ECLYHVERMLLICNNNLFNTAVDCKLPEYIR 1096 >gi|195380844|ref|XP_002049171.1| GJ20897 [Drosophila virilis] gi|194143968|gb|EDW60364.1| GJ20897 [Drosophila virilis] Length = 1722 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LE+ +GY F +R+ L +ALTH S ++ Y+ LEF+GD IL LIS +F H Sbjct: 1433 INHQHLEQNLGYTFRDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFEH 1492 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 G+L+ ++LV+ T + + F Sbjct: 1493 KTRMTPGQLTDLRSALVNNTTLACICVRHRFHFF 1526 Score = 36.4 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 3/125 (2%) Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158 + + DV+E+LIAA+YLD V + L Sbjct: 1596 HVGEFNISHNVDVPKALGDVLEALIAAVYLDCRDLTTTWQVVYRLFEPELLEFSRNVPLN 1655 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 Q + H T + + +F + G + + A+ AA Sbjct: 1656 PIRQLFEHKLAKPTFSPPIMDNNQVMVTCQFIC---MDKTIKVYGFGNNGKQAKLSAAKH 1712 Query: 219 VLKRE 223 L++ Sbjct: 1713 ALQKL 1717 >gi|94469421|gb|ABF20199.1| ribonuclease III [Ehrlichia ruminantium] gi|94469427|gb|ABF20203.1| ribonuclease III [Ehrlichia ruminantium] Length = 145 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 49/136 (36%), Positives = 75/136 (55%) Query: 89 RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 + ++L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 6 QSINLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSAT 65 Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I+ +K Sbjct: 66 HMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATGHNK 125 Query: 209 RAAEQVAAAEVLKREG 224 + AEQ AA+ +L + Sbjct: 126 KLAEQKAASLMLAKIN 141 >gi|50312305|ref|XP_456185.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49645321|emb|CAG98893.1| KLLA0F24816p [Kluyveromyces lactis] Length = 478 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 75/226 (33%), Gaps = 21/226 (9%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 N + + H S+ + + ERLEFLGD IL ++T+++N F Sbjct: 197 KIKNPVIRARVFIHKSMINDKLYLTDQEIIRSHNERLEFLGDSILNTTMTTIIYNKFPHF 256 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS L++ E + + ++ + D + ADV E+ I L Sbjct: 257 DEGQLSQLRMRLINNELLKEWSFLYKFPDELKTHNVKPDDNKDGKQKLYADVFEAYIGGL 316 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF------R 180 D G + K K T Y + Sbjct: 317 VEDNGKKNLPKIRKWLAKLAEPVISKGLNSDITLENTTEVDVNAKKTLYSLIGYAALNLH 376 Query: 181 SGPDHDPRFT-----VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220 P H P T V I G +G+ + + A AA +VL Sbjct: 377 YYPVHKPTSTDPNAIVECRITGGKVLGRGVGKNIKIAGMRAAEDVL 422 >gi|323451297|gb|EGB07175.1| hypothetical protein AURANDRAFT_6264 [Aureococcus anophagefferens] Length = 227 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 72/201 (35%), Positives = 101/201 (50%), Gaps = 7/201 (3%) Query: 26 ALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 ALTH S +H+ +ERLEFLGDR+LGL+++ L +H+ EGE +R + LV E Sbjct: 21 ALTHPSTGAHASTGRFERLEFLGDRVLGLVVAEWLHDHYPDEDEGESQIRHSGLVRTEAL 80 Query: 85 SQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 VA L L +R S L + ++ AD +E+++ A+++DGG + V K W Sbjct: 81 VAVAGGLRLDGHVRAKSHGLWVSRSNSNDTMVADALEAIVGAVFVDGGYAASKRVVLKAW 140 Query: 144 KQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-- 199 + RD KT LQE A P Y+ ++GPDHDP TV Sbjct: 141 APLLAKADATPPLRDPKTRLQEHAQKHKRPLPTYETIRKTGPDHDPTITVQAHYGDRTAN 200 Query: 200 -PAQGMDCSKRAAEQVAAAEV 219 A+GM SKRAA AA + Sbjct: 201 ATAKGMHPSKRAASMAAAKIL 221 >gi|241858001|ref|XP_002416132.1| ribonuclease III, putative [Ixodes scapularis] gi|215510346|gb|EEC19799.1| ribonuclease III, putative [Ixodes scapularis] Length = 778 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 2/100 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + E+ G F + LL KA TH S ++ S +RLEFLGD +L L+ S L+ + Sbjct: 573 KLHEFEELTGIEFTHIRLLAKAFTHRSIGFNNLTLGSNQRLEFLGDTVLQLVASEYLYKY 632 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 F EG LS+ +SLV+ T + V +L + F Sbjct: 633 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMVEFTIYPYP 672 Score = 35.7 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S LF F +EG L+ ++V + + +A+ + + Sbjct: 419 SHNERLEFLGDAVVEFLSSIHLFFMFPDLEEGGLATYRAAIVQNQHLAVLAKVILHSKVF 478 Query: 98 RV 99 Sbjct: 479 TH 480 >gi|255933596|ref|XP_002558177.1| Pc12g13700 [Penicillium chrysogenum Wisconsin 54-1255] gi|211582796|emb|CAP80997.1| Pc12g13700 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1393 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 1/126 (0%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLF 60 + + + L IGY F + +LL +ALTH+S + +SY+RLEFLGD +L +++ ++ Sbjct: 1102 NLINHHRLAGLIGYTFNDPALLTEALTHASCEYDTSTQSYQRLEFLGDAVLDMVVMAVIA 1161 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 H +G +++ +S+V+A + EL + + + + Sbjct: 1162 GHPVEMDQGPMTLLKHSVVNANLLAFFCMELCAPDEPSHVTQFTNGGINLVPRYDQIHLW 1221 Query: 121 SLIAAL 126 + + Sbjct: 1222 RFLRSH 1227 Score = 36.4 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 G + + + A++ +Y+R EF GD +L +S LF + EG LS Sbjct: 937 GVGIKDIAHVITAISAP--IAQASTNYQRYEFFGDSVLKFTVSCQLFFRNGNWHEGYLSE 994 Query: 74 RFNSLVSAETCSQVARELDLASF 96 + L+ ++ A +L + SF Sbjct: 995 SRDKLIQNSRLARAALDLGIDSF 1017 >gi|302794558|ref|XP_002979043.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii] gi|300153361|gb|EFJ20000.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii] Length = 1686 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +LE ++ Y F NRSLL +A+TH+S + Y+RLEFLGD +L L+S LF Sbjct: 1492 LESLEHKLQYKFQNRSLLVEAITHAS-QPNCLLCYQRLEFLGDGVLDFLVSRHLFETHPG 1550 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 G L+ ++ V+ + +++ L ++ S + ++ Sbjct: 1551 LPPGTLTDLRSAAVNNKWFARLVVRHGLHQHLQHGSVELDCEIRKFVQNVKEKPDASC 1608 >gi|209527991|ref|ZP_03276474.1| Ribonuclease III [Arthrospira maxima CS-328] gi|209491588|gb|EDZ91960.1| Ribonuclease III [Arthrospira maxima CS-328] Length = 246 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 7/210 (3%) Query: 5 RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +R+G + + LL+ ALTH S+S Q++YE+LEF+GD ++ L+ S LL Sbjct: 15 QLEKLIERLGLSTQQKIAWQLLDLALTHPSVS--TQDNYEQLEFVGDSVVRLVASELLLE 72 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--LRKDVCSFMTSIQADVV 119 + +A GE + + LVS ++++ L ++ V + + + V Sbjct: 73 TYPNAPVGEFAAVRSILVSDRILAEISNSYGLGRYLLVGGSATRDRLGEESRLADCFEAV 132 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + + + + + R++ K LQEW + + + P+YKV Sbjct: 133 LAALYLSTNTLELIRPWLDQHLLERATDIFNDPARQNYKAALQEWTQSCYKILPQYKVNE 192 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + RFT V + G G + + Sbjct: 193 TGYAGDEARFTASVWLRGEQLGTGTGRTIK 222 >gi|213408108|ref|XP_002174825.1| dicer [Schizosaccharomyces japonicus yFS275] gi|212002872|gb|EEB08532.1| dicer [Schizosaccharomyces japonicus yFS275] Length = 1384 Score = 78.8 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 89/259 (34%), Gaps = 45/259 (17%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66 LE +GY F + LL+ A TH+S + Q +Y++LEFLGD +L ++ LF + + Sbjct: 1107 LESLVGYTFKHPGLLKIAFTHASYVKTTQTAVNYQQLEFLGDAVLDFIVVRYLFKKYQNK 1166 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------------- 111 EL+ + V ++ + V+ +L L F+ ++ ++ Sbjct: 1167 TAAELTDTKSFYVCNKSLAYVSFKLGLYDFMLQDNEDIRNAYKEYKSVIDKLQQDTKIDS 1226 Query: 112 ---------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 +D+ ES + A+YLD G + + + L + + Sbjct: 1227 NHPTPSEKFWLLIEPPKFLSDIFESFVCAVYLDSGFQFSALEPFLKFLVEELGDYEGVFN 1286 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDP------------RFTVVVEISGLAPAQGM 204 + + D + + + I Sbjct: 1287 EPPVFSQINQHLQKQGCKQYKFQCVIIDEEEKSDLLYTKAVTHHYEYSLIIHDEIVCSAK 1346 Query: 205 DCSKRAAEQVAAAEVLKRE 223 +K+ ++++ + LK Sbjct: 1347 ALNKKNSQKLLS-LALKEL 1364 >gi|213409700|ref|XP_002175620.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces japonicus yFS275] gi|212003667|gb|EEB09327.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces japonicus yFS275] Length = 377 Score = 78.8 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 79/218 (36%), Gaps = 13/218 (5%) Query: 18 ANRSLLEKALTHSSISHSYQES-----------YERLEFLGDRILGLLISTLLFNHFDSA 66 + L ++ H S ++ + ERLEFLGD + L++ F Sbjct: 154 KSSKLEKQVFMHISRAYELYPNHSNSQDLLSVHNERLEFLGDSFFNFYTTRLIYERFAEL 213 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EGELS + LV ET + AR + +S KD + AD E+ + AL Sbjct: 214 NEGELSKLRSKLVGNETAEKYARLYGFDKRLVLSVSAEKDELREAKKVIADTFEAYLGAL 273 Query: 127 YLDGG-IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 LDG E + D + + + + K EY G Sbjct: 274 ALDGQEREAYRWVRRLTEPKLRETVVDGPIDKRAKAKLYHRYKHQGFIEYAWVDGKGGSS 333 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D + V + +G A+ +++ A AA + L+ Sbjct: 334 DG-YVVACKFNGDEIARSWGANQKDAGARAAMKALEIL 370 >gi|328849595|gb|EGF98772.1| hypothetical protein MELLADRAFT_79606 [Melampsora larici-populina 98AG31] Length = 1540 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 88/259 (33%), Gaps = 42/259 (16%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + L+ +IGY F LL +ALTH S YER E+LGD I+ L I+ + F + Sbjct: 1108 TALQHKIGYEFKQPLLLMQALTHRSADSFLTNCYEREEWLGDAIVDLWITEHCYRRFSDS 1167 Query: 67 KEGELSVRFNSLVSAET-CSQVARELDLASFIRVSSDL---------------------- 103 +L+ SLV+ + ++L L I+ S Sbjct: 1168 TAAQLTFTRASLVTNASLGYLSLKKLGLHKMIQHDSRHFEKACDDALRDIESFIEVGSFY 1227 Query: 104 ----RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT 159 + I D +E+++ A+++D G+ ++ + + + + + Sbjct: 1228 DNLTNSFIVFDPPKILGDALEAIVGAIFIDCGLHLSVAYRSLDKIFEDVLPRLKQDEPRD 1287 Query: 160 ELQEWAHAKFGVTPEY---------KVTFRSG----PDHDPRFT-VVVEISGLAPAQGMD 205 + + + SG D F V + G A G Sbjct: 1288 PISLLLRTRDTYCCSELGRVTEHVVEKKETSGIRDNEDECESFRLCKVSLHGKVIATGRH 1347 Query: 206 C-SKRAAEQVAAAEVLKRE 223 S AEQ A+ + Sbjct: 1348 RTSNTVAEQRASLNAYELL 1366 Score = 39.5 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 2/95 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 A + L K+I + L ALT Y+ LE +GD L L S ++ Sbjct: 918 DASQVQALLKKIDVPHVSLDLATMALTQP--GIDVPWDYQTLETVGDAFLKLATSVHVYL 975 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 EG++S + V E + + L S+ Sbjct: 976 SHTKKGEGDMSALRSKSVDNEYLRSKSLQAGLGSY 1010 >gi|115387529|ref|XP_001211270.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114195354|gb|EAU37054.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 1344 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 3/104 (2%) Query: 2 SALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 S + +E+++GY F LL A TH S ++ Y+ LEFLGD +L ++ Sbjct: 1204 SEIDLCRRVEEKLGYHFRYPRLLHSAFTHPSYPSAWARVPCYQSLEFLGDALLDMVCVED 1263 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 LF F L+ ++VS + +A +L L + + S Sbjct: 1264 LFRRFPDRDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLSYFSS 1307 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 13/100 (13%) Query: 11 KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58 K++G + +ALT H S + ++YERLEFLGD L + S Sbjct: 1005 KKLGLEIS-LEYALEALTKDSDNTHEHRSQQVHMQRGMGKNYERLEFLGDCFLKMATSIS 1063 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 LFN E + V L+ A + +L FIR Sbjct: 1064 LFNQHPDDNEFDYHVNRMCLICNRNLFNSAVKKELYQFIR 1103 >gi|94469415|gb|ABF20195.1| ribonuclease III [Ehrlichia ruminantium] Length = 138 Score = 78.4 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 49/134 (36%), Positives = 74/134 (55%) Query: 91 LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 ++L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 1 INLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHM 60 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I+ +K+ Sbjct: 61 KVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATGHNKKL 120 Query: 211 AEQVAAAEVLKREG 224 AEQ AA+ +L + Sbjct: 121 AEQKAASLMLAKIN 134 >gi|163754630|ref|ZP_02161752.1| putative ribonuclease III [Kordia algicida OT-1] gi|161325571|gb|EDP96898.1| putative ribonuclease III [Kordia algicida OT-1] Length = 244 Score = 78.4 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 77/205 (37%), Gaps = 6/205 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ LE +G+ + + +KA TH S+ + +YERLEFLGD +L +IS LF Sbjct: 19 FAELEDILGFKTKRKKIYKKAFTHRSMNKKDAKGNSVNYERLEFLGDAMLSSVISAYLFT 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 S EG L+ + +VS E +++ R+L L ++ + ++ ++ + Sbjct: 79 EVPSGNEGYLTKMRSKIVSREHLNELGRDLKLIDLVQSRIPKDNFGENIHGNLFEALIGA 138 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + V + GK ++ +Y V + Sbjct: 139 IFLDKGYKYCERFIHYRVISPYVDIERLEGKVISYKSLLIEWCQKE--KKNFKYDVYEDT 196 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDC 206 G D F V + I + Sbjct: 197 GNDELKHFAVKLFIDNRVVGKARAT 221 >gi|254584338|ref|XP_002497737.1| ZYRO0F12342p [Zygosaccharomyces rouxii] gi|238940630|emb|CAR28804.1| ZYRO0F12342p [Zygosaccharomyces rouxii] Length = 456 Score = 78.4 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 75/230 (32%), Gaps = 24/230 (10%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++ + H S + ERLEFLGD +L +I+ +++N F Sbjct: 185 EIKDPAVRARVFIHKSTIKDKLYLTESEMIKAHNERLEFLGDSVLNTVITMIIYNKFPRY 244 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQADVVESLI 123 EG+LS +LVS E + L +R + D+ K+ +F + ADV E+ I Sbjct: 245 TEGQLSKLRMTLVSNERLKEWTFMYGLEKKLRTNFDMTKENANFQQGKRKLYADVFEAYI 304 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK----------TELQEWAHAKFGVTP 173 L D K + ++ Sbjct: 305 GGLIEDDPKHNMPRVRKWLSKLAKPVMDEVTVKDVGLESTEDLDLNAKRQLYSLIGFAAL 364 Query: 174 EYKVTFRSGPDH-DPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221 P + DP V + G G + + A AA VLK Sbjct: 365 NLHYVTVKRPTNTDPNTVVECRVGDGTVLGSGEGRNIKIAGLKAAQNVLK 414 >gi|100271817|gb|ABF69310.1| ribonuclease III [Ehrlichia ruminantium] Length = 137 Score = 78.4 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 73/133 (54%) Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 +L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 1 NLGIFIIMSDGERSCGGAKNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I +K+ A Sbjct: 61 VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATGHNKKPA 120 Query: 212 EQVAAAEVLKREG 224 EQ AA+ +L++ Sbjct: 121 EQKAASLMLEKIN 133 >gi|321469997|gb|EFX80975.1| hypothetical protein DAPPUDRAFT_303691 [Daphnia pulex] Length = 355 Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 69/231 (29%), Gaps = 18/231 (7%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ--------------ESYERLEFLGDRILGL 53 R+G F N + L ALTH S ++ E L G ++ Sbjct: 81 AFSNRLGEKF-NEATLRTALTHKSYVERETARLSDIGVDSYLQIQNNEELAVAGGALISK 139 Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 + L F E + + L S V + + L + Sbjct: 140 FTNGYLRAVFTRVPEELIMAMHDFLTSTSNLEIVGKHIGLGDLMLC--SDFPCESETYVK 197 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 VV +L + + V + D L + + P Sbjct: 198 SLKAVVAALAESSGEERARIFVQDLVVTQLYGLDINELWNPADPVGNLTDILKREGKAEP 257 Query: 174 EYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 E+++ SG + + V V A+G S A+++AA E LK+ Sbjct: 258 EFRLIKHSGQNSVLAVYYVGVYSDKNFIAEGAGESLEIAKEMAAREALKQL 308 >gi|259481091|tpe|CBF74306.1| TPA: nucleolar RNAse III, putative (AFU_orthologue; AFUA_5G04440) [Aspergillus nidulans FGSC A4] Length = 355 Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 67/216 (31%), Gaps = 11/216 (5%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + L TH ++ + +Y+RLE LGD + L+ + L++N F G +S Sbjct: 122 IKDDRLERAVFTHPGVAKDSRTTYDRLEILGDAYIELISTKLIWNKFQHIPSGRISQIRE 181 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 LV ET ++ A + + + + D+ E+ +AA+ L + Sbjct: 182 LLVKNETLAEYATQYGIDK-KASVPAELYNQPKRWIKTKGDIFEAYVAAVILSHPDGYSV 240 Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD-----HDPRFTV 191 + + +E K F + Sbjct: 241 AETWLSELWSPKLDSFEGSVSTFQAKEALAKKINGRGAKLRYIDEKESVQHQGGTQTFFI 300 Query: 192 VVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + G +K A AA + L+ Sbjct: 301 GVYFTGWGWNNKHLGSGQGSNKTIAGDRAAQQALEN 336 >gi|328770756|gb|EGF80797.1| hypothetical protein BATDEDRAFT_24696 [Batrachochytrium dendrobatidis JAM81] Length = 1641 Score = 78.0 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 1/115 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E++IGY F +++LL +ALTH S + ++RLEFLGD +L L L+ Sbjct: 1290 KQIEEQIGYTFRDKTLLWEALTH-SGTGKLGSMFQRLEFLGDAVLSYLAMQHLYKITPPL 1348 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 G LS LV + + V+ ++ L +IR + + T+ + S Sbjct: 1349 NPGGLSKLRAELVCNQFLACVSIQIGLVKYIRHTDMTMEAAIGRFTAWVQGYLAS 1403 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 54/171 (31%), Gaps = 12/171 (7%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ A T S + + SYERLE LGD L + S LF EG ++ + + Sbjct: 1118 PKLLQIATT--SSASNMGYSYERLETLGDSFLKIHQSLHLFCRNPFKNEGWMTQQRIKIE 1175 Query: 80 SAETCSQVARELDLASF----------IRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 + Q A + L F + + A +E++I A + Sbjct: 1176 KNQVLHQKALDAGLQHFILTKPLTKRNWVPPAKNIRLNQEISNKTLAGSIEAVIGACVEE 1235 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 GG+E A V + + + + Sbjct: 1236 GGVEQAALAVSRLLSDEYETDWSNYHHDLYTSIQASPSSTDYYESVVHVDP 1286 >gi|212537171|ref|XP_002148741.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224] gi|210068483|gb|EEA22574.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224] Length = 1431 Score = 78.0 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 74/222 (33%), Gaps = 22/222 (9%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +E+ +GY F S+L +ALTH S S+ +Y+RLEFLGD +L + FNH + Sbjct: 1127 KLGQMEEMLGYKFNKPSILFEALTHPS-SNDGAPTYQRLEFLGDSLLDHFVVQEFFNHPE 1185 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 E+ + ++V+A + + L +I S + + + Sbjct: 1186 KLSHQEMHLMRTAVVNAHFLGFLCQSL----YITEQRTEPVSPGKAHLSTISTDHKLYL- 1240 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + ++ +Q + A + + + D Sbjct: 1241 ----WQLMRHGASWEVMNAQQETKTRYEAWGSAVHDALNHSKTYPWAALFRINASKFFSD 1296 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 V I G + + L+R G+ Sbjct: 1297 -----MVE-SILGAIFVDSRGS------MDVSRQFLERIGVL 1326 Score = 43.8 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F+N + + A++ SS Y+R EFLGD +L L+ S L + EG LS + Sbjct: 958 FSNLAHVLTAISASSAHEEN--DYQRYEFLGDSLLKLITSIHLVVNNPLWHEGMLSAAKD 1015 Query: 77 SLVSAETCSQVARELDLASF 96 ++VS + A L L F Sbjct: 1016 TIVSNGRLYRTALNLGLDRF 1035 >gi|156044530|ref|XP_001588821.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980] gi|154694757|gb|EDN94495.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1515 Score = 78.0 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 57/109 (52%), Gaps = 1/109 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +E+ + Y F +SLL +A+TH S + +S ERLEFLGD IL +I T ++++ Sbjct: 1180 IALQPIEQILAYTFTKKSLLVEAMTHPSYING-TQSLERLEFLGDAILDNIIVTAMWSYE 1238 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 ++ + ++LV+A+ + + E+ + ++ ++ + Sbjct: 1239 TELSHFQMHLLRSALVNADFLAFLCMEMSIEQYVTDLTEGKDHQIHETH 1287 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 4/95 (4%) Query: 6 YSTLEKRI--GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L K I ++R L++ A+TH+S S +Y+RLEFLGD IL L S L + + Sbjct: 1000 VDRLCKTILKDLEISDRGLVQTAITHASYS--LTSNYQRLEFLGDSILKLCTSVQLISEY 1057 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG LS + +VS S+ A EL L +I Sbjct: 1058 PLWPEGYLSAMKDRIVSNSRSSRAAVELGLDEYII 1092 >gi|242090101|ref|XP_002440883.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor] gi|241946168|gb|EES19313.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor] Length = 377 Score = 78.0 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 94/240 (39%), Gaps = 30/240 (12%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E+ + Y F +R+LLE+ALTH S S SY+RLEF+GD LGL S L+ + Sbjct: 44 RVERLLRYQFCDRALLEEALTHQSFSDG-AFSYQRLEFVGDAALGLAFSNFLYLTNPTLG 102 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL----------------------RK 105 G LS + +S E ++VA DL +R Sbjct: 103 PGALSTLRAANISTEKLARVAVRHDLYPLLRRKCARLDLLVGQFIESVKQEVMHDLATAP 162 Query: 106 DVCS--FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 S + AD+VE++ AA+Y+D ++ + W + + + + Sbjct: 163 YGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPVITAETVDEQPVTTLH 222 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K G +++ + G V V + G G K A+ AA + L + Sbjct: 223 ELCQKHGKVAQFETWQKGGMT-----MVNVFVGGEMVGLGSSEQKVIAKLNAARDALGKL 277 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS---GLAPAQGMDCSK-RA 210 R+ K +L E K P +K+ GP H+ F V++ G G S+ + Sbjct: 302 RECKQKLTEQCIGKHWPKPIFKLEKEGGPAHERNFVCSVQVDTKTGTFVTIGDPMSRVKD 361 Query: 211 AEQVAAAEVLKRE 223 AE AA ++++ Sbjct: 362 AENSAAQKMVELL 374 >gi|251765118|sp|Q6ATG6|RTL2_ORYSJ RecName: Full=Ribonuclease 3-like protein 2; AltName: Full=Ribonuclease III-like protein 2; Short=RNase III-like protein 2 Length = 317 Score = 78.0 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 56/241 (23%), Positives = 96/241 (39%), Gaps = 30/241 (12%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +E+ + Y F + LLE+ALTH S + SY+RLEF+GD LGL S L+ + Sbjct: 38 ARVERLLRYQFRDGRLLEEALTHQSFADDAV-SYQRLEFVGDSALGLAFSNFLYLTNPTL 96 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---------------------- 104 G LS + +S E ++VA DL +R + Sbjct: 97 GPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTV 156 Query: 105 KDVCS--FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 S + AD+VE++ AA+Y+D ++ + W + + + + + Sbjct: 157 PYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDEQPVTML 216 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K G ++K + G V V ++G G K A+ AA + ++ Sbjct: 217 HELCQKHGKMAQFKTWQKGGMT-----VVNVFVAGELVGIGSSEQKVIAKLNAARDATRK 271 Query: 223 E 223 Sbjct: 272 L 272 >gi|86608239|ref|YP_477001.1| ribonuclease III [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556781|gb|ABD01738.1| ribonuclease III [Synechococcus sp. JA-2-3B'a(2-13)] Length = 240 Score = 78.0 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 53/216 (24%), Positives = 85/216 (39%), Gaps = 18/216 (8%) Query: 6 YSTLEKRIGYAFANRSLLEK--------ALTHSSISHSYQESYERLEFLGDRILGLLIST 57 L R+G F + +LLE+ AL H S+ + + +RLE LGD +L +L++ Sbjct: 12 LEHLLARLG--FRDPALLEQLRWDLLDQALIHPSL--DGRRNNDRLELLGDSVLRILVTE 67 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 LF + GEL+ + L S +++A L ++ V S + D+ + Sbjct: 68 FLFQSYPHLSVGELTAIRSDLTSDAYLAELADLHGLDRYLEVGSSSQNDLAGRGRRLADA 127 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQR----ALKSGKFRRDAKTELQEWAHAKFGVTP 173 L A G + RR+ K LQE +G P Sbjct: 128 FEALLGAFYLSWGIYTLPRLHPWLDPYLHRRVEQWFQDPTRRNPKAALQELTQRLWGSLP 187 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 EY++ +H P FT+ V G +G SK+ Sbjct: 188 EYRLVAAQ--EHPPHFTMEVWGQGRCWGRGEGRSKK 221 >gi|225447097|ref|XP_002270948.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 236 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 1/97 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+ +GY+F N+ LLE+A TH+S Q SYERLEF+GD +L LLI+ F + Sbjct: 30 LEGVEQILGYSFTNKRLLEEAYTHASCQK-NQFSYERLEFMGDSVLSLLITKEQFFLYPD 88 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 + G L+ ++ V E ++VA + L F+R Sbjct: 89 LQPGRLTRLRSANVDKEKLARVALKHGLHRFLRHKKP 125 >gi|322702026|gb|EFY93774.1| Dicer-like protein 1 [Metarhizium acridum CQMa 102] Length = 1524 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 1/102 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDS 65 +E IGY F + LL A H S + + +Y+RLEFLGD +L + I LF + Sbjct: 1246 DKVEGSIGYKFRSPKLLRSAFKHPSYPYEPELPNYQRLEFLGDALLDVAIVDFLFRRYPL 1305 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 A L+ ++ S S + EL L I + Sbjct: 1306 ADPQWLTEHKMAMASNHFFSFLCVELGLHRHILSTGSSMMGH 1347 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%) Query: 22 LLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 L +ALT S + ++YERLEFLGD L + + LF + E E V L Sbjct: 1067 LALEALT-KSEEDVDVQSNKNYERLEFLGDAFLKMATTISLFTLIPNKNEFEYHVERMIL 1125 Query: 79 VSAETCSQVARELDLASFIR 98 + + A + L ++R Sbjct: 1126 ICNKNLFNHAVDRGLQEYVR 1145 >gi|195124758|ref|XP_002006854.1| GI21295 [Drosophila mojavensis] gi|193911922|gb|EDW10789.1| GI21295 [Drosophila mojavensis] Length = 1728 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + LEK +GY F +R+ L +ALTH S ++ Y+ LEF+GD IL LIS +F H Sbjct: 1438 INHQYLEKNLGYTFCDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFEH 1497 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 G+L+ ++LV+ T + + F Sbjct: 1498 KTRMTPGQLTDLRSALVNNTTLACICVRHRFHFF 1531 Score = 36.8 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 11/108 (10%), Positives = 27/108 (25%), Gaps = 17/108 (15%) Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 + + +Y E+ + + + VT ++ Sbjct: 1633 CRDLNTTWQVVYKLFEPELLEFSRNVPLNPIRQLFEHKLAKPTFSSPVMDNNQVMVTCQF 1692 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + T+ V G + + A+ AA L++ Sbjct: 1693 ICMDK---------TIKVY--------GFGNNGKQAKLSAAKHALQKL 1723 >gi|50290469|ref|XP_447666.1| hypothetical protein [Candida glabrata CBS 138] gi|49526976|emb|CAG60603.1| unnamed protein product [Candida glabrata] Length = 734 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 77/232 (33%), Gaps = 25/232 (10%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 N ++ + H S + SYERLEFLGD ++ +++T+++ F + Sbjct: 423 EIKNEAIKARVFIHQSALSGQSYLTEEEKIKNSYERLEFLGDSVINSIMTTIIYKSFPNY 482 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASF---IRVSSDLRKDVCSFMTSIQADVVESLI 123 G+++ LVS + A L + + + S + I AD+ E+ + Sbjct: 483 DAGQMTRLRVLLVSNRRLEKWAYLYGLQKHLLIRKSILNEMLNSGSKVYKIYADLFEAYV 542 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG- 182 L D D + T K+ G Sbjct: 543 GGLVEDDPTGNMPKIRDWLSTLAEEAIKTISDKNALPGTDNNINMNAKTQLEKLLAPVGL 602 Query: 183 ----------PDHDPRFTV-VVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 FTV + +G G + + AEQ+AA +L++ Sbjct: 603 EAQYVITNRRSSKKSPFTVIECRVANGQVTGIGKGRNYKIAEQIAAGNILEK 654 >gi|887620|emb|CAA90210.1| unknown [Saccharomyces cerevisiae] Length = 362 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 24/230 (10%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++ + H S ERLEFLGD IL +++ +++N F Sbjct: 95 EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 154 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQADVVESLI 123 EG+LS +LVS E Q + + ++ + DL+ + +F + ADV E+ I Sbjct: 155 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 214 Query: 124 AALYLDGGIEVAGTFVDKYWK----------QRALKSGKFRRDAKTELQEWAHAKFGVTP 173 L D K + + K + ++ + Sbjct: 215 GGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLIGYASL 274 Query: 174 EYKVTFRSGP-DHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221 P DP V + G G+ + + A AA L+ Sbjct: 275 RLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 324 >gi|6323895|ref|NP_013966.1| Rnt1p [Saccharomyces cerevisiae S288c] gi|2500557|sp|Q02555|RNT1_YEAST RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|1185416|gb|AAB04172.1| Rnt1p [Saccharomyces cerevisiae] gi|151945944|gb|EDN64176.1| conserved protein [Saccharomyces cerevisiae YJM789] gi|190408465|gb|EDV11730.1| ribonuclease III [Saccharomyces cerevisiae RM11-1a] gi|256271587|gb|EEU06629.1| Rnt1p [Saccharomyces cerevisiae JAY291] gi|285814244|tpg|DAA10139.1| TPA: Rnt1p [Saccharomyces cerevisiae S288c] gi|323303453|gb|EGA57248.1| Rnt1p [Saccharomyces cerevisiae FostersB] gi|323332152|gb|EGA73563.1| Rnt1p [Saccharomyces cerevisiae AWRI796] Length = 471 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 24/230 (10%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++ + H S ERLEFLGD IL +++ +++N F Sbjct: 204 EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 263 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQADVVESLI 123 EG+LS +LVS E Q + + ++ + DL+ + +F + ADV E+ I Sbjct: 264 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 323 Query: 124 AALYLDGGIEVAGTFVDKYWK----------QRALKSGKFRRDAKTELQEWAHAKFGVTP 173 L D K + + K + ++ + Sbjct: 324 GGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLIGYASL 383 Query: 174 EYKVTFRSGP-DHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221 P DP V + G G+ + + A AA L+ Sbjct: 384 RLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 433 >gi|169608916|ref|XP_001797877.1| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15] gi|160701743|gb|EAT85008.2| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15] Length = 1017 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 1/113 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNH 62 + LE IGY F + LL +ALTH+S S + SYERLEFLGD +L +IS L H Sbjct: 710 MGLDVLETLIGYTFKKKPLLLEALTHASFSGPHVHCSYERLEFLGDAVLDYIISKRLHAH 769 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 ++ + V+A + E + + +R + Sbjct: 770 SPELSHQKMHAIRTATVNASFLAFRLFETTIDEETINKTSMRPESQKRAIWQF 822 Score = 51.5 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL +AL S + ++Y+RLEFLGD IL + + L E L+ + +VS Sbjct: 548 LLTRAL--KSSAADGNDNYQRLEFLGDCILKFIATVHLMAANPKWPESHLTAKKGRIVSN 605 Query: 82 ETCSQVARELDLASFIR 98 ++ L F+ Sbjct: 606 GFLARATIAAGLDRFMI 622 >gi|158705946|sp|Q0UL22|DCL2_PHANO RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease DCL2; Includes: RecName: Full=ATP-dependent helicase DCL2 Length = 1399 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 1/113 (0%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNH 62 + LE IGY F + LL +ALTH+S S + SYERLEFLGD +L +IS L H Sbjct: 1092 MGLDVLETLIGYTFKKKPLLLEALTHASFSGPHVHCSYERLEFLGDAVLDYIISKRLHAH 1151 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 ++ + V+A + E + + +R + Sbjct: 1152 SPELSHQKMHAIRTATVNASFLAFRLFETTIDEETINKTSMRPESQKRAIWQF 1204 Score = 51.5 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL +AL S + ++Y+RLEFLGD IL + + L E L+ + +VS Sbjct: 930 LLTRAL--KSSAADGNDNYQRLEFLGDCILKFIATVHLMAANPKWPESHLTAKKGRIVSN 987 Query: 82 ETCSQVARELDLASFIR 98 ++ L F+ Sbjct: 988 GFLARATIAAGLDRFMI 1004 >gi|323347050|gb|EGA81326.1| Rnt1p [Saccharomyces cerevisiae Lalvin QA23] Length = 441 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 24/230 (10%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++ + H S ERLEFLGD IL +++ +++N F Sbjct: 204 EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 263 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQADVVESLI 123 EG+LS +LVS E Q + + ++ + DL+ + +F + ADV E+ I Sbjct: 264 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 323 Query: 124 AALYLDGGIEVAGTFVDKYWK----------QRALKSGKFRRDAKTELQEWAHAKFGVTP 173 L D K + + K + ++ + Sbjct: 324 GGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLIGYASL 383 Query: 174 EYKVTFRSGP-DHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221 P DP V + G G+ + + A AA L+ Sbjct: 384 RLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 433 >gi|100271808|gb|ABF69304.1| ribonuclease III [Ehrlichia ruminantium] gi|100271814|gb|ABF69308.1| ribonuclease III [Ehrlichia ruminantium] gi|100271820|gb|ABF69312.1| ribonuclease III [Ehrlichia ruminantium] gi|100271823|gb|ABF69314.1| ribonuclease III [Ehrlichia ruminantium] gi|100271826|gb|ABF69316.1| ribonuclease III [Ehrlichia ruminantium] gi|100271829|gb|ABF69318.1| ribonuclease III [Ehrlichia ruminantium] gi|100271835|gb|ABF69322.1| ribonuclease III [Ehrlichia ruminantium] gi|100271847|gb|ABF69330.1| ribonuclease III [Ehrlichia ruminantium] gi|108951328|gb|ABG25048.1| ribonuclease III [Ehrlichia ruminantium] gi|108951331|gb|ABG25050.1| ribonuclease III [Ehrlichia ruminantium] Length = 137 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 73/133 (54%) Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 +L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 1 NLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I+ +K+ A Sbjct: 61 VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATGHNKKLA 120 Query: 212 EQVAAAEVLKREG 224 EQ AA+ +L + Sbjct: 121 EQKAASLMLAKIN 133 >gi|37522217|ref|NP_925594.1| ribonuclease III [Gloeobacter violaceus PCC 7421] gi|35213217|dbj|BAC90589.1| ribonuclease III [Gloeobacter violaceus PCC 7421] Length = 242 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 63/204 (30%), Gaps = 3/204 (1%) Query: 21 SLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL +AL H S S E +RLEFLGD IL LL + L+ GE++ + LV Sbjct: 32 ELLHRALIHPSWSAQEGGEDNDRLEFLGDEILRLLAAEFLYRADPELTVGEMTAVRSVLV 91 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S +++A DL F+ + + ++ Sbjct: 92 SDVALAELAEGYDLGEFLV--VGRSASGDERGRITRLADGFEAVIGALYLSTGDLGLIRP 149 Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 L + + ++ D P F V G Sbjct: 150 WLLPHLAHLAESVMADPTRGNHKSALQELTQKLAAGELPEYRLVDPGPPFRYEVWALGRL 209 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ A+Q AA Sbjct: 210 WGSGEGPSKKLAQQRAARGAYAAL 233 >gi|320541047|ref|ZP_08040477.1| RNase III [Serratia symbiotica str. Tucson] gi|320028891|gb|EFW11140.1| RNase III [Serratia symbiotica str. Tucson] Length = 172 Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 3/167 (1%) Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + F EG++S +LV T +++ARE DL +R+ K S SI AD V Sbjct: 3 YQRFPHIDEGDMSRMRATLVRGHTLAEMAREFDLGECLRLGPGELKSGGSRRESILADTV 62 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 E+LI ++LD ++ + +++ R + G ++D KT LQE P Y V Sbjct: 63 EALIGGVFLDSDMQRVERLILDWYRSRLDEISPGDKQKDPKTRLQELLQGHHLPLPSYLV 122 Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223 G HD FT+ ++SGL P G+ S+R AEQ AA + LK+ Sbjct: 123 VQVRGEAHDQEFTIHCQVSGLNEPVMGIGSSRRKAEQAAAEQTLKKL 169 >gi|259148825|emb|CAY82070.1| Rnt1p [Saccharomyces cerevisiae EC1118] Length = 471 Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 24/230 (10%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++ + H S ERLEFLGD IL +++ +++N F Sbjct: 204 EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 263 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQADVVESLI 123 EG+LS +LVS E Q + + ++ + DL+ + +F + ADV E+ I Sbjct: 264 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 323 Query: 124 AALYLDGGIEVAGTFVDKYWK----------QRALKSGKFRRDAKTELQEWAHAKFGVTP 173 L D K + + K + ++ + Sbjct: 324 GGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLIGYASL 383 Query: 174 EYKVTFRSGP-DHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221 P DP V + G G+ + + A AA L+ Sbjct: 384 RLHYVTVKNPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 433 >gi|170091728|ref|XP_001877086.1| predicted protein [Laccaria bicolor S238N-H82] gi|164648579|gb|EDR12822.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1358 Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 47/93 (50%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S +E+ IG+ F LL +ALTHSS+ SY RLEF+GD IL ++ +FN + Sbjct: 1075 SAIERIIGHNFQRPHLLAQALTHSSMQGHESASYGRLEFIGDAILDFMVIQHIFNRDQTL 1134 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G L++ ++VS + V L + Sbjct: 1135 SPGALTLLKGAMVSNSALAAVCVSSGLRKHLLF 1167 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 64/218 (29%), Gaps = 27/218 (12%) Query: 1 MSALRYSTLEKRIGYAFAN----RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56 M + + K + F + LL +L S Y +YERLE LGD L L + Sbjct: 808 MRRIDDLLIVKELNARFFDHAIREDLLHVSLCAPSAGLEY--NYERLELLGDAFLKYLCT 865 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 +F + EG L + L+S ++ + + + L +I+ + Sbjct: 866 IYVFVAEPTQNEGSLHIARQKLISNKSLLENSNLIGLPVYIQ----AKPFPAKSWQPPNF 921 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + + E + + G F R + + V E Sbjct: 922 RLTPRTSKMIVDKSDEEAFTPMILGSEMSSDVVEGAFTRTSTACNPHVSGVDLAVINETS 981 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 P + +K+ A Q Sbjct: 982 DVNERDPP--------------FYGK---KNKKKARQD 1002 >gi|223944141|gb|ACN26154.1| unknown [Zea mays] Length = 206 Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58 MSA + +E +GY F ++SL+E ALTH S + ++YERLE+LGD +L L+S Sbjct: 43 MSAKDVTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSRE 102 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 +F + + + G L+ + V E ++VA L F+R + +D + Sbjct: 103 VFRTYRTLQPGPLTRLRAANVDTEKLARVAVHRGLHRFLRHKAPKLQDQKKCANIQFTQM 162 >gi|305354766|emb|CBL30926.1| Dicer protein [Echinococcus multilocularis] Length = 1981 Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 54/280 (19%), Positives = 88/280 (31%), Gaps = 64/280 (22%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----------------SYERLEFLG 47 R+S LE+ IGY F NR LL +A THS+ + YERLEFLG Sbjct: 1695 RFSKLEEIIGYTFKNRRLLIEAFTHSTCRDLHGPPSDDDGGFHGSVTSISGGYERLEFLG 1754 Query: 48 DRILGLLISTLLFNHFDSA--KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 D +L ++ LF +A G L+ ++LV+ +A L +F+R ++ Sbjct: 1755 DAVLDYAVTRFLFTTDATARLSPGALTDLRSALVNNVVFGALAVRHGLHAFLRAAAPPLT 1814 Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEV------------------------------- 134 + DVV + L Sbjct: 1815 RTMALFLRHHHDVVRGDLDVLIAPEVNACRENKGATASQAEGDRANEEVEVPKALGDVFE 1874 Query: 135 ------------AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + + + + + + + Sbjct: 1875 SLAGAVFLDSGLCLNTLWRVFFPLLRERIERYSTCVAKSPVRRLLELCPERVKFERPMVR 1934 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 PD R VVV ++G+ G+ + R A+ AA +R Sbjct: 1935 PDGKMR--VVVRVAGIGRYVGVGRTYRLAKSAAADLAYRR 1972 >gi|302318908|ref|NP_001180543.1| dicer-2 [Bombyx mori] gi|300669733|dbj|BAJ11655.1| DICER-2 [Bombyx mori] Length = 1677 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 1/107 (0%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +EK + Y F + + L AL+HSS + SYERLEFLGD I+ L+++ +F + Sbjct: 1424 TDVEKILNYTFKDSTFLLNALSHSSYIRNRLTSSYERLEFLGDAIIDFLVTSHIFENCRE 1483 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 K GE++ ++LV+ T + +L L ++ + + Sbjct: 1484 LKPGEMTDLRSALVNNVTFAAYTVKLGLHKYLCSELNPSLEKAIMKF 1530 >gi|309800535|ref|ZP_07694686.1| ribonuclease III [Streptococcus infantis SK1302] gi|308115846|gb|EFO53371.1| ribonuclease III [Streptococcus infantis SK1302] Length = 115 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 1/109 (0%) Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTP 173 D E+ + AL LD I+ TF+ + + + +D KT LQE V Sbjct: 1 MGDAFEAFLGALLLDKDIKTVKTFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDI 60 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y+V GP HD F V V + G + G SK+ AEQ AA +++ Sbjct: 61 RYQVISEIGPAHDKMFEVEVLVEGQSLGSGKGRSKKLAEQEAAKNAVEK 109 >gi|321452752|gb|EFX64071.1| hypothetical protein DAPPUDRAFT_118569 [Daphnia pulex] Length = 344 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 65/241 (26%), Gaps = 22/241 (9%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLL 59 + + LE++IGY F +++LL +ALTHSS + E LE LGD L L Sbjct: 61 KSFSMTALEEKIGYEFKDKTLLGRALTHSSANVTKCPSRDGENLEVLGDASLDLNPRYNQ 120 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + + I + Sbjct: 121 GQLSVLKSAITCNDTLAVIAVRSGLHLLLQHRLPEKQIEELRSFVDHQNKNQHLFSHEKE 180 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--------------------RALKSGKFRRDAKT 159 +I++ D ++ V + G T Sbjct: 181 LVIISSSEGDRAFDIDYPKVYADAFESLIGALRIDCEREDKVIRKVVLNLMGDVIAKFHT 240 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + + D V++E+ G S ++A+ AA Sbjct: 241 NIPVCPLQRVNQNKIRTEFKEEKNLPDGTVNVILEVKNFQSFHGSGQSLKSAKTAAARLA 300 Query: 220 L 220 + Sbjct: 301 I 301 >gi|302896162|ref|XP_003046961.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI 77-13-4] gi|256727889|gb|EEU41248.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI 77-13-4] Length = 1452 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 71/257 (27%), Gaps = 47/257 (18%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 GY F +LL A H S + +Y+RLEFLGD +L + I LF F A L+ Sbjct: 1162 GYRFKWPALLRSAFKHPSWPYDPVPNYQRLEFLGDALLDMAIVDNLFQRFPQADPQWLTE 1221 Query: 74 RFNSLVSAETCSQVARELDLASF---------------------------------IRVS 100 ++ S + + +LDL Sbjct: 1222 HKMAMASNQFLGCLCVKLDLHKHLTSTTSSLIGQISSYASELELAEEDARQEAKANKTAM 1281 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 S ADV+E+L+ A+++D + D+ Sbjct: 1282 RKDFWLRASAPPKAFADVMEALVGAMFVDAKYDYTVVRNFFTRFIEPYFEDMALYDSFAN 1341 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRF-------------TVVVE-ISGLAPAQGMDC 206 + + + T + V V + A Sbjct: 1342 KHPVTYLSKKMQQDLGCTNWRVSAENVPCGVEEGIAALTESDVVAVFMVHQKVVANATAK 1401 Query: 207 SKRAAEQVAAAEVLKRE 223 S R A+ A L Sbjct: 1402 SGRYAKIAVAKRALAML 1418 Score = 43.0 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 12/89 (13%) Query: 22 LLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 L +A+T S +YERLEFLGD L + + LF + E Sbjct: 966 LALEAMTKDSDNSGEHDEEQVNFQPGMGSNYERLEFLGDSFLKMATTISLFTLIPESDEC 1025 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIR 98 V L+ + A + L +IR Sbjct: 1026 GYHVERMILICNQNLFNHAVDRKLHEYIR 1054 >gi|242809985|ref|XP_002485488.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500] gi|218716113|gb|EED15535.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500] Length = 1420 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +E+ +GY F S+L +ALTH ++ +Y+RLEFLGD +L + FNH + Sbjct: 1123 KLGQMEEILGYKFNKPSILFEALTHP-CANDGAPTYQRLEFLGDSLLDHFVVQEFFNHPE 1181 Query: 65 SAKEGELSVRFNSLVSAETCSQVAREL 91 ++ + ++V+A + + L Sbjct: 1182 KISHQDMHLMRTAVVNAHFLGFLCQSL 1208 Score = 44.1 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F N S + A++ SS + Y+R EFLGD +L L+ S L EG LS Sbjct: 953 KFENLSHVLTAISASSAQEEH--DYQRYEFLGDSLLKLITSIHLVVKKPLWHEGLLSAEK 1010 Query: 76 NSLVSAETCSQVARELDLASF 96 +++VS + A +L L F Sbjct: 1011 DTIVSNGRLHRTALDLGLDKF 1031 >gi|109390419|gb|ABG33778.1| double-strand-specific Pac1 ribonuclease [Schizosaccharomyces pombe] Length = 363 Score = 76.5 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 13/215 (6%) Query: 21 SLLEKALTHSSISHSYQES-----------YERLEFLGDRILGLLISTLLFNHFDSAKEG 69 L + AL H S ++ + ERLEFLGD L + ++F+ F E Sbjct: 141 KLKKHALMHISRAYEIYPNQSNPNELLDIHNERLEFLGDSFFNLFTTRIIFSKFPQMDEE 200 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 LS V E+ + AR + +S KD + AD E+ + AL LD Sbjct: 201 SLSKLRAKFVGNESADKFARLYGFDKTLVLSYSAEKDQLRKSQKVIADTFEAYLGALILD 260 Query: 130 GGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G E A +V + + + + + D + + + EY+ +G + Sbjct: 261 GQEETAFQWVSRLLQPKIANITVQRPIDKLAKSKLFHKYSTLGHIEYRWVDGAGGSAEG- 319 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + +G A+ +++ A AA + L+ Sbjct: 320 YVIACIFNGKEVARAWGANQKDAGSRAAMQALEVL 354 >gi|255524265|ref|ZP_05391224.1| Ribonuclease III [Clostridium carboxidivorans P7] gi|255512090|gb|EET88371.1| Ribonuclease III [Clostridium carboxidivorans P7] Length = 152 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 2/147 (1%) Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 + + ++A++ DL +IR+S SI AD VE++IAA+Y+D G E A F Sbjct: 1 MCENSLYEIAKKWDLGKYIRMSKGEELTGGRERVSILADCVEAIIAAIYIDAGFEKAKGF 60 Query: 139 VDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 V +K K D KT+LQE V +Y + GP H +F V ++ Sbjct: 61 VLTNFKDTIEKAIKNKIILDYKTKLQEVMQKNGDVDIQYDLMKYEGPPHRRKFYTQVSVN 120 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ +EQ AA + LK Sbjct: 121 NKVLGNGTGYSKKESEQSAAKKALKGL 147 >gi|302693114|ref|XP_003036236.1| hypothetical protein SCHCODRAFT_31237 [Schizophyllum commune H4-8] gi|300109932|gb|EFJ01334.1| hypothetical protein SCHCODRAFT_31237 [Schizophyllum commune H4-8] Length = 1342 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 +S L+ ++GY F + LL +ALTHSS + SYERLEFLGD ++ L + L+ F Sbjct: 1086 FSELQAKLGYTFRDGGLLCEALTHSSFASLDSYGSYERLEFLGDAVINLAVVDYLYRKFP 1145 Query: 65 SAKEGELSVRFNSLVSAET 83 A +LS+ V + Sbjct: 1146 DANSDQLSLPRARAVCNQA 1164 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 +G + R LL +ALT + +RLE LGD +L L + LFN + EG+L+ Sbjct: 919 LGLPYIERDLLIQALTLP--CAGMPFNNQRLETLGDAVLELSTTVHLFNKYPHRHEGQLT 976 Query: 73 VRFNSLVSAETCSQVARELDLASF 96 +S + ARE+ L F Sbjct: 977 PLRQICISNKCLLTRAREVQLERF 1000 >gi|251764789|sp|Q7XD96|DCL3B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3b; AltName: Full=Dicer-like protein 3b; Short=OsDCL3b Length = 1637 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 1/99 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHF 63 LE ++ Y F+ + LL +A+TH S+ Y+RLEFLGD +L LL++ L+ Sbjct: 1240 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 1299 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 GEL+ ++LVS E +Q ++ S ++ S Sbjct: 1300 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSG 1338 Score = 41.5 bits (95), Expect = 0.081, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 11/186 (5%) Query: 7 STLEKRIGYAFANR--SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S L + IGY + +L+ +A+T ++ S ERLE LGD +L ++ LF + Sbjct: 1032 SQLRREIGYN-QHIPVTLILEAIT--TLRCCETFSLERLELLGDSVLKYVVGCDLFLRYP 1088 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS------FMTSIQADV 118 EG+LS + V T + L ++R ++ + + + Sbjct: 1089 MKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGI 1148 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + + + + + + K D L + G+ V Sbjct: 1149 ETAFVPSHRRYIRDDPSFFVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALWVM 1208 Query: 179 FRSGPD 184 G D Sbjct: 1209 RWFGID 1214 >gi|222613035|gb|EEE51167.1| hypothetical protein OsJ_31945 [Oryza sativa Japonica Group] Length = 1570 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 1/99 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHF 63 LE ++ Y F+ + LL +A+TH S+ Y+RLEFLGD +L LL++ L+ Sbjct: 1172 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 1231 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 GEL+ ++LVS E +Q ++ S ++ S Sbjct: 1232 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSG 1270 Score = 41.5 bits (95), Expect = 0.081, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 11/186 (5%) Query: 7 STLEKRIGYAFANR--SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S L + IGY + +L+ +A+T ++ S ERLE LGD +L ++ LF + Sbjct: 964 SQLRREIGYN-QHIPVTLILEAIT--TLRCCETFSLERLELLGDSVLKYVVGCDLFLRYP 1020 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS------FMTSIQADV 118 EG+LS + V T + L ++R ++ + + + Sbjct: 1021 MKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGI 1080 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + + + + + + K D L + G+ V Sbjct: 1081 ETAFVPSHRRYIRDDPSFFVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALWVM 1140 Query: 179 FRSGPD 184 G D Sbjct: 1141 RWFGID 1146 >gi|218184775|gb|EEC67202.1| hypothetical protein OsI_34085 [Oryza sativa Indica Group] Length = 1093 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 1/99 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHF 63 LE ++ Y F+ + LL +A+TH S+ Y+RLEFLGD +L LL++ L+ Sbjct: 726 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 785 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 GEL+ ++LVS E +Q ++ S ++ S Sbjct: 786 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSG 824 Score = 35.7 bits (80), Expect = 4.5, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 56/176 (31%), Gaps = 13/176 (7%) Query: 20 RSLLE-----KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 LL +A+T ++ S ERLE LGD +L ++ LF + EG+LS Sbjct: 527 PELLIHLDILEAIT--TLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDM 584 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS------FMTSIQADVVESLIAALYL 128 + V T + L ++R ++ + + + + + + Sbjct: 585 RSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIETAFVPSHRR 644 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + K D L + G+ V G D Sbjct: 645 YIRDDPSFVVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALWVMRWFGID 700 >gi|78099743|gb|ABB20894.1| dicer-like protein [Oryza sativa Indica Group] Length = 1116 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 1/99 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHF 63 LE ++ Y F+ + LL +A+TH S+ Y+RLEFLGD +L LL++ L+ Sbjct: 720 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 779 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 GEL+ ++LVS E +Q ++ S ++ S Sbjct: 780 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSG 818 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 11/186 (5%) Query: 7 STLEKRIGYAFANR--SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S L + IGY + +L+ +A+T ++ S ERLE LGD +L ++ LF + Sbjct: 512 SQLRREIGYN-QHIPVTLILEAIT--TLRCCETFSLERLELLGDSVLKYVVGCDLFLRYP 568 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS------FMTSIQADV 118 EG+LS + V T + L ++R ++ + + + Sbjct: 569 MKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGI 628 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + + + + + + K D L + G+ V Sbjct: 629 ETAFVPSHRRYIRDDPSFVVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALWVM 688 Query: 179 FRSGPD 184 G D Sbjct: 689 RWFGID 694 >gi|297610684|ref|NP_001064898.2| Os10g0485600 [Oryza sativa Japonica Group] gi|18087887|gb|AAL59041.1|AC087182_24 putative RNA helicase [Oryza sativa Japonica Group] gi|31432753|gb|AAP54346.1| Type III restriction enzyme, res subunit family protein, expressed [Oryza sativa Japonica Group] gi|255679506|dbj|BAF26812.2| Os10g0485600 [Oryza sativa Japonica Group] Length = 1458 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 1/99 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHF 63 LE ++ Y F+ + LL +A+TH S+ Y+RLEFLGD +L LL++ L+ Sbjct: 1103 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 1162 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 GEL+ ++LVS E +Q ++ S ++ S Sbjct: 1163 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSG 1201 Score = 36.4 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 56/176 (31%), Gaps = 13/176 (7%) Query: 20 RSLLE-----KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 LL +A+T ++ S ERLE LGD +L ++ LF + EG+LS Sbjct: 904 PELLIHLDILEAIT--TLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDM 961 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS------FMTSIQADVVESLIAALYL 128 + V T + L ++R ++ + + + + + + Sbjct: 962 RSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIETAFVPSHRR 1021 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + + K D L + G+ V G D Sbjct: 1022 YIRDDPSFFVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALWVMRWFGID 1077 >gi|330982830|gb|EGH80933.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 49 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGL 53 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL Sbjct: 1 MSVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNF 49 >gi|330889503|gb|EGH22164.1| ribonuclease III [Pseudomonas syringae pv. mori str. 301020] Length = 52 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGL 53 ++ S LE+++GY F ++ L+ ALTH S + + ERLEFLGD IL Sbjct: 1 MSVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNF 49 >gi|256077012|ref|XP_002574802.1| ribonuclease III [Schistosoma mansoni] gi|238660017|emb|CAZ31035.1| ribonuclease III, putative [Schistosoma mansoni] Length = 907 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 1/95 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFN 61 R+ L++++GY F LL +A+TH SSI+ Y +Y+RLEFLGD ILG +IS LF Sbjct: 681 NQRFFQLQEKLGYYFKGIELLAEAMTHQSSINKQYWGNYQRLEFLGDSILGHIISNYLFQ 740 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 ++ G L+ +++VS + V E D+ F Sbjct: 741 KCPNSSPGALTTARSTVVSNINLANVVVEHDIYPF 775 >gi|302901921|ref|XP_003048541.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI 77-13-4] gi|256729474|gb|EEU42828.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI 77-13-4] Length = 1381 Score = 76.1 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ IGY+F +SLL +A+TH S + ++Q SYE+LEFLGD +L +I T +FN Sbjct: 1092 LEPLEELIGYSFRKKSLLIEAVTHGSYAGDTHQRSYEQLEFLGDAVLDYIIVTKVFNVKP 1151 Query: 65 SAKEGELSVRFNSLVSAET 83 +L + ++V+ E Sbjct: 1152 PLPHSDLHLIKTAMVNGEF 1170 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 2/81 (2%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 + L+ +A++ S YERLEFLGD IL + EG L Sbjct: 914 NINDLQLVLEAISSRSAHEPV--DYERLEFLGDSILKYCTVIQAYAEHPLWPEGLLVPFK 971 Query: 76 NSLVSAETCSQVARELDLASF 96 + LVS + + E L+ F Sbjct: 972 DQLVSNKRLHRACLESGLSKF 992 >gi|19112084|ref|NP_595292.1| double-strand-specific ribonuclease Pac1 [Schizosaccharomyces pombe 972h-] gi|129540|sp|P22192|PAC1_SCHPO RecName: Full=Double-strand-specific pac1 ribonuclease; AltName: Full=Protein hcs gi|4999|emb|CAA38745.1| Pac1 ribonuclease [Schizosaccharomyces pombe] gi|1042212|gb|AAB34897.1| double-strand-specific Pac1 ribonuclease [Schizosaccharomyces pombe] gi|2959372|emb|CAA17926.1| double-strand-specific ribonuclease Pac1 [Schizosaccharomyces pombe] gi|68697667|emb|CAJ14141.1| unnamed protein product [Schizosaccharomyces pombe] Length = 363 Score = 76.1 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 13/215 (6%) Query: 21 SLLEKALTHSSISHSYQES-----------YERLEFLGDRILGLLISTLLFNHFDSAKEG 69 L E+ H S ++ + ERLEFLGD L + ++F+ F EG Sbjct: 141 KLKEQVFMHISRAYEIYPNQSNPNELLDIHNERLEFLGDSFFNLFTTRIIFSKFPQMDEG 200 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 LS V E+ + AR + +S KD + AD E+ + AL LD Sbjct: 201 SLSKLRAKFVGNESADKFARLYGFDKTLVLSYSAEKDQLRKSQKVIADTFEAYLGALILD 260 Query: 130 GGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G E A +V + + + + + D + + + EY+ +G + Sbjct: 261 GQEETAFQWVSRLLQPKIANITVQRPIDKLAKSKLFHKYSTLGHIEYRWVDGAGGSAEG- 319 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + +G A+ +++ A AA + L+ Sbjct: 320 YVIACIFNGKEVARAWGANQKDAGSRAAMQALEVL 354 >gi|169849606|ref|XP_001831506.1| 60S ribosomal protein L3 [Coprinopsis cinerea okayama7#130] gi|116507458|gb|EAU90353.1| 60S ribosomal protein L3 [Coprinopsis cinerea okayama7#130] Length = 362 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 76/215 (35%), Gaps = 15/215 (6%) Query: 23 LEKALTHSSISHSYQESYER----------LEFLGDRILGLLISTLLFNHFDSAKEGELS 72 + +A TH S +++ Y R L G+ ++GL L + Sbjct: 78 IRQACTHPSFIDVWRQHYPREKRIPKDNAQLSVFGNSLMGLFAMEYLTTKYPYLPTRIQK 137 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV--ESLIAALYLDG 130 + V TC+ VA EL +R + + A ++ A +Y Sbjct: 138 AVMTAHVGPNTCASVATELGADKLLRWHRTPQTPNAPAVLHTDALASIPRAMTALIYKKH 197 Query: 131 GIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDP 187 + A FV Y+ R + D K L+E H P+ ++ +G + P Sbjct: 198 SLPSARQFVHSYFLSRQVDIRSMLKFLDPKKALKELVHKFGREPPKSRLLKETGRFSNTP 257 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F V + +G S + AE AA + L+R Sbjct: 258 VFVVGIFSGADQIGEGFGSSLKMAEFRAAEDALQR 292 >gi|241061224|ref|XP_002408099.1| dicer-1, putative [Ixodes scapularis] gi|215492368|gb|EEC02009.1| dicer-1, putative [Ixodes scapularis] Length = 1348 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 1/98 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +E+ +GY F +RS L +A+TH+S + + Y+RLEFLGD ++ L++ L+ Sbjct: 1066 VADVERALGYTFVDRSFLLQAVTHASYYRNRLTDCYQRLEFLGDAVIDYLVTRYLYELPR 1125 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 G+L+ +SLV+ + + + L + + Sbjct: 1126 KFNPGQLTDLRSSLVNNTFFASLVVKYGLHGCFKHCNP 1163 >gi|51512119|gb|AAU05314.1| pac1 ribonuclease [Schizosaccharomyces pombe] gi|51512121|gb|AAU05315.1| pac1 ribonuclease [Schizosaccharomyces pombe] Length = 363 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 83/215 (38%), Gaps = 13/215 (6%) Query: 21 SLLEKALTHSSISHSYQES-----------YERLEFLGDRILGLLISTLLFNHFDSAKEG 69 L ++ H S ++ + ERLEFLGD L + ++F+ F EG Sbjct: 141 KLKKQVFMHISRAYEIYPNQSNPNELLDIHNERLEFLGDSFFNLFTTRIIFSKFPQMDEG 200 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 LS V E+ + AR + +S KD + AD E+ + AL LD Sbjct: 201 SLSKLRAKFVGNESADKFARLYGFDKTLVLSYSAEKDQLRKSQKVIADTFEAYLGALILD 260 Query: 130 GGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 G E A +V + + + + + D + + + EY+ +G + Sbjct: 261 GQEETAFQWVSRLLQPKIANITVQRPIDKLAKSKLFHKYSTLGHIEYRWVDGAGGSAEG- 319 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + +G A+ +++ A AA + L+ Sbjct: 320 YVIACIFNGKEVARAWGANQKDAGSRAAMQALEVL 354 >gi|121714731|ref|XP_001274976.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1] gi|158706439|sp|A1C9M6|DCL2_ASPCL RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 gi|119403130|gb|EAW13550.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1] Length = 1389 Score = 75.7 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 1/86 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDS 65 L++ I Y F N SLL +ALTH S + +SY+RLEFLGD +L ++I + +FNH Sbjct: 1100 DRLKRHISYTFENESLLVEALTHPSCDYDASTQSYQRLEFLGDAVLDMIIVSAIFNHPVQ 1159 Query: 66 AKEGELSVRFNSLVSAETCSQVAREL 91 +G ++ ++LV+A + + E Sbjct: 1160 MPQGHMTKIKHALVNANLLAFLCMEF 1185 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + + A++ S +Y+R EFLGD IL +S LF + EG LS + Sbjct: 933 FTSTQHIITAISAPSAQA--LTNYQRYEFLGDSILKFSVSCQLFFKHPNWHEGYLSEGRD 990 Query: 77 SLVSAETCSQVARELDLASFIRVSS 101 +V ++ A + L +F+ Sbjct: 991 EIVQNPRLTKAALDTGLDAFVITKM 1015 >gi|224088236|ref|XP_002308384.1| dicer-like protein [Populus trichocarpa] gi|222854360|gb|EEE91907.1| dicer-like protein [Populus trichocarpa] Length = 1588 Score = 75.7 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 86/246 (34%), Gaps = 31/246 (12%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ +TLE +G+ F + LL +A H S + + L+F + I Sbjct: 1177 SMDLATLENLLGHQFLYKGLLLQAFVHPSHKNGGEFGVMILQFAMTLMFPPEIGVPWRCF 1236 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-------------------L 103 + K G L+ + LV+ + VA + ++ SD Sbjct: 1237 YPKMKPGHLTDLRSVLVNNRAFASVAVDRSFHEYLICDSDALSAATKKFVDFVRTPKSER 1296 Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 R + D+VES + A+ LD G ++ + + S + + LQ Sbjct: 1297 RLLEGPKCPKVLGDLVESSVGAILLDTGFDLNHIWK-------IMLSFLDPISSFSNLQI 1349 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDP--RFTVVVEISGLAP---AQGMDCSKRAAEQVAAAE 218 + + P F+V V +SG A + +K+ A ++A+ + Sbjct: 1350 NPVRELKELCQSHNWDFEVPASKKGRTFSVDVTLSGKDMNISASASNSNKKEAIRMASEK 1409 Query: 219 VLKREG 224 + R Sbjct: 1410 IYARLK 1415 Score = 37.6 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 33/112 (29%), Gaps = 5/112 (4%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV---S 80 +ALT S ERLE LGD L + F D+ EGEL+ + ++ V Sbjct: 1008 LEALTTEKCQERL--SLERLETLGDAFLKFAVGRHFFLLHDTLDEGELTRKRSNAVFIRD 1065 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 L + + + S S + Sbjct: 1066 QPFDPYQFFALGHPCPRICTKESEGTIHSQCGSHVTGQAKGSEVRCSKGHHW 1117 >gi|251772774|gb|EES53336.1| Ribonuclease III [Leptospirillum ferrodiazotrophum] Length = 366 Score = 75.7 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 102/231 (44%), Gaps = 46/231 (19%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFN 61 TL + +G F + +E+ALTH S SH +YERLEFLGDR++GL++S L N Sbjct: 14 ETLIRMLGLPFKDSFRIEEALTHRSASHERGRKKPIPNYERLEFLGDRVVGLIVSEYLLN 73 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + A EGE+ F+++VS +T + +AR +DL S++ + S+ AD E+ Sbjct: 74 MWPQATEGEVGQVFSTIVSTQTLASIARRMDLGSYMILGKGSNSSGERENASLLADTFEA 133 Query: 122 LIAALYLDGGIEVAGTFVDKYW-------------------------------------- 143 L AA+Y + G+E + ++ Sbjct: 134 LTAAIYCEYGLETTRQILIPWFAQPLQEILRAIESAPPREPRRATVPEPAPSPVVTVTAP 193 Query: 144 ---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 + K + K +Q+WA FG+ PE + SGP H RF + Sbjct: 194 RSATPSPRERPKHPPNYKLLIQKWAQQNFGLLPEVVLIEESGPSHQKRFVM 244 >gi|100271838|gb|ABF69324.1| ribonuclease III [Ehrlichia ruminantium] gi|100271841|gb|ABF69326.1| ribonuclease III [Ehrlichia ruminantium] Length = 137 Score = 75.7 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 73/133 (54%) Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 +L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 1 NLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I+ +K+ A Sbjct: 61 VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVGINSHETLHATGHNKKLA 120 Query: 212 EQVAAAEVLKREG 224 EQ AA+ +L + Sbjct: 121 EQKAASLMLAKIN 133 >gi|258565145|ref|XP_002583317.1| predicted protein [Uncinocarpus reesii 1704] gi|237907018|gb|EEP81419.1| predicted protein [Uncinocarpus reesii 1704] Length = 1194 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 79/224 (35%), Gaps = 24/224 (10%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ +E+ +GY F +SL+ ALTH S S + + SY+RLEF+GD +L +++ LF Sbjct: 896 SMVLPEIEELLGYTFTKKSLVLAALTHPS-STTSRHSYQRLEFIGDSVLDIIVVQALFGS 954 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + + +LV+A+ L + ++ + Sbjct: 955 PREFAHYNMHLMRTALVNADF----LAFLCMNVYVEKDRGEAVENIKKKVK--------- 1001 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + + F+ + + ELQE + + + Y T Sbjct: 1002 ---IEMTKRKSHLWGFMKHSQSWDIVHAQNSAIKQHEELQEEINERLNSSQSYPWTLLCR 1058 Query: 183 PDHDPRFT-VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 D F+ ++ I G A L+R G+ Sbjct: 1059 LDAAKFFSDIIESILGAIFIDSQGS------MSACEAFLERIGL 1096 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 5/106 (4%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 F++ SL+ A+ SS +Y+RLEFLGD +L L S L EG L+ R Sbjct: 726 KFSDLSLVLTAI--SSSVAREASNYQRLEFLGDSLLKLYTSIELAAKNLQWPEGLLTSRK 783 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + +VS ++ A E L FI + S D V + Sbjct: 784 SHVVSNSHLAKAATETGLDRFILTKP---FSGAKWRPSYNTDHVHA 826 >gi|119487463|ref|XP_001262524.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181] gi|158705692|sp|A1D9Z6|DCL2_NEOFI RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 gi|119410681|gb|EAW20627.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181] Length = 1388 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 4/90 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLL 59 M L+ IGY F + SLL +ALTH S + +SY+RLE+LGD +L ++I + + Sbjct: 1096 MMN---ERLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAI 1152 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 FNH +G+++ +++V+A + + Sbjct: 1153 FNHPIQRPQGDMTKIKHAVVNANLLAFLCM 1182 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + + A++ +H+ +Y+R EFLGD IL +S LF + EG LS Sbjct: 932 FKSTDHIITAISTP-FAHALT-NYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGRA 989 Query: 77 SLVSAETCSQVARELDLASF 96 +V ++ A + L ++ Sbjct: 990 MIVQNPRLAKAALDTGLDAY 1009 >gi|302687578|ref|XP_003033469.1| hypothetical protein SCHCODRAFT_37756 [Schizophyllum commune H4-8] gi|300107163|gb|EFI98566.1| hypothetical protein SCHCODRAFT_37756 [Schizophyllum commune H4-8] Length = 1343 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 2/127 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64 +E+ +GY F ++LL +ALTH+S SY RLEFLGD +L + ++ +F Sbjct: 1127 LQYVERMLGYTFERKALLIEALTHASYQEPLPTPSYGRLEFLGDAVLDMAVTPYIFASKK 1186 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + G + +R ++ V+ + V + + + + ++ + Sbjct: 1187 NYSPGHIHLRRSAAVNMHFLAFVCLRAKV-AVDKHMPRPTAPDWRVQMATESQDIYLWQC 1245 Query: 125 ALYLDGG 131 L+ Sbjct: 1246 MLHSSST 1252 >gi|331250710|ref|XP_003337961.1| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309316951|gb|EFP93542.1| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1489 Score = 75.3 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 43/78 (55%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L+ LE++IGY F + LL +ALTH S + YER E+LGD ++ + I + F Sbjct: 1107 LKCQALEEKIGYVFKEKLLLVQALTHRSANSFMTNCYEREEWLGDAVIDMWIVEHAYKRF 1166 Query: 64 DSAKEGELSVRFNSLVSA 81 D A EL++ +VS Sbjct: 1167 DHATAEELTLARAKVVSN 1184 Score = 37.6 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 6/82 (7%) Query: 2 SALRYSTLEKRIGYAFANRSLL--EKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 +L+ +TL KR+ F SLL +ALT Y+ LE LGD L L S + Sbjct: 919 DSLQATTLFKRLD--FPTISLLHGIQALTPP--GGGVPWDYQTLETLGDAFLKLATSVHV 974 Query: 60 FNHFDSAKEGELSVRFNSLVSA 81 + EG++S + V Sbjct: 975 YLSHLKKGEGDMSHVRSRSVDN 996 >gi|158706443|sp|Q0CEI2|DCL2_ASPTN RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 Length = 1377 Score = 75.3 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 5/92 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLL 59 M+ +L++ +GY F N +LL +ALTH S S + +SY+RLEFLGD +L +++ + Sbjct: 1089 MN----DSLKQHLGYTFVNEALLVEALTHPSCRSDASTQSYQRLEFLGDAVLDMVVVHAM 1144 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 +H +GE+++ ++L +A + E Sbjct: 1145 AHHAVECPQGEMTMIKHALTNANLLAFFCMEF 1176 Score = 39.9 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 3/88 (3%) Query: 10 EKRI-GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E + F++ + A++ + Y+R EF GD +L +S L+ + E Sbjct: 921 ETILQDVQFSSTRHVITAISAPTAQSPT--DYQRYEFFGDSVLKFTVSCQLYMQHPNWPE 978 Query: 69 GELSVRFNSLVSAETCSQVARELDLASF 96 G LS + +V ++ A ++ L +F Sbjct: 979 GYLSEGRDEIVQNNRLARAALDVGLDAF 1006 >gi|115401870|ref|XP_001216523.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114190464|gb|EAU32164.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 1635 Score = 75.3 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 5/92 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLL 59 M+ +L++ +GY F N +LL +ALTH S S + +SY+RLEFLGD +L +++ + Sbjct: 1063 MN----DSLKQHLGYTFVNEALLVEALTHPSCRSDASTQSYQRLEFLGDAVLDMVVVHAM 1118 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 +H +GE+++ ++L +A + E Sbjct: 1119 AHHAVECPQGEMTMIKHALTNANLLAFFCMEF 1150 Score = 39.9 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 3/88 (3%) Query: 10 EKRI-GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E + F++ + A++ + Y+R EF GD +L +S L+ + E Sbjct: 895 ETILQDVQFSSTRHVITAISAPTAQSPT--DYQRYEFFGDSVLKFTVSCQLYMQHPNWPE 952 Query: 69 GELSVRFNSLVSAETCSQVARELDLASF 96 G LS + +V ++ A ++ L +F Sbjct: 953 GYLSEGRDEIVQNNRLARAALDVGLDAF 980 >gi|159122296|gb|EDP47418.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus A1163] Length = 1384 Score = 75.3 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 4/92 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLL 59 M L+ IGY F + SLL +ALTH S + +SY+RLE+LGD +L ++I + + Sbjct: 1092 MMN---DRLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAI 1148 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 FNH +G+++ +++V+A + + E Sbjct: 1149 FNHRIQRPQGDMTKIKHAVVNANLLAFLCMEF 1180 Score = 40.3 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 +F + + A++ +Y+R EFLGD IL +S LF + EG LS Sbjct: 927 SFKSTDHIITAISTP--LAHRLTNYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGR 984 Query: 76 NSLVSAETCSQVARELDLASF 96 + +V ++ A + L ++ Sbjct: 985 DMIVQNPRLAKAALDTGLDAY 1005 >gi|158706446|sp|Q4WA22|DCL2_ASPFU RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 Length = 1388 Score = 75.3 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 4/92 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLL 59 M L+ IGY F + SLL +ALTH S + +SY+RLE+LGD +L ++I + + Sbjct: 1096 MMN---DRLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAI 1152 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 FNH +G+++ +++V+A + + E Sbjct: 1153 FNHRIQRPQGDMTKIKHAVVNANLLAFLCMEF 1184 Score = 40.3 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 +F + + A++ +Y+R EFLGD IL +S LF + EG LS Sbjct: 931 SFKSTDHIITAISTP--LAHRLTNYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGR 988 Query: 76 NSLVSAETCSQVARELDLASF 96 + +V ++ A + L ++ Sbjct: 989 DMIVQNPRLAKAALDTGLDAY 1009 >gi|70981901|ref|XP_746479.1| RNA helicase/RNAse III [Aspergillus fumigatus Af293] gi|66844102|gb|EAL84441.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus Af293] Length = 1384 Score = 75.3 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 4/92 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLL 59 M L+ IGY F + SLL +ALTH S + +SY+RLE+LGD +L ++I + + Sbjct: 1092 MMN---DRLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAI 1148 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 FNH +G+++ +++V+A + + E Sbjct: 1149 FNHRIQRPQGDMTKIKHAVVNANLLAFLCMEF 1180 Score = 40.3 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 +F + + A++ +Y+R EFLGD IL +S LF + EG LS Sbjct: 927 SFKSTDHIITAISTP--LAHRLTNYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGR 984 Query: 76 NSLVSAETCSQVARELDLASF 96 + +V ++ A + L ++ Sbjct: 985 DMIVQNPRLAKAALDTGLDAY 1005 >gi|170086892|ref|XP_001874669.1| predicted protein [Laccaria bicolor S238N-H82] gi|164649869|gb|EDR14110.1| predicted protein [Laccaria bicolor S238N-H82] Length = 353 Score = 75.3 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 77/233 (33%), Gaps = 16/233 (6%) Query: 6 YSTLEKRIGYA--FANRSLLEKALTHSSISHSYQESYER---------LEFLGDRILGLL 54 S RIG A + L+++A TH S + Y + Y R L LG+ +LGL Sbjct: 59 LSAFAHRIGLASILTSTDLIQQACTHPSFTALYSQHYPRETPPSTNAQLVILGNSLLGLF 118 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 + L + + V TC+ +A+E+ +R R + Sbjct: 119 ATEYLNAKYPYLPTRVQKAALTAHVGPATCASIAQEMGATPLVRWHRTPRTSTRPSVLHT 178 Query: 115 QADVVE----SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 A + + +Q L+ D K L E Sbjct: 179 DALASVPRALTALVYQQRSLFSARKFVHSYFLSRQIDLRGMLKFLDPKKALLEMVKKFDR 238 Query: 171 VTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P+ ++ +G + P F V + +G S + AE AA + L R Sbjct: 239 EKPKSRLLKETGRFSNSPVFVVGIFSGADQLGEGFGSSLKMAEFRAAEDALHR 291 >gi|46117132|ref|XP_384584.1| hypothetical protein FG04408.1 [Gibberella zeae PH-1] Length = 1451 Score = 75.3 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE+ IGY F +SLL +A+TH S + Q SYE+LEFLGD +L ++ T +F Sbjct: 1155 EPLEELIGYTFQKKSLLIEAMTHGSYAADGQQRSYEQLEFLGDAVLDYIVVTRMFQSDPP 1214 Query: 66 AKEGELSVRFNSLVSAETCSQVARELD 92 G L + ++ +A+ + + Sbjct: 1215 VPNGRLHMVKTAMANADFLAFTNMQHG 1241 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + L+ +A++ S + YER+EFLGD +L ++ EG L+ + Sbjct: 982 ITDLQLVIEAISSRSAAEPV--DYERIEFLGDSVLKYCTVIQAYSEHPFWPEGLLNHFKD 1039 Query: 77 SLVSAETCSQVARELDLASFIR 98 LVS +++ E L+ FI Sbjct: 1040 RLVSNTRLTRMCLETGLSKFIF 1061 >gi|328947077|ref|YP_004364414.1| ribonuclease III [Treponema succinifaciens DSM 2489] gi|328447401|gb|AEB13117.1| ribonuclease III [Treponema succinifaciens DSM 2489] Length = 369 Score = 75.3 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 83/252 (32%), Gaps = 37/252 (14%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58 M+ ++ I Y F N LLE+A T S S + E + E LEF GD IL ++ + Sbjct: 1 MNRQDIGFVQSSINYQFKNLQLLEQAFTRKSYSEEHPELQNNEVLEFYGDEILDFFVTKM 60 Query: 59 LFNHFDSA---------KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 ++ F EGEL+ + LVS E+ ++ + + F+ + K+ Sbjct: 61 MYKRFSRILNNELVSEKNEGELTKLKSILVSKESLARCMYNIGFSKFLYLGKSDEKNEVY 120 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK------------------------- 144 S+ D+ E++I A+ D Sbjct: 121 KSKSVNEDLFEAIIGAVAADCDWNYEKLEKVCRTMLDMETTNGYLALLVKEKSHRLGFGE 180 Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQG 203 + + + + T ++ + + V + G Sbjct: 181 PCYRPFAWQTDNPEDWQSDNLFNMGIGFGGFGSTSKNPKTGKHEYGIQVGENKFTGIGDG 240 Query: 204 MDCSKRAAEQVA 215 + +K AEQ A Sbjct: 241 IAQAKLNAEQKA 252 Score = 42.6 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 53/194 (27%), Gaps = 11/194 (5%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEG------ELSVRFNSLVSAETCSQ----VA 88 +YE+LE + +L + + K F Q Sbjct: 144 NYEKLEKVCRTMLDMETTNGYLALLVKEKSHRLGFGEPCYRPFAWQTDNPEDWQSDNLFN 203 Query: 89 RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI-AALYLDGGIEVAGTFVDKYWKQRA 147 + F S + + + + + + E + + Sbjct: 204 MGIGFGGFGSTSKNPKTGKHEYGIQVGENKFTGIGDGIAQAKLNAEQKAYHFLIQEEIKQ 263 Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + + L E K + Y+ + +P + + G + + S Sbjct: 264 QFQNLDYTNPASTLHELFQKKVIMEVRYEFNEYHDENGNPIWNCKAILEGYGTFEADNAS 323 Query: 208 KRAAEQVAAAEVLK 221 K+ +Q A+ ++LK Sbjct: 324 KKQVKQDASLKLLK 337 >gi|221125080|ref|XP_002155102.1| PREDICTED: similar to dicer 1 [Hydra magnipapillata] Length = 798 Score = 75.0 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 E I Y F+N+S L +A TH S S+S Y++ EFLGD IL LI+ + ++ Sbjct: 600 NLHKFEDLISYKFSNKSHLIQAFTHLSYLSNSVTGCYQQYEFLGDAILDFLITLHIQSNT 659 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + G+L+ +++V+ T +A + +I Sbjct: 660 QNLSPGQLTYFRSAVVNNNTFGLLAIKHSFYKYIY 694 Score = 41.5 bits (95), Expect = 0.088, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 11/153 (7%) Query: 4 LRYSTLEKRIGY---AFANRSLLE--KALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 L L + Y + S+L+ +ALT + ERLE LGD L +S Sbjct: 383 LDLENLLQLKNYVTENVKSPSVLKIFEALTTR--QANMPFDLERLEILGDSFLKQAVSIF 440 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 +F S EG+L++R + +S E +V + + + + + S + Sbjct: 441 VFFQNPSFHEGKLTIRRKNCISNENLCKVGKSVGI----QNIICNSQFGIKSSNSENRNP 496 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 + YL ++ + + + +++ Sbjct: 497 WTVWLPPGYLRAELDDIKRYTYQNVQPKSIADC 529 >gi|332706107|ref|ZP_08426179.1| RNAse III [Lyngbya majuscula 3L] gi|332355199|gb|EGJ34667.1| RNAse III [Lyngbya majuscula 3L] Length = 237 Score = 75.0 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 8/210 (3%) Query: 5 RYSTLEKRIGYAFA---NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +++G + N SLL+ ALTH SIS ++YE+LEF+GD ++ L S L+ Sbjct: 11 QLEKLVQKLGLSKTTAVNWSLLDLALTHCSISAE--DNYEQLEFVGDAVIRLASSEWLWE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ ++ GE + + LVS SQ+AR L ++ VS+ D + + Sbjct: 69 NYPNSSVGEFAAIRSVLVSDRILSQLARSYGLERYLLVSNSAAGDKVGETSRLADAFEAI 128 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L A +E+ ++D + ++ ++ R++ K LQEW A + + P+Y +T Sbjct: 129 LGALYLSTHTLELVRPWLDPHLQKLTTEIRQDPARQNYKDALQEWTQAHYKLLPKYHLTE 188 Query: 180 RSGPDH-DPRFTVVVEISGLAPAQGMDCSK 208 + RFT V + +G SK Sbjct: 189 NLQVHGANNRFTAQVWLQNRQLGEGTGRSK 218 >gi|298711900|emb|CBJ48587.1| dicer-like 3 [Ectocarpus siliculosus] Length = 1557 Score = 75.0 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 22/183 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS-------YQESYERLEFLGDRILGL 53 M +R LEKR+GY F L +A+TH S + + + Y+RLEFLGD +LG Sbjct: 1318 MGNIRL--LEKRLGYTFRYPWLCMQAITHPSWTINDIPPGTVPAQDYQRLEFLGDAVLGW 1375 Query: 54 LISTLLFNHFDSAKEGELSVRFNS--LVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +++ L+ + EL+ + V + +A LD+ +R S + + +F+ Sbjct: 1376 MVTAHLYFASSAFTPAELTRIKVTSSCVCNASLWVIALRLDVHHVLRASPKILGHIHAFI 1435 Query: 112 -----------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 ADV+E+LI A+++D + + + + R K D Sbjct: 1436 ENNGVSGTGTAPKHPADVLEALIGAVFIDSSCCMNASLLLEGAPPRMSMRTKAWADMAFA 1495 Query: 161 LQE 163 + Sbjct: 1496 VTM 1498 >gi|297815500|ref|XP_002875633.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp. lyrata] gi|297321471|gb|EFH51892.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp. lyrata] Length = 1521 Score = 75.0 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 37/95 (38%), Positives = 61/95 (64%), Gaps = 2/95 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + LE++I + F+ + LL++A+THSS+ SY SYERLEFLGD +L LI+ LFN ++ Sbjct: 1139 LTELERKIQHEFSAKFLLKEAITHSSVHESY--SYERLEFLGDSVLDFLITRHLFNTYEQ 1196 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 GE++ ++ V+ E +QVA + +L ++ Sbjct: 1197 TGPGEMTDLRSACVNNENFAQVAVKNNLHIHLQRC 1231 >gi|195996297|ref|XP_002108017.1| hypothetical protein TRIADDRAFT_52064 [Trichoplax adhaerens] gi|190588793|gb|EDV28815.1| hypothetical protein TRIADDRAFT_52064 [Trichoplax adhaerens] Length = 707 Score = 75.0 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 44/93 (47%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +++E + Y+F NRSLL ALTH S S SYE+L FLGD +L I L+ + Sbjct: 441 NSVETILNYSFRNRSLLMLALTHKSYSGLESISYEKLAFLGDTLLIYQICLFLYTQYTDY 500 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 + + + L VA DL F+ Sbjct: 501 QPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLH 533 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 2/123 (1%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +A+T SS + + ERLEFLGDR L I+ S E+ R L + Sbjct: 269 LLEAITLSSAQDHF--NLERLEFLGDRYLNYKITLTTLLEHPSWSINEVINRMRFLTKNK 326 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 ++ + +I + + V L A+ + + Sbjct: 327 KLFRLGAGRRIPYYIVGCPFNQNKSWVPPGFVINQTVSELSIAMSREYTHQPLTKKAIAD 386 Query: 143 WKQ 145 + Sbjct: 387 CVE 389 >gi|167046032|gb|ABZ10547.1| dicer-like protein E [Trichoplax adhaerens] Length = 359 Score = 75.0 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 44/93 (47%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +++E + Y+F NRSLL ALTH S S SYE+L FLGD +L I L+ + Sbjct: 171 NSVETILNYSFRNRSLLMLALTHKSYSGLESISYEKLAFLGDTLLIYQICLFLYTQYTDY 230 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 + + + L VA DL F+ Sbjct: 231 QPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLH 263 Score = 41.5 bits (95), Expect = 0.094, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 2/121 (1%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +A+T SS + + ERLEFLGDR L I+ S E+ R L + Sbjct: 1 EAITLSSAQDHF--NLERLEFLGDRYLNYKITLTTLLEHPSWSINEVINRMRFLTKNKKL 58 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 ++ + +I + + V L A+ + + Sbjct: 59 FRLGAGRRIPYYIVGCPFNQNKSWVPPGFVINQTVSELSIAMSREYTHQPLTKKAIADCV 118 Query: 145 Q 145 + Sbjct: 119 E 119 >gi|154300125|ref|XP_001550479.1| hypothetical protein BC1G_10438 [Botryotinia fuckeliana B05.10] gi|150856727|gb|EDN31919.1| hypothetical protein BC1G_10438 [Botryotinia fuckeliana B05.10] Length = 1398 Score = 75.0 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E+ + Y F +SLL +A+TH S + +S ERLEFLGD IL +I T +++H Sbjct: 1087 LRPVEQILAYTFTKKSLLVEAMTHPSYTSG-TQSLERLEFLGDSILDNIIVTAMWSHSTP 1145 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + + ++LV+A+ + + E+ + + ++ + S + + S + Sbjct: 1146 LSHFHMHLLRSALVNADFLAFLCMEMSIDQNVTNLTEGKNHRIHETHSRRRVSLVSFL 1203 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 8/93 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE +++SL++ A+TH+S S +Y+RLEFLGD IL L S L Sbjct: 959 LKDLE------ISDQSLIQTAITHASYS--LDSNYQRLEFLGDSILKLCTSVQLVAEHLD 1010 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG LS + +VS S+ A E+ L +I Sbjct: 1011 WHEGYLSAMKDRIVSNSRSSRAAAEVGLDEYIM 1043 >gi|100271832|gb|ABF69320.1| ribonuclease III [Ehrlichia ruminantium] Length = 137 Score = 75.0 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 73/133 (54%) Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 +L FI +S R + ++ + +E+LI A+YLDGG++ A F+ +WK A Sbjct: 1 NLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +DAKT LQEWA +K P Y + +SGPDH+P FTV V I+ +K+ A Sbjct: 61 VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVGINSHETLHATGQNKKLA 120 Query: 212 EQVAAAEVLKREG 224 EQ AA+ +L + Sbjct: 121 EQKAASLMLAKIN 133 >gi|226295027|gb|EEH50447.1| abhydrolase domain-containing protein [Paracoccidioides brasiliensis Pb18] Length = 723 Score = 75.0 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 22/221 (9%) Query: 23 LEKA-LTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 L+ A TH ++ +++YERLE LGD + + + L+++ F + G LS Sbjct: 156 LQTAIFTHEGVNDPTNTTTTTASTEKNYERLELLGDAYIEIFATRLVWDTFPRLRAGRLS 215 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV ET ++ A L ++V++++R+ T ++ D+ E+ +AA+ L Sbjct: 216 QIREMLVKNETLAEYATRYGLDRRLQVAAEIRRQ-AKTWTKVRGDLFEAYVAAVILSHPK 274 Query: 133 ---EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG---PDHD 186 E+ ++ + W R + R + + + V R G Sbjct: 275 RGVEMVEEWLTQLWIPRLEGVERERPVLRYKEELAKMVMDKGVRVRYVDEREGVQRKGGL 334 Query: 187 PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222 F V V + G + G SK A AA + L+ Sbjct: 335 QTFFVGVYLDGWGFRDVCLGTGTGMSKVIAGNEAARKALEN 375 >gi|295657108|ref|XP_002789127.1| abhydrolase domain-containing protein [Paracoccidioides brasiliensis Pb01] gi|226284541|gb|EEH40107.1| abhydrolase domain-containing protein [Paracoccidioides brasiliensis Pb01] Length = 740 Score = 75.0 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 22/221 (9%) Query: 23 LEKA-LTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 L+ A TH ++ +++YERLE LGD + + + L+++ F + G LS Sbjct: 151 LQTAIFTHEGVNDPTNTTTTTTSTEKNYERLELLGDAYIEIFATRLVWDTFPRLRAGRLS 210 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV ET ++ A L ++V++++R+ T ++ D+ E+ +AA+ L Sbjct: 211 QIREMLVKNETLAEYATRYGLDRRLQVAAEIRRQ-AKTWTKVRGDLFEAYVAAVILSHPK 269 Query: 133 ---EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG---PDHD 186 E+ ++ + W R + R + + + V R G Sbjct: 270 RGVEMVEEWLTQLWIPRLEGVERERPVLRYKEELAKMVMDKGVRVRYVDEREGVQRKGGL 329 Query: 187 PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222 F V V + G + G SK A AA + L+ Sbjct: 330 QTFFVGVYLDGWGFRDVCLGTGTGMSKVIAGNEAARKALEN 370 >gi|322704697|gb|EFY96289.1| Dicer-like protein 1 [Metarhizium anisopliae ARSEF 23] Length = 1476 Score = 75.0 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 1/101 (0%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSA 66 ++ IGY F + LL A H S + + +Y+RLEFLGD +L + I LF + A Sbjct: 1199 KVKASIGYNFRSPKLLRSAFKHPSYPYEPELPNYQRLEFLGDALLDVAIVDFLFQRYPLA 1258 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 L+ ++ S S + EL L I + Sbjct: 1259 DPQWLTEHKMAMASNHFFSFLCVELGLHRHILSTGSSIMGH 1299 Score = 43.0 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 22 LLEKALT--HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 L +ALT + ++YERLEFLGD L + + LF + E E V L+ Sbjct: 1019 LALEALTKGEEDVDVQTSKNYERLEFLGDAFLKMATTISLFTLIPNRNEFEYHVERMILI 1078 Query: 80 SAETCSQVARELDLASFIR 98 + A + L ++R Sbjct: 1079 CNKNLFNHAVDRGLQEYVR 1097 >gi|255521158|ref|ZP_05388395.1| ribonuclease III [Listeria monocytogenes FSL J1-175] Length = 147 Score = 74.6 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 1/144 (0%) Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 + + A + + ++R+ K ++ ADV ES I ALYLD GI+ TF++ Sbjct: 1 EPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLE 60 Query: 141 KYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 + + D KT+LQE V EY + +GP H+ F V ++G Sbjct: 61 RVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQV 120 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 +G +K+ AEQ AA + + Sbjct: 121 LGKGSGRTKKQAEQSAAQFAINQL 144 >gi|330944921|ref|XP_003306459.1| hypothetical protein PTT_19601 [Pyrenophora teres f. teres 0-1] gi|311316023|gb|EFQ85435.1| hypothetical protein PTT_19601 [Pyrenophora teres f. teres 0-1] Length = 1448 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNH 62 + +EK +GY F N++LL +ALTH + SYER EFLGD +L ++S L+ H Sbjct: 1159 MSLGLIEKLLGYKFNNKALLLEALTHVTFRGLNTNCSYERHEFLGDAVLDYIVSRKLYAH 1218 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVAR 89 ++ ++V+A + Sbjct: 1219 KPELSHRKMHGIRTAMVNASFLAYSMF 1245 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 4/85 (4%) Query: 19 NRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 N L L ALT S + + Y+RLEFLGD IL + S L EG L+ + Sbjct: 992 NLHLPVLVTALT--SSATNEGNDYQRLEFLGDCILKFIASLHLMAANLQMPEGMLTGKKG 1049 Query: 77 SLVSAETCSQVARELDLASFIRVSS 101 LVS ++ L +I Sbjct: 1050 KLVSNGYLARATLAAGLDQYIFYKR 1074 >gi|268611358|ref|ZP_06145085.1| dsRNA-spesific ribonuclease [Ruminococcus flavefaciens FD-1] Length = 512 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 88/263 (33%), Gaps = 37/263 (14%) Query: 1 MSALRYS---------TLEKRIGYAFANRSLLEKALTHS--SISHSYQESYERLEFLGDR 49 M+ ++++ + + IGY F N +LL +A T SI + +ES E LEF GD+ Sbjct: 149 MNTMKFAASPDKDPAIKIAQIIGYHFNNDNLLRQAFTRRAFSIEYGLEESNEILEFFGDQ 208 Query: 50 ILGLLISTLLFNHFDSAKEG-------------ELSVRFNSLVSAETCSQVARELDLASF 96 +L ++I+ +++ F EL+ + ++ E S A EL L + Sbjct: 209 VLSMIITREMYSSFIVYSNHSVEAPFTSKFNEGELTKIRSKFINKEHLSARAAELGLDKY 268 Query: 97 IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 I + + ++A + + + IE + + + + Sbjct: 269 ILYGTGEEPGDSAREDMMEALIGAVAADSNWNWKVIEDVVDKLVALYFGNTERLLEESAY 328 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV----VVEISGLAPAQGM------DC 206 + H E + R+ V + Sbjct: 329 DRLNKWHQKHFGCMPEYEVRRVCTDEDSPSSRYICTLRYSVPSNDKGIRNAQRIDGRPGF 388 Query: 207 SKRAAEQVAAAEVL---KREGIW 226 S+ A A L K+ G+W Sbjct: 389 SRSMARAYCANMALIFIKKHGLW 411 >gi|258614465|ref|ZP_05712235.1| ribonuclease III [Enterococcus faecium DO] Length = 97 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 4/95 (4%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56 M L++ F + +LLE+A THSS + ++ ERLEFLGD +L L++S Sbjct: 1 MDNQLTKELKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVS 60 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 LF + EG+L+ + S ++ + + Sbjct: 61 QYLFRLYPHLPEGKLTKNTSCDRSRRQLVEICQRM 95 >gi|296417821|ref|XP_002838549.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634492|emb|CAZ82740.1| unnamed protein product [Tuber melanosporum] Length = 1490 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFD 64 LE IGY F +++LL +A+TH S SY+R+EFLGD +L +++ LF Sbjct: 1105 LKGLESLIGYHFTHKALLLEAITHPSWESDMTSLSYQRMEFLGDALLDMVVVNHLFFSPR 1164 Query: 65 SAKEGELSVRFNSLVSAET 83 + ++ + +S+V+ Sbjct: 1165 NLSHIDMHLYKSSVVNGNF 1183 Score = 38.8 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%) Query: 7 STLEKRIGYA--FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE+ + + F + + AL+ SS S Y+R EFLGD +L L S L + Sbjct: 919 ADLERTLLHPVGFNSIPKMVTALSASSAREST--DYQRFEFLGDSVLKFLTSVNLLDEHP 976 Query: 65 SAKEGELSVRFNSLVSA 81 EG L+ + +V+ Sbjct: 977 FWHEGYLTRKKEQMVAN 993 >gi|327349134|gb|EGE77991.1| dicer [Ajellomyces dermatitidis ATCC 18188] Length = 1482 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 45/86 (52%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY+F + L +A TH S S SY+RLEF+GD IL +I LFN + Sbjct: 1151 FQEIESLLGYSFNKKVFLVQAFTHPSNPGSTTSSYQRLEFVGDAILDHIIVHHLFNSSRN 1210 Query: 66 AKEGELSVRFNSLVSAETCSQVAREL 91 ++ + +L +A+ + + + Sbjct: 1211 LPHFDMHLMRTALANADFLAFLCIGM 1236 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 8/121 (6%) Query: 1 MSALRYSTLEKRIG------YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54 M + + +++ AF + SL+ A++ +S++ +Y+R+EFLGD IL Sbjct: 956 MHKVEIYLIAEQLNKTILKPVAFTDLSLVVTAIS-ASVARE-ATNYQRIEFLGDSILKFH 1013 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 + L EG LS +++VS + S A E L FI V + Sbjct: 1014 TTLQLSAANLVWHEGLLSRAKDNVVSNKRLSYAAVETGLDKFILVDVFTGAKWRPRYNKV 1073 Query: 115 Q 115 Sbjct: 1074 H 1074 >gi|239610437|gb|EEQ87424.1| dicer-like protein 2 [Ajellomyces dermatitidis ER-3] Length = 1509 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 45/86 (52%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY+F + L +A TH S S SY+RLEF+GD IL +I LFN + Sbjct: 1177 FQEIESLLGYSFNKKVFLVQAFTHPSNPGSTTSSYQRLEFVGDAILDHIIVHHLFNSSRN 1236 Query: 66 AKEGELSVRFNSLVSAETCSQVAREL 91 ++ + +L +A+ + + + Sbjct: 1237 LPHFDMHLMRTALANADFLAFLCIGM 1262 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 8/121 (6%) Query: 1 MSALRYSTLEKRIG------YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54 M + + +++ AF + SL+ A++ +S++ +Y+R+EFLGD IL Sbjct: 982 MHKVEIYLIAEQLNKTILKPVAFTDLSLVVTAIS-ASVARE-ATNYQRIEFLGDSILKFH 1039 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 + L EG LS +++VS + S A E L FI V + Sbjct: 1040 TTLQLSAANLVWHEGLLSRAKDNVVSNKRLSYAAVETGLDKFILVDVFTGAKWRPRYNKV 1099 Query: 115 Q 115 Sbjct: 1100 H 1100 >gi|261195592|ref|XP_002624200.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081] gi|239588072|gb|EEQ70715.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081] Length = 1509 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 45/86 (52%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY+F + L +A TH S S SY+RLEF+GD IL +I LFN + Sbjct: 1177 FQEIESLLGYSFNKKVFLVQAFTHPSNPGSTTSSYQRLEFVGDAILDHIIVHHLFNSSRN 1236 Query: 66 AKEGELSVRFNSLVSAETCSQVAREL 91 ++ + +L +A+ + + + Sbjct: 1237 LPHFDMHLMRTALANADFLAFLCIGM 1262 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 8/121 (6%) Query: 1 MSALRYSTLEKRIG------YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54 M + + +++ AF + SL+ A++ +S++ +Y+R+EFLGD IL Sbjct: 982 MHKVEIYLIAEQLNKTILKPVAFTDLSLVVTAIS-ASVARE-ATNYQRIEFLGDSILKFH 1039 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 + L EG LS +++VS + S A E L FI V + Sbjct: 1040 TTLQLSAANLVWHEGLLSRAKDNVVSNKRLSYAAVETGLDKFILVDVFTGAKWRPRYNKV 1099 Query: 115 Q 115 Sbjct: 1100 H 1100 >gi|328773741|gb|EGF83778.1| hypothetical protein BATDEDRAFT_85615 [Batrachochytrium dendrobatidis JAM81] Length = 1746 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 82/244 (33%), Gaps = 30/244 (12%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +++++ Y F N LL AL + +ERLEFLGD I+ +L++ + H+ A Sbjct: 1484 VQQKLSYNFHNPELLLIALMTPFYFVKSK--FERLEFLGDAIMDILVARYFYRHYKHADP 1541 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD---------------------- 106 LS + V ++ L L + SS L + Sbjct: 1542 CSLSKMIQATVCKPAFCKILVSLKLHEHLLQSSQLSQHSKEAIVLYANYIQNSHSQHAFK 1601 Query: 107 ---VCSFMTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 + DV E ++AA+++D G E + Y + + + Sbjct: 1602 QADKAIDGPKVLCDVFEVIVAAIFIDTGYNLERTRLVIFPYVHSFIQSNINLETITEPPI 1661 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRF-TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 ++ + S + F V G A + + A+Q A+ + L Sbjct: 1662 RQLFAFVQSQGFSSEKLELSDESNADGFHKASVVFYGTVLATSQATTLKLAKQHASIKAL 1721 Query: 221 KREG 224 Sbjct: 1722 NVLK 1725 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 4/87 (4%) Query: 7 STLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + +++ G L L A T + + +YERLE LGD++L ++ L + + Sbjct: 1282 AEFDQKYGLYPKQIPLSTLMSAFTTPAANSIT--NYERLETLGDKVLKFGVAHYLHSSYQ 1339 Query: 65 SAKEGELSVRFNSLVSAETCSQVAREL 91 S + G+LS + LVS + ++A++ Sbjct: 1340 SYEVGQLSTILSGLVSNKNLFEIAQQH 1366 >gi|85083779|ref|XP_957185.1| hypothetical protein NCU01762 [Neurospora crassa OR74A] gi|7800875|emb|CAB91233.1| related to Ribonuclease III [Neurospora crassa] gi|28918272|gb|EAA27949.1| predicted protein [Neurospora crassa OR74A] Length = 352 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 79/245 (32%), Gaps = 37/245 (15%) Query: 19 NRSLLEKALTHS-SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 + +L + ALTH ++ SYERLE++GD L L+ S+ ++ F + G+ + R Sbjct: 67 DPALKKAALTHPGKANNDPVASYERLEWIGDAYLELIASSFIYQTFPTLPAGKSAQRREM 126 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDV--------CSFMTSIQADVVESLIAALY-- 127 L+ T + + L + + + I D+ E+ + + Sbjct: 127 LIRNTTLGEFSVYYGLDKMADIPEEFNMEGRVGGTNASQKVRIKILGDLFEAYVGGVILS 186 Query: 128 -----LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + + + + K R + + T G Sbjct: 187 DPANGIQRASDWLKALWGPLMAEYIREEEKKARKPEQKQSASGQTLDPKTVLEATIGARG 246 Query: 183 --------PDHD--------PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLK 221 P + P F + ++G L G SK+ A Q AA L Sbjct: 247 VKIEYKDLPSKNLKDRGTKLPLFAIGCFMTGWGETNLQLGHGSALSKKEAGQKAAQMALD 306 Query: 222 REGIW 226 + + Sbjct: 307 NKKLL 311 >gi|167046034|gb|ABZ10548.1| dicer-like protein E [Placozoa sp. DMJ-2008] Length = 359 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 44/93 (47%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +++E + Y+F NRSLL ALTH S S SYE+L FLGD +L I L+ + Sbjct: 171 NSVETILNYSFRNRSLLMLALTHKSYSGLESISYEKLAFLGDTLLIYQIYLFLYTQYTDY 230 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 + + + L VA DL F+ Sbjct: 231 QPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLH 263 Score = 41.5 bits (95), Expect = 0.094, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 2/121 (1%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +A+T SS + + ERLEFLGDR L I+ S E+ R L + Sbjct: 1 EAITLSSAQDHF--NLERLEFLGDRYLNYKITLTTLLEHPSWSINEVINRMRFLTKNKKL 58 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 ++ + +I + + V L A+ + + Sbjct: 59 FRLGAGRRIPYYIVGCPFNQNKSWVPPGFVINQTVSELSIAMSREYTHQPLTKKAIADCV 118 Query: 145 Q 145 + Sbjct: 119 E 119 >gi|169868762|ref|XP_001840952.1| hypothetical protein CC1G_03181 [Coprinopsis cinerea okayama7#130] gi|116498110|gb|EAU81005.1| hypothetical protein CC1G_03181 [Coprinopsis cinerea okayama7#130] Length = 2074 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63 + + +E +GY F + LL +ALTH+S H SYER+EF+GD IL ++++ +L+ Sbjct: 1732 QLADVEHMLGYTFKRKILLIEALTHASYREHINTISYERMEFIGDSILDMVVTDMLYRAP 1791 Query: 64 DSAKEGELSVRFNSLVSAETCSQVA 88 G + +R +++V+ + + Sbjct: 1792 REYSPGHIHLRRSAVVNGHFLAYIC 1816 Score = 40.3 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 2/81 (2%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 +L ALT + +Y+RLE LGD +L L +F + EG L+ R + V+ Sbjct: 1491 DVLTVALTAP--VAGERHNYQRLETLGDTVLKFLAGIQIFAEYPMWHEGYLTKRKDHAVA 1548 Query: 81 AETCSQVARELDLASFIRVSS 101 ++ + + +I Sbjct: 1549 NVRLAKECVKRGVVRWIIRDR 1569 >gi|289425710|ref|ZP_06427468.1| RNase3 domain protein [Propionibacterium acnes SK187] gi|289153883|gb|EFD02586.1| RNase3 domain protein [Propionibacterium acnes SK187] Length = 146 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 3/128 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61 + ++ L + +G L ALTH S ++ + ERLEFLGD +LGL +++ L+ Sbjct: 20 VDHTPLLESLGVDLQ-PEHLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVASQLYI 78 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + S E ++S S+VS S +ARE++L I + + SI AD E+ Sbjct: 79 TYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTEA 138 Query: 122 LIAALYLD 129 + A+Y + Sbjct: 139 IFGAIYRE 146 >gi|15242329|ref|NP_199328.1| RTL3 (RNase three-like protein 3); RNA binding / double-stranded RNA binding / ribonuclease III [Arabidopsis thaliana] gi|75171238|sp|Q9FKF0|RTL3_ARATH RecName: Full=Ribonuclease 3-like protein 3; AltName: Full=Ribonuclease III-like protein 3; Short=RNase III-like protein 3; AltName: Full=Ribonuclease three-like protein 3 gi|9759600|dbj|BAB11388.1| unnamed protein product [Arabidopsis thaliana] gi|332007827|gb|AED95210.1| RNAse THREE-like protein 3 [Arabidopsis thaliana] Length = 957 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 80/239 (33%), Gaps = 22/239 (9%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + +EK + Y+F N++LL++ LTH + ++ L F+G+ L L + L+ Sbjct: 411 MDS-SVEAVEKILNYSFVNKTLLKELLTH-----NNSPLFQGLMFVGESALSLAFTKHLY 464 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLR 104 + + +LSV ++ + + VA + + + + Sbjct: 465 LTYPMLEPKDLSVLRDANTCHDKYACVAVKKGIYQSFIGSVPKPEKMTTDFIELMGKEDD 524 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW 164 I +++ + A+Y+D V + + R + Sbjct: 525 PYRVVKAPKILVNLLAGVAGAVYIDVKYNVQRLLEIFRVLLEPIYTLDDLRMQLKQPFLM 584 Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + S + V + + A G A+ +AA E +++ Sbjct: 585 LFRLADKHGKQIDFRYSKDGGSRKNIAQVYMDDMFIASGCAKRIDTAKLLAAEEAIQKL 643 Score = 70.7 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 8/111 (7%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M+++ +EK + Y+F N++LL++A+T S ++RLEF GD IL + + + Sbjct: 1 MNSV--EAVEKILNYSFVNKTLLKEAITQKS------PLFDRLEFFGDSILEVAFTNYIC 52 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 + + + K EL + VS E +++A +L F+ + + Sbjct: 53 HTYPNLKVKELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNF 103 Score = 41.8 bits (96), Expect = 0.066, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 6/117 (5%) Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 + + G + K + + EL E Sbjct: 264 KLFEICYTRKLQIQTGSSGNPLTYEMTTKQMVVDKDSLHVEPVNGRGELIEICTKNKWPR 323 Query: 173 PEYKVTFRSGPDHDPRFTVVVE-----ISGLAPAQGMDCSKRA-AEQVAAAEVLKRE 223 P + V GP ++P+F V+ I G +G SK+ AE A +++ Sbjct: 324 PIFSVQEEKGPKNEPKFVCSVKIEIPNIEGTFHMKGDIKSKKKQAENSLAYHMIRAL 380 >gi|83772763|dbj|BAE62891.1| unnamed protein product [Aspergillus oryzae] Length = 1374 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 20/124 (16%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65 +E+++GY F LL A TH S ++ + Y+RLEFLGD +L ++ LF + Sbjct: 1155 KVEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPD 1214 Query: 66 AKEGELSVR------------------FNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 L+ ++VS + +A +L L + +R S+ + Sbjct: 1215 KDPQWLTEHKVSVRLFVSTKHLLTITLQMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQ 1274 Query: 108 CSFM 111 + Sbjct: 1275 ITHY 1278 Score = 44.9 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 38/138 (27%), Gaps = 24/138 (17%) Query: 6 YSTLE--KRIGYAFANRSLLEKALT--------HS----SISHSYQESYERLEFLGDRIL 51 LE K + + +A T H + ++YERLEFLGD L Sbjct: 942 LIALEGCKTLDLSVK-PEYALEAFTKDSDNTEEHRVQQIHVQRGMGKNYERLEFLGDCFL 1000 Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAET---------CSQVARELDLASFIRVSSD 102 + S LF E + V L+ + Q R + Sbjct: 1001 KMATSISLFVQNPDDDEFDFHVNRMCLICNKNLFNTALKKELYQYTRSRGFSRHTWYPDG 1060 Query: 103 LRKDVCSFMTSIQADVVE 120 L + + Sbjct: 1061 LTLLHGRDHRKKISAESK 1078 >gi|289620343|emb|CBI53201.1| unnamed protein product [Sordaria macrospora] Length = 345 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 83/237 (35%), Gaps = 29/237 (12%) Query: 19 NRSLLEKALTHS-SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 + +L + ALTH ++ SYERLE++GD L L+ S+ ++ F + G+ + R Sbjct: 68 DPALKKAALTHPGKANNDPVASYERLEWIGDAYLELIASSFIYQTFPTLPAGKSAQRREM 127 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDV--------CSFMTSIQADVVESLIAALYLD 129 L+ T + + L + + + + I D+ E+ + + L Sbjct: 128 LIRNTTLGEFSVYYGLDNMADIPEEFNMEGRVGGTNASQKVRVKILGDLFEAYVGGVILS 187 Query: 130 GG-------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + + + K + + + K+ ++ Sbjct: 188 DPANGIQRVSDWLKALWGPLMAEYIREEEKKSKSGQAHDPKTILEAAIGARGVKIEYKDL 247 Query: 183 PDHD--------PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 P + P F + ++G L G SK+ A Q AA L+ + + Sbjct: 248 PSKNLKDRGTKLPLFAIGCFMTGWGETNLQLGFGSALSKKEAGQKAAQMALENKKLL 304 >gi|170099920|ref|XP_001881178.1| predicted protein [Laccaria bicolor S238N-H82] gi|164643857|gb|EDR08108.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1469 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 2/94 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62 + +E +GY F ++ LL +ALTH+S SYER+EFLGD IL ++++ L+ Sbjct: 1154 QLVDVESMLGYTFNHKLLLIEALTHASYQQDQYTSSSYERMEFLGDSILDMIVTDYLYRA 1213 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 S V F Sbjct: 1214 PGKEYSPGHMHLRKSAVVNAHFLAFICLRTCLHF 1247 Score = 42.6 bits (98), Expect = 0.038, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 LL A+T S + +++Y+RLE LGD +L + L + + EG L+ + + VS Sbjct: 970 LLMVAITAPS--SNERKNYQRLETLGDTVLKFVCGIQLLSEYPLWHEGYLTRKKDHAVSN 1027 >gi|226355144|ref|YP_002784884.1| hypothetical protein Deide_03100 [Deinococcus deserti VCD115] gi|226317134|gb|ACO45130.1| Conserved hypothetical protein [Deinococcus deserti VCD115] Length = 135 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 23/49 (46%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H+ F VV + G G SK+ AE++AA E L+ G Sbjct: 21 FEVETHGPAHERLFRAVVMVDGQQLGSGEGRSKKDAERLAAEEALQALG 69 >gi|33864688|ref|NP_896247.1| putative ribonuclease III [Synechococcus sp. WH 8102] gi|33632211|emb|CAE06667.1| putative ribonuclease III [Synechococcus sp. WH 8102] Length = 238 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 56/212 (26%), Positives = 87/212 (41%), Gaps = 9/212 (4%) Query: 6 YSTLEKRIGYAFAN-RSLL---EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 +L KR+G + SLL E+A+TH+S + ERLEFLGD +L L + L Sbjct: 9 LKSLIKRLGLEDMDSPSLLLEVERAMTHTS--SGRTDHNERLEFLGDAVLRLAATLYLDR 66 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H G+ S LVS +++ +D+ S + + D + T Sbjct: 67 HHPGLTVGDSSSLRAQLVSDRWLAELGEAIDIESCLILGVKALGDAAARTTIRADATEAL 126 Query: 122 LIAALYLDGGIEVA--GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + A + G +E + + R + KT LQEW+ + PEY Sbjct: 127 IGALYKVSGSLEPILGWLTPHWQRTSADVLAAPHRFNGKTTLQEWSQGQGLGLPEYSTEE 186 Query: 180 RSGPDHDP-RFTVVVEISGLAPAQGMDCSKRA 210 RS DP RF V ++ A+G S++ Sbjct: 187 RSQVHGDPQRFRSTVRVASKVLAEGHGRSRKE 218 >gi|195995859|ref|XP_002107798.1| hypothetical protein TRIADDRAFT_51673 [Trichoplax adhaerens] gi|190588574|gb|EDV28596.1| hypothetical protein TRIADDRAFT_51673 [Trichoplax adhaerens] Length = 1418 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 1/109 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F N L A THSS +YE+LEF+GD IL L+ LF Sbjct: 1221 KLHKFEENLGYKFINIDYLILAFTHSSSEFGDSFNYEKLEFVGDSILNYLVIKYLF-LAT 1279 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 + +S E ++ + S +++ + F Sbjct: 1280 DQDITRSKFFYGIAISNEVYGLLSYAYNFHHLFYQSPFVKEMILGFEKK 1328 >gi|225554674|gb|EEH02970.1| RNase3 domain-containing protein [Ajellomyces capsulatus G186AR] Length = 380 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 80/218 (36%), Gaps = 22/218 (10%) Query: 23 LEKA-LTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 L+ A TH + + +++YER+E LGD + ++ + L+++ F G LS Sbjct: 139 LQTAMFTHEGVHNPNTAPLPEKNYERMELLGDAYIEIIATRLVWDTFPRLPAGRLSQIRE 198 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 LV ET ++ L ++V ++R T I+ D+ E+ +AA+ L Sbjct: 199 LLVKNETLAEYTSLYGLDQKLQVPPNIRDQ-AKTWTKIKGDLFEAYVAAVILSNREYGVQ 257 Query: 137 TFVDKYWKQRAL--------KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 D + K ++ +L K E + SG Sbjct: 258 LAEDWLTQLWIPKLEQIEKDKPMLRYKEDLAKLVMDKGIKLSYLDEKQSICHSG--GLQT 315 Query: 189 FTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V V + G SK A AA + L+ Sbjct: 316 FFVGVYLTGWGHKNECLGSGTGFSKVIAGNEAARKALE 353 >gi|317035030|ref|XP_001400925.2| ATP-dependent helicase dcl2 [Aspergillus niger CBS 513.88] Length = 1407 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62 L L IGY F N+SLL ++LTH S + +SY+RLEFLGD +L + I + L +H Sbjct: 1092 LNDDHLMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQRLEFLGDAVLDMAIMSTLLSH 1151 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVAREL 91 +G ++ +++V+A + E Sbjct: 1152 PREIPQGLMTKIKHAVVNANLLAFFCMEF 1180 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 5/179 (2%) Query: 10 EKRI-GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E + F++ + A+T S +Y+R EF GD +L +S LF + E Sbjct: 920 ETILRDLEFSSIRHIITAITAPSAQS--LTNYQRYEFFGDSVLKFTVSCQLFFQHPNWHE 977 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAAL 126 G LS + +V ++ A + L +FI ++ + + I + ++ Sbjct: 978 GYLSEGRDEIVQNSRLARAALDAGLDAFIMNKMFTPRKWSAPLISEKISLTPKQRTMSTK 1037 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 L +E A + R + L+ + + DH Sbjct: 1038 VLADVVEALIGASYIDGGFAAAHACIHRFLPEVNLENIDRTTAPMPKDGVTNHTLNDDH 1096 >gi|158706449|sp|A2R345|DCL21_ASPNC RecName: Full=Dicer-like protein 2-1; Includes: RecName: Full=Endoribonuclease dcl2-1; Includes: RecName: Full=ATP-dependent helicase dcl2-1 Length = 1387 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62 L L IGY F N+SLL ++LTH S + +SY+RLEFLGD +L + I + L +H Sbjct: 1092 LNDDHLMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQRLEFLGDAVLDMAIMSTLLSH 1151 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVAREL 91 +G ++ +++V+A + E Sbjct: 1152 PREIPQGLMTKIKHAVVNANLLAFFCMEF 1180 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 5/179 (2%) Query: 10 EKRI-GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E + F++ + A+T S +Y+R EF GD +L +S LF + E Sbjct: 920 ETILRDLEFSSIRHIITAITAPSAQS--LTNYQRYEFFGDSVLKFTVSCQLFFQHPNWHE 977 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAAL 126 G LS + +V ++ A + L +FI ++ + + I + ++ Sbjct: 978 GYLSEGRDEIVQNSRLARAALDAGLDAFIMNKMFTPRKWSAPLISEKISLTPKQRTMSTK 1037 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 L +E A + R + L+ + + DH Sbjct: 1038 VLADVVEALIGASYIDGGFAAAHACIHRFLPEVNLENIDRTTAPMPKDGVTNHTLNDDH 1096 >gi|134081603|emb|CAK46537.1| unnamed protein product [Aspergillus niger] Length = 1352 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62 L L IGY F N+SLL ++LTH S + +SY+RLEFLGD +L + I + L +H Sbjct: 1057 LNDDHLMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQRLEFLGDAVLDMAIMSTLLSH 1116 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVAREL 91 +G ++ +++V+A + E Sbjct: 1117 PREIPQGLMTKIKHAVVNANLLAFFCMEF 1145 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 5/179 (2%) Query: 10 EKRI-GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E + F++ + A+T S +Y+R EF GD +L +S LF + E Sbjct: 885 ETILRDLEFSSIRHIITAITAPSAQS--LTNYQRYEFFGDSVLKFTVSCQLFFQHPNWHE 942 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAAL 126 G LS + +V ++ A + L +FI ++ + + I + ++ Sbjct: 943 GYLSEGRDEIVQNSRLARAALDAGLDAFIMNKMFTPRKWSAPLISEKISLTPKQRTMSTK 1002 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 L +E A + R + L+ + + DH Sbjct: 1003 VLADVVEALIGASYIDGGFAAAHACIHRFLPEVNLENIDRTTAPMPKDGVTNHTLNDDH 1061 >gi|326533632|dbj|BAK05347.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 381 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 87/240 (36%), Gaps = 25/240 (10%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + +E+ + Y F +RSLL++ALTH S S SY+RLEF+GD LGL S L+ Sbjct: 44 ARVERLLQYRFRDRSLLDEALTHQSFSGGAGGAASYQRLEFVGDAALGLAFSNFLYLTNP 103 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + G LS + +S E ++VA DL +R + + +E + Sbjct: 104 TVGPGALSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIESVKQELEDDLG 163 Query: 125 ALYLDGGIEVAGT------------FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 G + A R + + + V+ Sbjct: 164 ITPYGGSVFKAPKVLADIVEAIAAAVYVDCKFNIEELWKVTRFLFEPIVTAETIDEQPVS 223 Query: 173 PEYKVTFRSGPDHD-------PRFTVVVEISGLAPAQGMDCSKR--AAEQVAAAEVLKRE 223 +++ + G D V V + G+ G S++ A+ A + L + Sbjct: 224 TLHELCQKHGKDIKFKSWQKGGTTVVNVFVGGVLV--GTGSSEQMGIAKLNATRDALSKL 281 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS---GLAPAQGMDCSK-RA 210 R+ K +L + + K P +K+ GP HD F V++ G+ G S+ + Sbjct: 306 RECKKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKD 365 Query: 211 AEQVAAAEVLKRE 223 AE A ++L+ Sbjct: 366 AENSGAQKMLEHL 378 >gi|326497771|dbj|BAK05975.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 379 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 87/240 (36%), Gaps = 25/240 (10%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64 + +E+ + Y F +RSLL++ALTH S S SY+RLEF+GD LGL S L+ Sbjct: 42 ARVERLLQYRFRDRSLLDEALTHQSFSGGAGGAASYQRLEFVGDAALGLAFSNFLYLTNP 101 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + G LS + +S E ++VA DL +R + + +E + Sbjct: 102 TVGPGALSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIESVKQELEDDLG 161 Query: 125 ALYLDGGIEVAGT------------FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 G + A R + + + V+ Sbjct: 162 ITPYGGSVFKAPKVLADIVEAIAAAVYVDCKFNIEELWKVTRFLFEPIVTAETIDEQPVS 221 Query: 173 PEYKVTFRSGPDHD-------PRFTVVVEISGLAPAQGMDCSKR--AAEQVAAAEVLKRE 223 +++ + G D V V + G+ G S++ A+ A + L + Sbjct: 222 TLHELCQKHGKDIKFKSWQKGGTTVVNVFVGGVLV--GTGSSEQMGIAKLNATRDALSKL 279 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS---GLAPAQGMDCSK-RA 210 R+ K +L + + K P +K+ GP HD F V++ G+ G S+ + Sbjct: 304 RECKKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKD 363 Query: 211 AEQVAAAEVLKRE 223 AE A ++L+ Sbjct: 364 AENSGAQKMLEHL 376 >gi|52550203|gb|AAU84052.1| ribonuclease III [uncultured archaeon GZfos36D8] Length = 262 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 23/243 (9%) Query: 2 SALRYS--TLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57 +++ LE IG+ F N +LLE+A+T S S+ + +Y+ LEFLGDR+L L+++ Sbjct: 10 ENIKFELMELEASIGHQFKNIALLEEAITTGSYSNEHPGSSNYQTLEFLGDRVLSLILAE 69 Query: 58 LLFNHFDSAKEG--ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 LF SA +++ L + ++ + L ++IR + + + Sbjct: 70 ELFKLSKSASLDEGKMTFLKAELENNLRLAEYGENIGLRNYIRANEKREDIRPKVIADVF 129 Query: 116 ADVVESLIA-ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 + ++ EV + +R K + ++ + Sbjct: 130 EAICGAIYLDTEESIRIKEVKKFLLKFEILERIKKEMSSGKGFLPIRNQFENKFREKHRC 189 Query: 175 YKVTFRS-----GPDHDPRFTVV-VEISGLAPAQ-----G-----MDCSKRAAEQVAAAE 218 G +H R+ + I + + G SK+ AE A + Sbjct: 190 NPEIKFEQKSTLGEEHPTRWRIEKCSIKDIQTGEYVELKGVKSDKWFSSKKDAETDAFEQ 249 Query: 219 VLK 221 K Sbjct: 250 AYK 252 >gi|299747526|ref|XP_001837094.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130] gi|298407559|gb|EAU84711.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130] Length = 1499 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 46/91 (50%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E IG+ F LL + LTH+S+ S +YERLEF+GD IL ++ +F+ + Sbjct: 1210 IEAVEGIIGHRFQQPHLLAQILTHTSVHGSKVLTYERLEFIGDAILDFMVIRHIFDRERT 1269 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASF 96 G L++ ++V+ T + V + Sbjct: 1270 LSPGGLTMLKGAMVANSTLATVCILSGIYKH 1300 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 7/107 (6%) Query: 11 KRIGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 K + F + LL A T S + +YERLE LGD L L S ++F + Sbjct: 958 KELNMQFFDNAIDEELLYMATTTVSAEMEH--NYERLELLGDAFLKYLASVVVFVMNPTQ 1015 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 EG L V L+S + A ++ L ++ S S Sbjct: 1016 NEGSLHVARQRLISNKALLACATQVGLPAY-ICSKPFLLRGWRPWPS 1061 >gi|302685924|ref|XP_003032642.1| hypothetical protein SCHCODRAFT_53921 [Schizophyllum commune H4-8] gi|300106336|gb|EFI97739.1| hypothetical protein SCHCODRAFT_53921 [Schizophyllum commune H4-8] Length = 368 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 78/217 (35%), Gaps = 16/217 (7%) Query: 20 RSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 L+++A TH+S +E + +LE +G+ ++GL S L + Sbjct: 75 PELVQQACTHASFVALQKEVNPNAPAPATNAQLEQVGNALMGLFASEYLAAKYPYLPTKV 134 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL------IA 124 L + V TC+ VA+E+ +R + + ++ + D + S+ + Sbjct: 135 LKAAVTAHVGPLTCANVAQEMGATQLLRWNRTISRNPSHPQVMLHTDALASIPRALTALI 194 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP- 183 +Q L+S R+ K L + P ++ +G Sbjct: 195 YQKRSLPAARQFVHSFFLSRQVDLRSMLKFRNPKWALLQLVRKFDRERPVSRLLKETGRF 254 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + P + V V +G S + AE AA + L Sbjct: 255 SNSPVYLVGVFSGEEQIGEGFGSSLKMAEYRAAEDAL 291 >gi|296081735|emb|CBI20740.3| unnamed protein product [Vitis vinifera] Length = 1688 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 1/114 (0%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLF 60 A LE +IGY F+ + LL +A+TH++ Y+RLEFLGD +L +LI+ L+ Sbjct: 1262 KANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLITWHLY 1321 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 GEL+ ++ V+ E+ +QVA +L ++ S L Sbjct: 1322 QSHRDIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKY 1375 Score = 41.5 bits (95), Expect = 0.084, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 SL+ +A+T ++ S S ERLE LGD +L +S LF + EG+LS R + +V Sbjct: 1072 SLILEAIT--TLRCSESFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVC 1129 Query: 81 AETCSQVARELDLASFIR 98 T ++ + L +IR Sbjct: 1130 NSTLHKLGTDRSLQGYIR 1147 >gi|240277023|gb|EER40533.1| RNase3 domain-containing protein [Ajellomyces capsulatus H143] gi|325094961|gb|EGC48271.1| RNase3 domain-containing protein [Ajellomyces capsulatus H88] Length = 380 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 81/218 (37%), Gaps = 22/218 (10%) Query: 23 LEKA-LTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 L+ A TH + + +++YER+E LGD + ++ + L+++ F G LS Sbjct: 139 LQTAMFTHEGVHNPNTASLPEKNYERMELLGDAYIEIIATRLVWDTFPRLPAGRLSQIRE 198 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 LV ET ++ L ++V ++R T I+ D+ E+ +AA+ L Sbjct: 199 LLVKNETLAEYTSLYGLDQKLQVPPNIRDQ-VKTWTKIKGDLFEAYVAAVILSNRDNGVQ 257 Query: 137 TFVDKYWKQRALKSGK--------FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 D + K + ++ +L K E + SG Sbjct: 258 LAEDWLTQLWIPKLEQIEKDKPVLRYKEDLAKLVMDKGIKLSYLDEKQSICHSG--GLQT 315 Query: 189 FTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V V + G SK A AA + L+ Sbjct: 316 FFVGVYLTGWGHKNECLGSGTGFSKVIAGNEAARKALE 353 >gi|225429722|ref|XP_002280293.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1661 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 1/114 (0%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLF 60 A LE +IGY F+ + LL +A+TH++ Y+RLEFLGD +L +LI+ L+ Sbjct: 1235 KANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLITWHLY 1294 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 GEL+ ++ V+ E+ +QVA +L ++ S L Sbjct: 1295 QSHRDIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKY 1348 Score = 41.5 bits (95), Expect = 0.084, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 SL+ +A+T ++ S S ERLE LGD +L +S LF + EG+LS R + +V Sbjct: 1045 SLILEAIT--TLRCSESFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVC 1102 Query: 81 AETCSQVARELDLASFIR 98 T ++ + L +IR Sbjct: 1103 NSTLHKLGTDRSLQGYIR 1120 >gi|322510548|gb|ADX05862.1| putative ribonuclease III [Organic Lake phycodnavirus 1] Length = 293 Score = 73.0 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 91/276 (32%), Gaps = 55/276 (19%) Query: 3 ALRYSTLEKRIG-----YAFANRSLLEKALTHSSISHSYQ---------------ESYER 42 ++ + +E+ + + + + E+A +SS S ER Sbjct: 14 KIKKTDIEQILRNYHIYHKVKHMEIWERAFVNSSYIKQPNIMYSSCPFNCLELKQSSNER 73 Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 LEF+GD IL L+ L+ F A EG ++ + +LV + ++A +L L ++ +S Sbjct: 74 LEFIGDGILELITKYYLYKRFPDADEGFMTEKKINLVKNDHIGKLAYKLGLHKYLLLSKQ 133 Query: 103 LRKDVCSFMTSIQADVVESLIAALYLD-----------GGIEVAGTFVDKYWKQRALKSG 151 + + ES + AL+LD G + + + Sbjct: 134 SEEKKNRCNYKKLGCLFESFLGALFLDTNETQDELFLMGNGIQYCQLFIENVFNKLVDWT 193 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS--------------- 196 + + + D + R+T+ V + Sbjct: 194 EILENDDNYKNIFQVKIQKEFKCTPEYKIIQQDEELRYTMGVYLYLNSKDTSSTKFELIK 253 Query: 197 ---------GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + G+ K+ AEQ+A + LK+ Sbjct: 254 NLEHIKPNTNVHFGTGVHKIKKKAEQLACLDALKKI 289 >gi|196229195|ref|ZP_03128060.1| Ribonuclease III [Chthoniobacter flavus Ellin428] gi|196226427|gb|EDY20932.1| Ribonuclease III [Chthoniobacter flavus Ellin428] Length = 152 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 3/131 (2%) Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRR 155 + S +D E+LI A+YLD V + L+ Sbjct: 1 MMGRGEESSGGRERASTLSDAFEALIGAMYLDSDFVTVRRIVLTESRDLLEDLEVDPPDT 60 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + K LQE A ++P Y + +SGP+H RF + G G SK+ AE A Sbjct: 61 NPKGRLQELLQAISPISPTYPIVDQSGPEHQKRFVAKIVWDGKELGSGDGRSKKEAETAA 120 Query: 216 AAEVLKREGIW 226 A + L +E +W Sbjct: 121 ARDALSKE-LW 130 >gi|261749614|ref|YP_003257300.1| ribonuclease III [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497707|gb|ACX84157.1| ribonuclease III [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 251 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 87/226 (38%), Gaps = 8/226 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALT------HSSISHSYQESYERLEFLGDRILGLLI 55 +++ S L+K +G+ N LL+ ++ +Y ++RLEFLGD +L +I Sbjct: 14 NSILVSRLKKILGFCPKNLKLLKDVFIYSFSTKRKTLDKNYFLDFQRLEFLGDAVLNSII 73 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 S L KEGEL+ + +V + ++++++L LA ++ +++ Sbjct: 74 SHFLCEKLPEKKEGELTQVRSKIVCRKNLNEISKKLTLAEVFFQNNQPIISENILGNTLE 133 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 A + + Y V + + L++ + + Sbjct: 134 ALIGFIYLEIGYQGCKNFVYKKILHYHVNITQLQNEISSYKVWVIEWSQKNKFIINFNTF 193 Query: 176 KVTFRSGPD-HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219 + T + H + IS +G SK+ +E++AA Sbjct: 194 RETKEEIENKHVITYFSEFTISRCGIKTEGRGPSKKKSEEMAAKAA 239 >gi|167046016|gb|ABZ10539.1| dicer-like protein A [Trichoplax adhaerens] Length = 351 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 1/109 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F N L A THSS +YE+LEF+GD IL L+ LF Sbjct: 181 KLHKFEENLGYKFINIDYLILAFTHSSSEFGDSFNYEKLEFVGDSILNYLVIKYLF-LAT 239 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 + +S E ++ + S +++ + F Sbjct: 240 DQDITRSKFFYGIAISNEVYGLLSYAYNFHHLFYQSPFVKEMILGFEKK 288 >gi|167046018|gb|ABZ10540.1| dicer-like protein A [Placozoa sp. DMJ-2008] Length = 351 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 1/109 (0%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + E+ +GY F N L A THSS +YE+LEF+GD IL L+ LF Sbjct: 181 KLHKFEENLGYKFINIDYLILAFTHSSSEFGDSFNYEKLEFVGDSILNYLVIKYLF-LAT 239 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 + +S E ++ + S +++ + F Sbjct: 240 DQDITRSKFFYGIAISNEVYGLLSYAYNFHHLFYQSPFVKEMILGFEKK 288 >gi|293410983|ref|ZP_06654559.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B354] gi|291471451|gb|EFF13935.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B354] Length = 189 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 58/173 (33%), Positives = 85/173 (49%), Gaps = 3/173 (1%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD IL +I+ L++ F EG++S +LV T +++ARE +L +R+ Sbjct: 1 ERLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLG 60 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAK 158 K SI AD VE+LI ++LD I+ + + G ++D K Sbjct: 61 PGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPK 120 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 T LQE+ + P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 TRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 173 >gi|156845983|ref|XP_001645880.1| hypothetical protein Kpol_1045p6 [Vanderwaltozyma polyspora DSM 70294] gi|156116550|gb|EDO18022.1| hypothetical protein Kpol_1045p6 [Vanderwaltozyma polyspora DSM 70294] Length = 478 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 72/231 (31%), Gaps = 24/231 (10%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 + S+ K H S ERLEFLGD +L +++ +++N F + Sbjct: 192 EIKDPSIRAKVFIHKSTIKDKLYLKESEMINAHNERLEFLGDSVLNTIMTMIIYNKFPTF 251 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG+LS +LVS E + ++ + DL D F Q + A + Sbjct: 252 TEGQLSKLRMNLVSNERIKSWTYLYNFDKKLKTNFDLGNDKSHFQNGKQKLYADVFEAYI 311 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD-- 184 + L + ++ + + ++ G Sbjct: 312 GGLIEDDPKHNMPKVRKWLTKLSKPIINEVMQKDVSLETTENIDLNAKRQLYSIIGYAAL 371 Query: 185 --H----------DPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H DP V I G G + + A AA VL+ Sbjct: 372 NLHYEPVKRPTRDDPISIVECRIDDGTVLGVGKGRNVKIAGLCAAQNVLRN 422 >gi|332644323|gb|AEE77844.1| protein dicer-like 3 [Arabidopsis thaliana] Length = 1570 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 2/99 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 LE++I + F+ + LL++A+THSS+ SY SYERLEFLGD +L LI+ LFN Sbjct: 1184 KEDELIELERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFN 1241 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ++ GE++ ++ V+ E +QVA + +L + ++ Sbjct: 1242 TYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRC 1280 Score = 36.8 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 7 STLEKRIGYAFANRSL----LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 S L + I + N S+ + +A+T +++ S ERLE LGD +L + S LF Sbjct: 976 SQLREEIDCSIDNFSISSTSILEAVT--TLTCPESFSMERLELLGDSVLKYVASCHLFLK 1033 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 + EG+LS + S++S ++ L +IR Sbjct: 1034 YPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRN 1070 >gi|238479965|ref|NP_001154663.1| ribonuclease III family protein [Arabidopsis thaliana] gi|322518661|sp|Q9LXW7|DCL3_ARATH RecName: Full=Endoribonuclease Dicer homolog 3; AltName: Full=Dicer-like protein 3; Short=AtDCL3 gi|332644322|gb|AEE77843.1| protein dicer-like 3 [Arabidopsis thaliana] Length = 1580 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 2/99 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 LE++I + F+ + LL++A+THSS+ SY SYERLEFLGD +L LI+ LFN Sbjct: 1194 KEDELIELERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFN 1251 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ++ GE++ ++ V+ E +QVA + +L + ++ Sbjct: 1252 TYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRC 1290 Score = 36.8 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 7 STLEKRIGYAFANRSL----LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 S L + I + N S+ + +A+T +++ S ERLE LGD +L + S LF Sbjct: 986 SQLREEIDCSIDNFSISSTSILEAVT--TLTCPESFSMERLELLGDSVLKYVASCHLFLK 1043 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 + EG+LS + S++S ++ L +IR Sbjct: 1044 YPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRN 1080 >gi|238479963|ref|NP_001154662.1| ribonuclease III family protein [Arabidopsis thaliana] Length = 1577 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 2/99 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 LE++I + F+ + LL++A+THSS+ SY SYERLEFLGD +L LI+ LFN Sbjct: 1191 KEDELIELERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFN 1248 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ++ GE++ ++ V+ E +QVA + +L + ++ Sbjct: 1249 TYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRC 1287 Score = 36.8 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 7 STLEKRIGYAFANRSL----LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 S L + I + N S+ + +A+T +++ S ERLE LGD +L + S LF Sbjct: 983 SQLREEIDCSIDNFSISSTSILEAVT--TLTCPESFSMERLELLGDSVLKYVASCHLFLK 1040 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 + EG+LS + S++S ++ L +IR Sbjct: 1041 YPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRN 1077 >gi|15229816|ref|NP_189978.1| ribonuclease III family protein [Arabidopsis thaliana] gi|7594553|emb|CAB88120.1| putative protein [Arabidopsis thaliana] gi|94450858|gb|ABF19799.1| dicer-like 3 [Arabidopsis thaliana] gi|332644321|gb|AEE77842.1| protein dicer-like 3 [Arabidopsis thaliana] Length = 1531 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 2/99 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 LE++I + F+ + LL++A+THSS+ SY SYERLEFLGD +L LI+ LFN Sbjct: 1145 KEDELIELERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFN 1202 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ++ GE++ ++ V+ E +QVA + +L + ++ Sbjct: 1203 TYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRC 1241 Score = 36.8 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 7 STLEKRIGYAFANRSL----LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 S L + I + N S+ + +A+T +++ S ERLE LGD +L + S LF Sbjct: 937 SQLREEIDCSIDNFSISSTSILEAVT--TLTCPESFSMERLELLGDSVLKYVASCHLFLK 994 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 + EG+LS + S++S ++ L +IR Sbjct: 995 YPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRN 1031 >gi|75907020|ref|YP_321316.1| ribonuclease III [Anabaena variabilis ATCC 29413] gi|75700745|gb|ABA20421.1| RNAse III [Anabaena variabilis ATCC 29413] Length = 242 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 8/211 (3%) Query: 5 RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + +L +++G LL+ ALTH ++S +YE+LEF+GD ++ L + +L+ Sbjct: 11 QLESLVRKLGLPTTAPIKWELLDLALTHPTVSE--SANYEQLEFVGDAVVRLAAAVMLWE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + G+ + + LVS +Q+ARE L + V+ D + + Sbjct: 69 TYPDCPVGDFAAIRSVLVSDRILAQLAREYGLELHLLVAGSATSDKIGQESRLADAFEAV 128 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L A +E+ ++D +++Q ++ R + K LQEW A+F V PEY+V Sbjct: 129 LGALYLSTSNLELIRPWLDHHFRQLAAEIRLDPARLNYKAALQEWTQAQFKVLPEYRVVE 188 Query: 180 RSGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209 + + RF V + G +G S + Sbjct: 189 INQANRTQERFAAEVWLHGNKLGEGKGRSIK 219 >gi|325685925|gb|EGD27990.1| ribonuclease III [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 154 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 52/152 (34%), Gaps = 1/152 (0%) Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 +++V E S+VA + I + K ++ DV E+ AL+LD GI Sbjct: 1 RLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALLEDVFEAFNGALFLDQGI 60 Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 E F+ + + + G P F V Sbjct: 61 EAVEKFLRQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVLNESQQP-PHFEVE 119 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V + G A G +K+ AEQ AA+ L+ Sbjct: 120 VLVDGKKLASGEGRNKKKAEQDAASHALEHLN 151 >gi|299754132|ref|XP_002911949.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130] gi|298410618|gb|EFI28455.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130] Length = 1457 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + TL++R+GY F + S+L +A+TH S + SY+RLEFLGD IL L++ L+ F Sbjct: 1121 FDTLQERLGYTFHSNSILVEAVTHPSFATD-GPSYQRLEFLGDAILDLVVVHYLYEKFPE 1179 Query: 66 AKEGELSVRFNSLVSAET 83 A +LS+ ++ A T Sbjct: 1180 ANSHQLSLLRAKVICAPT 1197 Score = 42.6 bits (98), Expect = 0.037, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 + F +L ++LT + S +RLE LGD +L L + LFN + + EG+L+ Sbjct: 949 LRLPFIEDKILIESLTIP--AALLAFSNQRLETLGDAVLQLCTTVHLFNQYPNRHEGQLT 1006 Query: 73 VRFNSLVSAETCSQVARELDLASFIR 98 + VS + Q A E+ L +I Sbjct: 1007 TLRRATVSNKFLLQRALEMGLEEYIT 1032 >gi|149234499|ref|XP_001523129.1| hypothetical protein LELG_05675 [Lodderomyces elongisporus NRRL YB-4239] gi|146453238|gb|EDK47494.1| hypothetical protein LELG_05675 [Lodderomyces elongisporus NRRL YB-4239] Length = 729 Score = 72.7 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 16/221 (7%) Query: 17 FANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 + +L EK H S ++ + ERLEF GD IL LI+ +++N F + Sbjct: 356 IRDSALYEKVFVHKSTVNNRTYLGSDALIHKHNERLEFYGDSILNNLITIIIYNKFPNNT 415 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 EGELS ++++ ++A + +R D I ADV E+ I AL Sbjct: 416 EGELSKIRAAMINNRVLKEIAVDYGFDKKLRTRIDQDVLNL-GEQKIYADVFEAYIGALG 474 Query: 128 LDGGI---EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 L+ EV Y K+ A ++ +D + T + T++ Sbjct: 475 LERQFDLKEVKDWLEILYAKRIADLQREYIKDPLDRDAKAELYSMIGTGDLHPTYKVHSA 534 Query: 185 HDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 D + V ++ +G+ +++ A AA LK Sbjct: 535 GDGIHTDYVVDCFMNREFLGRGIAVNQKEASLRAAMNALKN 575 >gi|254411973|ref|ZP_05025748.1| RNase3 domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180939|gb|EDX75928.1| RNase3 domain protein [Microcoleus chthonoplastes PCC 7420] Length = 317 Score = 72.7 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 4/140 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFN 61 +LE +IG F + L AL H S + +++ ERL+FLGD I+ L+I+ L++ Sbjct: 4 NSESLENQIGIQFKHSDTLRLALMHRSYAEQIGESEQNNERLKFLGDAIVNLVITDYLYH 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + LV + +++ +L L L ++ E+ Sbjct: 64 NCPYLEVSNFKGLRDKLVEGQRLTKLWYQLGLGE-GYPFLGLTQERHRLRLQNHNPFEEA 122 Query: 122 LIAALYLDGGIEVAGTFVDK 141 LIA + + Sbjct: 123 LIALVGAIHQDRGFSQARNW 142 >gi|168061351|ref|XP_001782653.1| predicted protein [Physcomitrella patens subsp. patens] gi|162665886|gb|EDQ52556.1| predicted protein [Physcomitrella patens subsp. patens] Length = 514 Score = 72.7 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 93/263 (35%), Gaps = 44/263 (16%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSI------------------------------ 32 L+ L +++G + +R LL + L H S Sbjct: 245 NLQLQILTEKLGCSIHSRELLLRILVHKSYYLSKMPQSVKEKKLRKPLMSWQRSGTVEDN 304 Query: 33 ----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 + ++ E+ +L +GD +L L+ ST L + G ++ R + LV ++ Sbjct: 305 LMTFADAHAEARLKLALIGDTVLNLVASTHLIRQYPLLSTGSITERRSQLVCNSNLARAW 364 Query: 89 REL--------DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 L R + AD +E+ I LY++ G+E FV+ Sbjct: 365 CTLLDLRELVLCDPLLSRSKKASATALLENQMKACADTLEAYIGGLYVEKGLESTLQFVE 424 Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD-HDPRFTVVVEISGLA 199 L K R+ T L + P+YK+ + + + V + G Sbjct: 425 TRLL-PLLLLAKPTRNPVTILHDRCAMVLQEKPDYKLIGVDNQNTPNESCRIRVYVKGFR 483 Query: 200 PAQGMDCSKRAAEQVAAAEVLKR 222 + G+ S+R A Q AA + L + Sbjct: 484 LSTGIGKSQRLARQDAAEKALLK 506 >gi|242215871|ref|XP_002473747.1| predicted protein [Postia placenta Mad-698-R] gi|220727142|gb|EED81071.1| predicted protein [Postia placenta Mad-698-R] Length = 1725 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 44/75 (58%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ L++ +GY F + LL +A+TH S + SY+RLEFLGD ++ L + L+N F Sbjct: 1116 FTLLQESLGYRFRSGRLLLEAMTHPSFNSFETSSYQRLEFLGDAVVDLAVMRYLYNKFPQ 1175 Query: 66 AKEGELSVRFNSLVS 80 A G+LS + V Sbjct: 1176 ATSGQLSWARSRAVC 1190 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LL +ALT S + + + +RLE LGD +L L LFN F EG+L + VS Sbjct: 949 DLLIQALTIPSANAGF--NNQRLETLGDSVLKLTTVVHLFNRFPFRHEGQLDTLRRNSVS 1006 Query: 81 AETCSQVARELDLASFIRVSSDLR 104 T A+E+ L ++ S Sbjct: 1007 NRTLLARAKEVGLEEYLSCESQSM 1030 >gi|499371|gb|AAA21843.1| RNase III [Escherichia coli] Length = 45 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 3/48 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGD 48 M+ + + L++++GY F ++ LL++ALTH S S + ERLEFLGD Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGD 45 >gi|255720468|ref|XP_002556514.1| KLTH0H15180p [Lachancea thermotolerans] gi|238942480|emb|CAR30652.1| KLTH0H15180p [Lachancea thermotolerans] Length = 494 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 76/231 (32%), Gaps = 25/231 (10%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 N ++ + H S+ + + ERLEFLGD IL I+ +L+N F Sbjct: 191 EIKNSAIKARVFIHKSMINDKLYLSEHDMIKAHNERLEFLGDSILNTTITMILYNKFPHL 250 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC---SFMTSIQADVVESLI 123 EG+LS L+S E + + +R + D + + ADV E+ I Sbjct: 251 SEGQLSKLRMKLISNERLKKWSFLYKFNEKLRTNLDKTCENNDFKHGKQKLYADVFEAYI 310 Query: 124 AALYLDGGIEVAGTFVDK------------YWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 L D + K L + +AK L Sbjct: 311 GGLIEDDPKHNLPKVRKWLSKLASPVIEEEFKKDDDLDVNEVDINAKKTLYSLIGYAALN 370 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + S D + ++ G G + + A AA +VL+ Sbjct: 371 LHYKPIQKPSSEDSNALVECRIK-DGTVLGVGKGRNIKIAGMRAAQQVLQN 420 >gi|73953910|ref|XP_868231.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 3 [Canis familiaris] Length = 1282 Score = 72.3 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 5/165 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1103 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1162 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F EG L++ +SLV+ T ++VA EL + + + ++ V T AD++ES Sbjct: 1163 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALR-TKTLADLLESF 1221 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA 165 IAALY+D +E TF++ + R + D K++LQ+ Sbjct: 1222 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1266 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 52/96 (54%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 954 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1013 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + S + A+ E+LI A+YL+G +E Sbjct: 1014 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLE 1049 Score = 43.8 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 870 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 900 >gi|58040241|ref|YP_192205.1| ribonuclease III [Gluconobacter oxydans 621H] gi|58002655|gb|AAW61549.1| Ribonuclease III [Gluconobacter oxydans 621H] Length = 174 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 1/170 (0%) Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ++ L + +EG L R LVS +++A ++ L++ +++S ++SI Sbjct: 1 MAEWLLERYPDEQEGALGPRHAHLVSRTVLAEIADQVGLSASLQISPHEEDAGIRRLSSI 60 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 +AD +E+L+ ALYLDGG+E A V +YW+ R + + ++ KT LQE+ ++ P Sbjct: 61 RADAMEALLGALYLDGGLEPARRVVHQYWQSRIESADRPHKEPKTLLQEYMLSQGLPLPH 120 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 Y++ GP H P F V V G G SKR AE AA +LK G Sbjct: 121 YELLSSDGPSHAPVFRVSVTTMGHT-GTGEAGSKRLAESAAATALLKHLG 169 >gi|159027736|emb|CAO89606.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 234 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 50/207 (24%), Positives = 96/207 (46%), Gaps = 8/207 (3%) Query: 5 RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + TL +++G + LL+ ALTH S+S ++YE+LEF+GD ++ L+ + +L Sbjct: 11 QLKTLVEKLGLSADVPVRWDLLDLALTHPSVSRD--KNYEQLEFVGDSVVRLVAAEVLLE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + A GE + + +VS T ++ A ++ VSS D ++ + Sbjct: 69 TYPEALVGEFAALRSMMVSDRTLAEFADRYGFERYLLVSSSTSIDRAGRISRLADAFEAV 128 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L A + + +++D+ +++ ++ R++ K LQEW AK+ P+Y V Sbjct: 129 LGALYLSTQTMILVRSWLDEPLREKAAEIRRDPARQNYKDALQEWTQAKYKKLPQYLVKE 188 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDC 206 +G D + F V ++ G Sbjct: 189 INGLDQER-FCAEVWLNEQKLGVGTGR 214 >gi|260945020|ref|XP_002616808.1| hypothetical protein CLUG_04049 [Clavispora lusitaniae ATCC 42720] gi|238850457|gb|EEQ39921.1| hypothetical protein CLUG_04049 [Clavispora lusitaniae ATCC 42720] Length = 406 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 78/223 (34%), Gaps = 17/223 (7%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 N L + H S S + ERLEFLGD +L L++ +L+ F A Sbjct: 58 KIRNAHLRARVFQHKSTSANKTYLAEQEIVSSHNERLEFLGDSVLNTLVTFILYEKFPFA 117 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG LS +SLVS +T ++ + + +R D I AD+ E+ + AL Sbjct: 118 NEGLLSQIRSSLVSNKTLAEFSTQYGFDQSLRCKVDESALRN-GKQKIFADIFEAYVGAL 176 Query: 127 YLDGGIEVAGTFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 ++ G ++ K + + + T ++ Sbjct: 177 AMERGFDMNEVQQWLKALMASKLSEADLAIKKATPINKDAKTELYSLVGTASLHPIYKVV 236 Query: 183 PDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + F V + +G+ R A AA LK Sbjct: 237 QNGNGVQSLFKVQCVMEDNVLGEGVAPGLRDAGLRAAMAALKN 279 >gi|154276932|ref|XP_001539311.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150414384|gb|EDN09749.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 380 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 47/217 (21%), Positives = 81/217 (37%), Gaps = 22/217 (10%) Query: 23 LEKA-LTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 L+ A TH + + +++YER+E LGD + ++ + L+++ F G LS Sbjct: 139 LQTAMFTHEGVHNPNTASLPEKNYERMELLGDAYIEIIATRLVWDTFPRLPAGRLSQIRE 198 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 LV ET ++ L ++V ++R + T I+ D+ E+ +AA+ L Sbjct: 199 LLVKNETLAEYTSLYGLDQKLQVPPNIRDQI-KTWTKIKGDLFEAYVAAVILSNRDNGVQ 257 Query: 137 TFVDKYWKQRALKSGK--------FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 D + K + ++ +L K E + SG Sbjct: 258 LAEDWLTQLWIPKLEQIEKDKPVLRYKEDLAKLVMDKGIKLSYLDEKQSICHSG--GLQT 315 Query: 189 FTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVL 220 F V V + G SK A AA + L Sbjct: 316 FFVGVYLTGWGHKNECLGSGTGFSKVIAGNEAARKAL 352 >gi|189199432|ref|XP_001936053.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983152|gb|EDU48640.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1439 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNH 62 + +EK +GY F N++LL +ALTH + SYER EFLGD +L ++S LF H Sbjct: 1121 MSLGLVEKLLGYKFTNKALLLEALTHVTFRGLNTNCSYERHEFLGDAVLDYIVSRRLFAH 1180 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVAR 89 ++ ++V+A + Sbjct: 1181 KPELSHRKMHGIRTAMVNASFLAYSMF 1207 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81 +L ALT S + + Y+RLEFLGD IL + S L EG L+ + LVS Sbjct: 959 ILVTALT--SSALNEGNDYQRLEFLGDCILKFIASLHLMAANLQMPEGMLTGKKGKLVSN 1016 Query: 82 ETCSQVARELDLASFIRVSS 101 ++ L +I Sbjct: 1017 GYLARATLAAGLDQYIFHKR 1036 >gi|196000070|ref|XP_002109903.1| hypothetical protein TRIADDRAFT_20536 [Trichoplax adhaerens] gi|190588027|gb|EDV28069.1| hypothetical protein TRIADDRAFT_20536 [Trichoplax adhaerens] Length = 190 Score = 71.9 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + E+ IG F + LL KA TH S +H Y+RLEFLGD IL ++++ ++ F Sbjct: 120 LTDFEESIGVEFKHIRLLAKAFTHPSAGLNHLTIGDYQRLEFLGDAILSYMLASHVYRQF 179 Query: 64 DSAKEGELSVR 74 +EG LSVR Sbjct: 180 PHYREGHLSVR 190 >gi|262340868|ref|YP_003283723.1| ribonuclease III [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272205|gb|ACY40113.1| ribonuclease III [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 250 Score = 71.9 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 81/227 (35%), Gaps = 14/227 (6%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-------SYERLEFLGDRILGLL 54 ++ L K +G+ N L++ + S S + +++RLEFLGD +L + Sbjct: 15 DSILVRKLIKILGFCPKNTKFLKEVFIY-SFSTKRKNLNPNYSVNFQRLEFLGDAVLNSI 73 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 IS L KEGEL+ + +V ++++R+L +A S ++ Sbjct: 74 ISHFLCEKLPEKKEGELTQIRSKIVCRRNLNEISRKLTIADIFLEKSVTSDNILGNTLEA 133 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 + I + + K + EW+ + Sbjct: 134 LIGFIYLEIGYQGCKNFVHQKILHSHVNITK----LQNEIFSYKVWMIEWSQKNKFLINF 189 Query: 175 YKVTFRSGPDHD-PRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219 + D + + + I G +G SK+ +E++AA E Sbjct: 190 KTFREKEDKDKNLIIYLSELTILGFEIQTKGRGSSKKKSEEMAAKEA 236 >gi|126642554|ref|YP_001085538.1| ribonuclease III [Acinetobacter baumannii ATCC 17978] Length = 176 Score = 71.9 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 3/174 (1%) Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 ++I+ L++ + EG L+ +LV E ++A +L L+ + +S+ K Sbjct: 1 MIIANYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRE 60 Query: 113 SIQADVVESLIAALYLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 SI AD VE++I A+YLD ++ +D K+ LQE+ A+ Sbjct: 61 SILADTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARK 120 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P Y+V G F V + GL+ G S+R AEQ AAAE+LK Sbjct: 121 KPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILKLL 174 >gi|113474882|ref|YP_720943.1| RNAse III [Trichodesmium erythraeum IMS101] gi|110165930|gb|ABG50470.1| RNAse III [Trichodesmium erythraeum IMS101] Length = 250 Score = 71.5 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 89/211 (42%), Gaps = 10/211 (4%) Query: 5 RYSTLEKRIGYA----FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + +L +++ + +LL+ ALTHS++S ++ + E+LEF GD ++ L+ + LL Sbjct: 11 QLKSLVEKLSISQQALIK-WNLLDLALTHSTVSSTH--NNEKLEFFGDAVVRLVAAQLLL 67 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 ++ + GE + + LVS + +Q+A + + ++ VS D + Sbjct: 68 ENYPNCSVGEFTAIRSILVSDRSLAQIADKYGWSRYLLVSKSAAGDKVGRERRLADSFEA 127 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 L A +E+ ++D ++++ ++ K LQE + P Y+ Sbjct: 128 VLGALYLSTNNLELIRPWLDSHFERLIAEIRKDPACHSYKAALQELTQGYYKTLPNYQAH 187 Query: 179 FRSGPDHDP-RFTVVVEISGLAPAQGMDCSK 208 + D RF V G G S Sbjct: 188 EVNKIYGDRERFFAEVWFKGQKLGVGKGPSI 218 >gi|242039323|ref|XP_002467056.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor] gi|241920910|gb|EER94054.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor] Length = 1586 Score = 71.5 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 1/98 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64 + LE ++ Y F+ + LL +A++H S+ Y+RLEFLGD +L LLI+ L+ Sbjct: 1179 FEELEAKLKYNFSVKGLLLEAVSHPSLQELGVDYCYQRLEFLGDSVLDLLITQHLYATHT 1238 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 GEL+ ++LVS E +Q ++ S ++ S Sbjct: 1239 DVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSG 1276 Score = 43.0 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 65/213 (30%), Gaps = 23/213 (10%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 SL+ +A+T ++ S ERLE LGD +L +I LF + EG LS + V Sbjct: 983 SLILEAIT--TLRCCETFSLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVC 1040 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCS------FMTSIQADVVESLIAALYLDGGIEV 134 T + L +IR ++ + + + + + + Sbjct: 1041 NATLHKHGICRSLQGYIRDTAFDPRRWVAPGQISLRPFPCNCGIETAFVPFTGEYISDDP 1100 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + K D L + G+T V G D V Sbjct: 1101 SFIVGKPCDRGHRWMCSKTVSDCVEALVGAYYVGGGITAAIWVMRWFGID--------VR 1152 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEV-LKREGIW 226 + S A+ L + ++ Sbjct: 1153 CDMELVQKAKYNS------NASQLCYLSKLKVF 1179 >gi|164424566|ref|XP_963538.2| hypothetical protein NCU06766 [Neurospora crassa OR74A] gi|157070568|gb|EAA34302.2| predicted protein [Neurospora crassa OR74A] Length = 1421 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 77/229 (33%), Gaps = 19/229 (8%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLF 60 + + LEK + Y F +SLL +A+TH S + + + YERLEFLGD IL +++ L Sbjct: 1037 SKQLEPLEKAMDYTFNKKSLLIEAMTHPSCAGLGTNESCYERLEFLGDAILDVIVVKRLM 1096 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + L S T +A ++ + + Sbjct: 1097 AETGPNELAH-NDMHEHLSSVVTADIMAFLAMEWVIMQTDINEIDPTNLDALGLLPSSQS 1155 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA--KFGVTPEYKVT 178 + A + + ++ + + + L++ T + + Sbjct: 1156 RITPASLVSNKEDWPFWRFMRHNSPQVGATQTATIERYLTLRDEIRDAIWKHNTLPWALL 1215 Query: 179 FRSGPDHDPRF---TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 R GP +F V I + G A +VL + G Sbjct: 1216 ARMGP---QKFYSDIVESLIGAVWVDSGS--------WKACEDVLTQMG 1253 >gi|161783812|sp|Q7SCC1|DCL2_NEUCR RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl-2; Includes: RecName: Full=ATP-dependent helicase dcl-2 gi|18376024|emb|CAB91758.2| related to RNA helicase/RNAseIII CAF [Neurospora crassa] Length = 1540 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 77/229 (33%), Gaps = 19/229 (8%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLF 60 + + LEK + Y F +SLL +A+TH S + + + YERLEFLGD IL +++ L Sbjct: 1156 SKQLEPLEKAMDYTFNKKSLLIEAMTHPSCAGLGTNESCYERLEFLGDAILDVIVVKRLM 1215 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + L S T +A ++ + + Sbjct: 1216 AETGPNELAH-NDMHEHLSSVVTADIMAFLAMEWVIMQTDINEIDPTNLDALGLLPSSQS 1274 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA--KFGVTPEYKVT 178 + A + + ++ + + + L++ T + + Sbjct: 1275 RITPASLVSNKEDWPFWRFMRHNSPQVGATQTATIERYLTLRDEIRDAIWKHNTLPWALL 1334 Query: 179 FRSGPDHDPRF---TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 R GP +F V I + G A +VL + G Sbjct: 1335 ARMGP---QKFYSDIVESLIGAVWVDSGS--------WKACEDVLTQMG 1372 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 8/106 (7%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS------TLLFNHFDSAKEGELS 72 N L+ AL S +YERLEF+GD IL + + + E LS Sbjct: 978 NLPLITTALI--SSGSRGPTNYERLEFIGDTILKFCACLTASALSAHHSIVPNHHERLLS 1035 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 + LV+ + +R+ L +I S+ +K F+ ++ Sbjct: 1036 QWKDKLVNNVRLCRASRDFGLDEYIINSAASKKWRPKFVEDYMDEM 1081 >gi|70984786|ref|XP_747899.1| nucleolar RNAse III [Aspergillus fumigatus Af293] gi|66845527|gb|EAL85861.1| nucleolar RNAse III, putative [Aspergillus fumigatus Af293] Length = 373 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 79/230 (34%), Gaps = 17/230 (7%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++L L + + SL TH +S + +Y+RLE LGD + L+ + ++ Sbjct: 129 NSLSLPELPPIL-----DSSLELAVFTHPGLSKDSKLTYDRLEILGDAYIELIATRFIWG 183 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ G++S LV ET S+ A L + T + D+ ES Sbjct: 184 RYEGFSSGQISQIRELLVKNETLSEFATLYGLDN-RASVPRDLLSQPRRWTKTKGDIFES 242 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179 +AA+ L + + + R A + A G + K Sbjct: 243 YVAAVILSRPSDGYHVAERWLTQLWLPRLTDAVIPRTALDAKETLAKRIMGKGVKLKYVD 302 Query: 180 RSGPD----HDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220 P F V V ++G G SK A AA + L Sbjct: 303 ERSPAQSRGGMQTFYVGVYLTGWGWQNKHLGSGHGPSKAVAGDAAARQAL 352 >gi|325093360|gb|EGC46670.1| dicer-like protein [Ajellomyces capsulatus H88] Length = 1436 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 25/222 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY F + L +A TH S S SY+RLEF+GD IL +I LFN + Sbjct: 1097 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVYHLFNAPRT 1156 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 ++ + +L +A+ + + + R S + + Sbjct: 1157 LPHFDMHLMRTALANADFLAFLCIGMST---------ERVRGEIAECSKENTSTKLTTRK 1207 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 + L + ++ +Q+ + + +E E +H H Sbjct: 1208 VSLWQYMRHGTSWELTAAQQQTANQYQTLQADISEALEKSHTYPWTLLSRL--------H 1259 Query: 186 DPRFTVVVE--ISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +F + + G A L+R G+ Sbjct: 1260 AQKFFSDLIESVLGAIFIDSHGS------LEACTAFLERIGL 1295 Score = 41.5 bits (95), Expect = 0.099, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + SL+ A++ +S + +Y+R+EFLGD IL + L EG LS + Sbjct: 924 FTDLSLVITAIS-ASAARE-ATNYQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRAKD 981 Query: 77 SLVSAETCSQVARELDLASF 96 ++VS + S A E L F Sbjct: 982 TVVSNKRLSYAAIETGLDKF 1001 >gi|331236185|ref|XP_003330752.1| hypothetical protein PGTG_12289 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309309742|gb|EFP86333.1| hypothetical protein PGTG_12289 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1470 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 87/255 (34%), Gaps = 38/255 (14%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E++I Y F + L +ALTH S + YER E+LGD ++ + I + FD+A Sbjct: 1115 EQIERKINYVFKEKLFLVQALTHRSANSFLTNCYEREEWLGDAVIDMWIVEHAYKRFDNA 1174 Query: 67 KEGELSVRFNSLVSAET-CSQVARELDLASFIRVSSDLRKDVC----------------- 108 ELS+ + + ++L L FI SD C Sbjct: 1175 TADELSLARAKVACNGSLGFLAIKKLGLHEFIMHKSDNFHQACAEAIEAIEPFTKISEFF 1234 Query: 109 ---------SFMTSIQADVVESLIAALYLDGGIEVAGTFV-----DKYWKQRALKSGKFR 154 I D +E+++ A+++D G+ + + + + Sbjct: 1235 SNINNLFVVFDPPKILNDALEAIVGAVFVDSGLNLPTAYRVLDVIFEDVTPSLSRLAARD 1294 Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMD-CSK 208 + + + P+ + + V V + G G S Sbjct: 1295 PVSTLLRLRDRYQCTELLRTTTTINEPNPEGEEKTPVSVRVCRIEFHGQQIGIGRHQSST 1354 Query: 209 RAAEQVAAAEVLKRE 223 AEQ A+ E +K Sbjct: 1355 SVAEQRASLEAIKVL 1369 >gi|159126180|gb|EDP51296.1| nucleolar RNAse III, putative [Aspergillus fumigatus A1163] Length = 373 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 79/230 (34%), Gaps = 17/230 (7%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++L L + + SL TH +S + +Y+RLE LGD + L+ + ++ Sbjct: 129 NSLSLPELPPIL-----DSSLELAVFTHPGLSKDSKLTYDRLEILGDAYIELIATRFIWG 183 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ G++S LV ET S+ A L + T + D+ ES Sbjct: 184 RYEGFSSGQISQIRELLVKNETLSEFATLYGLDN-RASVPRDLLSQPRRWTKTKGDIFES 242 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179 +AA+ L + + + R A + A G + K Sbjct: 243 YVAAVILSRPSDGYHVAERWLTRLWLPRLTDAVIPRTALDAKETLAKRIMGKGVKLKYVD 302 Query: 180 RSGPD----HDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220 P F V V ++G G SK A AA + L Sbjct: 303 ERSPAQSRGGMQTFYVGVYLTGWGWQNKHLGSGHGPSKAVAGDAAARQAL 352 >gi|240276002|gb|EER39515.1| dicer-like protein [Ajellomyces capsulatus H143] Length = 800 Score = 70.7 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 25/222 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY F + L +A TH S S SY+RLEF+GD IL +I LFN Sbjct: 461 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVYHLFNAPRI 520 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 ++ + +L +A+ + + + R S + + Sbjct: 521 LPHFDMHLMRTALANADFLAFLCIGMST---------ERVRGEIAECSKENTSTKLTTRK 571 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 + L + ++ +Q+ + + +E E +H H Sbjct: 572 VSLWQYMRHGTSWELTAAQQQTANQYQTLQADISEALEKSHTYPWTLLSRL--------H 623 Query: 186 DPRFTVVVE--ISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +F + + G A L+R G+ Sbjct: 624 AQKFFSDLIESVLGAIFIDSHGS------LDACTAFLERIGL 659 Score = 41.5 bits (95), Expect = 0.099, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + SL+ A++ +S + +Y+R+EFLGD IL + L EG LS + Sbjct: 288 FTDLSLVITAIS-ASAARE-ATNYQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRAKD 345 Query: 77 SLVSAETCSQVARELDLASF 96 ++VS + S A E L F Sbjct: 346 TVVSNKRLSYAAIETGLDKF 365 >gi|302422698|ref|XP_003009179.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102] gi|261352325|gb|EEY14753.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102] Length = 1510 Score = 70.7 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 73/256 (28%), Gaps = 49/256 (19%) Query: 17 FANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 F + +LL A H S +Y+RLEFLGD +L ++ LF F A L+ Sbjct: 1230 FKSPALLRSAFKHPSYPRQFESVPNYQRLEFLGDALLDMVCVDFLFRKFPDADPQWLTEH 1289 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLR------------------------------ 104 ++VS ++ EL + S + Sbjct: 1290 KMAMVSNHFLGSLSVELGFYRRVLHFSGVMANQIKDYVDALTHARQEAEAAAQISGVISQ 1349 Query: 105 --KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK------QRALKSGKFRRD 156 +DVVE+ I A+++D G + AL Sbjct: 1350 DYWLNVQHPPKFLSDVVEAYIGAIFVDSGYNYSQVQAFFEKHIRPFFADMALYDSFASSQ 1409 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDH---------DPRFTVVVEISGLAPAQGMDCS 207 T L FG + P + + G S Sbjct: 1410 PVTTLARMMQQDFGCQDWRLLVSELPPSCEDGGATAITETEVICGFMVHGRILLHAKSSS 1469 Query: 208 KRAAEQVAAAEVLKRE 223 + A+ AA +++ Sbjct: 1470 GQYAKVGAAKRAVEKL 1485 Score = 43.4 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 20 RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L +A+T S +YERLEFLGD L + + LF + Sbjct: 1080 PDLALEAMTKDSSNSDEQDQEKIDFQAGMGNNYERLEFLGDCFLKMATTIALFTRIPDSN 1139 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 E E V L+ + VA + +L +IR Sbjct: 1140 EFEYHVERMLLICNQNLFNVALKKNLQEYIR 1170 >gi|119498655|ref|XP_001266085.1| RNase3 domain protein [Neosartorya fischeri NRRL 181] gi|119414249|gb|EAW24188.1| RNase3 domain protein [Neosartorya fischeri NRRL 181] Length = 373 Score = 70.7 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 50/213 (23%), Positives = 77/213 (36%), Gaps = 12/213 (5%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + SL TH +S + +Y+RLE LGD + L+ + +++ F+ G++S L Sbjct: 141 DSSLELAVFTHPGLSKDSKSTYDRLEILGDAYIELIATRFIWSRFEDISSGQISQIRELL 200 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 V ET S+ A L V DL T + D+ ES +AA+ L + Sbjct: 201 VKNETLSEFATLYGLDGRASVPQDLLNQ-PRRWTKTKGDIFESYVAAIILSRPTDGYHVA 259 Query: 139 VDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP----DHDPRFTVV 192 + + R A + A G + K P F V Sbjct: 260 ERWLTQLWLPRLTDTVIPRTALDAKETLAKRIMGKGVKLKYVDERSPVQSRGGMQTFYVG 319 Query: 193 VEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220 V ++G G SK A AA + L Sbjct: 320 VYLTGWGWQNKHLGSGHGPSKAVAGDAAARQAL 352 >gi|225563402|gb|EEH11681.1| dicer-like protein [Ajellomyces capsulatus G186AR] Length = 1436 Score = 70.7 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 70/222 (31%), Gaps = 25/222 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY F + L +A TH S S SY+RLEF+GD IL +I LFN + Sbjct: 1097 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVYHLFNAPRT 1156 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 ++ + +L +A+ + + + + + + Sbjct: 1157 FPHFDMHLMRTALANADFLAFLCIGMSTERVR--------GEIAECSKENTSTTLTTHKV 1208 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 + +Q A + + D L+ + + H Sbjct: 1209 SLWQYMRHGTSWELTAAQQQTANQYETLQADISEALEGSHTYPWTLLSRL---------H 1259 Query: 186 DPRFTVVVE--ISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +F + + G A L+R G+ Sbjct: 1260 AQKFFSDLIESVLGAIFIDSHGS------LDACTAFLERIGL 1295 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + SL+ A++ +S++ +Y+R+EFLGD IL + L EG LS + Sbjct: 924 FTDLSLVITAIS-ASVARE-ATNYQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRAKD 981 Query: 77 SLVSAETCSQVARELDLASF 96 ++VS + S A E L F Sbjct: 982 TVVSNKRLSYAAIETGLDKF 1001 >gi|158334880|ref|YP_001516052.1| ribonuclease III [Acaryochloris marina MBIC11017] gi|158305121|gb|ABW26738.1| ribonuclease III [Acaryochloris marina MBIC11017] Length = 247 Score = 70.7 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 82/214 (38%), Gaps = 13/214 (6%) Query: 5 RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +R+G LL+ ALTH S S + +YE+LEF+GD ++ LL + LL Sbjct: 11 QLEKLIQRLGLPGNAPIRWDLLDLALTHPSAS--GRANYEQLEFVGDSVVRLLAAVLLQA 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--LRKDVCSFMTSIQADVV 119 GE S + LVS + +A L F+ + + + + V Sbjct: 69 ENAQGSVGEWSAIRSVLVSDRHLATLAANYGLDRFLLLGPSTLKDRRGQDSRLADAFEAV 128 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + D + K ++ ++ K LQ+W A + PEY+V Sbjct: 129 LGALYLSTGDLSLIQPWLQDPLRNKAEQVRIDPAYQNYKAALQQWTQAVYQQLPEYRVQE 188 Query: 180 RSGPDHDP------RFTVVVEISGLAPAQGMDCS 207 S P DP RFT V + G S Sbjct: 189 TSPPSQDPSDVMADRFTAEVWLQEELLGVGKGHS 222 >gi|322700444|gb|EFY92199.1| Dicer-like protein 2 [Metarhizium acridum CQMa 102] Length = 1441 Score = 70.7 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64 LE +GY F +SLL +A+TH S + SYE LEF+GD IL +I ++ Sbjct: 1154 LKPLEHLVGYQFKKKSLLIEAMTHQSCMFDYNRRSYEHLEFIGDAILDFIIVRKMYTAGP 1213 Query: 65 SAKEGELSVRFNSLVSAET 83 ++ ++V+ + Sbjct: 1214 LLAPYQMHSLKTAMVNGDF 1232 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +TL +RI + L+ +A++ S + +YERLEFLGD IL + + Sbjct: 976 TTLLERINIT--DLGLVREAISSRSAAEPV--NYERLEFLGDSILKYCTAIQVSAIHPEW 1031 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASF 96 EG LS + LV S+ A ++ LA F Sbjct: 1032 PEGYLSFFKDRLVGNSRLSRAAIDVGLAKF 1061 >gi|298491860|ref|YP_003722037.1| ribonuclease III ['Nostoc azollae' 0708] gi|298233778|gb|ADI64914.1| ribonuclease III ['Nostoc azollae' 0708] Length = 237 Score = 70.7 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 102/212 (48%), Gaps = 10/212 (4%) Query: 5 RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +++G + + LL+ ALTH+++S +YE+LEF+GD ++ L+ + +L+ Sbjct: 11 QLENLVQKLGLSPDSPIKWPLLDLALTHATVSE--SANYEQLEFVGDAVVRLVAAVVLWE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H+ G+ + + LVS SQ+ARE L ++ V+ D + + Sbjct: 69 HYPYCSVGDFAAIRSVLVSDRILSQLAREYGLELYLLVAGSATADHVGQESRLADAFEAV 128 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L A +E+ ++D ++++ + ++ R + K LQEW A+F + PEY+V Sbjct: 129 LGALYLSTHNLELIRPWLDPHFQELTKEIRLDPARLNYKAALQEWTQAQFKILPEYRVME 188 Query: 180 RSGPD--HDPRFTVVVEISGLAPAQGMDCSKR 209 + P H+ F V + QG S + Sbjct: 189 VNQPHRTHER-FMAEVWLHKKMLGQGKGRSIK 219 >gi|300709179|ref|XP_002996756.1| hypothetical protein NCER_100079 [Nosema ceranae BRL01] gi|239606080|gb|EEQ83085.1| hypothetical protein NCER_100079 [Nosema ceranae BRL01] Length = 1131 Score = 70.7 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 4/136 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNH 62 +EK I Y F N+ +EKA+ H S + S +++LE +GD L L +S +F Sbjct: 977 NILKVEKIINYTFKNKGYIEKAMIHPSYKDNIFGSERFQKLELVGDCFLDLKVSDYIFFK 1036 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV--SSDLRKDVCSFMTSIQADVVE 120 + A L SLV+ T + + + L F S R + ++ D+ E Sbjct: 1037 YTDADPETLHTHRKSLVNNHTFAMILFKSGLYDFSFTGLSDQTRDFNNNKVSKCYGDIFE 1096 Query: 121 SLIAALYLDGGIEVAG 136 +L A+ LD + Sbjct: 1097 ALAGAVILDSEFDFEM 1112 >gi|154282055|ref|XP_001541840.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150412019|gb|EDN07407.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 1437 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 25/222 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY F + L +A TH S S SY+RLEF+GD IL +I LFN + Sbjct: 1097 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVHHLFNAPRA 1156 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 ++ + +L +A+ + + + R S + + Sbjct: 1157 LPHFDMHLMRTALANADFLAFLCIGMST---------ERVRGEIAECSKENTSTKLTTRK 1207 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 + L + ++ +Q+ + + +E E +H H Sbjct: 1208 VSLWQYMRHGTSWELTAAQQQTANQYQTLQADISEALEKSHTYPWTLLSRF--------H 1259 Query: 186 DPRFTVVVE--ISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +F + + G A L+R G+ Sbjct: 1260 PQKFFSDLIESVLGAIFIDSHGS------LDACTAFLERIGL 1295 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 AF + SL+ A++ +S++ +Y+R+EFLGD IL + L EG LS Sbjct: 922 IAFTDLSLVITAIS-ASVARE-ATNYQRIEFLGDSILKFQTTLQLTATNLIWHEGLLSRA 979 Query: 75 FNSLVSAETCSQVARELDLASF 96 +++VS + S A E L F Sbjct: 980 KDTVVSNKRLSYAAIEAGLDKF 1001 >gi|325123052|gb|ADY82575.1| ribonuclease III, ds RNA [Acinetobacter calcoaceticus PHEA-2] Length = 176 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 3/174 (1%) Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 ++I+ L++ + + EG L+ +LV E ++A +L L+ + +S+ K Sbjct: 1 MIIANYLYHAYPNENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRE 60 Query: 113 SIQADVVESLIAALYLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 SI AD VE++I A+YLD G ++ +D K+ LQE+ A+ Sbjct: 61 SILADTVEAIIGAIYLDSGDLNLLKDIVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARK 120 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P Y+V G F V + GL G S+R AEQ AAAE+LK Sbjct: 121 KPLPVYEVVDIQGDAPHQHFKVECVVDGLPKIYGEGSSRRFAEQAAAAEILKLL 174 >gi|52549755|gb|AAU83604.1| similar to ribonuclease III [uncultured archaeon GZfos32E4] Length = 264 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 88/245 (35%), Gaps = 25/245 (10%) Query: 2 SALRYS--TLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57 +++ LE IG+ F N +LLE+A+T S S+ + +Y+ LEFLGDR+L L+++ Sbjct: 10 ENIKFELMELEASIGHQFKNIALLEEAITTGSYSNEHPGSSNYQTLEFLGDRVLSLILAE 69 Query: 58 LLFNHFDSAKEG--ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 LF SA +++ L + ++ + L ++IR + + + Sbjct: 70 ELFKLSKSASLDEGKMTFLKAELENNLRLAEYGENIGLRNYIRANEKREDIRPKVIADVF 129 Query: 116 ADVVESLIA-ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 + ++ EV + +R K + ++ + Sbjct: 130 EAICGAIYLDTEESIRIKEVKKILLKFEILERIKKEMSSGKGFLPIRNQFENKFREKHRC 189 Query: 175 YKVTFRS-----GPDHDPRFTVV-VEISGLAPAQ-----G-------MDCSKRAAEQVAA 216 G +H R+ + I + + G SK A+ A Sbjct: 190 NPEIKFEQKSTLGEEHPTRWRIEKCSIKDIQTGEYVELRGVRSDTDKSFSSKSEAKTDAI 249 Query: 217 AEVLK 221 + K Sbjct: 250 KQAYK 254 >gi|310794641|gb|EFQ30102.1| RNase3 domain-containing protein [Glomerella graminicola M1.001] Length = 1447 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFD 64 LE IGY F ++LL +A+TH+S + ERLEF+GD +L ++ LF Sbjct: 1139 LEPLEHLIGYKFDRKTLLIQAMTHASFNLGNPFGCLERLEFMGDSVLDYVVVNRLFAVEP 1198 Query: 65 SAKEGELSVRFNSLVSAET 83 + + ++V+ + Sbjct: 1199 PLPHQTMHLLKTAMVNGDF 1217 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 ++ SL+ A++ S S +YER+EFLGD IL + + E LS + Sbjct: 969 ISDLSLILTAISTGSASEPT--NYERIEFLGDSILKFSATINVAALNPQWPERLLSFHKD 1026 Query: 77 SLVSAETCSQVARELDLASF 96 ++VS T + A + L + Sbjct: 1027 AIVSNSTLCKAAVKHGLDRY 1046 >gi|121717533|ref|XP_001276079.1| RNase3 domain protein [Aspergillus clavatus NRRL 1] gi|119404277|gb|EAW14653.1| RNase3 domain protein [Aspergillus clavatus NRRL 1] Length = 228 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 67/205 (32%), Gaps = 12/205 (5%) Query: 27 LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86 TH + +Y+RLE LGD + L+ + L++N F G +S LV ET S+ Sbjct: 6 FTHPGVGKDLNSTYDRLEILGDAYIELIATKLIWNEFKDLSSGRISQMRELLVKNETLSE 65 Query: 87 VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146 A S V D T + D+ ES +AA+ L ++ + Sbjct: 66 FAALYGFDSRAAVPHDYLNQ-PKRWTKTKGDIFESYVAAVILSRPLDGYSVAERWLTQLW 124 Query: 147 -ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD-----HDPRFTVVVEI----- 195 R + + +E K P F + + + Sbjct: 125 LPKLRCTALRQPRLDAKEALAKKIMAKGIKLRYIDEYPPSRPSGGVQTFHIALYLTGWGW 184 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVL 220 G SK A AA + L Sbjct: 185 HNRHLGSGQGPSKAIAGDAAARQAL 209 >gi|261190414|ref|XP_002621616.1| RNase3 domain-containing protein [Ajellomyces dermatitidis SLH14081] gi|239591039|gb|EEQ73620.1| RNase3 domain-containing protein [Ajellomyces dermatitidis SLH14081] gi|239614955|gb|EEQ91942.1| RNase3 domain-containing protein [Ajellomyces dermatitidis ER-3] gi|327356568|gb|EGE85425.1| hypothetical protein BDDG_08370 [Ajellomyces dermatitidis ATCC 18188] Length = 382 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 82/217 (37%), Gaps = 18/217 (8%) Query: 23 LEKA-LTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 L A LTH I + +++YER+E LGD + ++ + L+++ F G LS Sbjct: 139 LHTAMLTHEGIHNPNTASLSEKNYERMELLGDAYIEIMATRLVWDTFPRLPAGRLSQIRE 198 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 LV ET ++ L + V ++R T ++ D+ E+ +AA+ L Sbjct: 199 LLVKNETLAEYTTLYGLDQKLMVPPEIRNQ-AKTWTKVKGDLFEAYVAAVILSNRDNGVQ 257 Query: 137 TFVDKYWKQRALKSGKFRRDAK------TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 D + K + ++ + ++ + + P F Sbjct: 258 LVEDWLTQLWIPKLEQIEKEKPVLRYKEELAKLIMDKGIRLSYLDEKKAINHPGGLQTFF 317 Query: 191 VVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222 + V ++G GM SK A AA + L+ Sbjct: 318 IGVYLTGWGHKKECLGSGMGLSKVIAGNEAARKALEN 354 >gi|300868242|ref|ZP_07112873.1| hypothetical protein OSCI_3600020 [Oscillatoria sp. PCC 6506] gi|300333766|emb|CBN58057.1| hypothetical protein OSCI_3600020 [Oscillatoria sp. PCC 6506] Length = 328 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 22/62 (35%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P+Y G H P + V + +G SK+ AE+ AA + L R Sbjct: 262 WVQANSDNTPPKYVTIHAGGAPHKPEYLAKVYVGEKLYGEGKGSSKKEAEKNAAEDALAR 321 Query: 223 EG 224 Sbjct: 322 LK 323 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRIL 51 + + + K + F N LL ALTH S + +E ERLEFLGD + Sbjct: 167 REKLAEILKLL--PFQNACLLNTALTHRSYFYENPKYVREDNERLEFLGDAVF 217 >gi|221130589|ref|XP_002165718.1| PREDICTED: similar to dicer 1 [Hydra magnipapillata] Length = 1615 Score = 70.0 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 E I Y F N+S L +A TH S S+S Y++ EFLGD IL LI+ + ++ Sbjct: 784 LQKFEDHISYRFLNKSHLIQAFTHLSYLSNSVTGCYQQYEFLGDAILDFLITLHIQSNTQ 843 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + G+L+ +++V+ T +A + +I Sbjct: 844 NLSPGQLTYFRSAVVNNNTFGLLAIKHSFYKYIY 877 Score = 40.7 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 11/153 (7%) Query: 4 LRYSTLEKRIGY---AFANRSLLE--KALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 L L + Y + S+L+ +ALT S + ERLE LGD L +S Sbjct: 566 LDLENLLQLKNYVTENVKSPSVLKIFEALTTRQASMPF--DLERLEVLGDSFLKQAVSIF 623 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 +F S EG+L++R +S E +V + + + + + S + Sbjct: 624 VFFQNPSFHEGKLTIRRKKCISNENLCKVGKSVGI----QNIICNSQFGTKSSNSENRNP 679 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 + YL ++ + + + +++ Sbjct: 680 WTVWLPPGYLRAELDDMKQYTYQNVQPKSIADC 712 >gi|164508752|emb|CAM07151.1| double-stranded RNA activated protein kinase [Danio rerio] Length = 682 Score = 70.0 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 T L K T E++ GP H+ RFT+ ++G G +K+ A+Q AA Sbjct: 8 YTSLLNEYQQKTQCTVEFEEGPTDGPSHNKRFTMRAIVNGQKFPDGTGKTKKEAKQNAAK 67 Query: 218 EVLKREG 224 L+ Sbjct: 68 NALEGLK 74 Score = 58.4 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 22/47 (46%) Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 ++K+ R GP H+P F V + G + S + A+Q AA Sbjct: 228 YDFKLVDRIGPPHNPIFVYKVVMDGKEYPEAQGRSAKEAKQNAAQHA 274 Score = 42.6 bits (98), Expect = 0.037, Method: Composition-based stats. Identities = 7/73 (9%), Positives = 17/73 (23%), Gaps = 4/73 (5%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAA 211 H++ + + +G +K+ A Sbjct: 97 HPNYTCWLNEHSQKSRLMFKACESTKMDPGNLTRLCTYVCKYVCDDKEFPEGYGKNKKEA 156 Query: 212 EQVAAAEVLKREG 224 ++ AA V + Sbjct: 157 KEAAALRVYEELN 169 >gi|167555192|ref|NP_001107942.1| interferon-induced, double-stranded RNA-activated protein kinase [Danio rerio] gi|163879058|gb|ABY47905.1| IFN-stimulated dsRNA-activated eIF2-alpha kinase 2 [Danio rerio] gi|164508750|emb|CAM07150.1| double-stranded RNA activated protein kinase [Danio rerio] Length = 682 Score = 70.0 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 T L K T E++ GP H+ RFT+ ++G G +K+ A+Q AA Sbjct: 8 YTSLLNEYQQKTQCTVEFEEGPTDGPSHNKRFTMRAIVNGQKFPDGTGKTKKEAKQNAAK 67 Query: 218 EVLKREG 224 L+ Sbjct: 68 NALEGLK 74 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%) Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 ++K+ R GP H+P F V + G + + + A+Q AA Sbjct: 228 YDFKLVDRIGPPHNPIFVYKVVMDGKEYPEAQGRNAKEAKQNAAQHA 274 Score = 42.6 bits (98), Expect = 0.037, Method: Composition-based stats. Identities = 7/73 (9%), Positives = 17/73 (23%), Gaps = 4/73 (5%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAA 211 H++ + + +G +K+ A Sbjct: 97 HPNYTCWLNEHSQKSRLMFKACESTKMDPGNLTRLCTYVCKYVCDDKEFPEGYGKNKKEA 156 Query: 212 EQVAAAEVLKREG 224 ++ AA V + Sbjct: 157 KEAAALRVYEELN 169 >gi|196001803|ref|XP_002110769.1| hypothetical protein TRIADDRAFT_54015 [Trichoplax adhaerens] gi|190586720|gb|EDV26773.1| hypothetical protein TRIADDRAFT_54015 [Trichoplax adhaerens] Length = 366 Score = 70.0 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 72/243 (29%), Gaps = 29/243 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--------------------------S 39 S KRI + L ALTH S H + S Sbjct: 86 LSAFMKRIQQNVS-EDRLRMALTHHSFLHQNDDVNYMDDNDYNTGTGVADFKSVEDVYQS 144 Query: 40 YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 +RL LG + ++ ++ + + K + N ++ + +A L +A IR Sbjct: 145 NDRLTILGYNAMRHFVTEYVYVRYPNLKSSHIYDMINFFMNRDGMVNIAHYLGIADLIRS 204 Query: 100 SSD-LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158 ++ + +V ++ L F+ R Sbjct: 205 KILLYNPVKTRIISDVFCAIVGAIYMDLGPIEARSFVQDFILVQQYGREFSDIIKIEHPI 264 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L + E ++ SG H P + V ++G S +AA+ A Sbjct: 265 FMLTAILKMQRMQPLEARLLRESGRATHFPTYVVGAFSGSKLLSEGAGPSIKAAKSAACQ 324 Query: 218 EVL 220 E L Sbjct: 325 EAL 327 >gi|158706444|sp|Q1DW80|DCL2_COCIM RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease DCL2; Includes: RecName: Full=ATP-dependent helicase DCL2 Length = 1478 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 73/227 (32%), Gaps = 26/227 (11%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + S +E +GY F + LL A+TH S S SY+RLEF+GD IL +++ LF Sbjct: 1180 NNNMLSEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFE 1238 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ + +LV+A+ L + ++ + Sbjct: 1239 SPRCFHHFDMHLMRTALVNADF----LAFLCMNAYREEDRGEAVENSKRR---------- 1284 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + + F+ + + + +L E K + Y T Sbjct: 1285 --VTVAMTKRRAYLWGFMKHSASWDIVNAQQRAAKQYEKLHEEIDEKLRSSKTYPWTLLC 1342 Query: 182 GPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 D F V I G A L+R G+ Sbjct: 1343 RLDAAKFFSDIVE-SILGAIFIDSQGS------MPACRIFLERIGLI 1382 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 5/105 (4%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F+N SL+ A+ SS + +Y+RLEFLGD +L L S L EG L++R Sbjct: 1012 FSNLSLVLTAI--SSSAAREASNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKG 1069 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++VS + A + L FI + S D + + Sbjct: 1070 NIVSNGYLANAALQTGLDKFILTKP---FTGAKWRPSYNTDHINT 1111 >gi|119190771|ref|XP_001245992.1| hypothetical protein CIMG_05433 [Coccidioides immitis RS] Length = 1435 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 73/227 (32%), Gaps = 26/227 (11%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + S +E +GY F + LL A+TH S S SY+RLEF+GD IL +++ LF Sbjct: 1137 NNNMLSEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFE 1195 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ + +LV+A+ L + ++ + Sbjct: 1196 SPRCFHHFDMHLMRTALVNADF----LAFLCMNAYREEDRGEAVENSKRR---------- 1241 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + + F+ + + + +L E K + Y T Sbjct: 1242 --VTVAMTKRRAYLWGFMKHSASWDIVNAQQRAAKQYEKLHEEIDEKLRSSKTYPWTLLC 1299 Query: 182 GPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 D F V I G A L+R G+ Sbjct: 1300 RLDAAKFFSDIVE-SILGAIFIDSQGS------MPACRIFLERIGLI 1339 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 5/105 (4%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F+N SL+ A+ SS + +Y+RLEFLGD +L L S L EG L++R Sbjct: 969 FSNLSLVLTAI--SSSAAREASNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKG 1026 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++VS + A + L FI + S D + + Sbjct: 1027 NIVSNGYLANAALQTGLDKFILTKP---FTGAKWRPSYNTDHINT 1068 >gi|302808147|ref|XP_002985768.1| hypothetical protein SELMODRAFT_122841 [Selaginella moellendorffii] gi|300146677|gb|EFJ13346.1| hypothetical protein SELMODRAFT_122841 [Selaginella moellendorffii] Length = 219 Score = 69.6 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 4/97 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L++++GY F N+ +L AL S H ++ RLEFLGD +L L++ L F Sbjct: 73 DLKELQEKLGYQFRNKQVLRVAL---SF-HDDNFTFRRLEFLGDAVLDYLVTRHLVRSFP 128 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 G + + ++ E S ++ +++ Sbjct: 129 DQSAGRHNTIKQATINKEHYSCISIRHGFHVYLQKVH 165 >gi|218196456|gb|EEC78883.1| hypothetical protein OsI_19246 [Oryza sativa Indica Group] gi|222630918|gb|EEE63050.1| hypothetical protein OsJ_17858 [Oryza sativa Japonica Group] Length = 350 Score = 69.6 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 89/269 (33%), Gaps = 53/269 (19%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +E+ + Y F + LLE+ALTH S + SY+RLEF+GD LGL S L+ + Sbjct: 38 ARVERLLRYQFRDGRLLEEALTHQSFADDAV-SYQRLEFVGDSALGLAFSNFLYLTNPTL 96 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---------------------- 104 G LS + +S E ++VA DL +R + Sbjct: 97 GPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTV 156 Query: 105 KDVCS--FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 S + AD+VE++ AA+Y+D ++ + W + + Sbjct: 157 PYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKRLTWLHGLQEIRWTVNTNNIKDW 216 Query: 163 EWAHAKFGVTPEYKVTFRS-----------------GPDHDPR--FT---------VVVE 194 + H F V V Sbjct: 217 INNFIYGKRLVTRWLFEPIITAETIDEQPVTMLHELCQKHGKMAQFKTWQKGGMTVVNVF 276 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++G G K A+ AA + ++ Sbjct: 277 VAGELVGIGSSEQKVIAKLNAARDATRKL 305 >gi|115462923|ref|NP_001055061.1| Os05g0271300 [Oryza sativa Japonica Group] gi|50878449|gb|AAT85223.1| hypothetical protein [Oryza sativa Japonica Group] gi|55908895|gb|AAV67838.1| unknown protein [Oryza sativa Japonica Group] gi|113578612|dbj|BAF16975.1| Os05g0271300 [Oryza sativa Japonica Group] Length = 344 Score = 69.6 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 89/269 (33%), Gaps = 53/269 (19%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + +E+ + Y F + LLE+ALTH S + SY+RLEF+GD LGL S L+ + Sbjct: 32 ARVERLLRYQFRDGRLLEEALTHQSFADDAV-SYQRLEFVGDSALGLAFSNFLYLTNPTL 90 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---------------------- 104 G LS + +S E ++VA DL +R + Sbjct: 91 GPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTV 150 Query: 105 KDVCS--FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 S + AD+VE++ AA+Y+D ++ + W + + Sbjct: 151 PYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKRLTWLHGLQEIRWTVNTNNIKDW 210 Query: 163 EWAHAKFGVTPEYKVTFRS-----------------GPDHDPR--FT---------VVVE 194 + H F V V Sbjct: 211 INNFIYGKRLVTRWLFEPIITAETIDEQPVTMLHELCQKHGKMAQFKTWQKGGMTVVNVF 270 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++G G K A+ AA + ++ Sbjct: 271 VAGELVGIGSSEQKVIAKLNAARDATRKL 299 >gi|166368821|ref|YP_001661094.1| ribonuclease III [Microcystis aeruginosa NIES-843] gi|166091194|dbj|BAG05902.1| ribonuclease III [Microcystis aeruginosa NIES-843] Length = 234 Score = 69.6 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 93/207 (44%), Gaps = 8/207 (3%) Query: 5 RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + TL +++G + LL+ ALTH SIS ++YE+LEF+GD ++ L + +L Sbjct: 11 QLKTLVEKLGLSADVPVKWDLLDLALTHPSISRD--KNYEQLEFVGDSVVRLAAAEVLLE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + A GE + + +VS T ++ A ++ VSS D ++ + Sbjct: 69 TYPEALVGEFAALRSMMVSDRTLAEFADRYGFERYLLVSSSTSIDQAGRISRLADAFEAV 128 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L A + + +++D+ +++ ++ R++ K LQEW A + P+Y V Sbjct: 129 LGALYLSTQTMVLVRSWLDEPLREKAAEIRRDPARQNYKDALQEWTQATYKKLPQYLVKE 188 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDC 206 + D + F V ++ G Sbjct: 189 INSLDQER-FCAEVWLNDQKLGVGTGR 214 >gi|149921056|ref|ZP_01909515.1| ribonuclease III [Plesiocystis pacifica SIR-1] gi|149818060|gb|EDM77517.1| ribonuclease III [Plesiocystis pacifica SIR-1] Length = 244 Score = 69.6 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 16/222 (7%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57 A + L +G+AFA LL ALT S ++ ++ S LEF GD +L L+ + Sbjct: 5 EASQLDPLMATLGHAFAQPQLLRVALTVGSWANENRDAGWPSNACLEFFGDAVLDLVAAD 64 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ F EG L+ SLVS + ++ AR +DL +I + + AD Sbjct: 65 ALWRRFPRLGEGALTRLRASLVSERSLAKAARSIDLGRWIYLGRGDEQRGARERDGTLAD 124 Query: 118 VVESLIAALYLDGGIEVAGT-------FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 +E+++ A +LD F + ++ + + D K+ LQ+ A+ Sbjct: 125 ALEAVLGAAFLDAREAGGDPSVAAAQVFERLFGERVRSLAPEDGLDPKSRLQQLVQAERR 184 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEI--SGL---APAQGMDCS 207 +TP Y P DP + VE+ +G +G S Sbjct: 185 LTPVYVAIGEPPPADDPHWRARVELRPAGKPVEVLGEGEGRS 226 >gi|289614471|emb|CBI58755.1| unnamed protein product [Sordaria macrospora] Length = 1365 Score = 69.6 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 2/175 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH 62 + LEK +GYAF +SLL +A+TH S YERLEFLGD IL +++ L Sbjct: 997 QLEPLEKAMGYAFTKKSLLIEAMTHPSCPGLGDNDSCYERLEFLGDAILDVIVVKRLMAE 1056 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + + ++ + ++ + S+ + Sbjct: 1057 TGPNELAHNDMHEYLSSVVTADIMAFLAMEWVIARTDTVEIDPARLDAIDSLPFSKHTKI 1116 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 A + + A ++ + ++ L++ E Sbjct: 1117 TPANLVSNTEDWAFWRFMRHNSSHVASAQTVTQERYLTLRDDIRTAIWEKHELPW 1171 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 2/86 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ ALT SI +YERLEFLGD IL F + E LS +SL Sbjct: 823 NLLLVTTALT--SIGSRAPTNYERLEFLGDTILKFCACLTASALFPNHHERLLSQWKDSL 880 Query: 79 VSAETCSQVARELDLASFIRVSSDLR 104 V+ + + + L +I S + Sbjct: 881 VNNVRLCRASIDFGLDEYIIHSMASK 906 >gi|238567352|ref|XP_002386225.1| hypothetical protein MPER_15614 [Moniliophthora perniciosa FA553] gi|215437540|gb|EEB87155.1| hypothetical protein MPER_15614 [Moniliophthora perniciosa FA553] Length = 116 Score = 69.6 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAK 67 +E IG+ F + LL +ALTH+S SYER+EFLGD +L ++++ L+ Sbjct: 8 VETIIGHTFKRKLLLVEALTHASHQQDLGTVSYERMEFLGDAVLDMIVNDYLYRAPGKEY 67 Query: 68 EGELSVRFNSLVSAETCSQVAR 89 V Sbjct: 68 SPGHIYLRKVAVVNGHILAFIC 89 >gi|171689324|ref|XP_001909602.1| hypothetical protein [Podospora anserina S mat+] gi|170944624|emb|CAP70735.1| unnamed protein product [Podospora anserina S mat+] Length = 1406 Score = 69.2 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGL 53 LEK IGY F +SLL +A+TH S + + S +RLEFLGD IL Sbjct: 1076 NMHLLEKLIGYTFKKKSLLIEAMTHPSFNVQDTRASLDRLEFLGDAILDY 1125 >gi|321457594|gb|EFX68677.1| hypothetical protein DAPPUDRAFT_329838 [Daphnia pulex] Length = 291 Score = 69.2 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + E + Y ++ +L +A TH + ++Y+RLE +GD LG L + F + Sbjct: 84 LAKFENILHYTSNDKEVLLEAFTH--GNSMKSQNYQRLELIGDAALGFLSALNFFIKSLT 141 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 G+++ ++ V +T A + ++ Sbjct: 142 HTSGDITKLRSACVCNDTFGVWAAKYGFHEHVQNLPP 178 >gi|321468043|gb|EFX79030.1| hypothetical protein DAPPUDRAFT_319984 [Daphnia pulex] Length = 488 Score = 69.2 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + E + Y ++ +L +A TH + ++Y+RLE +GD LG L + F + Sbjct: 84 LAKFENILHYTSNDKEVLLEAFTH--GNSMKSQNYQRLELIGDAALGFLSALNFFKKSLT 141 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 G+++ ++ V +T A + ++ Sbjct: 142 HTSGDITKLRSACVCNDTFGVWAAKYGFHEHVQNLPP 178 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDR 49 E+ + Y+F + +L +ALT +S + +Y+RLE +GD Sbjct: 330 VKAFEEILNYSFNYKEVLLEALT---YGNSIRSLNYQRLEVIGDA 371 >gi|121807816|sp|Q2VF18|DCL2_CRYPA RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease DCL-2; Includes: RecName: Full=ATP-dependent helicase DCL-2 gi|77632776|gb|ABB00357.1| dicer-like protein 2 [Cryphonectria parasitica] Length = 1451 Score = 68.8 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 1/98 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63 LE+ I Y+F ++LL +A+TH S + Y+RLEF+GD IL +I +F Sbjct: 1152 DLQLLEQLIEYSFCEKALLVEAVTHPSYNVSGTVACYDRLEFIGDAILDYIIVEEVFALE 1211 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 + + ++ + +LV+A+ + E Sbjct: 1212 PALENWQMHLLRTALVNADILGFLIMEWSYKQMGFEVC 1249 Score = 43.0 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 +N S+L +A+ S E+YER+EFLGD IL I+ L EG LS+ Sbjct: 980 RISNVSMLVEAICAKSA--RTPENYERIEFLGDSILKTCITVNLAATKLHLPEGILSLMK 1037 Query: 76 NSLVSAETCSQVARELDLASF 96 + LVS + A + +L F Sbjct: 1038 DRLVSNARLCRAACDAELDQF 1058 >gi|321451362|gb|EFX63042.1| hypothetical protein DAPPUDRAFT_336024 [Daphnia pulex] Length = 270 Score = 68.8 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 4/99 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFD 64 E+ + Y+F ++ +L +ALT +S + +Y+RLE +GD G L + F Sbjct: 100 VKAFEEILNYSFNDKEVLLEALT---YGNSIRSLNYQRLEVIGDAAFGFLAALNFFKQSL 156 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 G++S ++ V +T +A + + ++I+ Sbjct: 157 YHSAGDISQLRSACVCNDTFGMLAAKRNFHAYIQNLPPN 195 >gi|242221926|ref|XP_002476701.1| predicted protein [Postia placenta Mad-698-R] gi|220724029|gb|EED78105.1| predicted protein [Postia placenta Mad-698-R] Length = 232 Score = 68.8 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLF 60 + S +E +GY F +++LL +ALTH+S SYERLEFLGD L ++++ L+ Sbjct: 176 QLSLVETMLGYEFTHKALLVQALTHASYHGDLTTMSYERLEFLGDSALDMVVTDWLY 232 Score = 38.8 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 2/97 (2%) Query: 26 ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85 ALT +Y+RLE LGD +L + S LF + EG L+ R + VS + Sbjct: 1 ALTAP--VAQELINYQRLETLGDTVLKYITSIKLFADYPLWHEGYLARRKDHAVSNVQLA 58 Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A L +I + + S D+ Sbjct: 59 KCAISKGLYQWIIRDRFVPRKWRPHYMSGPEDIGSRT 95 >gi|196229194|ref|ZP_03128059.1| dsRNA-specific ribonuclease [Chthoniobacter flavus Ellin428] gi|196226426|gb|EDY20931.1| dsRNA-specific ribonuclease [Chthoniobacter flavus Ellin428] Length = 69 Score = 68.8 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 3/62 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+RI Y F N LL +ALTH S+ H + +RLEFLGD +L L+ + LF+ F Sbjct: 2 NPLEQRIKYKFRNSLLLAEALTHPSLGHETQRHHFDNQRLEFLGDAVLQLIFTEYLFDQF 61 Query: 64 DS 65 Sbjct: 62 PR 63 >gi|322707759|gb|EFY99337.1| Dicer-like protein 2 [Metarhizium anisopliae ARSEF 23] Length = 1442 Score = 68.8 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFD 64 LE +GY F +SLL +A+TH S Y + SYE LEF+GD IL +I ++ Sbjct: 1155 LKPLEHLVGYQFNKKSLLIEAMTHQSCMFDYQRRSYEHLEFIGDAILDFIIVRKMYTAEP 1214 Query: 65 SAKEGELSVRFNSLVSAET 83 ++ ++V+A+ Sbjct: 1215 LLAPHQMHSLKTAMVNADF 1233 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 4/90 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +T+ +RI + L+ +A++ S + +YERLEFLGD IL + + Sbjct: 977 TTILERINIT--DLRLVREAISSRSAAEPV--NYERLEFLGDSILKYCTAIQVSAIHPEW 1032 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASF 96 EG LS + LVS S+ A ++ LA F Sbjct: 1033 PEGYLSFFKDRLVSNSRLSRAAIDVGLAKF 1062 >gi|307105017|gb|EFN53268.1| hypothetical protein CHLNCDRAFT_53967 [Chlorella variabilis] Length = 947 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 63/260 (24%), Positives = 90/260 (34%), Gaps = 43/260 (16%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFNH 62 +E G + L ALTH S +SYERLEFLGD +LGL TLL Sbjct: 684 RVEALTGCGVRDMGLYRTALTHKSALPLELRLEKLQSYERLEFLGDSVLGLCCRTLLMAR 743 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------LRKDV 107 + EG++S R + LVS + ++ A L L ++ + Sbjct: 744 CPDSDEGQMSRRNSLLVSGASNARYAAFLGLDRYVLLEPRALRHAPLEASSEQPWHSSAA 803 Query: 108 CSFMTSIQADVVES------------------LIAALYLDGGIEVAGTFVDKYWKQRALK 149 S S + + L A G + + + Sbjct: 804 GSTRRSRRRCHFSAGEGAQHKPGLLADAFEALLGALYLDRGFVVARRFCMRVLEACVEWE 863 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGM 204 + +D K L +A A P + V S ++ P +TV V G G Sbjct: 864 QLEAAQDFKALLCRYAGAHQKPQPRFSVRSTSQREYKAGLQLPWWTVEVAFGGRVVGSGG 923 Query: 205 DCSKRAAEQVAAAEVLKREG 224 KR AEQ AA E L+ G Sbjct: 924 SFDKRGAEQAAAREALEGLG 943 >gi|320035561|gb|EFW17502.1| RNA helicase/RNAse III [Coccidioides posadasii str. Silveira] Length = 1448 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + S +E +GY F + LL A+TH S S SY+RLEF+GD IL +++ LF Sbjct: 1137 NNNMLSEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFE 1195 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARE 90 ++ + +LV+A+ + + Sbjct: 1196 SPRGFHHFDMHLMRTALVNADFLAFLCMN 1224 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 5/105 (4%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F+N SL+ A+ SS + +Y+RLEFLGD +L L S L EG L++R Sbjct: 969 FSNLSLVLTAI--SSSAAREASNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKG 1026 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++VS + A + L FI + S D + + Sbjct: 1027 NVVSNGYLANAALQTGLDKFILTKP---FTGAKWRPSYNTDHINT 1068 >gi|303315249|ref|XP_003067632.1| Type III restriction enzyme, res subunit family protein [Coccidioides posadasii C735 delta SOWgp] gi|240107302|gb|EER25487.1| Type III restriction enzyme, res subunit family protein [Coccidioides posadasii C735 delta SOWgp] Length = 1448 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + S +E +GY F + LL A+TH S S SY+RLEF+GD IL +++ LF Sbjct: 1137 NNNMLSEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFE 1195 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARE 90 ++ + +LV+A+ + + Sbjct: 1196 SPRGFHHFDMHLMRTALVNADFLAFLCMN 1224 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 5/105 (4%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F+N SL+ A+ SS + +Y+RLEFLGD +L L S L EG L++R Sbjct: 969 FSNLSLVLTAI--SSSAAREASNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKG 1026 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++VS + A + L FI + S D + + Sbjct: 1027 NVVSNGYLANAALQTGLDKFILTKP---FTGAKWRPSYNTDHINT 1068 >gi|118370147|ref|XP_001018276.1| Dicer-related RNase III protein Dcr1p, putative [Tetrahymena thermophila] gi|89300043|gb|EAR98031.1| Dicer-related RNase III protein Dcr1p, putative [Tetrahymena thermophila SB210] Length = 1903 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 91/242 (37%), Gaps = 30/242 (12%) Query: 4 LRYSTLEKRIGYAFANRSLLEKAL-THSSISHSYQ-ESYERLEFLGDRILGLLISTLLFN 61 + S EK + Y F ++SLL KAL HS+ + + + Y+ LEFLGD ++ +L+ + ++ Sbjct: 1637 IAISGFEKILNYTFKDKSLLIKALNCHSNSNFEHYFQDYQILEFLGDALIEILVVSHGYH 1696 Query: 62 -----HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD---------- 106 + L+S + S++A + S ++D Sbjct: 1697 ISRNRQKKINSPYFFCEMKSLLLSNDFMSRMAILNKFHYYALNISKYQQDEIIQFIEDCN 1756 Query: 107 ----------VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 + + D+ ES+ A+ +D I + K + + F + Sbjct: 1757 LNTKFKESVSHQANSPKVLGDLWESVAGAIIMDSDISTFVSIYGKLYAPYIIHFVTFYQK 1816 Query: 157 AKTELQEWAHAKFGVTPEY-KVTFRSGPDHDPRFTVVVE--ISGLAPAQGMDCSKRAAEQ 213 ++E T E D D ++ V V I + G+D S+ AE+ Sbjct: 1817 IIFNVKEKVQLVAQQTYEQLGKITEVVKDTDGQYKVKVTILIKQIKVGTGIDYSETLAEK 1876 Query: 214 VA 215 A Sbjct: 1877 KA 1878 Score = 36.4 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 2/88 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + LL ++ + S S + ++ E LE +GD ++ + S L+ H + E L++ Sbjct: 1360 DLELLIESFSQISYSKT--KNLELLEVIGDVVIKYISSLYLYLHLPNQSENALTMIRTIF 1417 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKD 106 ++ + A L +++ D Sbjct: 1418 INNKYLGISAFRNGLQFYVQTKRPSSYD 1445 >gi|221361577|emb|CAX18337.1| dicel-like 2 [Nicotiana benthamiana] Length = 224 Score = 68.0 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%) Query: 1 MSALRYST---LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGL 53 M+A + LE + Y F + SLL +ALTH S Y+RLEFLGD +L Sbjct: 168 MNAEKLVNVRYLESLLHYKFHDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDVVLDY 224 >gi|115478498|ref|NP_001062844.1| Os09g0315100 [Oryza sativa Japonica Group] gi|113631077|dbj|BAF24758.1| Os09g0315100 [Oryza sativa Japonica Group] Length = 245 Score = 68.0 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Query: 1 MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLIS 56 M A + +LE +GY F + LL +ALTH S Y+RLEFLGD IL L + Sbjct: 181 MKAEEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFT 240 Query: 57 TLLF 60 + Sbjct: 241 EYYY 244 >gi|119510841|ref|ZP_01629966.1| Ribonuclease III [Nodularia spumigena CCY9414] gi|119464520|gb|EAW45432.1| Ribonuclease III [Nodularia spumigena CCY9414] Length = 239 Score = 68.0 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 8/211 (3%) Query: 5 RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + +L +R+G LL+ ALTH ++S +YE+LEF+GD ++ L + +L+ Sbjct: 11 QLESLVRRLGLPPGLPIKWDLLDLALTHPTVSE--SANYEQLEFVGDAVVRLAAAVVLWE 68 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + G+ + + LVS +Q+ARE L ++ V+ D + + Sbjct: 69 TYPDCPVGDFAAIRSVLVSDRILAQLAREYSLQLYLLVAGSATSDKIGLESRLADAFEAV 128 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 L A +E+ ++D + K+ ++ R + K LQEW A+F V PEY+VT Sbjct: 129 LGALYLSTNNLELIRPWLDFHLKKLATEIRLDPARLNYKAALQEWTQAEFKVLPEYRVTE 188 Query: 180 RSGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209 + + + RF V + +G S + Sbjct: 189 VNQSNQNQERFAAEVWLHDNKLGEGKGRSIK 219 >gi|218439615|ref|YP_002377944.1| ribonuclease III [Cyanothece sp. PCC 7424] gi|218172343|gb|ACK71076.1| Ribonuclease III [Cyanothece sp. PCC 7424] Length = 235 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 5/192 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + SLL+ AL H S S +Y++LEF+GD ++ L + +L + A GE + + + Sbjct: 28 DWSLLDLALIHPSFSKEV--NYQQLEFVGDAVVRLAAAEVLLETYPEAPVGEFAALRSIM 85 Query: 79 VSAETCSQVARELDLASFIRV--SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 VS T ++ A L ++ + + + V + + Sbjct: 86 VSDRTLAEFADVFGLERYLLTAAYVSGDEAGRISRLADAFEAVLGALYLSTHTMQLVRPW 145 Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH-DPRFTVVVEI 195 K + R + K LQEW A + + P+Y+V ++ + RF V + Sbjct: 146 LDELLEKKAAEILQDPARLNYKDALQEWTQAHYKLLPQYRVQENPLKNNLEERFLAEVWL 205 Query: 196 SGLAPAQGMDCS 207 + G + Sbjct: 206 NDQKLGMGKGRT 217 >gi|310794561|gb|EFQ30022.1| RNase3 domain-containing protein [Glomerella graminicola M1.001] Length = 334 Score = 67.6 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 45/251 (17%), Positives = 79/251 (31%), Gaps = 43/251 (17%) Query: 16 AFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 +N L A TH ++ + + SY+RLE+LGD L L+ S+L+F F G+ S Sbjct: 61 KISNPVLEMAAFTHVGMAKTKTDLSYDRLEWLGDAYLELISSSLIFQTFGGLPTGKCSQL 120 Query: 75 FNSLVSAETCSQVARELD-------LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 L+ + + + + + + + D+ E+ +AA+ Sbjct: 121 RELLIRNSNLGEYSAHYKLFERAKLPSEYRPNGTLPAMAKPHEIQKVHGDLFEAYVAAIA 180 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE-----------LQEWAHAKFGVTPEYK 176 L + + A R + + Sbjct: 181 LSDPVSGLSRAAEWLKTLWARTIRDQIRTNARDPGMGMVKELGGTTTVETQVPPKVRLSQ 240 Query: 177 VTFRSG--------PDHDPR---------FTVVVEISG-----LAPAQGMDCSKRAAEQV 214 + G P + + FTV V + G G D +K+ A Q Sbjct: 241 IISAKGINIRYEDMPSANKKDKYNKKLALFTVGVYLDGWGEKNKLLGTGSDLNKKEAGQK 300 Query: 215 AAAEVL--KRE 223 AA L K+ Sbjct: 301 AAQMALNNKKL 311 >gi|168046558|ref|XP_001775740.1| predicted protein [Physcomitrella patens subsp. patens] gi|162672892|gb|EDQ59423.1| predicted protein [Physcomitrella patens subsp. patens] Length = 792 Score = 67.6 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 9/106 (8%) Query: 5 RYSTLEKRIGYAFANRSLLEKAL--------THSSISHSYQESYERLEFLGDRILGLLIS 56 TLEK+IGY F +SLL A T S ++RLEFLGD +L LI Sbjct: 539 DIVTLEKKIGYQFKCKSLLLSAFDYGDEVTFT-QSGVPRGSFQFQRLEFLGDSVLDFLIM 597 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 + + +L+ + V++E + A +++ S Sbjct: 598 RHFVQLYSAFNPEQLNDLRQATVNSENFACTAIRHGFHHYLKRMSP 643 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 ++ALT S + SYE LE LGD +L + ++ F S L + LVS Sbjct: 374 QEALT--SGACEGNHSYETLELLGDSVLNFIGGVHMYIDFPSCTSELLHSYRHDLVSNRN 431 Query: 84 CSQVARELDLASFIR 98 + L +I Sbjct: 432 LYKCGLACGLPGYIF 446 >gi|295673975|ref|XP_002797533.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] gi|226280183|gb|EEH35749.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] Length = 1450 Score = 67.6 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY F + L +A TH S + SY+RLEFLGD IL +I LFN + Sbjct: 1136 FRDIESLVGYTFNKKVFLAQAFTHPS-NPGSTMSYQRLEFLGDSILDHIIVDHLFNSPRN 1194 Query: 66 AKEGELSVRFNSLVSAETCSQVAREL 91 ++ + SL +A+ + + + Sbjct: 1195 FPHVDMHLMRASLANADFLAFLCIGM 1220 Score = 42.6 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + +L+ AL +Y+R+EFLGD IL S L EG LS + Sbjct: 965 FTDLNLVITALCAP--DAREATNYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNAKD 1022 Query: 77 SLVSAETCSQVARELDLASFIR 98 +VS + S A E L FI Sbjct: 1023 EVVSNKRLSYAAIETGLDKFIF 1044 >gi|242807890|ref|XP_002485049.1| nucleolar RNAse III, putative [Talaromyces stipitatus ATCC 10500] gi|218715674|gb|EED15096.1| nucleolar RNAse III, putative [Talaromyces stipitatus ATCC 10500] Length = 371 Score = 67.6 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 74/224 (33%), Gaps = 17/224 (7%) Query: 16 AFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 + N SL TH + +++Y+RLE LGD + ++ + L++ F G Sbjct: 117 SIHNASLERAVFTHPGAPVNVAAEGMEQNYDRLEVLGDAYVEVIATRLIWEQFKDMPAGR 176 Query: 71 LSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +S LV ET + A + + + ++ I+ DV E+ +AA+ L Sbjct: 177 MSQVREDLVKNETLAGFATQYGFDKRVSVSALEDQRAQTKRWLKIRGDVFEAYVAAVILS 236 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRR------DAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + + + + + + + + Sbjct: 237 NPLHGFDIVEKWLRELWLPRLLHVPPAQTALKHKEQLAKRIMGKGIKLRYVEEQPAKQLE 296 Query: 184 DHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222 F + V ++G G +K A AA + L+ Sbjct: 297 GGMQTFYIGVYLTGWGWQDQHLGSGSGLNKAIAGDEAAHKALEN 340 >gi|50897087|dbj|BAD34724.1| Dicer-related RNase III protein Dcl1p [Tetrahymena thermophila] Length = 1275 Score = 67.6 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 91/242 (37%), Gaps = 30/242 (12%) Query: 4 LRYSTLEKRIGYAFANRSLLEKAL-THSSISHSYQ-ESYERLEFLGDRILGLLISTLLFN 61 + S EK + Y F ++SLL KAL HS+ + + + Y+ LEFLGD ++ +L+ + ++ Sbjct: 1009 IAISGFEKILNYTFKDKSLLIKALNCHSNSNFEHYFQDYQILEFLGDALIEILVVSHGYH 1068 Query: 62 -----HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD---------- 106 + L+S + S++A + S ++D Sbjct: 1069 ISRNRQKKINSPYFFCEMKSLLLSNDFMSRMAILNKFHYYALNISKYQQDEIIQFIEDCN 1128 Query: 107 ----------VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 + + D+ ES+ A+ +D I + K + + F + Sbjct: 1129 LNTKFKESVSHQANSPKVLGDLWESVAGAIIMDSDISTFVSIYGKLYAPYIIHFVTFYQK 1188 Query: 157 AKTELQEWAHAKFGVTPEY-KVTFRSGPDHDPRFTVVVE--ISGLAPAQGMDCSKRAAEQ 213 ++E T E D D ++ V V I + G+D S+ AE+ Sbjct: 1189 IIFNVKEKVQLVAQQTYEQLGKITEVVKDTDGQYKVKVTILIKQIKVGTGIDYSETLAEK 1248 Query: 214 VA 215 A Sbjct: 1249 KA 1250 Score = 36.1 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 2/88 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + LL ++ + S S + ++ E LE +GD ++ + S L+ H + E L++ Sbjct: 732 DLELLIESFSQISYSKT--KNLELLEVIGDVVIKYISSLYLYLHLPNQSENALTMIRTIF 789 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKD 106 ++ + A L +++ D Sbjct: 790 INNKYLGISAFRNGLQFYVQTKRPSSYD 817 >gi|325185579|emb|CCA20062.1| Dicerlike 1 (DCL1) putative [Albugo laibachii Nc14] Length = 1609 Score = 67.6 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 13/93 (13%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISH-----------SYQESYERLEFLGDRI 50 +R LE+R+ Y F N+ LL +A+TH S+ S+Q +YERLE+LGD + Sbjct: 1378 KKMRL--LEQRLCYRFRNKLLLLEAITHPSVRRLEIVMDNEKRVSWQGNYERLEYLGDAL 1435 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 + L + F D+ G LS + VS + Sbjct: 1436 IEYLTVSYAFLAHDTWLPGSLSNWKAATVSNDA 1468 Score = 39.1 bits (89), Expect = 0.42, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 26/200 (13%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + STL + IG + +LL A + + +YER E LGD L L S ++ Sbjct: 1185 KAQVSTLMRHIGLEL-DMNLLGNA--------TSKPAYERCEVLGDTFLKLETSWYMYQM 1235 Query: 63 FDSAK-EGELSVRFNSLVSAETCSQVARELDLASFIRV---------------SSDLRKD 106 EG LS+ ++ + Q + +L +I Sbjct: 1236 RRDIPDEGTLSMLRRDIIRNDRLCQFSLLKELHHYIVYPAELEQHPFSCWKPSCMGKTPQ 1295 Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 + + ADV+E++ A + G + A F++ S +F + Sbjct: 1296 SINAPSKWIADVLEAICGAYIIGHGEKGARYFLNWVGIHVLDDSFEFSKR-FYPDCYPKT 1354 Query: 167 AKFGVTPEYKVTFRSGPDHD 186 S H+ Sbjct: 1355 LFPEAFKHVGKWKFSILHHE 1374 >gi|158705874|sp|A4RHU9|DCL2_MAGO7 RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease DCL2; Includes: RecName: Full=ATP-dependent helicase DCL2 Length = 1485 Score = 67.3 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+ +GY+F +SLL +A+TH+S + S S ERLEFLGD +L ++ LF+ D A Sbjct: 1171 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPA 1230 Query: 67 KEGELSVR 74 ++ Sbjct: 1231 PIEHYNMH 1238 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + L+ +T S S +YER+EFLGD +L L + + EG LS+ + Sbjct: 1002 FKDIDLVMMVIT--SSSAGRLTNYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKD 1059 Query: 77 SLVSAETCSQVARELDLASFIRVSS 101 LVS + A L L FI Sbjct: 1060 RLVSNSRLCKAATALGLDQFIITRQ 1084 >gi|145612491|ref|XP_001412113.1| hypothetical protein MGG_07167 [Magnaporthe oryzae 70-15] gi|145019646|gb|EDK03874.1| hypothetical protein MGG_07167 [Magnaporthe oryzae 70-15] Length = 819 Score = 67.3 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+ +GY+F +SLL +A+TH+S + S S ERLEFLGD +L ++ LF+ D A Sbjct: 505 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPA 564 Query: 67 KEGELSVR 74 ++ Sbjct: 565 PIEHYNMH 572 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + L+ +T S S +YER+EFLGD +L L + + EG LS+ + Sbjct: 336 FKDIDLVMMVIT--SSSAGRLTNYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKD 393 Query: 77 SLVSAETCSQVARELDLASFIRVSS 101 LVS + A L L FI Sbjct: 394 RLVSNSRLCKAATALGLDQFIITRQ 418 >gi|145612483|ref|XP_367242.2| hypothetical protein MGG_12357 [Magnaporthe oryzae 70-15] gi|145019642|gb|EDK03870.1| hypothetical protein MGG_12357 [Magnaporthe oryzae 70-15] Length = 1386 Score = 67.3 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE+ +GY+F +SLL +A+TH+S + S S ERLEFLGD +L ++ LF+ D A Sbjct: 1072 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPA 1131 Query: 67 KEGELSVR 74 ++ Sbjct: 1132 PIEHYNMH 1139 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + L+ +T S S +YER+EFLGD +L L + + EG LS+ + Sbjct: 903 FKDIDLVMMVIT--SSSAGRLTNYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKD 960 Query: 77 SLVSAETCSQVARELDLASFIRVSS 101 LVS + A L L FI Sbjct: 961 RLVSNSRLCKAATALGLDQFIITRQ 985 >gi|50294317|ref|XP_449570.1| hypothetical protein [Candida glabrata CBS 138] gi|49528884|emb|CAG62546.1| unnamed protein product [Candida glabrata] Length = 449 Score = 67.3 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 + + + H S+ + + + ERLEFLGD IL +++ +++N F S Sbjct: 181 EIKDHVIRARVFMHKSLVNDKVYLNESDIIKSNNERLEFLGDSILNTVMTMIIYNKFPSL 240 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EG L+ LV ET + + +L ++ + D+ + AD+ E+ I L Sbjct: 241 NEGNLTELRKKLVKNETLREWSELYELPKQLKSNLSPDVDL--STSKTSADIFEAYIGGL 298 Query: 127 YLDGGIEVAGTFVDK-----------YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 D K D + + ++ + + Sbjct: 299 MEDDPKTNLVKIRKWLKKLAKPKIEEAMKTSIQLEPTNNLDMNAKRKLYSLIGYAALKLH 358 Query: 176 KVTFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 T + + +P V G G + + A AA +VL++E + Sbjct: 359 YHTVQRPTNENPVTIVQCRTGDGTILGVGKARNIKLAGVKAAEDVLRKEDVI 410 >gi|56752450|ref|YP_173151.1| ribonuclease III [Synechococcus elongatus PCC 6301] gi|81300454|ref|YP_400662.1| RNAse III [Synechococcus elongatus PCC 7942] gi|56687409|dbj|BAD80631.1| ribonuclease III [Synechococcus elongatus PCC 6301] gi|81169335|gb|ABB57675.1| RNAse III [Synechococcus elongatus PCC 7942] Length = 247 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 11/212 (5%) Query: 5 RYSTLEKRIGYAFANRSL----LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + L ++ A L +++ALTH S + + Y+RLEFLGD +L L I+ L Sbjct: 19 QLQRLLTKLPLTIA-PELDWQQIDRALTHPSAAE---DHYDRLEFLGDAVLRLAIADFLD 74 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR--VSSDLRKDVCSFMTSIQADV 118 H+ G+ S + L S T + +A +L +R ++ + + + Sbjct: 75 RHYPDLSVGDCSALRSELGSDRTLAAIAASYNLERVLRVGKTAANDRAGQQSRLAEAFEA 134 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + + + + + A+ R + K LQEW ++ PEY+ Sbjct: 135 LLGALYLSQRNLDPIRSWLDPHLQQRATAMLQDPTRGNYKAALQEWTLQRYQELPEYRTE 194 Query: 179 FRSGPDHDPR-FTVVVEISGLAPAQGMDCSKR 209 RS DP F V G G+ S + Sbjct: 195 QRSDACGDPAAFAAEVWFRGEKLGSGVGRSIK 226 >gi|159481710|ref|XP_001698921.1| dicer-like protein [Chlamydomonas reinhardtii] gi|158273413|gb|EDO99203.1| dicer-like protein [Chlamydomonas reinhardtii] Length = 5684 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 4/97 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE +GY F N L +ALTH S + Y+RLEFLGD +LGL++S + Sbjct: 3492 ELEALLGYRFRNPDLCVQALTHVSHPRAAGCGGGYQRLEFLGDAVLGLVVS--FWVFSAG 3549 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 +S R LVS ++ A L L +R S Sbjct: 3550 GSAEAMSTRRRDLVSNGPLAEAAARLGLQRHLRAGSG 3586 >gi|113953295|ref|YP_729437.1| ribonuclease III [Synechococcus sp. CC9311] gi|113880646|gb|ABI45604.1| ribonuclease III [Synechococcus sp. CC9311] Length = 254 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 7/194 (3%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 L +ALTH+S +E+LEFLGD +L L S + + GE S LVS Sbjct: 35 EHLNEALTHTS--TGLARHHEQLEFLGDAVLRLAASDFIESEHPQMPVGERSALRAQLVS 92 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140 +++ + + ++V S D + T + A + G + ++ Sbjct: 93 DRWLAELGTTIGIEVLLQVGSKASGDQAARSTLRAEHCEALIGAIYRISGKVSPVQCWLT 152 Query: 141 KYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISG 197 YW++ + R ++K+ LQEW A+ P Y+ + DP RF V I Sbjct: 153 PYWRETSRDVLADPHRGNSKSALQEWTQAQGLGLPIYECHEVNKRHGDPRRFHCQVFIQD 212 Query: 198 LA--PAQGMDCSKR 209 A+ S+R Sbjct: 213 QNSPTAEAWGGSRR 226 >gi|296417647|ref|XP_002838464.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634403|emb|CAZ82655.1| unnamed protein product [Tuber melanosporum] Length = 398 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 68/252 (26%), Gaps = 33/252 (13%) Query: 3 ALRYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + + + L R+ L +AL H S + + L LG ++ + L Sbjct: 110 SAKLAALHARLSLHPKFPVQTLARALIHPSADPNPLFNNRSLTTLGSALINYYATEWLLC 169 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDL---------------------------- 93 + L ++ V A+ + + RE + Sbjct: 170 TYPRLPAEVLRAALSAYVGAKALASMGREWGVESAFEPRADVDAGLLQFKRLPPGPEVEA 229 Query: 94 -ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R A V S A +YL G+ F ++ R L K Sbjct: 230 SGYKWWQEKGERWTNGVPEEEATASFVTSTFAGVYLHEGVGPVKQFFRQHVLSRKLDIDK 289 Query: 153 --FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKR 209 EL + P + +G P F V V +G S Sbjct: 290 LFNFVQPTRELSSLCSREGFEPPIARHISETGRRSIAPVFVVGVYSGLEKIGEGHGGSMN 349 Query: 210 AAEQVAAAEVLK 221 A AA LK Sbjct: 350 EARIRAAVNALK 361 >gi|289804515|ref|ZP_06535144.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 187 Score = 66.5 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 3/171 (1%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 +EFLGD IL +I+ L++ F EG++S +LV T +++ARE DL +R+ Sbjct: 1 MEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPG 60 Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTE 160 K SI AD VE+LI ++LD I+ + + G ++D KT Sbjct: 61 ELKSGGFRRESILADTVEALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTR 120 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 LQE+ + P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 LQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 171 >gi|213158242|ref|YP_002320293.1| ribonuclease III [Acinetobacter baumannii AB0057] gi|215482645|ref|YP_002324839.1| Ribonuclease 3 [Acinetobacter baumannii AB307-0294] gi|213057402|gb|ACJ42304.1| ribonuclease III [Acinetobacter baumannii AB0057] gi|213986369|gb|ACJ56668.1| Ribonuclease 3 [Acinetobacter baumannii AB307-0294] gi|322509030|gb|ADX04484.1| rnc [Acinetobacter baumannii 1656-2] gi|323519012|gb|ADX93393.1| ribonuclease III [Acinetobacter baumannii TCDC-AB0715] Length = 155 Score = 66.5 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 3/153 (1%) Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 +LV E ++A +L L+ + +S+ K SI AD VE++I A+YLD Sbjct: 1 MRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSSDL 60 Query: 134 V---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 ++ +D K+ LQE+ A+ P Y+V G F Sbjct: 61 NLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFK 120 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + GL+ G S+R AEQ AAAE+LK Sbjct: 121 VECLVDGLSKIHGEGSSRRFAEQAAAAEILKLL 153 >gi|254411633|ref|ZP_05025409.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420] gi|196181355|gb|EDX76343.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420] Length = 278 Score = 66.5 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 86/209 (41%), Gaps = 8/209 (3%) Query: 5 RYSTLEKRIGY---AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +++G A L+ ALTH S+S +Y++LEF+GD ++ + S LLF Sbjct: 53 QLQKLVQKLGLLDNAPVQWDKLDLALTHPSMSRDV--NYDQLEFVGDAVVRMAASELLFE 110 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--LRKDVCSFMTSIQADVV 119 + +A G+ + + LVS +Q+A+E L ++ ++ + + + Sbjct: 111 TYPNASVGDFAAIRSVLVSDRILAQLAQEYGLERYLLLAPSAAADPRGEMSRLADAFEAI 170 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + + R++ K LQEW A + PEY++T Sbjct: 171 VGALYLSTHTLELIRPWLDPHFQRLTEDILKDPARQNYKDALQEWTQAHYKSLPEYRLTE 230 Query: 180 RS-GPDHDPRFTVVVEISGLAPAQGMDCS 207 + + RFT V G +G S Sbjct: 231 TNPIEADENRFTAQVWFKGQQLGEGQGRS 259 >gi|40063138|gb|AAR37985.1| ribonuclease III [uncultured marine bacterium 561] Length = 149 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 94 ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGK 152 + + RK SI AD VE++ A+ LD G + A + ++ + Sbjct: 15 GECLTLGVGERKSGGRHRASILADTVEAIAGAMLLDAGYDNAAPVILHWFADALGELQVD 74 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAA 211 +D+KT LQEW A+ P Y + GPDH F VV I G A G S+R A Sbjct: 75 GDKDSKTLLQEWLQARNLPLPSYDLVSVEGPDHAQEFEVVCLIKGQKNAFSGRGSSRRNA 134 Query: 212 EQVAAAEVLKREG 224 EQ AA+ + G Sbjct: 135 EQQAASVAIGELG 147 >gi|307179783|gb|EFN67973.1| Double-stranded RNA-specific editase Adar [Camponotus floridanus] Length = 1657 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 65/182 (35%), Gaps = 1/182 (0%) Query: 42 RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 +L FL + + I + + V +N +V + V E + + ++ Sbjct: 956 KLRFLINHMDLRTIVKCFNRGLFADDPDIICVGYNEIVRRGLHNTVYVEAIVNKYKKLYE 1015 Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 + + ++ + + + + + + K ++ + + Sbjct: 1016 CNPPMISANGNTLLDNSQSGHTTLMGQGNSPKSILKRTSEVDLEDVSSAKKRHKNPQPKN 1075 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 A + YKV ++GP H P FT+ V+I G +G +K+ A+ AA L+ Sbjct: 1076 AVCALNELKTGATYKVVGQTGPTHAPIFTIAVQIDGQTY-EGKGRTKKMAKHAAAELALR 1134 Query: 222 RE 223 Sbjct: 1135 NI 1136 >gi|218508317|ref|ZP_03506195.1| ribonuclease III [Rhizobium etli Brasil 5] Length = 75 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 26/51 (50%), Positives = 34/51 (66%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55 + LE IG+ FA + L++ALTH+S +YERLEFLGDR+LGL I Sbjct: 11 DRAKLENLIGHDFAEKERLDRALTHASARTEKGSNYERLEFLGDRVLGLCI 61 >gi|309362482|emb|CAP27969.2| hypothetical protein CBG_08071 [Caenorhabditis briggsae AF16] Length = 693 Score = 66.1 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 3/101 (2%) Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 G + K + + + Y + S Sbjct: 30 LSTKVHPQHWCGQHKFEADSPTNFYDYTTSKNKNKSAMCRVAEIARFNKLRHFYDLQDES 89 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H FTV + ++ +G S + A+Q AA L++ Sbjct: 90 GPAHKKLFTVRLVLNNEETFEGSGTSIKRAQQAAAETALEK 130 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 1/78 (1%) Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 + + + L + AK P +++ +G F + + G +G Sbjct: 389 MDPHYGHQINPVSRLIQVTQAKSRHHPTFELLSENGVSKYKEFVIQAK-YGEIVCEGKGP 447 Query: 207 SKRAAEQVAAAEVLKREG 224 +KR A++ AA E+L G Sbjct: 448 NKRLAKRAAAEEMLDLIG 465 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 5/83 (6%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPA 201 R ++ + + + + ++ GP HD + V + A Sbjct: 265 DRRFENTNYTQKSVISDIHEKAHLLKLNVVFETLKEEGPPHDRVYVVRCAFVSSNKEVKA 324 Query: 202 Q--GMDCSKRAAEQVAAAEVLKR 222 + G K+ A+Q A ++LK Sbjct: 325 EAIGKGKKKKVAQQEACTQLLKN 347 >gi|321463701|gb|EFX74715.1| hypothetical protein DAPPUDRAFT_108624 [Daphnia pulex] Length = 257 Score = 66.1 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 39/124 (31%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE + Y F N+ L +AL H S + ES ++ EFLGD+ LG + + Sbjct: 97 LEKLETILKYKFTNKLFLLQALRHPSAVSALDESNDKFEFLGDKQLGNINVQHKLISRAT 156 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 R + +VS ++ + + + A Sbjct: 157 FLWPPTLSRADPVVSDSLHWPHIPQVANPASWPPIPQRANPALTTSLYWPPLPQRANPAV 216 Query: 126 LYLD 129 Sbjct: 217 TMHW 220 >gi|219558950|ref|ZP_03538026.1| ribonuclease III [Mycobacterium tuberculosis T17] gi|289571114|ref|ZP_06451341.1| ribonuclease III rnc [Mycobacterium tuberculosis T17] gi|289544868|gb|EFD48516.1| ribonuclease III rnc [Mycobacterium tuberculosis T17] Length = 139 Score = 66.1 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 69/138 (50%), Gaps = 7/138 (5%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58 M R L +G + LL ALTH S ++ + ERLEFLGD +LGL I+ Sbjct: 1 MIRSR-QPLLDALGVDLPD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDA 58 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQ 115 LF+ EG+L+ S+V+ + + VAR L L + + + +SI Sbjct: 59 LFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSIL 118 Query: 116 ADVVESLIAALYLDGGIE 133 AD +ESL+ A+YL G+E Sbjct: 119 ADGMESLLGAIYLQHGME 136 >gi|262278196|ref|ZP_06055981.1| ribonuclease III [Acinetobacter calcoaceticus RUH2202] gi|262258547|gb|EEY77280.1| ribonuclease III [Acinetobacter calcoaceticus RUH2202] Length = 155 Score = 66.1 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 3/153 (1%) Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 +LV E ++A +L L+ + +S+ K SI AD VE++I A+Y+D G Sbjct: 1 MRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYIDSGDL 60 Query: 134 V---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 ++ +D K+ LQE+ A+ P Y+V G F Sbjct: 61 NLLTDIVLKWYVPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFK 120 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V I GL+ G S+R AEQ AAAE+LK Sbjct: 121 VECLIDGLSKIYGEGSSRRFAEQAAAAEILKLL 153 >gi|268576457|ref|XP_002643208.1| Hypothetical protein CBG08071 [Caenorhabditis briggsae] Length = 663 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 3/96 (3%) Query: 130 GGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 G + K + + + Y + SGP H Sbjct: 3 HPQHWCGQHKFEADSPTNFYDYTTSKNKNKSAMCRVAEIARFNKLRHFYDLQDESGPAHK 62 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 FTV + ++ +G S + A+Q AA L++ Sbjct: 63 KLFTVRLVLNNEETFEGSGTSIKRAQQAAAETALEK 98 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 1/78 (1%) Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 + + + L + AK P +++ +G F + + G +G Sbjct: 364 MDPHYGHQINPVSRLIQVTQAKSRHHPTFELLSENGVSKYKEFVIQAK-YGEIVCEGKGP 422 Query: 207 SKRAAEQVAAAEVLKREG 224 +KR A++ AA E+L G Sbjct: 423 NKRLAKRAAAEEMLDLIG 440 Score = 46.1 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 5/75 (6%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQ--GMDCS 207 R+ + + ++ GP HD + V + A+ G Sbjct: 248 HRQKSVISDIHEKAHLLKLNVVFETLKEEGPPHDRVYVVRCAFVSSNKEVKAEAIGKGKK 307 Query: 208 KRAAEQVAAAEVLKR 222 K+ A+Q A ++LK Sbjct: 308 KKVAQQEACTQLLKN 322 >gi|224613121|dbj|BAH24228.1| dsRNA-specific ribonuclease RNaseIII [Paulownia witches'-broom phytoplasma] Length = 157 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 24/49 (48%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +YK+ GP H +F V + G +K+AAEQ AA + L + Sbjct: 90 QYKIVQEQGPAHSKKFVAEVYLEKNLLGTGEGSTKKAAEQKAAHQALSK 138 >gi|328951087|ref|YP_004368422.1| double-stranded RNA binding domain protein [Marinithermus hydrothermalis DSM 14884] gi|328451411|gb|AEB12312.1| double-stranded RNA binding domain protein [Marinithermus hydrothermalis DSM 14884] Length = 158 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 25/49 (51%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T +GP+HDP F V ++G A G +KR AE++AA + Sbjct: 22 FDTRGTGPEHDPLFISDVMVNGTVVATGQGRTKREAERIAAELAYEALK 70 >gi|325284065|ref|YP_004256606.1| double-stranded RNA binding domain-containing protein [Deinococcus proteolyticus MRP] gi|324315874|gb|ADY26989.1| double-stranded RNA binding domain protein [Deinococcus proteolyticus MRP] Length = 169 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 22/54 (40%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H PRF V G QG S+R AE+ AA + L+ Sbjct: 16 QGLSPEFRVDGSGPAHAPRFVAEVWCDGQRLGQGEGRSRREAERGAAVQALEEL 69 >gi|149732822|ref|XP_001500801.1| PREDICTED: ribonuclease type III, nuclear isoform 3 [Equus caballus] Length = 1192 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 2/104 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 F EG L++ +SLV+ T ++VA EL + + Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQGWCIYLLHNCDC 1172 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 926 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 986 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1045 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1046 LHPLQLQEPNTDRQLIETSPV 1066 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 842 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 872 >gi|312213183|emb|CBX93265.1| similar to dicer-like protein 2 [Leptosphaeria maculans] Length = 1393 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFD 64 STLE+ IG+ F+ + LL A+TH+S Y+R EFLGD +L +I+ L+ H Sbjct: 1089 LSTLERLIGHTFSKKFLLLDAITHASYLGPNVHCDYQRTEFLGDAVLDFIITKRLYAHTP 1148 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 + + ++V+A + E + + Sbjct: 1149 PLEHQTMHAIRTAMVNASFLAFRMFETTIDEHLTN 1183 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + LL KALT S S E Y++LEF GD IL + S L E L+ + ++ Sbjct: 922 DLPLLVKALT--SSSTGEVEDYQQLEFYGDCILKFISSLHLMAANPKEPESFLTQKKGNI 979 Query: 79 VSAETCSQVARELDLASFIR 98 VS + ++ + L ++ Sbjct: 980 VSNGSLTRASLSAGLDRYVI 999 >gi|307150902|ref|YP_003886286.1| ribonuclease III [Cyanothece sp. PCC 7822] gi|306981130|gb|ADN13011.1| ribonuclease III [Cyanothece sp. PCC 7822] Length = 235 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 8/208 (3%) Query: 6 YSTLEKRIGYAFA---NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 TL +++G N SLL+ AL H S S +Y++LEF+GD ++ L + +L Sbjct: 12 LKTLVQKLGLPDTAAVNWSLLDLALIHPSFSREV--NYQQLEFVGDAVVRLAAAEVLLET 69 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + A GE + + +VS T ++ A L ++ S D ++ + L Sbjct: 70 YPDALVGEFAALRSMMVSDRTLAEFADVYGLERYLLTSERSSTDEAGRVSRLADGFEALL 129 Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 A +++ ++D+ + + ++ R + K LQEW A + + PEY+V Sbjct: 130 GALYLSTHNMKLIRPWLDELLQNKAAEIRLDPARLNYKDALQEWTQAHYKLLPEYRVQEV 189 Query: 181 SGPDH-DPRFTVVVEISGLAPAQGMDCS 207 ++ + RF V ++ G + Sbjct: 190 LLNNNKEERFLAEVWLNDQKLGAGTGRT 217 >gi|195395490|ref|XP_002056369.1| GJ10909 [Drosophila virilis] gi|194143078|gb|EDW59481.1| GJ10909 [Drosophila virilis] Length = 851 Score = 65.7 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 1/75 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAA 211 + L E P+Y + SGP H F VEI+G SK+ A Sbjct: 774 HDKHPVCVLNELTSKNKWTPPQYTLRDDSGPSHSRMFRFSVEINGQTYTPAQGCNSKKEA 833 Query: 212 EQVAAAEVLKREGIW 226 + AA L+ GI Sbjct: 834 KLNAAKLCLRALGIL 848 >gi|301107618|ref|XP_002902891.1| ribonuclease 3, putative [Phytophthora infestans T30-4] gi|262098009|gb|EEY56061.1| ribonuclease 3, putative [Phytophthora infestans T30-4] Length = 312 Score = 65.3 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 9/112 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLIS 56 L++RIG F + +LL+ ALTH + + S LEFLGD +LG + Sbjct: 123 LEKLQERIGVKFQDVTLLQSALTHHGCLPTNPVPEDVPVVRLSNRSLEFLGDSLLGAAAA 182 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ +EG+LS ++LV+ +T S+++ +L + + + Sbjct: 183 GYVYQMLPRHQEGQLSRAKSALVNNDTLSKISADLGITDLLLWPPGFNEARG 234 >gi|212537957|ref|XP_002149134.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224] gi|210068876|gb|EEA22967.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224] Length = 296 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 76/223 (34%), Gaps = 17/223 (7%) Query: 17 FANRSLLEKALTHSS-----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 + SL TH +++Y+RLE LGD + ++ + L+++HF G + Sbjct: 42 IHDASLERAVFTHPGTPVHIAPEGMEQNYDRLEVLGDAYVEVIATRLIWDHFKDMPAGRM 101 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAALYLDG 130 S LV ET + A + + VS+ + I+ DV E+ +AA+ L Sbjct: 102 SQVREDLVKNETLAGFASQYGFDKRVSVSAPEEQKAQPKRWLKIRGDVFEAYVAAVVLSN 161 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD------ 184 + + + + AK ++ K+ + Sbjct: 162 PDHGFDIVEQWLRELWLPRLSHVQPVQTVLRHKEQLAKRVMSKGIKLRYVEEQPAKQLDG 221 Query: 185 HDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + V + G +K A AA + L+ Sbjct: 222 GMQTYYIGVYLTGWGWHDQHLGSGSGLNKAIAGDEAANKALQN 264 >gi|212537955|ref|XP_002149133.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224] gi|210068875|gb|EEA22966.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224] Length = 374 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 76/223 (34%), Gaps = 17/223 (7%) Query: 17 FANRSLLEKALTHSS-----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 + SL TH +++Y+RLE LGD + ++ + L+++HF G + Sbjct: 120 IHDASLERAVFTHPGTPVHIAPEGMEQNYDRLEVLGDAYVEVIATRLIWDHFKDMPAGRM 179 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAALYLDG 130 S LV ET + A + + VS+ + I+ DV E+ +AA+ L Sbjct: 180 SQVREDLVKNETLAGFASQYGFDKRVSVSAPEEQKAQPKRWLKIRGDVFEAYVAAVVLSN 239 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD------ 184 + + + + AK ++ K+ + Sbjct: 240 PDHGFDIVEQWLRELWLPRLSHVQPVQTVLRHKEQLAKRVMSKGIKLRYVEEQPAKQLDG 299 Query: 185 HDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + V + G +K A AA + L+ Sbjct: 300 GMQTYYIGVYLTGWGWHDQHLGSGSGLNKAIAGDEAANKALQN 342 >gi|32450506|gb|AAH54003.1| RNASEN protein [Homo sapiens] Length = 1192 Score = 64.9 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 2/104 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 F EG L++ +SLV+ T ++VA EL + + Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQVWSIYLLSNCDC 1172 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 926 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 986 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1045 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1046 LHPLQLQEPNTDRQLIETSPV 1066 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 842 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 872 >gi|114600831|ref|XP_001156889.1| PREDICTED: ribonuclease III, nuclear isoform 1 [Pan troglodytes] Length = 1189 Score = 64.9 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 2/104 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 F EG L++ +SLV+ T ++VA EL + + Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQVWSIYLLSNCDC 1172 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 926 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 986 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1045 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1046 LHPLQLQEPNTDRQLIETSPV 1066 Score = 43.4 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 842 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 872 >gi|15807272|ref|NP_296002.1| hypothetical protein DR_2281 [Deinococcus radiodurans R1] gi|6460094|gb|AAF11833.1|AE002060_12 hypothetical protein DR_2281 [Deinococcus radiodurans R1] Length = 164 Score = 64.6 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 21/45 (46%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H+ F V V SG A +K+ AE++AA L+ Sbjct: 49 EAHGPAHERTFHVKVWSSGQVIATAEGRTKKDAERLAAELALREL 93 >gi|226286856|gb|EEH42369.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18] Length = 1450 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY F + L +A TH S + SY+RLEFLGD IL +I +FN + Sbjct: 1128 FRDIESLVGYIFNKKVFLAQAFTHPS-NPGSTMSYQRLEFLGDSILDHIIVDHIFNSPRN 1186 Query: 66 AKEGELSVRFNSLVSAETCSQVAREL 91 + ++ + SL +A+ + + + Sbjct: 1187 FQHVDMHLMRASLANADFLAFLCIGM 1212 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 2/99 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + +L+ AL +Y+R+EFLGD IL S L EG LS + Sbjct: 957 FTDLNLVITALCAP--DAREATNYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNAKD 1014 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 +VS + S A E L FI + Sbjct: 1015 EVVSNKRLSYAAIETGLDKFIFMDIFTGVKWRPRYNKAH 1053 >gi|225684610|gb|EEH22894.1| dicer [Paracoccidioides brasiliensis Pb03] Length = 1415 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + +E +GY F + L +A TH S + SY+RLEFLGD IL +I +FN + Sbjct: 1128 FRDIESLVGYIFNKKVFLAQAFTHPS-NPGSTMSYQRLEFLGDSILDHIIVDHIFNSPRN 1186 Query: 66 AKEGELSVRFNSLVSAETCSQVAREL 91 + ++ + SL +A+ + + + Sbjct: 1187 FQHVDMHLMRASLANADFLAFLCIGM 1212 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 2/99 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + +L+ AL +Y+R+EFLGD IL S L EG LS + Sbjct: 957 FTDLNLVITALCAP--DAREATNYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNAKD 1014 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 +VS + S A E L FI + Sbjct: 1015 EVVSNKRLSYAAIETGLDKFIFMDIFTGVKWRPRYNKAH 1053 >gi|124486133|ref|YP_001030749.1| hypothetical protein Mlab_1315 [Methanocorpusculum labreanum Z] gi|124363674|gb|ABN07482.1| ribonuclease III [Methanocorpusculum labreanum Z] Length = 145 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 5/146 (3%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59 + YS L +IGY FAN LL ALT ++ + + E+ + L LGD +L L++ L Sbjct: 1 MNYSDLYAKIGYTFANVDLLLHALTRTAYARENELSMSETMDSLAVLGDAVLDLIVIRRL 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 +GE++ + LV+ ++A ++ L ++R + + A+ Sbjct: 61 I-EEGEFDKGEITRKKIDLVNMTVVRKLAEDIGLPEYMRWGKGELRMQIWTSGRVSAECF 119 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ 145 E+L+ A YLDGG+E + +D W Sbjct: 120 EALMGAAYLDGGVEASSAILDHVWMP 145 >gi|326428784|gb|EGD74354.1| hypothetical protein PTSG_06363 [Salpingoeca sp. ATCC 50818] Length = 333 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 61/229 (26%), Gaps = 29/229 (12%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L R G F + LL +ALTH + RL LG+ +L + L+ +F + Sbjct: 53 IRALAARTGEKFKDEKLLLQALTHRTY--DGYAHNGRLSLLGETVLSQSVVEHLYFNFPN 110 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLAS---FIRVSSDLRKDVCSFMTSIQADVVE-- 120 + + +SA+ + R+L + + Sbjct: 111 LYSTAIKSVRDRFLSADVLGPIGRKLGFQDALLYKHAEEGEAVKAAKPFEHNKRAKYHVD 170 Query: 121 ---------------------SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT 159 +L FV + L + Sbjct: 171 PVPPQKIPASAVAAAFKAFVGALYVDQGALQAKRYVKDFVVHTLENSDLSEFIKLEHPRR 230 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPD-HDPRFTVVVEISGLAPAQGMDCS 207 LQ A Y+V SG H P F V V A G S Sbjct: 231 VLQRLHAASGREPLAYRVIEESGRATHMPTFLVGVFAGNQKLATGAGYS 279 >gi|332024427|gb|EGI64625.1| Double-stranded RNA-specific editase Adar [Acromyrmex echinatior] Length = 673 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K ++ + + A + Y V ++GP H P FT+ V+I G +G +K+ A Sbjct: 86 KRHKNPQPKNAVCALNELKTGATYNVVGQTGPTHAPIFTIAVQIDGQTY-EGKGRTKKMA 144 Query: 212 EQVAAAEVLKRE 223 + AA L+ Sbjct: 145 KHAAAELALRNI 156 >gi|39942154|ref|XP_360614.1| hypothetical protein MGG_03157 [Magnaporthe oryzae 70-15] gi|145015863|gb|EDK00353.1| hypothetical protein MGG_03157 [Magnaporthe oryzae 70-15] Length = 402 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 82/267 (30%), Gaps = 55/267 (20%) Query: 16 AFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 + S+ + A THSS+ + +SY+RLE+LGD L L + ++ F + G S Sbjct: 122 EIKDPSIEKAAFTHSSVIGNKLSGVQSYDRLEWLGDAYLELFATCFIYQTFPALSHGASS 181 Query: 73 VRFNSLVSAETCSQVARELD-------LASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 L+ ++ +Q + F ++ + + T I D+ E+ + A Sbjct: 182 QLREVLIRNDSLAQWTQAYGLEKRARLPPEFAGLNHSGQAMMQKKRTKIYGDLFEAYVGA 241 Query: 126 LYLDGGIEVAGTFVDKYWKQRALK------------------------------------ 149 + + A + Sbjct: 242 IIASDPVHGTDRAAVWLKSLWAPRLKREIHAEEKRQRCLVASTTSLESDPIQGPTDNYAV 301 Query: 150 -SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD---PRFTVVVEIS-----GLAP 200 + K R K L K + D + P F V V + GL Sbjct: 302 AAPKPNRSPKEALAAMIVVKGVKLSYVDLPAPKKKDKNNNLPLFAVAVVLDGWGESGLQL 361 Query: 201 AQGMDCSKRAAEQVAAAEVLKREGIWT 227 G+ +K A AA + + + T Sbjct: 362 GMGVAKNKSEAGHAAAQRAMDNKKLIT 388 >gi|148277633|ref|NP_001091684.1| adenosine deaminase acting on RNA [Apis mellifera] gi|146260809|gb|ABQ14707.1| adenosine deaminase [Apis mellifera] Length = 620 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K ++ + + A + YKV ++GP H P FT+ V+I G +G +K+ A Sbjct: 27 KRNKNPQPKNAVCALNELKSGAVYKVVDQTGPTHAPIFTIAVQIDGQTY-EGKGRTKKMA 85 Query: 212 EQVAAAEVLKRE 223 + AA L+ Sbjct: 86 KHAAAELALRNI 97 >gi|257058554|ref|YP_003136442.1| ribonuclease III [Cyanothece sp. PCC 8802] gi|256588720|gb|ACU99606.1| ribonuclease III [Cyanothece sp. PCC 8802] Length = 323 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFN 61 + S++E +IG F N LL L H S + + ++ ERLE+LG+ IL L+I+ L+ Sbjct: 4 KSSSVEDKIGINFKNSELLFLCLIHPSYAQQINEPEKDNERLEYLGETILRLVITDYLYQ 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94 + +LS + L E + + L L Sbjct: 64 NCPYLAVSKLSALRDKLEEGERLTTLWFNLGLG 96 >gi|218245517|ref|YP_002370888.1| ribonuclease III [Cyanothece sp. PCC 8801] gi|218165995|gb|ACK64732.1| ribonuclease III [Cyanothece sp. PCC 8801] Length = 323 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFN 61 + S++E +IG F N LL L H S + + ++ ERLE+LG+ IL L+I+ L+ Sbjct: 4 KSSSVEDKIGINFKNSELLFLCLIHPSYAQQINEPEKDNERLEYLGETILRLVITDYLYQ 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94 + +LS + L E + + L L Sbjct: 64 NCPYLAVSKLSALRDKLEEGERLTTLWFNLGLG 96 >gi|530452|emb|CAA83781.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 84 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFN 61 + ++ ++ + ++ALTH+S ++ + SY+RLEFLGD IL + +S LF Sbjct: 1 MNIKNFFEKYNIKINDQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYVSKFLFF 60 Query: 62 HFDSAKEGELSVRFNSLVSA 81 H+ EGEL+ +S V Sbjct: 61 HYSKLGEGELTRLRSSTVRE 80 >gi|269115408|gb|ACZ26274.1| dicer-1-like protein [Mayetiola destructor] Length = 227 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 62/222 (27%), Gaps = 21/222 (9%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 Y +EK++ Y F ++S + +A +H S ++ +Y+ L+F+GD I+ L+ LF Sbjct: 8 YEQIEKKLNYTFRDKSFMLQAFSHESFTANDICPNYDSLDFVGDGIINYLLCRHLFREAG 67 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 F C + K SL + Sbjct: 68 GQFSANEIEFFT-NTLKSNCCFATVSIRHGIHNFFRLMDTKLNG------------SLAS 114 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + R K+ + E + T G Sbjct: 115 FVKFVQKNQCQPINDVMINIMRRDIEFICETRPKSAIAELSGMDHEAYFSKPETIGPGKI 174 Query: 185 HDPRFTVVVEISGLAPAQGMDCSK--RAAEQVAAAEVLKREG 224 V V + S+ A+ AA L + Sbjct: 175 -----MVQVILPNYENQTFSSISRDPNLAKWGAAKSALLQLK 211 >gi|307205142|gb|EFN83585.1| Double-stranded RNA-specific editase Adar [Harpegnathos saltator] Length = 661 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++ + + A + YKV ++GP H P FT+ V+I G +G +K+ A+ Sbjct: 70 HKNPQPKNAVCALNELKTGAIYKVVGQTGPTHAPIFTIAVQIDGQTY-EGKGRTKKMAKH 128 Query: 214 VAAAEVLKRE 223 AA L+ Sbjct: 129 AAAELALRNI 138 >gi|321463655|gb|EFX74669.1| hypothetical protein DAPPUDRAFT_251524 [Daphnia pulex] Length = 244 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE+ + Y F ++LL +AL +S ++ YERL LGD LG L + + F+ Sbjct: 40 LEKLEEILNYEFRYKNLLLQALIYSRKIAVFRPCYERL-HLGDAFLGGLAAEMCFDALPF 98 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 LS + LV + + + F++ + + Q +A Sbjct: 99 YPPSVLSELKSVLVCNNSLGVLVVKFKFHKFLKRLPREIQTLIDTFAKKQKANGHKFPSA 158 Query: 126 LY 127 Y Sbjct: 159 YY 160 >gi|254572848|ref|XP_002493533.1| RNAase III [Pichia pastoris GS115] gi|238033332|emb|CAY71354.1| RNAase III [Pichia pastoris GS115] gi|328354643|emb|CCA41040.1| ribonuclease III [Pichia pastoris CBS 7435] Length = 524 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 85/219 (38%), Gaps = 16/219 (7%) Query: 18 ANRSLLEKALTHSSIS--------HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 + L K TH S + SYERLE+LGD +L L +++++ F ++ EG Sbjct: 168 TDPVLRSKVFTHKSAVTQAEEDSIEAANSSYERLEYLGDAVLELAVTSIVMKEFPASSEG 227 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 LSV +VS ++ + + I AD+ E+ I ALY+ Sbjct: 228 HLSVCRQQIVSNSNLENYSKLYGFPEKLSSLMSKEET-DKNNGKIYADIFEAYIGALYVQ 286 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG------VTPEYKVTFRSGP 183 ++ R + + K+ L + A K + VT +GP Sbjct: 287 NNNDLTMIQEWLGKLARPVIEAMKMKRDKSYLNKSAKEKLYALIGSAKSAPKYVTLDNGP 346 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 D + V VE+ G +G+ S + A AA L+ Sbjct: 347 ARD-EWLVQVEMEGEIIGKGIGGSVKDARTRAAMAALEN 384 >gi|193627224|ref|XP_001952647.1| PREDICTED: hypothetical protein LOC100161769 [Acyrthosiphon pisum] Length = 732 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L E+ + P++ SGP H F + V ++G+ +K+ A+ Sbjct: 656 KHPVSLLNEFCAKRKWDIPKFNTLDESGPSHRKTFIMTVVVNGVQYCSSRCQTKKLAKME 715 Query: 215 AAAEVLKREGIW 226 AA E LK G+ Sbjct: 716 AAKECLKEIGLL 727 >gi|293446921|ref|ZP_06663343.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B088] gi|291323751|gb|EFE63179.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B088] Length = 182 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 3/169 (1%) Query: 45 FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 FLGD IL +I+ L++ F EG++S +LV T +++ARE +L +R+ Sbjct: 1 FLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGEL 60 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQ 162 K SI AD VE+LI ++LD I+ + + G ++D KT LQ Sbjct: 61 KSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQ 120 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 E+ + P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 EYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 169 >gi|309800534|ref|ZP_07694685.1| ribonuclease III [Streptococcus infantis SK1302] gi|308115845|gb|EFO53370.1| ribonuclease III [Streptococcus infantis SK1302] Length = 83 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 5/77 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L S L+ F ++SLLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELE-SVLQDSFELVFTDKSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNHFDSAKEGELSV 73 LF + L Sbjct: 60 EYLFKKYPKKTRRGLVK 76 >gi|260172508|ref|ZP_05758920.1| ribonuclease III [Bacteroides sp. D2] Length = 214 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 3/112 (2%) Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFG 170 + + E+ I A+YLD G E F+++ R + K R + K++L EW+ Sbjct: 1 MYGNAFEAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKM 60 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + D +P F V I GL G SK+ ++Q AA +K+ Sbjct: 61 EVSFELIEQFLDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 112 >gi|544827|gb|AAB29618.1| E3L product [variola virus VAR, India-1967, Peptide, 190 aa] Length = 190 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 31/128 (24%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + A + +I Sbjct: 57 YSSDDIPPRWFMTTEADKPDAMTMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKNA 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 T + E+ GP + P F V+I G + SKR A+ A Sbjct: 117 MPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174 Query: 216 AAEVLKRE 223 A + + Sbjct: 175 AKLAVDKL 182 >gi|255524266|ref|ZP_05391225.1| ribonuclease III [Clostridium carboxidivorans P7] gi|255512091|gb|EET88372.1| ribonuclease III [Clostridium carboxidivorans P7] Length = 96 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLL 59 + LE+++ F ++ LL+ ALTHSS ++ + ERLEFLGD +L + IS L Sbjct: 10 KNDTFVELEQKLDVCFEDKELLKIALTHSSYANGKKNIKFNERLEFLGDSVLQISISEYL 69 Query: 60 FNHF 63 F ++ Sbjct: 70 FLNY 73 >gi|154484153|ref|ZP_02026601.1| hypothetical protein EUBVEN_01864 [Eubacterium ventriosum ATCC 27560] gi|149735195|gb|EDM51081.1| hypothetical protein EUBVEN_01864 [Eubacterium ventriosum ATCC 27560] Length = 379 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 57/280 (20%), Positives = 88/280 (31%), Gaps = 61/280 (21%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILG--------------- 52 +E++IGY F NR LL +A S S E+ E LEF+GD+ L Sbjct: 16 VERQIGYKFVNRDLLVQAFVRKSYSMENGGENNEVLEFIGDKALDLSVVKTLTDKYGHMI 75 Query: 53 ---LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 + EG+L+ + LV E S EL LA F+ +S K+ Sbjct: 76 SDEPDYEDEDDEFYCEYSEGKLTHLKSLLVRKEYLSARIDELKLAPFLIMSKGDLKNNID 135 Query: 110 FMTSIQADVVESLIAALYLD-----------------------------------GGIEV 134 TS++ D+ E++I A+ LD E Sbjct: 136 KNTSVKEDLFEAIIGAVTLDTLWDFDKIQDVVGVMLRPELILDADVTDDNYIKLIQDWES 195 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + + R K L + + YK T + P + + Sbjct: 196 KHYNDLPKFLYKERGRNESIRVGKQSLYWRYGSSTPESVYYKETCYTYPYGNEHLRYECK 255 Query: 195 I---SGLAPAQGMDCSKRAAEQVAAAEVLKREG----IWT 227 + L SK A + K +WT Sbjct: 256 MKLSDDLPEFGAYGESKSDARRKVCECAYKFLEEEDLLWT 295 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 17/174 (9%), Positives = 46/174 (26%), Gaps = 6/174 (3%) Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 + L+ + + + + + + ++ + C Sbjct: 199 NDLPKFLYKERGRNESIRVGKQSLYWRYGSSTPESVYYKETCYTYPYGNEHLRYECKMKL 258 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT-----ELQEWAHA 167 S + + + + + +L+ A Sbjct: 259 SDDLPEFGAYGESKSDARRKVCECAYKFLEEEDLLWTIKDEIENPNKAESISQLEILARR 318 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220 + PEY+ + + +P + V I SK+ A++ AA ++L Sbjct: 319 GYFSMPEYEYIEQYDENGNPIWNVECHIEEEKYYFDAEASSKKVAKKQAAYDML 372 >gi|94272417|ref|ZP_01292119.1| Ribonuclease III [delta proteobacterium MLMS-1] gi|93450139|gb|EAT01469.1| Ribonuclease III [delta proteobacterium MLMS-1] Length = 156 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 1/132 (0%) Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 V+ E + +AR+L L FIR+ SI A E+L+ A+YLDGG E A Sbjct: 3 VNEEHLAGMARQLALGEFIRLGRGEEATGGRDKPSILAATFEALVGAVYLDGGYEPALAL 62 Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS-GPDHDPRFTVVVEISG 197 + + R + + GPDHD RFTV VE+ G Sbjct: 63 LRPLFAPWVANPPLPRISDSKSALQEVLQQRHGEGPVYYLENEEGPDHDKRFTVRVELQG 122 Query: 198 LAPAQGMDCSKR 209 +G K+ Sbjct: 123 KVLGRGRGRGKK 134 >gi|9627565|ref|NP_042088.1| double-strand RNA-binding protein [Variola virus] gi|465071|sp|P33863|VE03_VAR67 RecName: Full=Protein E3 gi|297225|emb|CAA48985.1| E3L [Variola virus] gi|745160|prf||2015436AY E3L gene Length = 190 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 32/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + A + +I Sbjct: 57 YSSDDIPPRWFMTTEADKPDAMTMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKNA 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174 Query: 216 AAEVLKRE 223 A + + Sbjct: 175 AKLAVDKL 182 >gi|224613141|dbj|BAH24245.1| dsRNA-specific ribonuclease RNaseIII [Korean potato witches'-broom phytoplasma] Length = 163 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 3/153 (1%) Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 ++ + V ++ A+E+ L ++I + +K + SI +D E+L A+YLD Sbjct: 5 MTKKRAQAVCIDSLFIYAKEIKLKNYILLGKGEKKRYDNNY-SIISDAFEALFGAIYLDL 63 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 G K + YK+ G H+ F Sbjct: 64 GFNQTQKIFHNIVLPYLKKVINIIDFKTK--LQELIQTNRHNINYKIVSEQGLAHEKEFI 121 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + +GM +K+A+EQ AA + L + Sbjct: 122 TEVYLEEQFLGRGMGKTKKASEQKAAQQALIKI 154 >gi|321454554|gb|EFX65720.1| hypothetical protein DAPPUDRAFT_117031 [Daphnia pulex] Length = 322 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 78/217 (35%), Gaps = 25/217 (11%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLF 60 + + L ++IGY F N++LL +A+THS+ + + S E E LGD LG + Sbjct: 67 SFSLTALPEKIGYKFRNKNLLGRAMTHSTANQTKCPSQDGENFEVLGDVALGNFFAMARV 126 Query: 61 NH----------FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 NH + +G+LS+ +++ +T + + + D + Sbjct: 127 NHTVVLELLLDLNPNYNQGQLSLLKSAITCNDTFADLVIIPSAEGYRANEIDYPE----- 181 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 I AD E+LI AL +D E + R LQ Sbjct: 182 ---IYADAFEALIGALRIDCEREDRIIRRVVLNLMDDVIKKYTREVPICPLQRIRQTPLK 238 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 V + G F V++++ G S Sbjct: 239 VNFRERPNLPDG-----SFHVLLDVQNKQYFHGSGPS 270 >gi|18640289|ref|NP_570445.1| CMLV055 [Camelpox virus] gi|18482965|gb|AAL73762.1|AF438165_52 putative dsRNA-binding PKR inhibitor [Camelpox virus M-96] gi|19717992|gb|AAG37517.1| CMP55L [Camelpox virus CMS] Length = 190 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 32/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + D + +I Sbjct: 57 YSSDDIPPRWFMTTEADKPDTDAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKNT 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174 Query: 216 AAEVLKRE 223 A + + Sbjct: 175 AKLAVDKL 182 >gi|320585938|gb|EFW98617.1| RNA helicase rnase [Grosmannia clavigera kw1407] Length = 2671 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLIST 57 +TLE+ +GY F SLL +A+TH S ERLEF+GD +L +I Sbjct: 1241 TTLEELLGYQFRRPSLLAEAMTHPSTPGIREGGCMERLEFIGDAVLDYVIVQ 1292 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 ++RSL+ A++ + ++YE LEF+GD +L L+ + A EG LS+ + Sbjct: 1073 SDRSLITTAISAP--AARLHDNYEVLEFIGDAVLKLMAAANCAAQNLDAPEGHLSLFKDR 1130 Query: 78 LVSAETCSQVARELDLASF 96 LV+ + A E L F Sbjct: 1131 LVANSRLCRAATEFGLDRF 1149 >gi|157088318|gb|ABV21735.1| dsRNA-dependent protein kinase [Paralichthys olivaceus] Length = 688 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 21/49 (42%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+ GPDH FT+ ++ G +K+ A Q AA L+ Sbjct: 23 YEDVGADGPDHIKTFTIRAIVNNKVFPDGTGNNKKEARQNAAQNALRGL 71 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + +Y + R G H+P+F + I+ G + + A+Q AA Sbjct: 229 SHDYVLEKRCGQAHNPQFFYKLVINNKEYPVGEGKTVKEAKQNAAQLA 276 >gi|145540581|ref|XP_001455980.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|74834199|emb|CAI44479.1| Dicer-like ribonuclease with helicase and Rnase III domains [Paramecium tetraurelia] gi|124423789|emb|CAK88583.1| unnamed protein product [Paramecium tetraurelia] Length = 1797 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 54/154 (35%), Gaps = 47/154 (30%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI-------------------------------- 32 ++LE IGY F ++S+L +A+TH S Sbjct: 1499 NLNSLENIIGYKFNDQSILIQAITHQSFLSVLDFYNYRKCKCNFVEFQNTKNILQISNLN 1558 Query: 33 ---------------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 + SYERLEFLGD +L ++ L F+ K +L+++ Sbjct: 1559 QNDINESLLTQLNQQQNRIDMSYERLEFLGDSVLDSVVVEWLVKEFNKEKVEDLALKKQC 1618 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +V + + V L F+ + + + Sbjct: 1619 VVCNKALALVTLHYKLDQFLLHPTLHKVAHENHQ 1652 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 2/94 (2%) Query: 10 EKRIGYAFANR--SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 ++ Y+ + LL K + Q +Y+ LEFLGD L LL S +F F A Sbjct: 1292 QRNFKYSIHDIDNELLHKCFQSQQFNQDDQTNYQVLEFLGDANLKLLSSIEVFVQFPFAN 1351 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 E L + +VS E + + + I+ ++ Sbjct: 1352 EHLLHLERARIVSNENLRKFSIIHRFFNCIKCTN 1385 >gi|94486111|gb|ABF25216.1| double-stranded RNA binding protein [Variola virus] gi|94486314|gb|ABF25418.1| double-stranded RNA binding protein [Variola virus] gi|94486517|gb|ABF25620.1| double-stranded RNA binding protein [Variola virus] gi|94486719|gb|ABF25821.1| double-stranded RNA binding protein [Variola virus] gi|94487125|gb|ABF26225.1| double-stranded RNA binding protein [Variola virus] gi|94490151|gb|ABF29236.1| double-stranded RNA binding protein [Variola virus] gi|109724086|gb|ABG43212.1| double-stranded RNA binding protein [Variola virus] gi|109725104|gb|ABG44225.1| double-stranded RNA binding protein [Variola virus] gi|109725309|gb|ABG44429.1| double-stranded RNA binding protein [Variola virus] gi|109725512|gb|ABG44631.1| double-stranded RNA binding protein [Variola virus] gi|109725716|gb|ABG44834.1| double-stranded RNA binding protein [Variola virus] gi|109725919|gb|ABG45036.1| double-stranded RNA binding protein [Variola virus] gi|109726529|gb|ABG45643.1| double-stranded RNA binding protein [Variola virus] Length = 190 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 31/128 (24%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + A + I Sbjct: 57 YSSDDIPPRWFMTTEADKPDAMAMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWKNA 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174 Query: 216 AAEVLKRE 223 A + + Sbjct: 175 AKLAVDKL 182 >gi|94488139|gb|ABF27234.1| double-stranded RNA binding protein [Variola virus] gi|94488339|gb|ABF27433.1| double-stranded RNA binding protein [Variola virus] gi|109726123|gb|ABG45239.1| double-stranded RNA binding protein [Variola virus] Length = 192 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 35/128 (27%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + A + A + + + K + Sbjct: 57 YSSDDIPPRWFMTTEADKPDAMAMTMADAIINDVSREKSMREDHKSFDDVIPAKKIIDWK 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 +A + + GP + P F V+I G + SKR A+ A Sbjct: 117 NANPVTIINEYCQITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 176 Query: 216 AAEVLKRE 223 A + + Sbjct: 177 AKLAVDKL 184 >gi|13508284|ref|NP_110234.1| ribonuclease III [Mycoplasma pneumoniae M129] gi|2500551|sp|P75233|RNC_MYCPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|1673968|gb|AAB95945.1| ribonuclease III [Mycoplasma pneumoniae M129] gi|301633525|gb|ADK87079.1| ribonuclease III [Mycoplasma pneumoniae FH] Length = 282 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 ++ K + N E A HSS + ++ SY+RLEFLGD ++ +++ LF Sbjct: 17 KFVAFFKSLNIEPQNWQFYEDAFVHSSYVNENEDARASYDRLEFLGDALIDFIVAKKLFE 76 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 + + EG L+ +V E +++ +EL+ +FI++ + Sbjct: 77 LYPNYNEGMLTRTKIEIVKGENLNRIGKELNFGNFIKLGKGMPY 120 >gi|147906536|ref|NP_001091256.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Xenopus laevis] gi|121308150|emb|CAM07152.1| double stranded RNA activated protein kinase 1 [Xenopus laevis] Length = 578 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 28/53 (52%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + ++K +GP HDPRFT V ++G +G D K+ AE +AA L Sbjct: 20 SYQFKKVEATGPSHDPRFTFQVFVNGEKLGEGQDKKKKGAECMAAKMALSTLK 72 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 18/61 (29%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + R G H P F I + +K+ A++ AA L Sbjct: 124 HELCQKHTLIVTFLDERHGQPHIPEFFCKAVIGKEEFPKAKGKNKKEAKRKAAHLALISL 183 Query: 224 G 224 Sbjct: 184 K 184 >gi|113195237|ref|YP_717367.1| double-stranded RNA binding protein [Taterapox virus] gi|90660513|gb|ABD97626.1| double-stranded RNA binding protein [Taterapox virus] Length = 190 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + AD + +I Sbjct: 57 YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKNA 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPIFYACVDIDGRVFDKADGKSKRDAKNNA 174 Query: 216 AAEVLKRE 223 A + + Sbjct: 175 AKLAVDKL 182 >gi|321460745|gb|EFX71784.1| hypothetical protein DAPPUDRAFT_111332 [Daphnia pulex] Length = 134 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 2/97 (2%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LEK +GY F N+ L+ ALTH++ + + +RLE LGD+ LG +I + + + Sbjct: 38 LEKILGYEFQNKDNLKLALTHTTSNPIKCPSKDSDRLETLGDKFLGAMIMVKYYKTYPTY 97 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 GEL+ + + T + +A ++ L + + + Sbjct: 98 GAGELANLTSMITCNGTFAVLAVKMGLHGHLNQNMNP 134 >gi|212291457|gb|ACJ23858.1| double-stranded RNA-dependent protein kinase [Oplegnathus fasciatus] Length = 704 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 23/47 (48%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y GPDH FT V ++G A G+ +KR A+ AA LK Sbjct: 23 YNDLGCVGPDHIKTFTQRVVLNGKAYPDGVGKNKREAKHNAAKNALK 69 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L K + ++ R GP H+PRF + I+ G S + A++ AA Sbjct: 223 LVNHYCQKTNGSHKFIEERRCGPPHNPRFFYKLVINDKDYPVGEGKSAKEAKKNAAQLAW 282 Query: 221 KRE 223 Sbjct: 283 SAL 285 >gi|149639721|ref|XP_001515387.1| PREDICTED: similar to Protein kinase, interferon-inducible double stranded RNA dependent activator [Ornithorhynchus anatinus] Length = 397 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + K + + LQE A PEY ++ SGP H F + ++ G Sbjct: 199 PDSCKQPQKPKSPINSLQELAMRCGWSLPEYTLSKESGPAHKKEFIMNCKLE-TYVETGT 257 Query: 205 DCSKRAAEQVAAAEVLKRE 223 SK+ A++ AA ++L + Sbjct: 258 GASKKQAKESAAEKLLAKL 276 >gi|111184243|gb|ABH08163.1| HSPV060 [Horsepox virus] Length = 190 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + AD + +I Sbjct: 57 YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174 Query: 216 AAEVLKRE 223 A + + Sbjct: 175 AKLAVDKL 182 >gi|37551503|gb|AAQ93155.1| double-stranded RNA binding protein [Vaccinia virus] Length = 190 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + AD + +I Sbjct: 57 YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174 Query: 216 AAEVLKRE 223 A + + Sbjct: 175 AKLAVDKL 182 >gi|137621|sp|P21081|VE03_VACCC RecName: Full=Protein E3; AltName: Full=p25 gi|335388|gb|AAA48040.1| putative E3L [Vaccinia virus Copenhagen] Length = 190 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + AD + +I Sbjct: 57 YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174 Query: 216 AAEVLKRE 223 A + + Sbjct: 175 AKLAVDKL 182 >gi|9633838|ref|NP_051918.1| gp029L [Rabbit fibroma virus] gi|6578557|gb|AAF17911.1|AF170722_29 gp029L [Rabbit fibroma virus] Length = 116 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 34/103 (33%) Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 D V +L + G V + + + + + Sbjct: 2 DPVSALWYYDTMTFGDGVISETKPIFGDTIKYEKIVSWQTKNPCTVLNEYCQITSREWSI 61 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 R+G H+P FT VV +SG + +K+ A + AA E Sbjct: 62 NVTRTGQSHNPTFTAVVTVSGYSFKSATGSNKKEARKNAAKEA 104 >gi|30519433|emb|CAD90608.1| F3L protein [Cowpox virus] Length = 190 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 34/128 (26%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + ADV+ +I Sbjct: 57 YSSDDIPPRWFMTTEADKTDADVMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174 Query: 216 AAEVLKRE 223 A + + Sbjct: 175 AKLAVDKL 182 >gi|88900676|gb|ABD57588.1| VACV056 [Vaccinia virus] Length = 190 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 33/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + ADV+ I Sbjct: 57 YSSDDIPPRWFMTTEADKPDADVMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174 Query: 216 AAEVLKRE 223 A + + Sbjct: 175 AKLAVDKL 182 >gi|2772689|gb|AAB96428.1| dsRNA dependent PK inhibitor [Vaccinia virus] gi|38348925|gb|AAR17901.1| double-stranded RNA binding protein [Vaccinia virus] gi|47088378|gb|AAT10448.1| double-stranded RNA binding protein [Vaccinia virus] gi|90819719|gb|ABD98529.1| VACV-DUKE-067 [Vaccinia virus] gi|160857941|emb|CAM58229.1| double-stranded RNA binding protein [Vaccinia virus Ankara] Length = 190 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 33/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + ADV+ I Sbjct: 57 YSSDDIPPRWFMTTEADKPDADVMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174 Query: 216 AAEVLKRE 223 A + + Sbjct: 175 AKLAVDKL 182 >gi|290989569|ref|XP_002677410.1| hypothetical protein NAEGRDRAFT_48963 [Naegleria gruberi] gi|284091017|gb|EFC44666.1| hypothetical protein NAEGRDRAFT_48963 [Naegleria gruberi] Length = 1214 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 1/100 (1%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 LE+ IGY F N L H S+ + +YE LEF+GD +L L +S +F++F Sbjct: 1022 NAKELERIIGYKFKNILYAYYTLIHPSVDIGFNVNYETLEFVGDAVLDLYVSRTMFHNFY 1081 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 + + R ++ V ++A++ + + V DL+ Sbjct: 1082 LDQSEMHTFR-SNFVRNTALEKIAKDFRIDQLLFVKKDLK 1120 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 1/88 (1%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N S L A+TH + S + +YER EF GD IL + + F + + Sbjct: 853 NLSELRNAITHRT-SQNLDTNYERYEFFGDTILKYAVVLDIVLRFPFENMKFYNEEKTAK 911 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKD 106 VS ++A++L + F + + Sbjct: 912 VSNSNLRKLAQKLSIMDFFIETQYYHHN 939 >gi|145301789|gb|ABP52434.1| double-stranded RNA-binding protein [Vaccinia virus] Length = 189 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + AD + +I Sbjct: 56 YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 115 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 116 NPVTVINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 173 Query: 216 AAEVLKRE 223 A + + Sbjct: 174 AKLAVDKL 181 >gi|156540328|ref|XP_001599266.1| PREDICTED: similar to adenosine deaminase, partial [Nasonia vitripennis] Length = 429 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 YKV ++GP H P FT+ V+I G + +G +K+ A+ AA L+ Sbjct: 184 YKVVSQTGPTHAPIFTIAVQIDGQSY-EGKGRTKKMAKHAAAELALRNI 231 >gi|217077865|ref|YP_002335583.1| ribonuclease III [Thermosipho africanus TCF52B] gi|217037720|gb|ACJ76242.1| ribonuclease III [Thermosipho africanus TCF52B] Length = 159 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 62/154 (40%), Gaps = 1/154 (0%) Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 ++ ++ S + ++ R++ L ++I + K + SI ADVVE+L+AA+Y+D Sbjct: 1 MAQIKAAVASEDILYEIGRDIGLENYIFLGKGELKSGGKYKKSIIADVVEALVAAIYVDC 60 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 ++ + + F + + + + + + F Sbjct: 61 KKDLNVLENVFHDTFKRYIEIFFSGKRIFDYKTKLQEITQDRFKQLPVYDTVSQKNK-FI 119 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + I G ++ SK+ +E++AA ++ Sbjct: 120 TTLYIDGKIYSKAEGFSKKESEKLAAKIAYEKLK 153 >gi|77434241|gb|ABA82144.1| double-stranded RNA-binding protein [Vaccinia virus] gi|77434344|gb|ABA82147.1| double-stranded RNA-binding protein [Vaccinia virus] Length = 179 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + AD + +I Sbjct: 51 YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 110 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 111 NPVTIINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 168 Query: 216 AAEVLKRE 223 A + + Sbjct: 169 AKLAVDKL 176 >gi|55140600|gb|AAV41839.1| putative double-stranded RNA binding protein [Cantagalo virus] Length = 190 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + AD + +I Sbjct: 57 YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 117 NPVTIINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174 Query: 216 AAEVLKRE 223 A + + Sbjct: 175 AKLAVDKL 182 >gi|56713422|gb|AAW23462.1| double-stranded RNA-specific adenosine [Vaccinia virus] gi|56713706|gb|AAW23744.1| double-stranded RNA-specific adenosine [Vaccinia virus] Length = 190 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 33/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + ADV+ I Sbjct: 57 YSSDDIPPRWFMTTEADKPDADVMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 117 NPVTVINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174 Query: 216 AAEVLKRE 223 A + + Sbjct: 175 AKLAVDKL 182 >gi|225543243|ref|NP_001139363.1| dsRNA-activated protein kinase R [Oncorhynchus mykiss] gi|155573866|gb|ABU24345.1| dsRNA-activated protein kinase R [Oncorhynchus mykiss] Length = 758 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + +++ GPDH FT+ V I G A G+ +K+ A+Q AA L Sbjct: 11 FEYAQRQRQISDIKFEEVGTVGPDHLKTFTLRVVIKGHAYPNGVGKNKKEAKQNAAKHAL 70 Score = 35.3 bits (79), Expect = 6.4, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 1/75 (1%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 E ++ +R + L + + +SGP HDP+F Sbjct: 253 EHMNMSSEQNVPERYSFITTEETNFIGILNHYCQKTKRFPDFK-LVEKSGPSHDPQFVYK 311 Query: 193 VEISGLAPAQGMDCS 207 V I G+ + Sbjct: 312 VLIDQREYPNGLGKT 326 >gi|224121666|ref|XP_002318642.1| predicted protein [Populus trichocarpa] gi|222859315|gb|EEE96862.1| predicted protein [Populus trichocarpa] Length = 179 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 4/120 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L+ +IGY F N L +A+THSS S + + L LG ++ +S Sbjct: 37 LDILQNQIGYTFKNIGYLRRAMTHSSFSQE---NNKALSILGSNVIDTSVSMYYLGKDIE 93 Query: 66 AKEGELSVRFNSLVSAETCS-QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +L+ + +T L L +RVS + + S + ++ Sbjct: 94 ISSKDLNRWISENAKVDTSCAVDGMRLGLHRVVRVSPKTNSTAPTVVCSAFRAIFGAIAI 153 >gi|195454350|ref|XP_002074202.1| GK12745 [Drosophila willistoni] gi|194170287|gb|EDW85188.1| GK12745 [Drosophila willistoni] Length = 845 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 1/79 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CS 207 + L E P+Y + +GP H F VEI+G S Sbjct: 764 PQNNQDKHPVCVLNELTSKNKWTPPQYVLQQNTGPAHMRTFLFSVEINGQKYTPSNGCNS 823 Query: 208 KRAAEQVAAAEVLKREGIW 226 K+ A+ AA L+ G+ Sbjct: 824 KKEAKLNAAKLCLQALGLL 842 >gi|224613135|dbj|BAH24240.1| dsRNA-specific ribonuclease RNaseIII [Candidatus Phytoplasma oryzae] Length = 161 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 2/114 (1%) Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 + SI AD E+L A+YLD G K+ + Sbjct: 25 YNYSIIADAFEALFGAIYLDLGYSEVERVFYHIILPCLKKTINIIDFKTK--LQELVQTE 82 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 YK+ G H+ +F + +G+ +K+AAEQ AA + LK Sbjct: 83 KKNICYKIISEKGLAHEKKFLAEAYLENKCLGRGLGKTKKAAEQRAAEKALKNI 136 >gi|54020492|ref|YP_115922.1| ribonuclease III [Mycoplasma hyopneumoniae 232] gi|53987665|gb|AAV27866.1| ribonuclease III [Mycoplasma hyopneumoniae 232] Length = 183 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 5/178 (2%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 LEFLGD ++ +S + EG + + L S + + +++ L +++ + Sbjct: 2 LEFLGDSVINYAVS-KVIYDNFYKNEGNSTQIRSLLTSTSSLANATKKVGLMNYVLLGRG 60 Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 ++AD+ ES AA+ LD G E F+ +Y + + + + Sbjct: 61 A--SEIRENNKLKADIFESFCAAILLDQGFEKLNEFLSEYLYKDVNFDTEKQYKDPKSIF 118 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F + + D F V + G S + AE AA L Sbjct: 119 QEKIQTFSTSNKIHYLHTKLVDG--TFRVDLIWEKKKYGIGYGRSIKEAEFAAATNAL 174 >gi|167412541|gb|ABZ79975.1| double-stranded RNA binding protein [Vaccinia virus GLV-1h68] Length = 190 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + AD + +I Sbjct: 57 YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 117 NPVTVINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174 Query: 216 AAEVLKRE 223 A + + Sbjct: 175 AKLAVDKL 182 >gi|167046030|gb|ABZ10546.1| dicer-like protein D [Placozoa sp. DMJ-2008] Length = 351 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Query: 2 SALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 ++ S+ + + Y F N L A THSS++ +Y+RLE+LGD L L+ ++ Sbjct: 168 EDIQLSSCILRNTDYQFNNFYWLRIAFTHSSVASE---NYQRLEYLGDATLEYLLIEFVY 224 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 G++S + + +T S +A + IR S L+ Sbjct: 225 CRKPYFGPGKISHFKSVMTRNQTFSLIAIAFQFYTHIRCHSKLK 268 >gi|328779214|ref|XP_001121349.2| PREDICTED: probable RISC-loading complex subunit BRAFLDRAFT_242885 [Apis mellifera] Length = 337 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQ+ P+Y+ GP H FT+ E++ L G+ +K+ A+Q AA ++L Sbjct: 114 LQDLCVENNLQDPKYQQISDVGPPHAKIFTIECEVATLKE-IGVAKTKKQAKQEAAKKML 172 Query: 221 KRE 223 + Sbjct: 173 DKL 175 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + + K +TP Y++ G H F V+ L A G+ SK+ A+ Sbjct: 1 MSKTPVSILQEMMVKNKITPNYELIHDGGGSHMNVFAYQVKCDDL-IASGIGRSKKDAKH 59 Query: 214 VAAAEVLKRE 223 AA +L+ Sbjct: 60 EAAKAMLETI 69 >gi|317018626|gb|ADU86891.1| E3L [Vaccinia virus] Length = 179 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + AD + +I Sbjct: 51 YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKSA 110 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 111 NPVTIINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 168 Query: 216 AAEVLKRE 223 A + + Sbjct: 169 AKLAVDKL 176 >gi|167046028|gb|ABZ10545.1| dicer-like protein D [Trichoplax adhaerens] Length = 351 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 2 SALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 ++ S+ + + Y F N L A THSS++ +Y+RLE+LGD IL L+ ++ Sbjct: 168 EDIQLSSCILRNTDYQFNNFYWLRIAFTHSSVASE---NYQRLEYLGDAILEYLLIEFVY 224 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 G++S + + +T S +A + IR S L+ Sbjct: 225 CRKPYFGPGKISHFKSVMTRNQTFSLIAIAFQFYTHIRCHSKLK 268 >gi|195996287|ref|XP_002108012.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens] gi|190588788|gb|EDV28810.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens] Length = 915 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 2 SALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 ++ S+ + + Y F N L A THSS++ +Y+RLE+LGD IL L+ ++ Sbjct: 646 EDIQLSSCILRNTDYQFNNFYWLRIAFTHSSVASE---NYQRLEYLGDAILEYLLIEFVY 702 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 G++S + + +T S +A + IR S L+ Sbjct: 703 CRKPYFGPGKISHFKSVMTRNQTFSLIAIAFQFYTHIRCHSKLK 746 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +ALT S+S ++ERLE LGD L + + F + KEG +S+ VS Sbjct: 471 LLQALT--SLSADDFFNHERLEILGDSYLKFITTADYFFRNPNMKEGAMSLMRAINVSNS 528 Query: 83 TCSQVARELDLASFIRVSS 101 S+ ++ L + + Sbjct: 529 HLSRTSKLKGLTLYQFNTP 547 >gi|149050635|gb|EDM02808.1| rCG61784 [Rattus norvegicus] Length = 513 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 24/61 (39%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V YK +GP HD RFT V I +G SK+ A+ AA ++ Sbjct: 14 NKYSQIHKVKIIYKEISVTGPPHDRRFTFQVIIEEREFPEGEGRSKQEAKNNAAKLAVEI 73 Query: 223 E 223 Sbjct: 74 L 74 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 16/36 (44%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF +I G +K+ A+Q+AA ++ Sbjct: 125 RFICKCKIGQTTYGTGFGANKKEAKQLAAKNAYQKL 160 >gi|88854099|gb|ABD52517.1| double-stranded RNA-specific adenosine deaminase-like protein p25 [Vaccinia virus] Length = 190 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 33/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + ADV+ I Sbjct: 57 YSSDDIPPRWFMTTEADKPDADVMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 117 NPVTVINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174 Query: 216 AAEVLKRE 223 A + + Sbjct: 175 AKLAVDKL 182 >gi|296422379|ref|XP_002840738.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636961|emb|CAZ84929.1| unnamed protein product [Tuber melanosporum] Length = 524 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 68/222 (30%), Gaps = 35/222 (15%) Query: 21 SLLEKALTHSSISHSY--------QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 L ++A TH S Q+ YERLEFLGD L + S +L+N F +EG LS Sbjct: 274 ELRQQAFTHKSFIKGEDAGLPGIEQQHYERLEFLGDSYLQSITSRILYNRFSKLREGPLS 333 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLR-------------KDVCSFMTSIQADVV 119 LV+ S A +R S + AD Sbjct: 334 DMRQQLVANRPLSTYATIYRFHDKVRESKGQNTAAPVALVHNSRGTYKDMGVNKTLADCF 393 Query: 120 ESLIAALYLDGGIEVAGTFVD--------KYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 E+ IAA+ LD V + S + Sbjct: 394 EAYIAAIVLDSPNGVDIAQRWLTELFEPKLKEMETQHASVGPVDKMAKQTLNTIVGGNRA 453 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSK 208 T EY T G + + + V + + G +K Sbjct: 454 TVEYVWTDGEG-GNKGGYWITVYLTGWGFNKREIGSGWGNNK 494 >gi|156717296|ref|NP_001096190.1| adenosine deaminase, RNA-specific, B1 [Xenopus (Silurana) tropicalis] gi|134024214|gb|AAI36175.1| LOC100124739 protein [Xenopus (Silurana) tropicalis] Length = 719 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 114 QYKLISQTGPVHAPVFIMTVEVNGQVF-EGSGPTKKKAKLNAAEKALR 160 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 1/49 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y SG H F + V + +G +K+ A+ AA L Sbjct: 268 YDFVSESGESHAKNFVMSVTVDNETF-EGSGRNKKLAKARAAQSALASL 315 >gi|9506993|ref|NP_062208.1| interferon-induced, double-stranded RNA-activated protein kinase [Rattus norvegicus] gi|81910551|sp|Q63184|E2AK2_RAT RecName: Full=Interferon-induced, double-stranded RNA-activated protein kinase; AltName: Full=Eukaryotic translation initiation factor 2-alpha kinase 2; Short=eIF-2A protein kinase 2; AltName: Full=Interferon-inducible RNA-dependent protein kinase; AltName: Full=Protein kinase RNA-activated; Short=PKR gi|468373|gb|AAA61926.1| RNA-dependent initiation factor-2 kinase [Rattus norvegicus] Length = 513 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 24/61 (39%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V YK +GP HD RFT V I +G SK+ A+ AA ++ Sbjct: 14 NKYSQIHKVKIIYKEISVTGPPHDRRFTFQVIIEEREFPEGEGRSKQEAKNNAAKLAVEI 73 Query: 223 E 223 Sbjct: 74 L 74 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 16/36 (44%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF +I G +K+ A+Q+AA ++ Sbjct: 125 RFICKCKIGQTTYGTGFGANKKEAKQLAAKNAYQKL 160 >gi|94483690|gb|ABF22807.1| double-stranded RNA binding protein [Variola virus] gi|94485708|gb|ABF24815.1| double-stranded RNA binding protein [Variola virus] gi|94487937|gb|ABF27033.1| double-stranded RNA binding protein [Variola virus] Length = 192 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 35/128 (27%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + A + A + + + K + Sbjct: 57 YSSDDIPPRWFMTTEADKPDAMAMTMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWK 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 +A + + GP + P F V+I G + SKR A+ A Sbjct: 117 NANPVTIINEYCQITKRDWSFRIESVGPSNSPTFYACVDIDGRVFNKADGKSKRDAKNNA 176 Query: 216 AAEVLKRE 223 A + + Sbjct: 177 AKLAVDKL 184 >gi|163916108|gb|AAI57422.1| Double stranded RNA activated protein kinase 1 [Xenopus laevis] Length = 578 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 28/53 (52%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + ++K +GP HDPRFT V ++G +G D K+ AE +AA L Sbjct: 20 SYQFKKVESTGPSHDPRFTFQVFVNGEKLGEGQDKKKKGAEYMAAKMALSTLK 72 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 18/61 (29%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + R G H P F I + +K+ A++ AA L Sbjct: 124 HELCQKHTLIVTFLDERHGQPHIPEFFCKAVIGKEEFPKAKGKNKKEAKRKAAHLALISL 183 Query: 224 G 224 Sbjct: 184 K 184 >gi|295132160|ref|YP_003582836.1| ribonuclease III [Zunongwangia profunda SM-A87] gi|294980175|gb|ADF50640.1| putative ribonuclease III [Zunongwangia profunda SM-A87] Length = 197 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 67/173 (38%), Gaps = 2/173 (1%) Query: 34 HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 +YERLEFLGD +LG +I++ L+ EG L+ + +VS + +++ ++L+L Sbjct: 5 SGNPINYERLEFLGDAMLGSVIASHLYQEVPEGDEGYLTKMRSKIVSRKHLNELGKDLNL 64 Query: 94 ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 F++ + + + +I +V ++ V + + G+ Sbjct: 65 IRFVKSNIPNDQFGVNIHGNIFEALVGAIYLDRGYKYCNRFIYNRVIEPYVDIETLEGRV 124 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 ++ Y+V +G D F V + I A+ Sbjct: 125 ISYKSLLIEWCQK--QKKEFNYQVYEDTGRDELKHFAVKLWIDKKVIAKARAT 175 >gi|321448873|gb|EFX61617.1| hypothetical protein DAPPUDRAFT_272455 [Daphnia pulex] Length = 177 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 3/46 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRIL 51 LE + Y+F NR LL+ ALTH S +YERLEFLGD +L Sbjct: 135 IDKLESILNYSFKNRGLLKGALTHRYFS---ALNYERLEFLGDIVL 177 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 1/97 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 E+ GY F + +L +AL + S S + +RLE +GD +L L++ F + + Sbjct: 26 FEEIFGYKFKDEEMLHQALKRPTASLKSSVKKGDRLELVGDAVLDLIMIEECFERHVNYE 85 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 G+LS L +T ++ A E+ + Sbjct: 86 AGQLSGVKCELTCNDTLARKAEEIQPDYPPEKCPKMD 122 >gi|317033008|ref|XP_001394728.2| hypothetical protein ANI_1_2258094 [Aspergillus niger CBS 513.88] Length = 889 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 70/218 (32%), Gaps = 25/218 (11%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E+ +GY F ++SL +++TH S + SY RL FLG +L ++ + L H Sbjct: 606 EELLGYTFTDKSLAVESMTHPSCTGLVQTTSYRRLSFLGASVLEWIVVSYLHRHAQVMNP 665 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 + ++ + + +A + + + + + Sbjct: 666 QRMQSLKSAFTNNTFLTFIAITFHQVREQNHIDVDDEHNVHKNVTTCSIRLWDFLRLHSD 725 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E++ K A+K + + ++ A V + + Sbjct: 726 ALSTELSDFVQKSSEKADAIKHELWEQRFYPWVRLRALGDMRVLSDIIQSIFG------- 778 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL-KREGI 225 V I A +A+ + L ++ GI Sbjct: 779 ---AVFIDSQAT-------------LASCDALAEKLGI 800 >gi|158706450|sp|A2QX45|DCL22_ASPNC RecName: Full=Dicer-like protein 2-2; Includes: RecName: Full=Endoribonuclease dcl2-2; Includes: RecName: Full=ATP-dependent helicase dcl2-2 Length = 1362 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 70/218 (32%), Gaps = 25/218 (11%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E+ +GY F ++SL +++TH S + SY RL FLG +L ++ + L H Sbjct: 1079 EELLGYTFTDKSLAVESMTHPSCTGLVQTTSYRRLSFLGASVLEWIVVSYLHRHAQVMNP 1138 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 + ++ + + +A + + + + + Sbjct: 1139 QRMQSLKSAFTNNTFLTFIAITFHQVREQNHIDVDDEHNVHKNVTTCSIRLWDFLRLHSD 1198 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E++ K A+K + + ++ A V + + Sbjct: 1199 ALSTELSDFVQKSSEKADAIKHELWEQRFYPWVRLRALGDMRVLSDIIQSIFG------- 1251 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL-KREGI 225 V I A +A+ + L ++ GI Sbjct: 1252 ---AVFIDSQAT-------------LASCDALAEKLGI 1273 >gi|134079420|emb|CAK40801.1| unnamed protein product [Aspergillus niger] Length = 1379 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 70/218 (32%), Gaps = 25/218 (11%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 E+ +GY F ++SL +++TH S + SY RL FLG +L ++ + L H Sbjct: 1096 EELLGYTFTDKSLAVESMTHPSCTGLVQTTSYRRLSFLGASVLEWIVVSYLHRHAQVMNP 1155 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 + ++ + + +A + + + + + Sbjct: 1156 QRMQSLKSAFTNNTFLTFIAITFHQVREQNHIDVDDEHNVHKNVTTCSIRLWDFLRLHSD 1215 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E++ K A+K + + ++ A V + + Sbjct: 1216 ALSTELSDFVQKSSEKADAIKHELWEQRFYPWVRLRALGDMRVLSDIIQSIFG------- 1268 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL-KREGI 225 V I A +A+ + L ++ GI Sbjct: 1269 ---AVFIDSQAT-------------LASCDALAEKLGI 1290 >gi|104642088|gb|ABF73314.1| double-stranded RNA-binding protein [Vaccinia virus] Length = 189 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + AD + +I Sbjct: 56 YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKGA 115 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 116 NPVTVINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 173 Query: 216 AAEVLKRE 223 A + + Sbjct: 174 AKLAVDKL 181 >gi|77434212|gb|ABA82143.1| double-stranded RNA-binding protein [Vaccinia virus] gi|77434276|gb|ABA82145.1| double-stranded RNA-binding protein [Vaccinia virus] gi|77434313|gb|ABA82146.1| double-stranded RNA-binding protein [Vaccinia virus] gi|77434422|gb|ABA82148.1| double-stranded RNA-binding protein [Vaccinia virus] gi|82408803|gb|ABB73195.1| double-stranded RNA-binding protein [Vaccinia virus] gi|317018624|gb|ADU86890.1| E3L [Vaccinia virus] Length = 179 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + AD + +I Sbjct: 51 YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKGA 110 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 111 NPVTVINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 168 Query: 216 AAEVLKRE 223 A + + Sbjct: 169 AKLAVDKL 176 >gi|66275856|ref|YP_232941.1| double-stranded RNA binding protein [Vaccinia virus] gi|137622|sp|P21605|VE03_VACCV RecName: Full=Protein E3; AltName: Full=p25 gi|335750|gb|AAB59823.1| ORF2 [Vaccinia virus] gi|29692165|gb|AAO89338.1| double-stranded RNA binding protein [Vaccinia virus WR] Length = 190 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + AD + +I Sbjct: 57 YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKGA 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 117 NPVTVINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174 Query: 216 AAEVLKRE 223 A + + Sbjct: 175 AKLAVDKL 182 >gi|22164648|ref|NP_671561.1| EVM043 [Ectromelia virus] gi|22123789|gb|AAM92347.1|AF523264_43 EVM043 [Ectromelia virus] gi|14488161|emb|CAC42116.1| dsRNA binding protein [Ectromelia virus] Length = 190 Score = 62.3 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 31/128 (24%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + + + I Sbjct: 57 YRSDDIPPRWFITTEADKPDTNTMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWKNA 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + +KR A+ A Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPIFYACVDIDGRVFDKADGKTKRDAKNNA 174 Query: 216 AAEVLKRE 223 A + + Sbjct: 175 AKLAVDKL 182 >gi|438962|gb|AAA60792.1| homolog of vaccinia virus CDS E3L (interferon resistance factor); putative [Variola major virus] gi|94483894|gb|ABF23010.1| double-stranded RNA binding protein [Variola virus] gi|94484097|gb|ABF23212.1| double-stranded RNA binding protein [Variola virus] gi|94484507|gb|ABF23620.1| double-stranded RNA binding protein [Variola virus] gi|94484704|gb|ABF23816.1| double-stranded RNA binding protein [Variola virus] gi|94484902|gb|ABF24013.1| double-stranded RNA binding protein [Variola virus] gi|94485100|gb|ABF24210.1| double-stranded RNA binding protein [Variola virus] gi|94485302|gb|ABF24411.1| double-stranded RNA binding protein [Variola virus] gi|94485505|gb|ABF24613.1| double-stranded RNA binding protein [Variola virus] gi|94485910|gb|ABF25016.1| double-stranded RNA binding protein [Variola virus] gi|94486922|gb|ABF26023.1| double-stranded RNA binding protein [Variola virus] gi|94487328|gb|ABF26427.1| double-stranded RNA binding protein [Variola virus] gi|94487531|gb|ABF26629.1| double-stranded RNA binding protein [Variola virus] gi|94487732|gb|ABF26829.1| double-stranded RNA binding protein [Variola virus] gi|94488539|gb|ABF27632.1| double-stranded RNA binding protein [Variola virus] gi|94488740|gb|ABF27832.1| double-stranded RNA binding protein [Variola virus] gi|94488941|gb|ABF28032.1| double-stranded RNA binding protein [Variola virus] gi|94489141|gb|ABF28231.1| double-stranded RNA binding protein [Variola virus] gi|94489340|gb|ABF28429.1| double-stranded RNA binding protein [Variola virus] gi|94489543|gb|ABF28631.1| double-stranded RNA binding protein [Variola virus] gi|94489742|gb|ABF28829.1| double-stranded RNA binding protein [Variola virus] gi|94489947|gb|ABF29033.1| double-stranded RNA binding protein [Variola virus] gi|109724290|gb|ABG43415.1| double-stranded RNA binding protein [Variola virus] gi|109724492|gb|ABG43616.1| double-stranded RNA binding protein [Variola virus] gi|109724697|gb|ABG43820.1| double-stranded RNA binding protein [Variola virus] gi|109724901|gb|ABG44023.1| double-stranded RNA binding protein [Variola virus] gi|109726326|gb|ABG45441.1| double-stranded RNA binding protein [Variola virus] Length = 192 Score = 61.9 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 35/128 (27%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + A + A + + + K + Sbjct: 57 YSSDDIPPRWFMTTEADKPDAMAMTMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWK 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 +A + + GP + P F V+I G + SKR A+ A Sbjct: 117 NANPVTIINEYCQITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 176 Query: 216 AAEVLKRE 223 A + + Sbjct: 177 AKLAVDKL 184 >gi|116205049|ref|XP_001228335.1| hypothetical protein CHGG_10408 [Chaetomium globosum CBS 148.51] gi|88176536|gb|EAQ84004.1| hypothetical protein CHGG_10408 [Chaetomium globosum CBS 148.51] Length = 1227 Score = 61.9 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE +GY F ++LL +A+TH S + + S +RLEFLGD IL ++ LF D A Sbjct: 1116 QLESLVGYTFTKKALLVEAMTHPSCNGPGIRASLDRLEFLGDAILDYVVVNKLFAISDPA 1175 Query: 67 KEGELSVRFNSLVSAETCSQVARELDL 93 S+ ++ Sbjct: 1176 PLENSSLHLLRTALVNADILGFLVMEW 1202 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 7/94 (7%) Query: 9 LEKRI---GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE R+ G + SL+ A+T +S + YER+EFLGD IL + + Sbjct: 934 LESRLEQTGIT--DLSLIVTAIT-ASAARGPT-DYERIEFLGDSILKFCTTINCSATYLK 989 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 EG LS + +VS + A + L +I Sbjct: 990 FPEGCLSPLKDKIVSNSRLFRAAVDFGLDRYIIH 1023 >gi|320586295|gb|EFW98974.1| nucleolar rnase [Grosmannia clavigera kw1407] Length = 372 Score = 61.9 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 67/245 (27%), Gaps = 56/245 (22%) Query: 26 ALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 ALTH + SYE EFLGD + L S + F G S L+ Sbjct: 104 ALTHQGMVEKNWHRSYEVFEFLGDAFIYHLASEYISQTFPLLSPGRCSQIRERLLRNSNL 163 Query: 85 SQVARELDLASFIRVSSDLRKDVC--------SFMTSIQADVVESLIAALYLDGGIEVAG 136 S + L ++ ++ + + + D+ E+ + AL V Sbjct: 164 SLYSLHYGLDKRAKLPAEFKGEGRDGGSRARLEQRNKMYGDLFEAYVGALIRSDPQGVER 223 Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD---------- 186 R + + +E A + +GP+H Sbjct: 224 AQKWLKRLWALTIEKDIREEYQRRDKERARNPSLES------SATGPEHTSERPPKLKLI 277 Query: 187 ---------------------------PRFTVVVEISG----LAPAQGMDCSKRAAEQVA 215 P F + + + G G SK+ A A Sbjct: 278 DLIGCKLVKIRYEDAPCKPRKCKDTGLPLFVIDLWVDGWGKSECLGHGSGLSKKDAGSNA 337 Query: 216 AAEVL 220 A + L Sbjct: 338 AQQAL 342 >gi|299473645|emb|CBN78039.1| RNAseIII [Ectocarpus siliculosus] Length = 523 Score = 61.9 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 5/136 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFN- 61 +E +GY F +R LL ALTH S + ++ LE+LGD +L L +S+ LF Sbjct: 14 LPAVEHALGYCFGDRRLLLTALTHRSFCNETHTASGDFDELEWLGDSVLQLAVSSWLFRS 73 Query: 62 -HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 G+LS V + C AR+L+L ++R+ + V+ Sbjct: 74 AKGSRRSSGQLSATRQRFVDSHACESFARQLNLLPYLRIGHGQPVGGTKILADCFEAVLG 133 Query: 121 SLIAALYLDGGIEVAG 136 ++ +E Sbjct: 134 AVYVDAGGCSDLEPIH 149 >gi|67937802|gb|AAY83357.1| putative double-stranded RNA binding protein [Vaccinia virus] Length = 190 Score = 61.9 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 33/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + ADV+ I Sbjct: 57 YSSDDIPPRWFMTTEADKPDADVMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWKGA 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 117 NPVTVINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174 Query: 216 AAEVLKRE 223 A + + Sbjct: 175 AKLAVDKL 182 >gi|44971411|gb|AAS49761.1| RPXV048 [Rabbitpox virus] Length = 190 Score = 61.9 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 33/128 (25%), Gaps = 2/128 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R + + ADV+ I Sbjct: 57 YSSDDIPPRWFMTTEADKPDADVMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWKGA 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 117 NPVTVINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174 Query: 216 AAEVLKRE 223 A + + Sbjct: 175 AKLAVDKL 182 >gi|281211700|gb|EFA85862.1| putative RNase III [Polysphondylium pallidum PN500] Length = 1126 Score = 61.9 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 72/202 (35%), Gaps = 26/202 (12%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----------------ESYERLEFLGD 48 + + ++ I Y+ N LL + TH S S Q +R+EFLGD Sbjct: 696 KMESFKRNI-YSINNERLLREVFTHPSTKRSNQTPPVNMKIYKNYKFYEGDNQRIEFLGD 754 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 +L S LF F A EG L+ + + + + ++ ++ +R+ + Sbjct: 755 SVLKFCTSIYLFYKFPEAMEGVLTTKRSEMTNNNYLIEICDMFEMDEVLRLPQNKDDIK- 813 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 +ADVVE+L A+YL E ++ + K + ++ Sbjct: 814 ----KPKADVVEALFGAVYL----ERGMYEAFRFIMKMIFKIDHSKFPEYKCHHQYETPL 865 Query: 169 FGVTPEYKVTFRSGPDHDPRFT 190 V H+ FT Sbjct: 866 NDVQINILFANNIEIKHNCLFT 887 Score = 48.8 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 + L +A+ + S + SY+RLEFLGD L ++ S LF+ F + +EG LS Sbjct: 877 NIEIKHNCLFTEAM---NCSSDPRMSYQRLEFLGDAFLDVVTSDFLFHAFPNEQEGFLSQ 933 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 LV ++ + + ++L+L + F D+ ES++ L LD GIE Sbjct: 934 ARALLVKNDSLACIFQQLNLKDCV---DLSSCPGIVFNQKRMGDLFESVVGCLLLDQGIE 990 Query: 134 VAGTF 138 F Sbjct: 991 KTKDF 995 Score = 38.0 bits (86), Expect = 0.96, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Query: 190 TVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220 VVV+ G A+G +K+ AE+ AA +VL Sbjct: 42 EVVVKYGGKVYRAEGRAKAKKEAERYAARDVL 73 >gi|156396886|ref|XP_001637623.1| predicted protein [Nematostella vectensis] gi|156224737|gb|EDO45560.1| predicted protein [Nematostella vectensis] Length = 332 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 5/122 (4%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 A++ EKRIGY F+N+ L +ALTH+S S + + + F G +L + Sbjct: 190 AVQLQGFEKRIGYEFSNKLYLIQALTHASYSQNSPKHH----FFGHALLAEREGSNKKQV 245 Query: 63 FDSAKEGELSVRFNSLVSA-ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 S L + L + RV S +RK I + Sbjct: 246 VASFATTTFVTLALCLANNLRCVLTRYYSLATYASGRVVSSVRKSSKPIFIKICVSFGQE 305 Query: 122 LI 123 + Sbjct: 306 FM 307 >gi|149031451|gb|EDL86441.1| adenosine deaminase, RNA-specific, B2 [Rattus norvegicus] Length = 746 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 Q K + K L + K +Y++ ++GP H P F V VE++GL Sbjct: 110 HFCKLQLIWKKLSWSMTPKNALVQLHELK--PGLQYRMVSQTGPVHAPVFAVAVEVNGLT 167 Query: 200 PAQGMDCSKRAAEQVAAAEVLK 221 +G +K+ A+ AA LK Sbjct: 168 F-EGTGPTKKKAKMRAAEMALK 188 >gi|18959240|ref|NP_579836.1| double-stranded RNA-specific editase B2 [Rattus norvegicus] gi|33112433|sp|P97616|RED2_RAT RecName: Full=Double-stranded RNA-specific editase B2; AltName: Full=RNA-dependent adenosine deaminase 3; AltName: Full=RNA-editing deaminase 2; AltName: Full=RNA-editing enzyme 2; AltName: Full=dsRNA adenosine deaminase B2 gi|1814270|gb|AAB41862.1| double-stranded RNA specific adenosine deaminase [Rattus norvegicus] Length = 746 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 Q K + K L + K +Y++ ++GP H P F V VE++GL Sbjct: 110 HFCKLQLIWKKLSWSMTPKNALVQLHELK--PGLQYRMVSQTGPVHAPVFAVAVEVNGLT 167 Query: 200 PAQGMDCSKRAAEQVAAAEVLK 221 +G +K+ A+ AA LK Sbjct: 168 F-EGTGPTKKKAKMRAAEMALK 188 >gi|5830605|emb|CAB54644.1| C3L protein [Variola minor virus] gi|94484303|gb|ABF23417.1| double-stranded RNA binding protein [Variola virus] Length = 192 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 24/70 (34%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 ++A + + GP + P F V+I G + SKR A+ Sbjct: 115 WKNANPVTIINEYCQITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKN 174 Query: 214 VAAAEVLKRE 223 AA + + Sbjct: 175 NAAKLAVDKL 184 >gi|73953914|ref|XP_868240.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 5 [Canis familiaris] Length = 148 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 28/90 (31%) Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + + + L K P YK GP H +TV V Sbjct: 18 PWQTFWNEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVY 77 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G G S + AE AA + L++ Sbjct: 78 FKGERIGCGKGPSIQQAEMGAAMDALEKYN 107 >gi|301611383|ref|XP_002935222.1| PREDICTED: double-stranded RNA-specific editase B2-like [Xenopus (Silurana) tropicalis] Length = 731 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y+ ++GP H P F+V VE++GL +G +K+ A+ AA LK Sbjct: 124 PDLQYRFVSQTGPVHAPVFSVAVEVNGLTF-EGTGPTKKKAKMRAAELALK 173 Score = 48.8 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 1/99 (1%) Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G V T ++ + + + ++ Sbjct: 234 SSAYRHGRLVCHTLDLMGHAKQNKHKMASPAEREKNPVVMLNELRPGLRYVCLSETVEKQ 293 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H RF + + + G +G SK+ A+ AA L+ Sbjct: 294 HIKRFVMAMRVDGRTF-EGSGRSKKLAKAQAAQNALQDL 331 >gi|148672021|gb|EDL03968.1| TAR (HIV) RNA binding protein 2, isoform CRA_b [Mus musculus] Length = 277 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 41/136 (30%), Gaps = 2/136 (1%) Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 R+L S S + + A V + Sbjct: 40 QPSTRQLRWPSNTSKGGACWNQPWRTADSSPPEDTPVVAAEAAAPVPSAVLTRSPPMEMQ 99 Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + LQE K PEY VT SGP H FT+ + G Sbjct: 100 PPVSPQQSEC-NPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE-RFIEIGS 157 Query: 205 DCSKRAAEQVAAAEVL 220 SK+ A++ AAA++L Sbjct: 158 GTSKKLAKRNAAAKML 173 >gi|322798617|gb|EFZ20221.1| hypothetical protein SINV_06556 [Solenopsis invicta] Length = 386 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 25 KALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 +A TH S ++ E Y+RLEFLGD IL LI+ ++ + GEL+ ++LV+ T Sbjct: 150 QAFTHPSYTANGLTECYQRLEFLGDAILDFLITCYIYEKCGNLSPGELTDLRSALVNNIT 209 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 + +A L + + ++ Q D Sbjct: 210 FACLAVRYGLHIALLAYAPKLDEIIDRFVKFQED 243 >gi|90660297|gb|ABD97411.1| double-stranded RNA binding protein [Cowpox virus] Length = 194 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 39/130 (30%), Gaps = 2/130 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--F 153 + R + + AD + +A +D D + + K Sbjct: 57 YSSDDIPPRWFMTTEADKPDADAMADSMADSIIDDASREKSMREDHKSFDDVIPAKKIID 116 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 +DA + + GP + P F V+I G + SKR A+ Sbjct: 117 WKDANPVTIINEYCQITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKN 176 Query: 214 VAAAEVLKRE 223 AA + + Sbjct: 177 NAAKLAVDKL 186 >gi|6969701|gb|AAF33913.1| TE3L [Vaccinia virus Tian Tan] Length = 115 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 24/70 (34%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 +DA + + GP + P F V+I G + SKR A+ Sbjct: 38 WKDANPVTIINEYCQITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKN 97 Query: 214 VAAAEVLKRE 223 AA + + Sbjct: 98 NAAKLAVDKL 107 >gi|326330626|ref|ZP_08196930.1| ribonuclease III [Nocardioidaceae bacterium Broad-1] gi|325951467|gb|EGD43503.1| ribonuclease III [Nocardioidaceae bacterium Broad-1] Length = 183 Score = 61.5 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 1/161 (0%) Query: 50 ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 +LG++++ L+ EG+L+ ++V+A ++V + + L I++ Sbjct: 1 MLGVVVTETLYRTHPDLPEGKLAKLRAAVVNARALAEVGQAIGLGQHIKLGRGEEATGGR 60 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAK 168 SI +D VE++I A++L GGIEV+ V + + K+ + A+ Sbjct: 61 EKASIVSDTVEAVIGAVHLSGGIEVSTVLVHRLFDPLIEKASDLGAGLDWKTSLQELAAE 120 Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + V GPDH FT V + G+ SK+ Sbjct: 121 RALGVPEYVITDEGPDHMKTFTAKVRVGDQLYGNGVGRSKK 161 >gi|189241534|ref|XP_969823.2| PREDICTED: similar to adenosine deaminase [Tribolium castaneum] gi|270001017|gb|EEZ97464.1| hypothetical protein TcasGA2_TC011295 [Tribolium castaneum] Length = 580 Score = 61.5 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y + GP H P F V VE+ G G+ SK+ A+ AA E LK Sbjct: 34 YNFIEQRGPSHAPLFKVAVEVDGQTY-YGVGGSKKLAKCKAAEEALK 79 >gi|313679612|ref|YP_004057351.1| double-stranded RNA binding domain protein [Oceanithermus profundus DSM 14977] gi|313152327|gb|ADR36178.1| double-stranded RNA binding domain protein [Oceanithermus profundus DSM 14977] Length = 165 Score = 61.5 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 K+ L + +K P T +G + DP F V ++G A G SKR AE+ Sbjct: 1 MTHPKSALNAYCQSKNLPLP-KFETRGTGTEDDPLFISDVSLNGELLATGQGRSKREAEK 59 Query: 214 VAAAEVLKRE 223 VAA L+ Sbjct: 60 VAAELALELL 69 >gi|72009988|ref|XP_781832.1| PREDICTED: similar to adenosine deaminase [Strongylocentrotus purpuratus] gi|115934907|ref|XP_001189241.1| PREDICTED: similar to adenosine deaminase [Strongylocentrotus purpuratus] Length = 696 Score = 61.5 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 1/103 (0%) Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 S++ + D K ++ K + + + +Y++ Sbjct: 194 SMMKVVLADKTQNSPDVMNMKVDQEPNGSLTKKKEQPSGKNPVMILNELKPGQKYEMQEE 253 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SG H FT+ + I G QG +K+ A+Q AA L Sbjct: 254 SGQSHSKNFTMSLTIDGKNF-QGTGRNKKLAKQRAAQAALIAL 295 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++GP H P F V VE++ +G SK+ A AA LK Sbjct: 103 SQTGPVHAPTFVVSVEVNDQ-LFEGTGRSKKTARMHAAELALK 144 >gi|196007068|ref|XP_002113400.1| hypothetical protein TRIADDRAFT_57522 [Trichoplax adhaerens] gi|190583804|gb|EDV23874.1| hypothetical protein TRIADDRAFT_57522 [Trichoplax adhaerens] Length = 213 Score = 61.5 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 71/190 (37%), Gaps = 7/190 (3%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLIST 57 + ++KR+GY N +LL +ALT S ++ + + +RL+++G + I Sbjct: 19 RVDIENMQKRLGYHIKNINLLLQALTRQSAIRQGIHYASKSNNQRLQWVGSNMFHSGIVY 78 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L+ + + ++ + + E+ + D + I A Sbjct: 79 KLYEKYANNSYISTDYLNKVAINITSNMALVAEIGKRIGLASCVFRGSDEEIITSEILAH 138 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEY 175 +++ ++ LD G + A V + + L + + F+R + + Sbjct: 139 TFLAILGSITLDDGGQKAVHDVIERHWKWFLDNPEESFKRRPSSFHTRMPPRSATMPSRQ 198 Query: 176 KVTFRSGPDH 185 ++ P+H Sbjct: 199 RIRSSDFPNH 208 >gi|47226805|emb|CAG06647.1| unnamed protein product [Tetraodon nigroviridis] Length = 678 Score = 61.5 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 3/89 (3%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 E V ++ + K K L + +YK+ ++GP H P F + Sbjct: 43 EGNNGHVHSKYRPKKRKKVPGPVLPKNALMQLNE--IKPGLQYKLLSQTGPVHAPVFVMS 100 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 VE++G +G +K+ A+ AA + L+ Sbjct: 101 VEVNGQ-LFEGSGPTKKKAKLNAAEKALR 128 >gi|148700329|gb|EDL32276.1| adenosine deaminase, RNA-specific, B2, isoform CRA_a [Mus musculus] Length = 742 Score = 61.5 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++ ++GP H P F V VE++GL +G +K+ A+ AA LK Sbjct: 141 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAEMALK 187 >gi|26337823|dbj|BAC32597.1| unnamed protein product [Mus musculus] Length = 701 Score = 61.5 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++ ++GP H P F V VE++GL +G +K+ A+ AA LK Sbjct: 141 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAEMALK 187 >gi|37590574|gb|AAH59822.1| Adarb2 protein [Mus musculus] Length = 701 Score = 61.5 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++ ++GP H P F V VE++GL +G +K+ A+ AA LK Sbjct: 141 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAEMALK 187 >gi|8699065|gb|AAF78580.1| RNA adenosine deaminase RED2 [Mus musculus] Length = 731 Score = 61.5 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++ ++GP H P F V VE++GL +G +K+ A+ AA LK Sbjct: 131 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAEMALK 177 >gi|7798626|gb|AAF69767.1| double stranded RNA adenosine deaminase RED2 [Takifugu rubripes] Length = 725 Score = 61.5 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++ ++GP H P F++ VE++GL +G +K+ A+ AA LK Sbjct: 115 QYRMVSQTGPVHAPIFSIAVEVNGLTF-EGTGPTKKKAKMRAAELALK 161 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F + V + G +G SK+ A+ AA L+ Sbjct: 286 RSFVMAVRVDGR-IFEGCGRSKKLAKNQAAQCALRAL 321 >gi|8571466|gb|AAF76894.1|AF270495_1 RNA dependent adenosine deaminase 3 [Mus musculus] Length = 745 Score = 61.5 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++ ++GP H P F V VE++GL +G +K+ A+ AA LK Sbjct: 141 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAEMALK 187 >gi|74148073|dbj|BAE22359.1| unnamed protein product [Mus musculus] Length = 745 Score = 61.5 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++ ++GP H P F V VE++GL +G +K+ A+ AA LK Sbjct: 141 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAEMALK 187 >gi|31542106|ref|NP_443209.2| double-stranded RNA-specific editase B2 [Mus musculus] gi|33112435|sp|Q9JI20|RED2_MOUSE RecName: Full=Double-stranded RNA-specific editase B2; AltName: Full=RNA-dependent adenosine deaminase 3; AltName: Full=RNA-editing deaminase 2; AltName: Full=RNA-editing enzyme 2; AltName: Full=dsRNA adenosine deaminase B2 gi|26329549|dbj|BAC28513.1| unnamed protein product [Mus musculus] gi|30851427|gb|AAH52426.1| Adenosine deaminase, RNA-specific, B2 [Mus musculus] gi|74224054|dbj|BAE23882.1| unnamed protein product [Mus musculus] gi|74226553|dbj|BAE23939.1| unnamed protein product [Mus musculus] gi|148700330|gb|EDL32277.1| adenosine deaminase, RNA-specific, B2, isoform CRA_b [Mus musculus] Length = 745 Score = 61.5 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++ ++GP H P F V VE++GL +G +K+ A+ AA LK Sbjct: 141 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAEMALK 187 >gi|317419725|emb|CBN81761.1| Double-stranded RNA-specific editase B2 [Dicentrarchus labrax] Length = 726 Score = 61.5 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++ ++GP H P F++ VE++GL +G +K+ A+ AA LK Sbjct: 112 QYRMVSQTGPVHAPVFSIAVEVNGLTF-EGTGPTKKKAKMRAAELALK 158 Score = 50.7 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE-GIWT 227 F + V + G +G SK+ A+ AA L+ I T Sbjct: 283 RSFVMAVRVDGR-IFEGCGRSKKLAKNQAAQCALQALFNIRT 323 >gi|326670793|ref|XP_687110.5| PREDICTED: double-stranded RNA-specific editase 1-like [Danio rerio] Length = 750 Score = 61.5 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 3/89 (3%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 E ++ + K K L + +YK+ ++GP H P F + Sbjct: 103 EGNNGHSHSKFRPKKRKKTPGPVLPKNALMQLNE--IKPGLQYKLLSQTGPVHAPVFVMT 160 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 VE++G +G +K+ A+ AA + L+ Sbjct: 161 VEVNGQ-LFEGSGPTKKKAKLNAAEKALR 188 >gi|302412697|ref|XP_003004181.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] gi|261356757|gb|EEY19185.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] Length = 1240 Score = 61.5 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAK 67 LE+ I Y F + LL +++TH+S + + ERLEFLGD IL ++ + LF S Sbjct: 937 LEELIDYTFTKKILLIESITHASFTAGHVNGCLERLEFLGDAILDDIVVSHLFPLNLSHD 996 Query: 68 E 68 Sbjct: 997 R 997 Score = 39.1 bits (89), Expect = 0.50, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 F++ SL+ A+ S+ +YERLEFLGD IL L + L Sbjct: 775 NFSDPSLVLTAI--STKGSLEATNYERLEFLGDSILKLCTTVNAAALHGLVSNSRLCR 830 >gi|148230009|ref|NP_001088561.1| adenosine deaminase, RNA-specific, B1 [Xenopus laevis] gi|54648473|gb|AAH84960.1| LOC495438 protein [Xenopus laevis] Length = 699 Score = 61.5 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYKLISQTGPVHAPVFIMTVEVNGQGF-EGSGPTKKKAKLNAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 1/49 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y SG H F + V + +G +K+ A+ AA L Sbjct: 248 YDFVSESGESHAKNFVMSVTVDNETF-EGSGRNKKLAKARAAQSALASL 295 >gi|195108151|ref|XP_001998656.1| GI24090 [Drosophila mojavensis] gi|193915250|gb|EDW14117.1| GI24090 [Drosophila mojavensis] Length = 873 Score = 61.5 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 1/75 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAA 211 + L E P+Y + SGP H F VEI+G +K+ A Sbjct: 796 QDKHPVCVLNELTSKNKWTPPQYTLKDDSGPSHSRMFLFSVEINGQTYTPAQACNNKKEA 855 Query: 212 EQVAAAEVLKREGIW 226 + AA L+ GI Sbjct: 856 KLNAAKLCLRALGIL 870 >gi|318042834|ref|ZP_07974790.1| putative ribonuclease III [Synechococcus sp. CB0101] Length = 242 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 5/186 (2%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALTH+S ++E+LEFLGD +L L S L H GE S LVS Sbjct: 37 EALTHTSA--GLAINHEQLEFLGDAVLRLAASEYLEQHHPELSVGERSALRAQLVSDRWL 94 Query: 85 SQVARELDLASFIRVSS--DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 ++V + ++ +R+ S + + + + + + Sbjct: 95 AEVGEAIGISDALRIGPTAGGDATALSTLRAEATEALIGALYRAFGSLAPVHQWLTPSWE 154 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLAPA 201 RA+ S R + K+ LQEW+ AK P Y+ RS DP RF V + G A Sbjct: 155 RTSRAVLSDPHRGNCKSALQEWSQAKALGLPTYRTKERSKRHGDPQRFHCHVGLEGWISA 214 Query: 202 QGMDCS 207 +G S Sbjct: 215 EGWGGS 220 >gi|74136125|ref|NP_001027924.1| adenosine deaminase ADAR2-a variant [Takifugu rubripes] gi|22506831|gb|AAM97655.1| adenosine deaminase ADAR2-a variant [Takifugu rubripes] Length = 694 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 84 QYKLLSQTGPVHAPVFVMSVEVNGQ-LFEGSGPTKKKAKLNAAEKALR 130 >gi|7798624|gb|AAF69766.1| double-stranded RNA adenosine deaminase RED1A [Takifugu rubripes] Length = 692 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 82 QYKLLSQTGPVHAPVFVMSVEVNGQ-LFEGSGPTKKKAKLNAAEKALR 128 >gi|114600833|ref|XP_001157148.1| PREDICTED: ribonuclease III, nuclear isoform 2 [Pan troglodytes] Length = 1193 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 2/92 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62 + + E+ IG F + LL +A T + +H +R+EFLGD I+ L+ + LF H Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLA 94 F EG L++ +SLV+ T ++VA EL++ Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELEIK 1160 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 926 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + S + A+ E+LI A+YL+G +E A + + Sbjct: 986 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1045 Query: 158 KTELQEWAHAKFGVTPEYKVT 178 LQ E Sbjct: 1046 LHPLQLQEPNTDRQLIETSPV 1066 Score = 43.0 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 842 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 872 >gi|327274458|ref|XP_003221994.1| PREDICTED: double-stranded RNA-specific editase B2-like [Anolis carolinensis] Length = 714 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 Q K + K L + K +YK+ ++GP H P F V VE++GL Sbjct: 82 HFCKLQLIWKKVSWSVTPKNALVQLHELK--PGLQYKMVSQTGPVHAPVFAVAVEVNGLT 139 Query: 200 PAQGMDCSKRAAEQVAAAEVLK 221 +G +K+ A+ AA LK Sbjct: 140 F-EGTGPTKKKAKMRAAELALK 160 >gi|224044691|ref|XP_002193461.1| PREDICTED: similar to adenosine deaminase, RNA-specific, B2 [Taeniopygia guttata] Length = 744 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 Q K + K L + K +YK+ ++GP H P F V VE++GL Sbjct: 109 HFCKLQLIWKKVSWSVTPKNALVQLHELK--PGLQYKMVSQTGPVHAPVFAVAVEVNGLT 166 Query: 200 PAQGMDCSKRAAEQVAAAEVLK 221 +G +K+ A+ AA LK Sbjct: 167 F-EGTGPTKKKAKMRAAELALK 187 >gi|161484666|ref|NP_571685.2| adenosine deaminase, RNA-specific, B1 [Danio rerio] gi|148726053|emb|CAN88439.1| adenosine deaminase, RNA-specific, B1 [Danio rerio] Length = 720 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 110 QYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAAEKALR 156 >gi|148726052|emb|CAN88438.1| adenosine deaminase, RNA-specific, B1 [Danio rerio] Length = 689 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 79 QYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAAEKALR 125 >gi|92097709|gb|AAI15171.1| Adarb1 protein [Danio rerio] Length = 233 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 110 QYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAAEKALR 156 >gi|63101747|gb|AAH95026.1| Adarb1 protein [Danio rerio] Length = 233 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 110 QYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAAEKALR 156 >gi|15593018|gb|AAL02180.1|AF403111_1 adenosine deaminase [Danio rerio] gi|15593024|gb|AAL02182.1|AF403113_1 adenosine deaminase [Danio rerio] Length = 689 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 79 QYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAAEKALR 125 >gi|15593021|gb|AAL02181.1|AF403112_1 adenosine deaminase [Danio rerio] gi|15593015|gb|AAL02179.1| adenosine deaminase [Danio rerio] Length = 720 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 110 QYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAAEKALR 156 >gi|296812107|ref|XP_002846391.1| dicer-like protein 2 [Arthroderma otae CBS 113480] gi|238841647|gb|EEQ31309.1| dicer-like protein 2 [Arthroderma otae CBS 113480] Length = 1437 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S +E I Y+F ++LL +L+H S + +Y+RLEFLGD IL +++ LF Sbjct: 1155 LSKIEPLIDYSFTKKALLATSLSHPS-NPISGMTYQRLEFLGDSILDSIVTRALFRSNKE 1213 Query: 66 AKEGELSVRFNSLVSAETCSQVARE 90 ++ + +LV+A+ + + Sbjct: 1214 IPHQDMHLMRTALVNADYLAFLCMN 1238 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F + L+ A++ SS S +Y+RLEFLGD L L S L EG LS + Sbjct: 980 FKDIQLVLTAISASSAREST--NYQRLEFLGDSALKLHTSMQLLVDHPFWHEGLLSHKKG 1037 Query: 77 SLVSAETCSQVARELDLASFIRVSS 101 ++S + E L FI + Sbjct: 1038 FIISNSRLWKATIETGLDRFILTAC 1062 >gi|301608714|ref|XP_002933926.1| PREDICTED: interferon-induced, double-stranded RNA-activated protein kinase [Xenopus (Silurana) tropicalis] Length = 534 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 23/46 (50%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + G HDP FTV + I +G SK+AAE++AA L Sbjct: 24 ISKEGSPHDPLFTVHLFIKNEMFGEGQGKSKKAAEKIAARIGLAAL 69 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + ++ R GPDH+P+F V E++ +G +K+ A + AA L+ Sbjct: 132 SRNFRDVDRYGPDHEPKFYCVAEVNKREYPEGWGKNKKQARKKAAFLALRLLK 184 >gi|118085593|ref|XP_418563.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 803 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 Q K + K L + K +YK+ ++GP H P F V VE++GL Sbjct: 120 HFCKLQLIWKKVSWSVTPKNALVQLHELK--PGLQYKMVSQTGPVHAPVFAVAVEVNGLT 177 Query: 200 PAQGMDCSKRAAEQVAAAEVLK 221 +G +K+ A+ AA LK Sbjct: 178 F-EGTGPTKKKAKMRAAELALK 198 Score = 35.7 bits (80), Expect = 4.9, Method: Composition-based stats. Identities = 9/85 (10%), Positives = 24/85 (28%), Gaps = 1/85 (1%) Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G + T ++ + +++ + ++ Sbjct: 259 STAYRHGRLLCHTLDLMGHGKQNRHKMASKAESEKNPVVLLNELRSGLRYVCLSETVEKQ 318 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 H F + V + G +G SK+ Sbjct: 319 HIKSFVMAVRVDGRTF-EGSGRSKK 342 >gi|291409122|ref|XP_002720862.1| PREDICTED: adenosine deaminase, RNA-specific, B2-like [Oryctolagus cuniculus] Length = 734 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++ ++GP H P F V VE++GL +G +K+ A+ AA LK Sbjct: 130 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALK 176 >gi|289526478|pdb|2KHX|A Chain A, Drosha Double-Stranded Rna Binding Motif Length = 85 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 24/65 (36%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 L K P YK GP H +TV V G G S + AE AA + Sbjct: 11 CLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 70 Query: 220 LKREG 224 L++ Sbjct: 71 LEKYN 75 >gi|208690891|gb|ACI31221.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Ateles geoffroyi] Length = 552 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 20/45 (44%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP HD RFT V I G + SK+ A AA ++ Sbjct: 32 NSGPPHDRRFTFQVIIDGREFPEAEGRSKKEATNAAAKVAVEILN 76 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E V+ +GP+ F ++ G +K+ A+Q+AA + Sbjct: 116 VNYEPCVSGMNGPEG---FHYKCKVGQKEYGIGTGSTKQEAKQLAAKLAYLQI 165 >gi|307110681|gb|EFN58917.1| hypothetical protein CHLNCDRAFT_140869 [Chlorella variabilis] Length = 171 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 7/140 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE+R+ Y F N L+ AL H S + RL +LGD +LG +S LL+ Sbjct: 20 VKALEQRLNYNFNNTWGLKLALVHPSYGE---LNNARLTWLGDAVLGAAVSDLLYQALPD 76 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT----SIQADVVES 121 A L ++V + C+ AR+L L + V + + E+ Sbjct: 77 ATIAGLHDHRMAIVRRKACAAAARKLGLDRLLVVGKGYEGAEPTMAMLAGERCRRHCFEA 136 Query: 122 LIAALYLDGGIEVAGTFVDK 141 + A+Y D G ++ Sbjct: 137 VWGAIYEDAGFQLGPMKKVY 156 >gi|321456672|gb|EFX67773.1| hypothetical protein DAPPUDRAFT_115150 [Daphnia pulex] Length = 228 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 2/99 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64 +EK IGY F N+ LL +A+THSS ++ ESY E++GDR+LG ++ + + Sbjct: 26 LEEVEKTIGYIFKNKLLLIQAMTHSSYKNNCLTESYNEQEWIGDRVLGFEMAKFVSLNCQ 85 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 S F +L S E + + + I++ + Sbjct: 86 D-TVDAKSATFATLTSNEFWAVLTVRHGIHKHIKLCDNN 123 >gi|82268346|sp|Q4SS66|TRBP2_TETNG RecName: Full=RISC-loading complex subunit tarbp2 gi|47222849|emb|CAF96516.1| unnamed protein product [Tetraodon nigroviridis] Length = 345 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 140 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 198 Query: 216 AAEVLKRE 223 AA++L R Sbjct: 199 AAKMLSRI 206 >gi|241718568|ref|XP_002403965.1| adenosine deaminase acting on RNA (adar)-1, putative [Ixodes scapularis] gi|215505279|gb|EEC14773.1| adenosine deaminase acting on RNA (adar)-1, putative [Ixodes scapularis] Length = 503 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V + + GP H+PRF V + A+ D +K+ A+ AA Sbjct: 19 AFHEFGQMQHVEAKIDIVATDGPPHNPRFKAVAFLDKKPVAEAWDKTKKEAKHQAAELAF 78 Query: 221 KRE 223 ++ Sbjct: 79 RKL 81 >gi|158186641|ref|NP_001103376.1| double-stranded RNA-binding protein Staufen homolog 1 isoform 1 [Mus musculus] gi|123240382|emb|CAM17301.1| staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus] Length = 495 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 126 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 167 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 203 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 261 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 262 AAENMLEILG 271 >gi|123240384|emb|CAM17303.1| staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus] Length = 485 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 120 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 161 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 255 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 256 AAENMLEILG 265 >gi|51896012|gb|AAH82277.1| Stau1 protein [Mus musculus] Length = 576 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 207 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 248 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 284 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 342 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 343 AAENMLEILG 352 >gi|158186639|ref|NP_001103375.1| double-stranded RNA-binding protein Staufen homolog 1 isoform 2 [Mus musculus] gi|14861636|gb|AAK73752.1|AF395842_1 staufen isoform I2 [Mus musculus] gi|12836618|dbj|BAB23736.1| unnamed protein product [Mus musculus] gi|15277960|gb|AAH12959.1| Staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus] gi|123240383|emb|CAM17302.1| staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus] gi|148674544|gb|EDL06491.1| staufen (RNA binding protein) homolog 1 (Drosophila), isoform CRA_a [Mus musculus] Length = 489 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 120 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 161 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 255 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 256 AAENMLEILG 265 >gi|400554|gb|AAA02759.1| double-stranded RNA-binding protein [Vaccinia virus] Length = 190 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 23/70 (32%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + A + + GP + P F V+I G + SKR A+ Sbjct: 113 WKGANPVTVINEYCQITRRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKN 172 Query: 214 VAAAEVLKRE 223 AA + + Sbjct: 173 NAAKLAVDKL 182 >gi|16758178|ref|NP_445888.1| staufen RNA binding protein homolog 1 isoform 1 [Rattus norvegicus] gi|9754866|gb|AAF98119.1|AF227200_1 staufen isoform Stau+I6 [Rattus norvegicus] Length = 495 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 126 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 167 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G +K+ A++ Sbjct: 203 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGAGTNKKVAKRN 261 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 262 AAENMLEILG 271 >gi|158186644|ref|NP_001103377.1| staufen RNA binding protein homolog 1 isoform 2 [Rattus norvegicus] gi|9755163|gb|AAF98177.1|AF290989_1 staufen isoform Stau-I6 [Rattus norvegicus] gi|74353677|gb|AAI01859.1| Stau1 protein [Rattus norvegicus] gi|149042853|gb|EDL96427.1| staufen RNA binding protein homolog 1 (Drosophila) [Rattus norvegicus] Length = 489 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 120 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 161 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G +K+ A++ Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGAGTNKKVAKRN 255 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 256 AAENMLEILG 265 >gi|51859122|gb|AAH81755.1| Stau1 protein [Rattus norvegicus] Length = 554 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 185 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 226 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G +K+ A++ Sbjct: 262 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGAGTNKKVAKRN 320 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 321 AAENMLEILG 330 >gi|74219068|dbj|BAE26678.1| unnamed protein product [Mus musculus] Length = 592 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 223 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 264 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 300 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 358 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 359 AAENMLEILG 368 >gi|74214463|dbj|BAE31085.1| unnamed protein product [Mus musculus] Length = 489 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 120 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 161 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 255 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 256 AAENMLEILG 265 >gi|74204587|dbj|BAE35365.1| unnamed protein product [Mus musculus] Length = 587 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 218 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 259 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 295 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 353 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 354 AAENMLEILG 363 >gi|74198409|dbj|BAE39688.1| unnamed protein product [Mus musculus] Length = 577 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 208 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 249 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 285 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 343 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 344 AAENMLEILG 353 >gi|74199026|dbj|BAE30728.1| unnamed protein product [Mus musculus] gi|74220489|dbj|BAE31464.1| unnamed protein product [Mus musculus] Length = 485 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 120 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 161 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 255 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 256 AAENMLEILG 265 >gi|74198083|dbj|BAE35221.1| unnamed protein product [Mus musculus] Length = 575 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 206 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 247 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 283 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 341 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 342 AAENMLEILG 351 >gi|74145338|dbj|BAE36128.1| unnamed protein product [Mus musculus] Length = 583 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 214 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 255 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 291 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 349 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 350 AAENMLEILG 359 >gi|74137731|dbj|BAE24052.1| unnamed protein product [Mus musculus] Length = 579 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 210 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 251 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 287 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 345 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 346 AAENMLEILG 355 >gi|6755674|ref|NP_035620.1| double-stranded RNA-binding protein Staufen homolog 1 isoform 3 [Mus musculus] gi|9789804|sp|Q9Z108|STAU1_MOUSE RecName: Full=Double-stranded RNA-binding protein Staufen homolog 1 gi|4335945|gb|AAD17529.1| RNA-binding protein staufen [Mus musculus] gi|123240381|emb|CAM17300.1| staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus] gi|148674545|gb|EDL06492.1| staufen (RNA binding protein) homolog 1 (Drosophila), isoform CRA_b [Mus musculus] Length = 487 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H F V + G +G SK+ +++ AA VL++ Sbjct: 120 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 161 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 195 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 253 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 254 AAENMLEILG 263 >gi|126179439|ref|YP_001047404.1| ribonuclease III [Methanoculleus marisnigri JR1] gi|125862233|gb|ABN57422.1| RNAse III [Methanoculleus marisnigri JR1] Length = 154 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 7/149 (4%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFN 61 LE+RI Y+F + LL++AL H S S+ + E + L LGD +L ++ LL Sbjct: 4 DLEERINYSFKQKDLLQRALLHRSRSNEERQKQKICEDQDALRTLGDAVLKTILCDLLMR 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 K + +++ R DL I V R + ++ A+ +E+ Sbjct: 64 SGYETKGEITIKKSTIE-RRPFLAELGRRFDLQDKILVGEGARMQKHNEEPNVIAETLEA 122 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS 150 +I A+YLDGG E A V +++ + Sbjct: 123 IIGAMYLDGGYESAKKAVSGWYEPYREEM 151 >gi|51342212|gb|AAU01256.1| MPXV-WRAIR046 [Monkeypox virus] gi|58220516|gb|AAW67804.1| MPXV-SL-046 [Monkeypox virus] gi|59858852|gb|AAX09147.1| MPXV-COP-046 [Monkeypox virus] gi|68448726|gb|AAY96849.1| double-stranded RNA binding protein [Monkeypox virus] gi|68449329|gb|AAY97449.1| double-stranded RNA binding protein [Monkeypox virus] gi|68449528|gb|AAY97647.1| double-stranded RNA binding protein [Monkeypox virus] Length = 153 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + + + GP + P F V+I G + SKR A+ Sbjct: 75 YWKGVNPVTVINEYCQITRRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAK 134 Query: 213 QVAAAEVLKRE 223 AA + + Sbjct: 135 NNAAKLAVDKL 145 >gi|17974965|ref|NP_536479.1| F3L [Monkeypox virus Zaire-96-I-16] gi|17529832|gb|AAL40510.1|AF380138_52 F3L [Monkeypox virus Zaire-96-I-16] gi|68448928|gb|AAY97050.1| double-stranded RNA binding protein [Monkeypox virus] gi|68449129|gb|AAY97250.1| double-stranded RNA binding protein [Monkeypox virus] gi|300872673|gb|ADK39075.1| double-stranded RNA binding protein [Monkeypox virus] gi|323098461|gb|ADX22699.1| double-stranded RNA binding protein [Monkeypox virus] gi|323098658|gb|ADX22895.1| double-stranded RNA binding protein [Monkeypox virus] Length = 153 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + + + GP + P F V+I G + SKR A+ Sbjct: 75 YWKGVNPVTVINEYCQITRRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAK 134 Query: 213 QVAAAEVLKRE 223 AA + + Sbjct: 135 NNAAKLAVDKL 145 >gi|27357042|gb|AAN86547.1| adenosine deaminase [Takifugu rubripes] Length = 750 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G +GM +K+ A+ AA + L+ Sbjct: 143 QYKLLSQTGPVHAPVFVMTVEVNGQ-IFEGMGPTKKKAKLNAAEKALR 189 >gi|74096351|ref|NP_001027865.1| adenosine deaminase ADAR2-b variant [Takifugu rubripes] gi|7798622|gb|AAF69765.1| double stranded RNA adenosine deaminase RED1B [Takifugu rubripes] gi|22506833|gb|AAM97656.1| adenosine deaminase ADAR2-b variant [Takifugu rubripes] Length = 698 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G +GM +K+ A+ AA + L+ Sbjct: 91 QYKLLSQTGPVHAPVFVMTVEVNGQ-IFEGMGPTKKKAKLNAAEKALR 137 >gi|47220235|emb|CAF99000.1| unnamed protein product [Tetraodon nigroviridis] Length = 810 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G +GM +K+ A+ AA + L+ Sbjct: 192 QYKLLSQTGPVHAPVFVMTVEVNGQ-IFEGMGPTKKKAKLNAAEKALR 238 >gi|156374036|ref|XP_001629615.1| predicted protein [Nematostella vectensis] gi|156216619|gb|EDO37552.1| predicted protein [Nematostella vectensis] Length = 580 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ E+++ + GP HD F V V ++G +G SK+ A+ AA + L+ Sbjct: 1 MQLNEYKPGLEFRLVSQEGPPHDTTFVVAVTVNGQTY-EGKGSSKQRAKHDAAEKALQ 57 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + T +HD F +E++G+ G SK+ A+ VAA + L + Sbjct: 113 MYLNELHPTQIDYQFEEGTSEHDK-FICNIELNGVEF-SGTGTSKKKAKVVAATKALAK 169 >gi|156340926|ref|XP_001620596.1| hypothetical protein NEMVEDRAFT_v1g222935 [Nematostella vectensis] gi|156205720|gb|EDO28496.1| predicted protein [Nematostella vectensis] Length = 171 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ E+++ + GP HD F V V ++G +G SK+ A+ AA + L+ Sbjct: 61 MQLNEYKPGLEFRLVSQEGPPHDTTFVVAVTVNGQTY-EGKGSSKQRAKHDAAEKALQ 117 >gi|290999955|ref|XP_002682545.1| predicted protein [Naegleria gruberi] gi|284096172|gb|EFC49801.1| predicted protein [Naegleria gruberi] Length = 339 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 1/74 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF-TVVVEISGLAPAQGMDCSK 208 ++ Q + V ++ + RF TV V + +G +K Sbjct: 250 MLQYFDPKTQLAQMVRTGEMHEHAHKTVQYKEVSKDEKRFVTVHVYVDNDVIGEGTGQTK 309 Query: 209 RAAEQVAAAEVLKR 222 + AEQ AA + L + Sbjct: 310 KIAEQKAAQDALNK 323 >gi|251764897|sp|B0V3F8|PRKRA_DANRE RecName: Full=Interferon-inducible double stranded RNA-dependent protein kinase activator A homolog gi|169146119|emb|CAQ15451.1| novel protein similar to H.sapiens PRKRA, protein kinase, interferon-inducible double stranded RNA dependent activator (PRKRA, zgc:162619) [Danio rerio] Length = 282 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE A + PEY V +GP H FT+ + GL G SK+ A + A Sbjct: 99 NPVGILQELAMQRVWCLPEYVVFMETGPGHMKEFTIACRLEGLEE-TGSGSSKKLARRAA 157 Query: 216 AAEVLKRE 223 A ++ + Sbjct: 158 AENMIAKL 165 >gi|169146118|emb|CAQ15450.1| novel protein similar to H.sapiens PRKRA, protein kinase, interferon-inducible double stranded RNA dependent activator (PRKRA, zgc:162619) [Danio rerio] Length = 300 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE A + PEY V +GP H FT+ + GL G SK+ A + A Sbjct: 117 NPVGILQELAMQRVWCLPEYVVFMETGPGHMKEFTIACRLEGLEE-TGSGSSKKLARRAA 175 Query: 216 AAEVLKRE 223 A ++ + Sbjct: 176 AENMIAKL 183 >gi|148985144|ref|ZP_01818383.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71] gi|147922589|gb|EDK73707.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71] Length = 79 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56 M L+ + L+ FA+++LLE A TH+S ++ ++ ERLEFLGD +L LLIS Sbjct: 1 MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59 Query: 57 TLLFNH 62 L+ + Sbjct: 60 EYLYKN 65 >gi|148235737|ref|NP_001082830.1| interferon-inducible double stranded RNA-dependent protein kinase activator A [Danio rerio] gi|134025033|gb|AAI35035.1| Zgc:162619 protein [Danio rerio] Length = 282 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE A + PEY V +GP H FT+ + GL G SK+ A + A Sbjct: 99 NPVGILQELAMQRVWCLPEYVVFMETGPGHMKEFTIACRLEGLEE-TGSGSSKKLARRAA 157 Query: 216 AAEVLKRE 223 A ++ + Sbjct: 158 AENMIAKL 165 >gi|126341352|ref|XP_001373773.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 727 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F V VE++G +G +K+ A+ AA LK Sbjct: 123 QYKMVSQTGPVHAPVFAVAVEVNGFTF-EGTGPTKKKAKMRAAELALK 169 Score = 36.1 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 1/25 (4%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 H F + V + G +G SK+ Sbjct: 290 HAKSFVMAVRVDGRTF-EGSGRSKK 313 >gi|12045228|ref|NP_073039.1| ribonuclease III [Mycoplasma genitalium G37] gi|1350804|sp|P47607|RNC_MYCGE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|3844954|gb|AAC71594.1| ribonuclease III [Mycoplasma genitalium G37] gi|166078923|gb|ABY79541.1| ribonuclease III [synthetic Mycoplasma genitalium JCVI-1.0] Length = 262 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 3/103 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 + +T K + N EKA H+S + +++ SY+RLEFLGD ++ +++ LF Sbjct: 17 KLATFLKNLDIFPNNWEFFEKAFIHASYINEHEDVSESYDRLEFLGDALIDFVVAKKLFE 76 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 + EG L+ +V E +++ EL L F+++S+ Sbjct: 77 LYPKYNEGLLTRTKIEIVKGENLNRIGMELKLGDFVKLSNGAE 119 >gi|169858496|ref|XP_001835893.1| hypothetical protein CC1G_02981 [Coprinopsis cinerea okayama7#130] gi|116503063|gb|EAU85958.1| hypothetical protein CC1G_02981 [Coprinopsis cinerea okayama7#130] Length = 299 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 A +SGP H P + V ++G +G S++ A++ AA + Sbjct: 235 MNQKAAQNGVHVTYPAEQSGPPHAPLWHVRCCLNGKEYGRGTGRSQKIAKEEAARQAWTA 294 Query: 223 EG 224 G Sbjct: 295 MG 296 Score = 35.7 bits (80), Expect = 4.8, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 9/128 (7%) Query: 19 NRSLLEKALTHSSISHSYQESYE------RLEFLGDRILGLLISTLLFNHFDSA-KEGEL 71 + LL TH S+ + E RL LG +L ++++T F+ + + +L Sbjct: 13 DVELLLDVFTHKSLRMTGAPLNEDYGDTDRLAELGAYVLQMVVATHWFHAKNPSLPADQL 72 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRK--DVCSFMTSIQADVVESLIAALYLD 129 S R +S T L + +R++ + S + + + Sbjct: 73 SARIKESLSDTTVDTWMNAYGLKTKLRIAPSEMERSMNSSTEMRKVFETYVGAVYFRNRN 132 Query: 130 GGIEVAGT 137 G E+ Sbjct: 133 GLKEIQQW 140 >gi|291222217|ref|XP_002731114.1| PREDICTED: Double-stranded RNA-binding protein Staufen homolog 2-like [Saccoglossus kowalevskii] Length = 668 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 1/78 (1%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + L P+YK+ SGP H F V + ++ S Sbjct: 66 QNMANPKEKTPMCLLNELARYNKTQPQYKLQDESGPAHQKTFNVSLTLNNQVY-DASGSS 124 Query: 208 KRAAEQVAAAEVLKREGI 225 + A+ AA L++ G+ Sbjct: 125 IKKAQHAAAEIALQKCGL 142 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P + + G F + V I G G+ +K+ A++ Sbjct: 381 MNPVSRLVQIQQAKKEKEPVFTLLQERGQPRKREFIMQVTI-GSNQCTGIGPNKKMAKRA 439 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 440 AAEAMLQLLG 449 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + + + ++V SGP H F I G A+ K+ +++ AAA+VL+ Sbjct: 285 CYESAHRRNLPISFEVINESGPPHMKTFITRCTI-GEYSAEAEGNGKKVSKKRAAAKVLE 343 Query: 222 REGIW 226 + + Sbjct: 344 QLKVL 348 >gi|1932815|gb|AAB51688.1| dsRNA adenosine deaminase [Xenopus laevis] Length = 1124 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 39/124 (31%) Query: 100 SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT 159 + + ++ +A + G E + R K + Sbjct: 371 FENGKWASDDIPEAMNTMNTADALAVTQEELGKEYPQAYEPVKELSRLDKLLACQEKNPV 430 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 ++ + +SGP HDPRF + I G SK+ A++ AA+ Sbjct: 431 SGLLEFTHYCSQQCDFVLLNQSGPSHDPRFKIQAVIDGRHFPVAEASSKKTAKKDAASLA 490 Query: 220 LKRE 223 L+ Sbjct: 491 LRIL 494 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + K G E+++ + GP HDP+FT V+I + SK+ A+ Sbjct: 529 PCNKNPISVLMEHGQKSGSMCEFQLVQQEGPPHDPKFTYTVKIGNQTFPPVVANSKKMAK 588 Query: 213 QVAAAEVLKRE 223 Q+AA ++ Sbjct: 589 QLAAEAAVREL 599 >gi|327282012|ref|XP_003225738.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A-like [Anolis carolinensis] Length = 329 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 1/139 (0%) Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 C A E+ + F + S + + AAL + G V V + Sbjct: 73 CENAAGEVHMPIFTYKVTLGNVTGTGEGPSKKIAKHRAAEAALNIMKGNSVVCIAVPDHL 132 Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 A+ + + + LQE A K PEY + +GP H FTV I G Sbjct: 133 IPGAVNQAQNKTNPVGSLQELAIQKGWKLPEYSMAQETGPPHKREFTVTCRIE-AFVETG 191 Query: 204 MDCSKRAAEQVAAAEVLKR 222 M SK+ A++ AA ++L++ Sbjct: 192 MGTSKKLAKRNAAEKLLRK 210 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 33/116 (28%), Gaps = 1/116 (0%) Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW 164 I ++ L + + W + +L Sbjct: 1 MCHLVCCCHIVTSLIYHLYFSPNSKNPLAGCSRTKSLMWCRLEEIVASKPGKTPIQLLHE 60 Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 K + P Y+ +G H P FT V + G G SK+ A+ AA L Sbjct: 61 YGTKANLNPIYECENAAGEVHMPIFTYKVTL-GNVTGTGEGPSKKIAKHRAAEAAL 115 >gi|327264051|ref|XP_003216830.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 2 [Anolis carolinensis] Length = 890 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + A E Sbjct: 324 AFGQLHKVLGMDPLPSKMPKKPKNENPIDYTVQIPPSTTYAIAPLKRPMEEDGEEKSPSK 383 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G+ + Sbjct: 384 KKKKIQKKEEKAEPPQAMNALMKLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGITY-E 442 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 443 ASGPSKKTAKLHVAVKVLQDMGLPT 467 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 543 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 571 >gi|327264049|ref|XP_003216829.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 1 [Anolis carolinensis] Length = 835 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + A E Sbjct: 324 AFGQLHKVLGMDPLPSKMPKKPKNENPIDYTVQIPPSTTYAIAPLKRPMEEDGEEKSPSK 383 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G+ + Sbjct: 384 KKKKIQKKEEKAEPPQAMNALMKLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGITY-E 442 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 443 ASGPSKKTAKLHVAVKVLQDMGLPT 467 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 543 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 571 >gi|321463534|gb|EFX74549.1| hypothetical protein DAPPUDRAFT_324210 [Daphnia pulex] Length = 694 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 2/100 (2%) Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 I + D E Q + ++ L + P+Y++T SG Sbjct: 62 IGCIEKDNQCESTDDTDFSMGLQDKSEQTGKKKTPM-CLVNELARHHKIQPQYRLTEESG 120 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P H F V +++ S + A+ AA LK+ Sbjct: 121 PAHQKTFVVNLKLGEEQY-SATGQSIKKAQHAAAELALKK 159 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 67/221 (30%), Gaps = 5/221 (2%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + + L ++ + +L ++ S E + GD L + F + Sbjct: 187 VELNALAMKLNFQPVYTNLAPLSI--KSKMQEDSEQSPVCK--GDFRLNQVDQNERFLNA 242 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 D ++ + + S + + + + V QA + Sbjct: 243 DFQRQHTHTSQRFPSSSNQRYYFNRYQQAPVTHRVTLAVGHVFVTGEGLQPQAARHHAAQ 302 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AL G + + + + L K +T E+ V SGP Sbjct: 303 QALEQLRGQTLIDKVQLDEAAVISEANTDSDLKSPVSLVHELALKLNLTVEFTVLNESGP 362 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H F V ++ G QG K+ A++ AA ++ Sbjct: 363 PHMRNFIVQCKL-GEVTTQGEGNCKKVAKRKAAEIMIDELK 402 >gi|312079805|ref|XP_003142331.1| hypothetical protein LOAG_06747 [Loa loa] gi|307762503|gb|EFO21737.1| hypothetical protein LOAG_06747 [Loa loa] Length = 215 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 30/94 (31%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 G + + + + + EYK+ SGP H Sbjct: 24 MWWGQSFTEQEVSPTKYVYNYSQMDENHQRTPMCRIAELARYNKIRHEYKLMDESGPAHK 83 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +FTV + ++ G S + A+Q AA L Sbjct: 84 KQFTVSLVLTPDQVFYGKGASIKKAQQSAAETAL 117 >gi|72157362|ref|XP_797998.1| PREDICTED: similar to MGC53736 protein [Strongylocentrotus purpuratus] gi|115963208|ref|XP_001187016.1| PREDICTED: similar to MGC53736 protein [Strongylocentrotus purpuratus] Length = 306 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 VTP Y + G H P+FT+ +G G SK+ A+Q AA +VL++ I Sbjct: 20 VTPVYDTIGQEGASHQPKFTIRCT-AGDVVGNGQGPSKKVAKQSAAEDVLQQLDI 73 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + ELQE PEY+ SGP H+ RF + V + QG+D SKR A++ Sbjct: 90 DNPVGELQELVTCMGWRKPEYEALEESGPPHNRRFVISVSVD-KYKEQGVDQSKRLAKRA 148 Query: 215 AAAEVLKRE 223 AA+ +L+ Sbjct: 149 AASAMLEVL 157 >gi|229025290|ref|ZP_04181710.1| Ribonuclease 3 [Bacillus cereus AH1272] gi|228736043|gb|EEL86618.1| Ribonuclease 3 [Bacillus cereus AH1272] Length = 163 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 1/145 (0%) Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 EGEL+ ++V + + A EL S + + ++ ADV E+ I A Sbjct: 1 MSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGA 60 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 LYLD G+E F+ + + + D K++LQE EY++ GP Sbjct: 61 LYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKGPA 120 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 H+ F V ++ +A G SK+ Sbjct: 121 HNREFVSRVTLNNVALGLGSGKSKK 145 >gi|255660287|ref|ZP_05405696.1| ribonuclease III [Mycoplasma genitalium G37] Length = 271 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 3/103 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61 + +T K + N EKA H+S + +++ SY+RLEFLGD ++ +++ LF Sbjct: 26 KLATFLKNLDIFPNNWEFFEKAFIHASYINEHEDVSESYDRLEFLGDALIDFVVAKKLFE 85 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 + EG L+ +V E +++ EL L F+++S+ Sbjct: 86 LYPKYNEGLLTRTKIEIVKGENLNRIGMELKLGDFVKLSNGAE 128 >gi|108802827|gb|ABG21364.1| eukaryotic translation initiation factor 2 alpha kinase 2 [Mesocricetus auratus] Length = 473 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 27/62 (43%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 H K VT YK F +GP HD RFT V I G + +K+ A+ AA + Sbjct: 14 NKYHQKHRVTITYKHLFTTGPPHDRRFTFQVIIDGEEFPEAEGKTKQEAKNAAAKLAVDT 73 Query: 223 EG 224 Sbjct: 74 LN 75 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 16/37 (43%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF I G +K+ A+Q+AA E ++ Sbjct: 122 QRFCYKCIIGLKTYGIGSGATKQEAKQLAAKEAYQKL 158 >gi|307108113|gb|EFN56354.1| hypothetical protein CHLNCDRAFT_144841 [Chlorella variabilis] Length = 229 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 3/139 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 S R L++R+GY F+N LL AL HSS + + ++GD + L+++ + Sbjct: 61 SKERIHELQERLGYRFSNLYLLRLALIHSSAA--PTTHNSIMAWIGDAAMYLVVAEEVAA 118 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV-CSFMTSIQADVVE 120 A G+LS +L+ C + A L L+ ++ + +R +++ A++ E Sbjct: 119 ALGYAPIGQLSEVRKTLIGRAMCEKYAAHLGLSEYLVLGKSVRIQNAGVASSNMLAELFE 178 Query: 121 SLIAALYLDGGIEVAGTFV 139 +++ A+YLDG ++ Sbjct: 179 AVMGAVYLDGDLDAVRRCY 197 >gi|327263959|ref|XP_003216784.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Anolis carolinensis] Length = 383 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 179 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 237 Query: 216 AAEVLKRE 223 AA++L R Sbjct: 238 AAKMLVRI 245 >gi|302661784|ref|XP_003022555.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517] gi|291186507|gb|EFE41937.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517] Length = 1468 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S +E I Y+F ++LL +L+H S + +Y+RLEFLGD IL +++ LF Sbjct: 1186 LSKIEPLIDYSFTKKALLAASLSHPS-NPISGMTYQRLEFLGDSILDNIVTRALFRCKRE 1244 Query: 66 AKEGELSVRFNSLVSAETCSQVARE 90 ++ + +LV+A+ + + Sbjct: 1245 IPHQDMHLIRTALVNADFLAFLCMN 1269 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F N L+ A+T +S +Y+RLEFLGD L L S L EG LS + + Sbjct: 1011 FQNIQLVLTAITATSAREDT--NYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKD 1068 Query: 77 SLVSAETCSQVARELDLASFIRVSS 101 S+VS + A + L FI + Sbjct: 1069 SIVSNSRLWKAAVDTGLDQFILTTC 1093 >gi|156387816|ref|XP_001634398.1| predicted protein [Nematostella vectensis] gi|156221481|gb|EDO42335.1| predicted protein [Nematostella vectensis] Length = 118 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + G+ +++ G H+ FT+ + +G G SK+ A+Q AA+ L++ Sbjct: 45 QMGIKVDFEQVSAVGMPHNQTFTINCK-AGDFTGIGTGPSKKKAKQNAASATLEKIK 100 >gi|326921558|ref|XP_003207024.1| PREDICTED: double-stranded RNA-specific editase B2-like [Meleagris gallopavo] Length = 720 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 Q K + K L + K +YK+ ++GP H P F V VE++GL Sbjct: 84 HFCKLQLIWKKVSWSVTPKNALVQLHELK--PGLQYKMVSQTGPVHAPVFAVAVEVNGLT 141 Query: 200 PAQGMDCSKRAAEQVAAAEVLK 221 +G +K+ A+ AA LK Sbjct: 142 F-EGTGPTKKKAKMRAAELALK 162 Score = 36.4 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 9/85 (10%), Positives = 24/85 (28%), Gaps = 1/85 (1%) Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + G + T ++ + +++ + ++ Sbjct: 223 STAYRHGRLLCHTLDLMGHSKQNRHKMACKAESEKNPVVLLNELRSGLRYVCLSETVEKQ 282 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 H F + V + G +G SK+ Sbjct: 283 HIKSFVMAVRVDGRTF-EGSGRSKK 306 >gi|302502160|ref|XP_003013071.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371] gi|291176633|gb|EFE32431.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371] Length = 1490 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S +E I Y+F ++LL +L+H S + +Y+RLEFLGD IL +++ LF Sbjct: 1208 LSKIEPLIDYSFTKKALLAASLSHPS-NPISGMTYQRLEFLGDSILDNIVTRALFRCKKE 1266 Query: 66 AKEGELSVRFNSLVSAETCSQVARE 90 ++ + +LV+A+ + + Sbjct: 1267 IPHQDMHLIRTALVNADFLAFLCMN 1291 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F N L+ A+T +S +Y+RLEFLGD L L S L EG LS + + Sbjct: 1033 FQNIQLVLTAITATSAREDT--NYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKD 1090 Query: 77 SLVSAETCSQVARELDLASFIRVSS 101 S+VS + A + L FI + Sbjct: 1091 SIVSNSRLWKAAVDTGLDQFILTTC 1115 >gi|291241464|ref|XP_002740631.1| PREDICTED: RNA-specific adenosine deaminase B1-like [Saccoglossus kowalevskii] Length = 713 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + ++K +SGP H P F + VE++G +G+ +K+ A+ AA + L+ Sbjct: 99 MQLNEIRPGLQFKFVSQSGPVHAPTFVMSVEVNGQ-MFEGIGTTKKKAKLQAAEKALR 155 Score = 36.4 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 53/208 (25%), Gaps = 13/208 (6%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLG----DRILGLLISTLL 59 ++ + + + + F ++S A + S + + + E +G L L Sbjct: 99 MQLNEIRPGLQFKFVSQSGPVHA---PTFVMSVEVNGQMFEGIGTTKKKAKLQAAEKALR 155 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 +++++ S D+ F S SI + Sbjct: 156 SFVQFPNASEAHRAMGRHIITSDFTSDAMDLSDVCLFNTFESSQMAAGKEIEMSITEQPM 215 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E + + L S ++ L E Sbjct: 216 EEKVQTHNGTHQEIPPAALSTGPTLRTPLSSPPQGKNPIMLLNELRPGLKYE-----FVS 270 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G H F + V I G G + Sbjct: 271 ETGESHAKNFVMSVVIDGQNF-TGSARN 297 >gi|317418804|emb|CBN80842.1| RISC-loading complex subunit tarbp2 [Dicentrarchus labrax] Length = 345 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 140 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGSGTSKKLAKRNA 198 Query: 216 AAEVLKRE 223 AA++L R Sbjct: 199 AAKMLSRI 206 >gi|41053389|ref|NP_956291.1| RISC-loading complex subunit tarbp2 [Danio rerio] gi|82240186|sp|Q7SXR1|TRBP2_DANRE RecName: Full=RISC-loading complex subunit tarbp2 gi|33311802|gb|AAH55390.1| TAR (HIV) RNA binding protein 2 [Danio rerio] Length = 346 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 139 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGSGTSKKLAKRNA 197 Query: 216 AAEVLKRE 223 AA++L R Sbjct: 198 AAKMLSRI 205 >gi|156551920|ref|XP_001607288.1| PREDICTED: similar to GA15248-PA [Nasonia vitripennis] Length = 330 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 77/234 (32%), Gaps = 19/234 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERL-------------EFL--GDRI 50 R+ F + LLE+A H S +E +++ E + G I Sbjct: 66 IYAFNNRLSEQF-DTDLLEQAFIHRSYVIREEEDQKKVGIEDPQLDLTDNREMIDEGREI 124 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + L+I L A + + L+S + A + I + ++ Sbjct: 125 VSLVIDNYLSQSLPLAPQECIYAFKQYLLSTPVLANTASGIGAKDLILSADSPLEEE--T 182 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 + + + +L ++ L+ + + L + L + + Sbjct: 183 IANTFYALTSALNRSVDLEHTGLFVRDILIAQLVAKDLMEIWCPEEPVEILNDILDREHR 242 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 E ++ ++G + P + + V + G + AE++AA L+R Sbjct: 243 ELAEPRIIAQNGVNTLLPVYNIAVYSNQEFLGSGFGETIEEAEKMAAINALQRM 296 >gi|148682396|gb|EDL14343.1| staufen (RNA binding protein) homolog 2 (Drosophila), isoform CRA_a [Mus musculus] Length = 370 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|148682397|gb|EDL14344.1| staufen (RNA binding protein) homolog 2 (Drosophila), isoform CRA_b [Mus musculus] Length = 402 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L + P+YK+ SGP H F+V + + + S + Sbjct: 1 MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59 Query: 210 AAEQVAAAEVL 220 A+Q A + L Sbjct: 60 KAQQAVANKAL 70 >gi|16307507|gb|AAH10300.1| Stau2 protein [Mus musculus] Length = 533 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 269 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 327 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 328 AAEAMLLQLG 337 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 76 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 135 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 136 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 194 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 195 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 236 >gi|162287083|ref|NP_001104742.1| double-stranded RNA-binding protein Staufen homolog 2 isoform 2 [Mus musculus] gi|23507045|gb|AAN37929.1|AF459100_1 double-stranded RNA-binding protein Staufen2 short isoform [Mus musculus] Length = 538 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|19264083|gb|AAH25118.1| Stau2 protein [Mus musculus] Length = 479 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|12853295|dbj|BAB29708.1| unnamed protein product [Mus musculus] Length = 206 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 1 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 59 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 60 AAEAMLLQLG 69 >gi|194018455|ref|NP_079579.2| double-stranded RNA-binding protein Staufen homolog 2 isoform 3 [Mus musculus] gi|73919459|sp|Q8CJ67|STAU2_MOUSE RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2 gi|23507043|gb|AAN37928.1|AF459099_1 double-stranded RNA-binding protein Staufen2 long isoform [Mus musculus] Length = 570 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L + P+YK+ SGP H F+V + + + S + Sbjct: 1 MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59 Query: 210 AAEQVAAAEVL 220 A+Q A + L Sbjct: 60 KAQQAVANKAL 70 >gi|310689634|pdb|2L3J|A Chain A, The Solution Structure Of The Adar2 Dsrbm-Rna Complex Reveals A Sequence-Specific Read Out Of The Minor Groove Length = 236 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 21 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 67 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 176 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 220 >gi|310689632|pdb|2L3C|A Chain A, Solution Structure Of Adar2 Dsrbm1 Bound To Lsl Rna Length = 74 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 21 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 67 >gi|149742267|ref|XP_001489941.1| PREDICTED: similar to RNA-specific adenosine deaminase B1 [Equus caballus] Length = 833 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 226 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 272 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 381 YDFLSESGESHAKNFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 425 >gi|161377407|ref|NP_037026.2| double-stranded RNA-specific editase 1 isoform 1 [Rattus norvegicus] gi|149043657|gb|EDL97108.1| adenosine deaminase, RNA-specific, B1, isoform CRA_b [Rattus norvegicus] Length = 711 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|161377409|ref|NP_001104525.1| double-stranded RNA-specific editase 1 isoform 2 [Rattus norvegicus] gi|149043658|gb|EDL97109.1| adenosine deaminase, RNA-specific, B1, isoform CRA_c [Rattus norvegicus] Length = 701 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|161377411|ref|NP_001104526.1| double-stranded RNA-specific editase 1 isoform 3 [Rattus norvegicus] gi|149043659|gb|EDL97110.1| adenosine deaminase, RNA-specific, B1, isoform CRA_d [Rattus norvegicus] Length = 687 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 70 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 116 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 225 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 269 >gi|161377413|ref|NP_001104527.1| double-stranded RNA-specific editase 1 isoform 4 [Rattus norvegicus] gi|149043660|gb|EDL97111.1| adenosine deaminase, RNA-specific, B1, isoform CRA_e [Rattus norvegicus] Length = 677 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 70 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 116 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 225 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 269 >gi|149043656|gb|EDL97107.1| adenosine deaminase, RNA-specific, B1, isoform CRA_a [Rattus norvegicus] Length = 695 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 88 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 134 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 243 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 287 >gi|148699868|gb|EDL31815.1| adenosine deaminase, RNA-specific, B1, isoform CRA_f [Mus musculus] Length = 707 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 100 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 146 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 255 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 299 >gi|148699867|gb|EDL31814.1| adenosine deaminase, RNA-specific, B1, isoform CRA_e [Mus musculus] Length = 717 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 100 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 146 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 255 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 299 >gi|93278801|pdb|2B7T|A Chain A, Structure Of Adar2 Dsrbm1 Length = 73 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 21 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 67 >gi|13272337|gb|AAK17102.1|AF291049_1 RNA adenosine deaminase 2 [Mus musculus] Length = 701 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|67625743|ref|NP_570965.2| double-stranded RNA-specific editase 1 isoform 1 [Mus musculus] gi|15529488|gb|AAL01301.1|AF403106_1 adenosine deaminase [Mus musculus] gi|148699869|gb|EDL31816.1| adenosine deaminase, RNA-specific, B1, isoform CRA_g [Mus musculus] gi|183396845|gb|AAI65982.1| Adenosine deaminase, RNA-specific, B1 [synthetic construct] Length = 701 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|15529494|gb|AAL01304.1|AF403109_1 adenosine deaminase [Mus musculus] gi|148699864|gb|EDL31811.1| adenosine deaminase, RNA-specific, B1, isoform CRA_b [Mus musculus] Length = 687 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 70 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 116 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 225 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 269 >gi|1657636|gb|AAB18134.1| RNA adenosine deaminase [Homo sapiens] Length = 711 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|15529492|gb|AAL01303.1|AF403108_1 adenosine deaminase [Mus musculus] gi|148699865|gb|EDL31812.1| adenosine deaminase, RNA-specific, B1, isoform CRA_c [Mus musculus] Length = 677 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 70 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 116 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 225 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 269 >gi|21954727|gb|AAM83099.1|AF525421_1 adenosine deaminase ADAR2 [Mus musculus] gi|27357040|gb|AAN86546.1| adenosine deaminase [Mus musculus] gi|148699863|gb|EDL31810.1| adenosine deaminase, RNA-specific, B1, isoform CRA_a [Mus musculus] Length = 695 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 88 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 134 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 243 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 287 >gi|74209845|dbj|BAE23623.1| unnamed protein product [Mus musculus] Length = 376 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|1710075|sp|P51400|RED1_RAT RecName: Full=Double-stranded RNA-specific editase 1; AltName: Full=RNA-editing deaminase 1; AltName: Full=RNA-editing enzyme 1; AltName: Full=dsRNA adenosine deaminase gi|1177853|gb|AAA96755.1| double-stranded RNA-specific editase [Rattus norvegicus] gi|1586827|prf||2204394A RNA-editing enzyme Length = 711 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|67625747|ref|NP_001020008.1| double-stranded RNA-specific editase 1 isoform 2 [Mus musculus] gi|68684375|sp|Q91ZS8|RED1_MOUSE RecName: Full=Double-stranded RNA-specific editase 1; AltName: Full=RNA-editing deaminase 1; AltName: Full=RNA-editing enzyme 1; AltName: Full=dsRNA adenosine deaminase gi|15529490|gb|AAL01302.1|AF403107_1 adenosine deaminase [Mus musculus] gi|74181126|dbj|BAE27830.1| unnamed protein product [Mus musculus] gi|74202480|dbj|BAE24831.1| unnamed protein product [Mus musculus] gi|148699866|gb|EDL31813.1| adenosine deaminase, RNA-specific, B1, isoform CRA_d [Mus musculus] Length = 711 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|302412551|ref|XP_003004108.1| ribonuclease [Verticillium albo-atrum VaMs.102] gi|261356684|gb|EEY19112.1| ribonuclease [Verticillium albo-atrum VaMs.102] Length = 426 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 73/239 (30%), Gaps = 39/239 (16%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 + L TH + +YERLE+LGD ++ S+LLF F G+LS L Sbjct: 162 DPKLETAVFTH--YTVGPGLNYERLEWLGDAYAEIISSSLLFRTFGGFSSGKLSQLRELL 219 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY----LDGGIEV 134 + Q + + L +R +++ + DV ES +AA+ +G Sbjct: 220 ICNANLGQYSAQYGLVDRVRAPEEVKASKEK-WKKVPGDVFESYVAAVILSDPENGLQRA 278 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF-------------------GVTPEY 175 + + + + Sbjct: 279 GEWLKALFSMTIKHQISTISNKPEHRAVLEMGDQSLLPDKVLNAKVRLGQLIGAKGISLR 338 Query: 176 KVTFRSGPDHDPRFT-------VVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222 SGP D F V + + G +G D +K+ A Q AA L Sbjct: 339 YEDDISGPKFDK-FNKRLTVHGVNLYLDGWGEKNKWLGKGTDINKKEAGQKAAQMALDN 396 >gi|164657402|ref|XP_001729827.1| hypothetical protein MGL_2813 [Malassezia globosa CBS 7966] gi|159103721|gb|EDP42613.1| hypothetical protein MGL_2813 [Malassezia globosa CBS 7966] Length = 388 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 64/242 (26%), Gaps = 39/242 (16%) Query: 21 SLLEKALTHSSIS----------------------HSYQESYERLEFLGDRILGLLISTL 58 +LL A TH S+ + +L +G+ +LGLL S Sbjct: 88 ALLRVACTHPSVLSVQQTASSLPMSLQERQQVRELQETIQHNAQLSTIGNSLLGLLTSEY 147 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL--ASFIRVSSDLRKDVCSFMTSIQA 116 + L ++ T + V EL + R + Sbjct: 148 FHLKYPHLPTRVLKAFVSAYAGPSTLADVGAELGVLAQGVQRWDRTGASSITRRTPRGGT 207 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--------------RDAKTELQ 162 V L + + + RD K L Sbjct: 208 TSVPLLSKDVAAQSVRAIVAVLFQELGMPAVRGFVHSHLLSRRLDLASLLKFRDPKRVLS 267 Query: 163 EWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P+ ++ +G P F V V + +G S R AE AA + L+ Sbjct: 268 STCKKYGKPAPQSRMLAETGRLSIHPVFVVGVYSGAIQLGEGTGSSIRMAEFRAAEDALR 327 Query: 222 RE 223 R Sbjct: 328 RL 329 >gi|166295185|ref|NP_033345.2| RISC-loading complex subunit TARBP2 [Mus musculus] gi|12805141|gb|AAH02028.1| TAR (HIV) RNA binding protein 2 [Mus musculus] gi|148672020|gb|EDL03967.1| TAR (HIV) RNA binding protein 2, isoform CRA_a [Mus musculus] Length = 365 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 Q + + + LQE K PEY VT SGP H FT+ + Sbjct: 140 RSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE- 198 Query: 198 LAPAQGMDCSKRAAEQVAAAEVL 220 G SK+ A++ AAA++L Sbjct: 199 RFIEIGSGTSKKLAKRNAAAKML 221 >gi|77917582|ref|NP_001030113.1| RISC-loading complex subunit TARBP2 [Rattus norvegicus] gi|123780849|sp|Q3SWU0|TRBP2_RAT RecName: Full=RISC-loading complex subunit TARBP2 gi|74356245|gb|AAI04691.1| TAR (HIV-1) RNA binding protein 2 [Rattus norvegicus] gi|149031914|gb|EDL86826.1| TAR (HIV) RNA binding protein 2 [Rattus norvegicus] Length = 365 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 Q + + + LQE K PEY VT SGP H FT+ + Sbjct: 140 RSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE- 198 Query: 198 LAPAQGMDCSKRAAEQVAAAEVL 220 G SK+ A++ AAA++L Sbjct: 199 RFIEIGSGTSKKLAKRNAAAKML 221 >gi|74188185|dbj|BAE25768.1| unnamed protein product [Mus musculus] Length = 274 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 Q + + + LQE K PEY VT SGP H FT+ + Sbjct: 49 RSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE- 107 Query: 198 LAPAQGMDCSKRAAEQVAAAEVL 220 G SK+ A++ AAA++L Sbjct: 108 RFIEIGSGTSKKLAKRNAAAKML 130 >gi|3334379|sp|P97473|TRBP2_MOUSE RecName: Full=RISC-loading complex subunit TARBP2; AltName: Full=Protamine-1 RNA-binding protein; Short=PRM-1 RNA-binding protein; AltName: Full=TAR RNA-binding protein 2 gi|1737216|gb|AAB38885.1| protamine-1 RNA binding protein [Mus musculus] Length = 365 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 Q + + + LQE K PEY VT SGP H FT+ + Sbjct: 140 RSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE- 198 Query: 198 LAPAQGMDCSKRAAEQVAAAEVL 220 G SK+ A++ AAA++L Sbjct: 199 RFIEIGSGTSKKLAKRNAAAKML 221 >gi|301777794|ref|XP_002924315.1| PREDICTED: double-stranded RNA-specific editase B2-like [Ailuropoda melanoleuca] Length = 1006 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++ ++GP H P F V VE++GL +G +K+ A+ AA L+ Sbjct: 441 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 487 Score = 35.7 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 1/25 (4%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 H F + V + G +G SK+ Sbjct: 569 HAKSFVMAVSVDGRTF-EGSGRSKK 592 >gi|281353109|gb|EFB28693.1| hypothetical protein PANDA_013628 [Ailuropoda melanoleuca] Length = 637 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++ ++GP H P F V VE++GL +G +K+ A+ AA L+ Sbjct: 78 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 124 Score = 35.7 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 1/25 (4%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209 H F + V + G +G SK+ Sbjct: 200 HAKSFVMAVSVDGRTF-EGSGRSKK 223 >gi|194227228|ref|XP_001917073.1| PREDICTED: similar to Double-stranded RNA-specific editase B2 (dsRNA adenosine deaminase B2) (RNA-dependent adenosine deaminase 3) (RNA-editing deaminase 2) (RNA-editing enzyme 2) [Equus caballus] Length = 732 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++ ++GP H P F V VE++GL +G +K+ A+ AA L+ Sbjct: 140 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 186 >gi|149634773|ref|XP_001511395.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 786 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++ ++GP H P F V VE++GL +G +K+ A+ AA L+ Sbjct: 180 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 226 >gi|149060895|gb|EDM11505.1| rCG30397, isoform CRA_a [Rattus norvegicus] Length = 408 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 202 MNPISRLAQIQQARKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 261 AAEAMLLQLG 270 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 9 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 68 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 69 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 127 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 128 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 169 >gi|149060896|gb|EDM11506.1| rCG30397, isoform CRA_b [Rattus norvegicus] gi|149060897|gb|EDM11507.1| rCG30397, isoform CRA_b [Rattus norvegicus] gi|149060898|gb|EDM11508.1| rCG30397, isoform CRA_b [Rattus norvegicus] gi|149060899|gb|EDM11509.1| rCG30397, isoform CRA_b [Rattus norvegicus] Length = 467 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 202 MNPISRLAQIQQARKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 261 AAEAMLLQLG 270 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 9 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 68 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 69 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 127 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 128 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 169 >gi|149060900|gb|EDM11510.1| rCG30397, isoform CRA_c [Rattus norvegicus] Length = 224 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 18 MNPISRLAQIQQARKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 76 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 77 AAEAMLLQLG 86 >gi|55741784|ref|NP_001007151.1| double-stranded RNA-binding protein Staufen homolog 2 isoform SS [Rattus norvegicus] gi|47679379|gb|AAT36670.1| staufen2 spliceform SS [Rattus norvegicus] gi|52001197|gb|AAU21479.1| double-stranded RNA binding protein staufen 2 52 kDa isoform [Rattus norvegicus] Length = 480 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQARKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|47679381|gb|AAT36671.1| staufen2 spliceform SL [Rattus norvegicus] gi|52001195|gb|AAU21478.1| double-stranded RNA binding protein staufen 2 59 kDa isoform [Rattus norvegicus] Length = 539 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQARKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|51592098|ref|NP_604461.2| double-stranded RNA-binding protein Staufen homolog 2 isoform LS (B) [Rattus norvegicus] gi|47679383|gb|AAT36672.1| staufen2 spliceform LS [Rattus norvegicus] gi|55715910|gb|AAH85705.1| Stau2 protein [Rattus norvegicus] Length = 512 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQARKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L + P+YK+ SGP H F+V + + + S + Sbjct: 1 MANPKEKTPMCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59 Query: 210 AAEQVAAAEVL 220 A+Q A + L Sbjct: 60 KAQQAVANKAL 70 >gi|73949198|ref|XP_544281.2| PREDICTED: similar to Double-stranded RNA-specific editase B2 (dsRNA adenosine deaminase B2) (RNA dependent adenosine deaminase 3) (RNA editing deaminase 2) (RNA editing enzyme 2) [Canis familiaris] Length = 784 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++ ++GP H P F V VE++GL +G +K+ A+ AA L+ Sbjct: 188 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 234 Score = 34.9 bits (78), Expect = 9.1, Method: Composition-based stats. Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAE 212 F + V + G +G SK+ A+ Sbjct: 345 AKGFVMAVSVDGRTF-EGSGRSKKLAK 370 >gi|73919460|sp|Q68SB1|STAU2_RAT RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2; Short=r-staufen protein gi|47679385|gb|AAT36673.1| staufen2 spliceform LL [Rattus norvegicus] Length = 571 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQARKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L + P+YK+ SGP H F+V + + + S + Sbjct: 1 MANPKEKTPMCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59 Query: 210 AAEQVAAAEVL 220 A+Q A + L Sbjct: 60 KAQQAVANKAL 70 >gi|332810381|ref|XP_513841.3| PREDICTED: double-stranded RNA-specific adenosine deaminase [Pan troglodytes] Length = 931 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 222 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 270 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 291 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 350 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 351 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 385 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 452 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497 >gi|332220545|ref|XP_003259416.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform 3 [Nomascus leucogenys] Length = 1234 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 570 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 618 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 639 HYSTEKESEKTAESQIPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 698 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 699 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 733 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 781 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 826 >gi|332220543|ref|XP_003259415.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform 2 [Nomascus leucogenys] Length = 1253 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 570 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 618 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 639 HYSTEKESEKTAESQIPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 698 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 699 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 733 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 800 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 845 >gi|332220541|ref|XP_003259414.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform 1 [Nomascus leucogenys] Length = 1279 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 570 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 618 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 639 HYSTEKESEKTAESQIPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 698 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 699 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 733 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 800 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 845 >gi|311254196|ref|XP_003125793.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like, partial [Sus scrofa] Length = 1171 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 488 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 536 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 30/59 (50%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K G + E+++ R GP HDP+F V + SK+AA+Q+AA E +K Sbjct: 593 CVHKLGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQLAAEEAMKAL 651 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 718 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 763 >gi|297663364|ref|XP_002810145.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 4 [Pongo abelii] gi|297663366|ref|XP_002810146.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 5 [Pongo abelii] Length = 931 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 222 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 270 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 291 HYSTEKESEKTAESQIPTPSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 350 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 351 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 385 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 452 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497 >gi|297663362|ref|XP_002810144.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 3 [Pongo abelii] Length = 1181 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 586 HYSTEKESEKTAESQIPTPSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 728 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 773 >gi|297663360|ref|XP_002810143.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 2 [Pongo abelii] Length = 1200 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 586 HYSTEKESEKTAESQIPTPSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792 >gi|297663358|ref|XP_002810142.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 1 [Pongo abelii] Length = 1226 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 586 HYSTEKESEKTAESQIPTPSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792 >gi|297280147|ref|XP_002801844.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 3 [Macaca mulatta] Length = 1180 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 516 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 564 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 585 HYSTEKESEKTTESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 644 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 645 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 679 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 727 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 772 >gi|297280145|ref|XP_001111902.2| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 1 [Macaca mulatta] Length = 1199 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 516 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 564 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 585 HYSTEKESEKTTESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 644 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 645 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 679 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 746 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 791 >gi|297280143|ref|XP_002801843.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like isoform 2 [Macaca mulatta] Length = 1225 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 516 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 564 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 585 HYSTEKESEKTTESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 644 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 645 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 679 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 746 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 791 >gi|221044884|dbj|BAH14119.1| unnamed protein product [Homo sapiens] Length = 970 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792 >gi|194665306|ref|XP_581374.4| PREDICTED: adenosine deaminase, RNA-specific [Bos taurus] gi|297472608|ref|XP_002686059.1| PREDICTED: RNA adenosine deaminase-like [Bos taurus] gi|296489763|gb|DAA31876.1| RNA adenosine deaminase-like [Bos taurus] Length = 1149 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 466 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 514 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 30/59 (50%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K G + E+++ R GP HDP+F V + SK+AA+Q+AA E +K Sbjct: 571 CVHKLGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQMAAEEAMKAL 629 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 696 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 741 >gi|313104303|sp|P55265|DSRAD_HUMAN RecName: Full=Double-stranded RNA-specific adenosine deaminase; Short=DRADA; AltName: Full=136 kDa double-stranded RNA-binding protein; Short=p136; AltName: Full=Interferon-inducible protein 4; Short=IFI-4; AltName: Full=K88DSRBP gi|55666219|emb|CAH71908.1| adenosine deaminase, RNA-specific [Homo sapiens] gi|55960913|emb|CAI16185.1| adenosine deaminase, RNA-specific [Homo sapiens] gi|55961273|emb|CAI17376.1| adenosine deaminase, RNA-specific [Homo sapiens] Length = 1226 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792 >gi|149020494|gb|EDL78299.1| interleukin enhancer binding factor 3, isoform CRA_a [Rattus norvegicus] gi|149020495|gb|EDL78300.1| interleukin enhancer binding factor 3, isoform CRA_a [Rattus norvegicus] gi|149020496|gb|EDL78301.1| interleukin enhancer binding factor 3, isoform CRA_a [Rattus norvegicus] Length = 910 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 339 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 398 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + Sbjct: 399 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSTF-E 457 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 458 ASGPSKKTAKLHVAVKVLQDMGLPT 482 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 557 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 585 >gi|119573573|gb|EAW53188.1| adenosine deaminase, RNA-specific, isoform CRA_e [Homo sapiens] Length = 905 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 222 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 270 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 291 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 350 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 351 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 385 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 452 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497 >gi|119573569|gb|EAW53184.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens] gi|119573574|gb|EAW53189.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens] Length = 886 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 222 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 270 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 291 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 350 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 351 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 385 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 433 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 478 >gi|70166944|ref|NP_056655.2| double-stranded RNA-specific adenosine deaminase isoform b [Homo sapiens] gi|119573575|gb|EAW53190.1| adenosine deaminase, RNA-specific, isoform CRA_f [Homo sapiens] Length = 1200 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792 >gi|70167032|ref|NP_056656.2| double-stranded RNA-specific adenosine deaminase isoform c [Homo sapiens] gi|119573570|gb|EAW53185.1| adenosine deaminase, RNA-specific, isoform CRA_c [Homo sapiens] Length = 1181 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 728 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 773 >gi|62089368|dbj|BAD93128.1| adenosine deaminase, RNA-specific isoform ADAR-a variant [Homo sapiens] Length = 1244 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 535 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 583 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 604 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 663 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 664 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 698 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 765 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 810 >gi|70167113|ref|NP_001020278.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo sapiens] gi|301601658|ref|NP_001180424.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo sapiens] gi|55666218|emb|CAH71907.1| adenosine deaminase, RNA-specific [Homo sapiens] gi|55960911|emb|CAI16183.1| adenosine deaminase, RNA-specific [Homo sapiens] gi|55961272|emb|CAI17375.1| adenosine deaminase, RNA-specific [Homo sapiens] gi|119573568|gb|EAW53183.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens] gi|119573572|gb|EAW53187.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens] Length = 931 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 222 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 270 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 291 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 350 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 351 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 385 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 452 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497 >gi|2795789|gb|AAB97116.1| RNA adenosine deaminase [Homo sapiens] Length = 1200 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792 >gi|2795790|gb|AAB97117.1| RNA adenosine deaminase [Homo sapiens] Length = 1181 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 728 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 773 >gi|16758150|ref|NP_445864.1| interleukin enhancer-binding factor 3 [Rattus norvegicus] gi|6911241|gb|AAF31446.1|AF220102_1 interleukin enhancer binding factor 3 [Rattus norvegicus] Length = 910 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 339 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 398 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + Sbjct: 399 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSTF-E 457 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 458 ASGPSKKTAKLHVAVKVLQDMGLPT 482 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 557 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 585 >gi|70166852|ref|NP_001102.2| double-stranded RNA-specific adenosine deaminase isoform a [Homo sapiens] gi|577170|gb|AAB06697.1| double-stranded RNA adenosine deaminase [Homo sapiens] gi|23398522|gb|AAH38227.1| Adenosine deaminase, RNA-specific [Homo sapiens] gi|119573571|gb|EAW53186.1| adenosine deaminase, RNA-specific, isoform CRA_d [Homo sapiens] gi|157928608|gb|ABW03600.1| adenosine deaminase, RNA-specific [synthetic construct] gi|157929250|gb|ABW03910.1| adenosine deaminase, RNA-specific [synthetic construct] Length = 1226 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792 >gi|915284|gb|AAC13782.1| p136 [Homo sapiens] gi|2795791|gb|AAB97118.1| RNA adenosine deaminase [Homo sapiens] Length = 1226 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792 >gi|34364836|emb|CAE45853.1| hypothetical protein [Homo sapiens] Length = 1278 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 548 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 596 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 617 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 676 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 677 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 711 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 778 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 823 >gi|31874703|emb|CAD98075.1| hypothetical protein [Homo sapiens] Length = 1257 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 548 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 596 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 617 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 676 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 677 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 711 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 778 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 823 >gi|12711291|emb|CAA67170.1| dsRNA adenosine deaminase [Homo sapiens] Length = 1221 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 512 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 560 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 581 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 640 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 641 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 675 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 742 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 787 >gi|2326526|emb|CAA55968.1| IFI-4 [Homo sapiens] Length = 1226 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792 >gi|2326524|emb|CAA55967.1| IFI-4 [Homo sapiens] gi|12711292|emb|CAA67169.1| dsRNA adenosine deaminase [Homo sapiens] Length = 931 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 222 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 270 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E + + F + K G + E+++ + GP H+P+ Sbjct: 291 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 350 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 351 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 385 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 452 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497 >gi|9081981|gb|AAF82685.1|AF202445_1 dsRNA binding protein NFAR-2/MPP4 [Homo sapiens] Length = 709 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 139 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 198 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 199 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 257 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 258 ASGPSKKTAKLHVAVKVLQDMGLPT 282 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 357 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 385 >gi|47227654|emb|CAG09651.1| unnamed protein product [Tetraodon nigroviridis] Length = 850 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 2/133 (1%) Query: 93 LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 R + + + S+ + L + + Q + Sbjct: 443 CQKRFREDAGSDDRDFIKRMKVGLTLTCSVNNSFTLSTSCNLGPSEKHDKRFQPSKILDW 502 Query: 153 FRRDAKTELQE-WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 D + + +Y++ +SGP H P FT+ V++ G Q SKR A Sbjct: 503 RMMDPNHPMNALMRLNQIHPGLQYRLLSQSGPVHAPVFTMSVDVQGNTY-QATGNSKRTA 561 Query: 212 EQVAAAEVLKREG 224 + A + L+ G Sbjct: 562 KLQVALKALQALG 574 >gi|332826415|ref|XP_003311808.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 [Pan troglodytes] Length = 474 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 210 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 268 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 269 AAEAMLLQLG 278 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 132 IKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 177 >gi|332240606|ref|XP_003269478.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 [Nomascus leucogenys] Length = 570 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 173 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L V P+YK+ GP H F+V + + + S + Sbjct: 1 MANPKEKTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59 Query: 210 AAEQVAAAEVL 220 A+Q A + L Sbjct: 60 KAQQAVANKAL 70 >gi|311253723|ref|XP_003125644.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2-like [Sus scrofa] Length = 477 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 327 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 385 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 386 AAEAMLLQLG 395 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 2/195 (1%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 S + S +E E L + L F + L Sbjct: 102 PSFTASTLTRWESSELLEHALPSGASDKALHLVFSPPRRPCSRYLCGLLPHLFQVFMYHC 161 Query: 90 ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 + +++++ + T A ++ A L + + + Sbjct: 162 PIPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSAQNGESGKEMDD 221 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + + + E A + V SGP H F V + G A+G SK+ Sbjct: 222 DKDANKSEISLVFEIALKRNMPVSFE-VIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKK 279 Query: 210 AAEQVAAAEVLKREG 224 +++ AA VL+ Sbjct: 280 LSKKRAATTVLQELK 294 >gi|301782463|ref|XP_002926647.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2-like [Ailuropoda melanoleuca] Length = 576 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|296480591|gb|DAA22706.1| staufen homolog 2 [Bos taurus] Length = 384 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPEKSAQNCESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|296226706|ref|XP_002759046.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform 3 [Callithrix jacchus] Length = 504 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 202 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 261 AAEAMLLQLG 270 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 9 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 68 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 69 MKALQALQNEPIPEKSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 127 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 128 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 169 >gi|296226704|ref|XP_002759045.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform 2 [Callithrix jacchus] Length = 538 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|296226702|ref|XP_002759044.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform 1 [Callithrix jacchus] Length = 570 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L V P+YK+ GP H F+V + + + S + Sbjct: 1 MANPKEKTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59 Query: 210 AAEQVAAAEVL 220 A+Q A + L Sbjct: 60 KAQQAVANKAL 70 >gi|291388131|ref|XP_002710684.1| PREDICTED: staufen homolog 2 isoform 2 [Oryctolagus cuniculus] Length = 504 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 202 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 261 AAEAMLLQLG 270 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 9 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 68 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 69 MKALQALQNEPIPEKSPQNGESGKEVDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 127 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 128 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 169 >gi|291388129|ref|XP_002710683.1| PREDICTED: staufen homolog 2 isoform 1 [Oryctolagus cuniculus] Length = 570 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKEVDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L V P+YK+ SGP H F+V + + + S + Sbjct: 1 MANPKEKTPMCLVNELARFNRVQPQYKLLNESGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59 Query: 210 AAEQVAAAEVL 220 A+Q A + L Sbjct: 60 KAQQAVANKAL 70 >gi|281337840|gb|EFB13424.1| hypothetical protein PANDA_016331 [Ailuropoda melanoleuca] Length = 510 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L V P+YK+ GP H F+V + + + S + Sbjct: 1 MANPKEKTPMCLVNELARFNRVQPQYKLLKERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59 Query: 210 AAEQVAAAEVL 220 A+Q A + L Sbjct: 60 KAQQAVANKAL 70 >gi|256419005|ref|NP_001157857.1| double-stranded RNA-binding protein Staufen homolog 2 isoform f [Homo sapiens] Length = 473 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 268 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 326 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 327 AAEAMLLQLG 336 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 75 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 134 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 135 MKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 194 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 235 >gi|256419001|ref|NP_001157855.1| double-stranded RNA-binding protein Staufen homolog 2 isoform d [Homo sapiens] Length = 398 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 134 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 192 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 193 AAEAMLLQLG 202 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 56 IKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 101 >gi|256418999|ref|NP_001157854.1| double-stranded RNA-binding protein Staufen homolog 2 isoform c [Homo sapiens] Length = 504 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 202 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 261 AAEAMLLQLG 270 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 9 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 68 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 69 MKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 127 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 128 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 169 >gi|256418997|ref|NP_001157853.1| double-stranded RNA-binding protein Staufen homolog 2 isoform b [Homo sapiens] Length = 538 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|256418995|ref|NP_001157852.1| double-stranded RNA-binding protein Staufen homolog 2 isoform a [Homo sapiens] Length = 570 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 173 MKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L V P+YK+ GP H F+V + + + S + Sbjct: 1 MANPKEKTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59 Query: 210 AAEQVAAAEVL 220 A+Q A + L Sbjct: 60 KAQQAVANKAL 70 >gi|289807913|ref|ZP_06538542.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 61 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 3/45 (6%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEF 45 M+ + + L++++GY F ++ LL++ALTH S S + ERLEF Sbjct: 20 MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEF 61 >gi|332826413|ref|XP_003311807.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 [Pan troglodytes] gi|221044446|dbj|BAH13900.1| unnamed protein product [Homo sapiens] Length = 504 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 202 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 261 AAEAMLLQLG 270 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 9 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 68 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 69 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 127 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 128 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 169 >gi|221039638|dbj|BAH11582.1| unnamed protein product [Homo sapiens] Length = 390 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 286 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 344 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 345 AAEAMLLQLG 354 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 93 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 152 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 153 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 211 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 212 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 253 Score = 38.4 bits (87), Expect = 0.79, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V + + + S + A+Q A + L Sbjct: 18 KMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 50 >gi|221039518|dbj|BAH11522.1| unnamed protein product [Homo sapiens] Length = 398 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 134 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 192 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 193 AAEAMLLQLG 202 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 56 IKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 101 >gi|256418993|ref|NP_055208.2| double-stranded RNA-binding protein Staufen homolog 2 isoform e [Homo sapiens] gi|256419003|ref|NP_001157856.1| double-stranded RNA-binding protein Staufen homolog 2 isoform e [Homo sapiens] gi|168270864|dbj|BAG10225.1| double-stranded RNA-binding protein Staufen homolog 2 [synthetic construct] Length = 479 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|157074142|ref|NP_001096783.1| double-stranded RNA-binding protein Staufen homolog 2 [Bos taurus] gi|151554636|gb|AAI49988.1| STAU2 protein [Bos taurus] Length = 538 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPEKSAQNCESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|149721312|ref|XP_001491884.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen homolog 2 [Equus caballus] Length = 569 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L V P+YK+ GP H F+V + + + S + Sbjct: 1 MANPKEKTPMCLVNELARFNRVQPQYKLLRERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59 Query: 210 AAEQVAAAEVL 220 A+Q A + L Sbjct: 60 KAQQAVANKAL 70 >gi|119607409|gb|EAW87003.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_a [Homo sapiens] Length = 549 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 173 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L V P+YK+ GP H F+V + + + S + Sbjct: 1 MANPKEKTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59 Query: 210 AAEQVAAAEVL 220 A+Q A + L Sbjct: 60 KAQQAVANKAL 70 >gi|114620490|ref|XP_519808.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform 12 [Pan troglodytes] Length = 538 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A++ L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVASKAL 38 >gi|114620492|ref|XP_001165189.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] Length = 517 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A++ L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVASKAL 38 >gi|114620500|ref|XP_001165533.1| PREDICTED: hypothetical protein isoform 5 [Pan troglodytes] gi|114620502|ref|XP_001165569.1| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes] gi|114620504|ref|XP_001165598.1| PREDICTED: hypothetical protein isoform 7 [Pan troglodytes] gi|114620506|ref|XP_001165637.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform 8 [Pan troglodytes] gi|114620508|ref|XP_001165719.1| PREDICTED: hypothetical protein isoform 11 [Pan troglodytes] Length = 479 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A++ L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVASKAL 38 >gi|114620510|ref|XP_001165689.1| PREDICTED: staufen homolog 2 isoform 10 [Pan troglodytes] Length = 485 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 280 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 338 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 339 AAEAMLLQLG 348 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L+ F V P V SGP H F V + G A+G SK+ +++ AA VL Sbjct: 185 LKRNMPVSFEVYPIGPVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVL 243 Query: 221 KREG 224 + Sbjct: 244 QELK 247 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A++ L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVASKAL 38 >gi|114620488|ref|XP_001165116.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform 1 [Pan troglodytes] Length = 570 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 173 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273 Score = 48.8 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L V P+YK+ GP H F+V + + + S + Sbjct: 1 MANPKEKTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59 Query: 210 AAEQVAAAEVL 220 A+Q A++ L Sbjct: 60 KAQQAVASKAL 70 >gi|114620494|ref|XP_001165466.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes] gi|114620496|ref|XP_001165497.1| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes] gi|114620498|ref|XP_001165668.1| PREDICTED: hypothetical protein isoform 9 [Pan troglodytes] Length = 511 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 173 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273 Score = 48.8 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L V P+YK+ GP H F+V + + + S + Sbjct: 1 MANPKEKTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59 Query: 210 AAEQVAAAEVL 220 A+Q A++ L Sbjct: 60 KAQQAVASKAL 70 >gi|297299584|ref|XP_001084686.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform 4 [Macaca mulatta] Length = 570 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 50/163 (30%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + E A + V S Sbjct: 173 MKALQALQNEPIPERSPQSGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L V P+YK+ GP H F+V + + + S + Sbjct: 1 MANPKEKTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59 Query: 210 AAEQVAAAEVL 220 A+Q A + L Sbjct: 60 KAQQAVANKAL 70 >gi|23507041|gb|AAN37927.1|AF459098_1 double-stranded RNA-binding protein Staufen2 short isoform [Homo sapiens] gi|14249967|gb|AAH08369.1| STAU2 protein [Homo sapiens] gi|119607411|gb|EAW87005.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_c [Homo sapiens] gi|123999574|gb|ABM87331.1| staufen, RNA binding protein, homolog 2 (Drosophila) [synthetic construct] gi|157929178|gb|ABW03874.1| staufen, RNA binding protein, homolog 2 (Drosophila) [synthetic construct] Length = 538 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|73999250|ref|XP_849924.1| PREDICTED: similar to staufen, RNA binding protein, homolog 2 isoform LL (A) isoform 2 [Canis familiaris] Length = 540 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 276 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 334 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 335 AAEAMLLQLG 344 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|73999252|ref|XP_535103.2| PREDICTED: similar to staufen homolog 2 isoform 1 [Canis familiaris] Length = 479 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|73999248|ref|XP_860148.1| PREDICTED: similar to staufen, RNA binding protein, homolog 2 isoform LL (A) isoform 3 [Canis familiaris] Length = 544 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 280 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 338 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 339 AAEAMLLQLG 348 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 52/168 (30%), Gaps = 6/168 (3%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY-----K 176 + A L + + + + + + E A + + Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVFLSIQ 200 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 201 VIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 247 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|68533083|dbj|BAE06096.1| STAU2 variant protein [Homo sapiens] Length = 490 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 285 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 343 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 344 AAEAMLLQLG 353 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 92 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 151 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 152 MKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 210 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 211 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 252 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 16 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 49 >gi|207080126|ref|NP_001128815.1| DKFZP469K0112 protein [Pongo abelii] gi|55729500|emb|CAH91481.1| hypothetical protein [Pongo abelii] Length = 479 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|197101215|ref|NP_001124896.1| double-stranded RNA-binding protein Staufen homolog 2 [Pongo abelii] gi|55726277|emb|CAH89910.1| hypothetical protein [Pongo abelii] Length = 491 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 286 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 344 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 345 AAEAMLLQLG 354 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 93 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 152 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 153 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 211 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 212 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 253 Score = 38.4 bits (87), Expect = 0.79, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V + + + S + A+Q A + L Sbjct: 18 KMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 50 >gi|50949968|emb|CAH10527.1| hypothetical protein [Homo sapiens] Length = 314 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 109 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 167 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 168 AAEAMLLQLG 177 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 31 IKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 76 >gi|6634457|emb|CAB64341.1| 39k3 protein [Homo sapiens] gi|83404956|gb|AAI10448.1| Staufen, RNA binding protein, homolog 2 (Drosophila) [Homo sapiens] gi|119607412|gb|EAW87006.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_d [Homo sapiens] gi|189054410|dbj|BAG37183.1| unnamed protein product [Homo sapiens] Length = 479 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|7022914|dbj|BAA91766.1| unnamed protein product [Homo sapiens] gi|10435197|dbj|BAB14522.1| unnamed protein product [Homo sapiens] Length = 206 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 1 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 59 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 60 AAEAMLLQLG 69 >gi|73919458|sp|Q9NUL3|STAU2_HUMAN RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2 gi|23507039|gb|AAN37926.1|AF459097_1 double-stranded RNA-binding protein Staufen2 long isoform [Homo sapiens] gi|7023858|dbj|BAA92111.1| unnamed protein product [Homo sapiens] gi|119607410|gb|EAW87004.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_b [Homo sapiens] gi|119607413|gb|EAW87007.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_b [Homo sapiens] Length = 570 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 173 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L V P+YK+ GP H F+V + + + S + Sbjct: 1 MANPKEKTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59 Query: 210 AAEQVAAAEVL 220 A+Q A + L Sbjct: 60 KAQQAVANKAL 70 >gi|9081983|gb|AAF82687.1| dsRNA binding protein TCP-80 isoform [Homo sapiens] Length = 576 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 139 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 198 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 199 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 257 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 258 ASGPSKKTAKLHVAVKVLQDMGLPT 282 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 357 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 385 >gi|73986756|ref|XP_868127.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 5 [Canis familiaris] Length = 631 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 61 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 120 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 121 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 179 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 180 ASGPSKKTAKLHVAVKVLQDMGLPT 204 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 279 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 307 >gi|9714272|emb|CAC01407.1| double stranded RNA binding nuclear protein, ILF3 [Homo sapiens] Length = 591 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 23 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 82 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 83 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 141 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 142 ASGPSKKTAKLHVAVKVLQDMGLPT 166 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 241 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 269 >gi|327262381|ref|XP_003216003.1| PREDICTED: interferon-induced, double-stranded RNA-activated protein kinase-like [Anolis carolinensis] Length = 439 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 20/45 (44%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GPDH P F+ +I G G +K A+ AA ++ Sbjct: 136 SKDGPDHKPVFSQSCKIDGEILGVGTGNNKNIAKFNAAKMAYEKL 180 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 2/76 (2%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDPRFTVVVEISGLAPAQGMDCS 207 RD + + + + GP HD FTV V+I + Q + Sbjct: 1 MAANHRDPHVCMAKLHEYCQRNRLQLEYLELDIRGPPHDRIFTVAVQIDKIQYRQCEGKT 60 Query: 208 KRAAEQVAAAEVLKRE 223 K+ A+ AA + Sbjct: 61 KKEAKAHAAVLAWESI 76 >gi|326485005|gb|EGE09015.1| dicer-like protein 2 [Trichophyton equinum CBS 127.97] Length = 1417 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S +E I Y+F ++LL +L+H S + + +Y+RLEFLGD IL +++ LF Sbjct: 1136 SKIEPLIDYSFTKKALLATSLSHPS-NLISRMTYQRLEFLGDSILDNIVTRALFRCKKEI 1194 Query: 67 KEGELSVRFNSLVSAETCSQVARE 90 ++ + +LV+A+ + + Sbjct: 1195 PHQDMHLIRTALVNADFLAFLCMN 1218 Score = 43.0 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 34/72 (47%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 SS S +Y+RLEFLGD L L S L EG LS + +S+VS + A Sbjct: 971 SSTSAREDTNYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKDSIVSNSRLWKAAV 1030 Query: 90 ELDLASFIRVSS 101 + L FI + Sbjct: 1031 DTGLDQFILTTC 1042 >gi|326475978|gb|EGD99987.1| hypothetical protein TESG_07315 [Trichophyton tonsurans CBS 112818] Length = 1435 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 S +E I Y+F ++LL +L+H S + + +Y+RLEFLGD IL +++ LF Sbjct: 1154 SKIEPLIDYSFTKKALLATSLSHPS-NLISRMTYQRLEFLGDSILDNIVTRALFRCKKEI 1212 Query: 67 KEGELSVRFNSLVSAETCSQVARE 90 ++ + +LV+A+ + + Sbjct: 1213 PHQDMHLIRTALVNADFLAFLCMN 1236 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F N L+ A+T +S +Y+RLEFLGD L L S L EG LS + + Sbjct: 978 FQNIQLVLTAITATSAREDT--NYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKD 1035 Query: 77 SLVSAETCSQVARELDLASFIRVSS 101 S+VS + A + L FI + Sbjct: 1036 SIVSNSRLWKAAVDTGLDQFILTTC 1060 >gi|213408739|ref|XP_002175140.1| mitochondrial ribosomal protein subunit L3 [Schizosaccharomyces japonicus yFS275] gi|212003187|gb|EEB08847.1| mitochondrial ribosomal protein subunit L3 [Schizosaccharomyces japonicus yFS275] Length = 322 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 22/237 (9%) Query: 4 LRYSTLEKRIGY--AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 ++ TL+KR+ +F NR+L +AL S + L +G + L + Sbjct: 48 VKIYTLKKRLRLLESFPNRTL-ARALIDKSFPTHISNTNSLLWPIGRVLRDLYTLEYIKT 106 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV-------------- 107 + E ++V + L +Q+A L + + + + Sbjct: 107 KYPRLPEEGVAVLKDGLAGTAVLNQLAAMFGLETIGKDENLVDGMGKIIYSRVPAESFRQ 166 Query: 108 CSFMTSIQADVVESLIA----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 +A L ++ + + + K +L+ Sbjct: 167 GRESYKSEAVARTILSILAGVYIHEGNAAARLFVQNFMLSRYLPPDTLMLFQKPKQQLRA 226 Query: 164 WAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 P Y + +G +P F V V G QG S + ++ AA Sbjct: 227 LCRRLGVSKPVYYLEAETGRKSREPVFVVGVYADGERIGQGQASSLKLSQSQAAHNA 283 >gi|62512127|sp|Q9JIL3|ILF3_RAT RecName: Full=Interleukin enhancer-binding factor 3 Length = 897 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSTF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|532315|gb|AAA20994.1| NF90 protein [Homo sapiens] Length = 671 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 327 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 386 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 387 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 445 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 446 ASGPSKKTAKLHVAVKVLQDMGLPT 470 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 549 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 577 >gi|195037815|ref|XP_001990356.1| GH18282 [Drosophila grimshawi] gi|193894552|gb|EDV93418.1| GH18282 [Drosophila grimshawi] Length = 833 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAA 211 + L E P+Y + SGP H F VEI+G + +K+ A Sbjct: 756 QDKHPVCVLNELTSKNRWTPPQYTLRGDSGPSHSRMFLFSVEINGQSYTPAQSCNNKKEA 815 Query: 212 EQVAAAEVLKREGIW 226 + AA L+ GI Sbjct: 816 KMNAAKLCLRALGIL 830 >gi|119604541|gb|EAW84135.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_e [Homo sapiens] Length = 765 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|5006602|gb|AAD37575.1|AF141870_1 translational control protein 80 [Homo sapiens] Length = 764 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|332112807|gb|AEE02020.1| NF110b [Homo sapiens] Length = 898 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576 >gi|332253325|ref|XP_003275796.1| PREDICTED: LOW QUALITY PROTEIN: interleukin enhancer-binding factor 3-like [Nomascus leucogenys] Length = 898 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576 >gi|194376558|dbj|BAG57425.1| unnamed protein product [Homo sapiens] Length = 506 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 130 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 189 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 190 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 248 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 249 ASGPSKKTAKLHVAVKVLQDMGLPT 273 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 348 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 376 >gi|212549553|ref|NP_060090.2| interleukin enhancer-binding factor 3 isoform d [Homo sapiens] gi|119604538|gb|EAW84132.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_b [Homo sapiens] gi|261859362|dbj|BAI46203.1| interleukin enhancer binding factor 3, 90kDa [synthetic construct] Length = 898 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576 >gi|114675419|ref|XP_512380.2| PREDICTED: interleukin enhancer binding factor 3 isoform 12 [Pan troglodytes] Length = 895 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 323 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 382 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 383 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 441 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 442 ASGPSKKTAKLHVAVKVLQDMGLPT 466 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 545 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 573 >gi|114675397|ref|XP_001166471.1| PREDICTED: interleukin enhancer binding factor 3 isoform 7 [Pan troglodytes] gi|114675399|ref|XP_001166503.1| PREDICTED: interleukin enhancer binding factor 3 isoform 8 [Pan troglodytes] gi|114675401|ref|XP_001166614.1| PREDICTED: interleukin enhancer-binding factor 3 isoform 11 [Pan troglodytes] Length = 898 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576 >gi|73986772|ref|XP_854061.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 2 [Canis familiaris] Length = 896 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|73986766|ref|XP_868145.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 10 [Canis familiaris] Length = 845 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576 >gi|73986774|ref|XP_542066.2| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 1 [Canis familiaris] Length = 900 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576 >gi|73986764|ref|XP_868141.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 9 [Canis familiaris] Length = 874 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 304 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 363 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 364 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 422 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 423 ASGPSKKTAKLHVAVKVLQDMGLPT 447 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 522 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 550 >gi|73986768|ref|XP_868151.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 11 [Canis familiaris] Length = 876 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 306 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 365 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 366 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 424 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 425 ASGPSKKTAKLHVAVKVLQDMGLPT 449 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 524 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 552 >gi|301772006|ref|XP_002921413.1| PREDICTED: interleukin enhancer-binding factor 3-like [Ailuropoda melanoleuca] Length = 897 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 323 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 382 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 383 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 441 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 442 ASGPSKKTAKLHVAVKVLQDMGLPT 466 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 545 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 573 >gi|290463410|sp|Q6DD04|ILF3B_XENLA RecName: Full=Interleukin enhancer-binding factor 3-B; AltName: Full=Double-stranded RNA-binding protein 4F.2; Short=DsRNA-binding protein 4F.2 Length = 898 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + +YK+ ++GP H P FT+ VE+ + SK+ A+ Sbjct: 399 EPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDDKTF-EASGPSKKTAKLH 457 Query: 215 AAAEVLKREGIWT 227 A +VL+ G+ T Sbjct: 458 VAVKVLQDMGLPT 470 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G HD RF + VE+ G+ QG +K+ A+ AA L++ Sbjct: 541 ISETGGSHDKRFIMEVEVDGVKF-QGNGSNKKVAKAYAALSALEKL 585 >gi|281337392|gb|EFB12976.1| hypothetical protein PANDA_010307 [Ailuropoda melanoleuca] Length = 896 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|301171314|ref|NP_001180330.1| interleukin enhancer-binding factor 3-B [Xenopus laevis] gi|50414914|gb|AAH77828.1| Unknown (protein for MGC:80491) [Xenopus laevis] Length = 698 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + +YK+ ++GP H P FT+ VE+ + SK+ A+ Sbjct: 399 EPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDDKTF-EASGPSKKTAKLH 457 Query: 215 AAAEVLKREGIWT 227 A +VL+ G+ T Sbjct: 458 VAVKVLQDMGLPT 470 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G HD RF + VE+ G+ QG +K+ A+ AA L++ Sbjct: 541 ISETGGSHDKRFIMEVEVDGVKF-QGNGSNKKVAKAYAALSALEKL 585 >gi|5762315|gb|AAD51099.1| nuclear factor associated with dsRNA NFAR-2 [Homo sapiens] Length = 894 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|29126828|gb|AAH47984.1| LOC398578 protein [Xenopus laevis] Length = 854 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + +YK+ ++GP H P FT+ VE+ + SK+ A+ Sbjct: 389 EPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDDKTF-EASGPSKKTAKLH 447 Query: 215 AAAEVLKREGIWT 227 A +VL+ G+ T Sbjct: 448 VAVKVLQDMGLPT 460 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G HD RF + VE+ G+ QG +K+ A+ AA L++ Sbjct: 531 ISETGGSHDKRFIMEVEVDGVKF-QGNGSNKKVAKAYAALSALEKL 575 >gi|514260|gb|AAA19961.1| dsRNA-binding protein 4F.2 [Xenopus laevis] Length = 800 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + +YK+ ++GP H P FT+ VE+ + SK+ A+ Sbjct: 301 EPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDDKTF-EASGPSKKTAKLH 359 Query: 215 AAAEVLKREGIWT 227 A +VL+ G+ T Sbjct: 360 VAVKVLQDMGLPT 372 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G HD RF + VE+ G+ QG +K+ A+ AA L++ Sbjct: 443 ISETGGSHDKRFIMEVEVDGVKF-QGNGSNKKVAKAYAALSALEKL 487 >gi|12746296|gb|AAK07425.1| 110 kDa NFAR protein [Homo sapiens] Length = 894 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|73986770|ref|XP_868155.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 12 [Canis familiaris] Length = 896 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|24234750|ref|NP_036350.2| interleukin enhancer-binding factor 3 isoform a [Homo sapiens] gi|62512150|sp|Q12906|ILF3_HUMAN RecName: Full=Interleukin enhancer-binding factor 3; AltName: Full=Double-stranded RNA-binding protein 76; Short=DRBP76; AltName: Full=M-phase phosphoprotein 4; Short=MPP4; AltName: Full=Nuclear factor associated with dsRNA; Short=NFAR; AltName: Full=Nuclear factor of activated T-cells 90 kDa; Short=NF-AT-90; AltName: Full=Translational control protein 80; Short=TCP80 gi|119604540|gb|EAW84134.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_d [Homo sapiens] gi|119604542|gb|EAW84136.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_d [Homo sapiens] Length = 894 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|297703571|ref|XP_002828711.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 1 [Pongo abelii] Length = 861 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 293 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 352 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 353 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 411 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 412 ASGPSKKTAKLHVAVKVLQDMGLPT 436 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 511 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 539 >gi|290463409|sp|Q91550|ILF3A_XENLA RecName: Full=Interleukin enhancer-binding factor 3-A; AltName: Full=CCAAT box transcription factor subunit; AltName: Full=Double-stranded RNA-binding protein 4F.1; Short=DsRNA-binding protein 4F.1 Length = 897 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + +YK+ ++GP H P FT+ VE+ + SK+ A+ Sbjct: 399 EPPQVMNALMRLNQLKPGLQYKLISQTGPVHAPVFTMSVEVDDKTF-EASGPSKKTAKLH 457 Query: 215 AAAEVLKREGIWT 227 A +VL+ G+ T Sbjct: 458 VAVKVLQDMGLPT 470 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G HD RF + VE+ G+ QG +K+ A+ AA L++ Sbjct: 541 ISETGGSHDKRFVMEVEVDGVKF-QGSGSNKKVAKAYAALSALEKL 585 >gi|49257953|gb|AAH74107.1| Unknown (protein for IMAGE:6866473) [Xenopus laevis] Length = 477 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + +YK+ ++GP H P FT+ VE+ + SK+ A+ Sbjct: 399 EPPQVMNALMRLNQLKPGLQYKLISQTGPVHAPVFTMSVEVDDKTF-EASGPSKKTAKLH 457 Query: 215 AAAEVLKREGIWT 227 A +VL+ G+ T Sbjct: 458 VAVKVLQDMGLPT 470 >gi|514259|gb|AAA19960.1| dsRNA-binding protein 4F.1 [Xenopus laevis] Length = 695 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + +YK+ ++GP H P FT+ VE+ + SK+ A+ Sbjct: 399 EPPQVMNALMRLNQLKPGLQYKLISQTGPVHAPVFTMSVEVDDKTF-EASGPSKKTAKLH 457 Query: 215 AAAEVLKREGIWT 227 A +VL+ G+ T Sbjct: 458 VAVKVLQDMGLPT 470 Score = 58.4 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y++ +G HD RF + VE+ G+ QG +K+ A+ AA L++ Sbjct: 538 YEMISETGGSHDKRFVMEVEVDGVKF-QGSGSNKKVAKAYAALSALEKL 585 >gi|10834850|gb|AAG22859.1| CCAAT box transcription factor p122 subunit [Xenopus laevis] Length = 896 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + +YK+ ++GP H P FT+ VE+ + SK+ A+ Sbjct: 399 EPPQVMNALMRLNQLKPGLQYKLISQTGPVHAPVFTMSVEVDDKTF-EASGPSKKTAKLH 457 Query: 215 AAAEVLKREGIWT 227 A +VL+ G+ T Sbjct: 458 VAVKVLQDMGLPT 470 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G HD RF + VE+ G+ QG +K+ A+ AA L++ Sbjct: 541 ISETGGSHDKRFVMEVEVDGVKF-QGSGSNKKVAKAYAALSALEKL 585 >gi|147906306|ref|NP_001083930.1| interleukin enhancer-binding factor 3-A [Xenopus laevis] gi|83405079|gb|AAI10712.1| CBTF122 protein [Xenopus laevis] Length = 902 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + +YK+ ++GP H P FT+ VE+ + SK+ A+ Sbjct: 399 EPPQVMNALMRLNQLKPGLQYKLISQTGPVHAPVFTMSVEVDDKTF-EASGPSKKTAKLH 457 Query: 215 AAAEVLKREGIWT 227 A +VL+ G+ T Sbjct: 458 VAVKVLQDMGLPT 470 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G HD RF + VE+ G+ QG +K+ A+ AA L++ Sbjct: 541 ISETGGSHDKRFVMEVEVDGVKF-QGSGSNKKVAKAYAALSALEKL 585 >gi|229891738|sp|Q5BJ52|TRBP2_XENTR RecName: Full=RISC-loading complex subunit tarbp2 Length = 351 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 150 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFLEIGSGTSKKLAKRNA 208 Query: 216 AAEVLKRE 223 AA++L + Sbjct: 209 AAKMLLQI 216 >gi|229891737|sp|Q6GPZ1|TRBP2_XENLA RecName: Full=RISC-loading complex subunit tarbp2 Length = 351 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 150 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFLEIGSGTSKKLAKRNA 208 Query: 216 AAEVLKRE 223 AA++L + Sbjct: 209 AAKMLLQI 216 >gi|118405094|ref|NP_001072537.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Xenopus (Silurana) tropicalis] gi|112418622|gb|AAI22034.1| double-stranded RNA activated protein kinase 1 [Xenopus (Silurana) tropicalis] gi|168984501|emb|CAO98764.1| double-stranded RNA activated protein kinase 1 [Xenopus (Silurana) tropicalis] Length = 552 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 24/52 (46%) Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + +GP HDPRFT V ++ +G D K+ AE +AA L Sbjct: 21 YHFNEVEATGPSHDPRFTSQVFVNQEKLGEGQDKKKKGAENIAAKMALLTLK 72 Score = 50.7 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 17/61 (27%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + G H P F V I + +K+ A++ AA L Sbjct: 124 HELCQKHKLICKFFDECYGLPHIPEFWCKVVIGEEEFHKVKGNNKKEAKRKAAYFALMSL 183 Query: 224 G 224 Sbjct: 184 K 184 >gi|71895927|ref|NP_001025646.1| RISC-loading complex subunit tarbp2 [Xenopus (Silurana) tropicalis] gi|60550973|gb|AAH91619.1| TAR (HIV-1) RNA binding protein 2 [Xenopus (Silurana) tropicalis] Length = 331 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 130 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFLEIGSGTSKKLAKRNA 188 Query: 216 AAEVLKRE 223 AA++L + Sbjct: 189 AAKMLLQI 196 >gi|148232429|ref|NP_001085574.1| RISC-loading complex subunit tarbp2 [Xenopus laevis] gi|49115615|gb|AAH72963.1| MGC82499 protein [Xenopus laevis] Length = 331 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 130 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFLEIGSGTSKKLAKRNA 188 Query: 216 AAEVLKRE 223 AA++L + Sbjct: 189 AAKMLLQI 196 >gi|299756242|ref|XP_001829190.2| hypothetical protein CC1G_01870 [Coprinopsis cinerea okayama7#130] gi|298411587|gb|EAU92825.2| hypothetical protein CC1G_01870 [Coprinopsis cinerea okayama7#130] Length = 252 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 67/230 (29%), Gaps = 30/230 (13%) Query: 19 NRSLLEKALTHSSISHSYQESYE-----RLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 + ++ +A H++ + + RL+ +G ++L + ++ F+ + E+ Sbjct: 12 DLEIILEAF-HATAQSTDLNQRQWGDKARLQEIGVQVLHMALTAHYFSVKPNLSATEIQS 70 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + + + + D + D + + + S + Sbjct: 71 KVSEVRHGGRIHEWVGRYDNLIRFVMDKDSPAERGQLFEAYVGALWYSKGMKATQKWISD 130 Query: 134 VAGTFVDKYWKQRAL------------------------KSGKFRRDAKTELQEWAHAKF 169 + G V + A A Sbjct: 131 LLGDNVYVKDEPDDTAQDVTGDSSQSPPQYSPTATTTSGPPHPSVAPAIPLAHVNELAAQ 190 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 SGP H P +TV ++G + +G + +K+ A+ AA+ Sbjct: 191 RKINMTWEASFSGPPHMPIWTVRCLVNGQSYGEGTNANKKKAQAEAASNA 240 >gi|55741782|ref|NP_001007150.1| double-stranded RNA-binding protein Staufen homolog 2 isoform LL (A) [Rattus norvegicus] gi|19526444|gb|AAL89718.1|AF483620_1 RNA-binding protein staufen splice form A [Rattus norvegicus] Length = 571 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G +F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQARKEKEPDYVLLSERGMPRRRKFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L + P+YK+ SGP H F+V + + + S + Sbjct: 1 MANPKEKTPMCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59 Query: 210 AAEQVAAAEVL 220 A+Q A + L Sbjct: 60 KAQQAVANKAL 70 >gi|19526446|gb|AAL89719.1|AF483621_1 RNA-binding protein staufen splice form B [Rattus norvegicus] Length = 512 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ P+Y + G +F + V++ G A G +K+ A++ Sbjct: 306 MNPISRLAQIQQARKEKEPDYVLLSERGMPRRRKFVMQVKV-GNEVATGTGPNKKIAKKN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L + P+YK+ SGP H F+V + + + S + Sbjct: 1 MANPKEKTPMCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59 Query: 210 AAEQVAAAEVL 220 A+Q A + L Sbjct: 60 KAQQAVANKAL 70 >gi|194744759|ref|XP_001954860.1| GF18480 [Drosophila ananassae] gi|190627897|gb|EDV43421.1| GF18480 [Drosophila ananassae] Length = 871 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 1/81 (1%) Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD- 205 + L E P Y + +GP H F VEI+G Sbjct: 788 CPPLITHDKHPVCVLNELTSKNKWTPPHYTLRENTGPPHSRTFLFSVEINGQTYTPDRGC 847 Query: 206 CSKRAAEQVAAAEVLKREGIW 226 +K+ A+ AA L GI Sbjct: 848 NNKKEAKLNAAKLCLCALGIL 868 >gi|26346424|dbj|BAC36863.1| unnamed protein product [Mus musculus] Length = 528 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 339 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 398 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + Sbjct: 399 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 457 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 458 ASGPSKKTAKLHVAVKVLQDMGLPT 482 >gi|3834675|gb|AAC71052.1| interleukin enhancer binding factor 3 [Mus musculus] Length = 911 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 339 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 398 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + Sbjct: 399 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 457 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 458 ASGPSKKTAKLHVAVKVLQDMGLPT 482 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 557 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 585 >gi|148693240|gb|EDL25187.1| interleukin enhancer binding factor 3, isoform CRA_d [Mus musculus] Length = 919 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 350 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 409 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + Sbjct: 410 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 468 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 469 ASGPSKKTAKLHVAVKVLQDMGLPT 493 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 568 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 596 >gi|111607430|ref|NP_034691.2| interleukin enhancer-binding factor 3 isoform 1 [Mus musculus] gi|27764511|gb|AAO23054.1| interleukin enhancer binding factor 3 [Mus musculus] gi|148693241|gb|EDL25188.1| interleukin enhancer binding factor 3, isoform CRA_e [Mus musculus] Length = 911 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 339 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 398 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + Sbjct: 399 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 457 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 458 ASGPSKKTAKLHVAVKVLQDMGLPT 482 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 557 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 585 >gi|15529502|gb|AAL01308.1|AF403117_1 adenosine deaminase [Gallus gallus] gi|15529510|gb|AAL01312.1| adenosine deaminase [Gallus gallus] Length = 680 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 74 QYKLLSQTGPVHAPVFVMAVEVNGQVF-EGSGPTKKKAKLHAAEKALR 120 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+ SG H F + V + G +G +K+ A+ AA L Sbjct: 229 YEFLSESGESHAKNFVMAVAVDGQTF-EGSGRNKKLAKARAAQSALASL 276 >gi|15529496|gb|AAL01305.1|AF403114_1 adenosine deaminase [Gallus gallus] gi|15529504|gb|AAL01309.1| adenosine deaminase [Gallus gallus] Length = 524 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 95 QYKLLSQTGPVHAPVFVMAVEVNGQVF-EGSGPTKKKAKLHAAEKALR 141 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+ SG H F + V + G +G +K+ A+ AA L Sbjct: 250 YEFLSESGESHAKNFVMAVAVDGQTF-EGSGRNKKLAKARAAQSALASL 297 >gi|15529500|gb|AAL01307.1|AF403116_1 adenosine deaminase [Gallus gallus] gi|15529508|gb|AAL01311.1|AF403120_1 adenosine deaminase [Gallus gallus] Length = 503 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 74 QYKLLSQTGPVHAPVFVMAVEVNGQVF-EGSGPTKKKAKLHAAEKALR 120 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+ SG H F + V + G +G +K+ A+ AA L Sbjct: 229 YEFLSESGESHAKNFVMAVAVDGQTF-EGSGRNKKLAKARAAQSALASL 276 >gi|45383650|ref|NP_989571.1| RNA-specific adenosine deaminase B1 [Gallus gallus] gi|161702982|ref|NP_001104544.1| RNA-specific adenosine deaminase B1 [Gallus gallus] gi|15529498|gb|AAL01306.1|AF403115_1 adenosine deaminase [Gallus gallus] gi|15529506|gb|AAL01310.1| adenosine deaminase [Gallus gallus] gi|53127005|emb|CAG31002.1| hypothetical protein RCJMB04_1i12 [Gallus gallus] Length = 701 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 95 QYKLLSQTGPVHAPVFVMAVEVNGQVF-EGSGPTKKKAKLHAAEKALR 141 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+ SG H F + V + G +G +K+ A+ AA L Sbjct: 250 YEFLSESGESHAKNFVMAVAVDGQTF-EGSGRNKKLAKARAAQSALASL 297 >gi|114675413|ref|XP_001166155.1| PREDICTED: interleukin enhancer binding factor 3 isoform 2 [Pan troglodytes] Length = 725 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576 >gi|330417941|ref|NP_001193424.1| interleukin enhancer-binding factor 3 [Bos taurus] Length = 899 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576 >gi|321457253|gb|EFX68343.1| hypothetical protein DAPPUDRAFT_114652 [Daphnia pulex] Length = 201 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + L EW PEY+V +SGP H + + ++S +G+ SK+AA+ A Sbjct: 130 NPSGVLLEWRQTTHRPLPEYRVVRKSGPSHSKTYFMTCKLS-ERVTEGVGKSKKAAKNDA 188 Query: 216 AAEVLKRE 223 A ++L+ Sbjct: 189 AEKMLQIL 196 >gi|19113464|ref|NP_596672.1| mitochondrial ribosomal protein subunit L3 [Schizosaccharomyces pombe 972h-] gi|74644177|sp|O43042|RM03_SCHPO RecName: Full=60S ribosomal protein L3, mitochondrial; Flags: Precursor gi|2950480|emb|CAA17794.1| mitochondrial ribosomal protein subunit L3 [Schizosaccharomyces pombe] Length = 326 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 80/236 (33%), Gaps = 20/236 (8%) Query: 5 RYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + TL+KRIG + +L +AL ++ + Q S E+L +G + + + Sbjct: 46 KVYTLKKRIGLPESYPMKVLVQALIDKTVVQNPQYSNEKLWSIGKVFGDFYVLEYIKCKY 105 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKDV 107 E + N + ++ SQ+A L R LRK Sbjct: 106 PRLPEEAVHGMQNGWMGSKALSQLATIWGLEVQRREEGLQESFGKVLAKRADPEMLRKPG 165 Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD--AKTELQEWA 165 + + +++ +YL G F++ + + L + + +L Sbjct: 166 EIYKDEAARRAILAILGGVYLHQGFNDTKKFINDHILSKQLDPRTMLQLQWPRRQLSRLC 225 Query: 166 HAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P Y++ +G +P F + QG S AEQ AA L Sbjct: 226 KRLSLKEPVYRIIAETGRKSREPVFVIGAYSGHHLLGQGQASSLNLAEQQAAYNSL 281 >gi|297276121|ref|XP_002801113.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 3 [Macaca mulatta] Length = 764 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|297276117|ref|XP_002801112.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 2 [Macaca mulatta] Length = 706 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576 >gi|296485875|gb|DAA27990.1| interleukin enhancer binding factor 3, 90kDa [Bos taurus] Length = 954 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 385 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 444 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 445 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSSF-E 503 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 504 ASGPSKKTAKLHVAVKVLQDMGLPT 528 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 603 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 631 >gi|158255846|dbj|BAF83894.1| unnamed protein product [Homo sapiens] Length = 702 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|114675409|ref|XP_001166345.1| PREDICTED: interleukin enhancer-binding factor 3 isoform 5 [Pan troglodytes] Length = 706 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576 >gi|114675415|ref|XP_001166283.1| PREDICTED: interleukin enhancer binding factor 3 isoform 4 [Pan troglodytes] Length = 698 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576 >gi|114675407|ref|XP_001166580.1| PREDICTED: interleukin enhancer binding factor 3 isoform 10 [Pan troglodytes] Length = 777 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576 >gi|114675417|ref|XP_001166386.1| PREDICTED: interleukin enhancer binding factor 3 isoform 6 [Pan troglodytes] Length = 764 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|212549555|ref|NP_001131145.1| interleukin enhancer-binding factor 3 isoform e [Homo sapiens] gi|40674401|gb|AAH64836.1| ILF3 protein [Homo sapiens] gi|158256666|dbj|BAF84306.1| unnamed protein product [Homo sapiens] Length = 706 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576 >gi|4929371|gb|AAD33966.1|AF147209_1 double-stranded RNA-binding nuclear protein DRBP76 [Homo sapiens] Length = 702 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|73986752|ref|XP_868121.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform b isoform 3 [Canis familiaris] Length = 702 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|24234753|ref|NP_004507.2| interleukin enhancer-binding factor 3 isoform b [Homo sapiens] gi|9714268|emb|CAC01405.1| double-stranded RNA binding nuclear protein DRBP76 [Homo sapiens] gi|119604537|gb|EAW84131.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_a [Homo sapiens] Length = 702 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|332112803|gb|AEE02018.1| NF90a [Homo sapiens] Length = 702 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|321468345|gb|EFX79330.1| hypothetical protein DAPPUDRAFT_244967 [Daphnia pulex] Length = 96 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + L EW + PEY+V +SGP H + + ++S +G SK+AA+ A Sbjct: 25 NPSGVLSEWRFTRHSSLPEYRVVRKSGPSHSKTYFMTCKLSDRV-TEGEGKSKKAAKNDA 83 Query: 216 AAEVLKRE 223 A ++L+ Sbjct: 84 AQKMLQIL 91 >gi|311248674|ref|XP_003123290.1| PREDICTED: interleukin enhancer-binding factor 3-like [Sus scrofa] Length = 856 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGDEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 546 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 574 >gi|219968357|emb|CAO98758.1| double-stranded RNA activated protein kinase 1 [Tetraodon nigroviridis] Length = 667 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 Y+ GPDH F +V I+ A +G+ +K+ A+Q AA WT Sbjct: 21 YEDVGCDGPDHFRTFKIVTIINDRAFPEGVGKNKKDAKQKAAENA------WT 67 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 20/48 (41%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + + + R GP H P+F + I G G + + A Q AA Sbjct: 242 SHSFVMVDRQGPSHGPQFYYQLSIDGHKYPVGEGKTAKEARQNAAQLA 289 >gi|159163148|pdb|1UHZ|A Chain A, Solution Structure Of Dsrna Binding Domain In Staufen Homolog 2 Length = 89 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + L + A+ P+Y + G F + V++ G A G +K+ A++ AA Sbjct: 8 PISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKNAA 66 Query: 217 AEVLKREG 224 +L + G Sbjct: 67 EAMLLQLG 74 >gi|12746295|gb|AAK07424.1| 90 kDa NFAR protein [Homo sapiens] Length = 702 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|164508744|emb|CAM07147.1| double stranded RNA activated protein kinase 1 [Tetraodon nigroviridis] Length = 667 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 Y+ GPDH F +V I+ A +G+ +K+ A+Q AA WT Sbjct: 21 YEDVGCDGPDHFRTFKIVTIINDRAFPEGVGKNKKDAKQKAAENA------WT 67 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 20/48 (41%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + + + R GP H P+F + I G G + + A Q AA Sbjct: 242 SHSFVMVDRQGPSHGPQFYYQLSIDGHKYPVGEGKTAKEARQNAAQLA 289 >gi|119604539|gb|EAW84133.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_c [Homo sapiens] Length = 858 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576 >gi|114675405|ref|XP_001166048.1| PREDICTED: interleukin enhancer binding factor 3 isoform 1 [Pan troglodytes] Length = 860 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576 >gi|5762313|gb|AAD51098.1| nuclear factor associated with dsRNA NFAR-1 [Homo sapiens] Length = 702 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|332112805|gb|AEE02019.1| NF90b [Homo sapiens] Length = 706 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576 >gi|9081982|gb|AAF82686.1| dsRNA binding protein NFAR-1/DRB76 [Homo sapiens] Length = 515 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 139 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 198 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 199 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 257 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 258 ASGPSKKTAKLHVAVKVLQDMGLPT 282 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 357 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 385 >gi|148693237|gb|EDL25184.1| interleukin enhancer binding factor 3, isoform CRA_a [Mus musculus] Length = 553 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 350 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 409 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + Sbjct: 410 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 468 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 469 ASGPSKKTAKLHVAVKVLQDMGLPT 493 >gi|119604543|gb|EAW84137.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_f [Homo sapiens] Length = 589 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 61 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 120 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 121 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 179 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 180 ASGPSKKTAKLHVAVKVLQDMGLPT 204 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 279 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 307 >gi|299756084|ref|XP_001829079.2| hypothetical protein CC1G_01759 [Coprinopsis cinerea okayama7#130] gi|298411515|gb|EAU92714.2| hypothetical protein CC1G_01759 [Coprinopsis cinerea okayama7#130] Length = 352 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 SGP H + V ++G+ +G SK+ A++ AA + G WT Sbjct: 305 QFSGPSHAGTWLVRCIVNGIPKGEGTGSSKQNAKEEAARQAYYAMG-WT 352 Score = 43.8 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 17 FANRSLLEKALTHSS------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 +N L+ + THSS S Q ERL +LG +L +++ LLF+ + GE Sbjct: 46 ISNTDLVLQIFTHSSLRTRLTCSSLDQYDNERLSWLGKHVLDSVVTELLFDTRPMLRAGE 105 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 + R L+ + + L +R LR+ D+ + A +YLD Sbjct: 106 IVERKEELLCDDLFEEWVTHYGLLRKLRYDPVLRESSGITKPQETRDIFYAYTAGVYLDS 165 Query: 131 GIEVAGTFVD 140 G V ++ Sbjct: 166 GAPVVREWIQ 175 >gi|297685923|ref|XP_002820521.1| PREDICTED: double-stranded RNA-specific editase B2-like, partial [Pongo abelii] Length = 345 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y+ ++GP H P F V VE++GL +G +K+ A+ AA L+ Sbjct: 78 QYRTVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 124 >gi|296206058|ref|XP_002750047.1| PREDICTED: double-stranded RNA-specific editase B2-like [Callithrix jacchus] Length = 998 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y+ ++GP H P F V VE++GL +G +K+ A+ AA L+ Sbjct: 397 QYRTVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 443 >gi|187950663|gb|AAI37478.1| Adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo sapiens] gi|187954983|gb|AAI40853.1| Adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo sapiens] Length = 739 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y+ ++GP H P F V VE++GL +G +K+ A+ AA L+ Sbjct: 141 QYRTVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 187 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F + V + G +G SK+ A AA L+ Sbjct: 303 ARSFVMAVSVDGRTF-EGSGRSKKLARGQAAQAALQEL 339 >gi|148693238|gb|EDL25185.1| interleukin enhancer binding factor 3, isoform CRA_b [Mus musculus] Length = 909 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 337 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 396 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + Sbjct: 397 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 455 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 456 ASGPSKKTAKLHVAVKVLQDMGLPT 480 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 555 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 583 >gi|148693239|gb|EDL25186.1| interleukin enhancer binding factor 3, isoform CRA_c [Mus musculus] Length = 727 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 350 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 409 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + Sbjct: 410 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 468 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 469 ASGPSKKTAKLHVAVKVLQDMGLPT 493 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 568 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 596 >gi|109088041|ref|XP_001118272.1| PREDICTED: double-stranded RNA-specific editase B2, partial [Macaca mulatta] Length = 504 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y+ ++GP H P F V VE++GL +G +K+ A+ AA L+ Sbjct: 141 QYRTVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 187 >gi|111607434|ref|NP_001036173.1| interleukin enhancer-binding factor 3 isoform 3 [Mus musculus] gi|28704095|gb|AAH47272.1| Interleukin enhancer binding factor 3 [Mus musculus] gi|71044411|gb|AAZ20651.1| nuclear factor 90 [Mus musculus] Length = 716 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 339 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 398 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + Sbjct: 399 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 457 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 458 ASGPSKKTAKLHVAVKVLQDMGLPT 482 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 557 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 585 >gi|111607432|ref|NP_001036172.1| interleukin enhancer-binding factor 3 isoform 2 [Mus musculus] gi|62512154|sp|Q9Z1X4|ILF3_MOUSE RecName: Full=Interleukin enhancer-binding factor 3 gi|21070213|gb|AAM34210.1|AF506968_1 interleukin enhancer binding factor 3 [Mus musculus] gi|26339136|dbj|BAC33239.1| unnamed protein product [Mus musculus] gi|27764513|gb|AAO23055.1| interleukin enhancer binding factor 3 [Mus musculus] Length = 898 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + Sbjct: 386 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|8922077|ref|NP_061172.1| double-stranded RNA-specific editase B2 [Homo sapiens] gi|33112436|sp|Q9NS39|RED2_HUMAN RecName: Full=Double-stranded RNA-specific editase B2; AltName: Full=RNA-dependent adenosine deaminase 3; AltName: Full=RNA-editing deaminase 2; AltName: Full=RNA-editing enzyme 2; AltName: Full=dsRNA adenosine deaminase B2 gi|8650031|gb|AAF78094.1| double-stranded RNA specific adenosine deaminase [Homo sapiens] gi|55665370|emb|CAH72171.1| adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo sapiens] gi|55665458|emb|CAH73405.1| adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo sapiens] gi|119606914|gb|EAW86508.1| adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo sapiens] Length = 739 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y+ ++GP H P F V VE++GL +G +K+ A+ AA L+ Sbjct: 141 QYRTVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 187 Score = 45.7 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F + V + G +G SK+ A AA L+ Sbjct: 303 ARSFVMAVSVDGRTF-EGSGRSKKLARGQAAQAALQEL 339 >gi|291238580|ref|XP_002739212.1| PREDICTED: Probable RISC-loading complex subunit BRAFLDRAFT_242885-like [Saccoglossus kowalevskii] Length = 315 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 TP Y + G H P+F V + G A G SK+ A+ AA VL++ + Sbjct: 25 TPIYDLIACEGAAHQPKFVYRVTV-GEHTANGDGTSKKQAKHNAAENVLEQFNV 77 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + +LQE A+ P+Y GP H F + + QG SK+ A++ A Sbjct: 109 NPVGQLQELVVARHWRRPDYIQISECGPPHSREFIIACRVHSFQE-QGKGRSKKIAKRAA 167 Query: 216 AAEVLKRE 223 A +L+R Sbjct: 168 AWAMLQRI 175 >gi|20178435|ref|NP_619856.1| CPXV069 protein [Cowpox virus] gi|20153053|gb|AAM13514.1|AF482758_65 CPXV069 protein [Cowpox virus] gi|14488159|emb|CAC42100.1| dsRNA binding protein [Cowpox virus] Length = 190 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 28/124 (22%), Gaps = 2/124 (1%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + R AD + I Sbjct: 57 YSSDDIPPRWFTTMEADKPDADAMADSIIDDASREKSMREDHKSFDDVIPAKKIIDWKDA 116 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + E+ GP + P F V+I G + SKR A+ A Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174 Query: 216 AAEV 219 A Sbjct: 175 AKLA 178 >gi|111607436|ref|NP_001036174.1| interleukin enhancer-binding factor 3 isoform 4 [Mus musculus] gi|71044413|gb|AAZ20652.1| nuclear factor 90 [Mus musculus] Length = 703 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + Sbjct: 386 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|327270557|ref|XP_003220056.1| PREDICTED: double-stranded RNA-specific editase 1-like [Anolis carolinensis] Length = 698 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G A +G +K+ A+ AA + L+ Sbjct: 93 QYKLISQTGPVHAPVFVMAVEVNGQAF-EGSGPTKKKAKLHAAEKALR 139 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 247 YDFLSESGESHAKNFVMAVSVDGHTF-EGSGRNKKLAKARAAQSALASL 294 >gi|221040030|dbj|BAH11778.1| unnamed protein product [Homo sapiens] Length = 473 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V + G A G +K+ A++ Sbjct: 268 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVTV-GNEVATGTGPNKKIAKKN 326 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 327 AAEAMLLQLG 336 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 75 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 134 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 135 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 193 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 194 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 235 >gi|126322875|ref|XP_001366516.1| PREDICTED: similar to interleukin enhancer binding factor 3, 90kDa, [Monodelphis domestica] Length = 1084 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ +IQ + E Sbjct: 512 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTIQIPPSTTYAITPMKRPMEEDGEEKSPSK 571 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 572 KKKKIQKKEEKTEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGSSF-E 630 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 631 ASGPSKKTAKLHVAVKVLQDMGLPT 655 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G HD RF + VE+ G QG +K+ A+ AA L++ Sbjct: 730 ISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAFAALTALEKL 774 >gi|15221749|ref|NP_173854.1| NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III [Arabidopsis thaliana] gi|9743333|gb|AAF97957.1|AC000103_7 F21J9.11 [Arabidopsis thaliana] gi|15010594|gb|AAK73956.1| At1g24450/F21J9_210 [Arabidopsis thaliana] gi|20334854|gb|AAM16183.1| At1g24450/F21J9_210 [Arabidopsis thaliana] gi|332192410|gb|AEE30531.1| nuclear fusion defective 2 protein /ribonuclease III [Arabidopsis thaliana] Length = 191 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 4/121 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + L+ +IGY F N +LL +A+TH+S S + + L G I+ +S Sbjct: 47 DLAKLQTQIGYKFNNINLLRRAMTHASFSQE---NNKALSIFGTHIIETAVSLQFLAKDI 103 Query: 65 SAKEGELSVRFNSLVS-AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 L + + + +C+ L L IRVS+ + + + + ++ Sbjct: 104 DISSKALGRLISEVSNVESSCALDGDRLGLGKIIRVSTKTDASNSAILCTGFRAIFGAIA 163 Query: 124 A 124 Sbjct: 164 I 164 >gi|224055960|ref|XP_002192699.1| PREDICTED: RNA-specific adenosine deaminase B1 [Taeniopygia guttata] Length = 768 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 162 QYKLLSQTGPVHAPMFVMAVEVNGQVF-EGSGPTKKKAKLHAAEKALR 208 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+ SG H F + V + G +G +K+ A+ AA L Sbjct: 317 YEFLSESGESHAKNFIMAVAVDGQTF-EGSGRNKKLAKARAAQSALASL 364 >gi|1770458|emb|CAA66918.1| M-phase phosphoprotein 4 [Homo sapiens] Length = 611 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|332853012|ref|XP_001166193.2| PREDICTED: interleukin enhancer-binding factor 3 isoform 3 [Pan troglodytes] Length = 690 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|297276119|ref|XP_001102411.2| PREDICTED: interleukin enhancer-binding factor 3-like isoform 1 [Macaca mulatta] Length = 690 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|24234756|ref|NP_703194.1| interleukin enhancer-binding factor 3 isoform c [Homo sapiens] gi|9714270|emb|CAC01406.1| double-stranded RNA binding nuclear protein DRBP76 delta [Homo sapiens] Length = 690 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|254233016|ref|ZP_04926343.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis C] gi|124602075|gb|EAY61085.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis C] Length = 198 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 4/169 (2%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRV 99 +EFLGD +LGL I+ LF+ EG+L+ S+V+ + + VAR L L + + Sbjct: 1 MEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLL 60 Query: 100 SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AK 158 + +SI AD +ESL+ A+YL G+E A + + + + Sbjct: 61 GRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDW 120 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + A G+ + +GPDHD FT VV + G+ S Sbjct: 121 KTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRS 169 >gi|297703573|ref|XP_002828712.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 2 [Pongo abelii] Length = 669 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 293 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 352 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 353 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 411 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 412 ASGPSKKTAKLHVAVKVLQDMGLPT 436 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 511 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 539 >gi|9714266|emb|CAC01404.1| DRBP76 alpha [Homo sapiens] Length = 564 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 192 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 251 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 252 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 310 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 311 ASGPSKKTAKLHVAVKVLQDMGLPT 335 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 414 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 442 >gi|307109321|gb|EFN57559.1| hypothetical protein CHLNCDRAFT_143199 [Chlorella variabilis] Length = 2232 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 37/78 (47%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E +G+ FA++ L+ +ALTH S S ++RLEFLGD +L L+ + + Sbjct: 1924 DVGAIEAVLGHTFASKWLVVEALTHCSWPGSGVRCFQRLEFLGDAVLDALMHDMRSVAVN 1983 Query: 65 SAKEGELSVRFNSLVSAE 82 +++ V Sbjct: 1984 ASRLAYAGKPGLDFVEEW 2001 >gi|51870138|ref|YP_073691.1| hypothetical protein LDVICp186 [Lymphocystis disease virus - isolate China] gi|51858346|gb|AAU11030.1| hypothetical protein [Lymphocystis disease virus - isolate China] Length = 251 Score = 59.6 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 69/209 (33%), Gaps = 8/209 (3%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVR 74 ++ L +A T S+ +YE LE LGD + + + F + + ++ Sbjct: 28 DKEL-TQAFTPPSV--DPSINYESLEILGDGVAAYFLPMYFYKSFPQLQNPKGVKAIARL 84 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 + S + S +A+ L +I+ +L+ + + + + S+ L +E Sbjct: 85 KINYASRRSFSSIAKFLGFWPYIKKPKNLKINQKKLLEDVFEAFLGSVCLILDNHFNVEG 144 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 GT V + + + K K H Sbjct: 145 IGTAVCYNFLKSVFDGMTIEINYKALFDPKTRLKELTDKHKTELGLPDYTHSGN-KTECY 203 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + G A +++ EQ + ++L+ Sbjct: 204 VGGELLAVVYGSNQKDREQEGSEKILEIL 232 >gi|155573864|gb|ABU24344.1| dsRNA-activated protein kinase R [Salmo salar] Length = 713 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +++ GPDH FT+ V I G A G+ +K+ A++ AA L Sbjct: 11 FEYAQRQGQISDIKFEEVGTDGPDHLKTFTLRVVIKGHAYPNGVGKTKKEAKRNAAKHAL 70 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 22/194 (11%), Positives = 53/194 (27%), Gaps = 6/194 (3%) Query: 31 SISHSYQESYE-RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 S + + + + L+ L +G ++ + KE + E + Sbjct: 109 SWLNEHSQKNKLSLKALEGARVGPNNTSQCCRYVVGEKEYPEGFGNTKKEAKEEAAMQVY 168 Query: 90 ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 + + + + ++ + ++ Sbjct: 169 LELCGGSQTTGTVDENCNGTTGKHKEELNGKVVVLSEKVEH-----MNMSPAQNVPEQYS 223 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + K ++K+ +SGP H+P+F V I G+ + + Sbjct: 224 FITTEETNFIGILNHYCQKTKRFLDFKLVEKSGPSHNPQFVYKVLIDKREYPDGLGKTAK 283 Query: 210 AAEQVAAAEVLKRE 223 A+Q AA Sbjct: 284 EAKQQAAQLAWSAL 297 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 2/101 (1%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +LI + + + + A K H++ + Sbjct: 68 HALIGMMETTEQKDASVSCPPSPAPSPAPPVRAVISQPKYVSWLNEHSQKNKLSLKALEG 127 Query: 180 -RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 R GP++ + + +G +K+ A++ AA +V Sbjct: 128 ARVGPNNTSQ-CCRYVVGEKEYPEGFGNTKKEAKEEAAMQV 167 >gi|158254910|dbj|BAF83426.1| unnamed protein product [Homo sapiens] Length = 366 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K +PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 159 NPVGALQELVVQKGWRSPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 217 Query: 216 AAEVL 220 AA++L Sbjct: 218 AAKML 222 >gi|169612533|ref|XP_001799684.1| hypothetical protein SNOG_09389 [Phaeosphaeria nodorum SN15] gi|111062461|gb|EAT83581.1| hypothetical protein SNOG_09389 [Phaeosphaeria nodorum SN15] Length = 474 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 70/221 (31%), Gaps = 22/221 (9%) Query: 23 LEKA-LTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 L++A TH SI + YERLE+LGD + L+ S L+N F +L Sbjct: 162 LQEAVFTHRSIHANNVNVHQHVDFGLDYERLEYLGDAYIELIASRALYNRFPHVDVPQLC 221 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV ++ + ++ + + AD+ E+ +A + L Sbjct: 222 SWRERLVENVALAKFSEAYGFPDQLKRKVEFD-KNSKAWRKVVADIFEAYVAGVVLSDPE 280 Query: 133 EVAGTFVDKYWKQR------ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 T + + A+ +LQ+ + Sbjct: 281 NGFATAEKWLDELWASQLLNFQEKVVENARARDDLQKLLVVNGIQLNYKEEKPMIMEQGV 340 Query: 187 PRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKR 222 ++ + V + G K A AA + +KR Sbjct: 341 QKYYLGVYLTGWGYEDEWLGSGDGQKKAQACISAATDAIKR 381 >gi|332256664|ref|XP_003277436.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 5 [Nomascus leucogenys] Length = 674 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|332256660|ref|XP_003277434.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 3 [Nomascus leucogenys] Length = 741 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|332256658|ref|XP_003277433.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 2 [Nomascus leucogenys] Length = 729 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 122 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 168 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 277 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 321 >gi|332256656|ref|XP_003277432.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 1 [Nomascus leucogenys] gi|332256662|ref|XP_003277435.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 4 [Nomascus leucogenys] Length = 701 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|311270262|ref|XP_003132836.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific editase 1-like [Sus scrofa] Length = 816 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 256 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 302 >gi|297708140|ref|XP_002830837.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2 [Pongo abelii] Length = 674 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|297708138|ref|XP_002830836.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1 [Pongo abelii] Length = 740 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 133 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 179 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 288 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 332 >gi|297287384|ref|XP_001118216.2| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1 [Macaca mulatta] Length = 674 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|297287382|ref|XP_002803150.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2 [Macaca mulatta] Length = 740 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 133 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 179 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 288 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 332 >gi|296232315|ref|XP_002761540.1| PREDICTED: double-stranded RNA-specific editase 1 [Callithrix jacchus] Length = 740 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 133 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 179 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 288 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 332 >gi|239985464|ref|NP_001155267.1| RNA-specific adenosine deaminase B1 isoform 4 [Pan troglodytes] Length = 674 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|239985462|ref|NP_001155266.1| RNA-specific adenosine deaminase B1 isoform 2 [Pan troglodytes] Length = 741 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|239985460|ref|NP_001155265.1| RNA-specific adenosine deaminase B1 isoform 3 [Pan troglodytes] Length = 714 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|239985458|ref|NP_001122104.2| RNA-specific adenosine deaminase B1 isoform 1 [Pan troglodytes] Length = 701 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|126326680|ref|XP_001377363.1| PREDICTED: similar to protein activator of the interferon-induced protein kinase [Monodelphis domestica] Length = 520 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 2/126 (1%) Query: 97 IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 RV+ + A ++ AA+ V K K + + Sbjct: 275 FRVTIGDIICTGEGSSKKMAKH-KAAEAAIGHLKANASLCFAVPDPTAPDPSKQPKNQAN 333 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 LQE A PEY ++ GP H FT + + G SK+ A++ AA Sbjct: 334 PIGSLQELAIQHGWRLPEYTLSQEGGPAHKKEFTTICRLE-SFIETGKGASKKQAKRNAA 392 Query: 217 AEVLKR 222 + L + Sbjct: 393 EKFLAK 398 Score = 50.7 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 1/67 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 ++ K P Y+ G + P FT V I + G SK+ A+ AA Sbjct: 242 PIQVLHEYGMKTNNVPVYEFERADGHANTPSFTFRVTIGDI-ICTGEGSSKKMAKHKAAE 300 Query: 218 EVLKREG 224 + Sbjct: 301 AAIGHLK 307 >gi|119629763|gb|EAX09358.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform CRA_b [Homo sapiens] Length = 700 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 Y SG H F + V + G +G +K+ A+ Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285 >gi|41351285|gb|AAH65545.1| Adenosine deaminase, RNA-specific, B1 (RED1 homolog rat) [Homo sapiens] Length = 701 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 Y SG H F + V + G +G +K+ A+ Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285 >gi|21954729|gb|AAM83100.1|AF525422_1 adenosine deaminase ADAR2 [Homo sapiens] gi|23266659|gb|AAN10291.1| adenosine deaminase [Homo sapiens] Length = 729 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 122 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 168 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 Y SG H F + V + G +G +K+ A+ Sbjct: 277 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 313 >gi|22506829|gb|AAM97654.1| adenosine deaminase ADAR2 variant [Homo sapiens] Length = 701 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 Y SG H F + V + G +G +K+ A+ Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285 >gi|2114493|gb|AAB58300.1| RNA editase [Homo sapiens] Length = 741 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 Y SG H F + V + G +G +K+ A+ Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285 >gi|119629762|gb|EAX09357.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform CRA_a [Homo sapiens] Length = 729 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 122 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 168 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 Y SG H F + V + G +G +K+ A+ Sbjct: 277 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 313 >gi|7669479|ref|NP_056649.1| double-stranded RNA-specific editase 1 isoform 3 [Homo sapiens] gi|2039302|gb|AAC51242.1| dsRNA adenosine deaminase DRADA2c [Homo sapiens] gi|119629766|gb|EAX09361.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform CRA_e [Homo sapiens] Length = 714 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 Y SG H F + V + G +G +K+ A+ Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285 >gi|237681091|ref|NP_001153702.1| double-stranded RNA-specific editase 1 isoform 7 [Homo sapiens] gi|71274097|dbj|BAE16329.1| adenosine deaminase acting on RNA type2d [Homo sapiens] Length = 674 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 Y SG H F + V + G +G +K+ A+ Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285 >gi|4379098|emb|CAB09392.1| RNA editing deaminase 1 [Homo sapiens] Length = 699 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 Y SG H F + V + G +G +K+ A+ Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285 >gi|7669477|ref|NP_056648.1| double-stranded RNA-specific editase 1 isoform 2 [Homo sapiens] gi|2829669|sp|P78563|RED1_HUMAN RecName: Full=Double-stranded RNA-specific editase 1; AltName: Full=RNA-editing deaminase 1; AltName: Full=RNA-editing enzyme 1; AltName: Full=dsRNA adenosine deaminase gi|1707502|emb|CAA67611.1| double-stranded RNA-specific editase [Homo sapiens] gi|1766056|gb|AAB61687.1| double stranded RNA-specific editase 1 hRED1-L [Homo sapiens] gi|2039300|gb|AAC51241.1| dsRNA adenosine deaminase DRADA2b [Homo sapiens] gi|7717441|emb|CAB90493.1| human dsRNA adenosine deaminase DRADA2b, EC 3.5 [Homo sapiens] gi|119629765|gb|EAX09360.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform CRA_d [Homo sapiens] Length = 741 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 Y SG H F + V + G +G +K+ A+ Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285 >gi|4501919|ref|NP_001103.1| double-stranded RNA-specific editase 1 isoform 1 [Homo sapiens] gi|1707504|emb|CAA67762.1| double-stranded RNA-specific editase [Homo sapiens] gi|1766054|gb|AAB61686.1| double stranded RNA-specific editase 1 hRED1-S [Homo sapiens] gi|2039298|gb|AAC51240.1| dsRNA adenosine deaminase DRADA2a [Homo sapiens] gi|71274091|dbj|BAE16326.1| adenosine deaminase acting on RNA type2a [Homo sapiens] gi|71274093|dbj|BAE16327.1| adenosine deaminase acting on RNA type2a [Homo sapiens] gi|71274095|dbj|BAE16328.1| adenosine deaminase acting on RNA type2a [Homo sapiens] gi|119629764|gb|EAX09359.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform CRA_c [Homo sapiens] Length = 701 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 Y SG H F + V + G +G +K+ A+ Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285 >gi|313224452|emb|CBY20242.1| unnamed protein product [Oikopleura dioica] Length = 2082 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 1/109 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L+ + Y F L AL + ++++ERLEFLGD +L L+ L+N + Sbjct: 1879 IDELQNELEYTFKTPHLCRLALAKKKYTKDPKDNFERLEFLGDAVLDYLVVDELYNRRSA 1938 Query: 66 A-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 A G+L+ S+ S +A + L + + KD S M Sbjct: 1939 ALDSGQLTDLKQSITSNNLFGSLAFCMGLPQSTLMKASAAKDHISCMYK 1987 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 3/95 (3%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 SLL +ALT + + + ERLEF GD + + + +L+ + +GEL+ + + Sbjct: 1671 PSLLLRALTQPTAND--FFNLERLEFFGDSFIKIACTRMLYEKYAHFSDGELTSARGAYI 1728 Query: 80 SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTS 113 S ++ + L S +++ + S TS Sbjct: 1729 SNANFLKLLKLRLSDGSCLQIPRYMNCYDNSRKTS 1763 >gi|328865990|gb|EGG14376.1| putative RNase III [Dictyostelium fasciculatum] Length = 576 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 65/193 (33%), Gaps = 23/193 (11%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----------------YERLEFLGD 48 + + I +F N LL + TH S + +RLEFLGD Sbjct: 131 KVDQFQSNI-ISFENDLLLREIFTHPSSKKINSLNPAEYKLFKDLLPFTTDNQRLEFLGD 189 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 IL S LF + A EGEL+ R + L + + E + +R SS Sbjct: 190 SILKFCASIYLFFKYPKANEGELTTRRSELTNNTYLLEKCNEWGIIELLRYSSTEDIK-- 247 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 +ADV+E++ A++L+ G + F+ S + + Sbjct: 248 ----KPKADVMEAMFGAIFLERGFKEVYRFIVHTVYNDHQYSTLPTFKCNHSFERQLSSI 303 Query: 169 FGVTPEYKVTFRS 181 S Sbjct: 304 QSKFLFDVQVKIS 316 Score = 43.0 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 7/95 (7%) Query: 5 RYSTLEKRI----GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + S+++ + + LLE A+T SY+RLEFLGD L ++S L+ Sbjct: 299 QLSSIQSKFLFDVQVKISKVCLLEDAIT---CLGDQNYSYQRLEFLGDSYLDGIVSHFLY 355 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95 F EG LS LV E +Q+++ + L Sbjct: 356 REFPLENEGFLSQARALLVRNEALAQISQRIKLYQ 390 >gi|224157911|ref|XP_002199819.1| PREDICTED: similar to interleukin enhancer binding factor 3, 90kDa, partial [Taeniopygia guttata] Length = 755 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 323 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAVTPMKRPMEEDGEEKSPSK 382 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VEI G + Sbjct: 383 KKKKIQKKEEKLEPPQAMNALMKLNQLKPGLQYKLVSQTGPVHAPIFTMSVEIDGSTF-E 441 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 442 ASGPSKKTAKLHVAVKVLQDMGLPT 466 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 546 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 574 >gi|296229005|ref|XP_002760091.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform 3 [Callithrix jacchus] Length = 1181 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 517 QTCEFNLIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K G + E+++ + GP H+P+F V++ SK+ A+Q+AA E +K Sbjct: 622 CMHKLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 728 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 773 >gi|296229003|ref|XP_002760090.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform 2 [Callithrix jacchus] Length = 1200 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 517 QTCEFNLIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K G + E+++ + GP H+P+F V++ SK+ A+Q+AA E +K Sbjct: 622 CMHKLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792 >gi|296229001|ref|XP_002760089.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform 1 [Callithrix jacchus] Length = 1226 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 517 QTCEFNLIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K G + E+++ + GP H+P+F V++ SK+ A+Q+AA E +K Sbjct: 622 CMHKLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792 >gi|296211842|ref|XP_002752582.1| PREDICTED: RISC-loading complex subunit TARBP2-like isoform 2 [Callithrix jacchus] gi|296211844|ref|XP_002752583.1| PREDICTED: RISC-loading complex subunit TARBP2-like isoform 3 [Callithrix jacchus] Length = 345 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 Q + + + LQE K PEY VT SGP H FT+ + Sbjct: 120 RSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE- 178 Query: 198 LAPAQGMDCSKRAAEQVAAAEVL 220 G SK+ A++ AAA++L Sbjct: 179 RFIEIGSGTSKKLAKRNAAAKML 201 >gi|296211840|ref|XP_002752581.1| PREDICTED: RISC-loading complex subunit TARBP2-like isoform 1 [Callithrix jacchus] Length = 366 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 Q + + + LQE K PEY VT SGP H FT+ + Sbjct: 141 RSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE- 199 Query: 198 LAPAQGMDCSKRAAEQVAAAEVL 220 G SK+ A++ AAA++L Sbjct: 200 RFIEIGSGTSKKLAKRNAAAKML 222 >gi|302694007|ref|XP_003036682.1| hypothetical protein SCHCODRAFT_102832 [Schizophyllum commune H4-8] gi|300110379|gb|EFJ01780.1| hypothetical protein SCHCODRAFT_102832 [Schizophyllum commune H4-8] Length = 1489 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 38/244 (15%), Positives = 78/244 (31%), Gaps = 27/244 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++ IG LL ALTH++ + S +YER+EFLGD +L + ++ + Sbjct: 1213 IDGVQSVIGQKLNKPELLALALTHAN-NSSPLGNYERIEFLGDALLDFQVVEYVYRKYTQ 1271 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV------------------ 107 L++ +++V + + E L + S + Sbjct: 1272 QPPSVLTLLKSAMVGNSPLAAICAESGLYRHLHQKSHQIQQSINTYLTALQKAKQKEYAA 1331 Query: 108 --------CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT 159 + +D+VES++ A+Y+ +E G + R + Sbjct: 1332 ADDDLRERGQYWFDALSDIVESIVGAIYISDDLEWTGVQQLFKHFLQPFYEKHIRMNTLA 1391 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + + + V + G A + A + A++ Sbjct: 1392 VHPTKILLELVQSQCCHKLELVKSASAGQTQCNVLLHGAVIASKTAVNGVLAARGASSIA 1451 Query: 220 LKRE 223 L + Sbjct: 1452 LNKL 1455 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 7/118 (5%) Query: 9 LEKRIG-YAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL-LFNHF 63 L K + F + LL ALT S + +YERLE GD L L S Sbjct: 979 LVKELNAIHFNHIIAEDLLHAALTTPSA--GFDRNYERLELYGDAFLKYLASLHLFVMSH 1036 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG+L L+S + + + L L SF+ + + + + Sbjct: 1037 HNDSEGKLHAARRPLISNQKLMECSLALGLPSFVIGKPFVIRFWGPANFRMNPPGGSA 1094 >gi|301767390|ref|XP_002919107.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2 [Ailuropoda melanoleuca] Length = 741 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 98 LSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|301767388|ref|XP_002919106.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1 [Ailuropoda melanoleuca] Length = 701 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 98 LSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|281341190|gb|EFB16774.1| hypothetical protein PANDA_007702 [Ailuropoda melanoleuca] Length = 718 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 88 LSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 130 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 239 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 283 >gi|74001569|ref|XP_544931.2| PREDICTED: similar to RNA-specific adenosine deaminase B1 isoform DRADA2a [Canis familiaris] Length = 746 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 143 LSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 185 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 294 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 338 >gi|311255463|ref|XP_003126242.1| PREDICTED: RISC-loading complex subunit TARBP2-like [Sus scrofa] Length = 366 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 217 Query: 216 AAEVL 220 AA++L Sbjct: 218 AAKML 222 >gi|149714845|ref|XP_001504584.1| PREDICTED: similar to TAR RNA binding protein 2 isoform 1 [Equus caballus] Length = 366 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 217 Query: 216 AAEVL 220 AA++L Sbjct: 218 AAKML 222 >gi|149714848|ref|XP_001504588.1| PREDICTED: similar to TAR RNA binding protein 2 isoform 3 [Equus caballus] gi|149714851|ref|XP_001504586.1| PREDICTED: similar to TAR RNA binding protein 2 isoform 2 [Equus caballus] Length = 345 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 138 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 196 Query: 216 AAEVL 220 AA++L Sbjct: 197 AAKML 201 >gi|119617124|gb|EAW96718.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_b [Homo sapiens] gi|119617125|gb|EAW96719.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_b [Homo sapiens] Length = 222 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 15 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 73 Query: 216 AAEVL 220 AA++L Sbjct: 74 AAKML 78 >gi|113912024|gb|AAI22654.1| TAR (HIV-1) RNA binding protein 2 [Bos taurus] Length = 319 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 217 Query: 216 AAEVL 220 AA++L Sbjct: 218 AAKML 222 >gi|19743838|ref|NP_004169.3| RISC-loading complex subunit TARBP2 isoform b [Homo sapiens] gi|85068512|ref|NP_599151.2| RISC-loading complex subunit TARBP2 isoform b [Homo sapiens] gi|332839227|ref|XP_003313704.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 2 [Pan troglodytes] gi|332839229|ref|XP_003313705.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 3 [Pan troglodytes] gi|119617123|gb|EAW96717.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_a [Homo sapiens] Length = 345 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 138 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 196 Query: 216 AAEVL 220 AA++L Sbjct: 197 AAKML 201 >gi|164448622|ref|NP_001069146.2| RISC-loading complex subunit TARBP2 [Bos taurus] gi|229891741|sp|Q0IIG6|TRBP2_BOVIN RecName: Full=RISC-loading complex subunit TARBP2 gi|296487914|gb|DAA30027.1| RISC-loading complex subunit TARBP2 [Bos taurus] Length = 366 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 217 Query: 216 AAEVL 220 AA++L Sbjct: 218 AAKML 222 >gi|159163844|pdb|2CPN|A Chain A, Solution Structure Of The Second Dsrbd Of Tar Rna-Binding Protein 2 Length = 89 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 17 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 75 Query: 216 AAEVL 220 AA++L Sbjct: 76 AAKML 80 >gi|30585201|gb|AAP36873.1| Homo sapiens TAR (HIV) RNA binding protein 2 [synthetic construct] gi|60653021|gb|AAX29205.1| TAR [synthetic construct] Length = 367 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 217 Query: 216 AAEVL 220 AA++L Sbjct: 218 AAKML 222 >gi|339909|gb|AAA36765.1| TAR RNA binding protein [Homo sapiens] Length = 345 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 138 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 196 Query: 216 AAEVL 220 AA++L Sbjct: 197 AAKML 201 >gi|7412848|gb|AAB50581.2| TAR RNA binding protein 2 [Homo sapiens] Length = 366 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 217 Query: 216 AAEVL 220 AA++L Sbjct: 218 AAKML 222 >gi|19743840|ref|NP_599150.1| RISC-loading complex subunit TARBP2 isoform a [Homo sapiens] gi|332839225|ref|XP_003313703.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 1 [Pan troglodytes] gi|209572714|sp|Q15633|TRBP2_HUMAN RecName: Full=RISC-loading complex subunit TARBP2; AltName: Full=TAR RNA-binding protein 2; AltName: Full=Trans-activation-responsive RNA-binding protein gi|13543405|gb|AAH05860.1| TAR (HIV-1) RNA binding protein 2 [Homo sapiens] gi|30583119|gb|AAP35804.1| TAR (HIV) RNA binding protein 2 [Homo sapiens] gi|60656097|gb|AAX32612.1| TAR RNA binding protein 2 [synthetic construct] gi|119617126|gb|EAW96720.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_c [Homo sapiens] gi|123993747|gb|ABM84475.1| Tar (HIV-1) RNA binding protein 2 [synthetic construct] gi|123994511|gb|ABM84857.1| Tar (HIV-1) RNA binding protein 2 [synthetic construct] gi|208967915|dbj|BAG73796.1| TAR (HIV-1) RNA binding protein 2 [synthetic construct] Length = 366 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 217 Query: 216 AAEVL 220 AA++L Sbjct: 218 AAKML 222 >gi|107904|pir||A38430 trans-activation-responsive RNA-binding protein - human (fragment) Length = 363 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 156 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 214 Query: 216 AAEVL 220 AA++L Sbjct: 215 AAKML 219 >gi|323126808|gb|ADX24105.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 79 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 8/73 (10%) Query: 7 STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58 LE+ + F + +LLE A TH+S ++ ++ ERLEFLGD +L L+IS Sbjct: 2 KKLEELLAASFDICFEDHTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEY 61 Query: 59 LFNHFDSAKEGEL 71 LF + ++ Sbjct: 62 LFAKYPKKQKVTC 74 >gi|170085495|ref|XP_001873971.1| predicted protein [Laccaria bicolor S238N-H82] gi|164651523|gb|EDR15763.1| predicted protein [Laccaria bicolor S238N-H82] Length = 367 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 SGP H R+TV ++G+ G SK+ A++ AA + G WT Sbjct: 320 EFSGPSHAGRWTVKCVVNGIPKGVGTGGSKQVAKEEAARQAYYAMG-WT 367 Score = 41.5 bits (95), Expect = 0.085, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 10/131 (7%) Query: 16 AFANRSLLEKALTHSSISHSYQ--------ESYERLEFLGDRILGLLISTLLFNHFDSAK 67 + L+ + TH S+ + + + ERL LG L + ++ +LFN K Sbjct: 39 KIHSSDLVLRVFTHKSLRRATRSSTNLDDFDDNERLTELGKAALNVAVAHVLFNKRPMLK 98 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 E+S + ++S E + +L +R +L + + + + +Y Sbjct: 99 PSEMSSQHKHILSDENINNWVTFYNLRMKLRCHPNLYPRLN--TPQETCSIFYAYVGGVY 156 Query: 128 LDGGIEVAGTF 138 + G E + Sbjct: 157 AESGQEAVREW 167 >gi|194912620|ref|XP_001982542.1| GG12877 [Drosophila erecta] gi|190648218|gb|EDV45511.1| GG12877 [Drosophila erecta] Length = 632 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 2/108 (1%) Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 S I + + + + K K R + Sbjct: 11 QHPVSATSDINMNGYNRKMPQKRCYEMPKYADPKKKMCKERIPQPKNTVAMLNELRHGLI 70 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 71 YK-LESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|149639039|ref|XP_001507858.1| PREDICTED: similar to adenosine deaminase [Ornithorhynchus anatinus] Length = 699 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +YK+ ++GP H P F + VE++G A +G +K+ A+ AA + L+ Sbjct: 93 QYKLLSQTGPVHAPMFVMAVEVNGQAF-EGTGPTKKKAKLHAAEKALR 139 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 Y+ SG H F + V + G +G +K+ A+ AA L Sbjct: 248 YEFLSESGESHAKNFVMAVAVDGQNF-EGSGRNKKLAKARAAQSALASL 295 >gi|260785891|ref|XP_002587993.1| hypothetical protein BRAFLDRAFT_125391 [Branchiostoma floridae] gi|229273149|gb|EEN44004.1| hypothetical protein BRAFLDRAFT_125391 [Branchiostoma floridae] Length = 376 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + L K ++ ++V SGP H F ++ A+G K+ +++ A Sbjct: 281 KPEITLVYEIARKRNMSVSFEVVKESGPPHMKTFVTSCKVGD-FVAEGEGNGKKVSKKRA 339 Query: 216 AAEVLKREGIW 226 A +VL++ + Sbjct: 340 AQKVLEQLKVL 350 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 1/72 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + L + P+YK+ +GP H FT+ + ++ S Sbjct: 67 NMANPKEKTPMCLINELARYNKIQPQYKLITETGPAHQKTFTISLTLNDKTW-SAEGSSL 125 Query: 209 RAAEQVAAAEVL 220 + A+ AA++ L Sbjct: 126 KKAQHAAASKAL 137 Score = 43.8 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F V + I G +++ A AAA+ LK Sbjct: 217 KTFYVSLTIGNREF-IGEGRTRQQARHNAAAKALKVLK 253 >gi|291414148|ref|XP_002723321.1| PREDICTED: interleukin enhancer binding factor 3 [Oryctolagus cuniculus] Length = 896 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 323 AFGQLHKVLGMDPLPSKLPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 382 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 383 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 441 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 442 ASGPSKKTAKLHVAVKVLQDMGLPT 466 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 545 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 573 >gi|296237713|ref|XP_002763865.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2-like [Callithrix jacchus] Length = 399 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFMMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAEAMLLQLG 342 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 52/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFLGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|242021000|ref|XP_002430935.1| tar RNA binding protein, putative [Pediculus humanus corporis] gi|212516153|gb|EEB18197.1| tar RNA binding protein, putative [Pediculus humanus corporis] Length = 335 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 H+P F V ++ L G SKR A+ AA +LK+ + Sbjct: 33 HNPLFIYRVHVNDL-FEDGKGKSKREAKHNAAENMLKKLNV 72 Score = 44.9 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + L+E+ P Y+V SG H F +V +S G+ + Sbjct: 87 YDEMDPGENYVGMLKEYCLMNPYPEPTYQVEEESGQPHCKVFKMVCFVS-QLQEYGISST 145 Query: 208 KRAAEQVAAAEVLKREG 224 K+ A+Q+ A ++L+R Sbjct: 146 KKGAKQIGAFKMLERLK 162 >gi|194213163|ref|XP_001491016.2| PREDICTED: interleukin enhancer binding factor 3, 90kDa [Equus caballus] Length = 702 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNETPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|71896437|ref|NP_001026112.1| double-stranded RNA-binding protein Staufen homolog 2 [Gallus gallus] gi|53130432|emb|CAG31545.1| hypothetical protein RCJMB04_7n10 [Gallus gallus] Length = 472 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V+I G G +K+ A++ Sbjct: 378 MNPISRLAQIQQAKKEKEPEYVLLSERGMPRRREFVMQVKI-GNEITTGTGPNKKIAKRN 436 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 437 AAEAMLLQLG 446 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 1/74 (1%) Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 + L + P+YK+ GP H FTV + + + Sbjct: 70 QDNMANPKEKTPMCLVNELARFNRIQPQYKLLNERGPAHAKMFTVQLTLGEQTW-EAEGS 128 Query: 207 SKRAAEQVAAAEVL 220 S + A+ AA++ L Sbjct: 129 SIKKAQHAAASKAL 142 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 300 IKESGPPHMKSFVTRVTV-GEFTAEGEGNSKKLSKERAAMSVLQELK 345 Score = 43.4 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 216 KIFYVQLTVGNSEFF-GEGKTRQAARHNAAMKALQAL 251 >gi|170586588|ref|XP_001898061.1| Double-stranded RNA binding motif family protein [Brugia malayi] gi|158594456|gb|EDP33040.1| Double-stranded RNA binding motif family protein [Brugia malayi] Length = 790 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 29/93 (31%) Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G + + + + EYK+ SGP H Sbjct: 25 WWGQQFTEEEISPTKYVYNYSQIDANHQRTPMCRIAELARYNKIRHEYKLMDESGPAHKK 84 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +FTV + ++ G S + A+Q AA L Sbjct: 85 QFTVSLVLTPDQVFYGKGASIKKAQQSAAETAL 117 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 32/80 (40%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + + L + A+ P++++ G F + V +G+ Sbjct: 434 MKMNPEYGHQINPVSRLMQIMQARKQNEPKFQLVAERGQSRYKEFVMEVICDDGLRCEGI 493 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA VL R G Sbjct: 494 GPNKKLAKRAAAEAVLARIG 513 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEV 219 + E+ V GP HD + + ++ + A G SK+ A+Q A + + Sbjct: 335 HECALHMRMNVEFLVLKEEGPAHDRHYLLRCKLISAERVISADGEGSSKKIAKQNACSLM 394 Query: 220 LKRE 223 L + Sbjct: 395 LTKL 398 >gi|54020805|ref|NP_001005648.1| interleukin enhancer-binding factor 3 [Xenopus (Silurana) tropicalis] gi|82183774|sp|Q6GL57|ILF3_XENTR RecName: Full=Interleukin enhancer-binding factor 3 gi|49257941|gb|AAH74653.1| interleukin enhancer binding factor 3, 90kDa [Xenopus (Silurana) tropicalis] Length = 698 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + +YK+ ++GP H P FT+ VE+ + SK+ A+ Sbjct: 399 EPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDEKTF-EASGPSKKTAKLH 457 Query: 215 AAAEVLKREGIWT 227 A +VL+ G+ T Sbjct: 458 VAVKVLQDMGLPT 470 Score = 35.7 bits (80), Expect = 4.5, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G+ QG + Sbjct: 540 ISETGGSHDKRFVMEVEVDGVKF-QGSGSN 568 >gi|238586858|ref|XP_002391299.1| hypothetical protein MPER_09293 [Moniliophthora perniciosa FA553] gi|215455774|gb|EEB92229.1| hypothetical protein MPER_09293 [Moniliophthora perniciosa FA553] Length = 267 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 19/216 (8%) Query: 18 ANRSLLEKALTHSSISHSYQES---------YERLEFLGDRILGLLISTLLFNHFDSAKE 68 + ++++A TH + YQ+ +L +G+ ++GL + + + Sbjct: 2 NSTDIIQQACTHQTFLQLYQKHKPDDPAPATNAQLAAIGNSLMGLFATEFVRASYPYLPT 61 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSS--DLRKDVCSFMTSIQADVVESLIAAL 126 L ++ V TC+ VA+E+ +R + + + +L A + Sbjct: 62 RVLKAAVSAHVGPLTCANVAQEMGAVPLLRWHRSRGTLTKPGTLHSDALTSIPRALTAFV 121 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y Q ++ D K L E PE + T R + Sbjct: 122 YRKRS------LPSGRAIQVDIRGMLKFLDPKKALLEMVEKYGRERPEIQETGRY--SNS 173 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F V + +G S + AE AA + L R Sbjct: 174 PVFVVGIYSGEEQLGEGFGSSLKMAEYRAAEDALHR 209 >gi|114675403|ref|XP_001166543.1| PREDICTED: interleukin enhancer binding factor 3 isoform 9 [Pan troglodytes] Length = 896 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 1/119 (0%) Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + AA E K++ K + + + Sbjct: 345 KKPKNENPVDYTGKPAAAMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQ 404 Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 405 LKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPT 462 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 546 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 574 >gi|73986760|ref|XP_868135.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 7 [Canis familiaris] Length = 888 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ Sbjct: 398 EPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAKLH 456 Query: 215 AAAEVLKREGIWT 227 A +VL+ G+ T Sbjct: 457 VAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576 >gi|73986762|ref|XP_868138.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 8 [Canis familiaris] Length = 900 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ Sbjct: 398 EPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAKLH 456 Query: 215 AAAEVLKREGIWT 227 A +VL+ G+ T Sbjct: 457 VAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576 >gi|73986758|ref|XP_868130.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform a isoform 6 [Canis familiaris] Length = 873 Score = 59.2 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + +YK+ ++GP H P FT+ VE+ G + + SK+ A+ Sbjct: 371 EPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAKLH 429 Query: 215 AAAEVLKREGIWT 227 A +VL+ G+ T Sbjct: 430 VAVKVLQDMGLPT 442 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 521 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 549 >gi|315051166|ref|XP_003174957.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893] gi|311340272|gb|EFQ99474.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893] Length = 1425 Score = 58.8 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S +E I Y+F R+LL +L+H S + +Y+RLEFLGD IL +++ LF Sbjct: 1142 LSKIEPLIDYSFTKRALLAASLSHPS-NLISGMTYQRLEFLGDSILDNVVTRALFRCDKE 1200 Query: 66 AKEGELSVRFNSLVSAETCSQVAR 89 ++ + +LV+A+ + + Sbjct: 1201 IPHQDMHLIRTALVNADFLAFLCM 1224 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 4/95 (4%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +T+ IG F + L+ A+T +S +Y+RLEFLGD L L S L Sbjct: 959 NTILSSIG--FKDIKLVLTAITATSARE--NTNYQRLEFLGDSALKLHASMQLLADHPIW 1014 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 EG LS + +S+VS + A + L FI + Sbjct: 1015 HEGILSKKKDSIVSNSRLWKAAVDTGLDRFILTTC 1049 >gi|317156821|ref|XP_001826035.2| hypothetical protein AOR_1_660054 [Aspergillus oryzae RIB40] Length = 939 Score = 58.8 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE +GY F+++SL +++TH S Y SY RL FLG I+ L++ L Sbjct: 700 DLEALLGYTFSDKSLAIESMTHPSCVGLYGTASYRRLSFLGAGIIELVVVRYLHRQKSFT 759 Query: 67 KEGELSVRFNSLVSAETCSQVARELDL 93 L +++ + + + Sbjct: 760 SSKRLQSLKSAVTNNMFLAFLCLTFHW 786 >gi|238492895|ref|XP_002377684.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] gi|220696178|gb|EED52520.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] Length = 790 Score = 58.8 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE +GY F+++SL +++TH S Y SY RL FLG I+ L++ L Sbjct: 551 DLEALLGYTFSDKSLAIESMTHPSCVGLYGTASYRRLSFLGAGIIELVVVRYLHRQKSFT 610 Query: 67 KEGELSVRFNSLVSAETCSQVARELDL 93 L +++ + + + Sbjct: 611 SSKRLQSLKSAVTNNMFLAFLCLTFHW 637 >gi|83774779|dbj|BAE64902.1| unnamed protein product [Aspergillus oryzae] Length = 1256 Score = 58.8 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE +GY F+++SL +++TH S Y SY RL FLG I+ L++ L Sbjct: 1017 DLEALLGYTFSDKSLAIESMTHPSCVGLYGTASYRRLSFLGAGIIELVVVRYLHRQKSFT 1076 Query: 67 KEGELSVRFNSLVSAETCSQVARELDL 93 L +++ + + + Sbjct: 1077 SSKRLQSLKSAVTNNMFLAFLCLTFHW 1103 >gi|313212467|emb|CBY36441.1| unnamed protein product [Oikopleura dioica] Length = 2196 Score = 58.8 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 1/109 (0%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L+ + Y F L AL + ++++ERLEFLGD +L L+ L+N + Sbjct: 1891 IDELQNELEYTFKTPHLCRLALAKKKYTKDPKDNFERLEFLGDAVLDYLVVDELYNRRSA 1950 Query: 66 A-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 A G+L+ S+ S +A + L + + KD S M Sbjct: 1951 ALDSGQLTDLKQSITSNNLFGSLAFCMGLPQSTLMKASAAKDHISCMYK 1999 Score = 44.5 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 66/209 (31%), Gaps = 20/209 (9%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 SLL +ALT + + + ERLEF GD + + + +L+ + +GEL+ + + Sbjct: 1671 PSLLLRALTQPTAND--FFNLERLEFFGDSFIKIACTRMLYEKYAHFSDGELTSARGAYI 1728 Query: 80 SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 S ++ + L S +++ + S TS + + Sbjct: 1729 SNANFLKLLKLRLSDGSCLQIPRYMNCYDNSRKTSGVIRAPGYVYSYNENFCPNAQPWYK 1788 Query: 139 VDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 +D + + ++ + K + D V I Sbjct: 1789 LDDNGDETEIFPPMTDCSQFVSENFRDTHFNYMFFDSKDKRVDKKTAD-----VVESLIG 1843 Query: 197 GLAPAQGMDCSKRAAEQVAAA--EVLKRE 223 G E++AA +L Sbjct: 1844 AYLVTGG--------EKMAARFVIMLNNL 1864 >gi|297481628|ref|XP_002692232.1| PREDICTED: adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Bos taurus] gi|296481330|gb|DAA23445.1| adenosine deaminase, RNA-specific, B2 [Bos taurus] Length = 785 Score = 58.8 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++++ ++GP H P F V V+++GL +G +K+ A+ AA L+ Sbjct: 141 QFRMVSQTGPVHAPIFAVAVDVNGLTF-EGTGPTKKKAKMRAAELALR 187 >gi|296232891|ref|XP_002807844.1| PREDICTED: LOW QUALITY PROTEIN: interleukin enhancer-binding factor 3-like [Callithrix jacchus] Length = 895 Score = 58.8 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%) Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 Q+ + L + K+ ++Q + E Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 K++ K + + + +YK+ ++GP H P FT+ VE+ G + + Sbjct: 386 KKKKIQKKEEKAEAPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444 Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227 SK+ A+ A +VL+ G+ T Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572 >gi|300797105|ref|NP_001179517.1| double-stranded RNA-specific editase B2 [Bos taurus] Length = 734 Score = 58.8 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++++ ++GP H P F V V+++GL +G +K+ A+ AA L+ Sbjct: 141 QFRMVSQTGPVHAPIFAVAVDVNGLTF-EGTGPTKKKAKMRAAELALR 187 >gi|255633098|gb|ACU16904.1| unknown [Glycine max] Length = 188 Score = 58.8 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 TL+K++GY F + LL +A+TH+S S + + LG ++ +S L + Sbjct: 45 LETLQKQLGYTFKSIDLLRRAVTHASFSEE---NNKAFAILGASVIETSVSFHLLSRDVD 101 Query: 66 AKEGELSVRFNSLVSAETCS 85 EL+ R + + + ++ Sbjct: 102 LSSKELNRRLSQITNVDSSC 121 >gi|242022991|ref|XP_002431920.1| tar RNA binding protein, putative [Pediculus humanus corporis] gi|212517264|gb|EEB19182.1| tar RNA binding protein, putative [Pediculus humanus corporis] Length = 318 Score = 58.8 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE P Y++T G H+ +FT+ + G SK+ A++ A Sbjct: 104 NPIGTLQEMCICHRWPPPVYEMTCEEGLPHERQFTMACIVF-KYREVGSGKSKKLAKRQA 162 Query: 216 AAEVLKRE 223 A ++ ++ Sbjct: 163 AHKMWEKL 170 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 L + ++ G TP+Y++ G H+P F V ++ A G SK+ A+ Sbjct: 1 MPSKTPVSLLQEMLSRQGTTPKYELVQIEGAIHEPTFRYRVTVADNV-AIGTGRSKKVAK 59 Query: 213 QVAAAEVLKREG 224 AA +L + Sbjct: 60 HTAAKNLLDKLN 71 >gi|109096950|ref|XP_001106036.1| PREDICTED: RISC-loading complex subunit TARBP2 [Macaca mulatta] Length = 366 Score = 58.8 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 +F + K PEY VT SGP H FT+ + G SK+ Sbjct: 153 PQQFEGNPVGGSAGLVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKK 211 Query: 210 AAEQVAAAEVL 220 A++ AAA++L Sbjct: 212 LAKRNAAAKML 222 >gi|302790644|ref|XP_002977089.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii] gi|300155065|gb|EFJ21698.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii] Length = 299 Score = 58.8 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + + + G + +GP H+ F VEI G+ G SK+ AE AA Sbjct: 88 CKNVLQEYAQRNGFSLPIYQIEITGPSHNSVFAATVEIGGVLYKGGTAKSKKEAEVKAAR 147 Query: 218 EVLKREG 224 + Sbjct: 148 TAILAIK 154 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLKRE 223 T + + G H PRF VE++G+ + +AAE AA + L Sbjct: 16 TVPQYDSIKQGLPHLPRFQASVEVNGVKYESEDGFPNLKAAEHSAAKKALDSL 68 >gi|159163524|pdb|1X49|A Chain A, Solution Structure Of The First Dsrm Domain In Interferon- Induced, Double-Stranded Rna-Activated Protein Kinase Length = 97 Score = 58.8 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 21/57 (36%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GV YK SGP HD RFT V I + SK+ A AA Sbjct: 21 NKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLA 77 >gi|224613372|gb|ACN60265.1| Double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar] Length = 416 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + ++V +GP H F V V + G +G SK+ A+++AA VL+ Sbjct: 1 NMPVNFEVLKEAGPPHMKSFMVCVSV-GEFCGEGEGKSKKIAKKLAATAVLEEL 53 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V + G A+GM SK+ A++ Sbjct: 91 MNPISRLAQIQQAKKEKEPEYSMMTERGLPRRREFVMQVTVCGHC-AEGMGPSKKVAKRN 149 Query: 215 AAAEVLKREG 224 AA ++L+ G Sbjct: 150 AAEKMLELLG 159 >gi|223648210|gb|ACN10863.1| Double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar] Length = 706 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + ++V +GP H F V V + G +G SK+ A+++AA VL+ Sbjct: 291 NMPVNFEVLKEAGPPHMKSFMVCVSV-GEFCGEGEGKSKKIAKKLAATAVLEEL 343 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V + G A+GM SK+ A++ Sbjct: 381 MNPISRLAQIQQAKKEKEPEYSMMTERGLPRRREFVMQVTVCGHC-AEGMGPSKKVAKRN 439 Query: 215 AAAEVLKREG 224 AA ++L+ G Sbjct: 440 AAEKMLELLG 449 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/98 (12%), Positives = 27/98 (27%), Gaps = 2/98 (2%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 + +E+ + K + + + P Sbjct: 158 CMTHTVELNAFCMKLGMKPMYKPIDPYPGMRPSNFNYNIRAPGPYQRSMQQYYYPFPPVG 217 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + + I G G +++ A+ AAA+ LK Sbjct: 218 PVLYHMELNIGGQQF-HGKGRTRQLAKHDAAAKALKTL 254 Score = 38.4 bits (87), Expect = 0.69, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 1/65 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + L + PEYK+ GP H F+V + + + S Sbjct: 68 NMANPKEKTPMCLVNELARFNKIQPEYKLLCEQGPAHSKIFSVRLSLGDQHW-EAEGTSI 126 Query: 209 RAAEQ 213 + A+ Sbjct: 127 KKAQH 131 >gi|47229756|emb|CAG06952.1| unnamed protein product [Tetraodon nigroviridis] Length = 665 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V ++G + A+GM SK+ A++ Sbjct: 380 MNPISRLAQIQQAKKEKEPEYSMVTERGLPRRREFVMQVTVNGQS-AEGMGPSKKVAKRN 438 Query: 215 AAAEVLKREG 224 AA ++L+ G Sbjct: 439 AAEKMLELLG 448 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 1/73 (1%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + L + P+YK+ GP H F+V + + + S Sbjct: 66 PNMANPKEKTPMCLVNELARFNKIQPQYKLLCEQGPAHSKIFSVQLTLGDQ-YWEAEGPS 124 Query: 208 KRAAEQVAAAEVL 220 + A+ AAA L Sbjct: 125 IKKAQHSAAASAL 137 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 4/81 (4%) Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 +K G + ++ + + Y GP + + + + G Sbjct: 179 YKPVDPYPGMRHPNFHYNIRNPGLYQRSMQQYYYPFPPVGPI---LYHMELSVGGQQF-I 234 Query: 203 GMDCSKRAAEQVAAAEVLKRE 223 G +++ A+ AAA+ LK Sbjct: 235 GKGRTRQLAKNDAAAKALKVL 255 >gi|73968131|ref|XP_863799.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 6 [Canis familiaris] Length = 656 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 1/112 (0%) Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 + + K + K + +Y Sbjct: 329 HHALRLSAFGQIYKVLEMDPLPSSKPFQKYSWSVTDKEGDHPDLMNALMRLNQIRPGLQY 388 Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 K+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ G T Sbjct: 389 KLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYPT 439 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 514 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 542 >gi|311252821|ref|XP_003125284.1| PREDICTED: interferon-induced, double-stranded RNA-activated protein kinase-like [Sus scrofa] Length = 242 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 20/42 (47%) Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G D +F +I G+ +K+ A+Q+AA + ++ Sbjct: 124 GEDGPEKFHYKCKIGRKVYGSGVGSTKQEAKQLAAKQAYEKL 165 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 18/45 (40%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K V +Y+ ++GP H+ RFT V I + S Sbjct: 15 NKYQQKNDVILKYRELCKTGPAHNLRFTYQVVIDEKEFPKAEGRS 59 >gi|291397874|ref|XP_002715382.1| PREDICTED: adenosine deaminase, RNA-specific [Oryctolagus cuniculus] Length = 1150 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K G + E+++ + GP HDP+F V + SK+ A+Q+AA E +K Sbjct: 569 CVHKLGSSCEFRLLSKEGPAHDPKFQYCVAVGSQTFPTASAPSKKVAKQMAAEEAMKAL 627 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V ISG SK+ A+Q AA + Sbjct: 464 QTCEFNLIEQSGPPHEPRFKFQVVISGREFPPAEAGSKKVAKQDAAMKA 512 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 694 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 739 >gi|326917772|ref|XP_003205170.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2-like, partial [Meleagris gallopavo] Length = 479 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G G +K+ A++ Sbjct: 378 MNPISRLAQIQQAKKEKEPEYVLLSERGMPRRREFVMQVKV-GNEITTGTGPNKKIAKRN 436 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 437 AAEAMLLQLG 446 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 1/74 (1%) Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 + L + P+YK+ GP H FTV + + + Sbjct: 70 QDNMANPKEKTPMCLVNELARFNRIQPQYKLLNERGPAHAKMFTVQLTLGEQTW-EAEGS 128 Query: 207 SKRAAEQVAAAEVL 220 S + A+ AA++ L Sbjct: 129 SIKKAQHAAASKAL 142 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 300 IKESGPPHMKSFVTRVTV-GEFTAEGEGNSKKLSKKRAAMSVLQELK 345 >gi|91091212|ref|XP_966668.1| PREDICTED: similar to tar RNA binding protein [Tribolium castaneum] gi|270013108|gb|EFA09556.1| hypothetical protein TcasGA2_TC011666 [Tribolium castaneum] Length = 384 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K + LQE ++ P Y++ G H+ +FT+ ++ G S Sbjct: 159 PFDDKVMGNPIGWLQEMCMSRRWPPPSYEMEHEEGLPHERQFTIACQVL-KFKEVGTGKS 217 Query: 208 KRAAEQVAAAEVLKRE 223 K+ A+++AA ++ + Sbjct: 218 KKLAKRMAAHKMWQAL 233 Score = 39.5 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 17/36 (47%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 TP+Y++ G H+P F V I+ A G S Sbjct: 80 TPKYELVQIEGAIHEPIFRYRVFINNDLVATGTGRS 115 >gi|317419872|emb|CBN81908.1| Double-stranded RNA-binding protein Staufen homolog 2 [Dicentrarchus labrax] Length = 618 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V+++ A G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPEYLLLSERGMPRRREFIMQVKVNNEV-ATGTGPNKKVAKRN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 50.7 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 55/163 (33%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + ++++S + + T A + Sbjct: 113 YRPLDPKPMPNYRANYNFRGMFNQRYHYPVPKIFYVQLSVGSHEFIGEGRTRQAARHSAA 172 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L ++ + G ++ L K ++ ++V S Sbjct: 173 MKALQALRNEPIPERP-PQSPEEKGETEEGSDASKSEISLVYEIALKRNLSVNFEVLKES 231 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA +L+ Sbjct: 232 GPPHMKSFLTRVTV-GEFSAEGEGNSKKLSKKRAALSILQDLK 273 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L + P+YK+ GP H FTV + + + S + Sbjct: 1 MANPKEKTPMCLVNELARFNRIQPQYKLLNERGPAHAKIFTVQLTLGEQVW-EAEGTSIK 59 Query: 210 AAEQVAAAEVL 220 A+ AA+ L Sbjct: 60 KAQHSTAAKAL 70 >gi|301108992|ref|XP_002903577.1| Dicer-like 1 (DCL1) [Phytophthora infestans T30-4] gi|262097301|gb|EEY55353.1| Dicer-like 1 (DCL1) [Phytophthora infestans T30-4] Length = 1664 Score = 58.4 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 37/116 (31%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHS----------------------------- 35 R L++R+ Y F N+ LL +A+TH S+ Sbjct: 1402 RLMLLQQRLKYTFRNKRLLLEAVTHPSVGQLVLHIDQMDANGADGNADGNAGGDIEVMSR 1461 Query: 36 --------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 ++ YERLE+LGD ++ L + F +D G LS ++ VS + Sbjct: 1462 SQKKKKTVWKGDYERLEYLGDALIEYLTLSYAFLMYDKWLPGSLSQWKSATVSNDA 1517 Score = 40.3 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 25/174 (14%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF-NHF 63 + S L +IG + +LL+ A T + +YERLE LGD L L S ++ Sbjct: 1203 QISHLMGKIGLEL-DMTLLDDATT--------KPAYERLEILGDTFLKLETSWYMYEQRK 1253 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT----------- 112 D +EG+L+ ++ + +Q A L ++ +++ + Sbjct: 1254 DIYQEGQLTQLRRDIIRNDRLNQFALAARLHHYMLYPAEVEQHPFQCWKPSCMGKTPDPV 1313 Query: 113 ----SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 ADV+E++ A + G + A F+ Sbjct: 1314 VAPAKWIADVLEAITGAYLVGQGEKGARYFLKWIGVTVLEHPSTNFARPFYPDC 1367 >gi|269966648|ref|ZP_06180727.1| hypothetical protein VMC_21570 [Vibrio alginolyticus 40B] gi|269828715|gb|EEZ82970.1| hypothetical protein VMC_21570 [Vibrio alginolyticus 40B] Length = 445 Score = 58.4 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 1/105 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + ++ L + G + K LQE+A ++ P+Y V Sbjct: 75 QVVMQLLGTSWVMNQIGWLYKLAQTLDIRLDASNEKPMKMVLQEYAQSRKLQAPQYDVVE 134 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H+ F+V I A G SK+ A + AA ++ ++ Sbjct: 135 ISGPQHNQVFSVQCSIVNEK-AVGSGNSKKKASEDAAIKLYQKLN 178 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 62/197 (31%), Gaps = 14/197 (7%) Query: 40 YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 + L LG + +IS L + + + L+ E + Sbjct: 246 NKTLAQLGVYLQQAIISRELIMKCIESDDWSIGKIHAGLLRELVSDDFYNEFTWLNTKIW 305 Query: 100 SSDLRKDVCS-FMTSIQADVVESLIAALYLDGGIEVAG------------TFVDKYWKQR 146 + + S S V+ +L YL E + Sbjct: 306 IEPFSRRIPSGEQGSYINSVIRALYGLSYLSMFEENFCAPDIDKVMRSRPFKQIRESLNN 365 Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 K +D+KT+LQE A + P Y++ G +H+ F V +G G Sbjct: 366 DKYINKSGKDSKTQLQEVAQDLKLLLPIYEIAQTEGEEHNLIFKVKCSFNGQFTF-GEGT 424 Query: 207 SKRAAEQVAAAEVLKRE 223 S A Q AA +L++ Sbjct: 425 SFNVASQQAAMVMLQKI 441 >gi|297851136|ref|XP_002893449.1| hypothetical protein ARALYDRAFT_472903 [Arabidopsis lyrata subsp. lyrata] gi|297339291|gb|EFH69708.1| hypothetical protein ARALYDRAFT_472903 [Arabidopsis lyrata subsp. lyrata] Length = 190 Score = 58.4 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 4/137 (2%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +TL+ +IGY F N +LL +A+TH+S S + + L G I+ +S Sbjct: 46 DLATLQTQIGYKFNNTNLLRRAMTHASFSQE---NNKALSIFGTNIIETSVSLQFLAKDI 102 Query: 65 SAKEGELSVRFNSLVS-AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 L + + +C+ L L IRVS + + + + ++ Sbjct: 103 DISSKALRRLIAQVSNVESSCALDGDRLGLGKIIRVSPKTDASNSAILCAGFRAIFGAIA 162 Query: 124 AALYLDGGIEVAGTFVD 140 + V Sbjct: 163 IDTGMVDEAIKVFWKVH 179 >gi|260835858|ref|XP_002612924.1| hypothetical protein BRAFLDRAFT_227842 [Branchiostoma floridae] gi|229298306|gb|EEN68933.1| hypothetical protein BRAFLDRAFT_227842 [Branchiostoma floridae] Length = 280 Score = 58.4 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++K +SGP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 53 QFKFVSQSGPVHAPEFIMSVEVNGQTF-EGRGGTKKKAKLHAAEQALR 99 >gi|301775807|ref|XP_002923310.1| PREDICTED: RISC-loading complex subunit TARBP2-like [Ailuropoda melanoleuca] Length = 366 Score = 58.4 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGSGTSKKLAKRNA 217 Query: 216 AAEVL 220 AA++L Sbjct: 218 AAKML 222 >gi|291389267|ref|XP_002711070.1| PREDICTED: TAR RNA binding protein 2 [Oryctolagus cuniculus] Length = 366 Score = 58.4 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGSGTSKKLAKRNA 217 Query: 216 AAEVL 220 AA++L Sbjct: 218 AAKML 222 >gi|281341836|gb|EFB17420.1| hypothetical protein PANDA_012447 [Ailuropoda melanoleuca] Length = 350 Score = 58.4 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE K PEY VT SGP H FT+ + G SK+ A++ A Sbjct: 143 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGSGTSKKLAKRNA 201 Query: 216 AAEVL 220 AA++L Sbjct: 202 AAKML 206 >gi|225714608|gb|ACO13150.1| Interferon-inducible double stranded RNA-dependent protein kinase activator A homolog [Lepeophtheirus salmonis] Length = 334 Score = 58.4 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 33/84 (39%) Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + + ELQE + P Y+V+ G H+ F +V + Sbjct: 107 QNCRDYGDYDDGIPGNPVGELQELCMNRRMQPPTYEVSREEGQPHERSFVLVCIVGSKYR 166 Query: 201 AQGMDCSKRAAEQVAAAEVLKREG 224 G SK+ A++ AA ++L + Sbjct: 167 ESGNGKSKKLAKRQAAYKMLTKLK 190 >gi|321470822|gb|EFX81797.1| hypothetical protein DAPPUDRAFT_211106 [Daphnia pulex] Length = 605 Score = 58.4 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G H P +T V I +G SK+ A+ AA L++ Sbjct: 140 VKEEGSPHLPIYTARVVIGDQPF-EGTGSSKKQAKNEAAQAALQK 183 >gi|114326369|ref|NP_001041600.1| interferon-induced, double-stranded RNA-activated protein kinase [Canis lupus familiaris] gi|62002572|gb|AAX58777.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Canis lupus familiaris] Length = 532 Score = 58.4 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 21/57 (36%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K +Y + GP H+ RFT I + SK+ A AA L+ Sbjct: 19 QKHRKVLKYNELSKEGPAHNLRFTFQAIIDEREYPEAEGKSKKEARNTAAKLALEIL 75 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E GP+ RF +I G +K+ A+ +AA ++ Sbjct: 119 VNYEQWELKDCGPE---RFHCRCKIGQKEYDIGKGATKQEAKHLAAKFAYEQI 168 >gi|73953912|ref|XP_868235.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241) isoform 4 [Canis familiaris] Length = 133 Score = 58.4 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 21/57 (36%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + K GP H +TV V G G S + AE AA + L++ Sbjct: 36 WASQSFHSKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 92 >gi|291414566|ref|XP_002723530.1| PREDICTED: RNA-specific adenosine deaminase B1 isoform 2 [Oryctolagus cuniculus] Length = 715 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G A +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQAF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|291414564|ref|XP_002723529.1| PREDICTED: RNA-specific adenosine deaminase B1 isoform 1 [Oryctolagus cuniculus] Length = 701 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G A +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFVMSVEVNGQAF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|16331355|ref|NP_442083.1| ribonuclease III [Synechocystis sp. PCC 6803] gi|2500555|sp|Q55637|RNC2_SYNY3 RecName: Full=Ribonuclease 3 2; AltName: Full=Ribonuclease III 2; Short=RNase III 2 gi|1001526|dbj|BAA10153.1| ribonuclease III [Synechocystis sp. PCC 6803] Length = 244 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 78/203 (38%), Gaps = 10/203 (4%) Query: 5 RYSTLEKRIGY---AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +R+G + +L++ ALTH+S S +++Y++LEF+GD ++ L + +L Sbjct: 10 QLKALLRRLGLTDNTPVDWNLVDLALTHAS--QSPEQNYQQLEFVGDAVVRLASAEVLMK 67 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 H+ GE+S LVS T + L F+ ++ + D ++ + Sbjct: 68 HYPQTSVGEMSALRAILVSDRTLAGWGELYGLDRFLWITPAVLADKNGRVSLMADSFEAL 127 Query: 122 LIAALYLDGGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 L A G + + ++ ++ + + AH K + Sbjct: 128 LGALYLSVGDLSLIRPWLSEHLLAKATEIRQDPALHNYKEALQAWTQAHYKCLPEYRVEP 187 Query: 178 TFRSGPDHDPRFTVVVEISGLAP 200 ++ P F V + Sbjct: 188 LDQNLPQQSG-FQATVWLGDQPL 209 >gi|297462872|ref|XP_002702377.1| PREDICTED: adenosine deaminase, RNA-specific, B1 (RED1 homolog rat) [Bos taurus] gi|297471374|ref|XP_002685172.1| PREDICTED: adenosine deaminase, RNA-specific, B1 (RED1 homolog rat) [Bos taurus] gi|296490897|gb|DAA33010.1| adenosine deaminase, RNA-specific, B1 [Bos taurus] Length = 748 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y + ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 94 QYTLLSQTGPVHAPLFLMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 249 YDFLSESGESHAKNFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293 >gi|225457085|ref|XP_002280078.1| PREDICTED: similar to NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III [Vitis vinifera] gi|297733813|emb|CBI15060.3| unnamed protein product [Vitis vinifera] Length = 183 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 +L TL+K+IGY F + LL +A+THSS S + + L LG + +S Sbjct: 38 SLALETLQKQIGYTFQSIGLLRRAMTHSSFSEE---NNKALSILGASTIETSVSLQYLKK 94 Query: 63 FDSAKEGELSVRFNSLVSAETCS 85 A +L+ R + + E+ Sbjct: 95 DIEASAKDLNRRISEISQVESSC 117 >gi|326931869|ref|XP_003212046.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1-like isoform 2 [Meleagris gallopavo] Length = 684 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 289 TKESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAIAVLEELK 334 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G+ A+GM +K+ A++ Sbjct: 369 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GVHTAEGMGTNKKVAKRN 427 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 428 AAENMLEILG 437 >gi|326931867|ref|XP_003212045.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1-like isoform 1 [Meleagris gallopavo] Length = 712 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 301 TKESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAIAVLEELK 346 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G+ A+GM +K+ A++ Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GVHTAEGMGTNKKVAKRN 439 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 440 AAENMLEILG 449 >gi|224078725|ref|XP_002188609.1| PREDICTED: staufen [Taeniopygia guttata] Length = 697 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 301 TKESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAIAVLEELK 346 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 33/70 (47%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V SG+ A+GM +K+ A++ Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVGESGVHTAEGMGTNKKVAKRN 440 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 441 AAENMLEILG 450 >gi|61098218|ref|NP_001012849.1| double-stranded RNA-binding protein Staufen homolog 1 [Gallus gallus] gi|53136660|emb|CAG32659.1| hypothetical protein RCJMB04_32c1 [Gallus gallus] Length = 712 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 301 TKESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAIAVLEELK 346 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G+ A+GM +K+ A++ Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GVHTAEGMGTNKKVAKRN 439 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 440 AAENMLEILG 449 >gi|328784437|ref|XP_624606.3| PREDICTED: RISC-loading complex subunit tarbp2-like [Apis mellifera] Length = 383 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 TP+Y++ G H+P F V ++ A G SK+ A+ AA VL + Sbjct: 85 TPKYELIQVEGAIHEPIFRYRVTVAD-VVAMGTGKSKKEAKHAAARAVLDKL 135 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K + LQE ++ P+Y + G H+ +FT+V + G SK+ A Sbjct: 167 KIITNPIGALQEMCMSRHWPPPKYTIENEEGLPHERQFTIVCSVL-KYREVGQGKSKKVA 225 Query: 212 EQVAAAEVLKRE 223 ++ AA ++ + Sbjct: 226 KRHAAHKMWQAL 237 >gi|225436071|ref|XP_002272355.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 562 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 40/162 (24%), Gaps = 3/162 (1%) Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 S + S ++ LD + + T Sbjct: 154 HSTETHSHGSSVRNDLQYQYKSQLQNYARSKNLDAPLYSSKCDGPHHALRFKATVTIDGH 213 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 E A V + K L E A + P+Y+ Sbjct: 214 TFGSPEFFNTLKKAEHAAAKVALMSLLQDDFQEDDSGFYKNVLLELAQKELFCIPKYETV 273 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219 GP H P F V++ G G SK+ AE AA Sbjct: 274 KC-GPSHMPTFFSTVKVDGE-IFHGKAGRSKKQAEMKAAKAA 313 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 15/46 (32%), Gaps = 1/46 (2%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLKRE 223 GP H RF V I G + + AE AA L Sbjct: 194 KCDGPHHALRFKATVTIDGHTFGSPEFFNTLKKAEHAAAKVALMSL 239 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219 GPDH P F V ++GL+ S + A AA Sbjct: 25 DGPDHLPHFKASVYVNGLSFHSPTISTSSKQAHNQAAKLA 64 >gi|299748332|ref|XP_001837616.2| double-stranded RNA binding domain-containing protein-containing protein [Coprinopsis cinerea okayama7#130] gi|298407924|gb|EAU84240.2| double-stranded RNA binding domain-containing protein-containing protein [Coprinopsis cinerea okayama7#130] Length = 435 Score = 58.0 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 8/58 (13%) Query: 176 KVTFRSGPDH--------DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + PDH +P + V V + G +G +K+AA AA E L + GI Sbjct: 376 WYSDPCVPDHLRIKSSPLNPVWYVKVLVDGEFYGRGRGNTKKAARNEAAKEGLVKLGI 433 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 77/194 (39%), Gaps = 17/194 (8%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSIS-----------HSYQESYERLEFLGDRI 50 + + + L + NR++ + TH S + ER E LGD + Sbjct: 84 NNVNFPPLPEI-----TNRNIELQVFTHRSYHARPTHVFEDHINDLSPDNERYEHLGDTV 138 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 LGL+++ L+F+ F + G + + +V T ++++++ L +R+ Sbjct: 139 LGLVVTNLMFDMFPGLRVGPSTKIRSLVVGNSTLAEISKKYRLPDRLRLHQAQAIT-LRA 197 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 T++QADV E+ + L+ D + +++ ++ A + + R + + Sbjct: 198 STNVQADVFEAFVGGLFKDQDLPAVQRWLNPLFRPYAKAAYDYVRKQTNLPPLPPSSHYL 257 Query: 171 VTPEYKVTFRSGPD 184 S P+ Sbjct: 258 SRNGASNNGSSHPE 271 >gi|201068|gb|AAA40150.1| serine/threonine-specific protein kinase [Mus musculus] Length = 518 Score = 58.0 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 20/57 (35%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GV YK SGP HD RFT V I + SK A AA Sbjct: 14 NKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFGEAKGRSKTEARNAAAKLA 70 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 17/37 (45%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF +I G +K+ A+Q+AA E ++ Sbjct: 124 QRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKL 160 >gi|291241541|ref|XP_002740673.1| PREDICTED: RNA-specific adenosine deaminase B1-like [Saccoglossus kowalevskii] Length = 618 Score = 58.0 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ RSGP H P F + V++ G +G CS + A+ + A + LK Sbjct: 84 QFIEVSRSGPPHAPVFVMGVKVDGQ-YFEGKGCSIKQAKHIVAKQALK 130 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%) Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 Y SG H+ +T+ V++ A QG +K + AA L + + Sbjct: 173 YNPGPIIYDTLSESGNGHEKMYTMAVKVGD-AVFQGTGANKHQGKMAAARAALSQLNV 229 >gi|321468486|gb|EFX79471.1| hypothetical protein DAPPUDRAFT_244860 [Daphnia pulex] Length = 118 Score = 58.0 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + L EW + PEY+V +SGP H + + ++S +G+ SK+AA+ A Sbjct: 47 NPSGVLSEWRLTRHSTLPEYRVVRKSGPSHSKTYFMTCKLS-ERVTEGVGKSKKAAKNDA 105 Query: 216 AAEVLKRE 223 A ++L+ Sbjct: 106 AQKMLQIL 113 >gi|316979346|gb|EFV62151.1| ribosome biogenesis protein BOP1 [Trichinella spiralis] Length = 983 Score = 58.0 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 LQE+ K + P + G HD F V VE+ G SK+ A+Q AA Sbjct: 779 YVNVLQEFCIQKHYLKPVFTEEGMCGAQHDQTFFVSVELGEYKK-TGSGRSKKLAKQNAA 837 Query: 217 AEVL 220 +L Sbjct: 838 HLML 841 Score = 44.1 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 48/175 (27%), Gaps = 7/175 (4%) Query: 48 DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 D + + A + VS + +++ + ++ + + Sbjct: 550 DNTIKPCKVFRYHDSGVRAVACHGRYPLFASVSDDATAKIFHCTVYNDYDKMPLIVPLKI 609 Query: 108 CSFMTSIQADVVESLIAAL------YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 ++ + G V F + + L Sbjct: 610 LRSHRKVETVGSILDCTFHPTQPWLFTSGADGVICLFTGLKVSMTTAEGCNKGVKSPLSL 669 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K G+TP Y++ G D F + I + G SK+ A+Q AA Sbjct: 670 LHEICGKKGLTPMYELLTSQGQGVDSLFVYRLCID-SVVSTGRGKSKKLAKQNAA 723 >gi|164508746|emb|CAM07148.1| double stranded RNA activated protein kinase 2 [Tetraodon nigroviridis] Length = 424 Score = 58.0 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 Y+ GPDH RF V ++G A +G +KR A+ AA WT Sbjct: 21 YEDVGCDGPDHIKRFRVRAIVNGRAFPEGAGKNKRDAKHKAAENA------WT 67 >gi|90704799|dbj|BAE92294.1| similarity to ribonuclease III [Cryptomeria japonica] Length = 191 Score = 58.0 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 1 MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIST 57 M A L+ +I Y F +++LL A+TH+S S ++ L LG I+ IS Sbjct: 31 MEASDDAAIKALQTKIRYQFKDQTLLILAITHASYSF---DNNGALNVLGYNIIQAAISL 87 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 + + G+L + + L + S+ A +L L I+V+ + S + Sbjct: 88 HYVLNNSAIGSGDLHSKISELSNCTVLSKDAFDLQLHDLIKVAPKINPKKQSILCGCYRA 147 Query: 118 VVESL 122 + ++ Sbjct: 148 LFGAI 152 >gi|84616741|emb|CAJ47419.1| RNA-specific adenosine deaminase [Gallus gallus] Length = 853 Score = 58.0 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 33/100 (33%) Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + ++ F + K + E+ + +SGP Sbjct: 109 SIMHTQSSPSYTAQFNTIFPCTPVEKLLACQEKNPVSGLTEYSQFTYQHCEFTMLEQSGP 168 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H+PRF I+G SK+ A+Q AAA ++ Sbjct: 169 SHEPRFKFQAVINGRPFPPAEAGSKKLAKQEAAANAMRIL 208 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 24/46 (52%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GP HDPRF+ V++ + SK+ A+Q+AA +K Sbjct: 278 LSQDGPPHDPRFSYCVKMGDQIFPAVVGNSKKGAKQMAAEVAVKIL 323 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++GP HDP+F ++ G SK+ +Q AA L+ Sbjct: 395 IDQTGPPHDPKFVYQAKVGGRWFPAVTAHSKKQGKQEAADAALRVL 440 >gi|195045715|ref|XP_001992024.1| GH24441 [Drosophila grimshawi] gi|193892865|gb|EDV91731.1| GH24441 [Drosophila grimshawi] Length = 633 Score = 58.0 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 3/115 (2%) Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 + + E + + + + K + Sbjct: 6 NNNIEQHVVNSSTEENMNGYNRKSPQKRRYDMPQYAASPKKKLCKERVPQPKNTVAMLNE 65 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + G YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 66 LRQG--LIYKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATALR 117 >gi|16741143|gb|AAH16422.1| Eif2ak2 protein [Mus musculus] gi|117616338|gb|ABK42187.1| Prkr [synthetic construct] gi|148706522|gb|EDL38469.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Mus musculus] Length = 515 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 21/57 (36%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GV YK SGP HD RFT V I + SK+ A AA Sbjct: 14 NKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGKSKQEARNAAAKLA 70 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 17/37 (45%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF +I G +K+ A+Q+AA E ++ Sbjct: 124 QRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKL 160 >gi|41055520|ref|NP_957219.1| double-stranded RNA-binding protein Staufen homolog 2 [Danio rerio] gi|28277474|gb|AAH45292.1| Staufen, RNA binding protein, homolog 2 (Drosophila) [Danio rerio] Length = 653 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G G +K+ A++ Sbjct: 353 MNPISRLAQIQQAKKEKEPEYMLLSERGMPRRREFIMQVKV-GTEVTTGTGPNKKVAKRN 411 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 412 AAEAMLLQLG 421 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 54/163 (33%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + + T A + Sbjct: 160 YRPLDPKPIPNYRANYNFRGMFNQRYHYPVPKVFYVQLTVGNNEFIGEGRTRQAARHNAA 219 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L +++ + ++ L K + ++V S Sbjct: 220 MKALQALKNEPIPERP-PQCSEEKKETEENSDASKSEISLVYEIALKRNLPVNFEVLKES 278 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA +L+ Sbjct: 279 GPPHMKSFLTRVTV-GEFSAEGEGNSKKLSKKRAALSILQELK 320 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 1/76 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + L + P+YK+ GP H FTV + + + Sbjct: 43 PPQENMANPKEKTPMCLVNELARFNRIQPQYKLLNEKGPAHAKIFTVQLCLGNQVW-ESE 101 Query: 205 DCSKRAAEQVAAAEVL 220 S + A+ A + L Sbjct: 102 GSSIKKAQHSTATKAL 117 >gi|73919457|sp|Q7ZW47|STAU2_DANRE RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2 Length = 606 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G G +K+ A++ Sbjct: 306 MNPISRLAQIQQAKKEKEPEYMLLSERGMPRRREFIMQVKV-GTEVTTGTGPNKKVAKRN 364 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 365 AAEAMLLQLG 374 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 54/163 (33%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + + T A + Sbjct: 113 YRPLDPKPIPNYRANYNFRGMFNQRYHYPVPKVFYVQLTVGNNEFIGEGRTRQAARHNAA 172 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L +++ + ++ L K + ++V S Sbjct: 173 MKALQALKNEPIPERP-PQCSEEKKETEENSDASKSEISLVYEIALKRNLPVNFEVLKES 231 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA +L+ Sbjct: 232 GPPHMKSFLTRVTV-GEFSAEGEGNSKKLSKKRAALSILQELK 273 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L + P+YK+ GP H FTV + + + S + Sbjct: 1 MANPKEKTPMCLVNELARFNRIQPQYKLLNEKGPAHAKIFTVQLCLGNQVW-ESEGSSIK 59 Query: 210 AAEQVAAAEVL 220 A+ A + L Sbjct: 60 KAQHSTATKAL 70 >gi|73961632|ref|XP_547564.2| PREDICTED: similar to adenosine deaminase, RNA-specific isoform b [Canis familiaris] Length = 1119 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + + + + + + ++ + L E+A T E+ Sbjct: 383 NSIHAAPGEFRAIMEMPSFYSHGWPRCSPYKKLTECQLKNPISGLLEYAQ-FASQTCEFN 441 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + +SGP H+PRF V I G SK+ A+Q AA + Sbjct: 442 LLEQSGPPHEPRFKFQVIIGGREFPPAEAGSKKVAKQDAALKA 484 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 35/96 (36%) Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 D +E + + F K G + E+++ R GP HDP Sbjct: 504 YDCSMEKGSEKTAEAQPSTPSATSFFSGKNPVTTLLECVHKLGSSCEFRLLSREGPAHDP 563 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F V + SK+ A+Q+AA E +K Sbjct: 564 KFQYCVAMGAHTFPTVSAPSKKVAKQMAAEEAMKAL 599 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 666 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 711 >gi|200210|gb|AAA39885.1| 65 kD protein kinase [Mus musculus] Length = 515 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 21/57 (36%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GV YK SGP HD RFT V I + SK+ A AA Sbjct: 14 NKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLA 70 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 16/37 (43%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF +I G K+ A+Q+AA E ++ Sbjct: 124 QRFICKCKIGQTMYGTGSGVIKQEAKQLAAKEAYQKL 160 >gi|195347707|ref|XP_002040393.1| GM19166 [Drosophila sechellia] gi|194121821|gb|EDW43864.1| GM19166 [Drosophila sechellia] Length = 602 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 3/95 (3%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y + G + KY + + K + + G YK+ ++GP H Sbjct: 21 YNQKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVGMLNELRHG--LIYKLESQTGPVHA 78 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P FT+ VE+ G SK+ A AAA L+ Sbjct: 79 PLFTISVEVDDQKY-YGQGRSKKIARIEAAATALR 112 >gi|213512316|ref|NP_001134804.1| Interferon-induced, double-stranded RNA-activated protein kinase [Salmo salar] gi|209736186|gb|ACI68962.1| Interferon-induced, double-stranded RNA-activated protein kinase [Salmo salar] Length = 181 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + +++ GPDH FT+ V I G A G+ +K+ A++ AA L Sbjct: 11 FEYAQRQGQISDIKFEEVGTDGPDHLKTFTLRVVIKGHAYPNGVGKTKKEAKRNAAKHAL 70 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 11/100 (11%), Positives = 28/100 (28%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 +LI + + + + A K H++ + Sbjct: 68 HALIGMMETTEQKDASVSCPPSPAPSPAPPVRAVISQPKYVSWLNEHSQKNKLSLKALEG 127 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 ++ + +G +K+ A++ AA +V Sbjct: 128 ARVGPNNTSQCCRYVVGEKEYPEGFGNTKKEAKEEAAMQV 167 >gi|224084072|ref|XP_002188254.1| PREDICTED: adenosine deaminase, RNA-specific [Taeniopygia guttata] Length = 926 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 33/100 (33%) Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + A F + A K + ++ + ++GP Sbjct: 182 CIMDSQSSPSYAAQFETAFPCTPAEKLIACQEKNPVSGLTEYSQYTYQHCDFIMLEQNGP 241 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H+PRF I+G SK+ A+Q AAA +K Sbjct: 242 SHEPRFKFQAVINGRQFPPAEAGSKKLAKQEAAANAMKVL 281 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + K G E+++ + GP HDPRF+ V++ + SK+ A+Q+A Sbjct: 329 KHPISILMEYGQKSGNIIEFQLLSQEGPPHDPRFSYCVKMGDQIFPAVVGNSKKGAKQMA 388 Query: 216 AAEVLKRE 223 A +K Sbjct: 389 AEVAVKIL 396 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP HDP+F ++ G +K+ +Q AA L+ Sbjct: 467 IDQSGPPHDPKFVYQAKVGGRWFPAVTAHNKKQGKQEAADAALRVL 512 >gi|118102165|ref|XP_001232162.1| PREDICTED: similar to RNA-specific adenosine deaminase [Gallus gallus] Length = 853 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 34/100 (34%) Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + ++ A F + K + E+ + +SGP Sbjct: 109 SIMHTQSSPSYAAQFNTIFPCTPVEKLLACQEKNPVSGLTEYSQFTYQHCEFTMLEQSGP 168 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H+PRF I+G SK+ A+Q AAA ++ Sbjct: 169 SHEPRFKFQAVINGRPFPPAEAGSKKLAKQEAAANAMRIL 208 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 24/46 (52%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + GP HDPRF+ V++ + SK+ A+Q+AA +K Sbjct: 278 LSQDGPPHDPRFSYCVKMGDQIFPAVVGNSKKGAKQMAAEVAVKIL 323 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++GP HDP+F ++ G SK+ +Q AA L+ Sbjct: 395 IDQTGPPHDPKFVYQAKVGGRWFPAVTAHSKKQGKQEAADAALRVL 440 >gi|229891681|sp|B6P4U0|TRBP2_BRAFL RecName: Full=Probable RISC-loading complex subunit BRAFLDRAFT_242885 Length = 319 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 1/102 (0%) Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + + + + + + +LQE + PEY V Sbjct: 86 FFYNIMHIFDLCIFYCPIPPSTYSESGGVLTPPDNPIGQLQELVVERGWRLPEYIVISEQ 145 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H FT+ V++ G SK+AA++ AA +L R Sbjct: 146 GPPHCKEFTIQVKVE-KFKDTGTGSSKKAAKRSAAGVLLTRL 186 >gi|28277444|gb|AAH44344.1| Adar protein [Danio rerio] Length = 917 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 30/63 (47%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + G ++ T + GP HDPRF V++ + SK+AA Q+AA E + Sbjct: 747 VLMEHSQRSGHPIQFIKTGQEGPSHDPRFMFRVKVGERLFQEASAPSKKAARQLAAEEAV 806 Query: 221 KRE 223 K Sbjct: 807 KEL 809 Score = 38.0 bits (86), Expect = 0.94, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 19/45 (42%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 G T E+ + +SGP HDPRF + V + G + Sbjct: 634 MEFAQHLGYTCEFLLLEQSGPSHDPRFRMQVMLDGRRFPAAEGSN 678 >gi|18858253|ref|NP_571671.1| double-stranded RNA-specific adenosine deaminase [Danio rerio] gi|7770273|gb|AAF69672.1| double-stranded RNA-specific editase [Danio rerio] Length = 1382 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 30/63 (47%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + G ++ T + GP HDPRF V++ + SK+AA Q+AA E + Sbjct: 747 VLMEHSQRSGHPIQFIKTGQEGPSHDPRFMFRVKVGERLFQEASAPSKKAARQLAAEEAV 806 Query: 221 KRE 223 K Sbjct: 807 KEL 809 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 22/46 (47%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+FT ++ G +K+ +Q AA L+ Sbjct: 890 VGQSGPSHEPKFTYQAKLGGRWFPAVCASNKKQGKQEAADAALRVL 935 Score = 38.0 bits (86), Expect = 0.94, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 19/45 (42%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 G T E+ + +SGP HDPRF + V + G + Sbjct: 634 MEFAQHLGYTCEFLLLEQSGPSHDPRFRMQVMLDGRRFPAAEGSN 678 >gi|327303976|ref|XP_003236680.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892] gi|326462022|gb|EGD87475.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892] Length = 1460 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 S +E I Y+F ++LL +L+H S + +Y+RLEFLGD IL +++ LF Sbjct: 1178 LSKVEPLIEYSFTKKALLAASLSHPS-NPISGMTYQRLEFLGDSILDNIVTRALFRCKKE 1236 Query: 66 AKEGELSVRFNSLVSAETCSQVARE 90 ++ + +LV+A+ + + Sbjct: 1237 IPHQDMHLIRTALVNADFLAFLCMN 1261 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 F N L+ A+T +S +Y+RLEFLGD L L S L EG LS + + Sbjct: 1003 FQNIQLVLTAITAASAREDI--NYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKD 1060 Query: 77 SLVSAETCSQVARELDLASFIRVSS 101 S+VS + A + L FI + Sbjct: 1061 SIVSNSRLWKAAVDTGLDQFILTTC 1085 >gi|21430030|gb|AAM50693.1| GM01981p [Drosophila melanogaster] Length = 489 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRA 210 + L E + P+YK+ GP H+ F VEI+G +K+ Sbjct: 411 TQDKHPVCVLNELTSKNKWMPPQYKLRQDIGPAHNRSFLFSVEINGQTFTPDRGSNNKKE 470 Query: 211 AEQVAAAEVLKREGIW 226 A+ AAA L+ GI Sbjct: 471 AKLNAAALCLRSLGIL 486 >gi|25009833|gb|AAN71087.1| AT18855p [Drosophila melanogaster] Length = 886 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRA 210 + L E + P+YK+ GP H+ F VEI+G +K+ Sbjct: 808 TQDKHPVCVLNELTSKNKWMPPQYKLRQDIGPAHNRSFLFSVEINGQTFTPDRGSNNKKE 867 Query: 211 AEQVAAAEVLKREGIW 226 A+ AAA L+ GI Sbjct: 868 AKLNAAALCLRSLGIL 883 >gi|24645429|ref|NP_649914.1| CG8273 [Drosophila melanogaster] gi|7299212|gb|AAF54409.1| CG8273 [Drosophila melanogaster] Length = 874 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRA 210 + L E + P+YK+ GP H+ F VEI+G +K+ Sbjct: 796 TQDKHPVCVLNELTSKNKWMPPQYKLRQDIGPAHNRSFLFSVEINGQTFTPDRGSNNKKE 855 Query: 211 AEQVAAAEVLKREGIW 226 A+ AAA L+ GI Sbjct: 856 AKLNAAALCLRSLGIL 871 >gi|284050833|ref|ZP_06381043.1| ribonuclease III [Arthrospira platensis str. Paraca] Length = 120 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 5/95 (5%) Query: 5 RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 + L +R+G + ++ LL+ ALTH S+S Q++YE+LEF+GD ++ L S LLF Sbjct: 15 QLEKLIERLGLSPQHKIAWQLLDLALTHPSVSS--QDNYEQLEFVGDSVVRLAASELLFE 72 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 + +A GE + + LVS ++++ L + Sbjct: 73 TYPNAPVGEFAAVRSILVSDRILAEISESYGLGRY 107 >gi|260800185|ref|XP_002595015.1| hypothetical protein BRAFLDRAFT_237436 [Branchiostoma floridae] gi|229280255|gb|EEN51026.1| hypothetical protein BRAFLDRAFT_237436 [Branchiostoma floridae] Length = 634 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y++ +SGP H P F + VE++G +G +K+ A+ AA +VL+ Sbjct: 33 QYRLISQSGPPHAPEFVMSVEMNGQTF-KGRGRTKKEAKLRAAEQVLR 79 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G H F + V I G +G SK+ A+ AA L+ Sbjct: 177 VSETGESHAKNFVMAVTIDGRT-CEGSGRSKKLAKIRAAQAALQEI 221 >gi|170090528|ref|XP_001876486.1| predicted protein [Laccaria bicolor S238N-H82] gi|164647979|gb|EDR12222.1| predicted protein [Laccaria bicolor S238N-H82] Length = 356 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 21/39 (53%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P + V V + G +G +K+AA AA E L++ GI Sbjct: 316 PVWYVKVMVDGEFYGRGRGNTKKAARNEAAKEGLEKMGI 354 >gi|148228849|ref|NP_001080784.1| staufen, RNA binding protein, homolog 2 [Xenopus laevis] gi|28302215|gb|AAH46732.1| Stau2-a protein [Xenopus laevis] Length = 685 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A G +K+ A++ Sbjct: 388 MNPISRLAQIQQAKKEKEPEYVLLSERGIQRRREFIMQVKV-GEETATGTGPNKKIAKRN 446 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 447 AAEAMLLQLG 456 Score = 44.1 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 1/74 (1%) Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 + L + P+YK+ GP H FTV + + Q Sbjct: 80 HDNMTNPKEKTPMCLVNELARFNRIQPQYKLLDERGPAHSKLFTVQLTLGEQTW-QAEST 138 Query: 207 SKRAAEQVAAAEVL 220 S + ++ AA+ L Sbjct: 139 SIKKSQHAAASLAL 152 >gi|195162123|ref|XP_002021905.1| GL14352 [Drosophila persimilis] gi|194103803|gb|EDW25846.1| GL14352 [Drosophila persimilis] Length = 619 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 3/118 (2%) Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 + + + A+ E+ + + + + K + Sbjct: 3 KSANNNSLQHPVANTSENTMNGYNRKVPPKRRYEMPKYAAPPKKKTCKERIPQPKNTVAM 62 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + G YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 63 LNELRNG--LIYKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATALR 117 >gi|158341011|ref|YP_001522178.1| exoribonuclease II [Acaryochloris marina MBIC11017] gi|158311252|gb|ABW32864.1| exoribonuclease II [Acaryochloris marina MBIC11017] Length = 623 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 18/186 (9%), Positives = 53/186 (28%), Gaps = 5/186 (2%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 + LE+LGD + ++++ + + S + + + + Sbjct: 426 QVLEYLGDHLYD--AASIVSIALNQIEAWHSSAYVEVSQEPPFMTWLEILIGEQLWTTAK 483 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 + + +++ + A + K R+ + Sbjct: 484 PGISMNKTGAKHQACLAWLKAKFEGTLVHPEHREAPPIPQPSAPKPPPVIHKLRQYQEGH 543 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAA 217 + ++ +H+ F + + G+ SK+ A+ AA Sbjct: 544 NCLSLLMELCQGLQWPQAEFEIVEHEQGFHCECRLKVDDEVIIGSGIASSKKTAKHRAAR 603 Query: 218 EVLKRE 223 V+++ Sbjct: 604 PVVEQL 609 >gi|6755160|ref|NP_035293.1| interferon-induced, double-stranded RNA-activated protein kinase [Mus musculus] gi|2507204|sp|Q03963|E2AK2_MOUSE RecName: Full=Interferon-induced, double-stranded RNA-activated protein kinase; AltName: Full=Eukaryotic translation initiation factor 2-alpha kinase 2; Short=eIF-2A protein kinase 2; AltName: Full=Interferon-inducible RNA-dependent protein kinase; AltName: Full=P1/eIF-2A protein kinase; AltName: Full=Protein kinase RNA-activated; Short=PKR; AltName: Full=Serine/threonine-protein kinase TIK; AltName: Full=p68 kinase gi|536918|gb|AAC24729.1| interferon-inducible RNA-dependent protein kinase [Mus musculus] gi|26324546|dbj|BAC26027.1| unnamed protein product [Mus musculus] Length = 515 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 21/57 (36%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GV YK SGP HD RFT V I + SK+ A AA Sbjct: 14 NKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLA 70 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 17/37 (45%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF +I G +K+ A+Q+AA E ++ Sbjct: 124 QRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKL 160 >gi|198470865|ref|XP_001355419.2| GA11711 [Drosophila pseudoobscura pseudoobscura] gi|198145657|gb|EAL32477.2| GA11711 [Drosophila pseudoobscura pseudoobscura] Length = 633 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 3/118 (2%) Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 + + + A+ E+ + + + + K + Sbjct: 3 KSANNNSLQHPVANSSENTMNGYNRKVPPKRRYEMPKYAAPPKKKTCKERIPQPKNTVAM 62 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + G YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 63 LNELRNG--LIYKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATALR 117 >gi|302845712|ref|XP_002954394.1| hypothetical protein VOLCADRAFT_106340 [Volvox carteri f. nagariensis] gi|300260324|gb|EFJ44544.1| hypothetical protein VOLCADRAFT_106340 [Volvox carteri f. nagariensis] Length = 2391 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62 +E+ +G+ FA+ L +ALTH S + S Y+R+EFLGD +LG++ S F Sbjct: 2108 NVLAVEELLGHTFAHPKLCVQALTHVSHPTASSCGGGYQRVEFLGDGVLGMVASVWAFCS 2167 Query: 63 FDSAKE 68 S Sbjct: 2168 VPSRDT 2173 >gi|224135779|ref|XP_002322158.1| predicted protein [Populus trichocarpa] gi|222869154|gb|EEF06285.1| predicted protein [Populus trichocarpa] Length = 160 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 4/120 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 TL+ + GYAF N L +A+THSS S + + L LG ++ +S Sbjct: 18 LDTLQNQTGYAFKNIGYLRRAMTHSSFSEE---NNKALSILGSNVIDTSVSMYYLGKDAE 74 Query: 66 AKEGELSVRFNSLVSAETCS-QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 +L+ R +T L L +RVS + S + ++ Sbjct: 75 ISSKDLNRRIADNSKVDTSCAVDGMRLGLHKVVRVSPKTNSTTPLVVCSAFRALFGAIAI 134 >gi|321457596|gb|EFX68679.1| hypothetical protein DAPPUDRAFT_259733 [Daphnia pulex] Length = 402 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 2/77 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + E + Y ++ +L +A TH + ++Y+RLE +GD LG + + Sbjct: 84 LAKFENILHYTSNDKEVLLEAFTH--GNSMKSQNYQRLELIGDAALGDITKLRSACVCND 141 Query: 66 AKEGELSVRFNSLVSAE 82 + Sbjct: 142 IFGVWAAKYGFHEHVQN 158 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFD 64 E+ + Y+F + +L +ALT +S + +Y+RLE +GD L + Sbjct: 315 VKAFEEILNYSFNYKEVLLEALT---YGNSIRSLNYQRLEVIGDAALDYPSIFFSSDSPP 371 Query: 65 SAKEGELSV 73 + +L Sbjct: 372 VSPFNQLEK 380 >gi|195499487|ref|XP_002096969.1| GE25964 [Drosophila yakuba] gi|194183070|gb|EDW96681.1| GE25964 [Drosophila yakuba] Length = 908 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 1/76 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRA 210 + L E P+YK+ GP H+ F VEI+G +K+ Sbjct: 830 TQDKHPVCVLNELTSKNKWTPPQYKLRQDIGPAHNRSFLFSVEINGQTYTPDRGCNNKKE 889 Query: 211 AEQVAAAEVLKREGIW 226 A+ AA L+ GI Sbjct: 890 AKLNAATLCLRALGIL 905 >gi|194902968|ref|XP_001980797.1| GG16917 [Drosophila erecta] gi|190652500|gb|EDV49755.1| GG16917 [Drosophila erecta] Length = 892 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 1/76 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRA 210 + L E P+YK+ GP H+ F VEI+G +K+ Sbjct: 814 TQDKHPVCVLNELTSKNKWTPPQYKLRQDIGPAHNRSFLFSVEINGQTYTPDRGCNNKKE 873 Query: 211 AEQVAAAEVLKREGIW 226 A+ AA L+ GI Sbjct: 874 AKLNAATLCLRALGIL 889 >gi|47209094|emb|CAF93170.1| unnamed protein product [Tetraodon nigroviridis] Length = 673 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 1/101 (0%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y DG ++ R + K + + +Y++ +SGP H Sbjct: 312 YEDGAMDDKDLIKKMKRNLRKVLDSKAIDSNQPMNALMRLNQIRPGLQYRLLSQSGPVHA 371 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 P FT+ V++ G + SK+ A+ A +VL+ G T Sbjct: 372 PVFTMSVDVDGTVY-EASGSSKKTAKLHVAVKVLQAMGYPT 411 Score = 34.9 bits (78), Expect = 7.7, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 Y + SG HD RF + VE+ G +G + Sbjct: 480 YDLISESGGSHDKRFVMEVEVDGQKF-RGAGPN 511 >gi|12834450|dbj|BAB22917.1| unnamed protein product [Mus musculus] Length = 134 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 27/79 (34%) Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + + + L K P YK GP H +TV V G G Sbjct: 15 NQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKG 74 Query: 206 CSKRAAEQVAAAEVLKREG 224 S + AE AA + L++ Sbjct: 75 PSIQQAEMGAAMDALEKYN 93 >gi|47523704|ref|NP_999484.1| double stranded RNA-dependent protein kinase [Sus scrofa] gi|29292936|dbj|BAC66439.1| double stranded RNA-dependent protein kinase [Sus scrofa] Length = 537 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 20/42 (47%) Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G D +F +I G+ +K+ A+Q+AA + ++ Sbjct: 124 GEDGPEKFHYKCKIGRKVYGSGVGSTKQEAKQLAAKQAYEKL 165 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K V +Y+ ++GP H+ RFT V I + SK+ A+ A + Sbjct: 15 NKYQQKNDVILKYRELCKTGPAHNLRFTYQVVIDEKEFPKAEGRSKKEAKNAAVKLAFEI 74 Query: 223 EG 224 Sbjct: 75 IN 76 >gi|327271788|ref|XP_003220669.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1-like isoform 2 [Anolis carolinensis] Length = 693 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 299 TRESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAIAVLEELK 344 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G+ A+GM +K+ A++ Sbjct: 379 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GMHTAEGMGTNKKVAKRN 437 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 438 AAENMLELLG 447 >gi|327271786|ref|XP_003220668.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1-like isoform 1 [Anolis carolinensis] Length = 695 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 301 TRESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAIAVLEELK 346 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G+ A+GM +K+ A++ Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GMHTAEGMGTNKKVAKRN 439 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 440 AAENMLELLG 449 >gi|114107707|gb|AAI22893.1| stau1 protein [Xenopus (Silurana) tropicalis] Length = 686 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ ++VT +GP H F V + G +G SK+ +++ AA VL+ Sbjct: 282 NMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGEGEGKSKKISKKNAAISVLEEL 334 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ + A+GM +K+ A++ Sbjct: 370 MNPISRLAQIQQAKKDKEPEYILITERGLPRRREFVMQVKVGNHS-AEGMGTNKKVAKRN 428 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 429 AAENMLELLG 438 >gi|62858029|ref|NP_001016542.1| staufen, RNA binding protein, homolog 1 [Xenopus (Silurana) tropicalis] Length = 614 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ ++VT +GP H F V + G +G SK+ +++ AA VL+ Sbjct: 210 NMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGEGEGKSKKISKKNAAISVLEEL 262 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ + A+GM +K+ A++ Sbjct: 298 MNPISRLAQIQQAKKDKEPEYILITERGLPRRREFVMQVKVGNHS-AEGMGTNKKVAKRN 356 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 357 AAENMLELLG 366 >gi|89271756|emb|CAJ83112.1| novel protein similar to staufen [Xenopus (Silurana) tropicalis] Length = 696 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ ++VT +GP H F V + G +G SK+ +++ AA VL+ Sbjct: 292 NMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGEGEGKSKKISKKNAAISVLEEL 344 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ + A+GM +K+ A++ Sbjct: 380 MNPISRLAQIQQAKKDKEPEYILITERGLPRRREFVMQVKVGNHS-AEGMGTNKKVAKRN 438 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 439 AAENMLELLG 448 >gi|321468344|gb|EFX79329.1| hypothetical protein DAPPUDRAFT_244966 [Daphnia pulex] Length = 96 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L EW + PEY+V SGP H + + ++S +G SK+AA+ AA ++L Sbjct: 30 LSEWRFTRHSSLPEYRVVRTSGPSHSKTYFMTCKLSDRV-TEGEGKSKKAAKNDAAQKML 88 Query: 221 KRE 223 + Sbjct: 89 QIL 91 >gi|296863417|pdb|3ADL|A Chain A, Structure Of Trbp2 And Its Molecule Implications For Mirna P Length = 88 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 PEY VT SGP H FT+ + G SK+ A++ AAA++L Sbjct: 30 WRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNAAAKML 79 >gi|195133919|ref|XP_002011386.1| GI16028 [Drosophila mojavensis] gi|193907361|gb|EDW06228.1| GI16028 [Drosophila mojavensis] Length = 633 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 3/118 (2%) Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 +F+ + + E + + + + K + Sbjct: 3 NSANNNFVQHVVSTSTEGNMNGYNRKSPQKRRYDMPKYAVPPKKKSGKERVPQPKNTVAM 62 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + G YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 63 LNELRHG--LIYKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATALR 117 >gi|332207755|ref|XP_003252961.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 3 [Nomascus leucogenys] Length = 577 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 208 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 250 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ A+G +K+ A++ A Sbjct: 286 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGTGTNKKVAKRNA 344 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 345 AENMLEILG 353 >gi|332207753|ref|XP_003252960.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 2 [Nomascus leucogenys] gi|332207761|ref|XP_003252964.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 6 [Nomascus leucogenys] Length = 502 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 133 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 175 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ A+G +K+ A++ A Sbjct: 211 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGTGTNKKVAKRNA 269 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 270 AENMLEILG 278 >gi|332207751|ref|XP_003252959.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 1 [Nomascus leucogenys] gi|332207757|ref|XP_003252962.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 4 [Nomascus leucogenys] gi|332207759|ref|XP_003252963.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 5 [Nomascus leucogenys] Length = 496 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 127 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 169 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ A+G +K+ A++ A Sbjct: 205 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGTGTNKKVAKRNA 263 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 264 AENMLEILG 272 >gi|297259616|ref|XP_001099701.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 3 [Macaca mulatta] Length = 529 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 160 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 202 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 227 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGA 285 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 286 GTNKKVAKRNAAENMLEILG 305 >gi|297259614|ref|XP_001099908.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 5 [Macaca mulatta] Length = 523 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 154 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 196 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 221 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGA 279 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 280 GTNKKVAKRNAAENMLEILG 299 >gi|296200670|ref|XP_002747678.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 [Callithrix jacchus] Length = 577 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 208 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 250 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 275 PQTTPEYGQGINPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGT 333 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 334 GTNKKVAKRNAAENMLEILG 353 >gi|226371684|ref|NP_001033676.2| double-stranded RNA-specific adenosine deaminase isoform 2 [Mus musculus] Length = 930 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T ++ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 216 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 270 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +E + + + F + K G + E+++ + GP HDP+ Sbjct: 291 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 350 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 351 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 385 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 448 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 493 >gi|158256406|dbj|BAF84176.1| unnamed protein product [Homo sapiens] Length = 577 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 208 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 250 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 275 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 333 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 334 GTNKKVAKRNAAENMLEILG 353 >gi|149048041|gb|EDM00617.1| adenosine deaminase, RNA-specific, isoform CRA_b [Rattus norvegicus] Length = 1175 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T ++ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 461 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 515 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 37/95 (38%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 + +E + + + F + K G + E+++ + GP HDP+ Sbjct: 536 NCPMEEDPEKPAESQPPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 595 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 596 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 630 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 693 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 738 >gi|226371679|ref|NP_062629.3| double-stranded RNA-specific adenosine deaminase isoform 1 [Mus musculus] gi|148683238|gb|EDL15185.1| adenosine deaminase, RNA-specific, isoform CRA_a [Mus musculus] Length = 1152 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T ++ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 464 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 518 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +E + + + F + K G + E+++ + GP HDP+ Sbjct: 539 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 598 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 599 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 633 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 696 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741 >gi|119596076|gb|EAW75670.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_b [Homo sapiens] Length = 317 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 127 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 169 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 194 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 252 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 253 GTNKKVAKRNAAENMLEILG 272 >gi|90076086|dbj|BAE87723.1| unnamed protein product [Macaca fascicularis] Length = 502 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 133 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 175 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 200 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGA 258 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 259 GTNKKVAKRNAAENMLEILG 278 >gi|114682577|ref|XP_001166582.1| PREDICTED: staufen isoform 1 [Pan troglodytes] Length = 497 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 127 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 169 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 194 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 252 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 253 GTNKKVAKRNAAENMLEILG 272 >gi|114682565|ref|XP_514710.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 8 [Pan troglodytes] Length = 577 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 208 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 250 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 275 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 333 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 334 GTNKKVAKRNAAENMLEILG 353 >gi|114682575|ref|XP_001166678.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 3 [Pan troglodytes] Length = 502 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 133 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 175 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 200 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 258 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 259 GTNKKVAKRNAAENMLEILG 278 >gi|114682567|ref|XP_001166711.1| PREDICTED: staufen isoform 4 [Pan troglodytes] gi|114682569|ref|XP_001166741.1| PREDICTED: staufen isoform 5 [Pan troglodytes] gi|114682571|ref|XP_001166806.1| PREDICTED: staufen isoform 6 [Pan troglodytes] gi|114682573|ref|XP_001166840.1| PREDICTED: staufen isoform 7 [Pan troglodytes] Length = 496 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 127 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 169 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 194 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 252 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 253 GTNKKVAKRNAAENMLEILG 272 >gi|114682579|ref|XP_001166642.1| PREDICTED: staufen isoform 2 [Pan troglodytes] Length = 492 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 127 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 169 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 194 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 252 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 253 GTNKKVAKRNAAENMLEILG 272 >gi|109091649|ref|XP_001100004.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 6 [Macaca mulatta] gi|109091651|ref|XP_001100094.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform 7 [Macaca mulatta] Length = 577 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 208 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 250 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 275 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGA 333 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 334 GTNKKVAKRNAAENMLEILG 353 >gi|62088702|dbj|BAD92798.1| staufen isoform b variant [Homo sapiens] Length = 591 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 222 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 264 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 289 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 347 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 348 GTNKKVAKRNAAENMLEILG 367 >gi|57208665|emb|CAI42821.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens] Length = 199 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 133 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 175 >gi|57208663|emb|CAI42819.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens] Length = 494 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 127 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 169 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + AK PEY + G F + V++ A+G +K+ A++ A Sbjct: 203 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGTGTNKKVAKRNA 261 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 262 AENMLEILG 270 >gi|226371677|ref|NP_001139768.1| double-stranded RNA-specific adenosine deaminase isoform 3 [Mus musculus] gi|38372251|sp|Q99MU3|DSRAD_MOUSE RecName: Full=Double-stranded RNA-specific adenosine deaminase; Short=DRADA; AltName: Full=RNA adenosine deaminase 1 gi|148683239|gb|EDL15186.1| adenosine deaminase, RNA-specific, isoform CRA_b [Mus musculus] Length = 1178 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T ++ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 464 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 518 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +E + + + F + K G + E+++ + GP HDP+ Sbjct: 539 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 598 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 599 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 633 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 696 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741 >gi|13272339|gb|AAK17103.1|AF291050_1 RNA adenosine deaminase 1 [Mus musculus] Length = 1152 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T ++ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 464 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 518 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +E + + + F + K G + E+++ + GP HDP+ Sbjct: 539 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 598 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 599 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 633 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 20/46 (43%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ Q AA L+ Sbjct: 696 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGXQDAADAALRVL 741 >gi|4335947|gb|AAD17530.1| staufen protein [Homo sapiens] gi|4335951|gb|AAD17532.1| staufen protein [Homo sapiens] gi|4335953|gb|AAD17533.1| staufen protein [Homo sapiens] Length = 496 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 127 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 169 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 194 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 252 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 253 GTNKKVAKRNAAENMLEILG 272 >gi|13236214|gb|AAK16102.1|AF291876_1 RNA adenosine deaminase 1 [Mus musculus] Length = 1178 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T ++ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 464 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 518 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +E + + + F + K G + E+++ + GP HDP+ Sbjct: 539 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 598 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 599 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 633 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 696 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741 >gi|2981097|gb|AAC06233.1| double-stranded RNA-specific adenosine deaminase [Mus musculus] Length = 1152 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T ++ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 464 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 518 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +E + + + F + K G + E+++ + GP HDP+ Sbjct: 539 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 598 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 599 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 633 Score = 46.1 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 20/46 (43%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ Q AA L+ Sbjct: 696 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGRQDAADAALRVL 741 >gi|4335949|gb|AAD17531.1| staufen protein [Homo sapiens] Length = 577 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 208 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 250 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 275 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 333 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 334 GTNKKVAKRNAAENMLEILG 353 >gi|33875035|gb|AAH10169.1| STAU1 protein [Homo sapiens] Length = 196 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 133 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 175 >gi|27768964|gb|AAH42505.1| Adenosine deaminase, RNA-specific [Mus musculus] Length = 1152 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T ++ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 464 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 518 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +E + + + F + K G + E+++ + GP HDP+ Sbjct: 539 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 598 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 599 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 633 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 696 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741 >gi|13591904|ref|NP_112268.1| double-stranded RNA-specific adenosine deaminase [Rattus norvegicus] gi|1706533|sp|P55266|DSRAD_RAT RecName: Full=Double-stranded RNA-specific adenosine deaminase; Short=DRADA gi|755817|gb|AAA65039.1| double-stranded RNA-specific adenosine deaminase [Rattus norvegicus] Length = 1175 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T ++ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 461 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 515 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 37/95 (38%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 + +E + + + F + K G + E+++ + GP HDP+ Sbjct: 536 NCPMEEDPEKPAESQPPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 595 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 596 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 630 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 693 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 738 >gi|74192520|dbj|BAE43048.1| unnamed protein product [Mus musculus] Length = 705 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T ++ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 17 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 71 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +E + + + F + K G + E+++ + GP HDP+ Sbjct: 92 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 151 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 152 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 186 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 249 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 294 >gi|74188545|dbj|BAE28026.1| unnamed protein product [Mus musculus] Length = 930 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T ++ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 216 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 270 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +E + + + F + K G + E+++ + GP HDP+ Sbjct: 291 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 350 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 351 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 385 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 448 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 493 >gi|74140777|dbj|BAC40888.2| unnamed protein product [Mus musculus] Length = 1173 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T ++ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 464 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 518 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +E + + + F + K G + E+++ + GP HDP+ Sbjct: 539 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 598 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 599 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 633 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 696 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741 >gi|71059975|emb|CAJ18531.1| Adar [Mus musculus] Length = 1152 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T ++ + +SGP H+PRF V I+G SK+ A+Q AA + Sbjct: 464 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 518 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +E + + + F + K G + E+++ + GP HDP+ Sbjct: 539 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 598 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 599 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 633 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 696 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741 >gi|209364604|ref|NP_001126609.1| double-stranded RNA-binding protein Staufen homolog 1 [Pongo abelii] gi|55732106|emb|CAH92759.1| hypothetical protein [Pongo abelii] Length = 495 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 126 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 168 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 193 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 251 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 252 GTNKKVAKRNAAENMLEILG 271 >gi|82659091|ref|NP_001032405.1| double-stranded RNA-binding protein Staufen homolog 1 isoform c [Homo sapiens] gi|45758713|gb|AAS76636.1| staufen protein T5 variant [Homo sapiens] gi|45758715|gb|AAS76637.1| staufen protein T4 variant [Homo sapiens] gi|57208664|emb|CAI42820.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens] Length = 502 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 133 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 175 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 200 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 258 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 259 GTNKKVAKRNAAENMLEILG 278 >gi|82659083|ref|NP_004593.2| double-stranded RNA-binding protein Staufen homolog 1 isoform a [Homo sapiens] gi|82659085|ref|NP_059346.2| double-stranded RNA-binding protein Staufen homolog 1 isoform a [Homo sapiens] gi|82659089|ref|NP_059348.2| double-stranded RNA-binding protein Staufen homolog 1 isoform a [Homo sapiens] gi|10944134|emb|CAC14084.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens] gi|13276703|emb|CAB66536.1| hypothetical protein [Homo sapiens] gi|63102431|gb|AAH95397.1| Staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens] gi|119596075|gb|EAW75669.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_a [Homo sapiens] gi|119596078|gb|EAW75672.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_a [Homo sapiens] gi|119596080|gb|EAW75674.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_a [Homo sapiens] gi|158259179|dbj|BAF85548.1| unnamed protein product [Homo sapiens] Length = 496 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 127 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 169 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 194 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 252 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 253 GTNKKVAKRNAAENMLEILG 272 >gi|82659087|ref|NP_059347.2| double-stranded RNA-binding protein Staufen homolog 1 isoform b [Homo sapiens] gi|90185286|sp|O95793|STAU1_HUMAN RecName: Full=Double-stranded RNA-binding protein Staufen homolog 1 gi|10944135|emb|CAC14085.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens] gi|29792190|gb|AAH50432.1| Staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens] gi|119596077|gb|EAW75671.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_c [Homo sapiens] gi|119596079|gb|EAW75673.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_c [Homo sapiens] gi|168277710|dbj|BAG10833.1| double-stranded RNA-binding protein Staufen homolog 1 [synthetic construct] gi|190690419|gb|ACE86984.1| staufen, RNA binding protein, homolog 1 (Drosophila) protein [synthetic construct] gi|190691797|gb|ACE87673.1| staufen, RNA binding protein, homolog 1 (Drosophila) protein [synthetic construct] Length = 577 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 208 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 250 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 275 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 333 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 334 GTNKKVAKRNAAENMLEILG 353 >gi|4572588|emb|CAB40082.1| staufen protein [Homo sapiens] Length = 496 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 127 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 169 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 194 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 252 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 253 GTNKKVAKRNAAENMLEILG 272 >gi|324502096|gb|ADY40922.1| Double-stranded RNA-binding protein Staufen [Ascaris suum] Length = 906 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 32/80 (40%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + + L + A+ P++++ G F V V + +G Sbjct: 462 MKMDPEYGHQINPVSRLMQVMQARKENEPKFQLVAEHGQSRYKEFVVEVTCADGLRCEGT 521 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L R G Sbjct: 522 GPNKKLAKRAAAEAMLARIG 541 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEV 219 + + E+++ GP HD + + ++ + A G SK+ A+Q A A + Sbjct: 363 HECALQMRMNVEFEILREEGPAHDRHYLLRCKMISPDEVIIADGEGGSKKIAKQNACALM 422 Query: 220 LKREG 224 L + Sbjct: 423 LTKLK 427 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%) Query: 183 PDH--DPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P H + V + + + + G +K+ A+ AA + L G Sbjct: 235 PPHIAQRVYQVRLTLSNDMPEFIGKGPTKQKAKLNAATQALLHLG 279 >gi|301754405|ref|XP_002913051.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1-like [Ailuropoda melanoleuca] Length = 684 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 315 SGPPHMKSFVTRVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 357 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + + L + AK PEY + G F + V++ A+G +K+ Sbjct: 388 CSQGMNPISRLAQIQQAKKEKEPEYLLLTERGLPRRREFVMQVKVGNHT-AEGTGTNKKV 446 Query: 211 AEQVAAAEVLKREG 224 A++ AA +L+ G Sbjct: 447 AKRNAAENMLEILG 460 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L + PEYK+ GP H FTV + + + S + Sbjct: 73 MAHPKEKTPMCLVNELARFNKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIK 131 Query: 210 AAEQVAAAEVLK 221 A+ AAA+ L+ Sbjct: 132 KAQHTAAAKALE 143 >gi|297460681|ref|XP_591710.4| PREDICTED: staufen, RNA binding protein, homolog 1 (Drosophila) [Bos taurus] gi|297482107|ref|XP_002692543.1| PREDICTED: staufen, RNA binding protein, homolog 1 (Drosophila) [Bos taurus] gi|296480970|gb|DAA23085.1| staufen, RNA binding protein, homolog 1 [Bos taurus] Length = 601 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 234 SGPPHMKSFVTRVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 276 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + + L + AK PEY + G F + V++ A+G +K+ Sbjct: 305 CGQGMNPISRLAQIQQAKKEKEPEYLLLAERGLPRRREFVMQVKVGNHT-AEGSGTNKKV 363 Query: 211 AEQVAAAEVLKREG 224 A++ AA +L+ G Sbjct: 364 AKRNAAENMLEILG 377 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L + PEYK+ GP H FTV + + + S + Sbjct: 1 MAHPKEKTLVCLVNELARFNKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIK 59 Query: 210 AAEQVAAAEVLK 221 A+ AAA+ L+ Sbjct: 60 KAQHTAAAKALE 71 >gi|325530262|sp|D2GVP7|STAU1_AILME RecName: Full=Double-stranded RNA-binding protein Staufen homolog 1 gi|281351107|gb|EFB26691.1| hypothetical protein PANDA_000813 [Ailuropoda melanoleuca] Length = 580 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 215 SGPPHMKSFVTRVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 257 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + + L + AK PEY + G F + V++ A+G +K+ Sbjct: 288 CSQGMNPISRLAQIQQAKKEKEPEYLLLTERGLPRRREFVMQVKVGNHT-AEGTGTNKKV 346 Query: 211 AEQVAAAEVLKREG 224 A++ AA +L+ G Sbjct: 347 AKRNAAENMLEILG 360 >gi|151553859|gb|AAI49062.1| STAU1 protein [Bos taurus] Length = 531 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 162 SGPPHMKSFVTRVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 204 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + + L + AK PEY + G F + V++ A+G +K+ Sbjct: 235 CGQGMNPISRLAQIQQAKKEKEPEYLLLAERGLPRRREFVMQVKVGNHT-AEGSGTNKKV 293 Query: 211 AEQVAAAEVLKREG 224 A++ AA +L+ G Sbjct: 294 AKRNAAENMLEILG 307 >gi|208690889|gb|ACI31220.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Cercocebus torquatus atys] Length = 554 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V E + GP+ F +I G SK+ A+Q+AA L Sbjct: 116 VNYEQCTSGVHGPEG---FHYKCKIGDKEYGIGTGSSKQEAKQLAAKLAL 162 >gi|208690887|gb|ACI31219.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Macaca mulatta] Length = 554 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V E + GP+ F +I G SK+ A+Q+AA L Sbjct: 116 VNYEQCTSGVHGPEG---FHYKCKIGDKEYGIGTGSSKQEAKQLAAKLAL 162 >gi|134105965|gb|ABO60959.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Macaca mulatta] Length = 554 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V E + GP+ F +I G SK+ A+Q+AA L Sbjct: 116 VNYEQCTSGVHGPEG---FHYKCKIGDKEYGIGTGSSKQEAKQLAAKLAL 162 >gi|145301625|ref|NP_001077417.1| interferon-induced, double-stranded RNA-activated protein kinase [Macaca mulatta] gi|134105963|gb|ABO60958.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Macaca mulatta] Length = 554 Score = 57.2 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V E + GP+ F +I G SK+ A+Q+AA L Sbjct: 116 VNYEQCTSGVHGPEG---FHYKCKIGDKEYGIGTGSSKQEAKQLAAKLAL 162 >gi|149733337|ref|XP_001503607.1| PREDICTED: staufen, RNA binding protein, homolog 1 (Drosophila) [Equus caballus] Length = 577 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 208 SGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 250 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ A+G +K+ A++ Sbjct: 285 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGAGTNKKVAKRN 343 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 344 AAENMLEILG 353 >gi|73992221|ref|XP_867056.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen homolog isoform 2 [Canis familiaris] Length = 697 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 328 SGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 370 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + + L + AK PEY + G F + V++ A+G +K+ Sbjct: 401 CGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGAGTNKKV 459 Query: 211 AEQVAAAEVLKREG 224 A++ AA +L+ G Sbjct: 460 AKRNAAENMLEILG 473 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 2/67 (2%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + A G K S H FTV + + + S + A+ Sbjct: 104 QGPAHCKVNIISAWCGSDFLLKEEAVSEYPH-QVFTVQLTLGDQHW-EAEGTSIKKAQHT 161 Query: 215 AAAEVLK 221 AAA+ L+ Sbjct: 162 AAAKALE 168 >gi|73992229|ref|XP_867100.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen homolog isoform 5 [Canis familiaris] Length = 600 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 231 SGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 273 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + + L + AK PEY + G F + V++ A+G +K+ Sbjct: 304 CGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGAGTNKKV 362 Query: 211 AEQVAAAEVLKREG 224 A++ AA +L+ G Sbjct: 363 AKRNAAENMLEILG 376 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L + PEYK+ GP H FTV + + + S + Sbjct: 1 MAHPKEKTPMCLVNELARFNKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIK 59 Query: 210 AAEQVAAAEVLK 221 A+ AAA+ L+ Sbjct: 60 KAQHTAAAKALE 71 >gi|73992227|ref|XP_534450.2| PREDICTED: similar to Double-stranded RNA-binding protein Staufen homolog isoform 1 [Canis familiaris] Length = 684 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 315 SGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 357 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + + L + AK PEY + G F + V++ A+G +K+ Sbjct: 388 CGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGAGTNKKV 446 Query: 211 AEQVAAAEVLKREG 224 A++ AA +L+ G Sbjct: 447 AKRNAAENMLEILG 460 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L + PEYK+ GP H FTV + + + S + Sbjct: 73 MAHPKEKTPMCLVNELARFNKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIK 131 Query: 210 AAEQVAAAEVLK 221 A+ AAA+ L+ Sbjct: 132 KAQHTAAAKALE 143 >gi|73992225|ref|XP_867078.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen homolog isoform 4 [Canis familiaris] Length = 577 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 233 SGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 275 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + + L + AK PEY + G F + V++ A+G +K+ Sbjct: 304 CGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGAGTNKKV 362 Query: 211 AEQVAAAEVLKREG 224 A++ AA +L+ G Sbjct: 363 AKRNAAENMLEILG 376 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L + PEYK+ GP H FTV + + + S + Sbjct: 1 MAHPKEKTPMCLVNELARFNKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIK 59 Query: 210 AAEQVAAAEVLK 221 A+ AAA+ L+ Sbjct: 60 KAQHTAAAKALE 71 >gi|73992231|ref|XP_867111.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen homolog isoform 6 [Canis familiaris] Length = 703 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 334 SGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 376 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + + L + AK PEY + G F + V++ A+G +K+ Sbjct: 407 CGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGAGTNKKV 465 Query: 211 AEQVAAAEVLKREG 224 A++ AA +L+ G Sbjct: 466 AKRNAAENMLEILG 479 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 2/67 (2%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + A G K S H FTV + + + S + A+ Sbjct: 104 QGPAHCKVNIISAWCGSDFLLKEEAVSEYPH-QVFTVQLTLGDQHW-EAEGTSIKKAQHT 161 Query: 215 AAAEVLK 221 AAA+ L+ Sbjct: 162 AAAKALE 168 >gi|73992233|ref|XP_867122.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen homolog isoform 7 [Canis familiaris] Length = 600 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 233 SGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 275 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + + L + AK PEY + G F + V++ A+G +K+ Sbjct: 304 CGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGAGTNKKV 362 Query: 211 AEQVAAAEVLKREG 224 A++ AA +L+ G Sbjct: 363 AKRNAAENMLEILG 376 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L + PEYK+ GP H FTV + + + S + Sbjct: 1 MAHPKEKTPMCLVNELARFNKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIK 59 Query: 210 AAEQVAAAEVLK 221 A+ AAA+ L+ Sbjct: 60 KAQHTAAAKALE 71 >gi|148235090|ref|NP_001085239.1| staufen, RNA binding protein, homolog 1 [Xenopus laevis] gi|56698874|gb|AAW23135.1| Staufen 1 [Xenopus laevis] Length = 718 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ ++VT +GP H F V + G +G SK+ +++ AA VL+ Sbjct: 315 NMSVNFEVTKETGPPHMKSFLTKVIV-GEFLGEGEGKSKKISKKNAAIAVLEEL 367 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK G PEY + G F + V++ A A+G +K+ A++ Sbjct: 403 MNPISRLAQIQQAKKGKEPEYILITERGLPRRREFVMQVKVGNHA-AEGSGTNKKVAKRN 461 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 462 AAENMLEILG 471 >gi|33469621|gb|AAQ19853.1| staufen [Xenopus laevis] Length = 712 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ ++VT +GP H F V + G +G SK+ +++ AA VL+ Sbjct: 309 NMSVNFEVTKETGPPHMKSFLTKVIV-GEFLGEGEGKSKKISKKNAAIAVLEEL 361 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK G PEY + G F + V++ A A+G +K+ A++ Sbjct: 397 MNPISRLAQIQQAKKGKEPEYILITERGLPRRREFVMQVKVGNHA-AEGSGTNKKVAKRN 455 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 456 AAENMLEILG 465 >gi|49256219|gb|AAH74253.1| Stau1 protein [Xenopus laevis] gi|83405197|gb|AAI10922.1| Stau1 protein [Xenopus laevis] Length = 708 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ ++VT +GP H F V + G +G SK+ +++ AA VL+ Sbjct: 305 NMSVNFEVTKETGPPHMKSFLTKVIV-GEFLGEGEGKSKKISKKNAAIAVLEEL 357 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK G PEY + G F + V++ A A+G +K+ A++ Sbjct: 393 MNPISRLAQIQQAKKGKEPEYILITERGLPRRREFVMQVKVGNHA-AEGSGTNKKVAKRN 451 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 452 AAENMLEILG 461 >gi|326935945|ref|XP_003214024.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like [Meleagris gallopavo] Length = 852 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 26/59 (44%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 E+ + +SGP H+PRF I+G SK+ A+Q AAA +K Sbjct: 149 YSQFTYQHCEFTMLEQSGPSHEPRFKFQALINGRPFPPAEAGSKKLAKQEAAANAMKIL 207 Score = 51.5 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 31/68 (45%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + K G T E+ + + GP HDPRF+ V++ + SK+ A+Q+A Sbjct: 255 KHPISVLMEYGQKSGNTIEFLLLSQDGPSHDPRFSYCVKMGDQIFPAVVGNSKKGAKQMA 314 Query: 216 AAEVLKRE 223 A +K Sbjct: 315 AEVAVKIL 322 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++GP HDP+F ++ G SK+ +Q AA L+ Sbjct: 394 IDQTGPPHDPKFVYQAKVGGRWFPAVTAHSKKQGKQEAADAALRVL 439 >gi|170101705|ref|XP_001882069.1| predicted protein [Laccaria bicolor S238N-H82] gi|164642884|gb|EDR07138.1| predicted protein [Laccaria bicolor S238N-H82] Length = 76 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + RSGP H + ++V I + +G +++ A++ AA LKR Sbjct: 13 QHYRKEMPIYEEKRSGPAHAEVWNIIVTIKEIEYGRGEGSNRKRAKEAAAEVALKRL 69 >gi|158298694|ref|XP_318876.4| AGAP009781-PA [Anopheles gambiae str. PEST] gi|157014008|gb|EAA14308.5| AGAP009781-PA [Anopheles gambiae str. PEST] Length = 341 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 ++ ++ + V+ + + + LQE A+ P Y+ Sbjct: 92 AVYMNVHKPDTQFHSCRVVNVHTNNNVNGEEEPTGNPIGWLQEMCMARRLPPPTYETETE 151 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+ +FT+ + G SK+ A++ AA + +R Sbjct: 152 EGLPHERQFTIACVVLNYRE-VGEGKSKKIAKRQAAQRMWQRL 193 Score = 39.5 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 2/76 (2%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA--QGMDCSKRAA 211 + ++ A E + +F +V++S + A G S + A Sbjct: 264 CDRSIDFIRLLADIAKEQRFEVTYVDIEEKAGNGKFQCLVQLSTMPVAVCHGSGNSIQEA 323 Query: 212 EQVAAAEVLKREGIWT 227 + AA L+ I T Sbjct: 324 QSYAARNSLEYLKIMT 339 >gi|149751348|ref|XP_001497601.1| PREDICTED: adenosine deaminase, RNA-specific [Equus caballus] Length = 1145 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 26/49 (53%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF V ISG SK+ A+Q AA + Sbjct: 462 QTCEFNLIEQSGPPHEPRFKFQVVISGREFPPAEAGSKKVAKQDAAMKA 510 Score = 55.3 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K G + E+++ R GP HDP+F V + SK+ A+Q+AA E +K Sbjct: 567 CVHKLGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKVAKQMAAEEAMKAL 625 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 692 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 737 >gi|71017953|ref|XP_759207.1| hypothetical protein UM03060.1 [Ustilago maydis 521] gi|46098828|gb|EAK84061.1| hypothetical protein UM03060.1 [Ustilago maydis 521] Length = 469 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 51/295 (17%), Positives = 83/295 (28%), Gaps = 77/295 (26%) Query: 6 YSTLEKRIGYAF---------ANRSLLEKALTHSSIS----------------------- 33 ++ L R+G L+ +A TH S Sbjct: 126 FAALTARLGLIPSSVDSETRDRRIRLVHQACTHPSFQTLVDQANASANLQLEPGAAVSGL 185 Query: 34 ------------------HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 E + L +G+ +LG+L + L + + L Sbjct: 186 TKKQGADELDAVQFLALPSEGVEHHAALATVGNSLLGMLATEHLHLRYPNLPTRVLKAAV 245 Query: 76 NSLVSAETCSQVARELD---------------LASFIRVSSDLRKDVCSFMTSIQA---- 116 ++ V T S V EL S + R S Sbjct: 246 SAYVGPSTLSDVGSELGLAAQNILRWNKQARAPGSGFTQNRGGRGAAPRSTNSATRTLLS 305 Query: 117 -----DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKF 169 D + +++A ++ + G+ A FV ++ R D K L Sbjct: 306 RDVAADAMRAIVAVIFQEQGLSAARNFVTSHFLSRGFNLSALLKFNDPKHALSSTCAKYG 365 Query: 170 GVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P+ ++ SG P F V V +G S R AE AA + L+R Sbjct: 366 KSPPQSRMIAESGRLSISPVFVVGVWSGETKIGEGSGSSIRMAEFRAAEDALRRL 420 >gi|209154768|gb|ACI33616.1| Interleukin enhancer-binding factor 3 homolog [Salmo salar] Length = 683 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + +YK+ ++GP H P FT+ VE+ G + + SKR A+ Sbjct: 399 EPPQAMNALMRLNQLKPGLQYKLLSQTGPVHVPVFTMAVEVDGKSF-EASGPSKRTAKLH 457 Query: 215 AAAEVLKREGIWT 227 A +VL+ G+ T Sbjct: 458 VAVKVLQDMGLPT 470 Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VEI QG + Sbjct: 550 ISETGGSHDKRFVMEVEIDEQKF-QGTGSN 578 >gi|213511536|ref|NP_001135193.1| interleukin enhancer-binding factor 3 homolog [Salmo salar] gi|209152728|gb|ACI33127.1| Interleukin enhancer-binding factor 3 homolog [Salmo salar] Length = 843 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + +YK+ ++GP H P FT+ VE+ G + + SKR A+ Sbjct: 399 EPPQAMNALMRLNQLKPGLQYKLLSQTGPVHVPVFTMAVEVDGKSF-EASGPSKRTAKLH 457 Query: 215 AAAEVLKREGIWT 227 A +VL+ G+ T Sbjct: 458 VAVKVLQDMGLPT 470 Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VEI QG + Sbjct: 550 ISETGGSHDKRFVMEVEIDEQKF-QGTGSN 578 >gi|308489344|ref|XP_003106865.1| hypothetical protein CRE_17085 [Caenorhabditis remanei] gi|308252753|gb|EFO96705.1| hypothetical protein CRE_17085 [Caenorhabditis remanei] Length = 725 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 5/103 (4%) Query: 130 GGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 G + K ++ + + Y + SGP H Sbjct: 36 HPHHWCGQHKFEADSPTNFYDYTTAKNKQKSAMCRVAEIARFNKLRHIYDLQDESGPAHK 95 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK--REGIWT 227 FTV + ++ +G S + A+Q +A LK + + T Sbjct: 96 KLFTVKLVLTPEESFEGSGPSIKRAQQASAEAALKGTKLPLPT 138 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 1/78 (1%) Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 + + + L + +K P +++ G F + V+ +G Sbjct: 396 MDPLYGHQINPVSRLIQVIQSKNQEHPTFELVAEHGASKYKEFVIRVKCGDEMR-EGRGP 454 Query: 207 SKRAAEQVAAAEVLKREG 224 +KR A++ AA +L+ G Sbjct: 455 NKRLAKRAAAEAMLETIG 472 Score = 43.8 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%) Query: 178 TFRSGPDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP HD ++ V A G K+ A+Q A A+++K Sbjct: 305 LKEEGPPHDRQYVVRCAFVTSAQVVKAEGIGRGKKKKIAQQEACAQLIKTI 355 Score = 41.8 bits (96), Expect = 0.076, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 25/99 (25%) Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 L T K + + + + P Sbjct: 155 VLQNVCRTLHYPTPDYIVCNPPVYPDPKHLVPEHILIPPTTLSMYHPQSPVAPIDSTRPQ 214 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V+V I G A G+ + A+Q AAA+ L Sbjct: 215 GPKLQAVMVHIDGKPVATGVGETYPLAKQDAAAKALIAL 253 >gi|320333355|ref|YP_004170066.1| double-stranded RNA-binding domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319754644|gb|ADV66401.1| double-stranded RNA binding domain protein [Deinococcus maricopensis DSM 21211] Length = 148 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + GP HDP F + + A G +KR AE+VA+ L Sbjct: 19 PHFDVQQDGPAHDPHFRADIRVGSQILASGEGRTKRDAERVASEAAL 65 >gi|226374647|gb|ACO52475.1| RNA transcript variant b adenosine deaminase [Loligo opalescens] Length = 687 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +++ ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 82 FQLMGQTGPVHAPTFNMKVEVNGEVF-EGAGPTKKKAKLQAAEKALR 127 >gi|226374645|gb|ACO52474.1| RNA transcript variant a adenosine deaminase [Loligo opalescens] Length = 786 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +++ ++GP H P F + VE++G +G +K+ A+ AA + L+ Sbjct: 181 FQLMGQTGPVHAPTFNMKVEVNGEVF-EGAGPTKKKAKLQAAEKALR 226 Score = 34.9 bits (78), Expect = 9.8, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD F + V+I+ QG S Sbjct: 60 VSESGPPHDRNFVMSVKINDDNV-QGAGRS 88 >gi|213511414|ref|NP_001133664.1| double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar] gi|209154860|gb|ACI33662.1| Double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar] Length = 701 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + ++V +GP H F V V + G +G SK+ A+++AA VL+ Sbjct: 290 NMPVNFEVLKEAGPPHMKSFMVRVAV-GEFCGEGEGKSKKIAKKLAATAVLEEL 342 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V + G A+G+ SK+ A++ Sbjct: 380 MNPISRLAQIQQAKKEKEPEYNMLTERGLPRRREFVMQVMVCGQC-AEGLGPSKKVAKKN 438 Query: 215 AAAEVLKREG 224 AA ++L+ G Sbjct: 439 AAEKMLELLG 448 Score = 44.1 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 14/146 (9%), Positives = 35/146 (23%), Gaps = 2/146 (1%) Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 V Q + S + + + + +E+ Sbjct: 108 VRLSLGDQHWEAEGTSIKKAQHSAAATALAQTTMPKPSMRNNTRNNTDCMTQTVELNSLC 167 Query: 139 VDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + K + + + + P + + + I G Sbjct: 168 MKLGMKPMYKPIDPYPGMRPPSFNYNIRAPGPYQRSMQQYYYPFPPVGPVLYHMELNIGG 227 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G +++ A+ AA++ LK Sbjct: 228 QQF-HGKGRTRQLAKHDAASKALKTL 252 Score = 38.4 bits (87), Expect = 0.69, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 1/65 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + L + PEYK+ GP H F+V + + + S Sbjct: 66 NMANPKEKTPMCLVNELARFNKIQPEYKLLCEQGPAHSKIFSVRLSLGDQHW-EAEGTSI 124 Query: 209 RAAEQ 213 + A+ Sbjct: 125 KKAQH 129 >gi|304307737|ref|NP_001182008.1| loquacious [Bombyx mori] gi|300669735|dbj|BAJ11656.1| loquacious [Bombyx mori] Length = 382 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G H+P F V ++ L A G SK+ A+ AA +L + Sbjct: 94 LQIEGMIHEPTFRYRVTVADL-FAMGTGRSKKEAKHSAAKALLDKL 138 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 1/71 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + R H T + H+ +FT++ + G SK+ A+ Sbjct: 173 WLRSCVCHDSGHHHLTMLKTMTMLIDQFQVCPHERQFTIICTLL-KRREVGTGKSKKLAK 231 Query: 213 QVAAAEVLKRE 223 + AA ++ + Sbjct: 232 RQAAYKMWQAL 242 >gi|321445499|gb|EFX60714.1| hypothetical protein DAPPUDRAFT_123225 [Daphnia pulex] Length = 145 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 2/99 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64 +EK IGY F N+ LL +A+THSS ++ ESY E++GDR+LG ++ + + Sbjct: 26 LEEVEKTIGYIFKNKLLLIQAMTHSSYKNNCLTESYNEQEWIGDRVLGFEMAKFVSLNCQ 85 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 S F +L S E + + + I++ + Sbjct: 86 D-TVDAKSATFATLTSNEFWAVLTVRHGIHKHIKLCDNN 123 >gi|70995776|ref|XP_752643.1| 60S ribosomal protein L3 [Aspergillus fumigatus Af293] gi|66850278|gb|EAL90605.1| 60S ribosomal protein L3 [Aspergillus fumigatus Af293] gi|159131396|gb|EDP56509.1| 60S ribosomal protein L3 [Aspergillus fumigatus A1163] Length = 363 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 77/248 (31%), Gaps = 29/248 (11%) Query: 2 SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + + + L R+ Y + L L +AL +S + + E L LG +L S L Sbjct: 81 ESAKLAALHARL-YLPSRLPLETLARALVDASADPNPDFNNESLATLGHDLLTNYTSEHL 139 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS------------------ 101 + + + V +T S +ARE + S Sbjct: 140 ICTYPRLPLTVIFAAMYAYVGPKTLSAMAREWGVEMASITSRVVYDNEFGDPVKEVADSA 199 Query: 102 -----DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FR 154 + A V +++ A+YL G A F +++ R L + Sbjct: 200 AQAVSETHGAQGVTAEQASATFVRAVMGAIYLHAGRPAAKRFFEQHILSRHLNISELFNF 259 Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 +L + P K+ +G P F V + +G S A Sbjct: 260 SQPARDLTRLCARENFERPVAKIISETGRKSRHPVFVVGIYSGQDKLGEGAGASLMEARS 319 Query: 214 VAAAEVLK 221 AA LK Sbjct: 320 RAAVAALK 327 >gi|9633665|ref|NP_051743.1| m29L [Myxoma virus] gi|6523884|gb|AAF14917.1|AF170726_33 m29L [Myxoma virus] gi|170664495|gb|ACB28652.1| m29L [Myxoma virus] gi|170664667|gb|ACB28823.1| m29L [recombinant virus 6918VP60-T2] gi|301134555|gb|ADK63669.1| m29L [Myxoma virus] Length = 115 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + + + R+G H P FT VV +SG + +K+ A + Sbjct: 38 WQTKNPCTVLNEYCQITFREWSINVTRAGQSHSPTFTAVVTVSGYSFKSATGSNKKEARK 97 Query: 214 VAAAEV 219 AA E Sbjct: 98 NAAKEA 103 >gi|141795447|gb|AAI34870.1| Sb:cb627 protein [Danio rerio] Length = 658 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + + +YK+ +SGP H P FT+ V++ G + SK+ A+ A Sbjct: 402 QPMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTVY-EASGSSKKTAKLHVAV 460 Query: 218 EVLKREGIWT 227 +VL+ G T Sbjct: 461 KVLQAMGYPT 470 Score = 34.9 bits (78), Expect = 7.9, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SG HD RF + VE+ G +G + Sbjct: 543 ISESGGSHDKRFVMEVEVDGQKF-RGAGPN 571 >gi|326671063|ref|XP_707047.3| PREDICTED: spermatid perinuclear RNA-binding protein isoform 2 [Danio rerio] Length = 690 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + + +YK+ +SGP H P FT+ V++ G + SK+ A+ A Sbjct: 402 QPMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTVY-EASGSSKKTAKLHVAV 460 Query: 218 EVLKREGIWT 227 +VL+ G T Sbjct: 461 KVLQAMGYPT 470 Score = 34.9 bits (78), Expect = 7.9, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SG HD RF + VE+ G +G + Sbjct: 543 ISESGGSHDKRFVMEVEVDGQKF-RGAGPN 571 >gi|7798620|gb|AAF69764.1| double-stranded RNA adenosine deaminase DRADA [Takifugu rubripes] Length = 1194 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + G E+ +T ++GP HD RF V++ ++ SK+AA Q+AA E + Sbjct: 585 VLMEYGQHSGNPIEFIMTGQAGPPHDTRFMYRVKVGENLFSEASAPSKKAARQLAAEEAV 644 Query: 221 KRE 223 K Sbjct: 645 KEL 647 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 22/46 (47%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+FT ++ G +K+ +Q AA L+ Sbjct: 727 VGQSGPPHEPKFTYQAKLGGRWFPAVCASNKKQGKQEAADAALRVL 772 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 19/45 (42%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 G E+ + +SGP HDPRF + V ++G S Sbjct: 477 MEYAQFLGQNCEFLLLDQSGPSHDPRFRMQVMLNGRQFPVAEASS 521 >gi|18640118|ref|NP_570192.1| SPV032 putative PKR inhibitor host range protein [Swinepox virus] gi|18448525|gb|AAL69771.1| SPV032 putative PKR inhibitor host range protein [Swinepox virus] Length = 177 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 29/92 (31%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 ++ + ++ + + SG H Sbjct: 73 NMNNESIEIHNPDHMFSDTIPYTKIIEWKNKNPITVLNEYCQITQRDWIIDIISSGQSHC 132 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 P FT + +SG+ G +K+ A+Q+AA E Sbjct: 133 PIFTASITVSGIKCKTGKGSTKKEAKQIAARE 164 >gi|126659516|ref|ZP_01730648.1| ribonuclease III (rnc) [Cyanothece sp. CCY0110] gi|126619155|gb|EAZ89892.1| ribonuclease III (rnc) [Cyanothece sp. CCY0110] Length = 328 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 5/143 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFN 61 S ++++I + F N LL +L+ S + ERLE LG+ +L L+I L++ Sbjct: 4 NSSLVQEKISFNFKNPELLFLSLSDPSYGKQINQPGSDNERLESLGETVLDLIIIDYLYH 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFMTSI-QADVV 119 HF +++ + L E + + L L + + + + +S + Sbjct: 64 HFPYLTISKMTALRDKLSEKERLTNLWFGLGLGESYPFLDVNEERHRLRVKSSNPFEKSL 123 Query: 120 ESLIAALYLDGGIEVAGTFVDKY 142 ++L+ A+++D G + +V+K Sbjct: 124 KALVGAIHIDRGFSQSYNWVNKQ 146 >gi|326507276|dbj|BAJ95715.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 580 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 T RSGP H P FT VE++G +K+ A++ AA LK+ Sbjct: 104 PMYTTIRSGPGHTPTFTCTVELAGRIFTGSPGKTKKQAQKNAAMAAWSELKQL 156 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 R GPDH PRF V +G + G + R AE AA L Sbjct: 14 CFNLPSYACIREGPDHAPRFKATVTFNGESFESPGFYSTLRQAEHAAAEVALNEL 68 >gi|148681491|gb|EDL13438.1| mCG2026 [Mus musculus] Length = 221 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 PEY VT SGP H FT+ + G SK+ A++ AA ++L Sbjct: 28 WRLPEYMVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNAAVKML 77 >gi|307182700|gb|EFN69824.1| Interferon-inducible double stranded RNA-dependent protein kinase activator A-like protein [Camponotus floridanus] Length = 364 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 YKV GPDH FT+ V I G +G K+ A+Q AA +L+ Sbjct: 133 YKVVDERGPDHMKMFTIEVSI-GSICEKGSASCKKIAKQEAAKNLLQHL 180 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF V+ A+G SK+ A+ AA ++L Sbjct: 35 RFVCRVDCKEFN-AEGEGNSKKDAKHNAAEKMLSLL 69 >gi|92097815|gb|AAI15333.1| Sb:cb627 protein [Danio rerio] Length = 658 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + + +YK+ +SGP H P FT+ V++ G + SK+ A+ A Sbjct: 402 QPMNALMRLNRIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTVY-EASGSSKKTAKLHVAV 460 Query: 218 EVLKREGIWT 227 +VL+ G T Sbjct: 461 KVLQAMGYPT 470 Score = 34.9 bits (78), Expect = 7.9, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SG HD RF + VE+ G +G + Sbjct: 543 ISESGGSHDKRFVMEVEVDGQKF-RGAGPN 571 >gi|297692032|ref|XP_002823375.1| PREDICTED: RISC-loading complex subunit TARBP2-like [Pongo abelii] Length = 369 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 +E K PEY VT SGP H FT+ + G SK+ A++ AAA Sbjct: 164 CLPSKELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-HFIEIGSGTSKKLAKRNAAA 222 Query: 218 EVL 220 ++L Sbjct: 223 KML 225 >gi|291409985|ref|XP_002721271.1| PREDICTED: staufen [Oryctolagus cuniculus] Length = 862 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G +G SK+ +++ AA VL+ Sbjct: 499 SGPPHMRNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 541 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ A+G +K+ A++ Sbjct: 574 MNPISRLAQIQQAKKEREPEYLLLTERGLPRRREFVMQVKVGNHT-AEGTGTNKKVAKRN 632 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 633 AAENMLEILG 642 >gi|7770277|gb|AAF69674.1| double-stranded RNA-specific editase [Tetraodon fluviatilis] Length = 1255 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + G E+ +T ++GP HD RF V++ ++ SK+AA Q+AA E + Sbjct: 633 VLMDYSQHSGNAIEFIMTGQAGPPHDTRFMYRVKVGENLFSEASAPSKKAARQLAAEEAV 692 Query: 221 KRE 223 K Sbjct: 693 KEL 695 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 22/46 (47%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+FT ++ G +K+ +Q AA L+ Sbjct: 775 VGQSGPPHEPKFTYQAKLGGRWFPPVCASNKKQGKQEAADAALRVL 820 Score = 38.0 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 19/45 (42%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 G E+ + +SGP HDPRF + V ++G S Sbjct: 504 MEYAQFLGQNCEFLLLDQSGPSHDPRFRMQVMLNGRLFPVAEASS 548 >gi|149022335|gb|EDL79229.1| protein kinase, interferon inducible double stranded RNA dependent activator, isoform CRA_a [Rattus norvegicus] Length = 230 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 1/109 (0%) Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 + ++ S+ + + + + V K K + + LQE A P Sbjct: 1 MHYHLLSSVEEVILFNNTLIMFSFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLP 60 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 EY ++ GP H +T + + G SK+ A++ AA + L + Sbjct: 61 EYTLSQEGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 108 >gi|47225372|emb|CAG11855.1| unnamed protein product [Tetraodon nigroviridis] Length = 1598 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + G E+ +T ++GP HD RF V++ ++ SK+AA Q+AA E + Sbjct: 447 VLMEYSQHSGNAIEFIMTGQAGPPHDTRFMYRVKVGENLFSEASAPSKKAARQLAAEEAV 506 Query: 221 KRE 223 K Sbjct: 507 KEL 509 Score = 38.0 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 19/45 (42%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 G E+ + +SGP HDPRF + V ++G S Sbjct: 317 MEYAQFLGQNCEFLLLDQSGPSHDPRFRMQVMLNGRLFPVAEASS 361 >gi|301774246|ref|XP_002922574.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific adenosine deaminase-like [Ailuropoda melanoleuca] Length = 1144 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 1/103 (0%) Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + + + + + + ++ + L E+A T E+ Sbjct: 411 NSIHAAPGEFRAIMEMPSFYSHGWPRCSPYKKLTECQLKNPISGLLEYAQ-FASQTCEFN 469 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + + GP H+PRF V I G SK+ A+Q AA + Sbjct: 470 LLEQRGPPHEPRFKFQVIIGGREFPPAEAGSKKVAKQDAALKA 512 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K G + E+++ R GP HDP+F V + SK+ A+Q+AA E +K Sbjct: 569 CVHKLGSSCEFRLLSREGPAHDPKFQYCVAMGAHTFPTASAPSKKVAKQMAAEEAVKAL 627 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 694 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 739 >gi|149048040|gb|EDM00616.1| adenosine deaminase, RNA-specific, isoform CRA_a [Rattus norvegicus] Length = 634 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 37/95 (38%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 + +E + + + F + K G + E+++ + GP HDP+ Sbjct: 21 NCPMEEDPEKPAESQPPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 80 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 81 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 115 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 178 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 223 >gi|332017864|gb|EGI58524.1| Protein SON [Acromyrmex echinatior] Length = 808 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQ 213 + + L E+ K P Y++ F SGPDH F V+++G+ + S K+ A+ Sbjct: 734 KHPVSLLGEYCTKKKLGAPVYELCFESGPDHRKNFLFKVKVNGIEYKPSVASSNKKQAKA 793 Query: 214 VAAAEVLKREGIW 226 AA L+ G+ Sbjct: 794 EAAQICLQNLGLL 806 >gi|297668947|ref|XP_002812678.1| PREDICTED: LOW QUALITY PROTEIN: interferon-inducible double stranded RNA-dependent protein kinase activator A-like [Pongo abelii] Length = 313 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 90 RAAEAAINILKANASICFAVPDPXMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G SK+ A++ AA + L + Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 62 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100 >gi|201023367|ref|NP_001128425.1| R2D2 protein [Tribolium castaneum] gi|270009455|gb|EFA05903.1| hypothetical protein TcasGA2_TC008716 [Tribolium castaneum] Length = 320 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 5/120 (4%) Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 + + + L G + + V ++ Q + Sbjct: 56 GRSKQVAKHNAASKALEILAEQGLYDPSSNPVQEFNAQSHRNESDSPQKPPVNFIGNLKD 115 Query: 168 KFG----VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE+K GP H FT I+ Q +K+ A+Q+AA E+L++ Sbjct: 116 MCCEFKLPYPEFKEISDVGPPHCREFTYECCIA-SITTQATANTKKQAKQLAAREMLEKI 174 Score = 46.1 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 S + + LQE+ + PEY + H+ F V ++ G SK Sbjct: 1 MSRQNTKTPAMVLQEFTMKRGFSPPEYILVMSKTGTHENEFHYKVNVAN-VCGLGFGRSK 59 Query: 209 RAAEQVAAAEVLKRE 223 + A+ AA++ L+ Sbjct: 60 QVAKHNAASKALEIL 74 >gi|33322517|gb|AAQ06986.1|AF496312_1 ribonuclease III [Lactobacillus delbrueckii subsp. lactis] Length = 41 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 17/34 (50%) Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V V + G A G +K+ AEQ AA+ L+ Sbjct: 1 VEVLVDGKKXASGEGRNKKKAEQDAASHALEHLN 34 >gi|47220271|emb|CAG03305.1| unnamed protein product [Tetraodon nigroviridis] Length = 570 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%) Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + K + + ++ EY++T ++GP H+P FT+VV+++G + Sbjct: 371 QKRFQRKSFTEDFSMNAVMRLNQYKRGLEYRLTSQTGPVHEPVFTMVVDVNGKTY-EATG 429 Query: 206 CSKRAAEQVAAAEV---LKREGIWT 227 SK+AA+ A + L G+ T Sbjct: 430 PSKKAAKLNVATKARLVLLDLGLPT 454 >gi|111185526|gb|AAH60382.2| LOC398937 protein [Xenopus laevis] Length = 426 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ ++VT +GP H F V + G G SK+ +++ AA VL+ Sbjct: 282 NMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGNGEGKSKKISKKNAAIAVLEEL 334 >gi|68533781|gb|AAH99038.1| LOC398937 protein [Xenopus laevis] Length = 380 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ ++VT +GP H F V + G G SK+ +++ AA VL+ Sbjct: 305 NMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGNGEGKSKKISKKNAAIAVLEEL 357 >gi|307213091|gb|EFN88613.1| Double-stranded RNA-binding protein Staufen-like protein 2 [Harpegnathos saltator] Length = 797 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 1/71 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 + L V +Y++T GP H RFTV +++ S + A Sbjct: 188 NMKEKTPMCLLNELARFNRVQHQYRLTNEQGPAHKKRFTVTLKLGEEEY-IAEGPSIKKA 246 Query: 212 EQVAAAEVLKR 222 + AA E L + Sbjct: 247 QHSAATEALTK 257 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SG H F + G SK+ +++ AA +L+ Sbjct: 437 VSESGKPHIRTFMTKCTVGDKV-TVGEGSSKKVSKKRAAELMLEELK 482 >gi|58332604|ref|NP_001011376.1| double-stranded RNA-binding protein Staufen homolog 2 [Xenopus (Silurana) tropicalis] gi|73919461|sp|Q5M7M7|STAU2_XENTR RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2 gi|56788853|gb|AAH88555.1| staufen, RNA binding protein, homolog 2 [Xenopus (Silurana) tropicalis] Length = 624 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A G +K+ A++ Sbjct: 324 MNPISRLAQIQQAKKEKEPEYVLLSERGIQRRREFVMQVKV-GEETATGTGPNKKTAKRN 382 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 383 AAEAMLLQLG 392 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L + P+YK+ GP H FTV + + Q S + Sbjct: 1 MTNPKEKTPMCLVNELARFNRIQPQYKLLDERGPAHSKLFTVQLTLGEQTW-QAESTSIK 59 Query: 210 AAEQVAAAEVL 220 A+ AA+ L Sbjct: 60 KAQHAAASLAL 70 >gi|296817299|ref|XP_002848986.1| RNase3 domain-containing protein [Arthroderma otae CBS 113480] gi|238839439|gb|EEQ29101.1| RNase3 domain-containing protein [Arthroderma otae CBS 113480] Length = 378 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 80/230 (34%), Gaps = 28/230 (12%) Query: 17 FANRSLLEKALTHSSISHS-------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 + L TH+ I ++SY+RLE LGD + L+ + L++ +F + G Sbjct: 115 IKDEGLKSAVFTHTGIVERGPGSSLCSEKSYDRLEVLGDAYIELISTRLIWENFPTLPAG 174 Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +++ ++V ET +Q A ++ +SD R V T I+ DV E+ +AA + Sbjct: 175 KMAQARETMVKNETLAQYATAYGFDELLKTTSDYR-SVPKRWTKIRGDVFEAYVAAAIIS 233 Query: 130 GGIEVAGTFVDKYWKQRALKSGK-----FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + K + + K T K D Sbjct: 234 DPKDGLRAVESWLTQLWLPKLADVKLPLPPAGPEHGNKISFKDKLAATVMSKGIRLQYID 293 Query: 185 HDP---------RFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220 P F + V ++G G SK A AA L Sbjct: 294 EKPPQREGGLVTSF-IGVYLTGWGYERKHLGSGSGLSKTEAGNEAALRAL 342 >gi|254693019|gb|ACT79359.1| RE17094p [Drosophila melanogaster] Length = 392 Score = 56.5 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y + G + KY + + K + + G YK+ ++GP H Sbjct: 25 YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 82 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P FT+ VE+ G G SK+ A AAA L+ Sbjct: 83 PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|240268596|gb|ACS52172.1| ADARe2 [Drosophila melanogaster] gi|260166757|gb|ACX32990.1| LD32961p [Drosophila melanogaster] Length = 392 Score = 56.5 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y + G + KY + + K + + G YK+ ++GP H Sbjct: 25 YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 82 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P FT+ VE+ G G SK+ A AAA L+ Sbjct: 83 PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|240268594|gb|ACS52171.1| ADARe1 [Drosophila melanogaster] Length = 355 Score = 56.5 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y + G + KY + + K + + G YK+ ++GP H Sbjct: 25 YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 82 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P FT+ VE+ G G SK+ A AAA L+ Sbjct: 83 PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|4164311|emb|CAA22774.1| EG:BACN35H14.1 [Drosophila melanogaster] Length = 653 Score = 56.5 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y + G + KY + + K + + G YK+ ++GP H Sbjct: 25 YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 82 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P FT+ VE+ G G SK+ A AAA L+ Sbjct: 83 PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|7546827|gb|AAF63703.1| double-stranded RNA-specific adenosine deaminase a [Drosophila melanogaster] Length = 632 Score = 56.5 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y + G + KY + + K + + G YK+ ++GP H Sbjct: 25 YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 82 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P FT+ VE+ G G SK+ A AAA L+ Sbjct: 83 PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|7546826|gb|AAF63702.1| alternative double-stranded RNA-specific adenosine deaminase b [Drosophila melanogaster] Length = 669 Score = 56.5 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y + G + KY + + K + + G YK+ ++GP H Sbjct: 25 YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 82 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P FT+ VE+ G G SK+ A AAA L+ Sbjct: 83 PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|85724778|ref|NP_001033821.1| adenosine deaminase acting on RNA, isoform C [Drosophila melanogaster] gi|84798392|gb|ABC67164.1| adenosine deaminase acting on RNA, isoform C [Drosophila melanogaster] gi|294712595|gb|ADF29633.1| SD06892p [Drosophila melanogaster] Length = 186 Score = 56.5 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y + G + KY + + K + + G YK+ ++GP H Sbjct: 25 YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 82 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P FT+ VE+ G G SK+ A AAA L+ Sbjct: 83 PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|45551201|ref|NP_726761.2| adenosine deaminase acting on RNA, isoform B [Drosophila melanogaster] gi|45446775|gb|AAN09057.2| adenosine deaminase acting on RNA, isoform B [Drosophila melanogaster] Length = 628 Score = 56.5 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y + G + KY + + K + + G YK+ ++GP H Sbjct: 21 YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 78 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P FT+ VE+ G G SK+ A AAA L+ Sbjct: 79 PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 112 >gi|24639162|ref|NP_569940.2| adenosine deaminase acting on RNA, isoform A [Drosophila melanogaster] gi|13448047|gb|AAK26850.1| pre-mRNA adenosine deaminase [Drosophila melanogaster] gi|22831515|gb|AAF45665.2| adenosine deaminase acting on RNA, isoform A [Drosophila melanogaster] Length = 632 Score = 56.5 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y + G + KY + + K + + G YK+ ++GP H Sbjct: 25 YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 82 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P FT+ VE+ G G SK+ A AAA L+ Sbjct: 83 PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|61218669|sp|Q9NII1|ADAR_DROME RecName: Full=Double-stranded RNA-specific editase Adar; AltName: Full=Adenosine deaminase that act on RNA; AltName: Full=Pre-mRNA adenosine deaminase; AltName: Full=RNA-editing deaminase 1; AltName: Full=RNA-editing enzyme 1; AltName: Full=dADAR; AltName: Full=dsRNA adenosine deaminase Length = 676 Score = 56.5 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y + G + KY + + K + + G YK+ ++GP H Sbjct: 32 YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 89 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P FT+ VE+ G G SK+ A AAA L+ Sbjct: 90 PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 123 >gi|327269765|ref|XP_003219663.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2-like [Anolis carolinensis] Length = 721 Score = 56.5 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + A+ PEY + G F + V++ G G+ +K+ A++ Sbjct: 419 MNPISRLAQIQQARREKEPEYLLLSEKGIPRRREFVMQVKV-GNYITTGIGPNKKIAKRN 477 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 478 AAEVMLLQLG 487 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 52/177 (29%), Gaps = 10/177 (5%) Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 G + + A +N +L + + Sbjct: 219 GLAMKRGEPAIYRPLDQKPAPNYNFRGMYNQRYHCPVPKTFHVQLTVGDHEFFGEGRTRQ 278 Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 + + AL + + + + + GK ++ + Sbjct: 279 AARH---------NAAMKALQVLQNEPIPPKLPENTESNKEAEEGKDANKSEISIVFEIA 329 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K + ++VT SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 330 LKRNMPVSFEVTKESGPPHMKSFVTHVSV-GEFSAEGEGNSKKLSKKRAAIAVLQEL 385 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 1/63 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L + P YK GP H FTV + + + S + A AA Sbjct: 126 PMCLVNELARFSRLQPVYKFLNEQGPAHAKTFTVQLTLGDQTW-EAEGSSIKKAHHSAAR 184 Query: 218 EVL 220 L Sbjct: 185 RAL 187 >gi|194375538|dbj|BAG56714.1| unnamed protein product [Homo sapiens] Length = 288 Score = 56.5 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 +YK+ ++GP H P FT+ VE+ G + + SK+ A+ A +VL+ G+ T Sbjct: 15 QYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPT 67 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 142 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 170 >gi|269101846|ref|ZP_06154543.1| ribonuclease III [Photobacterium damselae subsp. damselae CIP 102761] gi|268161744|gb|EEZ40240.1| ribonuclease III [Photobacterium damselae subsp. damselae CIP 102761] Length = 178 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 3/163 (1%) Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + +I+ L++ F + EG++S +LV +T +++ RE +L + + K Sbjct: 1 MSFVIADDLYHRFPNVDEGDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFR 60 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAK 168 SI AD VE++I A+YLD IE V +++ R ++D KT LQE + Sbjct: 61 RDSILADCVEAIIGAIYLDSDIEKVRNIVLDWYQSRLETIQPGVNQKDPKTRLQECLQGR 120 Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 P Y VT G H+ FTV E++GL P G S+R Sbjct: 121 RLPLPAYTVTKVHGEAHNQEFTVQCEVTGLDKPVVGKGGSRRK 163 >gi|154319367|ref|XP_001559001.1| hypothetical protein BC1G_02635 [Botryotinia fuckeliana B05.10] gi|150857066|gb|EDN32258.1| hypothetical protein BC1G_02635 [Botryotinia fuckeliana B05.10] Length = 425 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 74/248 (29%), Gaps = 43/248 (17%) Query: 19 NRSLLEKALTH--SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + +L + TH + SYERLE++GD + + + L+ F + G+ S Sbjct: 148 DPTLELASFTHHGRTNGSVTDLSYERLEWVGDAYIYTISTLLISQTFPALLPGKCSQLRE 207 Query: 77 SLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE-- 133 LV T + AR+ + + D+ E+ +AA+ L Sbjct: 208 RLVKNVTLADFARKYGFEKRAKLPEDTIHPMKEPEKIKAMGDIFEAYVAAIVLADPENGV 267 Query: 134 -----------------------------VAGTFVDKYWKQRALKSGKFRRDAKTELQEW 164 + + + K + K +LQ Sbjct: 268 SRASEWLKSLWAMVLSKEIQQEERNEDKLDSPLWRLRGNVDHVQTKTKTVLNPKEKLQMA 327 Query: 165 AHAKFGVTPEYKVTFRSGPDHDP--RFTVVVEISG-----LAPAQGMDCSKRAAEQVAAA 217 ++K + + FTV V + G G K+ A AA Sbjct: 328 LNSKVSKLTYKDIGTAKKDKNTKLAVFTVGVFLDGWGEVDKQIGFGSANGKKEAGFKAAE 387 Query: 218 EVL--KRE 223 L K+ Sbjct: 388 MALNNKKL 395 >gi|291391824|ref|XP_002712359.1| PREDICTED: protein kinase, interferon-inducible double stranded RNA dependent activator [Oryctolagus cuniculus] Length = 314 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 91 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 150 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G SK+ A++ AA + L + Sbjct: 151 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 192 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P FT V + + G SK+ A+ AA + Sbjct: 65 PTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 101 >gi|194222350|ref|XP_001497407.2| PREDICTED: similar to protein kinase, interferon-inducible double stranded RNA dependent activator [Equus caballus] Length = 364 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 141 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 200 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G SK+ A++ AA + L + Sbjct: 201 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 242 Score = 48.0 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 113 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 151 >gi|17568157|ref|NP_508196.1| STAUfen (dsRNA binding protein) homolog family member (stau-1) [Caenorhabditis elegans] gi|1519663|gb|AAB07566.1| Hypothetical protein F55A4.5 [Caenorhabditis elegans] Length = 705 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 5/103 (4%) Query: 130 GGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 G + + + + Y + SGP H Sbjct: 48 HPQHWCGQHKFEADSPTNFYDYTNAKEKEKSAMCRVAEIARFNKLRHVYNLQDESGPAHK 107 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK--REGIWT 227 FTV + ++ +G S + A+Q +A LK + + T Sbjct: 108 KLFTVKLVLTEAETFEGSGTSIKRAQQASAEAALKGTKLPLPT 150 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 1/93 (1%) Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 + ++ + + + L + AK P +++ G F + Sbjct: 389 MNREPKRKTIVKDKKMDPLYGHQINPVSRLIQVTQAKSKEHPTFELVAEHGVSKYKEFII 448 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V+ +G +KR A++ AA +L+ G Sbjct: 449 QVKYGDDVQ-EGKGPNKRLAKRAAAEAMLESIG 480 Score = 43.8 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 5/73 (6%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQ--GMDCS 207 ++ + + V ++V GP HD ++ V + A+ G Sbjct: 288 HKQKSVISDIHEKAYQLKVNVVFEVLKEEGPPHDRQYVVRCAFVTSGNVVKAEAVGKGKK 347 Query: 208 KRAAEQVAAAEVL 220 K++A+Q A ++L Sbjct: 348 KKSAQQEACTQLL 360 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 26/96 (27%) Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 L L + A + + P Sbjct: 167 VLQNVCRTLQYQMPNYISCNPPVYPDPGCPLPEHILLPLESMALYAPPFPTLPIDPARPQ 226 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V+V I+G + A G+ + A+Q AAA+ L Sbjct: 227 GPKLQAVIVNINGKSIATGIGETYPLAKQDAAAKAL 262 >gi|62901980|gb|AAY18941.1| DKFZp564I0123 [synthetic construct] Length = 337 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 114 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 173 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G SK+ A++ AA + L + Sbjct: 174 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 215 Score = 48.0 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 86 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 124 >gi|50308581|ref|XP_454293.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49643428|emb|CAG99380.1| KLLA0E07635p [Kluyveromyces lactis] Length = 315 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 62/227 (27%), Gaps = 26/227 (11%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK------------- 67 SLL + LT S S L G +L L +++ L + Sbjct: 68 SLLSRCLTCRS-SGEVNYDNVSLNIFGKSLLTLAVTSELMKKYPRLPGVVLNAAVDAYIN 126 Query: 68 --------EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 V + + L + + + + A V Sbjct: 127 DHVLSNVGRSWGIEPETQSVVDRYAKKENVTITLGKLRYFQNSVDELHNFTENNAMAVAV 186 Query: 120 ESLIAALY---LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 S+ AA+Y D ++ +K EL + P K Sbjct: 187 RSIFAAVYSVDKDFNQTHKFIADHILSRKLDVKDLFAFEQPTRELAALCRRQGLERPVSK 246 Query: 177 VTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + +G P F V V +G S + A+ AA + L + Sbjct: 247 LLAENGRLSKSPLFIVGVFSGEEKLGEGYGSSLKEAKARAATDALLK 293 >gi|30584929|gb|AAP36730.1| Homo sapiens protein kinase, interferon-inducible double stranded RNA dependent activator [synthetic construct] gi|33303847|gb|AAQ02437.1| protein kinase, interferon-inducible double stranded RNA dependent activator [synthetic construct] gi|60653869|gb|AAX29627.1| protein kinase interferon-inducible double stranded RNA dependent activator [synthetic construct] Length = 314 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 90 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G SK+ A++ AA + L + Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 62 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100 >gi|67078460|ref|NP_001019951.1| interferon-inducible double stranded RNA-dependent protein kinase activator A [Rattus norvegicus] gi|81908679|sp|Q4V8C7|PRKRA_RAT RecName: Full=Interferon-inducible double stranded RNA-dependent protein kinase activator A; AltName: Full=Protein activator of the interferon-induced protein kinase; AltName: Full=Protein kinase, interferon-inducible double stranded RNA-dependent activator gi|66910624|gb|AAH97446.1| Protein kinase, interferon inducible double stranded RNA dependent activator [Rattus norvegicus] Length = 313 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 90 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G SK+ A++ AA + L + Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 62 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100 >gi|224146029|ref|XP_002325853.1| predicted protein [Populus trichocarpa] gi|222862728|gb|EEF00235.1| predicted protein [Populus trichocarpa] Length = 291 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 29/90 (32%) Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 + ++ + + + A + G T +SG H P F Sbjct: 196 SCERMGPPHAIRFKCKFTINGQTYESREYFPTLSKAEKREGCGFPTYCTEKSGEAHAPTF 255 Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 VEI G++ +K+ AE AA Sbjct: 256 ISTVEIDGVSFTGKEARTKKQAEMSAAKIA 285 >gi|301766900|ref|XP_002918870.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A-like [Ailuropoda melanoleuca] Length = 313 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 90 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G SK+ A++ AA + L + Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 62 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100 >gi|4505581|ref|NP_003681.1| interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 1 [Homo sapiens] gi|109100224|ref|XP_001098685.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 2 [Macaca mulatta] gi|114581964|ref|XP_515940.2| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 2 [Pan troglodytes] gi|332209454|ref|XP_003253827.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 1 [Nomascus leucogenys] gi|74735517|sp|O75569|PRKRA_HUMAN RecName: Full=Interferon-inducible double stranded RNA-dependent protein kinase activator A; AltName: Full=PKR-associated protein X; AltName: Full=PKR-associating protein X; AltName: Full=Protein activator of the interferon-induced protein kinase; AltName: Full=Protein kinase, interferon-inducible double stranded RNA-dependent activator gi|4927416|gb|AAD33099.1|AF083033_1 PKR-associating protein RAX [Homo sapiens] gi|3290198|gb|AAC25672.1| protein activator of the interferon-induced protein kinase [Homo sapiens] gi|12052756|emb|CAB66550.1| hypothetical protein [Homo sapiens] gi|14495717|gb|AAH09470.1| Protein kinase, interferon-inducible double stranded RNA dependent activator [Homo sapiens] gi|30583325|gb|AAP35907.1| protein kinase, interferon-inducible double stranded RNA dependent activator [Homo sapiens] gi|49065476|emb|CAG38556.1| PRKRA [Homo sapiens] gi|61362125|gb|AAX42165.1| protein kinase interferon-inducible double stranded RNA dependent activator [synthetic construct] gi|61362132|gb|AAX42166.1| protein kinase interferon-inducible double stranded RNA dependent activator [synthetic construct] gi|62630137|gb|AAX88882.1| unknown [Homo sapiens] gi|119631441|gb|EAX11036.1| protein kinase, interferon-inducible double stranded RNA dependent activator, isoform CRA_c [Homo sapiens] gi|158254634|dbj|BAF83290.1| unnamed protein product [Homo sapiens] gi|190689557|gb|ACE86553.1| protein kinase, interferon-inducible double stranded RNA dependent activator protein [synthetic construct] gi|307685745|dbj|BAJ20803.1| protein kinase, interferon-inducible double stranded RNA dependent activator [synthetic construct] Length = 313 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 90 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G SK+ A++ AA + L + Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 62 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100 >gi|321460750|gb|EFX71789.1| hypothetical protein DAPPUDRAFT_326825 [Daphnia pulex] Length = 204 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 5/150 (3%) Query: 9 LEKRIGYAFANRSLLEKALTH--SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LEK +GY F N+ L+ ALTH S+ + + +R E LGD+ LG LI + + + Sbjct: 38 LEKILGYEFQNKDNLKLALTHTISNPTKCPSKDSDRSESLGDKFLGALIMVNCYKTYPTY 97 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 GEL+ + + +T + +A A R + + AD+ E++ A++ Sbjct: 98 GAGELANLTSMITCNDTFAVLAV---PALIPTTIPGERISIEIDYPKVYADLFEAVAASI 154 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 Y+D + + R + Sbjct: 155 YVDCNEDFNTFRRVFFAIMRETIDNFMTNN 184 >gi|218283082|ref|ZP_03489177.1| hypothetical protein EUBIFOR_01763 [Eubacterium biforme DSM 3989] gi|218216151|gb|EEC89689.1| hypothetical protein EUBIFOR_01763 [Eubacterium biforme DSM 3989] Length = 198 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 1/150 (0%) Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 F +EG+++ V T + R+L F+R+ K SI AD Sbjct: 31 YFLMEPKMREGQMTTLRAQTVCESTLYVLNRQLGWYEFLRLGVGEEKTGGRNRESILADQ 90 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177 E+ I A+Y+D G V + KY K + + D KT LQE A T +YK+ Sbjct: 91 FEACIGAIYIDQGYHVCDEILTKYMKPVFKQEKSEAVTDYKTHLQEVIQADSRKTIQYKL 150 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 GP + P FT+ V + + QG + Sbjct: 151 LEEKGPSNAPTFTMGVYLDDILLGQGTSST 180 >gi|62897775|dbj|BAD96827.1| protein kinase, interferon-inducible double stranded RNA dependent activator variant [Homo sapiens] Length = 313 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 90 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G SK+ A++ AA + L + Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 62 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100 >gi|195403581|ref|XP_002060356.1| GJ18414 [Drosophila virilis] gi|194147402|gb|EDW63114.1| GJ18414 [Drosophila virilis] Length = 633 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 3/118 (2%) Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 +F+ + E + + + + K + Sbjct: 3 NSVNSNFVQHVVTASSEGNMNGYNRKSPQKRRYDMPKYAVPPKKKSGKERVPQPKNTVAM 62 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + G YK+ ++GP H P FT+ VE+ G G SK+ A AAA L+ Sbjct: 63 LNELRHG--LIYKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATALR 117 >gi|158261305|dbj|BAF82830.1| unnamed protein product [Homo sapiens] Length = 479 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A G +K+ A++ Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 333 AAGAMLLQLG 342 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%) Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + + + R N + + +++++ + T A + Sbjct: 81 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + A L + + + + + + E A + V S Sbjct: 141 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H F V + G A+G SK+ +++ AA VL+ Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|332031602|gb|EGI71074.1| Double-stranded RNA-binding protein Staufen-like protein 2 [Acromyrmex echinatior] Length = 804 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 1/71 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 + L + +Y++T GP H RFTV +++ S + A Sbjct: 194 NMKEKTPMCLLNELARFNRIQHQYRLTNEQGPAHKKRFTVTLKLGEEEY-VAEGPSIKKA 252 Query: 212 EQVAAAEVLKR 222 + AA E L + Sbjct: 253 QHSAATEALTK 263 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SG H F + G G SK+ +++ AA +L Sbjct: 443 VSESGKPHIRTFMTKCTV-GEKVTVGEGSSKKVSKKRAAELMLDELK 488 >gi|322800091|gb|EFZ21197.1| hypothetical protein SINV_10966 [Solenopsis invicta] Length = 804 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 1/71 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 + L + +Y++T GP H RFTV +++ S + A Sbjct: 195 NMKEKTPMCLLNELARFNRIQHQYRLTNEQGPAHKKRFTVTLKLGEEEY-VAEGPSIKKA 253 Query: 212 EQVAAAEVLKR 222 + AA E L + Sbjct: 254 QHSAATEALTK 264 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SG H F + G G SK+ +++ AA +L Sbjct: 443 VSESGKPHIRTFMTKCTV-GEKVTVGEGSSKKVSKKRAAELMLDELK 488 >gi|301628882|ref|XP_002943575.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific adenosine deaminase-like [Xenopus (Silurana) tropicalis] Length = 1170 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 27/52 (51%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 E+++ + GP HDP+FT V I + SK+ A+Q+AA ++ Sbjct: 592 MCEFQLVSQEGPPHDPKFTYTVRIGNQTFPPVVANSKKMAKQLAAEAAVREL 643 Score = 38.4 bits (87), Expect = 0.73, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 9/113 (7%) Query: 104 RKDVCSFMTSIQADVVESLIAALYLD---------GGIEVAGTFVDKYWKQRALKSGKFR 154 + + + + + ++ A D E + R K R Sbjct: 401 DFENGKWASDDIPEAMNAMNAMNQSDVLVGIPEAEIHNEFTQAYEPVKEFNRLEKLLACR 460 Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 ++ + +SGP HDPRF + I G + S Sbjct: 461 EKNPVSGLLEFTHYCSQHCDFVLLNQSGPSHDPRFKIQAVIDGRSFPVAEASS 513 >gi|195447262|ref|XP_002071135.1| GK25300 [Drosophila willistoni] gi|194167220|gb|EDW82121.1| GK25300 [Drosophila willistoni] Length = 720 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 3/104 (2%) Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 ++E ++ + G + + + K + + G+T YK+ Sbjct: 104 IIERIMNGYNREAGKKRRYEMPQYAVSPKKKAIKERIPQPKNTVAMLNELRHGLT--YKM 161 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++GP H P FT+ V + G G SK+ A AAA L+ Sbjct: 162 ESQTGPVHAPLFTISVVVDGQKY-MGQGRSKKVARIEAAATALR 204 >gi|74004908|ref|XP_545545.2| PREDICTED: similar to protein kinase, interferon-inducible double stranded RNA dependent activator [Canis familiaris] gi|194043952|ref|XP_001927740.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A [Sus scrofa] Length = 313 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 90 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G SK+ A++ AA + L + Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 62 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100 >gi|6755162|ref|NP_036001.1| interferon-inducible double stranded RNA-dependent protein kinase activator A [Mus musculus] gi|81882073|sp|Q9WTX2|PRKRA_MOUSE RecName: Full=Interferon-inducible double stranded RNA-dependent protein kinase activator A; AltName: Full=PKR-associated protein X; AltName: Full=PKR-associating protein X; Short=RAX; AltName: Full=Protein activator of the interferon-induced protein kinase; AltName: Full=Protein kinase, interferon-inducible double stranded RNA-dependent activator gi|4927414|gb|AAD33098.1|AF083032_1 PKR-associating protein RAX [Mus musculus] gi|15030117|gb|AAH11311.1| Protein kinase, interferon inducible double stranded RNA dependent activator [Mus musculus] gi|74196321|dbj|BAE33056.1| unnamed protein product [Mus musculus] gi|123233430|emb|CAM25296.1| protein kinase, interferon inducible double stranded RNA dependent activator [Mus musculus] gi|148695265|gb|EDL27212.1| protein kinase, interferon inducible double stranded RNA dependent activator, isoform CRA_a [Mus musculus] Length = 313 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 90 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G SK+ A++ AA + L + Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 62 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100 >gi|328784563|ref|XP_003250468.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 [Apis mellifera] Length = 763 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 1/71 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 + L + +Y++T GP H RFTV +++ S + A Sbjct: 178 NMKEKTPMCLLNELARFNKIQHQYRLTNEQGPAHKKRFTVTLKLGEEEY-VAEGPSIKKA 236 Query: 212 EQVAAAEVLKR 222 + AA E L + Sbjct: 237 QHSAATEALTK 247 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G H F + G SK+ +++ AA +L+ Sbjct: 424 VSEIGKPHIRTFRTKCTVGDKV-TLGEGPSKKVSKKHAAEFMLEELN 469 >gi|149022336|gb|EDL79230.1| protein kinase, interferon inducible double stranded RNA dependent activator, isoform CRA_b [Rattus norvegicus] Length = 313 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 90 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G SK+ A++ AA + L + Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 62 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100 >gi|168021239|ref|XP_001763149.1| predicted protein [Physcomitrella patens subsp. patens] gi|162685632|gb|EDQ72026.1| predicted protein [Physcomitrella patens subsp. patens] Length = 496 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 46/285 (16%), Positives = 81/285 (28%), Gaps = 66/285 (23%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI-------------SHSYQESYER-------- 42 LR+ L +++G + +R LL + L H S S++R Sbjct: 204 LRFRILSEKLGSSIHSRELLLRILVHKSYYLSKMPQSMKENKLRKPLMSWQRSETMDDDN 263 Query: 43 --------------LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL---------- 78 L +GD +L L S L G Sbjct: 264 LMSFSDAHGEARLQLALVGDTVLNLAASLHLIRRNPLLSTGLWESFVFVCRKWTLRKELD 323 Query: 79 -------------VSAETCSQVAREL--------DLASFIRVSSDLRKDVCSFMTSIQAD 117 V ++V L F + + AD Sbjct: 324 SLSCDAGFNNGAKVCNSNLARVWCTLLDLRELVLCDPPFSQSKKPSATTLLELQMKTCAD 383 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 +E+ I LY++ G+E A FV+ L + R + + Sbjct: 384 TLEAYIGGLYVEKGLESALKFVETRLLPLLLLAEPKRNPVALLHERCVLTLQEKPDYKLI 443 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + + V + GL + G+ S++ A + AA + L + Sbjct: 444 GIDNQNTPNELCRIRVYVKGLRMSTGIGKSQKLARRDAAEKALLK 488 >gi|194691820|gb|ACF79994.1| unknown [Zea mays] Length = 266 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223 G H P+FT VE+ + G K+ AEQ AA + Sbjct: 14 YKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDAARVAYEIL 68 Score = 40.7 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 16/35 (45%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F +V G A +K+ AEQ AA V+K Sbjct: 122 FAAIVVFDGNAYHGESAPNKKDAEQNAARVVIKSI 156 >gi|212276238|ref|NP_001130203.1| hypothetical protein LOC100191297 [Zea mays] gi|194688536|gb|ACF78352.1| unknown [Zea mays] Length = 323 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223 G H P+FT VE+ + G K+ AEQ AA + Sbjct: 71 YKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDAARVAYEIL 125 Score = 40.7 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 16/35 (45%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F +V G A +K+ AEQ AA V+K Sbjct: 179 FAAIVVFDGNAYHGESAPNKKDAEQNAARVVIKSI 213 >gi|109097111|ref|XP_001110800.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A-like [Macaca mulatta] Length = 251 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 47 RAAEAAINIWKDNASICFAVPDPLMSDPSKQPKNQLNPVGSLQELAFHHGWRRPEYTLSQ 106 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T V + G SK+ A++ AA + L + Sbjct: 107 EGGPAHKREYTTVCRLE-AFMETGKGASKKQAKRNAAEKFLAK 148 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 4/42 (9%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 H P FT V + + +G K+ + AA IW Sbjct: 19 HVPTFTFRVTVGDIT-CRGEGTGKKLVKHRAAEAA---INIW 56 >gi|50417953|gb|AAH77753.1| Stau2-B-prov protein [Xenopus laevis] Length = 644 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A G +K+ A++ Sbjct: 344 MNPISRLAQIQQAKKEKEPEYVLLSERGIQRRREFIMQVKV-GEEAATGTGPNKKTAKRN 402 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 403 AAEAMLLQLG 412 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 1/76 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + L + P+YK+ GP H FTV + + Q Sbjct: 34 PLHDNMTNPKEKTPMCLVNELARFNRIQPQYKLLDERGPAHSKLFTVQLTLGEQTW-QAE 92 Query: 205 DCSKRAAEQVAAAEVL 220 S + A+ AA+ L Sbjct: 93 STSIKKAQHAAASLAL 108 Score = 36.4 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 19/164 (11%), Positives = 45/164 (27%), Gaps = 6/164 (3%) Query: 44 EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 E G + + + + + + + +++++ Sbjct: 137 ELNGLAMRRGEPAIYRSMDPKPLPNHRANYNYRGMYHQRYLCPMLKTF----YVQLTVGN 192 Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 + T A +L A L + ++ + + + + + E Sbjct: 193 NEFYGEGKTRQAARHSAALKALHALRNEPIPERSSLNGEANRGPEEDKDANKSEISLVFE 252 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + + V SGP H F V + G A+G S Sbjct: 253 ISLKRNLPLSFE-VIKESGPPHMKSFVTRVMV-GEFTAEGEGNS 294 >gi|148225849|ref|NP_001086918.1| staufen, RNA binding protein, homolog 2 [Xenopus laevis] gi|83318414|gb|AAI08851.1| Stau2-b protein [Xenopus laevis] Length = 689 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A G +K+ A++ Sbjct: 389 MNPISRLAQIQQAKKEKEPEYVLLSERGIQRRREFIMQVKV-GEEAATGTGPNKKTAKRN 447 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 448 AAEAMLLQLG 457 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 1/76 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + L + P+YK+ GP H FTV + + Q Sbjct: 79 PLHDNMTNPKEKTPMCLVNELARFNRIQPQYKLLDERGPAHSKLFTVQLTLGEQTW-QAE 137 Query: 205 DCSKRAAEQVAAAEVL 220 S + A+ AA+ L Sbjct: 138 STSIKKAQHAAASLAL 153 Score = 36.4 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 19/164 (11%), Positives = 45/164 (27%), Gaps = 6/164 (3%) Query: 44 EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 E G + + + + + + + +++++ Sbjct: 182 ELNGLAMRRGEPAIYRSMDPKPLPNHRANYNYRGMYHQRYLCPMLKTF----YVQLTVGN 237 Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 + T A +L A L + ++ + + + + + E Sbjct: 238 NEFYGEGKTRQAARHSAALKALHALRNEPIPERSSLNGEANRGPEEDKDANKSEISLVFE 297 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + + V SGP H F V + G A+G S Sbjct: 298 ISLKRNLPLSFE-VIKESGPPHMKSFVTRVMV-GEFTAEGEGNS 339 >gi|224046380|ref|XP_002199282.1| PREDICTED: staufen homolog 2 [Taeniopygia guttata] Length = 680 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G +K+ A++ Sbjct: 378 MNPISRLAQIQQAKKEKEPEYVLLSERGMPRRREFVMQVKVGNDT-TTGTGPNKKIAKRN 436 Query: 215 AAAEVLKREG 224 AA +L + G Sbjct: 437 AAEAMLLQLG 446 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 1/76 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + L + P+YK+ GP H FTV + + + Sbjct: 68 PLQDNMANPKEKTPMCLVNELARFNRIQPQYKLLNERGPAHAKMFTVQLTLGEQTW-EAE 126 Query: 205 DCSKRAAEQVAAAEVL 220 S + A+ AA++ L Sbjct: 127 GSSIKKAQHAAASKAL 142 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP H F V + G A+G SK+ +++ AA VL+ Sbjct: 300 IKESGPPHMKSFVTRVTV-GEFTAEGEGNSKKLSKKRAAMAVLQELK 345 Score = 43.4 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 216 KVFYVQLTVGNSEFF-GEGKTRQAARHNAAMKALQAL 251 >gi|45387553|ref|NP_991124.1| double-stranded RNA-binding protein Staufen homolog 1 [Danio rerio] gi|40807139|gb|AAH65333.1| Staufen, RNA binding protein, homolog 1 (Drosophila) [Danio rerio] Length = 636 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +++V +G H F V V + G +G SK+ A++ AA VL+ Sbjct: 232 NMPVDFEVLKEAGAPHMKSFVVRVVV-GEFAGEGEGKSKKIAKKQAAIAVLEEL 284 Score = 55.7 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V ++G A+GM SK+ A++ Sbjct: 320 MNPISRLAQIQQAKKEKEPEYTLVTERGLPRRREFVMQVSVAGQN-AEGMGPSKKVAKRN 378 Query: 215 AAAEVLKREG 224 AA ++L+ G Sbjct: 379 AAEKMLELLG 388 Score = 48.8 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 1/73 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L + PEYK+ GP H F+V + + S + Sbjct: 1 MANPKEKTPMCLVNELARYNKIQPEYKLLSEEGPAHSKIFSVRLTLGDQHW-DAEGTSIK 59 Query: 210 AAEQVAAAEVLKR 222 A+ AA+ L + Sbjct: 60 KAQHSAASSALAQ 72 >gi|307184289|gb|EFN70747.1| Double-stranded RNA-binding protein Staufen-like protein 2 [Camponotus floridanus] Length = 607 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + L + +Y++T GP H RFTV +++ S + A+ Sbjct: 1 MKEKTPMCLLNELARFNRIQHQYRLTNEQGPAHKKRFTVTLKLGEEEY-VAEGPSIKKAQ 59 Query: 213 QVAAAEVLKR 222 AA E L + Sbjct: 60 HSAATEALTK 69 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SG H F + G SK+ +++ AA +L+ Sbjct: 248 VSESGKPHIRTFMTKCTVGDKV-TVGEGSSKKVSKKRAAELMLEELK 293 >gi|307353641|ref|YP_003894692.1| ribonuclease III [Methanoplanus petrolearius DSM 11571] gi|307156874|gb|ADN36254.1| ribonuclease III [Methanoplanus petrolearius DSM 11571] Length = 173 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 5/128 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNH 62 LE+ IGY F N LL +ALT + S + L LGD ++ +++ Sbjct: 32 DELEEIIGYRFKNHELLTRALTRLAYSLENDLPEGFHMDALATLGDAVIDVIVL-ESLMK 90 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 +GELSV + +V+ + A ++L ++ + A++ E+L Sbjct: 91 SGLYSKGELSVAKSDIVNMTRLRKAAESIELFRYVHWGKGEEASHIWTSGRVMAELCEAL 150 Query: 123 IAALYLDG 130 A+YLDG Sbjct: 151 AGAVYLDG 158 >gi|195469794|ref|XP_002099821.1| GE16707 [Drosophila yakuba] gi|194187345|gb|EDX00929.1| GE16707 [Drosophila yakuba] Length = 632 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 3/95 (3%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Y + + KY + + K + + G YK+ ++GP H Sbjct: 25 YNRKSPQKRRYEMPKYAAPKKKICKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 82 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P FT+ VE+ G G SK+ A AAA L+ Sbjct: 83 PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116 >gi|114626614|ref|XP_001139686.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] Length = 686 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 1/126 (0%) Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 +K S + S + S+ L E K+ K + Sbjct: 336 PFQKYSWSVIESWRQLPPCSVFVLSPLKRPFEDGLGDDKDPNKKMKRNLRKSVKAIDLMN 395 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 396 ALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQ 454 Query: 222 REGIWT 227 G T Sbjct: 455 AMGYPT 460 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 572 >gi|114626612|ref|XP_001139859.1| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes] Length = 677 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 1/126 (0%) Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 +K S + S + S+ L E K+ K + Sbjct: 336 PFQKYSWSVIESWRQLPPCSVFVLSPLKRPFEDGLGDDKDPNKKMKRNLRKSVKAIDLMN 395 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 396 ALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQ 454 Query: 222 REGIWT 227 G T Sbjct: 455 AMGYPT 460 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 535 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 563 >gi|114626616|ref|XP_001139781.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes] Length = 676 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 1/126 (0%) Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 +K S + S + S+ L E K+ K + Sbjct: 336 PFQKYSWSVIESWRQLPPCSVFVLSPLKRPFEDGLGDDKDPNKKMKRNLRKSVKAIDLMN 395 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 396 ALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQ 454 Query: 222 REGIWT 227 G T Sbjct: 455 AMGYPT 460 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 534 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 562 >gi|281352310|gb|EFB27894.1| hypothetical protein PANDA_007403 [Ailuropoda melanoleuca] Length = 296 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 73 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 132 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G SK+ A++ AA + L + Sbjct: 133 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 174 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 45 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 83 >gi|114581966|ref|XP_001156031.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] Length = 270 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 47 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 106 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G SK+ A++ AA + L + Sbjct: 107 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 148 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 19 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 57 >gi|213417919|ref|NP_001132990.1| interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 3 [Homo sapiens] gi|332209456|ref|XP_003253828.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 2 [Nomascus leucogenys] gi|37955186|gb|AAP20061.1| HSD14 [Homo sapiens] gi|119631439|gb|EAX11034.1| protein kinase, interferon-inducible double stranded RNA dependent activator, isoform CRA_a [Homo sapiens] Length = 288 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 65 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 124 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G SK+ A++ AA + L + Sbjct: 125 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 166 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 37 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 75 >gi|157116156|ref|XP_001658385.1| staufen [Aedes aegypti] gi|108876611|gb|EAT40836.1| staufen [Aedes aegypti] Length = 1103 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L + +Y++T SGP H RFTV +++ S + A+ AA Sbjct: 344 PMCLVNELARYNKIQHQYRLTCESGPAHKKRFTVTLKLGDEEY-TAEGPSIKKAQHSAAH 402 Query: 218 EVL 220 E + Sbjct: 403 EAI 405 Score = 51.5 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + + L + A+ P Y + G F + V SG + A G+ +K+ A++ Sbjct: 726 MVNPISRLMQIQQARKEKEPVYTLVEERGVARRREFIMEVSASGKS-ATGIGPTKKLAKK 784 Query: 214 VAAAEVLKREG 224 AA +L G Sbjct: 785 EAAENLLVMLG 795 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 1/93 (1%) Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + A D + + L K +T +++V GP H FT Sbjct: 591 TPDTANPVSDSHNTSIDSDDPNSDLKSPISLVHEMALKRKLTVQFEVHGEKGPPHMKVFT 650 Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + ++ G +G K+ +++ AA ++L Sbjct: 651 TLCKV-GSIVTEGEGNGKKLSKKRAAEKMLDEL 682 >gi|28502787|gb|AAH47175.1| Ilf3 protein [Danio rerio] Length = 612 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 +YK+ ++GP H P FT+ VE+ G + SKR A+ A +VL+ G+ T Sbjct: 421 QYKLISQTGPVHVPVFTMSVEVDGKNF-EASGPSKRTAKLHVAVKVLQDMGLPT 473 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VEI G QG + Sbjct: 547 ISETGGSHDKRFVMEVEIDGQKF-QGTGSN 575 >gi|47086831|ref|NP_997764.1| interleukin enhancer-binding factor 3 homolog [Danio rerio] gi|45501209|gb|AAH67172.1| Interleukin enhancer binding factor 3 [Danio rerio] Length = 833 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 +YK+ ++GP H P FT+ VE+ G + SKR A+ A +VL+ G+ T Sbjct: 421 QYKLISQTGPVHVPVFTMSVEVDGKNF-EASGPSKRTAKLHVAVKVLQDMGLPT 473 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VEI G QG + Sbjct: 547 ISETGGSHDKRFVMEVEIDGQKF-QGTGSN 575 >gi|62510785|sp|Q6NXA4|ILF3_DANRE RecName: Full=Interleukin enhancer-binding factor 3 homolog Length = 833 Score = 56.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 +YK+ ++GP H P FT+ VE+ G + SKR A+ A +VL+ G+ T Sbjct: 421 QYKLISQTGPVHVPVFTMSVEVDGKNF-EASGPSKRTAKLHVAVKVLQDMGLPT 473 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VEI G QG + Sbjct: 547 ISETGGSHDKRFVMEVEIDGQKF-QGTGSN 575 >gi|222631053|gb|EEE63185.1| hypothetical protein OsJ_17994 [Oryza sativa Japonica Group] Length = 787 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220 T + GP H+P F V I+ + +++AAEQ AA L Sbjct: 54 YHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVAL 99 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 14/32 (43%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F VEI G+ +K+ AE AA L Sbjct: 501 FLCTVEIGGIQYIGAAARTKKDAEIKAARTAL 532 >gi|125551761|gb|EAY97470.1| hypothetical protein OsI_19399 [Oryza sativa Indica Group] Length = 787 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220 T + GP H+P F V I+ + +++AAEQ AA L Sbjct: 54 YHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVAL 99 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 14/32 (43%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F VEI G+ +K+ AE AA L Sbjct: 501 FICTVEIGGIQYIGAAARTKKDAEIKAARTAL 532 >gi|115463113|ref|NP_001055156.1| Os05g0307400 [Oryza sativa Japonica Group] gi|122169278|sp|Q0DJA3|DRB3_ORYSJ RecName: Full=Double-stranded RNA-binding protein 3; AltName: Full=dsRNA-binding protein 3 gi|113578707|dbj|BAF17070.1| Os05g0307400 [Oryza sativa Japonica Group] gi|215704133|dbj|BAG92973.1| unnamed protein product [Oryza sativa Japonica Group] Length = 437 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220 T + GP H+P F V I+ + +++AAEQ AA L Sbjct: 54 YHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVAL 99 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 14/32 (43%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F VEI G+ +K+ AE AA L Sbjct: 151 FLCTVEIGGIQYIGAAARTKKDAEIKAARTAL 182 >gi|156371296|ref|XP_001628700.1| predicted protein [Nematostella vectensis] gi|156215684|gb|EDO36637.1| predicted protein [Nematostella vectensis] Length = 423 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + L + PEY V +GP H F V +++ + +GM + + A+ Sbjct: 1 MSQKTPISLMNELAKANNLNPEYNVIEETGPAHKKTFKVQLKLGDIGIWEGMANNIKLAK 60 Query: 213 QVAAAEVLKREGI 225 AA + L+ G+ Sbjct: 61 HKAAEKGLENCGL 73 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 ++ + L + + P Y + G FT+ V++ G A G+ +K+ A++ A Sbjct: 341 NSISILGQILQRRHDPAPVYSLVEERGHMMKKEFTLRVKV-GSHEALGVGPNKKTAKKNA 399 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 400 AEAMLQLMG 408 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + + +++ +GP H +F + + G +G K+ A++ AA +L Sbjct: 244 YEIATRMKMMVDFQDMENAGPAHMKKFKIKATV-GPYMTEGEGNRKKDAKKEAAVRMLAE 302 Query: 223 EG 224 Sbjct: 303 LK 304 >gi|296204404|ref|XP_002749315.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A-like [Callithrix jacchus] Length = 302 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 79 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 138 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G SK+ A++ AA + L + Sbjct: 139 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 180 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 51 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 89 >gi|71834292|ref|NP_001025236.1| interleukin enhancer binding factor 3a [Danio rerio] gi|66911683|gb|AAH96956.1| Zgc:113842 [Danio rerio] Length = 820 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 ++GP+H+P+F++ VE+ G+ + SKR+A+ A +VL G+ Sbjct: 479 SQTGPEHEPQFSMTVEVDGVTY-EATGPSKRSAKLHVAQKVLVALGV 524 >gi|170027969|ref|XP_001841869.1| staufen [Culex quinquefasciatus] gi|167868339|gb|EDS31722.1| staufen [Culex quinquefasciatus] Length = 939 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L +Y++T SGP H RFTV +++ S + A+ AA Sbjct: 267 PMCLVNELARYNKCQHQYRLTGESGPAHKKRFTVTLKLGDEEY-TAEGPSIKKAQHSAAN 325 Query: 218 EVL 220 E + Sbjct: 326 EAI 328 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + + L + A+ PEY + G F + V SG A G+ +K+ A++ Sbjct: 645 MVNPISRLMQIQQARKEKEPEYTLVEERGMARRREFIMEVLASGKT-ASGVGPTKKIAKK 703 Query: 214 VAAAEVLKREG 224 AA +L G Sbjct: 704 EAAESLLVMLG 714 Score = 50.7 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 1/84 (1%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 + + + L K + +++V GP H FT + ++ G Sbjct: 519 NCHDTSIDSDDPNSELKSPISLVHELALKRKMAVQFEVHSEKGPPHMKVFTTICKV-GTI 577 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 +G K+ +++ AA ++L Sbjct: 578 VTEGEGNGKKISKKRAAEKMLDEL 601 >gi|242089535|ref|XP_002440600.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor] gi|241945885|gb|EES19030.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor] Length = 573 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 T RSGP H P FT VE++G +K+ A++ AA LK+ Sbjct: 106 YTTIRSGPGHTPVFTCTVELAGKTFTGNPGKTKKQAQKNAAMAAWSDLKQL 156 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPAFCSTLRQAEHAAAEVALNEL 68 >gi|156394093|ref|XP_001636661.1| predicted protein [Nematostella vectensis] gi|156223766|gb|EDO44598.1| predicted protein [Nematostella vectensis] Length = 414 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 2/83 (2%) Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + + L E+A + V PEY T G + F V ISG+ Sbjct: 200 NNKQPKEWVINPGGKTPVAILHEYAQRELKVKPEYSHT--EGNNAATPFVAEVRISGMVY 257 Query: 201 AQGMDCSKRAAEQVAAAEVLKRE 223 +G SKR A+Q AA L+ Sbjct: 258 GKGEGASKRLAKQHAAETALEVL 280 Score = 39.1 bits (89), Expect = 0.46, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 LQE GV + T + +G A G +K+ Q+A Sbjct: 322 SPYHILQECLKRYQGVYQSTIDFKMKPEPDQRQHTYEITCAGHT-ATGFCKNKKIGRQLA 380 Query: 216 AAEVLKRE 223 A +LK+ Sbjct: 381 AQAILKKL 388 >gi|213417911|ref|NP_001132989.1| interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 2 [Homo sapiens] gi|21739361|emb|CAD38725.1| hypothetical protein [Homo sapiens] gi|119631440|gb|EAX11035.1| protein kinase, interferon-inducible double stranded RNA dependent activator, isoform CRA_b [Homo sapiens] Length = 302 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 79 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 138 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G SK+ A++ AA + L + Sbjct: 139 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 180 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 22/90 (24%), Gaps = 4/90 (4%) Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD---HDPRFTVVVE 194 + + H T V D H P FT V Sbjct: 1 MQSTPFCGFCSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVT 60 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + + G SK+ A+ AA + Sbjct: 61 VGDIT-CTGEGTSKKLAKHRAAEAAINILK 89 >gi|114052769|ref|NP_001039335.1| interferon-inducible double stranded RNA-dependent protein kinase activator A [Bos taurus] gi|122135712|sp|Q2HJ92|PRKRA_BOVIN RecName: Full=Interferon-inducible double stranded RNA-dependent protein kinase activator A; AltName: Full=Protein activator of the interferon-induced protein kinase; AltName: Full=Protein kinase, interferon-inducible double stranded RNA-dependent activator gi|87578189|gb|AAI13247.1| Protein kinase, interferon-inducible double stranded RNA dependent activator [Bos taurus] gi|296490704|gb|DAA32817.1| interferon-inducible double stranded RNA-dependent protein kinase activator A [Bos taurus] Length = 313 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 90 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G SK+ A++ AA + L + Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 62 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100 >gi|123974683|ref|XP_001313928.1| RNase3 domain containing protein [Trichomonas vaginalis G3] gi|121895887|gb|EAY01056.1| RNase3 domain containing protein [Trichomonas vaginalis G3] Length = 810 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 69/188 (36%), Gaps = 6/188 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++ Y F N ++ + L S S + +YERLE+LGD +L LL +FN Sbjct: 374 IRKFTEKFNYTFKNWHIVWQFLIDPSYYFRSSQFIHNYERLEYLGDTVLDLLFGISVFNG 433 Query: 63 FDSA-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG +S + V T S+++ LDL S + S+ D+ ++ + + Sbjct: 434 CYNYANEGLMSELKIAFVKNRTFSKISEILDLKSLLCTSTPTNYDLGKKGSADLFEALFG 493 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 I + + +++ + + + + K Sbjct: 494 AILLDSNISKCIEIFKKIIEEYQEEFLETVRITHADKVIKYITKTSVDDYMNLVMPKKVS 553 Query: 180 RSGPDHDP 187 R DH+ Sbjct: 554 RDHVDHEK 561 Score = 44.1 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%) Query: 2 SALRYSTLEKRI--GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + + L K + +N + ALTHSS+ +YER+EF+GD I+ + Sbjct: 555 DHVDHEKLSKILELDINPSNVTQFTVALTHSSVGK---YNYERIEFIGDLIVKYSLIVSQ 611 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELD 92 F +A E +S+ + L S + + A ++ Sbjct: 612 MEAFPNATESGMSIASSFLKSNDFLGKRAYKIG 644 >gi|119182644|ref|XP_001242444.1| hypothetical protein CIMG_06340 [Coccidioides immitis RS] Length = 390 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 75/208 (36%), Gaps = 23/208 (11%) Query: 17 FANRSLLEKALTH--------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +++L TH S H SY+RLE LGD L ++ + L+++ F + Sbjct: 141 IKDKTLETAVFTHQGEVHAQAPSAVH---SSYDRLEILGDAYLEVIATRLIWDRFQTLPA 197 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G +S LV ET +Q + +++++D+R ++ D+ E+ +AA+ L Sbjct: 198 GRMSQIRELLVKNETLAQFSERYGFDRRVKIATDIRSQ-AKRWMKVKGDIFEAYVAAVIL 256 Query: 129 DGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + + + A + A G + + S P + Sbjct: 257 SDPVNGFNLVEEWLAHLWIPTLNHVQPENQAAHYKETLAKKVMGKGIKLRYINESPPVNR 316 Query: 187 P----RFTVVVEISG-----LAPAQGMD 205 F + V ++G G Sbjct: 317 KGGMQTFFIGVYLTGWGWQDQHLGSGSG 344 >gi|17231599|ref|NP_488147.1| ribonuclease III [Nostoc sp. PCC 7120] gi|17133242|dbj|BAB75806.1| ribonuclease III [Nostoc sp. PCC 7120] Length = 202 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 3/174 (1%) Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 +YE+LEF+GD ++ L + +L+ + G+ + + LVS +Q+ARE L + Sbjct: 6 NYEQLEFVGDAVVRLAAAVMLWETYPDCPVGDFAAIRSVLVSDRILAQLAREYGLELHLL 65 Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRD 156 V+ D + + L A +E+ ++D +++Q ++ R + Sbjct: 66 VAGSATSDKIGQESRLADAFEAVLGALYLSTSNLELIRPWLDHHFRQLAAEIRLDPARLN 125 Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209 K LQEW A+F V PEY+V + + RF V + G +G S + Sbjct: 126 YKAALQEWTQAQFKVLPEYRVVEINQANRTQERFAAEVWLHGNKLGEGKGRSIK 179 >gi|149639809|ref|XP_001507143.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 719 Score = 55.7 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L+ F P +VT +GP H F V + G +G SK+ +++ AA VL Sbjct: 288 LKRNMPVNFEFFPLKQVTKENGPPHMKSFLTKVSV-GEFTGEGEGKSKKISKKNAAIAVL 346 Query: 221 KREG 224 + Sbjct: 347 EELK 350 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V+I G+ +G +K+ A++ Sbjct: 385 MNPISRLAQIQQAKKEREPEYLLVTERGLPRRREFVMQVKI-GVHTTEGAGTNKKVAKRN 443 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 444 AAENMLELLG 453 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 1/73 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + L + PEYK+ GP H FTV + + Q S Sbjct: 72 NMANPKEKTPMCLVNELARFNKIQPEYKLLSEQGPAHSKVFTVQLTLGDQRW-QSEGTSI 130 Query: 209 RAAEQVAAAEVLK 221 + A+ AA + L+ Sbjct: 131 KKAQHGAATKALQ 143 >gi|320040901|gb|EFW22834.1| RNase3 domain-containing protein [Coccidioides posadasii str. Silveira] Length = 390 Score = 55.7 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 75/208 (36%), Gaps = 23/208 (11%) Query: 17 FANRSLLEKALTH--------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +++L TH S H SY+RLE LGD L ++ + L+++ F + Sbjct: 141 IKDKTLETAVFTHQGEVHAQAPSAVH---SSYDRLEILGDAYLEVIATRLIWDRFQTLPA 197 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G +S LV ET +Q + ++++SD+R ++ D+ E+ +AA+ L Sbjct: 198 GRMSQIRELLVKNETLAQFSERYGFDRRVKIASDIRSQ-AKRWMKVKGDIFEAYVAAVIL 256 Query: 129 DGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + + + A + A G + + S P + Sbjct: 257 SDPVNGFNLVEEWLAYLWIPTLNHVQPENQAAHYKETLAKKVMGKGIKLRYINESPPINR 316 Query: 187 P----RFTVVVEISG-----LAPAQGMD 205 F + V ++G G Sbjct: 317 KGGMQTFFIGVYLTGWGWQDQHLGSGSG 344 >gi|303319323|ref|XP_003069661.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240109347|gb|EER27516.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 390 Score = 55.7 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 75/208 (36%), Gaps = 23/208 (11%) Query: 17 FANRSLLEKALTH--------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +++L TH S H SY+RLE LGD L ++ + L+++ F + Sbjct: 141 IKDKTLETAVFTHQGEVHAQAPSAVH---SSYDRLEILGDAYLEVIATRLIWDRFQTLPA 197 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G +S LV ET +Q + ++++SD+R ++ D+ E+ +AA+ L Sbjct: 198 GRMSQIRELLVKNETLAQFSERYGFDRRVKIASDIRSQ-AKRWMKVKGDIFEAYVAAVIL 256 Query: 129 DGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + + + A + A G + + S P + Sbjct: 257 SDPVNGFNLVEEWLAYLWIPTLNHVQPENQAAHYKETLAKKVMGKGIKLRYINESPPINR 316 Query: 187 P----RFTVVVEISG-----LAPAQGMD 205 F + V ++G G Sbjct: 317 KGGMQTFFIGVYLTGWGWQDQHLGSGSG 344 >gi|116785242|gb|ABK23649.1| unknown [Picea sitchensis] Length = 188 Score = 55.7 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 3/117 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L+ +I Y F ++SLL K +TH+S S ++ L LG I+ IS + + Sbjct: 40 IEELQTKIKYQFKDKSLLAKTMTHASFS---LDNNAVLNILGSEIIEAAISFHYLSKNST 96 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 +G+L+ + + + S+ A +L L IRV+ + + + ++ Sbjct: 97 ISKGDLTSQKAKISNCSALSKDAFDLQLNELIRVAPKVDPKAQIIVCGCYRALFGAI 153 >gi|114654623|ref|XP_510148.2| PREDICTED: dicer1 isoform 7 [Pan troglodytes] Length = 1715 Score = 55.7 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE---RLEF 45 + EK+I Y F N++ L +A TH+S ++ E RL F Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITGKEPTTRLHF 1708 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%) Query: 13 IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 IGY+ N L+ +ALT S+ S + + ERLE LGD L I+T LF + A E Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 G LS + VS ++ ++ L + Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1393 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 E D L D + E W K E +H Sbjct: 1394 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1451 Query: 189 FTVVVEISGLAPAQG 203 I + G Sbjct: 1452 -----FIDNMLMGSG 1461 >gi|307191761|gb|EFN75203.1| Interferon-inducible double stranded RNA-dependent protein kinase activator A [Harpegnathos saltator] Length = 336 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/146 (10%), Positives = 33/146 (22%), Gaps = 12/146 (8%) Query: 90 ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 ++ ++ + + R Sbjct: 32 HINTFTYKVTCDGFTATGTGRCKKDAKHEAANAMLTTIATHRNYPQLPASPATSPVRTPM 91 Query: 150 SGKFRRDAKTELQEW-----------AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + PEY GP H FT+ +S Sbjct: 92 PDSLPMSPRMPANIPFVNTIGALQDLCAENNLQEPEYVPVSDVGPPHARVFTIRCVVSNF 151 Query: 199 APAQGMDCSKRAAEQVAAAEVLKREG 224 + G+ +K+ A+ AA +++ + Sbjct: 152 SE-DGVGTTKKQAKHDAAKKMVDKIN 176 >gi|148695266|gb|EDL27213.1| protein kinase, interferon inducible double stranded RNA dependent activator, isoform CRA_b [Mus musculus] Length = 210 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 1/89 (1%) Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + V K K + + LQE A PEY ++ GP H +T + Sbjct: 1 MFSFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTIC 60 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + G SK+ A++ AA + L + Sbjct: 61 RLE-SFMETGKGASKKQAKRNAAEKFLAK 88 >gi|281414105|ref|ZP_06245847.1| RNAse III [Micrococcus luteus NCTC 2665] Length = 130 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLK 221 GP HDPR+ + + + SK+ AE+ AAA L+ Sbjct: 73 RYAIEGQGPAHDPRYRATLVVGEREYGSAVASSKKQAERDAAAASWPALE 122 >gi|297806101|ref|XP_002870934.1| hypothetical protein ARALYDRAFT_486948 [Arabidopsis lyrata subsp. lyrata] gi|297316771|gb|EFH47193.1| hypothetical protein ARALYDRAFT_486948 [Arabidopsis lyrata subsp. lyrata] Length = 770 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 18/36 (50%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F+V V +G GM +K+ A Q AA L+ Sbjct: 685 QFSVEVLFTGEKIGIGMGKTKKDAHQQAAENALRSL 720 >gi|126307762|ref|XP_001373191.1| PREDICTED: similar to adenosine deaminase, RNA-specific [Monodelphis domestica] Length = 1131 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + K G T E+ + + GP HDP+F V++ M SK+AA+Q+AA + Sbjct: 551 VLMEHVQKNGSTCEFLLISQEGPAHDPKFKYCVKMGSQTFPTMMANSKKAAKQMAAEVAV 610 Query: 221 KRE 223 K Sbjct: 611 KAL 613 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 25/55 (45%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T E+ + +SGP H+PRF ISG SK+ A Q AAA+ Sbjct: 443 YAQFTCQTCEFTLLEQSGPSHEPRFKYQAVISGRRFPPAEAGSKKLARQDAAAKA 497 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 675 VDQSGPPHEPKFIYQAKVGGRWFPAVSAHSKKQGKQEAADAALRVL 720 >gi|148234413|ref|NP_001079500.1| protein kinase, interferon-inducible double stranded RNA dependent activator [Xenopus laevis] gi|82176774|sp|Q7ZYA5|PRKAA_XENLA RecName: Full=Interferon-inducible double stranded RNA-dependent protein kinase activator A homolog A gi|27696370|gb|AAH43873.1| Rbpa protein [Xenopus laevis] Length = 309 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + LQE A K PEY V SGP H FT+ + G Sbjct: 112 DPKKPPNQMQENPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVE-TFVETGS 170 Query: 205 DCSKRAAEQVAAAEVLKREG 224 SK+ A++VAA ++L + Sbjct: 171 GTSKQVAKRVAAEKLLTKFK 190 Score = 51.5 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 +L K G P Y + G H+P FT + I + + G SK+ A+Q AA Sbjct: 32 PIQLLHEFGTKTGNHPVYTLEKAEGQAHNPSFTFRLVIGDIT-SLGEGPSKKTAKQKAAE 90 Query: 218 EVL 220 L Sbjct: 91 FAL 93 >gi|3334381|sp|Q91836|PRKAB_XENLA RecName: Full=Interferon-inducible double stranded RNA-dependent protein kinase activator A homolog B; AltName: Full=Double-stranded RNA-binding protein A; AltName: Full=XlRBPA gi|214739|gb|AAA49947.1| RNA binding protein [Xenopus laevis] Length = 298 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + LQE A K PEY V SGP H FT+ + G Sbjct: 101 DPKKPPNQMQENPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVE-TFVETGS 159 Query: 205 DCSKRAAEQVAAAEVLKREG 224 SK+ A++VAA ++L + Sbjct: 160 GTSKQVAKRVAAEKLLTKFK 179 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 +L K G P Y + G H+P FT + I + + G SK+ +Q AA Sbjct: 21 PIQLLHEFGTKTGNHPVYTLEKAEGQAHNPSFTFRLVIGDIT-SLGEGPSKKTPKQKAAE 79 Query: 218 EVL 220 L Sbjct: 80 FAL 82 >gi|332229969|ref|XP_003264158.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 3 [Nomascus leucogenys] Length = 490 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 211 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 269 Query: 224 GIWT 227 G T Sbjct: 270 GYPT 273 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 348 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 376 >gi|332229967|ref|XP_003264157.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 2 [Nomascus leucogenys] Length = 658 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 379 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 437 Query: 224 GIWT 227 G T Sbjct: 438 GYPT 441 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 516 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 544 >gi|332229965|ref|XP_003264156.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 1 [Nomascus leucogenys] Length = 672 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|327288450|ref|XP_003228939.1| PREDICTED: spermatid perinuclear RNA-binding protein-like [Anolis carolinensis] Length = 694 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 412 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 470 Query: 224 GIWT 227 G T Sbjct: 471 GYPT 474 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 549 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 577 >gi|326930520|ref|XP_003211394.1| PREDICTED: spermatid perinuclear RNA-binding protein-like [Meleagris gallopavo] Length = 672 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 392 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 450 Query: 224 GIWT 227 G T Sbjct: 451 GYPT 454 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 529 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 557 >gi|301769247|ref|XP_002920042.1| PREDICTED: spermatid perinuclear RNA-binding protein-like [Ailuropoda melanoleuca] Length = 672 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|297270177|ref|XP_001084509.2| PREDICTED: spermatid perinuclear RNA-binding protein isoform 4 [Macaca mulatta] Length = 658 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 379 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 437 Query: 224 GIWT 227 G T Sbjct: 438 GYPT 441 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 516 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 544 >gi|291408373|ref|XP_002720487.1| PREDICTED: spermatid perinuclear RNA binding protein [Oryctolagus cuniculus] Length = 696 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 417 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 475 Query: 224 GIWT 227 G T Sbjct: 476 GYPT 479 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 554 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 582 >gi|281350170|gb|EFB25754.1| hypothetical protein PANDA_008719 [Ailuropoda melanoleuca] Length = 672 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|224073921|ref|XP_002190904.1| PREDICTED: spermatid perinuclear RNA binding protein [Taeniopygia guttata] Length = 673 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 392 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 450 Query: 224 GIWT 227 G T Sbjct: 451 GYPT 454 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|194225808|ref|XP_001500803.2| PREDICTED: spermatid perinuclear RNA binding protein [Equus caballus] Length = 672 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|159164237|pdb|2DMY|A Chain A, Solution Structure Of Dsrm Domain In Spermatid Perinuclear Rna-Bind Protein Length = 97 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 23 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 81 Query: 224 GIWT 227 G T Sbjct: 82 GYPT 85 >gi|149047906|gb|EDM00522.1| spermatid perinuclear RNA binding protein, isoform CRA_b [Rattus norvegicus] Length = 648 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|132626573|ref|NP_445868.2| spermatid perinuclear RNA-binding protein [Rattus norvegicus] gi|149047905|gb|EDM00521.1| spermatid perinuclear RNA binding protein, isoform CRA_a [Rattus norvegicus] Length = 672 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|126294271|ref|XP_001371295.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 704 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 425 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 483 Query: 224 GIWT 227 G T Sbjct: 484 GYPT 487 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 562 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 590 >gi|119607972|gb|EAW87566.1| spermatid perinuclear RNA binding protein, isoform CRA_d [Homo sapiens] Length = 648 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|119607969|gb|EAW87563.1| spermatid perinuclear RNA binding protein, isoform CRA_a [Homo sapiens] Length = 490 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 211 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 269 Query: 224 GIWT 227 G T Sbjct: 270 GYPT 273 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 348 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 376 >gi|114626618|ref|XP_001139454.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] Length = 615 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|114626620|ref|XP_520244.2| PREDICTED: hypothetical protein isoform 7 [Pan troglodytes] Length = 592 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|297270175|ref|XP_001084032.2| PREDICTED: spermatid perinuclear RNA-binding protein isoform 1 [Macaca mulatta] Length = 672 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|71897299|ref|NP_001025851.1| spermatid perinuclear RNA-binding protein [Gallus gallus] gi|75571231|sp|Q5ZIL4|STRBP_CHICK RecName: Full=Spermatid perinuclear RNA-binding protein gi|53135487|emb|CAG32429.1| hypothetical protein RCJMB04_25e3 [Gallus gallus] Length = 672 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 392 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 450 Query: 224 GIWT 227 G T Sbjct: 451 GYPT 454 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 529 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 557 >gi|38114853|gb|AAH02693.2| STRBP protein [Homo sapiens] Length = 615 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 336 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 394 Query: 224 GIWT 227 G T Sbjct: 395 GYPT 398 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 473 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 501 >gi|114842377|ref|NP_033287.2| spermatid perinuclear RNA-binding protein [Mus musculus] gi|81879604|sp|Q91WM1|STRBP_MOUSE RecName: Full=Spermatid perinuclear RNA-binding protein gi|15928464|gb|AAH14710.1| Spermatid perinuclear RNA binding protein [Mus musculus] gi|123229640|emb|CAM21472.1| spermatid perinuclear RNA binding protein [Mus musculus] gi|148676766|gb|EDL08713.1| spermatid perinuclear RNA binding protein, isoform CRA_a [Mus musculus] Length = 672 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|13377630|gb|AAK20832.1|AF333337_1 spermatid perinuclear RNA-binding protein [Homo sapiens] Length = 673 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 394 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 452 Query: 224 GIWT 227 G T Sbjct: 453 GYPT 456 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 531 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 559 >gi|81872622|sp|Q9JKU6|STRBP_RAT RecName: Full=Spermatid perinuclear RNA-binding protein; AltName: Full=74 kDa double-stranded RNA-binding protein; Short=p74 gi|7329162|gb|AAF59924.1|AF226864_1 double-stranded RNA-binding protein p74 [Rattus norvegicus] Length = 671 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 47.2 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G HD RF + VE+ G +G +K+ A++V L++ Sbjct: 531 ISETGGSHDKRFVMEVEVDGQKF-RGAGPNKKVAKEV--QRTLEKL 573 >gi|80478568|gb|AAI08732.1| STRBP protein [Homo sapiens] Length = 589 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|115496278|ref|NP_001069207.1| spermatid perinuclear RNA-binding protein [Bos taurus] gi|122132446|sp|Q08E27|STRBP_BOVIN RecName: Full=Spermatid perinuclear RNA-binding protein gi|115305044|gb|AAI23454.1| Spermatid perinuclear RNA binding protein [Bos taurus] gi|296482172|gb|DAA24287.1| spermatid perinuclear RNA-binding protein [Bos taurus] Length = 672 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|73968135|ref|XP_863842.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 8 [Canis familiaris] Length = 640 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 361 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 419 Query: 224 GIWT 227 G T Sbjct: 420 GYPT 423 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 498 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 526 >gi|73968127|ref|XP_863753.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 4 [Canis familiaris] Length = 678 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 398 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 456 Query: 224 GIWT 227 G T Sbjct: 457 GYPT 460 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 536 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 564 >gi|73968122|ref|XP_863686.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 2 [Canis familiaris] Length = 648 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|73968137|ref|XP_863863.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 9 [Canis familiaris] Length = 490 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 211 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 269 Query: 224 GIWT 227 G T Sbjct: 270 GYPT 273 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 348 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 376 >gi|73968139|ref|XP_863888.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 10 [Canis familiaris] Length = 676 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 397 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 455 Query: 224 GIWT 227 G T Sbjct: 456 GYPT 459 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 534 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 562 >gi|73968125|ref|XP_863730.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 3 [Canis familiaris] Length = 678 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 404 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 462 Query: 224 GIWT 227 G T Sbjct: 463 GYPT 466 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 536 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 564 >gi|73968129|ref|XP_863778.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 5 [Canis familiaris] Length = 615 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|57092117|ref|XP_537853.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 1 [Canis familiaris] Length = 672 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|197099302|ref|NP_001126458.1| spermatid perinuclear RNA-binding protein [Pongo abelii] gi|75054828|sp|Q5R6Y5|STRBP_PONAB RecName: Full=Spermatid perinuclear RNA-binding protein gi|55731530|emb|CAH92475.1| hypothetical protein [Pongo abelii] Length = 672 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|673454|emb|CAA59167.1| spermatid perinuclear RNA binding protein [Mus musculus] gi|148676767|gb|EDL08714.1| spermatid perinuclear RNA binding protein, isoform CRA_b [Mus musculus] Length = 648 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|283806705|ref|NP_001164608.1| spermatid perinuclear RNA-binding protein isoform 2 [Homo sapiens] gi|114626610|ref|XP_001139946.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 5 [Pan troglodytes] gi|296190783|ref|XP_002743339.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 2 [Callithrix jacchus] gi|12053237|emb|CAB66800.1| hypothetical protein [Homo sapiens] gi|55664365|emb|CAH70299.1| spermatid perinuclear RNA binding protein [Homo sapiens] gi|119607971|gb|EAW87565.1| spermatid perinuclear RNA binding protein, isoform CRA_c [Homo sapiens] Length = 658 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 379 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 437 Query: 224 GIWT 227 G T Sbjct: 438 GYPT 441 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 516 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 544 >gi|7023885|dbj|BAA92120.1| spermatid perinuclear RNA-binding protein. [Homo sapiens] Length = 490 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 211 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 269 Query: 224 GIWT 227 G T Sbjct: 270 GYPT 273 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 348 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 376 >gi|21361745|ref|NP_060857.2| spermatid perinuclear RNA-binding protein isoform 1 [Homo sapiens] gi|114626608|ref|XP_001140028.1| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes] gi|296190781|ref|XP_002743338.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 1 [Callithrix jacchus] gi|332832824|ref|XP_003312319.1| PREDICTED: spermatid perinuclear RNA-binding protein [Pan troglodytes] gi|74752134|sp|Q96SI9|STRBP_HUMAN RecName: Full=Spermatid perinuclear RNA-binding protein gi|14042893|dbj|BAB55434.1| unnamed protein product [Homo sapiens] gi|17389385|gb|AAH17732.1| Spermatid perinuclear RNA binding protein [Homo sapiens] gi|55664366|emb|CAH70300.1| spermatid perinuclear RNA binding protein [Homo sapiens] gi|117644880|emb|CAL37906.1| hypothetical protein [synthetic construct] gi|119607970|gb|EAW87564.1| spermatid perinuclear RNA binding protein, isoform CRA_b [Homo sapiens] gi|168278000|dbj|BAG10978.1| spermatid perinuclear RNA-binding protein [synthetic construct] Length = 672 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451 Query: 224 GIWT 227 G T Sbjct: 452 GYPT 455 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558 >gi|10436629|dbj|BAB14873.1| unnamed protein product [Homo sapiens] Length = 405 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 126 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 184 Query: 224 GIWT 227 G T Sbjct: 185 GYPT 188 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 263 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 291 >gi|242013589|ref|XP_002427485.1| mitochondrial 50S ribosomal protein L44, putative [Pediculus humanus corporis] gi|212511880|gb|EEB14747.1| mitochondrial 50S ribosomal protein L44, putative [Pediculus humanus corporis] Length = 361 Score = 55.3 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 75/228 (32%), Gaps = 19/228 (8%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ---------------ESYERLEFLGDRILGLLI 55 KR+ F LL +A TH S + +S E L G++I+ + Sbjct: 86 KRLKENFT-PELLVRAFTHRSYVSEQETKLQEVGVSNVDISMKSNEELVSKGEKIISDFV 144 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + + + + L+S + V++ L I + ++ Sbjct: 145 PKFVSYFYPRFPMEGIQSIHDYLLSNDVLGHVSKNLGTTDLILSAEY--PVETETYSTTL 202 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 ++ +L L+ F+ + + + +D + E + E Sbjct: 203 KAIIGALYECSGLNRANLFVRDFIITQLEGKDIHEFLQIKDPLKIVNEILNRDNREPCEP 262 Query: 176 KVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 ++ +SG + V + + + A ++AA++ L+R Sbjct: 263 RIICKSGVNTILANYHVGLYSNKELVGHCSGETIDTAIEMAASDALRR 310 >gi|322798626|gb|EFZ20230.1| hypothetical protein SINV_08208 [Solenopsis invicta] Length = 375 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 YK ++ G DH FT+ V + G A G K++A+Q AA ++L Sbjct: 123 QQEKINPKEIHYKDLYQDGQDHQKIFTIEVIL-GSKKATGTGPCKKSAKQEAARKLLMSL 181 Query: 224 G 224 Sbjct: 182 N 182 Score = 44.5 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%) Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ F V A G SK+ A+ AA +L Sbjct: 32 NENRTLFVCNVS-YNKFYASGEGNSKKEAKHTAAENMLSLL 71 >gi|281414106|ref|ZP_06245848.1| RNAse III [Micrococcus luteus NCTC 2665] Length = 74 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%) Query: 23 LEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LE+ALTH S ++ + ERLEFLGD +LG +++ +F + EG+L+ R ++VS Sbjct: 8 LERALTHRSFAYEQGGLPTNERLEFLGDSVLGYVVTDHIFTVYPDLAEGDLARRRAAVVS 67 Query: 81 AET 83 Sbjct: 68 TRA 70 >gi|242014081|ref|XP_002427726.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212512167|gb|EEB14988.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 865 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + TP++++ F GPDH F V ++G+ + +K+ A+ Sbjct: 789 KHPVSLLNELCSRRKYGTPQFELCFECGPDHKKNFLFKVIVNGVEYTPTIASPNKKQAKV 848 Query: 214 VAAAEVLKREGIW 226 AAA L+ GI Sbjct: 849 EAAAVCLRALGII 861 >gi|321476628|gb|EFX87588.1| hypothetical protein DAPPUDRAFT_221551 [Daphnia pulex] Length = 200 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + L EW + P+Y+V SGP H + + ++ +G SK+AA+ VA Sbjct: 129 NPAGVLTEWCLTRLSNLPDYRVVRTSGPSHSKTYFMTCKLGDRV-TEGEGKSKKAAKNVA 187 Query: 216 AAEVLKRE 223 A ++L+ Sbjct: 188 AGKMLQIL 195 Score = 38.8 bits (88), Expect = 0.57, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 1/64 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEV 219 E Y + G H F + + + L + +G+ +K A+ AA ++ Sbjct: 21 FHELCTKFDFGVAMYNLVAEQGEPHSRTFLMNLTVDMLGISVEGIGLTKMQAKHDAAYKM 80 Query: 220 LKRE 223 + + Sbjct: 81 MFQI 84 >gi|189233967|ref|XP_001810552.1| PREDICTED: similar to staufen [Tribolium castaneum] gi|270015116|gb|EFA11564.1| staufen [Tribolium castaneum] Length = 724 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 1/125 (0%) Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 K+ + + A + D G + + Sbjct: 48 IPQQPQPKNNVQQVYHYENTASSETEQAQHNDTQQHQTGPNTSTSSAPPSTTLANIKEKT 107 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L + +Y++T SGP H FTV +++ + S + A+ AAA Sbjct: 108 PMCLVNELARYNKIQHQYQLTEESGPAHKKVFTVTLKLGNEEY-KSEGPSIKKAQHSAAA 166 Query: 218 EVLKR 222 + L + Sbjct: 167 QSLAK 171 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + A P Y V G F + ++G + G+ +K+ A++ A Sbjct: 456 NPISRLIQIQQANKEREPVYTVLEERGAPRRREFVIEASVNGHS-CTGVGPNKKIAKRNA 514 Query: 216 AAEVLKREG 224 A +L + G Sbjct: 515 AEALLNQLG 523 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H F + G A+G K+ +++ AA ++L+ Sbjct: 367 LSEKGPPHMKVFVTQCRV-GNFVAEGEGNGKKISKKRAAEKMLEEL 411 >gi|255080010|ref|XP_002503585.1| ribonuclease III/double strand RNA binding domain-containing protein [Micromonas sp. RCC299] gi|226518852|gb|ACO64843.1| ribonuclease III/double strand RNA binding domain-containing protein [Micromonas sp. RCC299] Length = 352 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 70/189 (37%), Gaps = 7/189 (3%) Query: 41 ERLEFLGDRILGLLISTLLFNH----FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 ER+ F GD+ L L ++ L ++ GE+SV +S S +++ +L Sbjct: 107 ERMAFFGDKYLNLSVAKALERQLLDGDETMSIGEMSVLCSSARSNMLFAKLLPKLLTPDM 166 Query: 97 IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 + + + + G A + + + A K + Sbjct: 167 VAAVPEEAIMEGRQHSVGTLLESCVYLVYTTGGGEGAAAVDELGTFLLEEAEKQAADVHN 226 Query: 157 AKTELQEWAHA--KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 K L E V + K+ SG H RF VE+ G A+ + +KR AE+ Sbjct: 227 YKGALYELIAKGVDGYVVTKDKMGEASGGAHPQRFETEVELDG-VRARFLARNKREAERG 285 Query: 215 AAAEVLKRE 223 AA VL++ Sbjct: 286 AAKRVLEKL 294 >gi|29292938|dbj|BAC66440.1| double stranded RNA-dependent protein kinase [Bos taurus] Length = 533 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 VT E + GP+ F + +I G+ +K+ A+Q+AA ++ Sbjct: 115 CVTYEECKSKGDGPEG---FHYICKIGQEEYGSGVGSTKQEAKQLAAKLAYEKI 165 Score = 40.3 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 17/45 (37%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV Y ++GP H+ RFT V I + S Sbjct: 15 NKYQQKNGVEVRYCELAKTGPPHNFRFTYQVIIDDKEYPKAEGRS 59 >gi|126321042|ref|XP_001367821.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 569 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK P+Y + G F + V++ G A A G+ SK+ A++ Sbjct: 305 MNPVSCLAQILQAKKEKEPDYALLSDRGKSRRREFLMQVKV-GSAVATGIGLSKKIAKRN 363 Query: 215 AAAEVLKREGIWT 227 AA +L G T Sbjct: 364 AAEAMLLHLGYKT 376 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + ++V SGP H F V + G A+G SK+ +++ AA+ +L+ Sbjct: 219 NMPVTFEVIKESGPPHMKNFVTRVSV-GEFSAEGEGNSKKLSKKRAASSILQELK 272 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 1/72 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L V P+YK+ GP H F+V + + Q S + Sbjct: 1 MANPKEKTPMCLVNELARFNRVQPQYKLLNERGPAHCKMFSVQLTLGEQTW-QSEGSSIK 59 Query: 210 AAEQVAAAEVLK 221 A+ AA + L+ Sbjct: 60 KAQHAAANKALR 71 >gi|24620514|gb|AAN61051.1| ADR-1E [Caenorhabditis elegans] Length = 893 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 11/136 (8%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + + + + + A E + + Sbjct: 396 YFMAKCTIIDHNENDLKFEVKSSSLASKAMAKDWVAQETLKNYFAIDPSSCVKTDAVSSQ 455 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP--------RFTVVVEISGLAPAQGMDCS 207 L + T + D+ P F I G+ S Sbjct: 456 GPCALLHAMLNK---QTKQKCKIAYEFKDNVPPVAGQATTTFYCECVIDETDRYIGVGRS 512 Query: 208 KRAAEQVAAAEVLKRE 223 K+ A+ AA + LK+ Sbjct: 513 KKLAKSEAAMQALKKL 528 >gi|332271595|gb|AEE36483.1| TAR RNA-binding protein isoform 3 [Marsupenaeus japonicus] Length = 296 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE A+ P Y++T G H+ F++ I G SK+ A++ A Sbjct: 129 NPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKLAKRQA 187 Query: 216 AAEV 219 A ++ Sbjct: 188 AYKM 191 Score = 37.6 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 7/28 (25%), Positives = 11/28 (39%) Query: 200 PAQGMDCSKRAAEQVAAAEVLKREGIWT 227 G + + A+ AA L+ I T Sbjct: 267 VCYGTGANVKEAQSAAAHNALEYLKIMT 294 >gi|332271593|gb|AEE36482.1| TAR RNA-binding protein isoform 2 [Marsupenaeus japonicus] Length = 323 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE A+ P Y++T G H+ F++ I G SK+ A++ A Sbjct: 129 NPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKLAKRQA 187 Query: 216 AAEV 219 A ++ Sbjct: 188 AYKM 191 >gi|332271591|gb|AEE36481.1| TAR RNA-binding protein isoform 1 [Marsupenaeus japonicus] Length = 343 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE A+ P Y++T G H+ F++ I G SK+ A++ A Sbjct: 129 NPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKLAKRQA 187 Query: 216 AAEV 219 A ++ Sbjct: 188 AYKM 191 Score = 37.6 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 7/28 (25%), Positives = 11/28 (39%) Query: 200 PAQGMDCSKRAAEQVAAAEVLKREGIWT 227 G + + A+ AA L+ I T Sbjct: 314 VCYGTGANVKEAQSAAAHNALEYLKIMT 341 >gi|328905029|gb|AEB54790.1| TRBP1 [Litopenaeus vannamei] Length = 343 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE A+ P Y++T G H+ F++ I G SK+ A++ A Sbjct: 129 NPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKLAKRQA 187 Query: 216 AAEV 219 A ++ Sbjct: 188 AYKM 191 >gi|195971116|gb|ACG60900.1| TAR RNA-binding protein 2 [Fenneropenaeus chinensis] Length = 343 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE A+ P Y++T G H+ F++ I G SK+ A++ A Sbjct: 129 NPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKLAKRQA 187 Query: 216 AAEV 219 A ++ Sbjct: 188 AYKM 191 >gi|221328530|gb|ACM17808.1| TAR RNA-binding protein 2 isoform 3 [Fenneropenaeus chinensis] Length = 296 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE A+ P Y++T G H+ F++ I G SK+ A++ A Sbjct: 129 NPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKLAKRQA 187 Query: 216 AAEV 219 A ++ Sbjct: 188 AYKM 191 >gi|221328528|gb|ACM17807.1| TAR RNA-binding protein 2 isoform 2 [Fenneropenaeus chinensis] Length = 323 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE A+ P Y++T G H+ F++ I G SK+ A++ A Sbjct: 129 NPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKLAKRQA 187 Query: 216 AAEV 219 A ++ Sbjct: 188 AYKM 191 >gi|117935051|ref|NP_835210.2| interferon-induced, double-stranded RNA-activated protein kinase [Bos taurus] gi|117306699|gb|AAI26647.1| Eukaryotic translation initiation factor 2-alpha kinase 2 [Bos taurus] gi|296482562|gb|DAA24677.1| protein kinase, interferon-inducible double stranded RNA dependent [Bos taurus] Length = 533 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 VT E + GP+ F + +I G+ +K+ A+Q+AA ++ Sbjct: 115 CVTYEECKSKGDGPEG---FHYICKIGQEEYGSGVGSTKQEAKQLAAKLAYEKI 165 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 17/45 (37%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 K GV Y ++GP H+ RFT V I + S Sbjct: 15 NKYQQKNGVEVRYCELAKTGPPHNFRFTYQVIIDDKEYPKAEGRS 59 >gi|170037804|ref|XP_001846745.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167881149|gb|EDS44532.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 896 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQ 213 + + L E+A + P Y + SGP H F V ++GL + + K+ A+ Sbjct: 822 KHPVSILGEYASKRKWNPPRYDLVHESGPGHAKNFVFKVIVNGLEYQPAISNNTKKDAKA 881 Query: 214 VAAAEVLKREGIW 226 AA L++ GI Sbjct: 882 TAARFCLQQLGIL 894 >gi|170104597|ref|XP_001883512.1| predicted protein [Laccaria bicolor S238N-H82] gi|164641576|gb|EDR05836.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1046 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 25/48 (52%) Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P + RSGP H +TVVV ++ + +G SK A++ AA L Sbjct: 753 PPHYEVARSGPAHAEDWTVVVTVNDIEYGRGTASSKNNAKRAAAEIAL 800 >gi|24620504|gb|AAN61050.1| ADR-1D [Caenorhabditis elegans] Length = 912 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 11/136 (8%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + + + + + A E + + Sbjct: 396 YFMAKCTIIDHNENDLKFEVKSSSLASKAMAKDWVAQETLKNYFAIDPSSCVKTDAVSSQ 455 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP--------RFTVVVEISGLAPAQGMDCS 207 L + T + D+ P F I G+ S Sbjct: 456 GPCALLHAMLNK---QTKQKCKIAYEFKDNVPPVAGQATTTFYCECVIDETDRYIGVGRS 512 Query: 208 KRAAEQVAAAEVLKRE 223 K+ A+ AA + LK+ Sbjct: 513 KKLAKSEAAMQALKKL 528 >gi|158290824|ref|XP_312385.4| AGAP002554-PA [Anopheles gambiae str. PEST] gi|157018083|gb|EAA08039.4| AGAP002554-PA [Anopheles gambiae str. PEST] Length = 648 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/145 (10%), Positives = 35/145 (24%), Gaps = 1/145 (0%) Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 V + + + F ++ + L + + Sbjct: 298 VEYCKKLFRFKTIRVLRFKSWAARRKFTKHRKHIKNLQRPTLPDGTKLITFPMLNIEDEQ 357 Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + + + + + + P ++ V I+ L Sbjct: 358 GNPHARPKKEWIMNPNGKSYVCILHEYVQHALRKQPTYEFKELENAATP-YSATVTINEL 416 Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ A+ AA E L+ Sbjct: 417 KYGTGYGTSKKQAKSEAARETLEIL 441 >gi|312095371|ref|XP_003148333.1| hypothetical protein LOAG_12772 [Loa loa] gi|307756502|gb|EFO15736.1| hypothetical protein LOAG_12772 [Loa loa] Length = 465 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 32/80 (40%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + + L + A+ P++++ G F + V +G+ Sbjct: 255 MKMNPEYGHQINPVSRLMQVMQARKQNEPKFQLVAERGQSRYKEFVMEVVCDDGLRCEGI 314 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA VL R G Sbjct: 315 GPNKKLAKRAAAEAVLARIG 334 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEV 219 + + E+ V GP HD + + ++ + A G SK+ A+Q A + + Sbjct: 156 HECALQMRMNVEFLVLKEEGPAHDRHYLLRCKLISAEQIISADGEGSSKKIAKQNACSLM 215 Query: 220 LKRE 223 L + Sbjct: 216 LTKL 219 >gi|32563647|ref|NP_871801.1| Adenosine Deaminase that acts on RNA family member (adr-1) [Caenorhabditis elegans] gi|27753106|emb|CAD60418.1| C. elegans protein H15N14.1e, confirmed by transcript evidence [Caenorhabditis elegans] Length = 893 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 11/136 (8%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + + + + + A E + + Sbjct: 396 YFMAKCTIIDHNENDLKFEVKSSSLASKAMAKDWVAQETLKNYFAIDPSSCVKTDAVSSQ 455 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP--------RFTVVVEISGLAPAQGMDCS 207 L + T + D+ P F I G+ S Sbjct: 456 GPCALLHAMLNK---QTKQKCKIAYEFKDNVPPVAGQATTTFYCECVIDETDRYIGVGRS 512 Query: 208 KRAAEQVAAAEVLKRE 223 K+ A+ AA + LK+ Sbjct: 513 KKLAKSEAAMQALKKL 528 >gi|170037189|ref|XP_001846442.1| tar RNA binding protein [Culex quinquefasciatus] gi|167880196|gb|EDS43579.1| tar RNA binding protein [Culex quinquefasciatus] Length = 390 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE A+ P Y+ G H+ +FT+ + G SK+ A++ A Sbjct: 173 NPIGWLQEMCMARRWPPPTYETEMEVGLPHERQFTIACAVL-KYREVGKGKSKKIAKRQA 231 Query: 216 AAEVLKRE 223 A + +R Sbjct: 232 AQRMWQRL 239 >gi|157119564|ref|XP_001659426.1| tar RNA binding protein (trbp) [Aedes aegypti] gi|108875294|gb|EAT39519.1| tar RNA binding protein (trbp) [Aedes aegypti] Length = 329 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE A+ P Y+ G H+ +FT+ + G SK+ A++ A Sbjct: 160 NPIGWLQEMCMARRWPPPTYETEMEVGLPHERQFTIACAVL-KYREVGKGKSKKIAKRQA 218 Query: 216 AAEVLKRE 223 A + +R Sbjct: 219 AQRMWQRL 226 Score = 37.6 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 188 RFTVVVEISGLAPA--QGMDCSKRAAEQVAAAEVLKREGIWT 227 RF +V++S L A G + + A+ AA L+ I T Sbjct: 286 RFQCLVQLSTLPVAVCHGSGSTAKEAQTAAARNSLEYLKIMT 327 >gi|32563645|ref|NP_492154.2| Adenosine Deaminase that acts on RNA family member (adr-1) [Caenorhabditis elegans] gi|27753105|emb|CAD60417.1| C. elegans protein H15N14.1d, confirmed by transcript evidence [Caenorhabditis elegans] Length = 912 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 11/136 (8%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + + + + + A E + + Sbjct: 396 YFMAKCTIIDHNENDLKFEVKSSSLASKAMAKDWVAQETLKNYFAIDPSSCVKTDAVSSQ 455 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP--------RFTVVVEISGLAPAQGMDCS 207 L + T + D+ P F I G+ S Sbjct: 456 GPCALLHAMLNK---QTKQKCKIAYEFKDNVPPVAGQATTTFYCECVIDETDRYIGVGRS 512 Query: 208 KRAAEQVAAAEVLKRE 223 K+ A+ AA + LK+ Sbjct: 513 KKLAKSEAAMQALKKL 528 >gi|32563643|ref|NP_492153.2| Adenosine Deaminase that acts on RNA family member (adr-1) [Caenorhabditis elegans] gi|25004982|emb|CAB09530.2| C. elegans protein H15N14.1c, confirmed by transcript evidence [Caenorhabditis elegans] Length = 964 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 11/136 (8%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + + + + + A E + + Sbjct: 467 YFMAKCTIIDHNENDLKFEVKSSSLASKAMAKDWVAQETLKNYFAIDPSSCVKTDAVSSQ 526 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP--------RFTVVVEISGLAPAQGMDCS 207 L + T + D+ P F I G+ S Sbjct: 527 GPCALLHAMLNK---QTKQKCKIAYEFKDNVPPVAGQATTTFYCECVIDETDRYIGVGRS 583 Query: 208 KRAAEQVAAAEVLKRE 223 K+ A+ AA + LK+ Sbjct: 584 KKLAKSEAAMQALKKL 599 >gi|312871873|ref|ZP_07731957.1| hypothetical protein HMPREF9219_0396 [Lactobacillus iners LEAF 3008A-a] gi|311092595|gb|EFQ50955.1| hypothetical protein HMPREF9219_0396 [Lactobacillus iners LEAF 3008A-a] Length = 35 Score = 54.9 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 17/35 (48%), Positives = 24/35 (68%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 FTV + ++G +QG+ SK+AAEQVAA+ LK Sbjct: 1 FTVQLIVAGENISQGIGRSKKAAEQVAASVALKNI 35 >gi|36963075|gb|AAQ87664.1| staufen [Mus musculus] Length = 436 Score = 54.9 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGP H V + G +G SK+ +++ AA VL++ Sbjct: 126 SGPPHMKNVVTRVPV-GEFVGEGEGKSKKISKKNAARAVLEQL 167 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + L + AK PEY + G F + V++ G A+G+ +K+ A++ Sbjct: 203 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 261 Query: 215 AAAEVLKREG 224 AA +L+ G Sbjct: 262 AAENMLEILG 271 >gi|7504924|pir||T23094 hypothetical protein H15N14.1a - Caenorhabditis elegans Length = 959 Score = 54.9 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 11/136 (8%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + + + + + A E + + Sbjct: 462 YFMAKCTIIDHNENDLKFEVKSSSLASKAMAKDWVAQETLKNYFAIDPSSCVKTDAVSSQ 521 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP--------RFTVVVEISGLAPAQGMDCS 207 L + T + D+ P F I G+ S Sbjct: 522 GPCALLHAMLNK---QTKQKCKIAYEFKDNVPPVAGQATTTFYCECVIDETDRYIGVGRS 578 Query: 208 KRAAEQVAAAEVLKRE 223 K+ A+ AA + LK+ Sbjct: 579 KKLAKSEAAMQALKKL 594 >gi|159163523|pdb|1X48|A Chain A, Solution Structure Of The Second Dsrm Domain In Interferon- Induced, Double-Stranded Rna-Activated Protein Kinase Length = 88 Score = 54.9 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 17/37 (45%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF +I G +K+ A+Q+AA E ++ Sbjct: 36 QRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKL 72 >gi|328710263|ref|XP_003244208.1| PREDICTED: hypothetical protein LOC100575225 [Acyrthosiphon pisum] Length = 407 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G H P FT + + + A G SK+ A+Q AAA++ ++ Sbjct: 16 VAITGHAHKPIFTYMCQTHNMK-ALGEGKSKKEAKQNAAAQMCEKL 60 >gi|321456688|gb|EFX67789.1| hypothetical protein DAPPUDRAFT_261055 [Daphnia pulex] Length = 279 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +E +GY F ++ L+ LTH S + E +RLE LGD +LG L+ + + Sbjct: 74 LAVIETTLGYEFRHKENLKLPLTHISTNPNKVPSEDSDRLETLGDILLGTLVMAICYTTC 133 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 + GEL+ + + +T + +A + L + + + + R Sbjct: 134 PTYGAGELTNLTSMITCNDTFAVLAVRMGLHAHLNHNMNKRN 175 >gi|193787146|dbj|BAG52352.1| unnamed protein product [Homo sapiens] Length = 365 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + L + AK PEY + G F + V++ A+G Sbjct: 63 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 121 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A++ AA +L+ G Sbjct: 122 GTNKKVAKRNAAENMLEILG 141 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F V + G +G SK+ +++ AA VL+ Sbjct: 2 KNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 38 >gi|195398117|ref|XP_002057671.1| GJ17975 [Drosophila virilis] gi|194141325|gb|EDW57744.1| GJ17975 [Drosophila virilis] Length = 481 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE + P Y+ G H+ FT+ I G SK+ A+++A Sbjct: 266 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACTILNFRE-VGKGKSKKIAKRLA 324 Query: 216 AAEVLKRE 223 A ++ R Sbjct: 325 AHKMWTRL 332 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223 TP Y++ G H+P F V A G SK+ A+ AA ++ + Sbjct: 165 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 219 >gi|194382068|dbj|BAG58789.1| unnamed protein product [Homo sapiens] Length = 200 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 K K + + LQE A PEY ++ GP H +T + + G Sbjct: 1 MPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLE-SFMETG 59 Query: 204 MDCSKRAAEQVAAAEVLKR 222 SK+ A++ AA + L + Sbjct: 60 KGASKKQAKRNAAEKFLAK 78 >gi|13358446|ref|NP_078726.1| Ribonuclease III [Lymphocystis disease virus 1] Length = 251 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 69/211 (32%), Gaps = 12/211 (5%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVR 74 ++ L +A T +S+ +YE E LGD + + + F + + ++ Sbjct: 28 DKEL-IQAFTPASVDPII--NYESFEILGDGVAAYFLPMYFYKTFPQLQNAKGVKAIARL 84 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 + S + + +A+ L +I+ +L+ D + + + ++ L +E Sbjct: 85 KINYASRRSFATIAKFLGFWPYIKKPKNLKCDQKKLLEDVFESFLGAVCLILDGHFNVEG 144 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVV 192 G V + + + + K T G F Sbjct: 145 VGAAVCFNFLKNIFDTMTIEINYKALF---DPKTRLKELMDIYTAELGVLAYRHFNNKTD 201 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 I +K+ EQ ++ +VL+ Sbjct: 202 CYIGDKLMITVYGSNKKDREQDSSDKVLELL 232 >gi|297740221|emb|CBI30403.3| unnamed protein product [Vitis vinifera] Length = 853 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 23/71 (32%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + + + D +F+V V +G GM +++ A+ Sbjct: 668 NMMPPHLSIGVLQEIGRRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGKTRKDAQ 727 Query: 213 QVAAAEVLKRE 223 Q AA L Sbjct: 728 QQAAENALHSL 738 >gi|225440662|ref|XP_002274594.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 859 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 23/71 (32%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + + + D +F+V V +G GM +++ A+ Sbjct: 674 NMMPPHLSIGVLQEIGRRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGKTRKDAQ 733 Query: 213 QVAAAEVLKRE 223 Q AA L Sbjct: 734 QQAAENALHSL 744 >gi|327198659|emb|CCA61360.1| unnamed protein product [Diadromus pulchellus ascovirus 4a] Length = 257 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 70/216 (32%), Gaps = 12/216 (5%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSV 73 N + A T + + + +YE E LGD + I + + F + L+ Sbjct: 24 NNSKIFAAAFT--TADYDPKFNYEFFEQLGDLTINKFIVSYMSRRFPQLRNRNGVNVLAT 81 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S S ++ + L +R++ + D M S+ DV E+L A+ + Sbjct: 82 LRILYGSKNVLSGLSSKYGLDKLVRMTREESLDKTKSM-SVFEDVFEALFGAIEFVFDRD 140 Query: 134 VAGTFVDKYWKQRALKSG-----KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 + + K ++ + + + S + Sbjct: 141 NFPGMGYVFCYRILTAMFDDLDVKIDYESLVDAKTRLNELKAEHKFSLTYRDSRDEASGM 200 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F I G+A G +K+ A+ A+ + G Sbjct: 201 FRSTAVIDGIAAGSGESNTKKGAQIEASQRAIDWLG 236 >gi|116204679|ref|XP_001228150.1| hypothetical protein CHGG_10223 [Chaetomium globosum CBS 148.51] gi|88176351|gb|EAQ83819.1| hypothetical protein CHGG_10223 [Chaetomium globosum CBS 148.51] Length = 327 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 73/234 (31%), Gaps = 30/234 (12%) Query: 19 NRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 + +L ALTHS + + SYE+LE++GD L L+ S L+ F + G S Sbjct: 68 DSALETAALTHSGMRKNLSDPSYEQLEWIGDVYLELIASELISQTFPTLDPGRSSHYREM 127 Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDV--------CSFMTSIQADVVESLIAALYLD 129 LV T Q A L ++ D+ E+ + A+ Sbjct: 128 LVRNSTLGQFAVHYGLDKRANFPAEFGLGGRPNGTKASEKQRAKALGDIFEAYVGAIVRS 187 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG------- 182 + + R+ ++ + T ++ G Sbjct: 188 DPENGMRRAAEWLKMLWGPVLERQIREEESGSRVKDRDLNPKTQLEQMIGGPGVRIEYKD 247 Query: 183 ---------PDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222 + F V ++G L G K+ A Q AA + ++ Sbjct: 248 LPSGGKKDRDTNQELFFVGCFLTGWGETSLQLGYGGALGKKEAGQKAAVKAMEN 301 >gi|307215189|gb|EFN89961.1| Interferon-inducible double stranded RNA-dependent protein kinase activator A [Harpegnathos saltator] Length = 381 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K + LQE ++ P+Y + G H+ +FT+V I G SK+ A Sbjct: 165 KVMNNPIGALQEMCMSRHWPPPKYTMEGEEGLPHERQFTIVCSIL-KYREVGQGKSKKVA 223 Query: 212 EQVAAAEVLKRE 223 ++ AA ++ + Sbjct: 224 KRHAAHKMWQAL 235 >gi|294464151|gb|ADE77592.1| unknown [Picea sitchensis] Length = 505 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 26/63 (41%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + K G+ VT RSGP H P F V+ +G A SK+ AE+ AA Sbjct: 345 MYKNFLQEFAQKEGIPFPEYVTDRSGPSHIPIFKSTVKFAGTTFAGKEANSKKQAEKNAA 404 Query: 217 AEV 219 Sbjct: 405 MAA 407 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 K V+ + R GPDH PRF V +G A + + A+ AA L+ Sbjct: 11 QKHCVSLPEYKSTREGPDHAPRFKATVTYNGRAFESPAFCKTAKEAQNAAAEFALEVL 68 >gi|321451683|gb|EFX63253.1| hypothetical protein DAPPUDRAFT_335709 [Daphnia pulex] gi|321454090|gb|EFX65276.1| hypothetical protein DAPPUDRAFT_333337 [Daphnia pulex] Length = 121 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 30/69 (43%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LE I Y F N+ +L +A TH + + SYE+LE+LG+ L + ++ Sbjct: 20 LDQLEIIINYKFNNQLILLEASTHGTFHNPLCSSYEKLEYLGEIKLEQIDFEPTGIRYEQ 79 Query: 66 AKEGELSVR 74 R Sbjct: 80 MSVQIKIPR 88 >gi|321451187|gb|EFX62921.1| hypothetical protein DAPPUDRAFT_336204 [Daphnia pulex] Length = 158 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 1/133 (0%) Query: 9 LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 E+ GY F + +L +AL + S S + +RLE +GD +LG+L+S LF Sbjct: 26 FEEIFGYKFKDEEMLHQALKRPTASLKSSVKKGDRLELVGDAVLGILVSIGLFRTITMYN 85 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G+L+ ++L + + + + F+ + Q L Sbjct: 86 PGDLTRHRSALTCNDCFGVLTVKFGIHKFLLGLPPSLLHNVNEFAENQEKAAHPYSNMLG 145 Query: 128 LDGGIEVAGTFVD 140 G + + Sbjct: 146 KLGTSMSNSSTMH 158 >gi|313243028|emb|CBY39738.1| unnamed protein product [Oikopleura dioica] Length = 324 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + LQE ++ P+Y + +GP H F + + L G Sbjct: 116 NDQSMIHAGEINPIGTLQELVVSRGWRLPDYSLASEAGPSHKKEFIICCSVEKLKE-YGS 174 Query: 205 DCSKRAAEQVAAAEVLKRE 223 SK+ A++ AA +L R Sbjct: 175 GSSKKVAKRNAAGAMLSRM 193 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 TP Y + G H P F + L +G SK++A+ AA VL + Sbjct: 45 KTPRYDLLTMEGRAHQPSFVFRCVVGDLT-GEGHGTSKKSAKHQAAENVLAQLK 97 >gi|313229252|emb|CBY23838.1| unnamed protein product [Oikopleura dioica] Length = 343 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + LQE ++ P+Y + +GP H F + + L G Sbjct: 135 NDQSMIHAGEINPIGTLQELVVSRGWRLPDYSLASEAGPSHKKEFIICCSVEKLKE-YGS 193 Query: 205 DCSKRAAEQVAAAEVLKRE 223 SK+ A++ AA +L R Sbjct: 194 GSSKKVAKRNAAGAMLSRM 212 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 TP Y + G H P F + L +G SK++A+ AA VL + Sbjct: 64 KTPRYDLLTMEGRAHQPSFVFRCVVGDLT-GEGHGTSKKSAKHQAAENVLAQLK 116 >gi|195153156|ref|XP_002017495.1| GL22329 [Drosophila persimilis] gi|194112552|gb|EDW34595.1| GL22329 [Drosophila persimilis] Length = 854 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQ 213 + L E P+Y + SGP H F VEI+G + +K+ A+ Sbjct: 779 KHPVCVLNELTSKNRWTPPQYILQQESGPSHIRSFLFSVEINGQSYTPDRPCNNKKEAKL 838 Query: 214 VAAAEVLKREGIW 226 AA L+ GI Sbjct: 839 NAAKLCLESLGIL 851 >gi|125777342|ref|XP_001359575.1| GA20947 [Drosophila pseudoobscura pseudoobscura] gi|54639322|gb|EAL28724.1| GA20947 [Drosophila pseudoobscura pseudoobscura] Length = 851 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQ 213 + L E P+Y + SGP H F VEI+G + +K+ A+ Sbjct: 776 KHPVCVLNELTSKNRWTPPQYILQQESGPSHIRSFLFSVEINGQSYTPDRPCNNKKEAKL 835 Query: 214 VAAAEVLKREGIW 226 AA L+ GI Sbjct: 836 NAAKLCLESLGIL 848 >gi|289183784|ref|YP_003457325.1| dsRNA-binding interferon resistance protein [Pseudocowpox virus] gi|288804256|gb|ADC53921.1| dsRNA-binding interferon resistance protein [Pseudocowpox virus] Length = 180 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 22/54 (40%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 T E+ T G DH P FT + +SG A SK+ A A A L Sbjct: 116 MITHRTLEFCETRSGGQDHCPNFTCTIVVSGKVIATATGTSKKLARHAACATAL 169 >gi|255944467|ref|XP_002563001.1| Pc20g04580 [Penicillium chrysogenum Wisconsin 54-1255] gi|211587736|emb|CAP85787.1| Pc20g04580 [Penicillium chrysogenum Wisconsin 54-1255] Length = 151 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 5/98 (5%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 + LE IGY F +RSLLE+AL + E ERL LGD++L L++ + ++ Sbjct: 3 AELESLIGYQFHDRSLLEEAL---EEAGPQTEGNERLALLGDKVLSLMLLHRWYMEGNTT 59 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 ++G + + AR LD F+ D++ Sbjct: 60 EQG--TNLLQIYAGNKHLISRARALDFPKFVIQRLDIK 95 >gi|302782383|ref|XP_002972965.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii] gi|302823467|ref|XP_002993386.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii] gi|300138817|gb|EFJ05571.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii] gi|300159566|gb|EFJ26186.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii] Length = 386 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 28/67 (41%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L + + V T RSGP H P FT VVE++G+ +K+ AE+ AA Sbjct: 88 FKNLLQETAQRANVPLPTYTTTRSGPGHLPVFTCVVEVAGMNFTGDAGKTKKQAEKNAAM 147 Query: 218 EVLKREG 224 Sbjct: 148 AAWATLK 154 >gi|166157977|ref|NP_001107398.1| spermatid perinuclear RNA binding protein [Xenopus (Silurana) tropicalis] gi|163916317|gb|AAI57348.1| LOC100135229 protein [Xenopus (Silurana) tropicalis] Length = 698 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 1/101 (0%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + DG + R + K + + +YK+ +SGP H Sbjct: 357 FDDGSCDEKDPNKKMKRNLRKVLDSKVIDSNQPMNALMRLNQIRPGLQYKLLSQSGPVHA 416 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 P FT+ V++ G + SK+ A+ A +VL+ G T Sbjct: 417 PVFTMSVDVDGTTH-EASGPSKKTAKLHVAVKVLQAMGYPT 456 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SG HD RF + VE+ +G +K+ Sbjct: 530 ISESGGSHDKRFVMEVEVDAQKF-RGAGPNKK 560 >gi|156369805|ref|XP_001628164.1| predicted protein [Nematostella vectensis] gi|156215134|gb|EDO36101.1| predicted protein [Nematostella vectensis] Length = 474 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 68/225 (30%), Gaps = 20/225 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI------SHSYQESYERLEFLGDRILGLLISTLL 59 R+ F + LL ALTH E +L LG + I+ L Sbjct: 88 LFAFRNRLSLVFEDERLLRAALTHELCEEDLVKDKEKIEENSKLALLGHNLTSQYITEYL 147 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + + N L + ET +VA L IR DL + + V Sbjct: 148 CFKYPNLPSEGVRQLHNFLTNRETLVKVADLTALPELIRTKHDLDSLKKEKHVEVTKEDV 207 Query: 120 E---------SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 ++ + F+ + L + + L+ ++ Sbjct: 208 ISDAFLALIGAIYLDQGSSEANKFVRDFLITQLYTQELNQVLQFENPEALLESMVLSEGH 267 Query: 171 VTPEYKVTFRSGPD-HDPRFTVVVEISGLAPAQGMDCS----KRA 210 PE ++T +SG H P + V + + + KR Sbjct: 268 TKPEARITRQSGKATHLPVYVVGLFCGEELIGEAAGYNLVNAKRE 312 >gi|24620493|gb|AAN61049.1| ADR-1C [Caenorhabditis elegans] Length = 964 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 11/136 (8%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + + + + + A E + + Sbjct: 467 YFMAKYTIIDHNENDLKFEVKSSSLASKAMAKDWVAQETLKNYFAIDPSSCVKTDAVSSQ 526 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP--------RFTVVVEISGLAPAQGMDCS 207 L + T + D+ P F I G+ S Sbjct: 527 GPCALLHAMLNK---QTKQKCKIAYEFKDNVPPVAGQATTTFYCECVIDETDRYIGVGRS 583 Query: 208 KRAAEQVAAAEVLKRE 223 K+ A+ AA + LK+ Sbjct: 584 KKLAKSEAAMQALKKL 599 >gi|296044644|gb|ADG85736.1| type 2 double stranded RNA activated protein kinase [Gadus morhua] Length = 624 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 19/34 (55%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 RFT V ++G +G+ +K+ A Q AA L+ Sbjct: 5 RFTQRVILNGKPYPEGVGKNKKEARQNAAKHALE 38 Score = 43.0 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 2/116 (1%) Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 + + Q +L + L D + + + + + + L E + Sbjct: 22 GKNKKEARQNAAKHALESVLETDSDHSHVSGWSMRDATEPINQVRLTQPNYTCWLNEHSQ 81 Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K + T H + + G G +K+ A++ AA V ++ Sbjct: 82 KKRVCIRALESTAME-LGHTKQ-CCKFVLDGTEYPSGSGRTKKEAKEDAARLVYEK 135 >gi|26347661|dbj|BAC37479.1| unnamed protein product [Mus musculus] Length = 300 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A +VL+ Sbjct: 21 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 79 Query: 224 GIWT 227 G T Sbjct: 80 GCPT 83 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 158 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 186 >gi|67925688|ref|ZP_00519002.1| Ribonuclease III [Crocosphaera watsonii WH 8501] gi|67852471|gb|EAM47916.1| Ribonuclease III [Crocosphaera watsonii WH 8501] Length = 328 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 67/143 (46%), Gaps = 5/143 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFN 61 S ++++I + F N LL +L+ S + +RLE LG+ +L L+I L++ Sbjct: 4 NSSLVQEKISFNFKNTDLLFLSLSDPSYGKQINQPDSDNQRLESLGENLLALIIIDYLYH 63 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCS-FMTSIQADVV 119 HF +++ + L+ E + + L L + + + + T+ + Sbjct: 64 HFPYLTLSKMTALQDKLLDKEKLTNLWFSLGLGESYPFLDVNQERHRLRVKTTNPFEKSL 123 Query: 120 ESLIAALYLDGGIEVAGTFVDKY 142 ++L+AA+++D G + + +K+ Sbjct: 124 KALVAAIHVDRGFSHSYNWFNKH 146 >gi|222630219|gb|EEE62351.1| hypothetical protein OsJ_17140 [Oryza sativa Japonica Group] Length = 606 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 T RSGP H P FT VE++G+ +K+ A++ AA LK+ Sbjct: 119 YTTIRSGPGHTPVFTCTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQL 169 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 R GPDH PRF V +G + R AE AA L Sbjct: 27 CFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAAAEVALNEL 81 >gi|115462131|ref|NP_001054665.1| Os05g0150400 [Oryza sativa Japonica Group] gi|122169532|sp|Q0DKP4|DRB2_ORYSJ RecName: Full=Double-stranded RNA-binding protein 2; AltName: Full=dsRNA-binding protein 2; AltName: Full=dsRNA-binding protein 3; Short=OsDRB3 gi|113578216|dbj|BAF16579.1| Os05g0150400 [Oryza sativa Japonica Group] Length = 593 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 T RSGP H P FT VE++G+ +K+ A++ AA LK+ Sbjct: 106 YTTIRSGPGHTPVFTCTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQL 156 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAAAEVALNEL 68 >gi|168061835|ref|XP_001782891.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] gi|162665613|gb|EDQ52291.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] Length = 151 Score = 54.5 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 28/63 (44%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L + K G + R G +H F+ VEI+G++ + G SK+ AE AA Sbjct: 84 CKNLLQEFAQKHGYPLPQYKSVRQGEEHSLVFSSTVEIAGVSYSGGCAKSKKEAEIKAAR 143 Query: 218 EVL 220 L Sbjct: 144 TAL 146 >gi|213627304|gb|AAI71078.1| hypothetical protein LOC100135229 [Xenopus (Silurana) tropicalis] Length = 698 Score = 54.5 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 1/101 (0%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + DG + R + K + + +YK+ +SGP H Sbjct: 357 FDDGSCDEKDPNKKMKRNLRKVLDSKAIDSNQPMNALMRLNQIRPGLQYKLLSQSGPVHA 416 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 P FT+ V++ G + SK+ A+ A +VL+ G T Sbjct: 417 PVFTMSVDVDGTTH-EASGPSKKTAKLHVAVKVLQAMGYPT 456 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SG HD RF + VE+ +G +K+ Sbjct: 530 ISESGGSHDKRFVMEVEVDAQKF-RGAGPNKK 560 >gi|169642169|gb|AAI60423.1| LOC100135229 protein [Xenopus (Silurana) tropicalis] Length = 675 Score = 54.5 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 1/101 (0%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + DG + R + K + + +YK+ +SGP H Sbjct: 357 FDDGSCDEKDPNKKMKRNLRKVLDSKAIDSNQPMNALMRLNQIRPGLQYKLLSQSGPVHA 416 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 P FT+ V++ G + SK+ A+ A +VL+ G T Sbjct: 417 PVFTMSVDVDGTTH-EASGPSKKTAKLHVAVKVLQAMGYPT 456 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 SG HD RF + VE+ +G +K+ Sbjct: 530 ISESGGSHDKRFVMEVEVDAQKF-RGAGPNKK 560 >gi|156387818|ref|XP_001634399.1| predicted protein [Nematostella vectensis] gi|156221482|gb|EDO42336.1| predicted protein [Nematostella vectensis] Length = 69 Score = 54.5 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 ++ LQE K PEYK GP H +F +VV + G A G SK+ Sbjct: 1 MASHLNSVGRLQEVTVKKGWQYPEYKDVKAKGPPHMRQFEMVVTV-GTLTATGKGRSKKD 59 Query: 211 AEQVAAAEVL 220 A++ AA +L Sbjct: 60 AKRSAANAML 69 >gi|322789739|gb|EFZ14905.1| hypothetical protein SINV_08859 [Solenopsis invicta] Length = 885 Score = 54.5 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + LQE ++ P+Y + G H+ +FT+V I G SK+ A++ Sbjct: 171 NNPIGALQEMCMSRHWPPPKYTMEGEEGLPHERQFTIVCSIL-KYREVGQGKSKKVAKRQ 229 Query: 215 AAAEVLKRE 223 AA ++ + Sbjct: 230 AAHKMWQAL 238 >gi|224150739|ref|XP_002337003.1| predicted protein [Populus trichocarpa] gi|222837556|gb|EEE75921.1| predicted protein [Populus trichocarpa] Length = 330 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLKRE 223 T +SG H P F VEI G G +K+ AE AA Sbjct: 101 YWTDKSGEAHVPTFVSKVEIEGE-IFTGQGAKTKKQAEMSAAKIAYTAL 148 >gi|208690903|gb|ACI31227.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Miopithecus talapoin talapoin] Length = 550 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 3/50 (6%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V E GP+ F +I + G +K+ A+Q+AA L Sbjct: 116 VNYEQCTLGVHGPEG---FHYKCKIGDKEYSIGTGSTKQEAKQLAAKLAL 162 >gi|242014706|ref|XP_002428026.1| Double-stranded RNA-specific editase Adar, putative [Pediculus humanus corporis] gi|212512545|gb|EEB15288.1| Double-stranded RNA-specific editase Adar, putative [Pediculus humanus corporis] Length = 669 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 ++GP + P FT V+I+G+ G +K+ A+ AA L Sbjct: 65 QNGPGNSPIFTTTVDINGVRY-IGRGKNKKLAKHNAAEAAL 104 >gi|198415842|ref|XP_002129369.1| PREDICTED: similar to TAR (HIV) RNA binding protein 2 [Ciona intestinalis] Length = 326 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 TP+Y +T G H P+F + A G SK+ A+ AA VLK Sbjct: 35 KTPQYDLTALEGRAHQPQFVYRCMVGD-VTATGQGGSKKIAKHAAAEAVLKTL 86 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 1/128 (0%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + + D+ I + +G +E Sbjct: 55 YRCMVGDVTATGQGGSKKIAKHAAAEAVLKTLTNGLVEPESFPDVMETSAVEYGRDVDDT 114 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE A+ PEY + +GP H F + + G +K+ A+++A Sbjct: 115 NPVGSLQELVVARGWRLPEYALAHETGPAHKKEFIICCTVESFKE-YGSGSAKKHAKRLA 173 Query: 216 AAEVLKRE 223 AA + + Sbjct: 174 AANMFTKI 181 >gi|255637537|gb|ACU19095.1| unknown [Glycine max] Length = 359 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K LQE+A P Y+ P F+ V+I G+ G +K+ A Sbjct: 97 HETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEA 156 Query: 212 EQVAAAEVL 220 E AA L Sbjct: 157 EIKAARTAL 165 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKRE 223 T + GP H+P F V ++ + +++AAEQ AA L Sbjct: 34 YETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALVEL 82 >gi|148683240|gb|EDL15187.1| adenosine deaminase, RNA-specific, isoform CRA_c [Mus musculus] Length = 700 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +E + + + F + K G + E+++ + GP HDP+ Sbjct: 61 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 120 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 121 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 155 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 218 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 263 Score = 42.6 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 15/32 (46%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 RF V I+G SK+ A+Q AA + Sbjct: 9 RFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 40 >gi|148683241|gb|EDL15188.1| adenosine deaminase, RNA-specific, isoform CRA_d [Mus musculus] Length = 674 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +E + + + F + K G + E+++ + GP HDP+ Sbjct: 61 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 120 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 121 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 155 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 218 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 263 Score = 42.6 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 15/32 (46%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 RF V I+G SK+ A+Q AA + Sbjct: 9 RFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 40 >gi|13236212|gb|AAK16101.1|AF291875_1 RNA adenosine deaminase 1 [Mus musculus] Length = 634 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +E + + + F + K G + E+++ + GP HDP+ Sbjct: 21 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 80 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 81 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 115 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 178 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 223 >gi|13236216|gb|AAK16103.1|AF291877_1 RNA adenosine deaminase 1 [Mus musculus] Length = 660 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 +E + + + F + K G + E+++ + GP HDP+ Sbjct: 21 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 80 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + SK+ A+Q+AA E +K Sbjct: 81 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 115 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+P+F ++ G SK+ +Q AA L+ Sbjct: 178 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 223 >gi|312374197|gb|EFR21805.1| hypothetical protein AND_16335 [Anopheles darlingi] Length = 358 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 15/145 (10%), Positives = 35/145 (24%), Gaps = 1/145 (0%) Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 V + + + F ++ + L + + Sbjct: 213 VEYCKQLFHFKTVRVLRFKSWAARRKFTKHRKHIKNLQRPTLPDGTKLITFPMLNMEDEA 272 Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + + + + + + P ++ V I+ L Sbjct: 273 GNPHARPKKEWIMNPNGKSYVCILHEYVQHALRKQPAYEFKELENAATP-YSATVTINEL 331 Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ A+ AA E L+ Sbjct: 332 KYGTGYGTSKKQAKSEAARETLEIL 356 >gi|154150151|ref|YP_001403769.1| ribonuclease III [Candidatus Methanoregula boonei 6A8] gi|153998703|gb|ABS55126.1| ribonuclease III [Methanoregula boonei 6A8] Length = 196 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 11/169 (6%) Query: 1 MSAL----RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY------ERLEFLGDRI 50 M ++ + LE+ IGY F + L +ALTHS+ ++ + + LGD + Sbjct: 1 MKSMEKKENLAELERIIGYHFFEQQHLIRALTHSAYANEVIQKNRICLTQDAYSTLGDAV 60 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 L + ++G ++ L + +Q+ R L + F+R+ + S Sbjct: 61 LKTSLIL-FLMEKGLQEKGAITRAKEQLEDNASLAQIGRRLKIRRFVRLGRGEKDLWKSG 119 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT 159 +I AD VE++I A+YLD + + R + Sbjct: 120 EDTILADTVEAIIGAVYLDSDASLGVVRQCIGAWLEPELARVRREEPPR 168 >gi|307172924|gb|EFN64091.1| Interferon-inducible double stranded RNA-dependent protein kinase activator A [Camponotus floridanus] Length = 376 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + LQE ++ P+Y + G H+ +FT+V I G SK+ A++ Sbjct: 163 NNPIGALQEMCMSRHWPPPKYTMEGEEGLPHERQFTIVCSIL-KYREVGQGKSKKVAKRH 221 Query: 215 AAAEVLKRE 223 AA ++ + Sbjct: 222 AAHKMWQAL 230 >gi|224146035|ref|XP_002325855.1| predicted protein [Populus trichocarpa] gi|222862730|gb|EEF00237.1| predicted protein [Populus trichocarpa] Length = 281 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 23/62 (37%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L + + G T +SG H P F VEI G+ +K+ AE AA Sbjct: 214 YKNLLQDMAQREGCGLPTYFTEKSGEAHAPTFISTVEIDGVNFTGKEARNKKQAEMSAAK 273 Query: 218 EV 219 Sbjct: 274 IA 275 >gi|332029664|gb|EGI69553.1| Interferon-inducible double stranded RNA-dependent protein kinase activator A [Acromyrmex echinatior] Length = 377 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + LQE ++ P+Y + G H+ +FT+V I G SK+ A++ Sbjct: 164 NNPIGALQEMCMSRHWPPPKYSMEGEEGLPHERQFTIVCSIL-KYREVGQGKSKKVAKRH 222 Query: 215 AAAEVLKRE 223 AA ++ + Sbjct: 223 AAHKMWQAL 231 >gi|330889504|gb|EGH22165.1| ribonuclease III [Pseudomonas syringae pv. mori str. 301020] Length = 171 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 75/154 (48%), Gaps = 3/154 (1%) Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 F A+EG+LS LV ET + +AR DL ++R+ S K SI AD +E+L Sbjct: 1 FPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 60 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 I A+YLD G+E A V + +D KT LQE+ ++ P Y+V Sbjct: 61 IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDI 120 Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 G H F V EI+ L ++G S+R AEQ Sbjct: 121 QGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 154 >gi|321259818|ref|XP_003194629.1| hypothetical protein CGB_F1490W [Cryptococcus gattii WM276] gi|317461101|gb|ADV22842.1| Hypothetical Protein CGB_F1490W [Cryptococcus gattii WM276] Length = 433 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 91/264 (34%), Gaps = 58/264 (21%) Query: 19 NRSLLEKALTHSSISHSYQES-----------YERLEFLGDRILGLLISTLLFNHFDSAK 67 +R LL + TH+S + ++S E+LE +GD +LG +++ LL + + + Sbjct: 170 DRELLRQVFTHTSYVGARKQSALFDKEAFHHDNEKLEHVGDALLGCIVTCLLHDLYPNLN 229 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G + V +T SQ++R + + + ++ T A++ E+ +A L+ Sbjct: 230 PGNATEMKAICVCNQTLSQLSRRYKMPERLITDVNA-TEILKNGTKTTANIFEAYVAGLH 288 Query: 128 --------------------LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 G+E ++ ++ A + + + L+ Sbjct: 289 YSYLKHGNTKDVDGGDGPKTHGQGLEHLQEWLRPLFEPIAEWVLGYMKKEQERLEAETAV 348 Query: 168 KFGVTPEYKVTFRSGPDHD------------PRFTVV---------VEI----SGLAP-A 201 K G +G P +T + I G Sbjct: 349 KAGSMDTDLDDLANGASGKLNELFISRGAGMPVYTYEPWGVDMWKAIVIARNRDGKEWQG 408 Query: 202 QGMDCSKRAAEQVAAAEVLKREGI 225 + K+ A VAA +VL + + Sbjct: 409 EATRTKKKQAATVAAYKVLMQLEV 432 >gi|307167407|gb|EFN60992.1| Interferon-inducible double stranded RNA-dependent protein kinase activator A-like protein [Camponotus floridanus] Length = 341 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + +A ELQ+ + PEY +T +GP H FT+ ++S +G+ Sbjct: 99 PPKIPANVPFVNAIGELQDLCAENNLMEPEYVLTKDTGPPHARIFTIQCKVSN-FVEEGV 157 Query: 205 DCSKRAAEQVAAAEVLKREG 224 +K+ A+ AA ++++R Sbjct: 158 QSTKKQAKHEAARKMVERIK 177 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + + K G+ P+Y++ G H FT V GL A G K+ A+ Sbjct: 1 MSKTPVSILQEMMVKQGMVPDYELIHNGGGRHVNTFTYRVICDGLT-AIGSGRCKKEAKH 59 Query: 214 VAAAEVL 220 AA +L Sbjct: 60 EAAKAML 66 >gi|195434256|ref|XP_002065119.1| GK14845 [Drosophila willistoni] gi|194161204|gb|EDW76105.1| GK14845 [Drosophila willistoni] Length = 512 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE + P Y+ G H+ FT+ I G SK+ A+++A Sbjct: 297 NPIGWLQEMCMQRRWPPPSYETETELGLPHERLFTIACTILNYRE-VGKGKSKKIAKRLA 355 Query: 216 AAEVLKRE 223 A ++ R Sbjct: 356 AHKMWTRL 363 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223 TP Y++ G H+P F V A G SK+ A+ AA ++ + Sbjct: 192 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 246 >gi|330982653|gb|EGH80756.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 176 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 50/147 (34%), Positives = 70/147 (47%), Gaps = 3/147 (2%) Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 +LS LV ET + +AR DL ++R+ S K SI AD +E+LI A+YLD Sbjct: 13 QLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAIYLD 72 Query: 130 GGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 G+E A V + +D KT LQE+ ++ P Y+V G H Sbjct: 73 AGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEPHCR 132 Query: 188 RFTVVVEISGL-APAQGMDCSKRAAEQ 213 F V EI+ L ++G S+R AEQ Sbjct: 133 TFFVECEINLLNEKSRGQGVSRRIAEQ 159 >gi|322787500|gb|EFZ13588.1| hypothetical protein SINV_13344 [Solenopsis invicta] Length = 1224 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/142 (11%), Positives = 38/142 (26%), Gaps = 4/142 (2%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE---SLIAALYLDGGIEVAGTFVDKY 142 + + + F S+ + + + + + Sbjct: 868 FRFKSIKVMRFQSWSARRKFTKIKKHRKQLERPTLPDGTKLITFPISSSSGSGNWNIADD 927 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAPA 201 QR K K+ + + ++ ++ VV I+ + Sbjct: 928 NGQRPAKHWIMNPSGKSYVCILHEYVQHALKKQPTYKFKELENAATPYSAVVCINDMEYG 987 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 G SK+ A+ AA + L+ Sbjct: 988 SGFGSSKKQAKANAARKTLEIL 1009 >gi|145539580|ref|XP_001455480.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124423288|emb|CAK88083.1| unnamed protein product [Paramecium tetraurelia] Length = 822 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 82/254 (32%), Gaps = 35/254 (13%) Query: 6 YSTLE-KRIGYAFANRSLLEKALT---------------HSSISHSYQES---YERLEFL 46 + L+ + I Y F N+ +L ++ + + +S S ++ LE + Sbjct: 570 LNYLQTEVIEYQFHNKYILYESFRVQGSNMDLDLPLELYYKFLLNSNTPSTRGHQMLELI 629 Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNS-------------LVSAETCSQVARELDL 93 GD +L I FN + + Q L Sbjct: 630 GDAVLECYIMCNCFNQIIFKFTPTNLYKIKMVLLSNSFLSKIAICYNIMHNFQDTAILQF 689 Query: 94 ASFIRVSSDLRKDVCS--FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 +++ + + + +D E+L+ A+++DGG + F+ K + + Sbjct: 690 IETVKLDEKFTYYNGNFVRVPKVLSDTFEALVGAIFMDGGWQPVCKFLKKVYLKFIPFVC 749 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 + D + + H + + + +F + I G + +R A Sbjct: 750 TYLNDIDDHVIDRVHQYSASKQGHMDIKSFKQE-NGQFCYEIRIDGQIVGRFTHEHERVA 808 Query: 212 EQVAAAEVLKREGI 225 ++ A K+ I Sbjct: 809 KEKACESACKKLKI 822 Score = 38.0 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 6/98 (6%) Query: 6 YSTLEKRIGYAFANRSL-LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 S IG +L +++A++ +S + +YE LE LGD IL L + + Sbjct: 353 ISEFANSIGIE---PNLRVQRAISRASYNRDI--NYELLETLGDSILKYLATVSVSLGPQ 407 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 + E LS + + +V+ + + Sbjct: 408 NTNENILSDQRSQIVNNNFIGKHLFKYQYFGLFHYVRS 445 >gi|15079052|ref|NP_149803.1| 340R [Invertebrate iridescent virus 6] gi|82012085|sp|Q91FI4|340R_IIV6 RecName: Full=DRBM domain-containing protein 340R gi|15042421|gb|AAK82201.1|AF303741_342 340R [Invertebrate iridescent virus 6] Length = 173 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 3/88 (3%) Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA--- 199 ++ + ++ L E+ H P Y ++GPDH P F + I Sbjct: 17 CTKKEQNIDMEKFNSIGFLNEFCHKNKYKPPSYTTLNQNGPDHSPTFNIECRIVDYKPNG 76 Query: 200 PAQGMDCSKRAAEQVAAAEVLKREGIWT 227 G S + A++ AA + +K + T Sbjct: 77 KFIGSGLSMKEAKKNAAFKTIKELNLLT 104 >gi|58268964|ref|XP_571638.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|134112802|ref|XP_774944.1| hypothetical protein CNBF1090 [Cryptococcus neoformans var. neoformans B-3501A] gi|50257592|gb|EAL20297.1| hypothetical protein CNBF1090 [Cryptococcus neoformans var. neoformans B-3501A] gi|57227873|gb|AAW44331.1| expressed protein [Cryptococcus neoformans var. neoformans JEC21] Length = 418 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 12/123 (9%) Query: 19 NRSLLEKALTHSSISHSYQES-----------YERLEFLGDRILGLLISTLLFNHFDSAK 67 +R LL + TH+S + ++S E+LE +GD +LG +++ LL + + + Sbjct: 155 DRELLRQVFTHTSYVGARKQSALFDKEAFHHDNEKLEHVGDALLGCIVTCLLHDLYPNLN 214 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 G + V +T SQ++R + + + ++ T A++ E+ +A L+ Sbjct: 215 PGNATEMKAICVCNQTLSQLSRRYKMPERLITDVNA-TEILKNGTKTTANIFEAYVAGLH 273 Query: 128 LDG 130 Sbjct: 274 YSY 276 >gi|312086019|ref|XP_003144912.1| hypothetical protein LOAG_09336 [Loa loa] gi|307759924|gb|EFO19158.1| hypothetical protein LOAG_09336 [Loa loa] Length = 637 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 27/72 (37%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 + L++ + + P+ P F + ++G +G+ SK+ A Sbjct: 201 PPYALHQLMLKQNRKKNPDLVYDEPQDISEAPNKPPMFKCTLTVNGTHKFEGIGQSKKTA 260 Query: 212 EQVAAAEVLKRE 223 + AA + L + Sbjct: 261 KSAAAEQALTKL 272 >gi|6730350|pdb|1DI2|A Chain A, Crystal Structure Of A Dsrna-Binding Domain Complexed With Dsrna: Molecular Basis Of Double-Stranded Rna-Protein Interactions gi|6730351|pdb|1DI2|B Chain B, Crystal Structure Of A Dsrna-Binding Domain Complexed With Dsrna: Molecular Basis Of Double-Stranded Rna-Protein Interactions Length = 69 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 LQE A K PEY V SGP H FT+ + G SK+ A++VA Sbjct: 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVE-TFVETGSGTSKQVAKRVA 59 Query: 216 AAEVLKREG 224 A ++L + Sbjct: 60 AEKLLTKFK 68 >gi|195115174|ref|XP_002002139.1| GI17218 [Drosophila mojavensis] gi|193912714|gb|EDW11581.1| GI17218 [Drosophila mojavensis] Length = 454 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE + P Y+ G H+ FT+ I G SK+ A+++A Sbjct: 239 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACTILNYHE-VGKGKSKKIAKRLA 297 Query: 216 AAEVLKRE 223 A ++ R Sbjct: 298 AHKMWTRL 305 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223 TP Y++ G H+P F V A G SK+ A+ AA ++ + Sbjct: 138 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 192 >gi|228469924|ref|ZP_04054860.1| ribonuclease III [Porphyromonas uenonis 60-3] gi|228308469|gb|EEK17267.1| ribonuclease III [Porphyromonas uenonis 60-3] Length = 91 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 2/82 (2%) Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 ++ + ++ K+EL EW ++ P HD F V I G + Sbjct: 1 YRDMREHTVASIQNYKSELIEWVQKHHLSHEFRLEEHQTMP-HD-HFIYSVWIDGKPVGR 58 Query: 203 GMDCSKRAAEQVAAAEVLKREG 224 G SK+ A+Q AA + L+ Sbjct: 59 GAGSSKKRAQQEAARDTLELLK 80 >gi|170574690|ref|XP_001892920.1| hypothetical protein, conserved [Brugia malayi] gi|158601296|gb|EDP38248.1| hypothetical protein, conserved [Brugia malayi] Length = 863 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 27/72 (37%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 + L++ + + P+ P F + I+G +G+ SK+ A Sbjct: 427 PPYALHQLMLKQNRKKNPDIVYDEPQDISQAPNKPPMFKCTLTINGTHKFEGIGQSKKTA 486 Query: 212 EQVAAAEVLKRE 223 + AA + L + Sbjct: 487 KSAAAEQALTKL 498 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 17/174 (9%), Positives = 44/174 (25%), Gaps = 12/174 (6%) Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 ++ ++ ++ VS + + + S + + S Sbjct: 46 RFYYPMMSLNNITKNKSNRVSGGVGTGYHNYQNHYPQQQHYSGTDPNTTGYYGSGFFTKH 105 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + + + G E + + + + + ++ + Sbjct: 106 QLQHSTVSSRGKRERSYGSFPRKNR-FDCGVDTTYAPPNKKSRTYSATGKTAAMILNELY 164 Query: 180 RSGPDHD----------PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D PRF + +K+AA+Q+A LK Sbjct: 165 PEFKDECSYRTLVVNKLPRFECSFVVQAKKFC-AEGSNKKAAKQLACELALKEL 217 >gi|156554944|ref|XP_001601978.1| PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] Length = 900 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E+ + P Y++ F GPDH F V+++G+ + +K+ A+ Sbjct: 827 KHPVSLLGEYCSKRKFGAPVYELCFECGPDHKKNFLFKVKVNGVEYKPAVASPNKKLAKA 886 Query: 214 VAAAEVLKREGIW 226 AA L+ G+ Sbjct: 887 EAAQVCLQSIGLL 899 >gi|307169155|gb|EFN61971.1| SON protein [Camponotus floridanus] Length = 883 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E+ K P Y++ F GPDH F V+++G+ + +K+ A+ Sbjct: 809 KHPVSLLGEYCSKKKLGAPVYELCFECGPDHRKNFLFKVKVNGIEYKPSVASPNKKQAKA 868 Query: 214 VAAAEVLKREGIW 226 AA L+ G+ Sbjct: 869 EAAQICLQSLGLL 881 >gi|93278802|pdb|2B7V|A Chain A, Structure Of Adar2 Dsrbm2 gi|310689630|pdb|2L2K|B Chain B, Solution Nmr Structure Of The RG STEM LOOP RNA-Adar2 Dsrbm2 Complex Length = 71 Score = 54.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y SG H F + V + G +G +K+ A+ AA L Sbjct: 19 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 63 >gi|307203953|gb|EFN82860.1| SON protein [Harpegnathos saltator] Length = 891 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E+ K P Y + F GPDH F V+++G+ + +K+ A+ Sbjct: 817 KHPVSLLGEYCSKKKLGAPVYDLCFECGPDHRKNFLFKVKVNGIEYKPSVASPNKKQAKA 876 Query: 214 VAAAEVLKREGIW 226 AA L+ G+ Sbjct: 877 EAAQICLQTLGLL 889 >gi|328705090|ref|XP_003242690.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A homolog A-like [Acyrthosiphon pisum] Length = 341 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 1/80 (1%) Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + + T LQ+ + + T +Y++ G P F V G A Sbjct: 1 MDCTAYNVKFDTDKTSVTLLQDVLNKQGVRTVQYELLQIEGAVSAPSFQYRVT-DGRFVA 59 Query: 202 QGMDCSKRAAEQVAAAEVLK 221 G SK+ A+Q AA +L+ Sbjct: 60 YGQGKSKKEAKQNAAKALLR 79 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 4/83 (4%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 + R+ LQE + P Y G H FTV +S G Sbjct: 108 FETMNFGDNDERNPIGMLQELCTSLHLPPPVYITECEDGLPHQRLFTVSCNVSEYKE-TG 166 Query: 204 MDCSKRAAEQVAAAE---VLKRE 223 + SK+ A+++AA +LK Sbjct: 167 VGKSKKIAKRLAANNLYLMLKSI 189 >gi|297624883|ref|YP_003706317.1| double-stranded RNA binding domain-containing protein [Truepera radiovictrix DSM 17093] gi|297166063|gb|ADI15774.1| double-stranded RNA binding domain protein [Truepera radiovictrix DSM 17093] Length = 157 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 21/35 (60%) Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH+PRF V I G +G +KR AE+ A+ Sbjct: 28 GPDHEPRFESEVLIQGEVYGRGEAGTKRDAERRAS 62 >gi|322786514|gb|EFZ12948.1| hypothetical protein SINV_03181 [Solenopsis invicta] Length = 289 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 78/234 (33%), Gaps = 21/234 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERL-------------EFL--GDRI 50 KR+ +F + LE+A TH S ++ + EF+ GD + Sbjct: 42 IYAFNKRLSESF-DMEKLEQAFTHRSYIIQEEQRQREMGIEDPTLAIQDNTEFVRKGDEL 100 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + + L +A E + + L+S E ++ A + I + + Sbjct: 101 TSQFVQSYLSQILPNASEDVIISLHDYLLSEEILAKAAFHIGTKDIILTEAMTQ----KT 156 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 + +V +L ++ ++ F+ ++ L L + + Sbjct: 157 LADTFLALVAALAESVDVNHAANFVKDFLIVILAEKDLLEIWKPTQPVEHLNDVLQKQNR 216 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 E ++ +G + + V + G + + A+ VAA +L R Sbjct: 217 SPVEPRLIGHTGQNTLLVVYHVAMYSDKEFLGSGFGQTIQEAKNVAALNILSRI 270 >gi|290983750|ref|XP_002674591.1| predicted protein [Naegleria gruberi] gi|284088182|gb|EFC41847.1| predicted protein [Naegleria gruberi] Length = 809 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 33/280 (11%), Positives = 85/280 (30%), Gaps = 65/280 (23%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------------------Y 36 L+ + Y F + L+++AL S +++ + Sbjct: 529 IEKLQDILHYRFRDVGLIQEALISCSYNNTFMDLRNVPMTEKIQKFLKKRNDSKIVGLYH 588 Query: 37 QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA--------------- 81 + E+L+ LG +L +++ ++ F A+ +L++ + ++S Sbjct: 589 LYNNEQLKLLGSALLKFMVTEFVYKRFTEAQPSKLTLLAHQIISKQGKVFSAIHEKFRFD 648 Query: 82 ----------------ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL--I 123 ++ L + + + + + ++ S Sbjct: 649 QFLMKTDIDADYSEIQQSYDCFTALLGAIFMDQDCLFYKFEFATISNTYTEELANSTDPC 708 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 ++ +L F + + + + V + ++ Sbjct: 709 SSYFLKRHDVTPDKFFYSFLFPYIEQFELSPYTIEPPKKHTLQHLIQVNHKSVPSYVKNQ 768 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR--AAEQVAAAEVLK 221 D F V + ++G ++G+ SK AE+ A LK Sbjct: 769 DVSQEFCVTIMVNGQEFSKGV-SSKSFAEAEEQAIEMGLK 807 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 71/177 (40%), Gaps = 12/177 (6%) Query: 14 GYAF-ANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 GY F + L+ A T S +H + YERLEF+GD ++ L L + Sbjct: 357 GYRFLKDPLLIRVAHTFPSYAHKMNFGRGHYERLEFMGDSVVNLTACVELIKSCRNDDSK 416 Query: 70 ELSVRFNSLV--SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127 + V + ++ ++ A +L ++ SSD F Q++V+ES+I ALY Sbjct: 417 KGDWNAGFTVLIANDSITREAEKLQISEHFLNSSD------KFSKKAQSNVIESIIGALY 470 Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + GI A +F + ++ ++ + + + + G D Sbjct: 471 MAEGIRGARSFAKELLIPTSIDFKCLKKFSSSFPSVSNEGEQWKRDVEHMKLFIGQD 527 >gi|307006603|gb|ADN23586.1| endonuclease [Hyalomma marginatum rufipes] Length = 195 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 4/112 (3%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFDS 65 E+ GY F ++S L +AL H + S + + + L+++GD +L +IS L H Sbjct: 23 ERLGGYQFKSKSTLLRALLHRTYKQSKRPNNKTFCDPLDYVGDYVLKFIISQYLLEHCAV 82 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 + +L+ R + E + +A + + + + D Sbjct: 83 KTKEQLAQRRALVECQEVYALLAVRNGFHEAVFIDDRRDWEHLNEYIKNVKD 134 >gi|148233972|ref|NP_001081675.1| adenosine deaminase, RNA-specific [Xenopus laevis] gi|1932813|gb|AAB51687.1| dsRNA adenosine deaminase [Xenopus laevis] Length = 1270 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 L K G E+++ + GP HDP+FT V+I + +K+ A+ Sbjct: 675 PCNKNPISLLMEHGQKSGNMCEFQLVSQEGPPHDPKFTYTVKIGNQTFPPVVANNKKMAK 734 Query: 213 QVAAAEVLKRE 223 +AA ++ Sbjct: 735 HLAAEAAVREL 745 Score = 38.4 bits (87), Expect = 0.87, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 26/89 (29%) Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +A + G+E + R K + ++ + Sbjct: 536 TADALAVTQEELGMEYPQAYEPVKEFSRLDKLLSCQEKNPVSGLLEFTHYCSQQCDFALL 595 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +SGP HDPRF + I G S Sbjct: 596 NQSGPSHDPRFKIQAVIDGRRFPVAEANS 624 >gi|7362760|emb|CAB83130.1| putative protein [Arabidopsis thaliana] Length = 345 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 31/98 (31%) Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + + + F + A A L + K + T S Sbjct: 37 RCNVTFCGQTFQSSEFFPTLKSAEHAAAKIAGIDVAYKNLLQEIAQKESSLLPFYATATS 96 Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 GP H P FT VE +G + +K+ AE AA Sbjct: 97 GPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVA 134 Score = 39.5 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219 R GP H PRF V G + ++AE AA Sbjct: 26 EREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAAAKIA 67 >gi|225451531|ref|XP_002275052.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296082307|emb|CBI21312.3| unnamed protein product [Vitis vinifera] Length = 481 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 23/49 (46%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T RSGP H P FT VE++G+ +K+ AE+ AA Sbjct: 106 YTTVRSGPGHVPVFTCTVELAGMNFTGESAKTKKQAEKNAAIAAWSALK 154 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVAL 65 >gi|213626233|gb|AAI70035.1| Unknown (protein for MGC:196762) [Xenopus laevis] Length = 1313 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 L K G E+++ + GP HDP+FT V+I + +K+ A+ Sbjct: 719 CNKNPISLLMEHGQKSGNMCEFQLVSQEGPPHDPKFTYTVKIGNQTFPPVVANNKKMAKH 778 Query: 214 VAAAEVLKRE 223 +AA ++ Sbjct: 779 LAAEAAVREL 788 Score = 38.4 bits (87), Expect = 0.87, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 26/89 (29%) Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +A + G+E + R K + ++ + Sbjct: 580 TADALAVTQEELGMEYPQAYEPVKEFSRLDKLLSCQEKNPVSGLLEFTHYCSQQCDFALL 639 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +SGP HDPRF + I G S Sbjct: 640 NQSGPSHDPRFKIQAVIDGRRFPVAEANS 668 >gi|195572230|ref|XP_002104099.1| GD18627 [Drosophila simulans] gi|194200026|gb|EDX13602.1| GD18627 [Drosophila simulans] Length = 899 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRA 210 + L E + P+YK+ GP ++ F VE++G +K+ Sbjct: 821 TQDKHPVCVLNELTSKNKWMPPQYKLREDIGPAYNRSFLFSVEVNGQTFTPDRGCNNKKE 880 Query: 211 AEQVAAAEVLKREGIW 226 A+ AAA L+ GI Sbjct: 881 AKLNAAALCLRALGIL 896 >gi|195330360|ref|XP_002031872.1| GM23818 [Drosophila sechellia] gi|194120815|gb|EDW42858.1| GM23818 [Drosophila sechellia] Length = 899 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRA 210 + L E + P+YK+ GP ++ F VE++G +K+ Sbjct: 821 TQDKHPVCVLNELTSKNKWMPPQYKLREDIGPAYNRSFLFSVEVNGQTFTPDRGCNNKKE 880 Query: 211 AEQVAAAEVLKREGIW 226 A+ AAA L+ GI Sbjct: 881 AKLNAAALCLRALGIL 896 >gi|147820257|emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera] Length = 552 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 23/49 (46%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T RSGP H P FT VE++G+ +K+ AE+ AA Sbjct: 177 YTTVRSGPGHVPVFTCTVELAGMNFTGESAKTKKQAEKNAAIAAWSALK 225 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 1/89 (1%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 + ++ D + + R GPDH PRF Sbjct: 48 DCFCPERQGTHANVGVREKTGEVDMFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKAS 107 Query: 193 VEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220 V +G + R AE AA L Sbjct: 108 VNFNGEIFESPSYCTTLRQAEHAAAEVAL 136 >gi|170063939|ref|XP_001867321.1| partner of drosha [Culex quinquefasciatus] gi|167881396|gb|EDS44779.1| partner of drosha [Culex quinquefasciatus] Length = 683 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/138 (10%), Positives = 33/138 (23%), Gaps = 1/138 (0%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 + + + F ++ + L + G + + Sbjct: 328 FRFKTIRVMRFKSWAARRKLTKHRKHLKNLQRPTLPDGTKLITFPVLHTEGEKGHAHARP 387 Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + + + P ++ V I+ L G Sbjct: 388 KKEWIMNPNGKSYVCILHEYVQHALRKQPSYEFKELENAATP-YSATVSINELKYGTGYG 446 Query: 206 CSKRAAEQVAAAEVLKRE 223 SK+ A+ AA E L+ Sbjct: 447 TSKKQAKSEAARETLEIL 464 >gi|47223534|emb|CAF98021.1| unnamed protein product [Tetraodon nigroviridis] Length = 687 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 2/182 (1%) Query: 43 LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102 + G+ + + + + L + + + F+++S Sbjct: 156 MNMAGNAAGMMGFRREVPSVVHAQLTYCLYSLMVEMAMKSKDFRYHYPVPKIFFVQLSVG 215 Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 + + T A ++ A L ++ ++ L Sbjct: 216 SYEFIGEGRTRQAARHSAAMKALQTLRNEPIPERP-PQNTEEKGESDDSSDASKSEISLV 274 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K + ++V SGP H F V + G A+G SK+ +++ AA +L+ Sbjct: 275 YEIALKRNLCVNFEVLKESGPPHMKSFLTRVTV-GEFSAEGEGNSKKLSKKRAAISILQD 333 Query: 223 EG 224 Sbjct: 334 LK 335 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 1/72 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L + P+YK+ GP H FTV + + + S + Sbjct: 1 MANPKEKTPMCLVNELARFNRIQPQYKLLSERGPAHAKIFTVQLALGEQVW-EAEGTSIK 59 Query: 210 AAEQVAAAEVLK 221 A+ AA L+ Sbjct: 60 KAQHSTAARALE 71 >gi|226498844|ref|NP_001146621.1| hypothetical protein LOC100280218 [Zea mays] gi|219888055|gb|ACL54402.1| unknown [Zea mays] gi|224029829|gb|ACN33990.1| unknown [Zea mays] Length = 289 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 T RSGP H P F VE++G A +K+ A++ AA LK+ Sbjct: 106 YTTIRSGPGHTPVFACTVELAGKAFTGNPGKTKKQAQKNAAMAAWSELKKL 156 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223 R GPDH PRF V +G + + R AE AA L Sbjct: 14 CFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAAAEVALNEL 68 >gi|302142076|emb|CBI19279.3| unnamed protein product [Vitis vinifera] Length = 415 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 27/79 (34%) Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 K+ + K LQE+A P Y P F+ VEI G+ Sbjct: 87 NMKECISQPVHETGLCKNLLQEYAQKMNYAIPMYVCQKDESPGRAASFSCTVEIGGIRYI 146 Query: 202 QGMDCSKRAAEQVAAAEVL 220 +K+ AE AA L Sbjct: 147 GAAARTKKEAEIKAARTAL 165 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLKRE 223 T + GP H P F V ++ + +++AAEQ AA L Sbjct: 34 YDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALVEL 82 >gi|225459069|ref|XP_002285663.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147781065|emb|CAN68128.1| hypothetical protein VITISV_043706 [Vitis vinifera] Length = 400 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 27/79 (34%) Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 K+ + K LQE+A P Y P F+ VEI G+ Sbjct: 87 NMKECISQPVHETGLCKNLLQEYAQKMNYAIPMYVCQKDESPGRAASFSCTVEIGGIRYI 146 Query: 202 QGMDCSKRAAEQVAAAEVL 220 +K+ AE AA L Sbjct: 147 GAAARTKKEAEIKAARTAL 165 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLKRE 223 T + GP H P F V ++ + +++AAEQ AA L Sbjct: 34 YDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALVEL 82 >gi|190690921|gb|ACE87235.1| protein kinase, interferon-inducible double stranded RNA dependent activator protein [synthetic construct] Length = 313 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 90 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H + + + G SK+ A++ AA + L + Sbjct: 150 EGGPAHKREYATICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 62 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100 >gi|134077181|emb|CAK45522.1| unnamed protein product [Aspergillus niger] Length = 371 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 80/256 (31%), Gaps = 37/256 (14%) Query: 2 SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + + + L R+ Y + L L ++L +S + + + E L LG +L S L Sbjct: 81 ESAKLAALHARL-YLPSRLPLETLARSLVDASADPNPKFNNESLATLGHDLLTHYTSEYL 139 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS------------------ 101 + + + V +T + +ARE + + Sbjct: 140 ICTYPRLPLTVIFAAMYAYVGPKTLAAMAREWGVEPHEDQTHWRKSITSSVVYDNEFGDP 199 Query: 102 -------------DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 D++ A V +++ A+YL G A F ++++ R L Sbjct: 200 VKGPKDPSEQSKQDVQNTQGVTAEQANATFVRAVMGAIYLHAGRPAAKRFFEQHFLSRHL 259 Query: 149 KSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMD 205 +L + P ++ +G P F V + +G Sbjct: 260 NISDLFNFSQPARDLARLCARENFEQPVARIISETGRKSRHPVFVVGIYSGQDKLGEGAG 319 Query: 206 CSKRAAEQVAAAEVLK 221 S A AA LK Sbjct: 320 ASLLEARSRAAVAALK 335 >gi|332002938|gb|AED90321.1| RNA polymerase II C-terminal domain phosphatase-like 2 [Arabidopsis thaliana] Length = 774 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 18/36 (50%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F+V V +G GM +K+ A Q AA L+ Sbjct: 685 QFSVEVLFTGEKIGIGMAKTKKDAHQQAAENALRSL 720 >gi|79503115|ref|NP_195747.2| CPL2; double-stranded RNA binding / phosphatase [Arabidopsis thaliana] gi|49175307|gb|AAT52023.1| C-terminal domain phosphatase-like 2 [Arabidopsis thaliana] gi|332002937|gb|AED90320.1| RNA polymerase II C-terminal domain phosphatase-like 2 [Arabidopsis thaliana] Length = 770 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 18/36 (50%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F+V V +G GM +K+ A Q AA L+ Sbjct: 685 QFSVEVLFTGEKIGIGMAKTKKDAHQQAAENALRSL 720 >gi|238055325|sp|Q5YDB5|CPL2_ARATH RecName: Full=RNA polymerase II C-terminal domain phosphatase-like 2; Short=FCP-like 2; AltName: Full=Carboxyl-terminal phosphatase-like 2; Short=AtCPL2; Short=CTD phosphatase-like 2 gi|6759450|emb|CAB69855.1| hypothetical protein [Arabidopsis thaliana] Length = 771 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 18/36 (50%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F+V V +G GM +K+ A Q AA L+ Sbjct: 686 QFSVEVLFTGEKIGIGMAKTKKDAHQQAAENALRSL 721 >gi|321456685|gb|EFX67786.1| hypothetical protein DAPPUDRAFT_115168 [Daphnia pulex] Length = 216 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 61/165 (36%), Gaps = 2/165 (1%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +E +GY F ++ L+ LTH S + E +RLE LGD++LG L+ + + Sbjct: 31 LAVIETTLGYEFRHKENLKLPLTHISTNPNKVPSEDSDRLETLGDKLLGTLVMAICYTTC 90 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + GEL+ + + +T + +A + + + + S Sbjct: 91 PTYGAGELTNLTSMITCNDTFAVLAECAGFKGIRETARPKWTPIPARIQSANNAERMDDT 150 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + + + V T + D + + +++ Sbjct: 151 ESSGIFHIVNVPTTAHSIQPSTSNYNAMLDEIDPLSTDESHVNSQ 195 >gi|156550835|ref|XP_001601132.1| PREDICTED: similar to RE14437p [Nasonia vitripennis] Length = 394 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + LQE ++ P+Y + G H+ +FT+V I G SK+ A++ Sbjct: 183 NNPIGSLQEMCMSRHWPPPKYSMEGEEGLPHERQFTIVCSILKYRQ-VGQGKSKKLAKRQ 241 Query: 215 AAAEVLKRE 223 AA ++ + Sbjct: 242 AAHKMWQSL 250 >gi|157129346|ref|XP_001655380.1| double-stranded binding protein, putative [Aedes aegypti] gi|108882115|gb|EAT46340.1| double-stranded binding protein, putative [Aedes aegypti] Length = 564 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/138 (10%), Positives = 32/138 (23%), Gaps = 1/138 (0%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 + + + F ++ + L + + + Sbjct: 218 FKFKTIRVMRFKSWAARRKLTKHRKHMKNLQRPTLPDGTKLITFPVLHTEVEKGTTHVRP 277 Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 + + + P ++ V I+ L G Sbjct: 278 KKEWIMNPNGKSYVCILHEYVQHALRKQPSYEFKELENAATP-YSATVSINELKYGTGYG 336 Query: 206 CSKRAAEQVAAAEVLKRE 223 SK+ A+ AA E L+ Sbjct: 337 TSKKQAKSEAARETLEIL 354 >gi|281205614|gb|EFA79803.1| hypothetical protein PPL_06622 [Polysphondylium pallidum PN500] Length = 1043 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 62/185 (33%), Gaps = 18/185 (9%) Query: 15 YAFANRSLLEKALTHSSISHSY----------------QESYERLEFLGDRILGLLISTL 58 N+ LL + TH SI+ + + +RLE+ GD IL I+ Sbjct: 662 ININNQRLLREVFTHPSINRNNTVPPRSLKVFKDYQLFKSDNQRLEYFGDSILKFCITYY 721 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L+ + +A EG L+ + + + S + + + +R+ +D + + Sbjct: 722 LYFLYPNAPEGFLTTKRSEVTSNTYLQNICDQTSIDDILRLGLSNTEDYKKPKADVIEAL 781 Query: 119 VESLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 ++ ++ E F + K +E Q+ + + Sbjct: 782 FAAVYLECGINVVYEFIINLLFKIENVVFPTYKCEHTNETPLSESQKSVLFNMNINIKDT 841 Query: 177 VTFRS 181 F+ Sbjct: 842 CLFQE 846 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 + L ++A+ + S + +Y+RLEFLGD + L++S L+++F +EG LS Sbjct: 835 NINIKDTCLFQEAM---NCSSDPKMNYQRLEFLGDSYIDLVVSEFLYHNFPREQEGFLSQ 891 Query: 74 RFNSLVSAETCSQVAREL 91 LV E + A L Sbjct: 892 TRALLVRNEKLANTANHL 909 Score = 44.9 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 190 TVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 V V G +G SK+ AE+ AA L+ Sbjct: 40 EVTVNFKGQRFTGEGKARSKKDAEKTAALNALQSI 74 >gi|156373222|ref|XP_001629432.1| predicted protein [Nematostella vectensis] gi|156216432|gb|EDO37369.1| predicted protein [Nematostella vectensis] Length = 313 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 15/36 (41%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 FT V I A G +K+ A++ AA L Sbjct: 125 FTCAVIIQDKLVATGEASNKKDAKRNAAENALDVLK 160 >gi|268325168|emb|CBH38756.1| conserved hypothetical protein, containing RNase3 and AIR carboxylase domain [uncultured archaeon] gi|268326276|emb|CBH39864.1| conserved hypothetical protein, containing RNase3 and AIR carboxylase domain [uncultured archaeon] Length = 421 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 7/132 (5%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLE------FLGDRILGLLISTLLFN 61 T+E+ I Y+F ++++L +ALT + + ++ + E LGD +L ++ LL Sbjct: 277 TIEENIRYSFLDKNILNRALTRKAYALEQRQRNQACEDQEIFRTLGDAVLKAVLVDLLIK 336 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +E + E+ +++ REL + I + +K + + A+ E+ Sbjct: 337 SGCKTREEITRKKIELE-REESLAKIGRELGIGESIMLGVGEKKQRANEEPYVLAETFEA 395 Query: 122 LIAALYLDGGIE 133 +I A+YLDG + Sbjct: 396 VIGAIYLDGCYD 407 >gi|326511242|dbj|BAJ87635.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 527 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 T RSG H P FT VE++G+ +K+ AE+ AA+ LK+ Sbjct: 106 YTTERSGLGHLPVFTCTVELAGITFTGDHAKNKKQAEKNAASAAWSSLKQL 156 >gi|226494720|ref|NP_001142144.1| hypothetical protein LOC100274309 [Zea mays] gi|194707342|gb|ACF87755.1| unknown [Zea mays] Length = 515 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKRE 223 T RSG H P FT VE++G+ +K+ AE+ AA+ LK+ Sbjct: 106 YTTERSGVGHLPVFTCTVELAGITFTGDHAKNKKQAEKNAASAAWSALKQL 156 >gi|170101206|ref|XP_001881820.1| predicted protein [Laccaria bicolor S238N-H82] gi|164643175|gb|EDR07428.1| predicted protein [Laccaria bicolor S238N-H82] Length = 157 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 29/105 (27%) Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 +S + + + Q S + A A F Sbjct: 17 AQSKLVSQQCRNYSQWNAPAKLSKENQEWPWSVETSALAAIYTLPSALHLFTGYLPQYAL 76 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SG H P +T + G G SKR A+ AA + + Sbjct: 77 TVSGTRHQPIWTCAASLDGQMIGLGEGRSKRVAQDEAARQAIINL 121 >gi|226506372|ref|NP_001150455.1| LOC100284085 [Zea mays] gi|195639400|gb|ACG39168.1| bcpLH protein [Zea mays] Length = 434 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220 T + GP H+P F V ++ S++AAEQ AA L Sbjct: 52 PTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSRKAAEQSAAEVAL 101 Score = 47.2 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 14/32 (43%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F VEI G+ +K+ AE AA L Sbjct: 155 FVCSVEIGGILYIGAAARTKKEAEIKAARTAL 186 >gi|73696282|gb|AAZ80928.1| nuclear RNase III Drosha [Macaca mulatta] Length = 174 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILG 52 + + E+ IG F + LL +A T + +H +R+EFLGD I+ Sbjct: 120 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQ 169 >gi|170051377|ref|XP_001861735.1| ribonuclease iii [Culex quinquefasciatus] gi|167872672|gb|EDS36055.1| ribonuclease iii [Culex quinquefasciatus] Length = 217 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V +GP + +T+ V G A S + A+ AA + L+ Sbjct: 104 KRSATCVIECNGPTNTRVYTMAVYFRGKHLACSNGHSIQEAKINAAKQALEN 155 >gi|170051370|ref|XP_001861732.1| ribonuclease iii [Culex quinquefasciatus] gi|167872669|gb|EDS36052.1| ribonuclease iii [Culex quinquefasciatus] Length = 186 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V +GP + +T+ V G A S + A+ AA + L+ Sbjct: 73 KRSATCVIECNGPTNTRVYTMAVYFRGKHLACSNGHSIQEAKINAAKQALEN 124 >gi|292609374|ref|XP_694356.4| PREDICTED: hypothetical protein LOC565999 [Danio rerio] Length = 1079 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213 + + L E + K PE+ + SGPDH F V ++G Q +K+ A+ Sbjct: 988 KHPVSALMEMCNKKKWPQPEFVMVHHSGPDHRKNFLFKVVVNGSDYQPQSASPNKKHAKA 1047 Query: 214 VAAAEVLKREG 224 +AA L+ G Sbjct: 1048 MAATVALQAMG 1058 >gi|168021275|ref|XP_001763167.1| dsRNA-specific nuclease dicer and related ribonuclease [Physcomitrella patens subsp. patens] gi|162685650|gb|EDQ72044.1| dsRNA-specific nuclease dicer and related ribonuclease [Physcomitrella patens subsp. patens] Length = 961 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 78/245 (31%), Gaps = 42/245 (17%) Query: 20 RSLLE---KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + L ALT +S ++ SYER E L D L ++S LF F S EG+L+ Sbjct: 503 KRLYVDSVLALTAASCQETF--SYERAELLSDAYLEWVVSHRLFLKFPSKHEGQLTRMRQ 560 Query: 77 SLVSAETCSQVARELDLASFIR---------------------------VSSDLRKDVCS 109 +VS Q A E L S+I+ + + +V Sbjct: 561 KIVSNSVLYQHALEKGLQSYIQADRFAPSRWAAPGVPPAFDEDLRDGDDSDKESKPEVER 620 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR-----ALKSGKFRRDAKTELQEW 164 + I + + AA+ + VA + + + + Sbjct: 621 EVVEIVGRLTDLRAAAVNNENFARVAVKHSYHLHLRHGSTALETQVFEPLLQPMVSPETL 680 Query: 165 AHAKFGVTPEYKVTFRSGPDH-----DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 E G ++ + TV V + G+ K+ A+++ A Sbjct: 681 PIHPVRGLQERCQQEAEGLEYKVSRAESVATVEVYVDGVQIGSTQSAQKKMAQKLGARNA 740 Query: 220 LKREG 224 L + Sbjct: 741 LVKLK 745 >gi|208690885|gb|ACI31218.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Erythrocebus patas] Length = 550 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V + + GP+ F +I + G +K+ A+Q+AA L Sbjct: 116 VNYKQCTSGVHGPEG---FHYKCKIGEKEYSIGTGSTKQEAKQLAAKLAL 162 >gi|208690873|gb|ACI31212.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Chlorocebus aethiops] Length = 550 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V + + GP+ F +I + G +K+ A+Q+AA L Sbjct: 116 VNYKQCTSGVHGPEG---FHYKCKIGEKEYSIGTGSTKQEAKQLAAKLAL 162 >gi|54289574|gb|AAV32090.1| interferon-induced dsRNA-dependent protein kinase [Chlorocebus aethiops] Length = 550 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V + + GP+ F +I + G +K+ A+Q+AA L Sbjct: 116 VNYKQCTSGVHGPEG---FHYKCKIGEKEYSIGTGSTKQEAKQLAAKLAL 162 >gi|332022933|gb|EGI63201.1| Microprocessor complex subunit DGCR8 [Acromyrmex echinatior] Length = 650 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/143 (10%), Positives = 35/143 (24%), Gaps = 6/143 (4%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVV-----ESLIAALYLDGGIEVAGTFVD 140 + + + F S+ + + + + G + D Sbjct: 294 FRFKSIKVMRFQSWSARRKFTKIKKHRKQLERPTLPDGTKLITFPVSSSSGSGSSHIVDD 353 Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + + P ++ VV I+ + Sbjct: 354 NGQRPAKHWIMNPSGKSYVCILHEYVQHALKKQPTYKFKELENAATP-YSAVVCINDMEY 412 Query: 201 AQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ A+ AA + L+ Sbjct: 413 GSGFGSSKKQAKANAARKTLEIL 435 >gi|242081359|ref|XP_002445448.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor] gi|241941798|gb|EES14943.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor] Length = 298 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 P G H P+F VE+ G + G K+ AEQ AA + Sbjct: 60 YKKPPVYKVESEGASHQPKFRCTVEVGGQQFSSAGSFDRKKEAEQDAARIAYEIL 114 Score = 43.8 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 16/35 (45%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F +V G + +K+ AEQ AA V+K Sbjct: 166 FAAIVVFDGNSYTGESARNKKDAEQNAARAVIKSI 200 >gi|189236536|ref|XP_975506.2| PREDICTED: similar to neuron-specific staufen [Tribolium castaneum] Length = 425 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + V SG H F ++ +G SK+ +++VAA ++L+ Sbjct: 249 FNVISESGKPHQRNFVTECKLGDYV-TEGEGRSKKESKRVAAEKMLQ 294 Score = 39.1 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 9/70 (12%), Positives = 17/70 (24%), Gaps = 1/70 (1%) Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + K + Y + GP H F V + + Sbjct: 1 MFSSESQNNVTKTPEKNIVATIYELAQFNEIECSYTLISEEGPPHAKIFKVSLHLGDELY 60 Query: 201 AQGMDCSKRA 210 +G S + Sbjct: 61 -EGSGSSLKK 69 >gi|270006021|gb|EFA02469.1| hypothetical protein TcasGA2_TC008157 [Tribolium castaneum] Length = 480 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + V SG H F ++ +G SK+ +++VAA ++L+ Sbjct: 249 FNVISESGKPHQRNFVTECKLGDYV-TEGEGRSKKESKRVAAEKMLQ 294 Score = 39.1 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 9/70 (12%), Positives = 17/70 (24%), Gaps = 1/70 (1%) Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + K + Y + GP H F V + + Sbjct: 1 MFSSESQNNVTKTPEKNIVATIYELAQFNEIECSYTLISEEGPPHAKIFKVSLHLGDELY 60 Query: 201 AQGMDCSKRA 210 +G S + Sbjct: 61 -EGSGSSLKK 69 >gi|308081633|ref|NP_001183890.1| hypothetical protein LOC100502483 [Zea mays] gi|238015288|gb|ACR38679.1| unknown [Zea mays] Length = 520 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKRE 223 T RSG H P FT VE++G+ A +K+ AE+ AA+ LK+ Sbjct: 106 YTTERSGLGHLPVFTCTVELAGITFAGDPAKNKKQAEKNAASAAWSALKQL 156 >gi|168048373|ref|XP_001776641.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] gi|162671933|gb|EDQ58477.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] Length = 1053 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 30/81 (37%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 + L + + GV+ T RSGP H P FT VE++ + + Sbjct: 330 WEEQGMRVWDETGVCKNLLQETAQRAGVSLPVYATTRSGPGHLPVFTCTVEVASMTFSGE 389 Query: 204 MDCSKRAAEQVAAAEVLKREG 224 +K+ AE+ AA Sbjct: 390 AAKTKKQAEKNAAMAAWSALK 410 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 21/77 (27%), Gaps = 1/77 (1%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDC 206 + + + R GPDH PRF V +G Sbjct: 221 WCGERVVAGMYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCN 280 Query: 207 SKRAAEQVAAAEVLKRE 223 + R AE AA L Sbjct: 281 TLRQAEHAAAEVALNTL 297 >gi|258571479|ref|XP_002544543.1| predicted protein [Uncinocarpus reesii 1704] gi|237904813|gb|EEP79214.1| predicted protein [Uncinocarpus reesii 1704] Length = 387 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 75/208 (36%), Gaps = 17/208 (8%) Query: 17 FANRSLLEKALTH-----SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 +++L TH + + SY+RLE LGD L ++ + L+++ F S G + Sbjct: 131 IKDKTLETAVFTHQGEIPAHAPPAIHHSYDRLEILGDAYLEVIATRLIWDRFQSLPPGRI 190 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 S LV ET +Q + +RVS ++R ++ DV E+ AA+ L Sbjct: 191 SQIRELLVKNETLAQFSERFKFDQLVRVSPEIRSQ-PKRWVKVKGDVFEAYAAAVILSDP 249 Query: 132 IEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-- 187 I D + + A + A G + + S P Sbjct: 250 INGFNLVEDWLVRLWGPILDRVQPEDQATHHKESLAKRVMGKGVKLRYIDESPPITRKGG 309 Query: 188 --RFTVVVEISG-----LAPAQGMDCSK 208 F + V ++G G +K Sbjct: 310 MATFFIGVYLTGWGWESQHLGSGTGLNK 337 >gi|195108545|ref|XP_001998853.1| GI23404 [Drosophila mojavensis] gi|193915447|gb|EDW14314.1| GI23404 [Drosophila mojavensis] Length = 655 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 36/138 (26%), Gaps = 1/138 (0%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 +E+ + F ++ + L + +G+ + Sbjct: 311 FRFKEIRVLRFRSWNARRKFTKNRKHIKNIQRPTLPDGTKLIKFPILAASGSEGSTNSRG 370 Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 R + + T P ++ V ++ L G Sbjct: 371 RKEWIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVNNLKYGTGYG 429 Query: 206 CSKRAAEQVAAAEVLKRE 223 SK+ A+ AA E L+ Sbjct: 430 TSKKQAKSEAARETLEIL 447 >gi|156373220|ref|XP_001629431.1| predicted protein [Nematostella vectensis] gi|156216431|gb|EDO37368.1| predicted protein [Nematostella vectensis] Length = 221 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 15/36 (41%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 FT V I A G +K+ A++ AA L Sbjct: 125 FTCAVIIQDKLVATGEASNKKDAKRNAAENALDVLK 160 >gi|195390456|ref|XP_002053884.1| GJ23095 [Drosophila virilis] gi|194151970|gb|EDW67404.1| GJ23095 [Drosophila virilis] Length = 659 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 1/138 (0%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 + + + F ++ + L + +G + Sbjct: 315 FRFKVIRVLRFRSWNARRKFTKNRKHIKNIQRPTLPDGTKLIKFPILAASGAEGATNPRG 374 Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 R + + T P ++ V ++ L G Sbjct: 375 RKEWIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVNNLKYGTGYG 433 Query: 206 CSKRAAEQVAAAEVLKRE 223 SK+ A+ AA E L+ Sbjct: 434 TSKKQAKSEAARETLEIL 451 >gi|224143644|ref|XP_002336064.1| predicted protein [Populus trichocarpa] gi|222869865|gb|EEF06996.1| predicted protein [Populus trichocarpa] Length = 61 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 19/44 (43%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T +SG H P F VEI G+ +K+ AE AA Sbjct: 12 YFTEKSGEAHAPTFISTVEIDGVIFTGKEARTKKQAEMSAAKTA 55 >gi|294937286|ref|XP_002782038.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239893277|gb|EER13833.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 452 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Query: 14 GYAFA-NRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 GY F + LL +A TH+S++ S S ERLE++GD +LG ++ + L+ + + Sbjct: 253 GYEFRRHPWLLMEAFTHASVAAVSPSYSNERLEWIGDAVLGAVVWSKLYEEGRATLSSFI 312 Query: 72 SVRFNSL 78 N Sbjct: 313 DYTCNFH 319 >gi|294881178|ref|XP_002769283.1| hypothetical protein Pmar_PMAR007697 [Perkinsus marinus ATCC 50983] gi|239872561|gb|EER02001.1| hypothetical protein Pmar_PMAR007697 [Perkinsus marinus ATCC 50983] Length = 798 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Query: 14 GYAFA-NRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 GY F + LL +A TH+S++ S S ERLE++GD +LG ++ + L+ + + Sbjct: 560 GYEFRRHPWLLMEAFTHASVAAVSPSYSNERLEWIGDAVLGAVVWSKLYEEGRATLSSFI 619 Query: 72 SVRFNSL 78 N Sbjct: 620 DYTCNFH 626 >gi|87117463|gb|ABD20025.1| Rnc [Shigella dysenteriae] Length = 178 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 3/162 (1%) Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +I+ L++ F EG++S +LV T +++ARE +L +R+ K Sbjct: 1 SYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60 Query: 112 TSIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 SI AD VE+LI ++LD I+ + + G ++D KT LQE+ + Sbjct: 61 ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 LPLPTYMVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162 >gi|320545024|ref|NP_001188796.1| loquacious, isoform D [Drosophila melanogaster] gi|318068436|gb|ADV37046.1| loquacious, isoform D [Drosophila melanogaster] Length = 359 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE + P Y+ G H+ FT+ I G SK+ A+++A Sbjct: 250 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLA 308 Query: 216 AAEVLKRE 223 A + R Sbjct: 309 AHRMWMRL 316 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223 TP Y++ G H+P F V A G SK+ A+ AA ++ + Sbjct: 150 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 204 >gi|195472607|ref|XP_002088591.1| GE18652 [Drosophila yakuba] gi|194174692|gb|EDW88303.1| GE18652 [Drosophila yakuba] Length = 465 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE + P Y+ G H+ FT+ I G SK+ A+++A Sbjct: 250 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLA 308 Query: 216 AAEVLKRE 223 A + R Sbjct: 309 AHRMWMRL 316 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223 TP Y++ G H+P F V A G SK+ A+ AA ++ + Sbjct: 150 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 204 >gi|194860648|ref|XP_001969628.1| GG23848 [Drosophila erecta] gi|190661495|gb|EDV58687.1| GG23848 [Drosophila erecta] Length = 464 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE + P Y+ G H+ FT+ I G SK+ A+++A Sbjct: 249 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLA 307 Query: 216 AAEVLKRE 223 A + R Sbjct: 308 AHRMWMRL 315 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223 TP Y++ G H+P F V A G SK+ A+ AA ++ + Sbjct: 149 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 203 >gi|85724940|ref|NP_001033903.1| loquacious, isoform C [Drosophila melanogaster] gi|63376297|gb|AAY40789.1| loquacious [Drosophila melanogaster] gi|84795302|gb|ABC65897.1| loquacious, isoform C [Drosophila melanogaster] Length = 383 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE + P Y+ G H+ FT+ I G SK+ A+++A Sbjct: 250 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLA 308 Query: 216 AAEVLKRE 223 A + R Sbjct: 309 AHRMWMRL 316 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223 TP Y++ G H+P F V A G SK+ A+ AA ++ + Sbjct: 150 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 204 >gi|19921250|ref|NP_609646.1| loquacious, isoform B [Drosophila melanogaster] gi|17945270|gb|AAL48692.1| RE14437p [Drosophila melanogaster] gi|22946404|gb|AAF53295.2| loquacious, isoform B [Drosophila melanogaster] gi|71733132|gb|AAZ40191.1| R3D1-L [Drosophila melanogaster] gi|220947980|gb|ACL86533.1| loqs-PB [synthetic construct] gi|220957210|gb|ACL91148.1| loqs-PB [synthetic construct] Length = 465 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE + P Y+ G H+ FT+ I G SK+ A+++A Sbjct: 250 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLA 308 Query: 216 AAEVLKRE 223 A + R Sbjct: 309 AHRMWMRL 316 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223 TP Y++ G H+P F V A G SK+ A+ AA ++ + Sbjct: 150 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 204 >gi|24584110|ref|NP_723813.1| loquacious, isoform A [Drosophila melanogaster] gi|7298056|gb|AAF53296.1| loquacious, isoform A [Drosophila melanogaster] gi|71733134|gb|AAZ40192.1| R3D1-S [Drosophila melanogaster] Length = 419 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE + P Y+ G H+ FT+ I G SK+ A+++A Sbjct: 250 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLA 308 Query: 216 AAEVLKRE 223 A + R Sbjct: 309 AHRMWMRL 316 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223 TP Y++ G H+P F V A G SK+ A+ AA ++ + Sbjct: 150 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 204 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 22/187 (11%), Positives = 47/187 (25%), Gaps = 6/187 (3%) Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 GD + G L + E+ L + Sbjct: 231 GDGNANATGGGDASDKTVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSIL 290 Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQ 162 M ++ + +AA + ++ D + + + + ++ Sbjct: 291 NYREMGKGKSKKIAKRLAAHRMWMRLQETPIDSGKISDSICGELEGEKTCLKNNKIDYIK 350 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA--QGMDCSKRAAEQVAAAEVL 220 E +F +V++S L G + A++ AA L Sbjct: 351 LLGEIATENQFEVTYVDIEEKTFSGQFQCLVQLSTLPVGVCHGSGPTAADAQRHAAQNAL 410 Query: 221 KREGIWT 227 + I T Sbjct: 411 EYLKIMT 417 >gi|321461921|gb|EFX72948.1| hypothetical protein DAPPUDRAFT_253785 [Daphnia pulex] Length = 222 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 8/56 (14%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE------QVAAAEVLKR-EGIW 226 G H FT V I +G SK+ AE AA L+ EG+W Sbjct: 140 VKEEGSPHLLIFTARVVIGDQPF-EGTGSSKKQAEEAESKKNEAAQAALQSTEGVW 194 Score = 43.8 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + SGP H + V ++G D +K+ A+ A +L Sbjct: 7 KPNIFYDIAASGPPHARIYVASVTLNGKTY-SAKDTTKKTAKAKVARMIL 55 >gi|312220987|emb|CBY00928.1| hypothetical protein [Leptosphaeria maculans] Length = 495 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 66/216 (30%), Gaps = 29/216 (13%) Query: 19 NRSLLEKA-LTHSSISHSYQE-----------SYERLEFLGDRILGLLISTLLFNHFDSA 66 N L +A TH S + + YERLE+ GD + L+ + L N F Sbjct: 151 NEPHLHQAVFTHRSAVINPGDLVAMSKLDLGLDYERLEYSGDAYIELIATRALCNRFPQV 210 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 EL LV T S+ + + + + AD+ E+ IA L Sbjct: 211 DVPELCSWRERLVENSTLSKFSDAYGFPDRLSHRLFVE-RGSKAWMKVSADIFEAYIAGL 269 Query: 127 YLDGGIEVAGTFVDKYWKQRALK---------SGKFRRDAKTELQEWAHAKFGVTPEYKV 177 + + A + +D ++L + + Sbjct: 270 VESDPEHGFHIAEEWLTELWAPQLLSFQAKVIENPKAKDELSKLVMCKGVTLQYREDKPM 329 Query: 178 TFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSK 208 TF +G R+ + + + G +K Sbjct: 330 TFDTGSI--QRYYIGIYLTGWGYEDEWIGSGEGQNK 363 >gi|75858914|ref|XP_868797.1| hypothetical protein AN9415.2 [Aspergillus nidulans FGSC A4] gi|40747690|gb|EAA66846.1| hypothetical protein AN9415.2 [Aspergillus nidulans FGSC A4] Length = 1073 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 + L TH ++ + +Y+RLE LGD + L+ + L++N F G +S Sbjct: 115 IKDDRLERAVFTHPGVAKDSRTTYDRLEILGDAYIELISTKLIWNKFQHIPSGRISQIRE 174 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 LV ET ++ A + + + + D+ E+ +AA+ L + Sbjct: 175 LLVKNETLAEYATQYGIDK-KASVPAELYNQPKRWIKTKGDIFEAYVAAVILSHPDGYSV 233 Query: 137 TFVD 140 Sbjct: 234 AETW 237 >gi|325120999|ref|NP_001191404.1| staufen [Aplysia californica] gi|37728097|gb|AAO38741.1| staufen [Aplysia californica] Length = 618 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + A+ P Y + G F V VE+ G +K+ A++ A Sbjct: 358 NPISRLIQIMQAQKKKEPVYTLVTERGLPRRREFIVQVEVEDKT-CPGSGPNKKLAKRAA 416 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 417 AEAMLQLLG 425 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 1/90 (1%) Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 Y + G + + ++ ++ P + F V + Sbjct: 125 EPQQPPYYHQPNMDFRGLYNQRYHQYMRASRDPRYRGNGVLWPLRYHYPRMNRAFYVSLR 184 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + G G +++AA AA + L+ Sbjct: 185 V-GHREFIGDGPTRQAARHNAAQKALRILK 213 >gi|325296829|ref|NP_001191656.1| neuron-specific staufen [Aplysia californica] gi|59323978|gb|AAW84263.1| neuron-specific staufen [Aplysia californica] Length = 950 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + L + A+ P Y + G F V VE+ G +K+ A++ A Sbjct: 690 NPISRLIQIMQAQKKKEPVYTLVTERGLPRRREFIVQVEVEDKT-CPGSGPNKKLAKRAA 748 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 749 AEAMLQLLG 757 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 1/90 (1%) Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 Y + G + + ++ ++ P + F V + Sbjct: 457 EPQQPPYYHQPNMDFRGLYNQRYHQYMRASRDPRYRGNGVLWPLRYHYPRMNRAFYVSLR 516 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + G G +++AA AA + L+ Sbjct: 517 V-GHREFIGDGPTRQAARHNAAQKALRILK 545 >gi|288804124|gb|ADC53790.1| dsRNA-binding interferon resistance protein [Pseudocowpox virus] Length = 182 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 20/54 (37%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH P FT + +SG A SK+ A A L Sbjct: 118 MITHRHLEFCETRSGGQDHCPNFTCTIMVSGKVIATADGTSKKMARHAACVAAL 171 >gi|218283083|ref|ZP_03489178.1| hypothetical protein EUBIFOR_01764 [Eubacterium biforme DSM 3989] gi|218216152|gb|EEC89690.1| hypothetical protein EUBIFOR_01764 [Eubacterium biforme DSM 3989] Length = 81 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Query: 14 GYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62 GY + N + +A THSS ++ + + ERLEF+GD +L + +T LF + Sbjct: 12 GYKYKNEDIYLEACTHSSYANEHHRQMDDNERLEFMGDSVLQIWSATQLFFN 63 >gi|255543655|ref|XP_002512890.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223547901|gb|EEF49393.1| double-stranded RNA binding protein, putative [Ricinus communis] Length = 477 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKRE 223 T RSGP H P FT VE++G+ +K+ AE+ AA LKR Sbjct: 109 YTTIRSGPGHVPTFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 159 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 21/68 (30%), Gaps = 1/68 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAE 212 D + + R GPDH PRF V +G + R AE Sbjct: 1 MADMFKNQLQELAQRSCFNLPSYACVREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAE 60 Query: 213 QVAAAEVL 220 AA L Sbjct: 61 HAAAEVAL 68 >gi|238480134|ref|NP_001154686.1| DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4); double-stranded RNA binding / protein binding [Arabidopsis thaliana] gi|197267565|dbj|BAG69145.1| dsRNA-binding protein [Arabidopsis thaliana] gi|332646874|gb|AEE80395.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana] Length = 329 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 21/46 (45%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + T SGP H P FT VE +G + +K+ AE AA Sbjct: 99 PFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVA 144 Score = 39.5 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219 R GP H PRF V G + ++AE AA Sbjct: 26 EREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAAAKIA 67 >gi|22331912|ref|NP_191839.2| DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4); double-stranded RNA binding / protein binding [Arabidopsis thaliana] gi|42572769|ref|NP_974480.1| DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4); double-stranded RNA binding / protein binding [Arabidopsis thaliana] gi|75244610|sp|Q8H1D4|DRB4_ARATH RecName: Full=Double-stranded RNA-binding protein 4; AltName: Full=dsRNA-binding protein 4; Short=AtDRB4 gi|23297784|gb|AAN13025.1| unknown protein [Arabidopsis thaliana] gi|332646872|gb|AEE80393.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana] gi|332646873|gb|AEE80394.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana] Length = 355 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 21/46 (45%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + T SGP H P FT VE +G + +K+ AE AA Sbjct: 99 PFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVA 144 Score = 39.5 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219 R GP H PRF V G + ++AE AA Sbjct: 26 EREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAAAKIA 67 >gi|18389232|gb|AAL67059.1| unknown protein [Arabidopsis thaliana] Length = 355 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 21/46 (45%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + T SGP H P FT VE +G + +K+ AE AA Sbjct: 99 PFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVA 144 Score = 39.5 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219 R GP H PRF V G + ++AE AA Sbjct: 26 EREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAAAKIA 67 >gi|241600828|ref|XP_002405209.1| ATP-dependent RNA helicase, putative [Ixodes scapularis] gi|215502478|gb|EEC11972.1| ATP-dependent RNA helicase, putative [Ixodes scapularis] Length = 1095 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 1/58 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 +GP H RF V + G G +K+ A+ AA + L+ Sbjct: 13 CGKNKVTPQYEFKNTGPRHRQRFLCEVRVEGYDYVGAGNSTNKKDAQTNAARDFLQYL 70 >gi|325073735|gb|ADY76788.1| PP120 [Orf virus] Length = 183 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 22/54 (40%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH PRFT + ISG A SK+ A A A L Sbjct: 119 MMTHRPLEFCETRSGGEDHCPRFTCTITISGKVVAAANGASKKLARHAACASAL 172 >gi|82582943|gb|ABB84397.1| interferon resistance protein [Orf virus] Length = 166 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 22/54 (40%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH PRFT + ISG A SK+ A A A L Sbjct: 102 MMTHRPLEFCETRSGGEDHCPRFTCTITISGKVVAAANGASKKLARHAACASAL 155 >gi|82582925|gb|ABB84388.1| interferon resistance protein [Orf virus] gi|82582927|gb|ABB84389.1| interferon resistance protein [Orf virus] Length = 166 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 22/54 (40%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH PRFT + ISG A SK+ A A A L Sbjct: 102 MMTHRPLEFCETRSGGEDHCPRFTCTITISGKVVAAANGASKKLARHAACASAL 155 >gi|82582941|gb|ABB84396.1| interferon resistance protein [Orf virus] Length = 166 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 22/54 (40%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH PRFT + ISG A SK+ A A A L Sbjct: 102 MMTHRPLEFCETRSGGEDHCPRFTCTITISGKVVAAANGASKKLARHAACASAL 155 >gi|2415555|emb|CAA04303.1| ribonuclease III [Campylobacter jejuni] Length = 73 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 YAF + + ALTH S SY + ERL +GD +L L++ LF++ + Sbjct: 1 YAFPDTNHFIPALTHKSFKKSY--NNERLVLIGDAVLDLVVGEYLFHNIRQRCRRRFILS 58 Query: 75 FNSLVSAE 82 +V E Sbjct: 59 LEQVVVNE 66 >gi|195578966|ref|XP_002079333.1| loquacious [Drosophila simulans] gi|194191342|gb|EDX04918.1| loquacious [Drosophila simulans] Length = 464 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE + P Y+ G H+ FT+ I G SK+ A+++A Sbjct: 249 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLA 307 Query: 216 AAEVLKRE 223 A + R Sbjct: 308 AHRMWVRL 315 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223 TP Y++ G H+P F V A G SK+ A+ AA ++ + Sbjct: 149 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 203 >gi|195351293|ref|XP_002042169.1| GM10477 [Drosophila sechellia] gi|194123993|gb|EDW46036.1| GM10477 [Drosophila sechellia] Length = 464 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE + P Y+ G H+ FT+ I G SK+ A+++A Sbjct: 249 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLA 307 Query: 216 AAEVLKRE 223 A + R Sbjct: 308 AHRMWVRL 315 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223 TP Y++ G H+P F V A G SK+ A+ AA ++ + Sbjct: 149 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 203 >gi|194765827|ref|XP_001965027.1| GF23153 [Drosophila ananassae] gi|190617637|gb|EDV33161.1| GF23153 [Drosophila ananassae] Length = 472 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE + P Y+ G H+ FT+ I G SK+ A+++A Sbjct: 257 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLA 315 Query: 216 AAEVLKRE 223 A + R Sbjct: 316 AHRMWVRL 323 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223 TP Y++ G H+P F V A G SK+ A+ AA ++ + Sbjct: 154 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 208 >gi|33415077|gb|AAQ18046.1| double-stranded RNA-binding protein [Bovine papular stomatitis virus] Length = 182 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 21/54 (38%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH P FT + +SG A SK+ A A A L Sbjct: 118 MITHRPLEFCETRSGGQDHCPNFTCTIMVSGKVIATADGTSKKMARHAACATAL 171 >gi|312379836|gb|EFR25996.1| hypothetical protein AND_08191 [Anopheles darlingi] Length = 1167 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + L + ++ ++V GP H F ++ G +G K+ +++ A Sbjct: 733 KSPISLVHEMAVQRQLSVVFEVISEKGPPHMTVFVTQCKV-GTIVTEGEGTGKKLSKKRA 791 Query: 216 AAEVLKRE 223 A ++L++ Sbjct: 792 AEKMLEQL 799 Score = 51.5 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 + L + +Y++T +GP H RFTV +++ S + A Sbjct: 344 NMKEKTTMCLVNELARYNKIQHQYRLTGETGPAHSKRFTVTLKLGDEEYTS-EGASIKKA 402 Query: 212 EQVAAAEVL 220 + AA + + Sbjct: 403 QHKAAGDAI 411 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + L + A+ P Y + P +FT+ V +G A G+ +K+AA+ Sbjct: 877 ENPISRLMQIQQARKEKQPVYALVEGDRPTTGRRKQFTIEVTAAGKR-AVGVGMTKKAAK 935 Query: 213 QVAAAEVLKREG 224 AA +L G Sbjct: 936 WTAAEALLIELG 947 >gi|87117496|gb|ABD20047.1| Rnc [Shigella dysenteriae] Length = 178 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 3/162 (1%) Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +I+ L++ F EG++S +LV T +++ARE +L +R+ K Sbjct: 1 SYVIANALYHRFPCVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60 Query: 112 TSIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 SI AD VE+LI ++LD I+ + + G ++D KT LQE+ + Sbjct: 61 ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162 >gi|327291984|ref|XP_003230700.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like, partial [Anolis carolinensis] Length = 404 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%) Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 E+++ + GP HDP+F V+I + SK+ A+Q+AA ++ Sbjct: 99 CEFQLLAQDGPPHDPKFKYCVKIGDQVFPAVVSNSKKGAKQMAAEAAIRGL 149 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++GP HDP+F ++ G SK+ +Q AA L+ Sbjct: 214 IEQTGPPHDPKFVFQAKVGGRWFPAVTAHSKKQGKQEAADAALRVL 259 Score = 39.5 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 14/35 (40%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F I G SK+ A+Q AAA ++ Sbjct: 1 FKFQAVIDGRRFPPAEAGSKKLAKQEAAAHAMRIL 35 >gi|159468548|ref|XP_001692436.1| dicer-like protein [Chlamydomonas reinhardtii] gi|158278149|gb|EDP03914.1| dicer-like protein [Chlamydomonas reinhardtii] Length = 3556 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%) Query: 15 YAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 Y F L +ALTH S + Y+RLEFLGD ++G ++S + ++ Sbjct: 3277 YCFRRPELCLQALTHVSHPRAAGCGGGYQRLEFLGDAVMGTVVS--FWLFRAGGSAEAMT 3334 Query: 73 VRFNSLVSAETCSQVARELDLASFIR 98 R +LVS + A L L +R Sbjct: 3335 ARRKALVSNGPLAAAAVCLGLQRHLR 3360 >gi|154149851|ref|YP_001403469.1| ribonuclease III [Candidatus Methanoregula boonei 6A8] gi|153998403|gb|ABS54826.1| ribonuclease III [Methanoregula boonei 6A8] Length = 154 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61 S LE R+G+ +R++L+ ALT + + + + L +GD +LG +++T L+ Sbjct: 5 LSELETRLGFTIKDRTILDAALTRQAYINENPTAGNDCMDPLATVGDAVLGAVVATRLYE 64 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 +G L+ V+ + A + L FIR K+ S D Sbjct: 65 S-GIRDKGTLTSEKIRGVNRDKTRAFAEKFQLHKFIRWGKGEEKNKVWEQGSQAFDAAFE 123 Query: 122 LIAALYL 128 + Sbjct: 124 ALIGAVF 130 >gi|328713081|ref|XP_003244986.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A-like isoform 4 [Acyrthosiphon pisum] Length = 443 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G H+P F V ++ A G SK+ A++ AA +L + Sbjct: 153 ISITGHVHNPVFRF-VAVNDGIYAYGDGLSKKEAKKNAAIALLDKL 197 Score = 38.0 bits (86), Expect = 0.98, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 ++ + H+ ++VV + L + G +K+AA++ AA + Sbjct: 245 CMARRWELPDYDFPQDERNEAHNVWYSVVCSLRDLK-SVGEGKTKQAAKRQAAHIM 299 >gi|328713075|ref|XP_001942593.2| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A-like isoform 1 [Acyrthosiphon pisum] gi|328713077|ref|XP_003244984.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A-like isoform 2 [Acyrthosiphon pisum] gi|328713079|ref|XP_003244985.1| PREDICTED: interferon-inducible double stranded RNA-dependent protein kinase activator A-like isoform 3 [Acyrthosiphon pisum] Length = 427 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +G H+P F V ++ A G SK+ A++ AA +L + Sbjct: 137 ISITGHVHNPVFRF-VAVNDGIYAYGDGLSKKEAKKNAAIALLDKL 181 Score = 38.0 bits (86), Expect = 0.98, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 ++ + H+ ++VV + L + G +K+AA++ AA + Sbjct: 229 CMARRWELPDYDFPQDERNEAHNVWYSVVCSLRDLK-SVGEGKTKQAAKRQAAHIM 283 >gi|322518582|sp|B7E321|DRB5_ORYSJ RecName: Full=Double-stranded RNA-binding protein 5; AltName: Full=dsRNA-binding protein 2; Short=OsDRB2; AltName: Full=dsRNA-binding protein 5 gi|215765071|dbj|BAG86768.1| unnamed protein product [Oryza sativa Japonica Group] Length = 404 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKREGIWT 227 T RSGP H P F+ VE++G++ A +K+ AE+ AA LK+ I T Sbjct: 106 YTTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQSNIRT 160 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 + V R GPDH PRF V +G + R AE AA L R Sbjct: 14 CFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAAEVALARL 68 >gi|255574401|ref|XP_002528114.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223532503|gb|EEF34293.1| double-stranded RNA binding protein, putative [Ricinus communis] Length = 786 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 18/34 (52%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +F+V V +G GM +++ A Q AA L+ Sbjct: 635 QFSVEVLFTGEKIGIGMGKTRKDAHQQAAENALR 668 >gi|118096265|ref|XP_414079.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 518 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 39/172 (22%), Gaps = 1/172 (0%) Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 + + + ++ + A+ L S Sbjct: 290 VMQDYIKYAVRYDNHYTNTKYCLCQMLREQLETAQGKKLHVAQSTQEICEAFEMSEFYEE 349 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 + E+ +L E K + T Sbjct: 350 TTALFEAKKTSLETKKQDEDDQMEDPNVIKMAVRFDKREYPPQITPKMYLLEWCRKEKHP 409 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225 V D F VV ++ D SK+ AEQ AA L+ G+ Sbjct: 410 QPVYETVQRPLDRLFCSVVTVADQKYRSALWDKSKKLAEQAAAIVCLRTLGV 461 >gi|255564369|ref|XP_002523181.1| conserved hypothetical protein [Ricinus communis] gi|223537588|gb|EEF39212.1| conserved hypothetical protein [Ricinus communis] Length = 970 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 18/37 (48%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + +E+ + G K+ AEQ AA L++ GI Sbjct: 58 YRCSLELPEIFVVSGTFKKKKDAEQCAAEMALEKLGI 94 >gi|195445903|ref|XP_002070536.1| GK12111 [Drosophila willistoni] gi|194166621|gb|EDW81522.1| GK12111 [Drosophila willistoni] Length = 649 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 34/138 (24%), Gaps = 2/138 (1%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 +E+ + F ++ + + I A + Sbjct: 306 FKFKEIRVLRFRSWNARRKFTKNRKHIKNIQRPTLPD-GTKLIKFPILAACGEGATNPRG 364 Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 R + + T P ++ V ++ L G Sbjct: 365 RKEWIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVNNLKYGTGYG 423 Query: 206 CSKRAAEQVAAAEVLKRE 223 SK+ A+ AA E L+ Sbjct: 424 TSKKQAKSEAARETLEVL 441 >gi|82582935|gb|ABB84393.1| interferon resistance protein [Orf virus] Length = 166 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 21/54 (38%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH PRFT + ISG SK+ A A A L Sbjct: 102 MMTHRPLEFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHNACASAL 155 >gi|242034167|ref|XP_002464478.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor] gi|241918332|gb|EER91476.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor] Length = 512 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKRE 223 T RSG H P FT VE++G+ +K+ AE+ AA+ LK+ Sbjct: 106 YTTERSGLGHLPVFTCTVELAGITFTGDPAKNKKQAEKNAASAAWSALKQL 156 >gi|328852770|gb|EGG01913.1| hypothetical protein MELLADRAFT_66687 [Melampsora larici-populina 98AG31] Length = 460 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 10/79 (12%) Query: 7 STLEKRIGYAFANRSLLEKALT--HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 ++++ Y F N +LL KALT H LE++GD +L + + + H Sbjct: 330 EEAQEKLNYRFRNPNLLRKALTLDHPEFR--------LLEWIGDSVLDVWAAMEITKHRK 381 Query: 65 SAKEGELSVRFNSLVSAET 83 K + + RF L + E Sbjct: 382 GHKVSKANERFMDLTNNEF 400 >gi|41057456|ref|NP_957929.1| ORF020 dsRNA-binding PKR inhibitor [Bovine papular stomatitis virus] gi|41018772|gb|AAR98377.1| ORF020 dsRNA-binding PKR inhibitor [Bovine papular stomatitis virus] Length = 195 Score = 52.2 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 1/65 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + + + E+ + G DH P FT V +S + CSK+AA A Sbjct: 121 NPVSAVNEYCMRVHRPLVFQEC-RTGGHDHCPLFTCTVVVSNKTVSTASGCSKKAARNAA 179 Query: 216 AAEVL 220 + L Sbjct: 180 CTDAL 184 >gi|33415075|gb|AAQ18045.1| double-stranded RNA-binding protein [Tillquist parapoxvirus] Length = 180 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 1/73 (1%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + + + E+ T G DH P FT + +SG A S Sbjct: 98 CVMRLKTLNPVSAVNEFCMITHRPLEF-CETRSGGQDHCPNFTCTIVVSGKLIATATGTS 156 Query: 208 KRAAEQVAAAEVL 220 ++ A A A L Sbjct: 157 RKLARHAACATAL 169 >gi|224084552|ref|XP_002307335.1| predicted protein [Populus trichocarpa] gi|222856784|gb|EEE94331.1| predicted protein [Populus trichocarpa] Length = 213 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 24/69 (34%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K LQE+A P Y+ P F VEI G+ +K+ A Sbjct: 90 HETGLCKNLLQEYAQKMNYAIPLYECQKDETPGRGLVFKCTVEIGGIRYIGASAKTKKEA 149 Query: 212 EQVAAAEVL 220 E AA L Sbjct: 150 EIKAARTAL 158 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKRE 223 T + GP H+P F V + + +++AAEQ AA L Sbjct: 27 YETIKEGPSHEPSFRSTVIVKEVRYDSLPGFFNRKAAEQSAAEVALVEL 75 >gi|119571203|gb|EAW50818.1| hCG201528 [Homo sapiens] Length = 288 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 65 RAAEAAINILKANASTCFAVPDPLMPDPSKQPKNQLNLIGSLQELAIHHGWRLPEYTLSQ 124 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G SK+ A++ AA + L + Sbjct: 125 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 166 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 37 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 75 >gi|326927225|ref|XP_003209793.1| PREDICTED: tRNA-dihydrouridine synthase 2-like, partial [Meleagris gallopavo] Length = 497 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 24/172 (13%), Positives = 40/172 (23%), Gaps = 1/172 (0%) Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 + + + ++ + A+ L + S Sbjct: 262 VMQDYIKYAVRYDNHYTNTKYCLCQMLREQLETAQGKKLHAAQSTQEICEAFEMSEFYEE 321 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 V E+ +L E K + T Sbjct: 322 TTAVFEAKKTSLETKKQDEDDQMEDPDVIKMAVRFDKREYPPQITPKMYLLEWCRKEKHP 381 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225 V D F VV ++ D SK+ AEQ AA L+ G+ Sbjct: 382 QPVYETVQRPLDKLFCSVVTVADQKYRSALWDKSKKLAEQAAAIVCLRTLGV 433 >gi|89114114|gb|ABD61648.1| R3D1 [Drosophila simulans] Length = 407 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223 TP Y++ G H+P F V A G SK+ A+ AA ++ + Sbjct: 117 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 171 >gi|89114100|gb|ABD61641.1| R3D1 [Drosophila simulans] gi|89114102|gb|ABD61642.1| R3D1 [Drosophila simulans] gi|89114104|gb|ABD61643.1| R3D1 [Drosophila simulans] gi|89114106|gb|ABD61644.1| R3D1 [Drosophila simulans] gi|89114108|gb|ABD61645.1| R3D1 [Drosophila simulans] gi|89114110|gb|ABD61646.1| R3D1 [Drosophila simulans] gi|89114112|gb|ABD61647.1| R3D1 [Drosophila simulans] Length = 407 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223 TP Y++ G H+P F V A G SK+ A+ AA ++ + Sbjct: 117 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 171 >gi|89114096|gb|ABD61639.1| R3D1 [Drosophila melanogaster] Length = 407 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223 TP Y++ G H+P F V A G SK+ A+ AA ++ + Sbjct: 117 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 171 >gi|89114084|gb|ABD61633.1| R3D1 [Drosophila melanogaster] gi|89114086|gb|ABD61634.1| R3D1 [Drosophila melanogaster] gi|89114088|gb|ABD61635.1| R3D1 [Drosophila melanogaster] gi|89114090|gb|ABD61636.1| R3D1 [Drosophila melanogaster] gi|89114092|gb|ABD61637.1| R3D1 [Drosophila melanogaster] gi|89114094|gb|ABD61638.1| R3D1 [Drosophila melanogaster] gi|89114098|gb|ABD61640.1| R3D1 [Drosophila melanogaster] Length = 407 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223 TP Y++ G H+P F V A G SK+ A+ AA ++ + Sbjct: 117 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 171 >gi|2984731|gb|AAC08018.1| interferon resistance determinant protein [Orf virus] gi|74230732|gb|ABA00537.1| DsRNA-binding, interferon resistance [Orf virus] Length = 183 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 22/54 (40%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH PRFT + ISG A SK+ A A + L Sbjct: 119 MMTHRPLEFCETRAGGEDHCPRFTCTITISGKVVAVADGASKKLARHTACSSAL 172 >gi|62637420|ref|YP_227418.1| DsRNA binding PKR inhibitor [Deerpox virus W-848-83] gi|115503280|gb|ABI99198.1| DsRNA binding PKR inhibitor [Deerpox virus W-848-83] Length = 199 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 +D + ++ + SGP H P FT + ISG+ + +K+ A+ Sbjct: 122 WKDKNPCSILNEYCQYTSRDWFIDIISSGPIHKPLFTATLCISGVKFRSAIGSTKKEAKT 181 Query: 214 VAAAEV 219 A Sbjct: 182 NATKMA 187 >gi|198476324|ref|XP_001357331.2| GA19915 [Drosophila pseudoobscura pseudoobscura] gi|198137644|gb|EAL34400.2| GA19915 [Drosophila pseudoobscura pseudoobscura] Length = 477 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE + P Y G H+ FT+ I G SK+ A++ A Sbjct: 263 NPIGLLQELCMQRRWPPPTYATETEMGLPHERLFTIACTIL-QYREIGKGKSKKIAKRSA 321 Query: 216 AAEVLKRE 223 A ++ R Sbjct: 322 AHKMWSRL 329 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223 TP Y++ G H+P F V A G SK+ A+ AA ++ + Sbjct: 166 TPGYELVQIEGAIHEPTFRFRVSFKEKDTPFTAMGAGRSKKEAKHAAARALIDKL 220 Score = 40.7 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 188 RFTVVVEISGLAPA--QGMDCSKRAAEQVAAAEVLKREGIWT 227 +F +V++S L G + R A++ AA L+ I T Sbjct: 434 QFQCLVQLSTLPVGVCHGTGPTAREAQRHAAQNALEYLKIMT 475 >gi|195156001|ref|XP_002018889.1| GL26052 [Drosophila persimilis] gi|194115042|gb|EDW37085.1| GL26052 [Drosophila persimilis] Length = 470 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE + P Y G H+ FT+ I G SK+ A++ A Sbjct: 256 NPIGLLQELCMQRRWPPPTYATETEMGLPHERLFTIACTIL-QYREIGKGKSKKIAKRSA 314 Query: 216 AAEVLKRE 223 A ++ R Sbjct: 315 AHKMWSRL 322 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223 TP Y++ G H+P F V A G SK+ A+ AA ++ + Sbjct: 159 TPGYELVQIEGAIHEPTFRFRVSFKEKDTPFTAMGAGRSKKEAKHAAARALIDKL 213 Score = 40.7 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 188 RFTVVVEISGLAPA--QGMDCSKRAAEQVAAAEVLKREGIWT 227 +F +V++S L G + R A++ AA L+ I T Sbjct: 427 QFQCLVQLSTLPVGVCHGTGPTAREAQRHAAQNALEYLKIMT 468 >gi|255545990|ref|XP_002514055.1| conserved hypothetical protein [Ricinus communis] gi|223547141|gb|EEF48638.1| conserved hypothetical protein [Ricinus communis] Length = 361 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 24/81 (29%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 + K LQE+A P Y P F VEI G+ Sbjct: 86 CDEVNDSISQPVHETGLCKNLLQEYAQKMNYAIPLYLCQKNESPGRGTLFKCTVEIGGIH 145 Query: 200 PAQGMDCSKRAAEQVAAAEVL 220 +K+ AE AA L Sbjct: 146 YIGASAKTKKEAEIKAARTAL 166 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 2/84 (2%) Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 S K+ LQE+A K TP Y+ GP H+P F V ++ + Sbjct: 1 MCTLPAMCSSVSNCYVFKSRLQEYAQKKGLPTPVYETIK-EGPSHEPSFRSTVIVNDIRY 59 Query: 201 AQGMDC-SKRAAEQVAAAEVLKRE 223 +++AAEQ AA L Sbjct: 60 DSLPGFFNRKAAEQSAAEVALMEL 83 >gi|224055781|ref|XP_002298650.1| predicted protein [Populus trichocarpa] gi|222845908|gb|EEE83455.1| predicted protein [Populus trichocarpa] Length = 357 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 23/49 (46%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T RSGP H P FT VE++G+ +K+ AE+ AA Sbjct: 106 YTTVRSGPGHVPVFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVAL 65 >gi|290508248|ref|ZP_06547619.1| ribonuclease III [Klebsiella sp. 1_1_55] gi|289777642|gb|EFD85639.1| ribonuclease III [Klebsiella sp. 1_1_55] Length = 176 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 3/160 (1%) Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +I+ L++ F EG++S +LV T +++ARE +L +R+ K S Sbjct: 1 MIANALYHRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRES 60 Query: 114 IQADVVESLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 I AD VE+LI ++LD I+ + + + G ++D KT LQE+ + Sbjct: 61 ILADTVEALIGGVFLDSDIQNVERLILSWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 120 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 LPSYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 160 >gi|307202941|gb|EFN82161.1| Protein DGCR8 [Harpegnathos saltator] Length = 659 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 18/144 (12%), Positives = 40/144 (27%), Gaps = 6/144 (4%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVV-----ESLIAALYLDGGIEVAGTFVD 140 + + + F S+ + + + + + G V Sbjct: 301 FRFKAIKVMRFQSWSARRKFTKNKRHRKQLERPTLPDGTKLITFPVNSSCSVTGGGNAVG 360 Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLA 199 QR K K+ + + ++ ++ VV I+ + Sbjct: 361 DDNGQRPPKHWIMNPSGKSYVCILHEYVQHALKKQPTYKFKELENAATPYSAVVCINDME 420 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ A+ AA + L+ Sbjct: 421 YGSGFGSSKKQAKANAARKTLEIL 444 >gi|226481549|emb|CAX73672.1| Protein DGCR8 (DiGeorge syndrome critical region 8) [Schistosoma japonicum] Length = 369 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 1/67 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K+ + V + ++D + + V I+G G SK+ A AA Sbjct: 78 KSYVCILHEYCQNVIRHPPTYQTTVLENDKNPYQMTVFINGTPYGTGTGQSKKCARLEAA 137 Query: 217 AEVLKRE 223 + L+ Sbjct: 138 RKALEVL 144 >gi|213512963|ref|NP_001133959.1| Spermatid perinuclear RNA-binding protein [Salmo salar] gi|209155962|gb|ACI34213.1| Spermatid perinuclear RNA-binding protein [Salmo salar] Length = 718 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + + +YK+ +SGP H P FT+ V++ + SK+ A+ A Sbjct: 431 QPMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDSTVH-EASGSSKKTAKLHVAV 489 Query: 218 EVLKREGIWT 227 +VL+ G T Sbjct: 490 KVLQAMGYPT 499 >gi|147856819|emb|CAN79168.1| hypothetical protein VITISV_028064 [Vitis vinifera] Length = 292 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 25/100 (25%) Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 +F K L + K G T +SG Sbjct: 190 YAQKRNLPLPMYSFESIGPSHNCRFKSKDDYGVYKNLLQEMARKEGYQLPVYSTEKSGVS 249 Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P F VEI G +K+ AE AA Sbjct: 250 HMPTFLSTVEIEGETFVGQKAKTKKLAEMNAAKAAYTHLK 289 Score = 44.9 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223 P T + GP H+P F V + GL+ + S + A+ AA ++ Sbjct: 25 NPPEYSTRKDGPPHNPTFXATVSVGGLSFSTDHPARSSKEAQSNAAGLAIQYL 77 >gi|308476926|ref|XP_003100678.1| CRE-ADR-1 protein [Caenorhabditis remanei] gi|308264696|gb|EFP08649.1| CRE-ADR-1 protein [Caenorhabditis remanei] Length = 1022 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 20/179 (11%), Positives = 40/179 (22%), Gaps = 10/179 (5%) Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 + L + + N V+ E R + + V Sbjct: 477 RHATNRLGSDMNILQCLYTICSVLNCTVTVECEPAEDRPIGDGRMYFM--GKCSIVDHSE 534 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 + + L + + + +A+ Sbjct: 535 GGQTFQTKSDSVQSKPLAKEHAASEMLRNYFEIDPNTCCKSENVNAQGPCAVLHAMLNKQ 594 Query: 172 TPEYKVTFRSGPDHDPR--------FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 T + ++ P+ F I G SK+ A+ AA LK+ Sbjct: 595 TKQRTKIAYEFKENVPQVAGSSAQDFYCDCVIDENDRYTGSGRSKKIAKNAAAMMALKK 653 >gi|46121645|ref|XP_385377.1| hypothetical protein FG05201.1 [Gibberella zeae PH-1] Length = 331 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 76/262 (29%), Gaps = 58/262 (22%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L + H ++E+LE+ GD L ++ + +F F G S L Sbjct: 48 NPDLEAQVFRHP---GLGGPNWEKLEWYGDATLEMISTEFIFETFPHLPSGRCSQIREQL 104 Query: 79 VSAETCSQVARELDLASFIRVSSD--------LRKDVCSFMTSIQADVVESLIAALYLDG 130 V T + RE + ++ D + + +Q DV E+ + A+ Sbjct: 105 VRNVTLAGYYREYGMEHKTQLPIDVGKMTVLLQTQKNNKDVIKLQGDVFEAYVGAVVKSH 164 Query: 131 GIEVAGTFVD-KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD----- 184 A K R +K + ++ E+ A + P+ Sbjct: 165 PQGNANAVAWLKMLWGRTIKGQIQQAESYREIIAQAQPIITQQSPTMQEQSTQPEAKAVE 224 Query: 185 ------------------------------------HDPRFTVVVEISG-----LAPAQG 203 P F + V + G A G Sbjct: 225 PLTEQNAKARLSTAIAVPGVKLRYEDMPCKRKDRDTGLPLFAIGVYLDGWGETNKQLAFG 284 Query: 204 MDCSKRAAEQVAAAEVLKREGI 225 + K A AA +VLK E + Sbjct: 285 VAKRKAEAGGKAALQVLKNEKV 306 >gi|168043507|ref|XP_001774226.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] gi|162674494|gb|EDQ61002.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] Length = 683 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L + + GV+ T RSGP H P FT VE++ ++ + +K+ AE+ AA Sbjct: 152 CKNLLQETAQRAGVSLPVYATTRSGPGHLPVFTCTVEVANMSFSGEAAKTKKQAEKNAAM 211 Query: 218 E---VLKRE 223 +++ Sbjct: 212 AAWSAIQQL 220 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 R GPDH PRF V +G + R AE AA L Sbjct: 78 CFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHAAAEVALNTL 132 >gi|82582931|gb|ABB84391.1| interferon resistance protein [Orf virus] Length = 166 Score = 51.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 22/54 (40%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH PRFT + ISG + SK+ A A A L Sbjct: 102 MMTRRPLEFCETRSGGEDHCPRFTCTITISGKVVSVADGASKKLARHAACASAL 155 >gi|330928085|ref|XP_003302123.1| hypothetical protein PTT_13822 [Pyrenophora teres f. teres 0-1] gi|311322704|gb|EFQ89784.1| hypothetical protein PTT_13822 [Pyrenophora teres f. teres 0-1] Length = 441 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 71/210 (33%), Gaps = 25/210 (11%) Query: 23 LEKA-LTHSSI-----------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 L +A TH S YERLE LGD + L+ S L+N F E Sbjct: 134 LHEAVFTHRSAIFDPSIPGSTLGQDLSLDYERLELLGDAYIELIASRALYNRFPHVDVPE 193 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL-- 128 L + LV T + + ++ + K + AD+VE+ +AA+ L Sbjct: 194 LCMWRERLVENSTLGRFSHAYGFPDRLKHRAMWDKTS-KQYQKVVADIVEAYVAAIVLSD 252 Query: 129 -DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD- 186 D G E A ++ + W + L + + E G + +D Sbjct: 253 PDNGFEAAEAWLTELWAPQLLGFREKIIENPQARNELNRLVLGKDVKLITKEEKPMSYDE 312 Query: 187 ---PRFTVVVEI-----SGLAPAQGMDCSK 208 + + + + + G +K Sbjct: 313 NSIQCYHIGIYLTGWGYNDEWLGSGHGQNK 342 >gi|313225131|emb|CBY20924.1| unnamed protein product [Oikopleura dioica] Length = 2665 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 4/128 (3%) Query: 99 VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158 + + + + + L L + + + A+ Sbjct: 14 YDFCKNDSHSTRLDKPEKTALAEFLRFLGLKKVFSNHHYLLKYWQHSLFILEVLSDALAR 73 Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAP-AQGMDCSKRAAEQVA 215 + F K ++GP H P FT V++ G A+G SK+ A+ A Sbjct: 74 LGPNHYHSHNFISKKIEKKKKKNGPPHKPTFTFECSVKVKGSWYAAKGKSNSKQNAKHEA 133 Query: 216 AAEVLKRE 223 A L++ Sbjct: 134 AK-ALRKI 140 >gi|224125924|ref|XP_002319709.1| predicted protein [Populus trichocarpa] gi|222858085|gb|EEE95632.1| predicted protein [Populus trichocarpa] Length = 240 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 2/50 (4%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLKREG 224 T +SG H P F VEI G G +K+ AE AA Sbjct: 190 YSTNKSGEAHVPTFISTVEIEGE-IFTGQGAKTKKQAEMSAAKTAYTALK 238 Score = 38.4 bits (87), Expect = 0.79, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAP--AQGMDCSKRAAEQVAAAEVLK 221 + R G H+PRF V ++ ++ + SK+ A+ AA + Sbjct: 20 YESSRQGQAHNPRFLATVTVNNISFHSPSPSNTSKK-AQNDAAKLAYE 66 >gi|241723276|ref|XP_002413706.1| secreted protein, putative [Ixodes scapularis] gi|215507522|gb|EEC17014.1| secreted protein, putative [Ixodes scapularis] Length = 211 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 9/107 (8%) Query: 14 GYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 GY F N ++L KAL H S +++E L+++G +L ++ + Sbjct: 42 GYTFKNPNILLKALLHPSYKARDRKGAADNFEPLDYVGGFVLDYVVGRTRVRRYILMNSP 101 Query: 70 ELSVRFNSLV-----SAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 + S ++ + A + + ++ + + K Sbjct: 102 NKTQHAMSHAKVAVLRQDSLAYFAVKNNFHKYVFLDRPIEKSSLRDF 148 >gi|328778714|ref|XP_397444.4| PREDICTED: microprocessor complex subunit DGCR8-like [Apis mellifera] Length = 638 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 1/81 (1%) Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 + + + P ++ VV I+ + Sbjct: 344 QRPPKHWIMNPSGKSYVCILHEYVQHALKKQPTYKFKELENAATP-YSAVVCINDMEYGS 402 Query: 203 GMDCSKRAAEQVAAAEVLKRE 223 G SK+ A+ AA + L+ Sbjct: 403 GFGSSKKQAKANAARKTLEIL 423 >gi|87117418|gb|ABD19995.1| Rnc [Shigella flexneri] gi|87117421|gb|ABD19997.1| Rnc [Shigella flexneri] gi|87117427|gb|ABD20001.1| Rnc [Shigella flexneri] gi|87117430|gb|ABD20003.1| Rnc [Shigella dysenteriae] gi|87117433|gb|ABD20005.1| Rnc [Shigella flexneri] gi|87117436|gb|ABD20007.1| Rnc [Shigella flexneri] gi|87117439|gb|ABD20009.1| Rnc [Shigella flexneri] gi|87117442|gb|ABD20011.1| Rnc [Shigella boydii] gi|87117445|gb|ABD20013.1| Rnc [Shigella dysenteriae] gi|87117448|gb|ABD20015.1| Rnc [Shigella dysenteriae] gi|87117451|gb|ABD20017.1| Rnc [Shigella boydii] gi|87117454|gb|ABD20019.1| Rnc [Shigella boydii] gi|87117457|gb|ABD20021.1| Rnc [Shigella dysenteriae] gi|87117460|gb|ABD20023.1| Rnc [Shigella dysenteriae] gi|87117466|gb|ABD20027.1| Rnc [Shigella dysenteriae] gi|87117469|gb|ABD20029.1| Rnc [Shigella boydii] gi|87117472|gb|ABD20031.1| Rnc [Shigella boydii] gi|87117475|gb|ABD20033.1| Rnc [Shigella boydii] gi|87117478|gb|ABD20035.1| Rnc [Shigella dysenteriae] gi|87117481|gb|ABD20037.1| Rnc [Shigella flexneri] gi|87117484|gb|ABD20039.1| Rnc [Shigella dysenteriae] gi|87117487|gb|ABD20041.1| Rnc [Shigella boydii] gi|87117490|gb|ABD20043.1| Rnc [Shigella boydii] gi|87117493|gb|ABD20045.1| Rnc [Shigella boydii] gi|87117499|gb|ABD20049.1| Rnc [Shigella dysenteriae] gi|87117502|gb|ABD20051.1| Rnc [Shigella boydii] gi|87117505|gb|ABD20053.1| Rnc [Shigella dysenteriae] gi|87117508|gb|ABD20055.1| Rnc [Shigella boydii] gi|87117511|gb|ABD20057.1| Rnc [Shigella boydii] gi|87117517|gb|ABD20061.1| Rnc [Shigella boydii] gi|87117523|gb|ABD20065.1| Rnc [Shigella boydii] gi|87117526|gb|ABD20067.1| Rnc [Shigella flexneri] gi|87117529|gb|ABD20069.1| Rnc [Shigella flexneri] gi|87117532|gb|ABD20071.1| Rnc [Shigella boydii] gi|87117535|gb|ABD20073.1| Rnc [Escherichia coli] gi|87117538|gb|ABD20075.1| Rnc [Escherichia coli] gi|87117541|gb|ABD20077.1| Rnc [Escherichia coli] Length = 178 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 3/162 (1%) Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +I+ L++ F EG++S +LV T +++ARE +L +R+ K Sbjct: 1 SYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60 Query: 112 TSIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 SI AD VE+LI ++LD I+ + + G ++D KT LQE+ + Sbjct: 61 ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162 >gi|242069683|ref|XP_002450118.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor] gi|241935961|gb|EES09106.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor] Length = 118 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220 T T + GP H+P F V ++ S++AAEQ AA L Sbjct: 47 TTLEYHTLKEGPSHEPVFKSTVVVNNTRYESLPGFFSRKAAEQSAAEVAL 96 >gi|45383189|ref|NP_989818.1| interferon-induced, double-stranded RNA-activated protein kinase [Gallus gallus] gi|38194196|dbj|BAD01484.1| double-stranded RNA-activated protein kinase [Gallus gallus] Length = 550 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 23/66 (34%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L K +Y R+G H P ++ ISG G S A+Q AA Sbjct: 100 YISLLNKYSQKTLQLVDYNNINRTGDPHAPMYSCSCVISGHVYGNGKGNSLAVAKQAAAK 159 Query: 218 EVLKRE 223 E + Sbjct: 160 EAYEVL 165 Score = 43.0 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 17/31 (54%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 Y GP HDP F VVV+I+G+ G+ Sbjct: 22 YVDVDMRGPSHDPEFEVVVKINGVKYGTGVG 52 >gi|321457593|gb|EFX68676.1| hypothetical protein DAPPUDRAFT_329837 [Daphnia pulex] Length = 120 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAK 67 E+ + Y F ++ +L +ALT +S + +Y+RLE +GD L L + F Sbjct: 55 FEEVLSYTFNDKEVLLEALT---YGNSIRSLNYQRLEVIGDAALEFLAALQFFKQSSLYH 111 Query: 68 E 68 Sbjct: 112 S 112 >gi|242025570|ref|XP_002433197.1| staufen, putative [Pediculus humanus corporis] gi|212518738|gb|EEB20459.1| staufen, putative [Pediculus humanus corporis] Length = 767 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L +T +Y++T GP H FTV + + S + A+ AAA Sbjct: 116 PMCLVNELARFNKITHQYRLTNEHGPAHKKSFTVTLTLGTEEY-TADAPSIKKAQHSAAA 174 Query: 218 EVLKR 222 E L + Sbjct: 175 EALAK 179 >gi|307178016|gb|EFN66877.1| Protein DGCR8 [Camponotus floridanus] Length = 643 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 38/143 (26%), Gaps = 5/143 (3%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVV----ESLIAALYLDGGIEVAGTFVDK 141 + + + F S+ + LI G+ Sbjct: 286 FRFKSIKVMRFQSWSARRKFTKNKKHRKQLERPTLPDGTKLITFPVNSSSTAGNGSTAGD 345 Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAP 200 QR K K+ + + ++ ++ VV I+ + Sbjct: 346 DNGQRPAKHWIMNPSGKSYVCILHEYVQHALKKQPTYKFKELENAATPYSAVVCINDMEY 405 Query: 201 AQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ A+ AA + L+ Sbjct: 406 GSGFGSSKKQAKANAARKTLEIL 428 >gi|87117424|gb|ABD19999.1| Rnc [Shigella flexneri] Length = 178 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 3/162 (1%) Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +I+ L++ F A EG++S +LV T +++ARE +L +R+ K Sbjct: 1 SYVIANALYHRFPRADEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60 Query: 112 TSIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 SI AD VE+LI ++LD I+ + + G ++D KT LQE+ + Sbjct: 61 ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162 >gi|291618446|ref|YP_003521188.1| Rnc [Pantoea ananatis LMG 20103] gi|291153476|gb|ADD78060.1| Rnc [Pantoea ananatis LMG 20103] Length = 176 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 3/160 (1%) Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 +I+ L++ F EG++S +LV T +++ARE DL +R+ K S Sbjct: 1 MIANALYHRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRES 60 Query: 114 IQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 I AD VE+LI ++LD I+ + + G ++D KT LQE+ + Sbjct: 61 ILADTVEALIGGVFLDSDIQTVEKLILDWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 120 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 P Y V G HD FT+ ++SG+ P G+ S+R Sbjct: 121 LPSYLVVQVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 160 >gi|211956314|ref|YP_002302383.1| DsRNA binding PKR inhibitor [Deerpox virus W-1170-84] gi|115503109|gb|ABI99027.1| DsRNA binding PKR inhibitor [Deerpox virus W-1170-84] Length = 199 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 25/66 (37%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 +D + ++ Y SGP H P FT + ISG+ + +K+ A+ Sbjct: 122 WKDKNPCSVLNEYCQYTSRDWYIDIISSGPIHKPLFTATLCISGVKFRSAIGSTKKEAKT 181 Query: 214 VAAAEV 219 A Sbjct: 182 NATRMA 187 >gi|168043471|ref|XP_001774208.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] gi|162674476|gb|EDQ60984.1| double-stranded RNA binding protein [Physcomitrella patens subsp. patens] Length = 577 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L + + GV+ T RSGP H P FT VE++ + + +K+ AE+ AA Sbjct: 106 CKNLLQETAQRAGVSLPVYSTTRSGPGHLPVFTCTVELAKMTFSGEAAKTKKQAEKNAAM 165 Query: 218 EVLKREG 224 Sbjct: 166 AAWSALK 172 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 + R GPDH PRF V +G + R AE AA L Sbjct: 32 CINLPAYACIREGPDHAPRFKATVSFNGEIFESPNYCNTLRQAEHAAAEVALNTL 86 >gi|87117520|gb|ABD20063.1| Rnc [Shigella boydii] Length = 178 Score = 51.9 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 3/162 (1%) Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +I+ +L++ F EG++S +LV T +++ARE +L +R+ K Sbjct: 1 SYVIANVLYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60 Query: 112 TSIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 SI AD VE+LI ++LD I+ + + G ++D KT LQE+ + Sbjct: 61 ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162 >gi|312067398|ref|XP_003136724.1| double-stranded RNA binding domain-containing protein family protein [Loa loa] gi|307768110|gb|EFO27344.1| double-stranded RNA binding domain-containing protein family protein [Loa loa] Length = 445 Score = 51.5 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GP + F ++ G G +K+ A+ +AA ++ + W Sbjct: 211 NYEIDEEGPPNHRIFIATCKM-GKVHVVGHGKTKKIAKTLAAQKMYAQLENW 261 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F + E+ G+ G +K+ A+Q+AA +LK+ Sbjct: 118 FAIRCELYGIH-TIGHGRTKKIAKQMAAKNMLKKM 151 >gi|126177989|ref|YP_001045954.1| ribonuclease III [Methanoculleus marisnigri JR1] gi|125860783|gb|ABN55972.1| RNAse III [Methanoculleus marisnigri JR1] Length = 156 Score = 51.5 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 5/129 (3%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFD 64 +E+RIGY F +R+LLE+ALT + + + + L LGD + + Sbjct: 14 IEERIGYTFKDRALLERALTRLAYTLEAGIPPETHMDALATLGDAV-INVAVVEAVVAGG 72 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + +G +S R +LV+ +A +LDLA ++R + A+ +E+L+ Sbjct: 73 AHDKGAISNRKMNLVNMTRLRGLAEDLDLADYVRWGKGEAAQRVWTSGRVLAECLEALVG 132 Query: 125 ALYLDGGIE 133 A+YLDGG++ Sbjct: 133 AVYLDGGMD 141 >gi|298204936|emb|CBI34243.3| unnamed protein product [Vitis vinifera] Length = 551 Score = 51.5 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223 T RSGP H P F+ VEI+G++ +K+ A++ AA L++ Sbjct: 106 YTTIRSGPGHVPVFSCTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSALRKL 156 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAAAEVALNTL 68 >gi|225451189|ref|XP_002271134.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 543 Score = 51.5 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223 T RSGP H P F+ VEI+G++ +K+ A++ AA L++ Sbjct: 106 YTTIRSGPGHVPVFSCTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSALRKL 156 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAAAEVALNTL 68 >gi|328854071|gb|EGG03206.1| hypothetical protein MELLADRAFT_109487 [Melampsora larici-populina 98AG31] Length = 534 Score = 51.5 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 7/132 (5%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 LE ++ Y F + +LL AL S RL++LG+ IL + L + + Sbjct: 379 KELEAKLKYKFNDINLLRNAL-----SRKNLRENRRLKWLGEAILDDWTTYALKDVLVKS 433 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV--CSFMTSIQADVVESLIA 124 + T S AR V S + + +T QAD+V LIA Sbjct: 434 PRRRPLHALAYMHWNATLSTWARRWLQPIKGLVESKIFEVNKDGRALTKTQADLVLVLIA 493 Query: 125 ALYLDGGIEVAG 136 + +D + Sbjct: 494 VMCIDCKGDFYP 505 >gi|195036498|ref|XP_001989707.1| GH18644 [Drosophila grimshawi] gi|193893903|gb|EDV92769.1| GH18644 [Drosophila grimshawi] Length = 654 Score = 51.5 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 33/138 (23%), Gaps = 1/138 (0%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 + + + F ++ + L + G + Sbjct: 310 FKFKTIRVLRFRSWNARRKFTKNRKNIKNIQRPTLPDGTKLIKFPILAAGGADGSSNPRG 369 Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 R + + T P ++ V ++ L G Sbjct: 370 RREWIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVNNLKYGTGYG 428 Query: 206 CSKRAAEQVAAAEVLKRE 223 SK+ A+ AA E L+ Sbjct: 429 TSKKQAKSEAARETLEIL 446 >gi|242084480|ref|XP_002442665.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor] gi|241943358|gb|EES16503.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor] Length = 394 Score = 51.5 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220 T + GP H+P F V ++ S++AAEQ AA L Sbjct: 52 PTPEYHTLKEGPSHEPVFKSTVLVNNTTYESLPGFFSRKAAEQSAAEVAL 101 Score = 47.2 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 14/32 (43%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F VEI G+ +K+ AE AA L Sbjct: 155 FICTVEIGGIQYIGAAARTKKEAEIKAARTAL 186 >gi|195641916|gb|ACG40426.1| double-stranded RNA binding motif family protein [Zea mays] gi|195644492|gb|ACG41714.1| double-stranded RNA binding motif family protein [Zea mays] Length = 352 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 T RSGP H P F+ VE++GL+ A +K+ AE+ AA LK+ Sbjct: 106 YTTVRSGPGHSPVFSSTVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQM 156 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 7/58 (12%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAEQVAAAEVLKRE 223 + V R GPDH PRF V +G S R AE AA L R Sbjct: 14 CFSLPSYVCTREGPDHAPRFRAAVTFNGETF---EGPSGCTTLRQAEHAAAEVALARL 68 >gi|332027530|gb|EGI67607.1| RISC-loading complex subunit tarbp2 [Acromyrmex echinatior] Length = 343 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE PEY + GP H FT+ ++S G+ +K+ A+ AA ++ Sbjct: 114 LQELCAENNLHEPEYFLIQDVGPPHAKIFTIRCKVSNFEE-DGIATTKKQAKHDAAKRMV 172 Query: 221 KREG 224 + Sbjct: 173 DKIK 176 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + + AK G+TP+YK+ G H FT V A G K+ A+ Sbjct: 1 MSKTPVSILQEMMAKQGMTPDYKLIHDGGGRHVNTFTYRVTCD-SLSATGTGRCKKDAKH 59 Query: 214 VAAAEVL 220 AA +L Sbjct: 60 EAAKAML 66 >gi|297821192|ref|XP_002878479.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4 [Arabidopsis lyrata subsp. lyrata] gi|297324317|gb|EFH54738.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4 [Arabidopsis lyrata subsp. lyrata] Length = 343 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 18/44 (40%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 T SGP H P F VE +G +K+ AE AA Sbjct: 91 YATATSGPSHSPTFISTVEFAGKVFTGDEAKTKKLAEMSAAKIA 134 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%) Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 R GP H PRF V G + + ++AE AA L Sbjct: 26 EREGPPHAPRFRCKVTFCGQTFQSLEFFPTLKSAEHAAAKIALASL 71 >gi|256080367|ref|XP_002576453.1| hypothetical protein [Schistosoma mansoni] gi|238661721|emb|CAZ32690.1| expressed protein [Schistosoma mansoni] Length = 764 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%) Query: 176 KVTFRSGPDHDPRFTVVVEIS-----GLAPAQGMDCSKRAAEQVAAAEVLK 221 SGP H+ F V V I+ G+ S + A ++AA L+ Sbjct: 30 WTCEESGPFHNKVFRVSVIINHHSLKSSEIYYGVGSSVKEARRMAAESALQ 80 Score = 42.6 bits (98), Expect = 0.038, Method: Composition-based stats. Identities = 19/188 (10%), Positives = 49/188 (26%), Gaps = 4/188 (2%) Query: 42 RLEFL-GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 RL L G + + + K + + + + + A+ ++ Sbjct: 228 RLRILAGLHFIQPFFKIQKLTNCEPNKFTCICLLDGWKYTENRSISAKKAQNAAAQSMLN 287 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 + + + + +Y + R Sbjct: 288 NMNKIENKCSTVPFYDKQYDVTSKGVYKQNHKPCKIKLQLIQHRAFDESVHPVCRLEYFR 347 Query: 161 LQEWAHAKFGVTPEYKVTFRSGP---DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + ++ P F +E S + + +KR A+++AA Sbjct: 348 IVNNLDKVKYTLLNDQLPSGEHKSLAPGRPPFIYQLEFSNMCIQGPVANNKRLAKRLAAE 407 Query: 218 EVLKREGI 225 +L + G+ Sbjct: 408 LLLTKLGL 415 >gi|157130321|ref|XP_001655660.1| hypothetical protein AaeL_AAEL011753 [Aedes aegypti] gi|108871912|gb|EAT36137.1| conserved hypothetical protein [Aedes aegypti] Length = 318 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +++ + PE+ SGP H P F I G +G+ +K+ A+Q A E++ Sbjct: 108 VRDICVQRNFEMPEFNCVRSSGPSHAPEFEYECRI-GAIVRRGIHKTKKGAKQAACNEMI 166 Query: 221 KRE 223 K Sbjct: 167 KTL 169 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G + FT V G + G+ SK+ ++ AA ++LK Sbjct: 40 GNPNSKVFTTSVLALGFT-SSGIGRSKKDSKHDAAYKLLKLL 80 >gi|321468042|gb|EFX79029.1| hypothetical protein DAPPUDRAFT_319983 [Daphnia pulex] Length = 130 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 5/78 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESY-ERLEFLGDRILGL-LISTLLFNHFDSA 66 E+ + Y F ++ +L +ALT +S + +RLE +GD L Sbjct: 55 FEEVLSYTFNDKEVLLEALT---YGNSIRSLNDQRLEVIGDAALEFLAALQFFKQSSLYH 111 Query: 67 KEGELSVRFNSLVSAETC 84 G++S ++ V + Sbjct: 112 SAGDISQLRSACVCDDIF 129 >gi|321457595|gb|EFX68678.1| hypothetical protein DAPPUDRAFT_329840 [Daphnia pulex] Length = 154 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAK 67 E+ + Y F ++ +L +ALT +S + +Y+RLE +GD L L + F Sbjct: 89 FEEVLSYTFNDKEVLLEALT---YGNSIRSLNYQRLEVIGDAALEFLAALQFFKQSSLYH 145 Query: 68 E 68 Sbjct: 146 S 146 >gi|302306614|ref|NP_983011.2| ABR065Wp [Ashbya gossypii ATCC 10895] gi|299788601|gb|AAS50835.2| ABR065Wp [Ashbya gossypii ATCC 10895] Length = 344 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 51/179 (28%), Gaps = 2/179 (1%) Query: 45 FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 ++G +L + + S ++ L IR+ S Sbjct: 146 YIGLPVLAQIGRGWGIESERETVMERFLRQEPSHMTLGRLRFFNNTLKEIDGIRILSSSN 205 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW 164 + M +V +L A+ +E ++ + EL Sbjct: 206 MSESASMAMAVRSIVGALWASTQDLQLVERFLDA-HVMSRKLPITQLFMFEQPTRELARL 264 Query: 165 AHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + P K+ +G P F V V +G S + A+ AA + L + Sbjct: 265 CSREGLERPVSKLIAETGRLSKAPVFVVGVFSGEEKLGEGFGSSLKEAKARAATDALMK 323 >gi|158285608|ref|XP_308394.4| AGAP007478-PA [Anopheles gambiae str. PEST] gi|157020074|gb|EAA04622.5| AGAP007478-PA [Anopheles gambiae str. PEST] Length = 1149 Score = 51.5 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L + +Y++T SGP H FTV++++ S + A+ AA Sbjct: 424 TMCLVNELARYNKIQHQYRLTGESGPAHKKHFTVMLKLGDEEY-TAEGASIKKAQHKAAG 482 Query: 218 EVL 220 + + Sbjct: 483 DAI 485 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP H F ++ G +G K+ +++ AA ++L+ Sbjct: 768 ISEKGPPHMTVFVTQCKV-GTIVTEGEGTGKKLSKKRAAEKMLEEL 812 Score = 43.8 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 3/72 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + L + A+ P Y + P +FT+ V G A G+ +K+AA+ Sbjct: 877 ENPISRLMQIQQARKEKQPVYTLQENDRPAVGRRRQFTIEVSAGGRQ-ATGVGMTKKAAK 935 Query: 213 QVAAAEVLKREG 224 AA +L G Sbjct: 936 WNAAEALLIELG 947 >gi|315049207|ref|XP_003173978.1| double-strand-specific pac1 ribonuclease [Arthroderma gypseum CBS 118893] gi|311341945|gb|EFR01148.1| double-strand-specific pac1 ribonuclease [Arthroderma gypseum CBS 118893] Length = 397 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 29/225 (12%) Query: 23 LEKA-LTH-------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 L+ A TH + + +++Y+RLE LGD + L+ + L++ +F + G+++ Sbjct: 138 LKTAVFTHTGIMERGPISTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKIAQA 197 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 ++V ET ++ A ++ SSD+R V T + DV E+ +AA + Sbjct: 198 RETMVKNETLAEYAIAYGFDQRLKTSSDIR-SVPKRWTKVMGDVFEAYVAAAIIADPKGG 256 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-----DHDPR- 188 + K + + + G D PR Sbjct: 257 LQAVESWLTQLWLPKLAEVKVPLASVALAQGSKASLKDKLAATVMSRGIKLQYLDEKPRQ 316 Query: 189 --------FTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220 F + V ++G G SK A AA L Sbjct: 317 REGGLVTSF-IGVYLTGWGYEKKLLGSGSGLSKSEAGNEAALNAL 360 >gi|21357163|ref|NP_651879.1| partner of drosha [Drosophila melanogaster] gi|7302074|gb|AAF57175.1| partner of drosha [Drosophila melanogaster] gi|16197965|gb|AAL13753.1| LD23072p [Drosophila melanogaster] gi|220945782|gb|ACL85434.1| pasha-PA [synthetic construct] gi|220955486|gb|ACL90286.1| pasha-PA [synthetic construct] Length = 642 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/138 (10%), Positives = 32/138 (23%), Gaps = 2/138 (1%) Query: 86 QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145 + + + F ++ + + I + Sbjct: 299 FKFKVIRVLRFRSWNARRKFTKNRKHIKNIQRPTLPD-GTKLIKFPILANAGEGSTNPRG 357 Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 R + + T P ++ V ++ L G Sbjct: 358 RKEWIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVNNLKYGTGYG 416 Query: 206 CSKRAAEQVAAAEVLKRE 223 SK+ A+ AA E L+ Sbjct: 417 TSKKQAKSEAARETLEIL 434 >gi|195575342|ref|XP_002105638.1| GD21592 [Drosophila simulans] gi|194201565|gb|EDX15141.1| GD21592 [Drosophila simulans] Length = 642 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 1/75 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + + T P ++ V ++ L G SK Sbjct: 361 WIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVNNLKYGTGYGTSK 419 Query: 209 RAAEQVAAAEVLKRE 223 + A+ AA E L+ Sbjct: 420 KQAKSEAARETLEIL 434 >gi|195505492|ref|XP_002099528.1| GE10954 [Drosophila yakuba] gi|194185629|gb|EDW99240.1| GE10954 [Drosophila yakuba] Length = 643 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 1/75 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + + T P ++ V ++ L G SK Sbjct: 362 WIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVNNLKYGTGYGTSK 420 Query: 209 RAAEQVAAAEVLKRE 223 + A+ AA E L+ Sbjct: 421 KQAKSEAARETLEIL 435 >gi|195354476|ref|XP_002043723.1| GM16438 [Drosophila sechellia] gi|194128923|gb|EDW50966.1| GM16438 [Drosophila sechellia] Length = 642 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 1/75 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + + T P ++ V ++ L G SK Sbjct: 361 WIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVNNLKYGTGYGTSK 419 Query: 209 RAAEQVAAAEVLKRE 223 + A+ AA E L+ Sbjct: 420 KQAKSEAARETLEIL 434 >gi|194904820|ref|XP_001981066.1| GG11821 [Drosophila erecta] gi|190655704|gb|EDV52936.1| GG11821 [Drosophila erecta] Length = 642 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 1/75 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + + T P ++ V ++ L G SK Sbjct: 361 WIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVNNLKYGTGYGTSK 419 Query: 209 RAAEQVAAAEVLKRE 223 + A+ AA E L+ Sbjct: 420 KQAKSEAARETLEIL 434 >gi|102139807|gb|ABF69992.1| double-stranded RNA-binding (DsRBD) domain-containing protein [Musa acuminata] Length = 610 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 24/49 (48%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T RSGP H P FT VE++G++ +K+ A++ AA Sbjct: 106 YTTVRSGPGHTPIFTCTVELAGMSFTGDPAKTKKQAQKNAAMAAWSALK 154 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223 GPDH PRF V +G A + R AE AA L Sbjct: 25 EGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHSAAEVALNTL 68 >gi|87117514|gb|ABD20059.1| Rnc [Shigella boydii] Length = 178 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 3/162 (1%) Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 +I+ L++ F EG++S +LV T +++ARE +L +R+ K Sbjct: 1 SYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60 Query: 112 TSIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 SI AD VE+LI ++LD I + + G ++D KT LQE+ + Sbjct: 61 ESILADTVEALIGGVFLDSDIRTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210 P Y V G HD FT+ ++SGL P G S+R Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162 >gi|18656508|gb|AAL77809.1|AF389451_16 ribonuclease-like protein [Tiger frog virus] Length = 371 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 72/217 (33%), Gaps = 17/217 (7%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVRF 75 R L K T S++ ++YE LE +GD + + F + ++ Sbjct: 25 RDLWNKVFTPKSVN--PDDNYEALEIVGDGVASYFFPSYFLKRFPQLNSPKGVKTVARLK 82 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 S ++ S +A L FIR S S S+ D E+ + A+ + E + Sbjct: 83 IYYGSKKSFSSIADSLGFWKFIR--SGPMPVNPSTRESLLEDTFEAFLGAVCMAVDDEYS 140 Query: 136 GT-FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD----HDPRFT 190 + + + G D H T Sbjct: 141 IDGLGAVVAYKIMADIFDDMDISLEYTALFDTVTRLKELMDVKKDVLGGDAVYNHMGDTT 200 Query: 191 VVVEISGLAPAQGMDCSKRA-AEQVA--AAEVLKREG 224 V + ++G + KR A++ A A ++L+REG Sbjct: 201 V-ITLNGRVIGKATGAIKRDRAKEAAGQALDLLRREG 236 >gi|302793885|ref|XP_002978707.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii] gi|300153516|gb|EFJ20154.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii] Length = 675 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L + + GV T RSGP H P FT V + G+ +K+ AE+ AA Sbjct: 91 YKNLLQETAQRAGVPLPIYTTVRSGPGHLPVFTCTVGVGGMIFTGEAAKTKKQAEKNAAM 150 Query: 218 EVLKREG 224 Sbjct: 151 TAWSSLK 157 >gi|302805769|ref|XP_002984635.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii] gi|300147617|gb|EFJ14280.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii] Length = 190 Score = 51.5 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L + + GV T RSGP H P FT V + G+ +K+ AE+ AA Sbjct: 88 YKNLLQETAQRAGVPLPIYTTVRSGPGHLPVFTCTVGVGGMIFTGEAAKTKKQAEKNAAM 147 Query: 218 EVLKREG 224 Sbjct: 148 TAWSSLK 154 >gi|225438954|ref|XP_002284222.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 542 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 51/185 (27%), Gaps = 12/185 (6%) Query: 21 SLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 +LL A H S + + RL FLG +L L + + + R Sbjct: 171 ALLYLAFQHPSCDRANARHVRSGHSRLWFLGQYVLELAFAEYFLQRYPRESPAPMRERVF 230 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 L+ Q + L + + D+ + + V +L A+YL G+ Sbjct: 231 ELIGKRNLPQWIKAASLQNLVFPFDDMDRLIRKEREPPVKSVFWALFGAIYLCYGMPEVY 290 Query: 137 T--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDPR 188 F R ++ + ++ P H Sbjct: 291 RVLFEVFGMDPEHEDCQPKLRRQLEDVDYVSVEFENNKLSWQDVAAYKPPEDALFAHPRL 350 Query: 189 FTVVV 193 F V Sbjct: 351 FRACV 355 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 5/87 (5%) Query: 18 ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + YERLE++G +I ++++ L A L Sbjct: 396 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQ 455 Query: 73 VRFNSLVSAETCSQVARELDLASFIRV 99 + L+ + C + R+ L FI Sbjct: 456 EKHRRLLMNKFCGRYLRDKYLHRFIIY 482 >gi|218184757|gb|EEC67184.1| hypothetical protein OsI_34054 [Oryza sativa Indica Group] Length = 506 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 T RSG H P FT VE++G+ +K+ AE+ AA+ L++ Sbjct: 98 YTTERSGLGHLPVFTCTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQL 148 >gi|7229534|gb|AAF42866.1|AF225925_1 staufen [Musca domestica] Length = 985 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L ++ +Y++T +GP H RFTV +++ + A+ +AA Sbjct: 290 PMCLVNDLARFNKISFQYRLTGENGPAHCKRFTVTLKLGDEEY-MAEGFKIKEAQHMAAK 348 Query: 218 EVLKR 222 E + + Sbjct: 349 EAILK 353 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H FT + G + K+ +++ AA ++L+ Sbjct: 603 DGPAHMRTFTTACIV-GQIVTEAEGTGKKISKKKAAQKMLEELK 645 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSG---PDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + T+L EW P +K+ +G +F V V L +G+ SK++A Sbjct: 724 NPITKLVEWCQHNKEKEPIFKIITEAGGKERARQRQFVVEVCTKDLTV-RGVGNSKKSAR 782 Query: 213 QVAAAEVLKREGIWT 227 + AA +L G+ T Sbjct: 783 RNAAQNMLLALGVDT 797 >gi|115482562|ref|NP_001064874.1| Os10g0480500 [Oryza sativa Japonica Group] gi|75261835|sp|Q9AV50|DRB6_ORYSJ RecName: Full=Double-stranded RNA-binding protein 6; AltName: Full=dsRNA-binding protein 5; Short=OsDRB5; AltName: Full=dsRNA-binding protein 6 gi|13384384|gb|AAK21352.1|AC024594_16 putative extensin [Oryza sativa Japonica Group] gi|31432702|gb|AAP54300.1| Double-stranded RNA binding motif family protein, expressed [Oryza sativa Japonica Group] gi|113639483|dbj|BAF26788.1| Os10g0480500 [Oryza sativa Japonica Group] gi|125575161|gb|EAZ16445.1| hypothetical protein OsJ_31914 [Oryza sativa Japonica Group] gi|215694820|dbj|BAG90011.1| unnamed protein product [Oryza sativa Japonica Group] Length = 514 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 T RSG H P FT VE++G+ +K+ AE+ AA+ L++ Sbjct: 106 YTTERSGLGHLPVFTCTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQL 156 >gi|326427167|gb|EGD72737.1| hypothetical protein PTSG_04466 [Salpingoeca sp. ATCC 50818] Length = 2717 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 4/101 (3%) Query: 6 YSTLEKRIGYAFA--NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + L + +G+ NR+LL +ALTH S ++ + E+L +G + LL Sbjct: 2120 IAPLAEHLGFTGPSCNRALLLEALTHRSFLNNQLGNNEKLALIGRLCVRLLCIDKFVQTQ 2179 Query: 64 DSAKE-GELSVRFNSLVSAE-TCSQVARELDLASFIRVSSD 102 D+A + +VS E + + +I S Sbjct: 2180 DNAPSVSSWDDICDEVVSTELLVQKAVDMFGMLPYILHDSG 2220 >gi|241779179|ref|XP_002399859.1| tar RNA-binding protein, putative [Ixodes scapularis] gi|215508538|gb|EEC17992.1| tar RNA-binding protein, putative [Ixodes scapularis] Length = 273 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE P Y+ G H+ F + ++ L+ G SKR A++ A Sbjct: 102 NPVGALQELCMKLRWRPPFYETVIEEGLPHERTFGISCLVNNLSE-MGKGKSKRLAKRQA 160 Query: 216 AAEVLK 221 A ++++ Sbjct: 161 AYKMIQ 166 >gi|281206201|gb|EFA80390.1| putative RNA helicase [Polysphondylium pallidum PN500] Length = 804 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 25/68 (36%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + EL F + +++ GP H P F + ++ SK+ AE Sbjct: 716 YPKFDFEELLSKCRVYFQLDTKFETKHVGGPPHQPEFICDLYLNNELKETCKGSSKKDAE 775 Query: 213 QVAAAEVL 220 + + L Sbjct: 776 DKVSRQAL 783 >gi|270003897|gb|EFA00345.1| hypothetical protein TcasGA2_TC003184 [Tribolium castaneum] Length = 1222 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 4/69 (5%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219 K +GP H RF V I G + G +K+ A+ AA + Sbjct: 7 FLHQFCQKTKKEQPQFEVRPTGPKHRQRFLCEVRIDGYSYVGAGNSTNKKDAQSNAARDF 66 Query: 220 ---LKREGI 225 L REGI Sbjct: 67 VSYLVREGI 75 >gi|91078338|ref|XP_973454.1| PREDICTED: similar to maleless protein [Tribolium castaneum] Length = 1220 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 4/69 (5%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219 K +GP H RF V I G + G +K+ A+ AA + Sbjct: 7 FLHQFCQKTKKEQPQFEVRPTGPKHRQRFLCEVRIDGYSYVGAGNSTNKKDAQSNAARDF 66 Query: 220 ---LKREGI 225 L REGI Sbjct: 67 VSYLVREGI 75 >gi|126722609|ref|NP_001075682.1| interferon-induced, double-stranded RNA-activated protein kinase [Oryctolagus cuniculus] gi|71068410|gb|AAZ23127.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Oryctolagus cuniculus] Length = 547 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E + GP RF I G+ +K+ A+Q+AA + Sbjct: 116 VNYEPCELWEQGP---KRFQYKCRIGLKVYGTGIGSTKQEAKQLAAKSAYHKI 165 >gi|301768411|ref|XP_002919630.1| PREDICTED: protein SON-like [Ailuropoda melanoleuca] Length = 2336 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2247 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2306 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2307 TAATVVLQAMGL 2318 >gi|297287594|ref|XP_001093086.2| PREDICTED: protein SON-like [Macaca mulatta] Length = 2140 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2051 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2110 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2111 TAATVVLQAMGL 2122 >gi|296491682|gb|DAA33715.1| SON DNA-binding protein [Bos taurus] Length = 2136 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2047 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2106 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2107 TAATVVLQAMGL 2118 >gi|296232103|ref|XP_002807816.1| PREDICTED: LOW QUALITY PROTEIN: protein SON-like [Callithrix jacchus] Length = 2360 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2271 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2330 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2331 TAATVVLQAMGL 2342 >gi|193787107|dbj|BAG52313.1| unnamed protein product [Homo sapiens] Length = 579 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 490 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 549 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 550 TAATVVLQAMGL 561 >gi|167427274|gb|ABZ80253.1| SON DNA-binding protein isoform F (predicted) [Callithrix jacchus] Length = 2454 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2365 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2424 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2425 TAATVVLQAMGL 2436 >gi|119630222|gb|EAX09817.1| SON DNA binding protein, isoform CRA_d [Homo sapiens] Length = 2482 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2393 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2452 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2453 TAATVVLQAMGL 2464 >gi|119630227|gb|EAX09822.1| SON DNA binding protein, isoform CRA_h [Homo sapiens] Length = 2459 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2429 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2430 TAATVVLQAMGL 2441 >gi|114683930|ref|XP_531438.2| PREDICTED: SON DNA-binding protein isoform 10 [Pan troglodytes] Length = 2459 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2429 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2430 TAATVVLQAMGL 2441 >gi|114683936|ref|XP_001165875.1| PREDICTED: similar to SON DNA binding protein isoform A isoform 7 [Pan troglodytes] Length = 2140 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2051 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2110 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2111 TAATVVLQAMGL 2122 >gi|74001159|ref|XP_857396.1| PREDICTED: similar to SON DNA-binding protein isoform A isoform 19 [Canis familiaris] Length = 2145 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2056 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2115 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2116 TAATVVLQAMGL 2127 >gi|74001165|ref|XP_535583.2| PREDICTED: similar to SON protein (SON3) (Negative regulatory element-binding protein) (NRE-binding protein) (DBP-5) (Bax antagonist selected in saccharomyces 1) (BASS1) isoform 2 [Canis familiaris] Length = 2464 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2375 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2434 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2435 TAATVVLQAMGL 2446 >gi|74001153|ref|XP_857275.1| PREDICTED: similar to SON DNA-binding protein isoform G isoform 16 [Canis familiaris] Length = 1442 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 1353 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 1412 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 1413 TAATVVLQAMGL 1424 >gi|139948494|ref|NP_001077163.1| SON DNA-binding protein [Bos taurus] gi|61966462|emb|CAG47115.1| SON DNA-binding protein [Bos taurus] Length = 2136 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2047 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2106 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2107 TAATVVLQAMGL 2118 >gi|17046373|gb|AAL34497.1|AF380179_1 SON DNA binding protein isoform A [Homo sapiens] Length = 2140 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 2051 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2110 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 2111 TAATVVLQAMGL 2122 >gi|36546|emb|CAA45282.1| son-a [Homo sapiens] Length = 1523 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 1363 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 1422 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 1423 TAATVVLQAMGL 1434 >gi|328857530|gb|EGG06646.1| hypothetical protein MELLADRAFT_63275 [Melampsora larici-populina 98AG31] Length = 400 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 4/162 (2%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 A + LE + Y F N++LL+K L + ++ +LE++GD +LGL + L Sbjct: 239 KASDLNALETSLKYRFHNKTLLQKVL----WPDPAERTFRKLEWIGDCLLGLWSAERLAE 294 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 ++ + ++ T + L ++ + V Sbjct: 295 MGTETQKKKGLGLAFIELNCNTTLAAWADRWLHPHKQLVKPKIGTGDKVCKASANMVECL 354 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 + G + + + + + ++ Sbjct: 355 VFVLFIDCGSVFGPESTFYQVLDRWFYNDKERNTVSQEHFTN 396 >gi|82582945|gb|ABB84398.1| interferon resistance protein [Orf virus] Length = 166 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 22/54 (40%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH PRFT + ISG A SK+ A A A L Sbjct: 102 MMTHRPLEFSETRAGGEDHCPRFTCTITISGKVVAVADGASKKLARHTACASAL 155 >gi|293334643|ref|NP_001168634.1| hypothetical protein LOC100382420 [Zea mays] gi|223949721|gb|ACN28944.1| unknown [Zea mays] Length = 623 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 16/35 (45%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F+V V + G+ ++ A+ AA + L+ Sbjct: 566 FSVEVLFNNEKIGIGVGKTRDEAQVQAAEKALQNL 600 >gi|326533226|dbj|BAJ93585.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 932 Score = 50.7 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 20/36 (55%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ V I G +G+ +++ A++ AA L+ Sbjct: 718 QFSIEVWIVGEKVGEGIGSTRKEAQRQAAEISLRNL 753 >gi|12849779|dbj|BAB28477.1| unnamed protein product [Mus musculus] Length = 313 Score = 50.7 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 1/103 (0%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + AA+ + V K K + + LQE A PEY ++ Sbjct: 90 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149 Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 GP H +T + + G S + A++ AA + L + Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASNKQAKRNAAEKFLAK 191 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 62 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100 >gi|226507212|ref|NP_001141877.1| hypothetical protein LOC100274020 [Zea mays] gi|194706274|gb|ACF87221.1| unknown [Zea mays] Length = 392 Score = 50.7 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 25/49 (51%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T RSGP H P F+ VE++GL+ A +K+ AE+ AA Sbjct: 106 YTTVRSGPGHSPVFSSTVELAGLSFAGDPARTKKQAEKNAAMAAWSSLK 154 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 7/58 (12%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAEQVAAAEVLKRE 223 + V R GPDH PRF V +G S R AE AA L R Sbjct: 14 CFSLPSYVCTREGPDHAPRFRAAVTFNGETF---EGPSGCTTLRQAEHAAAEVALARL 68 >gi|296085908|emb|CBI31232.3| unnamed protein product [Vitis vinifera] Length = 494 Score = 50.7 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 18/49 (36%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T +SG H P F VEI G +K+ AE AA Sbjct: 256 YSTEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLAEMNAAKAAYTHLK 304 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223 P T + GP H+P F V + GL+ + S + A+ AA ++ Sbjct: 16 NPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAAGLAIQYL 68 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 1/77 (1%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDC 206 ++ + + + K + GP H+ RF V I Sbjct: 149 CQTPEGMQHLYKTQLQTYAQKRNLPLPMYSFESIGPSHNCRFKSKVTIEEQTYESPDFFP 208 Query: 207 SKRAAEQVAAAEVLKRE 223 + + AE AA L Sbjct: 209 TLKDAEHAAAKLALMSL 225 >gi|225439221|ref|XP_002270719.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 581 Score = 50.7 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 18/49 (36%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T +SG H P F VEI G +K+ AE AA Sbjct: 329 YSTEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLAEMNAAKAAYTHLK 377 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223 P T + GP H+P F V + GL+ + S + A+ AA ++ Sbjct: 16 NPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAAGLAIQYL 68 Score = 43.0 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 15/51 (29%), Gaps = 1/51 (1%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 GP H+ RF V I + + AE AA L Sbjct: 248 PMYSFESIGPSHNCRFKSKVTIEEQTYESPDFFPTLKDAEHAAAKLALMSL 298 >gi|242062442|ref|XP_002452510.1| hypothetical protein SORBIDRAFT_04g027200 [Sorghum bicolor] gi|241932341|gb|EES05486.1| hypothetical protein SORBIDRAFT_04g027200 [Sorghum bicolor] Length = 934 Score = 50.7 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ V I G +G+ ++R A+ AA L+ Sbjct: 721 QFSIEVWIVGEKVGEGIGRTRREAQHKAAEMSLRNL 756 >gi|90078150|dbj|BAE88755.1| unnamed protein product [Macaca fascicularis] Length = 272 Score = 50.7 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G F + V++ A+G +K+ A++ AA +L+ G Sbjct: 7 GLPRRREFVMQVKVGNHT-AEGAGTNKKVAKRNAAENMLEILG 48 >gi|195373462|ref|XP_002046012.1| GM19663 [Drosophila sechellia] gi|194122928|gb|EDW44971.1| GM19663 [Drosophila sechellia] Length = 267 Score = 50.7 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 17/35 (48%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ V ++ L G SK+ A+ AA E L+ Sbjct: 25 YSATVSVNNLKYGTGYGTSKKQAKSEAARETLEIL 59 >gi|301170812|dbj|BAJ12020.1| virus interferon resistance [Orf virus] gi|301170814|dbj|BAJ12021.1| virus interferon resistance [Orf virus] gi|301170820|dbj|BAJ12024.1| virus interferon resistance [Orf virus] gi|301170822|dbj|BAJ12025.1| virus interferon resistance [Orf virus] gi|301170834|dbj|BAJ12031.1| virus interferon resistance [Orf virus] gi|301170836|dbj|BAJ12032.1| virus interferon resistance [Orf virus] gi|301170838|dbj|BAJ12033.1| virus interferon resistance [Orf virus] gi|301170842|dbj|BAJ12035.1| virus interferon resistance [Orf virus] gi|301170844|dbj|BAJ12036.1| virus interferon resistance [Orf virus] gi|301170846|dbj|BAJ12037.1| virus interferon resistance [Orf virus] gi|301170848|dbj|BAJ12038.1| virus interferon resistance [Orf virus] gi|301170850|dbj|BAJ12039.1| virus interferon resistance [Orf virus] Length = 183 Score = 50.7 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 22/54 (40%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH PRFT + ISG A SK+ A A + L Sbjct: 119 MMTHRPLEFCETRSGGEDHCPRFTCTITISGKVVAAADGASKKLARHTACSSAL 172 >gi|37594908|gb|AAQ94313.1| interferon resistance protein [Orf virus] Length = 183 Score = 50.7 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 22/54 (40%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH PRFT + ISG A SK+ A A + L Sbjct: 119 MMTHRPLEFCETRSGGEDHCPRFTCTITISGKVVAAADGASKKLARHTACSSAL 172 >gi|37594906|gb|AAQ94312.1| interferon resistance protein [Orf virus] Length = 183 Score = 50.7 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 22/54 (40%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH PRFT + ISG A SK+ A A + L Sbjct: 119 MMTHRPLEFCETRSGGEDHCPRFTCTITISGKVVAAADGASKKLARHTACSSAL 172 >gi|258615164|ref|ZP_05712934.1| ribonuclease III [Enterococcus faecium DO] Length = 93 Score = 50.7 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 25/59 (42%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 D KT+LQE V+ EY++ GP H+ F + V + G SK+ Sbjct: 21 FSHEMDHKTKLQEVLQKSGDVSIEYRLINEEGPAHERVFWIEVYVDDQLIGTGQGKSKK 79 >gi|221236967|gb|ACM16036.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Aotus trivirgatus] Length = 549 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E + +GP F ++ G +K+ A+Q+AA + Sbjct: 116 VNYEQCASGVNGPAG---FHYKCKVGQKEYGIGTGSTKQEAKQMAAKLAYLQI 165 Score = 36.4 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 12/26 (46%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMD 205 SGP HD RFT V I G + Sbjct: 32 NSGPPHDRRFTFQVIIDGREFPEAEG 57 >gi|145349136|ref|XP_001418996.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579226|gb|ABO97289.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 656 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 53/196 (27%), Gaps = 19/196 (9%) Query: 33 SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD 92 H E +GD+I G + + + GE + +++ + S + +Q+ E Sbjct: 381 QHVSTSDVEMHALIGDKIFGAALLEEIVGNRLCKDTGEATRQYSEVASNASMAQLVSE-- 438 Query: 93 LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152 + A + + G + + + + Sbjct: 439 -------CLPQHVQGGREVEEHSAGTLVEAAVYMVNQMA---GGPQAVQQLAKWFVYNVV 488 Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGL------APAQGMD 205 + + G DH+P F + Sbjct: 489 VEGKKQRRFTNPKGLIIELNGHTMSHRIEGTADHEPAFQARCVWPKEAPREQQRETTAIG 548 Query: 206 CSKRAAEQVAAAEVLK 221 SK+ AE AA E+L+ Sbjct: 549 KSKKEAEANAAKEMLE 564 >gi|328708088|ref|XP_001949570.2| PREDICTED: 39S ribosomal protein L44, mitochondrial-like [Acyrthosiphon pisum] Length = 348 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 74/236 (31%), Gaps = 21/236 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI---------------SHSYQESYERLEFLGDRI 50 KR+G F N +LL++ALT S + L G Sbjct: 62 IYAFSKRLGEEFNN-NLLQQALTERSYIIREEERQKNVGIEQPTLNLSDNKELVSKGSDF 120 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + ++ L E + L S ET S V+ + + I + Sbjct: 121 IDDIVKRYLRTVLPRLPEEGIIGIHKYLTSIETLSHVSFHIGTSELILCAEF--PVEKPT 178 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 ++++ ++ +LI + F+ + L + L E Sbjct: 179 LSNVLKSIIAALIESSGDSRAALFVRDFIITQIADKDLHQFWEPEEPIKLLSEILARDGI 238 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLA--PAQGMDCSKRAAEQVAAAEVLKRE 223 +PE ++ SG + F V + G + A ++AA + L++ Sbjct: 239 QSPEPRLIGCSGKNTILACFRVGLYTPDNKRMIGLGFGETVDIAHEMAARDSLRQL 294 >gi|224130800|ref|XP_002328379.1| predicted protein [Populus trichocarpa] gi|222838094|gb|EEE76459.1| predicted protein [Populus trichocarpa] Length = 159 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 T RSGP H P F+ VE++G++ +K+ A++ AA Sbjct: 106 YTTIRSGPGHVPVFSCNVELAGMSFTGESARTKKQAQKNAAMAAWSALK 154 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQVAAAEVLKRE 223 R GPDH PRF V +G S R AE AA L Sbjct: 14 CFNLPSYSCIREGPDHAPRFKSTVNFNGETFESPTFYSTLRLAEHAAAEVALNTL 68 >gi|33415071|gb|AAQ18043.1| double-stranded RNA-binding protein [Orf virus] Length = 183 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 22/54 (40%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH PRFT + ISG + SK+ A A + L Sbjct: 119 MMTRRPLEFCETRSGGEDHCPRFTCTITISGKVVSVADGASKKLARHTACSSAL 172 >gi|31096345|gb|AAP43510.1| E3L-like protein [Orf virus] gi|41018507|gb|AAR98115.1| ORF020 dsRNA-binding PKR inhibitor [Orf virus] Length = 183 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 23/54 (42%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + E+ T G DH PRFT + ISG + SK+ A A + L Sbjct: 119 MMTRRSLEFCETRSGGEDHCPRFTCTITISGKVVSVADGASKKLARHTACSSAL 172 >gi|3021546|emb|CAA10953.1| OV20.0L [Orf virus] Length = 183 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 23/54 (42%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + E+ T G DH PRFT + ISG + SK+ A A + L Sbjct: 119 MMTRRSLEFCETRSGGEDHCPRFTCTITISGKVVSVADGASKKLARHTACSSAL 172 >gi|222641889|gb|EEE70021.1| hypothetical protein OsJ_29958 [Oryza sativa Japonica Group] Length = 325 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 T RSGP H P F+ VE++G++ A +K+ AE+ AA LK+ Sbjct: 106 YTTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQM 156 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 + V R GPDH PRF V +G + R AE AA L R Sbjct: 14 CFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAAEVALARL 68 >gi|215764986|dbj|BAG86683.1| unnamed protein product [Oryza sativa Japonica Group] Length = 357 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 T RSGP H P F+ VE++G++ A +K+ AE+ AA LK+ Sbjct: 106 YTTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQM 156 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 + V R GPDH PRF V +G + R AE AA L R Sbjct: 14 CFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAAEVALARL 68 >gi|166240125|ref|XP_647462.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4] gi|165988755|gb|EAL73658.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4] Length = 1385 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 21/46 (45%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 T G +H+ F +V ++G +K+ +E+ A +L+ Sbjct: 27 YHTEYKGSEHNKDFKSIVIVNGKEIESDWKKTKKESEKDCAKRILE 72 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 61/180 (33%), Gaps = 22/180 (12%) Query: 18 ANRSLLEKALTHSSIS----------------HSYQESYERLEFLGDRILGLLISTLLFN 61 + +L + TH S Y +RLEFLGD +L L+ + LF Sbjct: 1056 KSAKILREVFTHPSTKTIPKRTLTQLGIFGKYQPYLGDNQRLEFLGDSVLKLVSTIYLFF 1115 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + EG LS + + V++ L L +R +++ QADV+E+ Sbjct: 1116 KYPKMSEGFLSQTRSDFTKNDHLLDVSKRLGLEEILRFTTEEEFR------KPQADVIEA 1169 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 LI A+Y+D G A + E + + S Sbjct: 1170 LIGAVYIDRGFFEAYKLTVCWIFDEPDAEYPIYNTKFEETLAHQEIRAFLDGIGVHISHS 1229 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 61/161 (37%), Gaps = 5/161 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 IG ++ SLLE+AL HS +SY+RLE++GD +L +S L+ F Sbjct: 1215 IRAFLDGIGVHISHSSLLEEALCFPYSFHSASKSYQRLEYVGDAVLDFFVSDFLYATFPL 1274 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A+EG+L+ + LV S ++R+L + + + D +ES I Sbjct: 1275 AQEGQLTDYRSRLVRNSNLSSISRKL-----CLPPTVSKGIRDTLPIKKLGDYLESFIGC 1329 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 ++D T Y H Sbjct: 1330 CFVDTTQSFEYTKSLVYKYLDLRIDNPLFEFPSRSAYLSIH 1370 >gi|125564316|gb|EAZ09696.1| hypothetical protein OsI_31979 [Oryza sativa Indica Group] Length = 357 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 T RSGP H P F+ VE++G++ A +K+ AE+ AA LK+ Sbjct: 106 YTTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQM 156 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 + V R GPDH PRF V +G + R AE AA L R Sbjct: 14 CFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAAEVALARL 68 >gi|259490370|ref|NP_001159196.1| hypothetical protein LOC100304282 [Zea mays] gi|223942573|gb|ACN25370.1| unknown [Zea mays] Length = 286 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 20/36 (55%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ V I G +G+ ++R A++ AA L+ Sbjct: 72 QFSIEVWIVGEKFGEGIGRTRREAQRQAAEMSLRNL 107 >gi|239790094|dbj|BAH71631.1| ACYPI001280 [Acyrthosiphon pisum] Length = 348 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 73/236 (30%), Gaps = 21/236 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI---------------SHSYQESYERLEFLGDRI 50 KR+G F N LL++ALT S + L G Sbjct: 62 IYAFSKRLGEEFNN-DLLQQALTERSYIIREEERQKNVGIEQPTLNLSDNKELVSKGSDF 120 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + ++ L E + L S ET S V+ + + I + Sbjct: 121 IDDIVKRYLRTVLPRLPEEGIIGIHKYLTSIETLSHVSFHIGTSELILCAEF--PVEKPT 178 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 ++++ ++ +LI + F+ + L + L E Sbjct: 179 LSNVLKSIIAALIESSGDSRAALFVRDFIITQIADKDLHQFWEPEEPIKLLSEILARDGI 238 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLA--PAQGMDCSKRAAEQVAAAEVLKRE 223 +PE ++ SG + F V + G + A ++AA + L++ Sbjct: 239 QSPEPRLIGCSGKNTILACFRVGLYTPDNKRMIGLGFGETVDIAHEMAARDSLRQL 294 >gi|222616496|gb|EEE52628.1| hypothetical protein OsJ_34969 [Oryza sativa Japonica Group] Length = 781 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220 TF+ GP H+P F V I+ + +++AAEQ AA L Sbjct: 52 YHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVAL 97 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 14/32 (43%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F VEI G+ +K+ AE AA L Sbjct: 506 FICTVEIGGIQYIGAAARTKKDAEIKAARTAL 537 >gi|222615377|gb|EEE51509.1| hypothetical protein OsJ_32675 [Oryza sativa Japonica Group] Length = 830 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220 TF+ GP H+P F V I+ + +++AAEQ AA L Sbjct: 52 YHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVAL 97 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 14/32 (43%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F VEI G+ +K+ AE AA L Sbjct: 506 FICTVEIGGIQYIGAAARTKKDAEIKAARTAL 537 >gi|218186287|gb|EEC68714.1| hypothetical protein OsI_37196 [Oryza sativa Indica Group] Length = 2010 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220 TF+ GP H+P F V I+ + +++AAEQ AA L Sbjct: 1287 YHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVAL 1332 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 14/32 (43%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F VEI G+ +K+ AE AA L Sbjct: 1735 FICTVEIGGIQYIGAAARTKKDAEIKAARTAL 1766 >gi|218186280|gb|EEC68707.1| hypothetical protein OsI_37189 [Oryza sativa Indica Group] Length = 474 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220 TF+ GP H+P F V I+ + +++AAEQ AA L Sbjct: 52 YHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVAL 97 >gi|255946916|ref|XP_002564225.1| Pc22g01810 [Penicillium chrysogenum Wisconsin 54-1255] gi|211591242|emb|CAP97469.1| Pc22g01810 [Penicillium chrysogenum Wisconsin 54-1255] Length = 151 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 4/140 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 LEK+I Y F +R LL +AL S + Q+ + L GD +L L+++ + ++ Sbjct: 15 IEVLEKKIQYRFVDRELLREALQAS--TDRNQDGNKTLALFGDLVLDLVLA--ISGRKEN 70 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 G++ S+ +L + FI + + M + +V ++ Sbjct: 71 KPRGKIKEMSTQKAGNVHLSKQGFDLGIDKFIVKNPSQTVVGINVMATTMEAIVGAVYLD 130 Query: 126 LYLDGGIEVAGTFVDKYWKQ 145 Sbjct: 131 CNKQIAPCADVMVALGLSWP 150 >gi|198452925|ref|XP_001358999.2| GA14761 [Drosophila pseudoobscura pseudoobscura] gi|198132136|gb|EAL28142.2| GA14761 [Drosophila pseudoobscura pseudoobscura] Length = 651 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 1/75 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + + T P ++ +V ++ L G SK Sbjct: 371 WIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSAIVSVNNLKYGTGYGTSK 429 Query: 209 RAAEQVAAAEVLKRE 223 + A+ AA E L+ Sbjct: 430 KQAKSEAARETLEIL 444 >gi|195144392|ref|XP_002013180.1| GL23989 [Drosophila persimilis] gi|194102123|gb|EDW24166.1| GL23989 [Drosophila persimilis] Length = 387 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 1/75 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + + T P ++ +V ++ L G SK Sbjct: 107 WIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSAIVSVNNLKYGTGYGTSK 165 Query: 209 RAAEQVAAAEVLKRE 223 + A+ AA E L+ Sbjct: 166 KQAKSEAARETLEIL 180 >gi|189190408|ref|XP_001931543.1| double-strand-specific ribonuclease Pac1 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973149|gb|EDU40648.1| double-strand-specific ribonuclease Pac1 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 362 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 72/210 (34%), Gaps = 25/210 (11%) Query: 23 LEKA-LTHSSI-----------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 L +A TH S YERLE LGD + L+ S L+N F E Sbjct: 127 LHEAVFTHRSAIFDPSIPGSALGQDLSLDYERLELLGDAYIELIASRALYNRFPHVDVPE 186 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL-- 128 L + LV T + + ++ + K + AD+VE+ +AA+ L Sbjct: 187 LCMWRERLVENSTLGKFSHAYGFPDRLKHRAMWDKTS-KQYQKVVADIVEAYVAAVVLSD 245 Query: 129 -DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD- 186 D G E A ++ + W + L + + E G + +D Sbjct: 246 PDNGFETAEAWLTELWAPQLLGFREKIIENPQARNELNRLVLGKDVKLITKEEKPMSYDE 305 Query: 187 ---PRFTVVVEISGLAP-----AQGMDCSK 208 + + + ++G G +K Sbjct: 306 NSIQCYYIGIYLTGWGYKDEWLGSGHGQNK 335 >gi|115483791|ref|NP_001065557.1| Os11g0109900 [Oryza sativa Japonica Group] gi|122221791|sp|Q0IV63|DRB7_ORYSJ RecName: Full=Double-stranded RNA-binding protein 7; AltName: Full=dsRNA-binding protein 7 gi|108863922|gb|ABG22335.1| Double-stranded RNA binding motif family protein, expressed [Oryza sativa Japonica Group] gi|113644261|dbj|BAF27402.1| Os11g0109900 [Oryza sativa Japonica Group] gi|215686684|dbj|BAG88937.1| unnamed protein product [Oryza sativa Japonica Group] gi|215768461|dbj|BAH00690.1| unnamed protein product [Oryza sativa Japonica Group] Length = 473 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220 TF+ GP H+P F V I+ + +++AAEQ AA L Sbjct: 52 YHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVAL 97 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 14/32 (43%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F VEI G+ +K+ AE AA L Sbjct: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTAL 180 >gi|115486946|ref|NP_001065960.1| Os12g0109900 [Oryza sativa Japonica Group] gi|122234185|sp|Q0IQN6|DRB8_ORYSJ RecName: Full=Double-stranded RNA-binding protein 8; AltName: Full=dsRNA-binding protein 1; Short=OsDRB1; AltName: Full=dsRNA-binding protein 8 gi|108862090|gb|ABG21849.1| Double-stranded RNA binding motif family protein, expressed [Oryza sativa Japonica Group] gi|113648467|dbj|BAF28979.1| Os12g0109900 [Oryza sativa Japonica Group] Length = 424 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220 TF+ GP H+P F V I+ + +++AAEQ AA L Sbjct: 52 YHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVAL 97 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 14/32 (43%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F VEI G+ +K+ AE AA L Sbjct: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTAL 180 >gi|62912408|gb|AAY21792.1| dsRNA binding protein RBP [Oryza sativa Japonica Group] Length = 410 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220 TF+ GP H+P F V I+ + +++AAEQ AA L Sbjct: 52 YHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVAL 97 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 14/32 (43%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F VEI G+ +K+ AE AA L Sbjct: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTAL 180 >gi|9229939|dbj|BAB00641.1| dsRNA-binding protein ODB1 [Oryza sativa Japonica Group] Length = 425 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220 TF+ GP H+P F V I+ + +++AAEQ AA L Sbjct: 52 YHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVAL 97 >gi|218194135|gb|EEC76562.1| hypothetical protein OsI_14382 [Oryza sativa Indica Group] Length = 176 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 3/135 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +TL+ +I Y F LL +A+TH+S S + L LG + Sbjct: 34 LATLQNQIAYRFHAPDLLRRAMTHASYSRENGRA---LAVLGLAASQSAAALRALAADHD 90 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A +S R C A + + S +RV++ + + ++ ++ Sbjct: 91 ASASPVSRRARDASGEAACVAAAARVGIPSIVRVAAGTKPTAPPVVCGALRALIGAVAVD 150 Query: 126 LYLDGGIEVAGTFVD 140 E + Sbjct: 151 ANSTHAAEEVFWKLH 165 >gi|156554791|ref|XP_001606035.1| PREDICTED: similar to staufen [Nasonia vitripennis] Length = 587 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 +G H F + G SK+ +++ AA +L+ Sbjct: 211 VSETGKPHIRTFMTRCTVGDKV-TLGEGSSKKVSKKRAAELMLEELK 256 >gi|208690893|gb|ACI31222.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Saguinus labiatus] Length = 552 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E + +GP+ F ++ G +K+ A+Q+AA + Sbjct: 116 VNYEQCASGVNGPEG---FHYKCKVGQKEYGIGTGSTKQEAKQLAAKLAYLQI 165 Score = 40.3 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 13/28 (46%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I G + S Sbjct: 32 NSGPPHDRRFTFQVIIDGREFPEAEGRS 59 >gi|321468306|gb|EFX79291.1| hypothetical protein DAPPUDRAFT_24493 [Daphnia pulex] Length = 254 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE + P Y + +G H+ F + + G+ SK+ A++ A Sbjct: 88 NPVGNLQELCISHRWAPPSYVLEGENGLPHEREFVITCVVENHQE-IGVGKSKKLAKRQA 146 Query: 216 AAEV 219 A + Sbjct: 147 AYRM 150 >gi|170051834|ref|XP_001861946.1| R2D2 [Culex quinquefasciatus] gi|167872902|gb|EDS36285.1| R2D2 [Culex quinquefasciatus] Length = 314 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 E+++ + PE++ SGP H P F + + +G+ +K+ A+QVA E Sbjct: 101 MEVRDICVQRNFEVPEFECVRSSGPSHAPEFEFECRVGNIVR-RGVHNTKKGAKQVACNE 159 Query: 219 VLKRE 223 +LK Sbjct: 160 MLKTL 164 Score = 37.2 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F+ V G G SK+ ++ AA +LK Sbjct: 41 AKIFSTSVTALGQT-CVGHGRSKKDSKHAAALHMLKLL 77 >gi|156842019|ref|XP_001644379.1| hypothetical protein Kpol_1064p1 [Vanderwaltozyma polyspora DSM 70294] gi|156115021|gb|EDO16521.1| hypothetical protein Kpol_1064p1 [Vanderwaltozyma polyspora DSM 70294] Length = 377 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 1/73 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKR 209 + EL + P ++ SG P F + V +G S + Sbjct: 284 MFQFENPTRELATLCRREGFEQPISRLLAESGRLSKAPVFIIGVFSGNEKLGEGFGSSLK 343 Query: 210 AAEQVAAAEVLKR 222 A+ AA + L + Sbjct: 344 EAKARAATDALMK 356 >gi|115640588|ref|XP_787414.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115965191|ref|XP_001180563.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 878 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 1/78 (1%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + L + P+Y++ GP H+ F+V + + S Sbjct: 97 NNMANTKEKTSMCLLNELARFNKLQPKYELVSEKGPPHEKIFSVCLTLGPQKYDS-SGAS 155 Query: 208 KRAAEQVAAAEVLKREGI 225 + A+ AAA L++ G+ Sbjct: 156 IKKAQHGAAASALEKCGL 173 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G H F + + G + SK+ A++ AA +L + Sbjct: 469 LDERGQPHLKIFKLQCTV-GEFNTESEGPSKKDAKRKAAELMLPKLK 514 >gi|158341043|ref|YP_001522210.1| exoribonuclease II [Acaryochloris marina MBIC11017] gi|158311284|gb|ABW32896.1| exoribonuclease II [Acaryochloris marina MBIC11017] Length = 623 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/186 (8%), Positives = 53/186 (28%), Gaps = 5/186 (2%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 + LE+L D + ++++ + + S + + + + Sbjct: 426 QVLEYLEDHLYD--AASIVSIALNQTEAWHSSAYVEVSHEPPFVTWIEILIGEQLWTTAK 483 Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160 + + +++ + + A + K R+ + Sbjct: 484 PGISMNKTGAKHQACLAWLKAKFESSLVPPEHREAPPIPQPSAPKPPPVIHKLRQYQEGH 543 Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV--EISGLAP-AQGMDCSKRAAEQVAAA 217 + ++ +H+ + ++ G+ SK+ A+ AA Sbjct: 544 NCLSLLMEICQGFQWPQAEFEIVEHEQGYHCECRLKVDNEVITGSGIASSKKTAKHRAAR 603 Query: 218 EVLKRE 223 V+++ Sbjct: 604 PVVEQL 609 >gi|302697477|ref|XP_003038417.1| hypothetical protein SCHCODRAFT_103556 [Schizophyllum commune H4-8] gi|300112114|gb|EFJ03515.1| hypothetical protein SCHCODRAFT_103556 [Schizophyllum commune H4-8] Length = 74 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 20/64 (31%) Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + + GP+ +TV I G +K A+ AA + L Sbjct: 9 NHFQGLNQHAAVSWAERQAPGPNGTVVWTVKCNIRGETKGTASAPNKNTAKIEAAKQALA 68 Query: 222 REGI 225 G+ Sbjct: 69 ALGV 72 >gi|255542426|ref|XP_002512276.1| hypothetical protein RCOM_1429110 [Ricinus communis] gi|223548237|gb|EEF49728.1| hypothetical protein RCOM_1429110 [Ricinus communis] Length = 568 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKRE 223 T RSGP H P F+ VE++G++ +K+ A++ AA LKR Sbjct: 106 YTTVRSGPGHVPVFSCTVELAGMSFTGEPARTKKQAQKNAAMAAWSALKRL 156 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYSCIREGPDHAPRFKATVNFNGETFESPAFCSTLRQAEHAAAEVALNTL 68 >gi|74001137|ref|XP_856935.1| PREDICTED: similar to SON DNA-binding protein isoform A isoform 9 [Canis familiaris] Length = 152 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 63 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 122 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 123 TAATVVLQAMGL 134 >gi|76157448|gb|ABA40474.1| SJCHGC03811 protein [Schistosoma japonicum] Length = 132 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 5/80 (6%) Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ---- 202 + ++ A+F T +GP HD F V V IS + Sbjct: 1 MMFDRVTSMNSSPVFILNKRARFLNTTLSWTCKENGPYHDKVFHVNVVISHKSLNISETY 60 Query: 203 -GMDCSKRAAEQVAAAEVLK 221 G S + A+++AA L+ Sbjct: 61 FGTGSSIKKAKRMAADTALQ 80 >gi|323336239|gb|EGA77510.1| Mrpl3p [Saccharomyces cerevisiae Vin13] Length = 390 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 2/109 (1%) Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 ++ ++ A V D ++ + EL + P Sbjct: 261 RSIIAAIWAVTEQKDSQAVYRFIDDHIMSRKLDITKMFQFEQPTRELAMLCRREGLEKPV 320 Query: 175 YKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K+ SG P F V V +G S + A+ AA + L + Sbjct: 321 SKLVAESGRLSKSPVFIVHVFSGEETLGEGYGSSLKEAKARAATDALMK 369 >gi|323332013|gb|EGA73424.1| Mrpl3p [Saccharomyces cerevisiae AWRI796] Length = 390 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 2/109 (1%) Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 ++ ++ A V D ++ + EL + P Sbjct: 261 RSIIAAIWAVTEQKDSQAVYRFIDDHIMSRKLDITKMFQFEQPTRELAMLCRREGLEKPV 320 Query: 175 YKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K+ SG P F V V +G S + A+ AA + L + Sbjct: 321 SKLVAESGRLSKSPVFIVHVFSGEETLGEGYGSSLKEAKARAATDALMK 369 >gi|323303562|gb|EGA57353.1| Mrpl3p [Saccharomyces cerevisiae FostersB] Length = 390 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 2/109 (1%) Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 ++ ++ A V D ++ + EL + P Sbjct: 261 RSIIAAIWAVTEQKDSQAVYRFIDDHIMSRKLDITKMFQFEQPTRELAMLCRREGLEKPV 320 Query: 175 YKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K+ SG P F V V +G S + A+ AA + L + Sbjct: 321 SKLVAESGRLSKSPVFIVHVFSGEETLGEGYGSSLKEAKARAATDALMK 369 >gi|312374421|gb|EFR21981.1| hypothetical protein AND_15950 [Anopheles darlingi] Length = 306 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 ++++ + PE+++ GP H P F I + +G +K+ A+Q+A E+ Sbjct: 115 QVRDICVQRNFPLPEFELVRSYGPSHAPVFEFECRIRDIVR-RGSHSTKKGAKQIACQEM 173 Query: 220 LKRE 223 +K Sbjct: 174 IKTL 177 >gi|6323666|ref|NP_013737.1| Mrpl3p [Saccharomyces cerevisiae S288c] gi|1350789|sp|P36516|RM03_YEAST RecName: Full=54S ribosomal protein L3, mitochondrial; AltName: Full=YmL3; Flags: Precursor gi|798935|emb|CAA89127.1| Mrlp3p [Saccharomyces cerevisiae] gi|51013573|gb|AAT93080.1| YMR024W [Saccharomyces cerevisiae] gi|151946185|gb|EDN64416.1| YmL30 [Saccharomyces cerevisiae YJM789] gi|190408263|gb|EDV11528.1| 60S ribosomal protein L3, mitochondrial precursor [Saccharomyces cerevisiae RM11-1a] gi|256273471|gb|EEU08405.1| Mrpl3p [Saccharomyces cerevisiae JAY291] gi|259148602|emb|CAY81847.1| Mrpl3p [Saccharomyces cerevisiae EC1118] gi|285814027|tpg|DAA09922.1| TPA: Mrpl3p [Saccharomyces cerevisiae S288c] Length = 390 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 2/109 (1%) Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 ++ ++ A V D ++ + EL + P Sbjct: 261 RSIIAAIWAVTEQKDSQAVYRFIDDHIMSRKLDITKMFQFEQPTRELAMLCRREGLEKPV 320 Query: 175 YKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K+ SG P F V V +G S + A+ AA + L + Sbjct: 321 SKLVAESGRLSKSPVFIVHVFSGEETLGEGYGSSLKEAKARAATDALMK 369 >gi|328720070|ref|XP_003246941.1| PREDICTED: hypothetical protein LOC100572663 [Acyrthosiphon pisum] Length = 474 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + A+G SK+ A+Q+AA+ +LK+ Sbjct: 53 FKYSVNLD-KFVAEGKGSSKKEAKQLAASNLLKKI 86 Score = 44.9 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + A+G SK+ A+ +AA+ +LK+ Sbjct: 291 FKYSVNLD-KFVAEGEATSKKEAKHLAASNLLKKI 324 Score = 40.7 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + A+G SKR A+ AA +LK+ Sbjct: 172 FKYSVNLD-KIVAEGEGFSKREAKLWAATNLLKKI 205 >gi|208690897|gb|ACI31224.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Lagothrix lagotricha] Length = 552 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%) Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP+ F ++ G +K+ A+Q+AA + Sbjct: 127 GPEG---FHYKCKVGQKEYGIGTGSTKQEAKQLAAKLAYLQI 165 Score = 40.3 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 13/28 (46%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I G + S Sbjct: 32 NSGPPHDRRFTFQVIIDGREFPEAEGRS 59 >gi|50897085|dbj|BAD34723.1| Dicer-related RNase III protein Dcr2p [Tetrahymena thermophila] Length = 1838 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 52/159 (32%), Gaps = 58/159 (36%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISH----------------------------- 34 ++ +E +GY F N +LL +A T SI Sbjct: 1528 VQLKEIESILGYTFQNINLLFQAFTLPSIESLCIQIPSLKNTNLNKLHQINNAIQKKENQ 1587 Query: 35 -----------------SYQESYE------------RLEFLGDRILGLLISTLLFNHFDS 65 ++S E RLEFLGD +L L+I LFN F + Sbjct: 1588 GTFEKIDQISKENQNKIYQKDSNEWENLKNYNLCNQRLEFLGDAVLDLIIVEYLFNKFPN 1647 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 + GEL+ SLV +T + FI S Sbjct: 1648 SDPGELTQMKTSLVQNKTLCLINLMKGFYKFIIGSIQHN 1686 >gi|218191244|gb|EEC73671.1| hypothetical protein OsI_08218 [Oryza sativa Indica Group] Length = 937 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 19/36 (52%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ V I G +G+ +++ A+ AA L+ Sbjct: 724 QFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNL 759 >gi|115447513|ref|NP_001047536.1| Os02g0639000 [Oryza sativa Japonica Group] gi|49388226|dbj|BAD25346.1| double-stranded RNA-binding domain (DsRBD)-containing protein-like [Oryza sativa Japonica Group] gi|49388720|dbj|BAD25901.1| double-stranded RNA-binding domain (DsRBD)-containing protein-like [Oryza sativa Japonica Group] gi|113537067|dbj|BAF09450.1| Os02g0639000 [Oryza sativa Japonica Group] gi|215695163|dbj|BAG90354.1| unnamed protein product [Oryza sativa Japonica Group] gi|222623318|gb|EEE57450.1| hypothetical protein OsJ_07667 [Oryza sativa Japonica Group] Length = 940 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 19/36 (52%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ V I G +G+ +++ A+ AA L+ Sbjct: 727 QFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNL 762 >gi|297818244|ref|XP_002877005.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata] gi|297322843|gb|EFH53264.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata] Length = 356 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 SGP H P F+ VE++G++ +K+ AE+ AA L++ Sbjct: 111 SGPGHIPTFSCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKM 156 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSAAEVALSAL 68 >gi|241643146|ref|XP_002409536.1| secreted protein, putative [Ixodes scapularis] gi|215501378|gb|EEC10872.1| secreted protein, putative [Ixodes scapularis] Length = 353 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 2/92 (2%) Query: 15 YAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 YAF ++ LL +AL H + + SYE L+F+G L +++ + + ++ + Sbjct: 192 YAFKDQDLLIRALLHPAKARQLGSSISYEPLDFIGHFALHFVLARHMVRNGTRKEKASMH 251 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 + E C+ +A + L ++ + Sbjct: 252 NLMTEALRQEACAFLAAKNHLDLYVFLDDGQE 283 >gi|79420704|ref|NP_189329.3| DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA binding [Arabidopsis thaliana] gi|145322916|ref|NP_001030779.2| DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA binding [Arabidopsis thaliana] gi|75273549|sp|Q9LJF5|DRB3_ARATH RecName: Full=Double-stranded RNA-binding protein 3; AltName: Full=dsRNA-binding protein 3; Short=AtDRB3 gi|11994159|dbj|BAB01188.1| unnamed protein product [Arabidopsis thaliana] gi|45773934|gb|AAS76771.1| At3g26932 [Arabidopsis thaliana] gi|62321583|dbj|BAD95129.1| putative protein [Arabidopsis thaliana] gi|332643724|gb|AEE77245.1| dsRNA-binding protein 3 [Arabidopsis thaliana] gi|332643725|gb|AEE77246.1| dsRNA-binding protein 3 [Arabidopsis thaliana] Length = 359 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 SGP H P F+ VE++G++ +K+ AE+ AA L++ Sbjct: 111 SGPGHIPTFSCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKM 156 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223 + R GPDH PRF V +G + R AE AA L Sbjct: 14 CFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSAAEVALSAL 68 >gi|296089027|emb|CBI38730.3| unnamed protein product [Vitis vinifera] Length = 1474 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 L+ I Y +L +ALT +S ++ YER E LGD L ++S LF + Sbjct: 1357 QLKDVINYPVPAAKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1413 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIR 98 EG+L+ +VS Q A L S+I+ Sbjct: 1414 EGQLTRMRQQMVSNMVLYQSALCKGLQSYIQ 1444 >gi|293335783|ref|NP_001169831.1| hypothetical protein LOC100383723 [Zea mays] gi|224031877|gb|ACN35014.1| unknown [Zea mays] Length = 310 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 20/36 (55%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ V I G +G+ ++R A++ AA L+ Sbjct: 96 QFSIEVWIVGEKVGEGIGRTRREAQRQAAEMSLRNL 131 >gi|326679494|ref|XP_686426.4| PREDICTED: double-stranded RNA-specific editase B2 [Danio rerio] Length = 743 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G F + V + G +G SK+ A++ AA L+ Sbjct: 296 QGKRAHRSFIMAVRVDGR-IFEGSGRSKKQAKRQAAVCALQAL 337 Score = 34.9 bits (78), Expect = 8.0, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +Y++ ++GP H P F++ VE++GL +G + Sbjct: 140 QYRMVSQTGPVHAPLFSIAVEVNGLTF-EGTGPT 172 >gi|94734595|emb|CAK10842.1| novel protein similar to vertebrate adenosine deaminase, RNA-specific, B2 (ADARB2) [Danio rerio] Length = 715 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G F + V + G +G SK+ A++ AA L+ Sbjct: 271 QGKRAHRSFIMAVRVDGR-IFEGSGRSKKQAKRQAAVCALQAL 312 Score = 34.9 bits (78), Expect = 8.0, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +Y++ ++GP H P F++ VE++GL +G + Sbjct: 115 QYRMVSQTGPVHAPLFSIAVEVNGLTF-EGTGPT 147 >gi|82582933|gb|ABB84392.1| interferon resistance protein [Orf virus] Length = 166 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 24/54 (44%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + E+ T G DH PRFT ++IS A+ SK+ A A A L Sbjct: 102 MMTHRSLEFCETRSGGEDHCPRFTCTIKISKKVVAEADGASKKLARYAACASAL 155 >gi|332019072|gb|EGI59604.1| Double-stranded RNA-binding protein Staufen-like protein 2 [Acromyrmex echinatior] Length = 358 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +Y + + G H FTV V + G +G K++A+Q AA ++L Sbjct: 134 QQRQIPTKDIQYDLIYDEGLPHKKIFTVKVSL-GSLCERGTGQCKKSAKQEAAKKMLLHL 192 Query: 224 G 224 Sbjct: 193 N 193 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ +F V + G SK+ A+ AA +L Sbjct: 30 NYQKQFICNVACA-KLITHGTGNSKKEAKHNAAKNMLSLL 68 >gi|147898439|ref|NP_001085043.1| hypothetical protein LOC432110 [Xenopus laevis] gi|47506884|gb|AAH70985.1| MGC78846 protein [Xenopus laevis] Length = 772 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 16/35 (45%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I+G+ G SK+ A+ AA L+ Sbjct: 541 FGASVIINGVTYGTGTASSKKLAKNKAARATLEIL 575 >gi|302771083|ref|XP_002968960.1| hypothetical protein SELMODRAFT_90770 [Selaginella moellendorffii] gi|300163465|gb|EFJ30076.1| hypothetical protein SELMODRAFT_90770 [Selaginella moellendorffii] Length = 128 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 7/126 (5%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 Y F + +LL+ ALTHSS S + L LG I+ + A + EL Sbjct: 2 YKFNDSTLLQDALTHSSYSRH---NNGPLHLLGVSIIRASVYKHYLAKNRDATKEELEAM 58 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 +SL S C++ A L L IR + + + A +L A+ +DG + Sbjct: 59 SSSLSSTTACARRASGLGLDKLIRADAPVD----RKSDKVLAVAFHALFGAIAMDGSADQ 114 Query: 135 AGTFVD 140 A + Sbjct: 115 AMSVFW 120 >gi|17046379|gb|AAL34500.1|AF380182_1 SON DNA binding protein isoform D [Homo sapiens] Length = 147 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + + PE+ + SGPDH F V I+G A +K+ A+ Sbjct: 58 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 117 Query: 214 VAAAEVLKREGI 225 AA VL+ G+ Sbjct: 118 TAATVVLQAMGL 129 >gi|116787066|gb|ABK24361.1| unknown [Picea sitchensis] Length = 346 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 24/54 (44%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + P + G H P FT +VEI+G A SK+ A AA + ++ Sbjct: 97 NMPPPSYKFSKEGEAHCPTFTAIVEINGAFYAGDPANSKKDATNKAACKAIRAI 150 >gi|226958738|ref|NP_001153011.1| DiGeorge syndrome critical region gene 8 [Xenopus (Silurana) tropicalis] gi|169261414|gb|ACA52287.1| DiGeorge syndrome critical region 8 [Xenopus tropicalis] Length = 772 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 541 FGASVIIDGVTYGTGTASSKKLAKNKAARATLEIL 575 >gi|170172601|ref|NP_001116221.1| microprocessor complex subunit DGCR8 [Danio rerio] gi|122890881|emb|CAM13120.1| novel protein [Danio rerio] Length = 782 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 551 FGASVIIDGVTYGTGTASSKKLAKNKAARATLEIL 585 >gi|47227705|emb|CAG09702.1| unnamed protein product [Tetraodon nigroviridis] Length = 842 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 586 FGASVIIDGVTYGTGTASSKKLAKNKAARATLEIL 620 >gi|326495676|dbj|BAJ85934.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 364 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223 T RSGP H P F VE++GL+ A +K+ AE+ AA LK+ Sbjct: 106 YTTVRSGPGHSPVFASSVELAGLSFAGDAARTKKQAEKNAAMTAWSALKQM 156 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 + V R GPDH PRF V +G + R AE AA L R Sbjct: 14 CFSLPSYVCTREGPDHAPRFKATVTFNGETFHGPTCCTTLRQAEHAAAEVALARL 68 >gi|82582929|gb|ABB84390.1| interferon resistance protein [Orf virus] Length = 166 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 21/54 (38%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH PRFT + ISG SK+ A A A L Sbjct: 102 MMTHRPLEFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHTACASAL 155 >gi|82582921|gb|ABB84386.1| interferon resistance protein [Orf virus] gi|82582923|gb|ABB84387.1| interferon resistance protein [Orf virus] Length = 166 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 21/54 (38%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH PRFT + ISG SK+ A A A L Sbjct: 102 MMTHRPLEFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHTACASAL 155 >gi|82582939|gb|ABB84395.1| interferon resistance protein [Orf virus] Length = 166 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 21/54 (38%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH PRFT + ISG SK+ A A A L Sbjct: 102 MMTHRPLEFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHTACASAL 155 >gi|82582937|gb|ABB84394.1| interferon resistance protein [Orf virus] Length = 166 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 21/54 (38%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH PRFT + ISG SK+ A A A L Sbjct: 102 MMTHRPLEFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHTACASAL 155 >gi|66822085|ref|XP_644397.1| hypothetical protein DDB_G0274077 [Dictyostelium discoideum AX4] gi|66823323|ref|XP_645016.1| hypothetical protein DDB_G0273051 [Dictyostelium discoideum AX4] gi|50057720|emb|CAC41976.2| putative RNaseIII [Dictyostelium discoideum] gi|60472520|gb|EAL70472.1| hypothetical protein DDB_G0274077 [Dictyostelium discoideum AX4] gi|60473215|gb|EAL71163.1| hypothetical protein DDB_G0273051 [Dictyostelium discoideum AX4] Length = 1203 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 25/153 (16%) Query: 16 AFANRS---LLEKALTHSSIS----------------HSYQESYERLEFLGDRILGLLIS 56 F N + +L + LTH S + + Y+RLEFLGD +L + S Sbjct: 882 KFKNNTNNQVLREVLTHPSTKVISERKPIEKDQFQSYRPFMKDYQRLEFLGDSVLKITSS 941 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116 LF FD+ EG LS + E ++++R + +R+++ A Sbjct: 942 LYLFKKFDNEGEGLLSKKREFYTKNEYLTELSRRIGFDYILRITTIGDHS------KPHA 995 Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 D++E+ I A+Y++ G + + ++ K+ + Sbjct: 996 DLIEAFIGAIYIECGFKDSFDWIIKWIFDNSYY 1028 Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%) Query: 41 ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100 ERLEFLGD +L +++ LF+ + +EG L+ + LV+ E S++ + Sbjct: 1102 ERLEFLGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNNENLSKILKSNKNIFSPSQQ 1161 Query: 101 SDLRKDVCSFMTSIQADVVESLI 123 + M + Sbjct: 1162 DSFKHFSVKRMGDHIESYIGGFY 1184 >gi|304307735|ref|NP_001182007.1| R2D2 protein [Bombyx mori] gi|300669731|dbj|BAJ11654.1| R2D2 [Bombyx mori] Length = 340 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + + K G PEY+ +SGP H F + G + SKR A+Q AA Sbjct: 4 PITVLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGESV-SASARSKREAKQEAAR 62 Query: 218 EVL 220 +L Sbjct: 63 AML 65 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 L+E EY + +GP H F+V I GL +KR A Q AAA++ Sbjct: 113 LKELCEEYKLPGVEYALVADTGPAHMRLFSVRASI-GLHSRDASGTTKRQARQKAAADL 170 >gi|3021544|emb|CAA10952.1| OV20.0L [Orf virus] Length = 183 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 23/54 (42%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + E+ T G DH PRFT + ISG A SK+ A A + L Sbjct: 119 MMTRRSLEFCETRSGGEDHCPRFTCTITISGKVVAAADGASKKLARHTACSSAL 172 >gi|242023479|ref|XP_002432161.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517543|gb|EEB19423.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 652 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 16/35 (45%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + VV I + G+ SK+ A+ AA L+ Sbjct: 409 YLAVVSIGNIQYGTGVGSSKKQAKHDAAKATLEIL 443 >gi|195049901|ref|XP_001992785.1| GH13466 [Drosophila grimshawi] gi|193899844|gb|EDV98710.1| GH13466 [Drosophila grimshawi] Length = 489 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + LQE + P Y+ G H+ FT+ I G SK+ A+++A Sbjct: 274 NPIGLLQEKCMQRRWPPPSYETETEVGLPHERLFTIACTILHYRE-VGKGKSKKIAKRLA 332 Query: 216 AAEVLKRE 223 A ++ R Sbjct: 333 AHKMWTRL 340 >gi|47225151|emb|CAF98778.1| unnamed protein product [Tetraodon nigroviridis] Length = 812 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F + V + G +G SK+ A+ AA L+ Sbjct: 287 RSFVMAVRVDGR-IFEGCGRSKKLAKNQAAQCALRAL 322 Score = 36.4 bits (82), Expect = 2.9, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +Y + ++GP H P F++ VE++GL +G + Sbjct: 116 QYHMVSQTGPVHAPVFSIAVEVNGLTF-EGTGPT 148 >gi|290462563|gb|ADD24329.1| Double-stranded RNA-specific editase 1 [Lepeophtheirus salmonis] Length = 296 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE-GI 225 F + V + G+ +G +K+ A++ A LK+ GI Sbjct: 252 IFVMSVTVDGVTF-EGEGKNKKDAKRNCALAALKKIYGI 289 Score = 38.8 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 FT + G + SK+ A+ + A ++ Sbjct: 91 FTAQCTVEGRDY-EASGPSKQMAKNLCAESAIQSL 124 >gi|195430156|ref|XP_002063122.1| GK21754 [Drosophila willistoni] gi|194159207|gb|EDW74108.1| GK21754 [Drosophila willistoni] Length = 1401 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 4/68 (5%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219 + + T +GP H RF V + + A G +K+ AE+ A+ + Sbjct: 5 SFLFEYCSKNHTEPKFEVRPTGPKHRQRFLCEVRVEKCSYVAVGNSTNKKDAEKNASRDF 64 Query: 220 ---LKREG 224 L R G Sbjct: 65 VNYLVRMG 72 Score = 34.9 bits (78), Expect = 8.5, Method: Composition-based stats. Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 5/79 (6%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGM 204 + + + + + GPDH F + I A+ Sbjct: 175 MHGNWTIENAKDRLNIYKQANNIRDDYKYTPVGPDHARSFMAELSIFVPALKRKVTARNT 234 Query: 205 DCSKRAAEQVAAAEVLKRE 223 +K++A + A ++++ Sbjct: 235 GSNKKSASKSCALSLVRQL 253 >gi|332262731|ref|XP_003280412.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 1 [Nomascus leucogenys] Length = 773 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576 >gi|301770469|ref|XP_002920627.1| PREDICTED: microprocessor complex subunit DGCR8-like [Ailuropoda melanoleuca] Length = 773 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576 >gi|297708300|ref|XP_002830907.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 1 [Pongo abelii] gi|297708302|ref|XP_002830908.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 2 [Pongo abelii] Length = 773 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576 >gi|302565592|ref|NP_001181679.1| microprocessor complex subunit DGCR8 [Macaca mulatta] gi|297260575|ref|XP_002798321.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 2 [Macaca mulatta] Length = 773 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576 >gi|296191370|ref|XP_002806593.1| PREDICTED: LOW QUALITY PROTEIN: microprocessor complex subunit DGCR8-like [Callithrix jacchus] Length = 773 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576 >gi|291413067|ref|XP_002722795.1| PREDICTED: DiGeorge syndrome critical region gene 8 [Oryctolagus cuniculus] Length = 773 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576 >gi|281353794|gb|EFB29378.1| hypothetical protein PANDA_009401 [Ailuropoda melanoleuca] Length = 753 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576 >gi|332634877|ref|NP_001193848.1| DiGeorge syndrome critical region gene 8 [Sus scrofa] Length = 773 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576 >gi|242821621|ref|XP_002487717.1| dsRNA-specific ribonuclease III, putative [Talaromyces stipitatus ATCC 10500] gi|218712638|gb|EED12063.1| dsRNA-specific ribonuclease III, putative [Talaromyces stipitatus ATCC 10500] Length = 129 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 15/130 (11%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + LE+ I Y F +R+LL +AL +Q +RL LGD+++ L++ + Sbjct: 1 MDCDGLERIIDYTFKDRNLLNEAL--------HQTQNKRLALLGDKVVALMLIDSWYQTG 52 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S + + S E + A + L +R R+ S T A E+++ Sbjct: 53 GSC--YDGNSLLQHAASNEAMANRAIQTHLKDMVR-----RQSHQSPSTHGLATDFEAVV 105 Query: 124 AALYLDGGIE 133 A+++D G + Sbjct: 106 GAVWIDCGKD 115 >gi|149758673|ref|XP_001488087.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8 [Equus caballus] Length = 773 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576 >gi|149019784|gb|EDL77932.1| DiGeorge syndrome critical region gene 8 (predicted), isoform CRA_b [Rattus norvegicus] Length = 620 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576 >gi|148665097|gb|EDK97513.1| DiGeorge syndrome critical region gene 8, isoform CRA_b [Mus musculus] Length = 611 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576 >gi|148665098|gb|EDK97514.1| DiGeorge syndrome critical region gene 8, isoform CRA_c [Mus musculus] Length = 588 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 357 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 391 >gi|155372129|ref|NP_001094674.1| microprocessor complex subunit DGCR8 [Bos taurus] gi|259645217|sp|A6QR44|DGCR8_BOVIN RecName: Full=Microprocessor complex subunit DGCR8; AltName: Full=DiGeorge syndrome critical region 8 homolog gi|151554704|gb|AAI50110.1| DGCR8 protein [Bos taurus] gi|296478289|gb|DAA20404.1| DiGeorge syndrome critical region gene 8 [Bos taurus] Length = 760 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 529 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 563 >gi|119623404|gb|EAX02999.1| DiGeorge syndrome critical region gene 8, isoform CRA_b [Homo sapiens] Length = 490 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 259 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 293 >gi|114685159|ref|XP_001167112.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 1 [Pan troglodytes] Length = 700 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576 >gi|114685161|ref|XP_001167301.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 3 [Pan troglodytes] Length = 489 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 258 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 292 >gi|114685163|ref|XP_514988.2| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 8 [Pan troglodytes] Length = 416 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 185 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 219 >gi|114685157|ref|XP_001167234.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 2 [Pan troglodytes] Length = 783 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576 >gi|157786750|ref|NP_001099335.1| microprocessor complex subunit DGCR8 [Rattus norvegicus] gi|149019782|gb|EDL77930.1| DiGeorge syndrome critical region gene 8 (predicted), isoform CRA_a [Rattus norvegicus] gi|149019783|gb|EDL77931.1| DiGeorge syndrome critical region gene 8 (predicted), isoform CRA_a [Rattus norvegicus] Length = 773 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576 >gi|62897151|dbj|BAD96516.1| DiGeorge syndrome critical region gene 8 variant [Homo sapiens] Length = 570 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 339 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 373 >gi|159163522|pdb|1X47|A Chain A, Solution Structure Of Dsrm Domain In Dgcr8 Protein Length = 98 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 48 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 82 >gi|39645186|gb|AAH09323.2| DGCR8 protein [Homo sapiens] Length = 517 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 286 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 320 >gi|73995913|ref|XP_543542.2| PREDICTED: similar to DiGeorge syndrome critical region gene 8 [Canis familiaris] Length = 782 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 523 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 557 >gi|52546044|emb|CAE46205.2| hypothetical protein [Homo sapiens] Length = 492 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 261 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 295 >gi|38488720|ref|NP_073557.3| microprocessor complex subunit DGCR8 isoform 1 [Homo sapiens] gi|114685149|ref|XP_001167363.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 5 [Pan troglodytes] gi|114685151|ref|XP_001167389.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 6 [Pan troglodytes] gi|114685153|ref|XP_001167420.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 7 [Pan troglodytes] gi|23813990|sp|Q8WYQ5|DGCR8_HUMAN RecName: Full=Microprocessor complex subunit DGCR8; AltName: Full=DiGeorge syndrome critical region 8 gi|18147097|dbj|BAB83032.1| DGCR8 protein [Homo sapiens] gi|47678243|emb|CAG30242.1| Em:AC006547.4 [Homo sapiens] gi|109451272|emb|CAK54497.1| DGCR8 [synthetic construct] gi|109451850|emb|CAK54796.1| DGCR8 [synthetic construct] gi|119623403|gb|EAX02998.1| DiGeorge syndrome critical region gene 8, isoform CRA_a [Homo sapiens] gi|168279077|dbj|BAG11418.1| DiGeorge syndrome critical region gene 8 [synthetic construct] Length = 773 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576 >gi|10438086|dbj|BAB15165.1| unnamed protein product [Homo sapiens] Length = 490 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 259 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 293 >gi|41152099|ref|NP_201581.2| microprocessor complex subunit DGCR8 [Mus musculus] gi|50403798|sp|Q9EQM6|DGCR8_MOUSE RecName: Full=Microprocessor complex subunit DGCR8; AltName: Full=DiGeorge syndrome critical region 8 homolog; AltName: Full=Gy1 gi|38566065|gb|AAH62919.1| DiGeorge syndrome critical region gene 8 [Mus musculus] gi|40645099|dbj|BAD06468.1| Dgcr8 protein [Mus musculus] gi|42490933|gb|AAH66118.1| DiGeorge syndrome critical region gene 8 [Mus musculus] gi|117646832|emb|CAL37531.1| hypothetical protein [synthetic construct] gi|148665096|gb|EDK97512.1| DiGeorge syndrome critical region gene 8, isoform CRA_a [Mus musculus] gi|148665099|gb|EDK97515.1| DiGeorge syndrome critical region gene 8, isoform CRA_a [Mus musculus] Length = 773 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576 >gi|156537077|ref|XP_001602214.1| PREDICTED: similar to tRNA-dihydrouridine synthase [Nasonia vitripennis] Length = 505 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 48/190 (25%), Gaps = 8/190 (4%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 SY +L D + + + L RF + E +V + Sbjct: 310 RSYLKLAVDYDNSPSNTKYCVQNILRELQESP-LGKRFLDTQTLEQICEVWGLDEYCRTK 368 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 + R F + + E + + R + Sbjct: 369 QKEHRDRGFGGRFEVVPERLSLIDGNGGAGKRKLDEEEDVLLMRCAFLRNNYADDTSLPK 428 Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAA 216 + + + D F VV++ G + SK+ AEQ AA Sbjct: 429 SRLAKWTRDNRKKLPIYVTHHE------DKLFRSVVQVDGRKYGSSFWEKSKKWAEQGAA 482 Query: 217 AEVLKREGIW 226 L G+ Sbjct: 483 LACLCALGVI 492 >gi|50511727|gb|AAT77416.1| dsRNA-binding protein LH1 [Brassica oleracea var. capitata] Length = 283 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221 + ++ + T + GP H P F V ++ + +++AAEQ AA L+ Sbjct: 21 QEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALQ 80 Query: 222 RE 223 Sbjct: 81 EL 82 Score = 44.5 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 24/72 (33%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K LQE+ P Y+ P+FT VEI G+ +K+ A Sbjct: 97 HEMGLCKNLLQEYTQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEA 156 Query: 212 EQVAAAEVLKRE 223 E A L Sbjct: 157 EISAGRTALIAI 168 >gi|8346542|emb|CAB93934.1| BcpLH protein [Brassica rapa subsp. pekinensis] gi|50511731|gb|AAT77418.1| dsRNA-binding protein LH-c [Brassica napus] Length = 274 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221 + ++ + T + GP H P F V ++ + +++AAEQ AA L+ Sbjct: 21 QEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALQ 80 Query: 222 RE 223 Sbjct: 81 EL 82 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 25/72 (34%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K LQE+A P Y+ P+FT VEI G+ +K+ A Sbjct: 97 HEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEA 156 Query: 212 EQVAAAEVLKRE 223 E A L Sbjct: 157 EISAGRTALIAI 168 >gi|27262829|emb|CAD59423.1| dsRNA-binding protein [Brassica rapa subsp. rapa] Length = 275 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221 + ++ + T + GP H P F V ++ + +++AAEQ AA L+ Sbjct: 21 QEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALQ 80 Query: 222 RE 223 Sbjct: 81 EL 82 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 25/72 (34%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K LQE+A P Y+ P+FT VEI G+ +K+ A Sbjct: 97 HEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEA 156 Query: 212 EQVAAAEVLKRE 223 E A L Sbjct: 157 EISAGRTALIAI 168 >gi|50294528|ref|XP_449675.1| hypothetical protein [Candida glabrata CBS 138] gi|49528989|emb|CAG62651.1| unnamed protein product [Candida glabrata] Length = 358 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 3/110 (2%) Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 ++ +L A+ + A F+ + ++ + + EL + P Sbjct: 228 RSIIAALWASTQNTAKPDSAIHFIKDHILSRKLDVTKIFQFENPTRELAVLCRRENLDLP 287 Query: 174 EYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K+ SG P F V V +G S + A+ AA++ L + Sbjct: 288 VSKLIAESGRLSKAPVFIVGVFSGEEKLGEGYGSSLKEAKARAASDALLK 337 >gi|241998518|ref|XP_002433902.1| staufen, putative [Ixodes scapularis] gi|215495661|gb|EEC05302.1| staufen, putative [Ixodes scapularis] Length = 651 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 1/82 (1%) Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 + + + L + AK P Y + G F + + G Q Sbjct: 358 QIKCINAQNSQGVNPISRLIQIQQAKKEPEPSYSLVSERGDPRQREFVLQCVL-GALTTQ 416 Query: 203 GMDCSKRAAEQVAAAEVLKREG 224 G +K+ A+++AA +L++ G Sbjct: 417 GAGPNKKTAKRLAAEAMLQKLG 438 Score = 36.4 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 L V +Y++ SGP H FTVV+ ++G Q S + Sbjct: 82 PMCLVNELARFNKVALQYRLVEESGPPHKKNFTVVLRLAGNEY-QASGTSIK 132 >gi|328871085|gb|EGG19456.1| hypothetical protein DFA_00033 [Dictyostelium fasciculatum] Length = 1106 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 17/121 (14%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----------------ESYERLEFLGD 48 + +K + N LL + TH S +RLEFLGD Sbjct: 686 KMYEFQKSF-VSIKNDLLLRQVFTHPSTKMINSLVPQSYNIFRDYLPFDGDNQRLEFLGD 744 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 +L + L+ + +EG+L+ + + + S ++ +R + Sbjct: 745 SVLKFCTTYYLYFKYPQLREGQLTSKRSEITSNSYLLSKCERWNVVDLLRFTVTEDMKKP 804 Query: 109 S 109 Sbjct: 805 K 805 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 10/132 (7%) Query: 13 IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 + L ++++T +SYERLEFLGD L L+IS L++ F +EG LS Sbjct: 866 LRINIKKTCLFQQSMT----CSGDLDSYERLEFLGDAFLDLVISKHLYDQFPDKQEGFLS 921 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV E +Q++++++L S + F D++E+ I L LD G+ Sbjct: 922 TARAGLVKNEALAQISQKINL------SLAISDPHIHFTVKRLGDLLEAFIGCLLLDCGM 975 Query: 133 EVAGTFVDKYWK 144 E F+ + Sbjct: 976 EKTKYFIHTQFN 987 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 3/66 (4%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220 + GV + GP++ FT V G +G +K+ AE+ +A V+ Sbjct: 13 CQKHREGVPNYTECHQAPGPNNSNIFTSQVHCLFRGTDLSGEGKGKTKKDAEKASALSVI 72 Query: 221 KREGIW 226 + I Sbjct: 73 HQLFIL 78 >gi|6467479|gb|AAF13156.1| double stranded RNA activated protein kinase [Homo sapiens] Length = 551 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/31 (45%), Positives = 16/31 (51%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 SGP HD RFT V I G +G SK+ Sbjct: 32 NSGPPHDRRFTFQVIIDGREFPEGEGRSKKE 62 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E + GP+ F ++ + G +K+ A+Q+AA + Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165 >gi|40788412|dbj|BAD07039.1| hypothetical protein [Oryza sativa Japonica Group] Length = 397 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 + V R GPDH PRF V +G + R AE AA L R Sbjct: 37 CFSLPSNVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAAEVALARL 91 Score = 38.4 bits (87), Expect = 0.72, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 23/39 (58%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 T RSGP H P F+ VE++G++ A +K+ AE+ Sbjct: 129 YTTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKE 167 >gi|226502082|ref|NP_001146877.1| RNA binding protein [Zea mays] gi|195604576|gb|ACG24118.1| RNA binding protein [Zea mays] Length = 179 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 21/33 (63%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE 38 + L+ R+GYAF +LL +A+THSS SH Sbjct: 37 LAALQSRVGYAFRAPALLRRAMTHSSYSHENGR 69 >gi|218189405|gb|EEC71832.1| hypothetical protein OsI_04490 [Oryza sativa Indica Group] Length = 745 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +F+V V S G+ ++ A+ +AA + L+ Sbjct: 552 NMQFSVEVLFSNEKIGIGIGKTRDEAQVLAAEKALQNL 589 Score = 43.8 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 20/58 (34%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 SG + + E+ G +G+ +K A+ AA E LK T Sbjct: 665 QHVVFRDQVRDSGSALNGEYHFQAELGGQILGRGIGLNKDFAKLQAAEEALKTLKTTT 722 >gi|115441141|ref|NP_001044850.1| Os01g0857000 [Oryza sativa Japonica Group] gi|56784824|dbj|BAD82045.1| C-terminal domain phosphatase-like protein [Oryza sativa Japonica Group] gi|56785358|dbj|BAD82316.1| C-terminal domain phosphatase-like protein [Oryza sativa Japonica Group] gi|113534381|dbj|BAF06764.1| Os01g0857000 [Oryza sativa Japonica Group] gi|222619564|gb|EEE55696.1| hypothetical protein OsJ_04124 [Oryza sativa Japonica Group] Length = 756 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +F+V V S G+ ++ A+ +AA + L+ Sbjct: 552 NMQFSVEVLFSNEKIGIGIGKTRDEAQVLAAEKALQNL 589 Score = 40.3 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 21/58 (36%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 SG + + E+ G +G+D +K A+ AA E LK T Sbjct: 665 QHVVFRDQVRDSGSALNGEYHFQAELGGQILGRGIDLNKDFAKLQAAEEALKTLKTTT 722 >gi|281363621|ref|NP_001163185.1| staufen, isoform C [Drosophila melanogaster] gi|33636635|gb|AAQ23615.1| LD13210p [Drosophila melanogaster] gi|272432536|gb|ACZ94457.1| staufen, isoform C [Drosophila melanogaster] Length = 1025 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L +T +Y++T GP H FTV + + + A+ +AA+ Sbjct: 312 PMCLVNELARYNKITHQYRLTEERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAAS 370 Query: 218 EVLK 221 + ++ Sbjct: 371 KAIE 374 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV--- 219 K +T +KV GP H F + G +G K+ +++ AA ++ Sbjct: 584 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLVE 642 Query: 220 LKRE 223 L++ Sbjct: 643 LQKL 646 Score = 43.0 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSK 208 + T+L + + P +++ ++G + F + V SG A+G SK Sbjct: 706 MDDADNPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASGST-ARGTGNSK 764 Query: 209 RAAEQVAAAEVLKRE 223 + A++ AA + + Sbjct: 765 KLAKRNAAQALFELL 779 >gi|24654775|ref|NP_725748.1| staufen, isoform B [Drosophila melanogaster] gi|7302673|gb|AAF57753.1| staufen, isoform B [Drosophila melanogaster] gi|27819870|gb|AAO24983.1| LP08764p [Drosophila melanogaster] Length = 914 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L +T +Y++T GP H FTV + + + A+ +AA+ Sbjct: 200 PMCLVNELARYNKITHQYRLTEERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAAS 258 Query: 218 EVLK 221 + ++ Sbjct: 259 KAIE 262 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV--- 219 K +T +KV GP H F + G +G K+ +++ AA ++ Sbjct: 472 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLVE 530 Query: 220 LKRE 223 L++ Sbjct: 531 LQKL 534 Score = 43.0 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSK 208 + T+L + + P +++ ++G + F + V SG A+G SK Sbjct: 594 MDDADNPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASGST-ARGTGNSK 652 Query: 209 RAAEQVAAAEVLKRE 223 + A++ AA + + Sbjct: 653 KLAKRNAAQALFELL 667 >gi|158506|gb|AAA73062.1| unnamed protein product [Drosophila melanogaster] Length = 1026 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L +T +Y++T GP H FTV + + + A+ +AA+ Sbjct: 312 PMCLVNELARYNKITHQYRLTEERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAAS 370 Query: 218 EVLK 221 + ++ Sbjct: 371 KAIE 374 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV--- 219 K +T +KV GP H F + G +G K+ +++ AA ++ Sbjct: 584 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLVE 642 Query: 220 LKRE 223 L++ Sbjct: 643 LQKL 646 Score = 43.0 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSK 208 + T+L + + P +++ ++G + F + V SG A+G SK Sbjct: 706 MDDADNPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASGST-ARGTGNSK 764 Query: 209 RAAEQVAAAEVLKRE 223 + A++ AA + + Sbjct: 765 KLAKRNAAQALFELL 779 >gi|17136520|ref|NP_476751.1| staufen, isoform A [Drosophila melanogaster] gi|71153175|sp|P25159|STAU_DROME RecName: Full=Maternal effect protein staufen gi|7302672|gb|AAF57752.1| staufen, isoform A [Drosophila melanogaster] Length = 1026 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L +T +Y++T GP H FTV + + + A+ +AA+ Sbjct: 312 PMCLVNELARYNKITHQYRLTEERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAAS 370 Query: 218 EVLK 221 + ++ Sbjct: 371 KAIE 374 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV--- 219 K +T +KV GP H F + G +G K+ +++ AA ++ Sbjct: 584 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLVE 642 Query: 220 LKRE 223 L++ Sbjct: 643 LQKL 646 Score = 43.0 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSK 208 + T+L + + P +++ ++G + F + V SG A+G SK Sbjct: 706 MDDADNPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASGST-ARGTGNSK 764 Query: 209 RAAEQVAAAEVLKRE 223 + A++ AA + + Sbjct: 765 KLAKRNAAQALFELL 779 >gi|313237061|emb|CBY25144.1| unnamed protein product [Oikopleura dioica] Length = 1307 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + L + A P Y+V F + ++ +QG+ +K+ A+++A Sbjct: 1115 HPVSRLAQIQQAAKEREPIYQVISEKSVQRKKEFIMQCIVNDKV-SQGIGPNKKTAKKIA 1173 Query: 216 AAEVLKREG 224 A +L G Sbjct: 1174 AEAMLVIMG 1182 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 13/63 (20%) Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR-------------AAEQVAAAEV 219 P+Y +T GP H FTV +E+ +G S + A+ AA + Sbjct: 796 PKYTLTGEEGPPHHKTFTVTLELGPGEKYEGSGTSIKKVNHLFCSKNNLFKAQHSAAKKA 855 Query: 220 LKR 222 ++ Sbjct: 856 IEN 858 Score = 44.1 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 4/75 (5%) Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 R + + + K P F V + + G Sbjct: 896 MAHYKMVDRKPIFHNNQSFNPQIYPNANPKRINTRPP---KLFVVELTV-GEKVFHAEGR 951 Query: 207 SKRAAEQVAAAEVLK 221 +++ A+ AA + L+ Sbjct: 952 TRQQAKHSAATQALE 966 Score = 43.8 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 70/246 (28%), Gaps = 35/246 (14%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLE-----------FLGDRILGLLISTLL 59 K++ + F +++ L KA H S + E+ + LE D + + L Sbjct: 832 KKVNHLFCSKNNLFKA-QH-SAAKKAIENCQTLERPKYKPKRPKQINYDALTPTVKLNGL 889 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----------DLRKDVCS 109 ++ R + ++ + I + Sbjct: 890 AMKRGEMAHYKMVDRKPIFHNNQSFNPQIYPNANPKRINTRPPKLFVVELTVGEKVFHAE 949 Query: 110 FMTSIQADVVESLIAA-LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 T QA + A Y + + + ++ L K Sbjct: 950 GRTRQQAKHSAATQALEYYERNPAPEKVPKPAQSGQPIPPGEQSQPKKSEVSLVYELALK 1009 Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISG-----------LAPAQGMDCSKRAAEQVAAA 217 +T +++ GP H +++ + + A+G SK+ A + AA Sbjct: 1010 RNLTVQFEKISEEGPPHLKHYSIRLHVGNPEEQEDNEQITYFTAEGQAQSKKLARRKAAI 1069 Query: 218 EVLKRE 223 VL Sbjct: 1070 TVLDEM 1075 >gi|313212829|emb|CBY36745.1| unnamed protein product [Oikopleura dioica] Length = 596 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + L + A P Y+V F + ++ +QG+ +K+ A+++A Sbjct: 404 HPVSRLAQIQQAAKEREPIYQVISEKSVQRKKEFIMQCIVNDKV-SQGIGPNKKTAKKIA 462 Query: 216 AAEVLKREG 224 A +L G Sbjct: 463 AEAMLVIMG 471 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 13/78 (16%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR-------- 209 + P+Y +T GP H FTV +E+ +G S + Sbjct: 70 PMCQVNEIAKFNKLAPKYTLTGEEGPPHHKTFTVTLELGPGEKYEGSGTSIKKVNHLFCS 129 Query: 210 -----AAEQVAAAEVLKR 222 A+ AA + ++ Sbjct: 130 KNNLFKAQHSAAKKAIEN 147 Score = 44.1 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 4/75 (5%) Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206 R + + + K P F V + + G Sbjct: 185 MAHYKMVDRKPIFHNNQSFNPQIYPNANPKRINTRPP---KLFVVELTV-GEKVFHAEGR 240 Query: 207 SKRAAEQVAAAEVLK 221 +++ A+ AA + L+ Sbjct: 241 TRQQAKHSAATQALE 255 Score = 43.8 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 70/246 (28%), Gaps = 35/246 (14%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLE-----------FLGDRILGLLISTLL 59 K++ + F +++ L KA H S + E+ + LE D + + L Sbjct: 121 KKVNHLFCSKNNLFKA-QH-SAAKKAIENCQTLERPKYKPKRPKQINYDALTPTVKLNGL 178 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----------DLRKDVCS 109 ++ R + ++ + I + Sbjct: 179 AMKRGEMAHYKMVDRKPIFHNNQSFNPQIYPNANPKRINTRPPKLFVVELTVGEKVFHAE 238 Query: 110 FMTSIQADVVESLIAA-LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 T QA + A Y + + + ++ L K Sbjct: 239 GRTRQQAKHSAATQALEYYERNPAPEKVPKPAQSGQPIPPGEQSQPKKSEVSLVYELALK 298 Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISG-----------LAPAQGMDCSKRAAEQVAAA 217 +T +++ GP H +++ + + A+G SK+ A + AA Sbjct: 299 RNLTVQFEKISEEGPPHLKHYSIRLHVGNPEEQEDNEQITYFTAEGQAQSKKLARRKAAI 358 Query: 218 EVLKRE 223 VL Sbjct: 359 TVLDEM 364 >gi|29126353|gb|AAO66545.1| hypothetical protein Os03g63740 [Oryza sativa Japonica Group] gi|108712167|gb|ABF99962.1| expressed protein [Oryza sativa Japonica Group] Length = 213 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 3/135 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +TL+ +I Y F LL +A+TH+S S + L LG + Sbjct: 34 LATLQNQIAYRFHAPDLLRRAMTHASYSRENGRA---LAVLGLAASQSAAALRALAADHD 90 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A +S R C A + + S +RV++ + + ++ ++ Sbjct: 91 ASASAVSRRARDASGEAACVAAAARVGIPSIVRVAAGTKPTAPPVVCGALRALIGAVAVD 150 Query: 126 LYLDGGIEVAGTFVD 140 E + Sbjct: 151 ANSTHAAEEVFWKLH 165 >gi|166796315|gb|AAI59182.1| dgcr8 protein [Xenopus (Silurana) tropicalis] Length = 550 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 319 FGASVIIDGVTYGTGTASSKKLAKNKAARATLEIL 353 >gi|163860194|gb|ABY41265.1| interferon-resistance protein [Orf virus] gi|197344481|gb|ACH69627.1| interferon-resistance protein [Orf virus] Length = 183 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 22/54 (40%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + E+ T G DH P FT + ISG A SK+ A A A L Sbjct: 119 MMTHRSLEFCETRSGGKDHCPLFTCTITISGKVVAAADGASKKLARHTACASAL 172 >gi|37594904|gb|AAQ94311.1| interferon resistance protein [Orf virus] Length = 183 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 22/54 (40%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH PRFT + ISG A SKR A A + L Sbjct: 119 MMTHRPLEFCETRSGGEDHCPRFTCTITISGKVVAAADGASKRLARHTACSSAL 172 >gi|153792023|ref|NP_001093309.1| MLE protein [Bombyx mori] gi|147883246|gb|ABQ51917.1| MLE protein [Bombyx mori] Length = 1308 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 +GP H RF V + G + G +K+ A+ AA + Sbjct: 20 FDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKD 63 >gi|326915415|ref|XP_003204013.1| PREDICTED: interferon-induced, double-stranded RNA-activated protein kinase-like [Meleagris gallopavo] Length = 545 Score = 49.5 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 13/33 (39%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 Y GP HDP FTV V I G S Sbjct: 22 YIDVDMRGPSHDPEFTVTVRIDNKEYGTGTGKS 54 Score = 36.8 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 17/50 (34%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 L + +Y R+G H P ++ ISG G+ S Sbjct: 100 YVSLLNKYSQRTLQLVDYNNINRTGDAHAPMYSCSCTISGHVYGNGIGNS 149 >gi|224067130|ref|XP_002302370.1| predicted protein [Populus trichocarpa] gi|222844096|gb|EEE81643.1| predicted protein [Populus trichocarpa] Length = 355 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 23/60 (38%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 LQE+A P Y+ P F VEI G+ +K+ AE AA L Sbjct: 106 LQEYAQKMNYAIPLYECQKDETPGRGLVFKCTVEIGGIRYIGASTKTKKEAEIKAARTAL 165 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKRE 223 T + GP H+P F V + + +++AAEQ AA L Sbjct: 34 YETIKEGPSHEPSFRSTVIVKDVRYDSLPGFFNRKAAEQSAAEVALVEL 82 >gi|330802362|ref|XP_003289187.1| hypothetical protein DICPUDRAFT_79950 [Dictyostelium purpureum] gi|325080763|gb|EGC34305.1| hypothetical protein DICPUDRAFT_79950 [Dictyostelium purpureum] Length = 1059 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 5/91 (5%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 TL + + SLLE+A S +Y+RLEF+GD +L + + L+ F Sbjct: 908 DLRTLLFNLDLRIDHPSLLEEAF-----SSGTNVNYQRLEFVGDGVLDYITADYLYKEFP 962 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLAS 95 EG L+ + LV S ++ L L Sbjct: 963 EYNEGTLTEFRSRLVRNNNLSDASKRLKLPP 993 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 24/180 (13%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFL 46 +R + RI + + +L +A TH S S + +RLE+L Sbjct: 736 VRLAQFNTRI-VSLKSYKILREAFTHPSTKASNRLIPPSELPMFKDYYPYLGDNQRLEYL 794 Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 GD +L L S LF + +KEG LS+ + + + +V++ + L +R+S+ Sbjct: 795 GDSVLKLASSIYLFYKYSGSKEGALSMERANNIKNDNLIEVSKRMHLDEILRLSNSDEIK 854 Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 ADV+E+L A+ LD G E A + +Y + + + E Sbjct: 855 ------KPHADVIEALFGAISLDRGFEKAYEIIVRYVFNDSNVRLPLYQSSMEETVLSHD 908 Score = 44.5 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 20/52 (38%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + G +H+ F +V ++ +K+ AE+ A +L+ Sbjct: 18 PNIVYTSESRGSEHNKDFKTIVIVNNRRIESEWRKNKKDAEKDCATHILEYL 69 >gi|301170840|dbj|BAJ12034.1| virus interferon resistance [Orf virus] Length = 183 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 22/54 (40%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH PRFT + ISG A SK+ A A + L Sbjct: 119 MMTHRPLEFSETRAGGEDHCPRFTCTITISGKVVAAADGASKKLARHTACSSAL 172 >gi|158298855|ref|XP_001238071.2| AGAP009887-PA [Anopheles gambiae str. PEST] gi|157014087|gb|EAU76055.2| AGAP009887-PA [Anopheles gambiae str. PEST] Length = 324 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 ++++ + PE GP H P F I + +G +K+ A+Q+A E Sbjct: 113 NQVRDICIQRNFPLPEIVQVRSYGPSHAPVFEFECRIREIVR-RGSHSTKKGAKQIACQE 171 Query: 219 VLKRE 223 ++K Sbjct: 172 MIKTL 176 >gi|115613122|ref|XP_001177698.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115975098|ref|XP_001191759.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 321 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 65/223 (29%), Gaps = 20/223 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLG-DRILGLLISTLLFNHFD 64 +R G F N + A TH S ++S + L D L L +T L N Sbjct: 77 IYAFCQRFGEEF-NGETVRTAFTHKSYVEKEEKSRREMGLLDQDAKLQLDDNTQLVNAGY 135 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 ++ + + + R ++ ++ + + + +A + Sbjct: 136 QFSSDYIAG-YLRHALPKVPEEGYRRMEKKNYKYTKIHTKMNKDNVKGMDRAGLFVRDFI 194 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + L + + L + + PE ++ +G + Sbjct: 195 I---------------PQLMDKDLCDVWLIDNPMSLLVQVLADQQREEPEARLLREAGKN 239 Query: 185 -HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR-EGI 225 P F V + S AE AA L+ GI Sbjct: 240 TFTPLFMVGIYSDKKLLGWAPGESVTIAEDEAARVALRNLLGI 282 >gi|163860196|gb|ABY41266.1| interferon-resistance protein [Orf virus] Length = 183 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 22/54 (40%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + E+ T G DH P FT + ISG A SK+ A A A L Sbjct: 119 MMTHRSLEFCETRSGGKDHCPLFTCTITISGKVVAAADGASKKLARHTACASAL 172 >gi|41057083|ref|NP_957797.1| ORF020 dsRNA-binding PKR inhibitor [Orf virus] gi|41018640|gb|AAR98245.1| ORF020 dsRNA-binding PKR inhibitor [Orf virus] Length = 183 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 22/54 (40%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + E+ T G DH P FT + ISG A SK+ A A A L Sbjct: 119 MMTHRSLEFCETRSGGKDHCPLFTCTITISGKVVAAADGASKKLARHTACASAL 172 >gi|12085017|ref|NP_073419.1| 34L protein [Yaba-like disease virus] gi|12056193|emb|CAC21272.1| 34L protein [Yaba-like disease virus] Length = 185 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 29/103 (28%) Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 + + + K +D + + +F Sbjct: 69 WFKNYNCDNGEKHDSKLEQKNHIPNHIFSDTVPYKKIINWKDKNPCIVLNEYCQFTCRDW 128 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 SG H P FT V ISG+ + +KR A+ A+ Sbjct: 129 SIDITTSGKSHCPMFTATVIISGIKFKPAIGNTKREAKYNASK 171 >gi|115955350|ref|XP_001193629.1| PREDICTED: similar to Staufen, RNA binding protein, homolog 2 (Drosophila), partial [Strongylocentrotus purpuratus] Length = 486 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G H F + + G + SK+ A++ AA +L + Sbjct: 290 LDERGQPHLKIFKLQCTV-GEFNTESEGPSKKDAKRKAAELMLPKLK 335 >gi|115714507|ref|XP_001196524.1| PREDICTED: similar to Staufen, RNA binding protein, homolog 2 (Drosophila), partial [Strongylocentrotus purpuratus] Length = 396 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G H F + + G + SK+ A++ AA +L + Sbjct: 290 LDERGQPHLKIFKLQCTV-GEFNTESEGPSKKDAKRKAAELMLPKLK 335 >gi|302664704|ref|XP_003023979.1| nucleolar RNAse III, putative [Trichophyton verrucosum HKI 0517] gi|291188003|gb|EFE43361.1| nucleolar RNAse III, putative [Trichophyton verrucosum HKI 0517] Length = 452 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 78/225 (34%), Gaps = 29/225 (12%) Query: 23 LEKA-LTH-------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 L+ A TH + + +++Y+RLE LGD + L+ + L++ +F + G+++ Sbjct: 191 LKTAVFTHTGIMERGPVSTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKIAQA 250 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 ++V ET ++ A ++ SSD++ T + DV E+ +AA + Sbjct: 251 RETMVKNETLAEYAIAYGFDRLLKTSSDIKNV-PKRWTKVMGDVFEAYVAAAIIADPKGG 309 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-----DHDPR- 188 + K + + + G + PR Sbjct: 310 LQAVESWLTQLWLPKLAEVKVPLASVTLAQGSKASFKDKLAATVMSRGIKLQYLEEKPRQ 369 Query: 189 --------FTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220 F + ++G G SK A AA L Sbjct: 370 REGGLVTSF-IGAYLTGWGYEKKLLGSGSGLSKSEAGNEAALNAL 413 >gi|195121068|ref|XP_002005043.1| GI19273 [Drosophila mojavensis] gi|193910111|gb|EDW08978.1| GI19273 [Drosophila mojavensis] Length = 1100 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + +T +KV GP H F + G ++G K+ +++ AA ++L Sbjct: 632 HEIGIRRNMTVHFKVLREEGPAHMKNFITACIV-GSIVSEGEGNGKKISKKRAAEKMLAE 690 Query: 223 E 223 Sbjct: 691 L 691 Score = 48.0 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L +T +Y++T GP H FTV +++ + A+ +AA+ Sbjct: 355 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAAS 413 Query: 218 EVLK 221 + ++ Sbjct: 414 KAIE 417 Score = 42.6 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 38/84 (45%), Gaps = 3/84 (3%) Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLA 199 + K+++ + T+L + + P +++ ++G + F + V SG Sbjct: 747 HQKEKSTADQDDAENPITKLIQLQQTRKEKEPIFELIAKNGNESCRRREFVMEVSASGRT 806 Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 A+G SK+ A++ +A +L+ Sbjct: 807 -ARGTGNSKKQAKRNSAQALLELL 829 >gi|327276491|ref|XP_003223003.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Anolis carolinensis] Length = 488 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 43/177 (24%), Gaps = 1/177 (0%) Query: 50 ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 L + + + ++ + A+ L + + Sbjct: 258 CLLKDVMQKYIKYAVRYDNHYTNTKYCLCQMLREQLENAQGKKLHAAQSIQEICEVFEMG 317 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 ++E A+L E K + T Sbjct: 318 SFYEETTAILEGKKASLEAKDQDENDQIEDTDVVKMAVRFDKREYPPQITPKMHLLEWCR 377 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225 V D F VV ++ + + SK+ AEQ AA L+ G+ Sbjct: 378 KGKLPQPVYETIERPRDRLFCSVVTVAEQKYSSTLWEKSKKLAEQAAAIACLRALGL 434 >gi|170574540|ref|XP_001892859.1| Double-stranded RNA binding motif family protein [Brugia malayi] gi|158601386|gb|EDP38310.1| Double-stranded RNA binding motif family protein [Brugia malayi] Length = 369 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 1/51 (1%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 GP + F + G +K+ A+ +AA ++ + W Sbjct: 134 YEIDEEGPTNQRIFIATCTV-GKIHVVAHGKTKKIAKTLAAQKMCTQLENW 183 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F E+ G+ G +K+ A+Q+AA ++LK+ Sbjct: 68 FATRCELYGI-YTMGYGRTKKIAKQMAAKDMLKKM 101 >gi|322797373|gb|EFZ19485.1| hypothetical protein SINV_11443 [Solenopsis invicta] Length = 345 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 37/147 (25%), Gaps = 13/147 (8%) Query: 90 ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 ++ ++ L + + + Sbjct: 32 HVNTFTYRVSCDGLNATGTGRCKKDAKHEAAKAMLTEIAKHRNYPQLPAANTPTVSPSRS 91 Query: 150 SGKFRRDAKT------------ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 ELQE PEY + GP H FT+ +IS Sbjct: 92 PFHSAPLPPRLPSNVPFFNAVGELQELCAINNLQEPEYLLIKDIGPPHARIFTLRCKISN 151 Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKREG 224 G +K+ A+ AA +++ R Sbjct: 152 FEE-DGTATTKKQAKHDAAKKMVDRIK 177 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 1/67 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + + K G+ P+Y + G H FT V GL A G K+ A+ Sbjct: 1 MSKTPVSILQEMMVKQGMIPDYDLIHDGGGRHVNTFTYRVSCDGLN-ATGTGRCKKDAKH 59 Query: 214 VAAAEVL 220 AA +L Sbjct: 60 EAAKAML 66 >gi|146260811|gb|ABQ14708.1| adenosine deaminase [Bombyx mori] Length = 570 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%) Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H RF VV +I +G SK+ A+ AA L Sbjct: 162 AHSMRFKVVCQIKEQKF-EGYGSSKKLAKLAAARSAL 197 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H P FTV V ++ + +G SKR A AA L Sbjct: 13 AHCPSFTVAVNVADMTF-EGWGHSKREARASAARVCLAAL 51 >gi|323307668|gb|EGA60933.1| Rnt1p [Saccharomyces cerevisiae FostersO] Length = 253 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 12/138 (8%) Query: 16 AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 + ++ + H S ERLEFLGD IL +++ +++N F Sbjct: 61 EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 120 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQADVVESLI 123 EG+LS +LVS E Q + + ++ + DL+ + +F + ADV E+ I Sbjct: 121 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 180 Query: 124 AALYLDGGIEVAGTFVDK 141 L D Sbjct: 181 GGLMEDDPRNNLPKIRKW 198 >gi|115313587|gb|AAI24420.1| Dgcr8 protein [Danio rerio] Length = 578 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 16/35 (45%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G+ SK+ A+ AA L+ Sbjct: 347 FGASVIIDGVTYGTGIASSKKLAKNKAARATLEIL 381 >gi|302506394|ref|XP_003015154.1| nucleolar RNAse III, putative [Arthroderma benhamiae CBS 112371] gi|291178725|gb|EFE34514.1| nucleolar RNAse III, putative [Arthroderma benhamiae CBS 112371] Length = 399 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 78/225 (34%), Gaps = 29/225 (12%) Query: 23 LEKA-LTH-------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 L+ A TH + + +++Y+RLE LGD + L+ + L++ +F + G+++ Sbjct: 138 LKTAVFTHTGIMERGPVSTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKIAQA 197 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 ++V ET ++ A ++ SSD++ T + DV E+ +AA + Sbjct: 198 RETMVKNETLAEYAIAYGFDRLLKTSSDIKSVS-KRWTKVMGDVFEAYVAAAIIADPKGG 256 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-----DHDPR- 188 + K + + + G + PR Sbjct: 257 LQAVESWLTQLWLPKLAEVKVPLASVTLAQGSKASFKDKLAATVMSRGIKLQYLEEKPRQ 316 Query: 189 --------FTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220 F + ++G G SK A AA L Sbjct: 317 REGGLVTSF-IGAYLTGWGYEKKLLGSGSGLSKSEAGNEAALNAL 360 >gi|118365014|ref|XP_001015728.1| Double-stranded RNA binding motif family protein [Tetrahymena thermophila] gi|89297495|gb|EAR95483.1| Double-stranded RNA binding motif family protein [Tetrahymena thermophila SB210] Length = 755 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 12/112 (10%), Positives = 31/112 (27%) Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 + ++ + + ++ + L + L + Sbjct: 172 KRKQQEIQECLIDQNKNDDQSPQKQDKNENNFVQNLMDDIQLYFPQKPLSVFLREYCSKM 231 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F+ + I G +G+ SK+ A + A+ L + G Sbjct: 232 KRAMDIICDENEKGLGFSSYLIIDGKHYPKGIGKSKKDAREEASMNALAKMG 283 >gi|281201329|gb|EFA75541.1| hypothetical protein PPL_11046 [Polysphondylium pallidum PN500] Length = 1128 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 16/39 (41%) Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 GP H P F + ++ SK+ A+ + + L Sbjct: 704 GPQHQPEFICGLYLNNELKETCKGRSKKDAKDKVSRQAL 742 >gi|47228159|emb|CAF97788.1| unnamed protein product [Tetraodon nigroviridis] Length = 189 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 Y VT RSGP H P F V V+++G+ +G + + A+ AA L+ Sbjct: 25 YHVTSRSGPLHAPLFAVGVDVNGVRF-EGRGPTVKRAKLRAAELALR 70 >gi|325181016|emb|CCA15426.1| AlNc14C11G1368 [Albugo laibachii Nc14] Length = 841 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 72/211 (34%), Gaps = 14/211 (6%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84 +ALT + + + LGD ++ ++++ L + F +K+ L + + S E Sbjct: 628 QALTRPTEALESL----WIMHLGDAMINMVVAAFLIHTFPCSKDELLLHVQSHVTSNEQR 683 Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 AR+ +A + + D ++ + A V + + L+L+ V Sbjct: 684 ILAARKAGIAHLLPLLCDEYEEEQINGSDKLARVFNTTLGFLFLENDGNVPFMTQILKHI 743 Query: 145 QRA----------LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + + K ++ S FTV + Sbjct: 744 MFPDILAVIDRREWQRSTQSFGHYLLSWDKQNHKRTRCTFKRLRDSSADSKHGHFTVALY 803 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 ++ A+G S A+ A + L+ G+ Sbjct: 804 VNDHMVARGRGISMSTAQDAACMKALRMFGL 834 >gi|156364733|ref|XP_001626500.1| predicted protein [Nematostella vectensis] gi|156213378|gb|EDO34400.1| predicted protein [Nematostella vectensis] Length = 237 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 186 DPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223 D FT V + G+ + + +K+ A+ AA + ++ Sbjct: 85 DKIFTCDVTVDGVLSSCRAYGPTKKEAKGNAARKAIEEL 123 >gi|332227208|ref|XP_003262783.1| PREDICTED: interferon-induced, double-stranded RNA-activated protein kinase [Nomascus leucogenys] Length = 510 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 17/43 (39%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SG F ++ + G +K+ A+Q+AA + Sbjct: 123 SGVHGPKGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYVQI 165 Score = 38.4 bits (87), Expect = 0.85, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 12/28 (42%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I + S Sbjct: 32 NSGPPHDRRFTFRVIIDEREFPEAEGRS 59 >gi|242059289|ref|XP_002458790.1| hypothetical protein SORBIDRAFT_03g040355 [Sorghum bicolor] gi|241930765|gb|EES03910.1| hypothetical protein SORBIDRAFT_03g040355 [Sorghum bicolor] Length = 718 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 16/35 (45%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F+V V S G+ ++ A+ AA + L+ Sbjct: 537 FSVEVLFSNEKIGIGIGKTRDEAQVQAAEKALQNL 571 >gi|254582945|ref|XP_002499204.1| ZYRO0E06490p [Zygosaccharomyces rouxii] gi|238942778|emb|CAR30949.1| ZYRO0E06490p [Zygosaccharomyces rouxii] Length = 380 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 26/102 (25%), Gaps = 1/102 (0%) Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + ++ + EL + P ++ S Sbjct: 258 WACTQETNPQYAFQFIDDHILSRKLDISKMFQFEQPTRELAALCRREGLQKPVSRLLAES 317 Query: 182 GPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G P F V V +G S + + AA + L + Sbjct: 318 GRHSKAPVFIVGVFSGDEKLGEGFGSSLKEGKARAATDALMK 359 >gi|255578155|ref|XP_002529947.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223530577|gb|EEF32455.1| double-stranded RNA binding protein, putative [Ricinus communis] Length = 464 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L + + G TFRSG H P FT VE++G+ +K+ AE+ AA Sbjct: 88 YKNLLQEIAQRVGAPLPQYTTFRSGLGHQPVFTGTVELAGITFTGEPAKNKKQAEKNAAM 147 Query: 218 EV---LKRE 223 LK+ Sbjct: 148 AAWSSLKQL 156 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPHYCSTLRQAEHSAAEVALTSL 68 >gi|208690905|gb|ACI31228.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Hylobates alibarbis] Length = 551 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 15/43 (34%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G F ++ + +K+ A+Q+AA + Sbjct: 123 WGMHGTKGFHYKCKMGQKEYSIATGSTKQEAKQLAAKLAYVQI 165 Score = 38.4 bits (87), Expect = 0.85, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 12/28 (42%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I + S Sbjct: 32 NSGPPHDRRFTFRVIIDEREFPEAEGRS 59 >gi|208690879|gb|ACI31215.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Nomascus leucogenys] Length = 551 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 17/43 (39%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SG F ++ + G +K+ A+Q+AA + Sbjct: 123 SGVHGPKGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYVQI 165 Score = 38.4 bits (87), Expect = 0.85, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 12/28 (42%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I + S Sbjct: 32 NSGPPHDRRFTFRVIIDEREFPEAEGRS 59 >gi|301608716|ref|XP_002933927.1| PREDICTED: eukaryotic translation initiation factor 2-alpha kinase 3 [Xenopus (Silurana) tropicalis] Length = 384 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKREG 224 RFTV + I +G S++AA++ AA L+ G Sbjct: 3 KRFTVHLYIENEIFGEGQGRSRKAADKEAARTGLAALQNRG 43 >gi|313243436|emb|CBY42194.1| unnamed protein product [Oikopleura dioica] Length = 723 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 22/73 (30%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + T L A + ++ D + V A G +K Sbjct: 463 FMMEGMDCPLTILSRTASLNKMQIFWEESEKKNKTDGGGTWEATVSFDKTKIADGHGKTK 522 Query: 209 RAAEQVAAAEVLK 221 + A+ AA+ L+ Sbjct: 523 KDAKADAASNALR 535 >gi|313231812|emb|CBY08924.1| unnamed protein product [Oikopleura dioica] Length = 672 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 22/73 (30%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + T L A + ++ D + V A G +K Sbjct: 412 FMMEGMDCPLTILSRTASLNKMQIFWEESEKKNKTDGGGTWEATVSFDKTKIADGHGKTK 471 Query: 209 RAAEQVAAAEVLK 221 + A+ AA+ L+ Sbjct: 472 KDAKADAASNALR 484 >gi|255569490|ref|XP_002525712.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223535012|gb|EEF36695.1| double-stranded RNA binding protein, putative [Ricinus communis] Length = 280 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 16/43 (37%) Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G H P F VE+ G +K+ AE AA K Sbjct: 31 GESHKPTFASTVEVKGEFFTGQQTRTKKQAEFNAAKVAYKALK 73 >gi|207111610|ref|ZP_03245772.1| ribonuclease III [Helicobacter pylori HPKX_438_CA4C1] Length = 43 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 16/39 (41%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 GPDH F + + I A SK+ AEQ A Sbjct: 3 LKEKGPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 41 >gi|297822435|ref|XP_002879100.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata] gi|297324939|gb|EFH55359.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata] Length = 436 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L + + G TFRSG H P FT VE++G+ +K+ AE+ AA Sbjct: 88 YKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFTGTVELAGITFTGDPAKNKKQAEKNAAM 147 Query: 218 EV---LKRE 223 LK+ Sbjct: 148 AAWSSLKQL 156 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAAEVALNAL 68 >gi|18401724|ref|NP_565672.1| DRB2 (DSRNA-BINDING PROTEIN 2); double-stranded RNA binding [Arabidopsis thaliana] gi|75266001|sp|Q9SKN2|DRB2_ARATH RecName: Full=Double-stranded RNA-binding protein 2; AltName: Full=dsRNA-binding protein 2; Short=AtDRB2 gi|4432839|gb|AAD20688.1| expressed protein [Arabidopsis thaliana] gi|14334606|gb|AAK59481.1| unknown protein [Arabidopsis thaliana] gi|17065634|gb|AAL33811.1| unknown protein [Arabidopsis thaliana] gi|330253020|gb|AEC08114.1| dsRNA-binding protein 2 [Arabidopsis thaliana] Length = 434 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L + + G TFRSG H P FT VE++G+ +K+ AE+ AA Sbjct: 88 YKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFTGTVELAGITFTGDPAKNKKQAEKNAAM 147 Query: 218 EV---LKRE 223 LK+ Sbjct: 148 AAWSSLKQL 156 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAAEVALNAL 68 >gi|194864148|ref|XP_001970794.1| GG10841 [Drosophila erecta] gi|190662661|gb|EDV59853.1| GG10841 [Drosophila erecta] Length = 1304 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + + G +K+ AE+ A + Sbjct: 5 SFLYEFCAKSRIEPKFDIRQTGPKNRQRFLCEVRVDPNIYIGVGNSTNKKDAEKNACRD 63 >gi|294881176|ref|XP_002769282.1| hypothetical protein Pmar_PMAR007696 [Perkinsus marinus ATCC 50983] gi|239872560|gb|EER02000.1| hypothetical protein Pmar_PMAR007696 [Perkinsus marinus ATCC 50983] Length = 1394 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%) Query: 14 GYAF-ANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLF 60 GY F + LL ++LTH+S++ S S ERLE++GD +LG ++ LF Sbjct: 1136 GYVFEKHPWLLTESLTHASVTSVSASYSNERLEWIGDAVLGAVVLQWLF 1184 >gi|194764929|ref|XP_001964580.1| GF22976 [Drosophila ananassae] gi|190614852|gb|EDV30376.1| GF22976 [Drosophila ananassae] Length = 649 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 19/75 (25%), Gaps = 1/75 (1%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + + T P ++ V + L G SK Sbjct: 368 WIMNPNGKSYVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVKNLKYGTGFGTSK 426 Query: 209 RAAEQVAAAEVLKRE 223 + A+ AA L+ Sbjct: 427 KQAKSEAARITLEIL 441 >gi|49237378|ref|YP_031659.1| ribonuclease III [Frog virus 3] gi|228861295|ref|YP_002854318.1| ribonuclease III [Soft-shelled turtle iridovirus] gi|47060196|gb|AAT09740.1| ribonuclease III [Frog virus 3] gi|194307575|gb|ACF42305.1| ribonuclease III [Soft-shelled turtle iridovirus] Length = 371 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 71/217 (32%), Gaps = 17/217 (7%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVRF 75 R L K T S++ ++YE LE +GD + + F + ++ Sbjct: 25 RDLWNKVFTPKSVN--PDDNYEALEIVGDGVASYFFPSYFLKRFPQLNSPKGVKTVARLK 82 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 S ++ S +A L FIR S S S+ D E+ + A+ + E + Sbjct: 83 IYYGSKKSFSSIADSLGFWKFIR--SGPVPVNPSTRESLLEDTFEAFLGAVCMAVDDEYS 140 Query: 136 GT-FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD----HDPRFT 190 + + + G D H T Sbjct: 141 IDGLGAVVAYKIMADIFDDMDISLEYTALFDTVTRLKELMDVKKDVLGGDAVYNHRGDTT 200 Query: 191 VVVEISGLAPAQGMDCSKRA-AEQVA--AAEVLKREG 224 V + + G + KR A++ A A ++L+REG Sbjct: 201 V-ITLKGRVIGKATGAIKRDRAKEAAGQALDLLRREG 236 >gi|195475660|ref|XP_002090102.1| GE19435 [Drosophila yakuba] gi|194176203|gb|EDW89814.1| GE19435 [Drosophila yakuba] Length = 1283 Score = 48.8 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + + G +K+ AE+ A + Sbjct: 5 SFLYEFCAKSRVEPKFDIRQTGPKNRQRFLCEVRVDPNIYIGVGNSTNKKDAEKNACRD 63 >gi|297722713|ref|NP_001173720.1| Os03g0854400 [Oryza sativa Japonica Group] gi|255675058|dbj|BAH92448.1| Os03g0854400 [Oryza sativa Japonica Group] Length = 176 Score = 48.8 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 3/135 (2%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +TL+ +I Y F LL +A+TH+S S + L LG + Sbjct: 34 LATLQNQIAYRFHAPDLLRRAMTHASYSRENGRA---LAVLGLAASQSAAALRALAADHD 90 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 A +S R C A + + S +RV++ + + ++ ++ Sbjct: 91 ASASAVSRRARDASGEAACVAAAARVGIPSIVRVAAGTKPTAPPVVCGALRALIGAVAVD 150 Query: 126 LYLDGGIEVAGTFVD 140 E + Sbjct: 151 ANSTHAAEEVFWKLH 165 >gi|159474642|ref|XP_001695434.1| double stranded RNA-binding protein [Chlamydomonas reinhardtii] gi|158275917|gb|EDP01692.1| double stranded RNA-binding protein [Chlamydomonas reinhardtii] Length = 1520 Score = 48.8 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 20/35 (57%) Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + V G +G D +K+ A+++AA E L+ GI Sbjct: 1089 MAVIYDGKEIGRGADKTKKDAKRLAAIEALRHLGI 1123 >gi|27262835|emb|CAD59426.1| dsRNA-binding protein [Brassica oleracea var. gongylodes] gi|27262839|emb|CAD59428.1| dsRNA-binding protein [Brassica oleracea var. gemmifera] Length = 283 Score = 48.8 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKRE 223 GP H P F V ++ + +++AAEQ AA L+ Sbjct: 39 EGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALQEL 82 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 25/72 (34%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K LQE+A P Y+ P+FT VEI G+ +K+ A Sbjct: 97 HEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEA 156 Query: 212 EQVAAAEVLKRE 223 E A L Sbjct: 157 EISAGRTALIAI 168 >gi|27262837|emb|CAD59427.1| dsRNA-binding protein [Brassica oleracea var. italica] Length = 283 Score = 48.8 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKRE 223 GP H P F V ++ + +++AAEQ AA L+ Sbjct: 39 EGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALQEL 82 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 25/72 (34%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K LQE+A P Y+ P+FT VEI G+ +K+ A Sbjct: 97 HEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEA 156 Query: 212 EQVAAAEVLKRE 223 E A L Sbjct: 157 EISAGRTALIAI 168 >gi|27262831|emb|CAD59424.1| dsRNA-binding protein [Brassica oleracea var. acephala] Length = 283 Score = 48.8 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKRE 223 GP H P F V ++ + +++AAEQ AA L+ Sbjct: 39 EGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALQEL 82 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 25/72 (34%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K LQE+A P Y+ P+FT VEI G+ +K+ A Sbjct: 97 HEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEA 156 Query: 212 EQVAAAEVLKRE 223 E A L Sbjct: 157 EISAGRTALIAI 168 >gi|326468912|gb|EGD92921.1| RNase3 domain-containing protein [Trichophyton tonsurans CBS 112818] gi|326480108|gb|EGE04118.1| double-strand-specific pac1 ribonuclease [Trichophyton equinum CBS 127.97] Length = 399 Score = 48.8 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 29/225 (12%) Query: 23 LEKA-LTH-------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 L+ A TH + + +++Y+RLE LGD + L+ + L++ +F + G+++ Sbjct: 138 LKTAVFTHTGIMERGPVSTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKIAQA 197 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 ++V ET ++ A ++ SSD++ V T + DV E+ +AA + Sbjct: 198 RETMVKNETLAEYAIAYGFDQLLKTSSDIK-SVPKRWTKVMGDVFEAYVAAAIIADPKGG 256 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-----DHDPR- 188 + K + + + G + PR Sbjct: 257 LRAVESWLSQLWLPKLAEVKVPLASVTLAQGSKASFKDKLAATVMSRGIKLQYLEEKPRQ 316 Query: 189 --------FTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220 F + ++G G SK A AA L Sbjct: 317 REGGLVTSF-IGAYLTGWGYEKKLLGSGSGLSKSEAGNEAALNAL 360 >gi|224104957|ref|XP_002313634.1| predicted protein [Populus trichocarpa] gi|222850042|gb|EEE87589.1| predicted protein [Populus trichocarpa] Length = 484 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 2/93 (2%) Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 + + + ++ +SG H P Sbjct: 171 WKNCDLPTYYNTREGPSHAPCFKATDDSGFYKNALQELAQREDLSMPVYKIIKSGALHMP 230 Query: 188 RFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEV 219 F VEI G + SK+ AE +A Sbjct: 231 TFFSYVEIEGEKFYGKA-GKSKKEAELKSARAA 262 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 181 SGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219 GPDH P F V ++G++ + S + A AA Sbjct: 25 DGPDHTPCFKASVYVNGISFHSSASCKSSKDAHNDAAKMA 64 >gi|198457607|ref|XP_001360731.2| GA19106 [Drosophila pseudoobscura pseudoobscura] gi|198136042|gb|EAL25306.2| GA19106 [Drosophila pseudoobscura pseudoobscura] Length = 1008 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L +T +Y++T GP H FTV +++ + A+ +AA+ Sbjct: 316 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLKLGDEEY-SADGFKIKKAQHMAAS 374 Query: 218 EVLK 221 ++ Sbjct: 375 RAIE 378 Score = 44.5 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + T+L + + P +++ ++G + F + V SG A+G SK+ A+ Sbjct: 717 ENPITKLIQLQQTRKEKEPIFELIAKNGNEASRRREFVMEVSASGTT-ARGTGNSKKLAK 775 Query: 213 QVAAAEVLKRE 223 + AA +L+ Sbjct: 776 RSAAQALLELL 786 Score = 42.6 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV--- 219 K +T +KV GP H F + G +G K+ +++ +A ++ Sbjct: 591 HEIGIKRNMTVHFKVLREDGPAHMKNFITACVV-GSIVTEGEGNGKKLSKKRSAEKMLTE 649 Query: 220 LKRE 223 L++ Sbjct: 650 LQKL 653 >gi|195383442|ref|XP_002050435.1| stau [Drosophila virilis] gi|194145232|gb|EDW61628.1| stau [Drosophila virilis] Length = 1100 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 656 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKLSKKRAAEKMLSE 714 Query: 223 E 223 Sbjct: 715 L 715 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L +T +Y++T GP H FTV +++ + A+ +AA+ Sbjct: 378 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAAS 436 Query: 218 EVLK 221 + ++ Sbjct: 437 KAIE 440 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + T+L + + P +++ ++G + F + V SG A+G SK+ A+ Sbjct: 783 ENPITKLIQLQQTRKEKEPIFELIAKNGNETSRRREFVMEVSASGS-IARGTGNSKKLAK 841 Query: 213 QVAAAEVLKRE 223 + AA +L+ Sbjct: 842 RNAAQALLELL 852 >gi|7229532|gb|AAF42865.1|AF225924_1 staufen [Drosophila virilis] Length = 1062 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 613 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKLSKKRAAEKMLSE 671 Query: 223 E 223 Sbjct: 672 L 672 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L +T +Y++T GP H FTV +++ + A+ +AA+ Sbjct: 335 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAAS 393 Query: 218 EVLK 221 + ++ Sbjct: 394 KAIE 397 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + T+L + + P +++ ++G + F + V SG A+G SK+ A+ Sbjct: 740 ENPITKLIQLQQTRKEKEPIFELIAKNGNETSRRREFVMEVSASGS-IARGTGNSKKLAK 798 Query: 213 QVAAAEVLKRE 223 + AA +L+ Sbjct: 799 RNAAQALLELL 809 >gi|170042672|ref|XP_001849041.1| ribonuclease iii [Culex quinquefasciatus] gi|167866168|gb|EDS29551.1| ribonuclease iii [Culex quinquefasciatus] Length = 300 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 22/160 (13%) Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 + L++ ++S V+ + + +L + S+ S+ T +AD++E+ Sbjct: 101 CFLFRIPALTLLWSSQVNNRNQAVICDDLGMTSYAVYSNKQADLK----TKERADLLEAF 156 Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + ALY+D G+ +R T + A + +V +G Sbjct: 157 LGALYVDKGL------------------NTAKRSPTTGMTRRASCSRAGHSDLQVIECNG 198 Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P + +T+ V G A S + E AA + L+ Sbjct: 199 PTNTRVYTMAVYFRGKHLACCNGHSMQQVEINAAKQALEN 238 >gi|326429032|gb|EGD74602.1| DEAH box polypeptide 34 [Salpingoeca sp. ATCC 50818] Length = 1912 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 16/46 (34%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 GP H P F V + L K+ A Q A + ++ Sbjct: 25 DPVGPPHMPTFECTVSVGSLVSCSARGGGKKTAMQDACKQAVEALK 70 >gi|242032197|ref|XP_002463493.1| hypothetical protein SORBIDRAFT_01g000740 [Sorghum bicolor] gi|241917347|gb|EER90491.1| hypothetical protein SORBIDRAFT_01g000740 [Sorghum bicolor] Length = 183 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 20/33 (60%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE 38 + L+ R+GYAF SLL +A+TH+S S Sbjct: 41 LAALQSRVGYAFRAPSLLRRAMTHASYSRENGR 73 >gi|195436531|ref|XP_002066221.1| GK22054 [Drosophila willistoni] gi|194162306|gb|EDW77207.1| GK22054 [Drosophila willistoni] Length = 1106 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L +T +Y++T GP H FTV +++ + A+ +AA+ Sbjct: 353 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLKLGDEEY-SADGFKIKKAQHLAAS 411 Query: 218 EVLK 221 + ++ Sbjct: 412 KAIE 415 Score = 44.5 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 42/182 (23%), Gaps = 5/182 (2%) Query: 46 LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105 LG + + R+ A S + Sbjct: 535 LGGPPMHPHGIYGGHQRTGQYPAKYHASRYALPPPPPHLMHGAYGAHHTPMPVTPSKITL 594 Query: 106 DVCSFMT----SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 V A + + T + + + + Sbjct: 595 FVGKQKFVGTGRTLQQAKHDAAARALQVLKTQASATATSASDEALEDSMDEGDKKSPISQ 654 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K +T +KV GP H F + G +G K+ +++ +A ++L Sbjct: 655 VHEIGIKRSMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKISKKRSAEKMLI 713 Query: 222 RE 223 Sbjct: 714 EL 715 Score = 37.6 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 5/88 (5%) Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR----FTVVVEIS 196 + G R + P + + G H P + + + Sbjct: 538 PPMHPHGIYGGHQRTGQYPAKYHASRYALPPPPPHLMHGAYGAHHTPMPVTPSKITLFV- 596 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKREG 224 G G + + A+ AAA L+ Sbjct: 597 GKQKFVGTGRTLQQAKHDAAARALQVLK 624 Score = 36.1 bits (81), Expect = 3.6, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + T+L + + P +++ ++G D F + V +G A+G SK+ A+ Sbjct: 782 ENPITKLIQLQQNRKDKEPIFELIAKNGNDTSRRREFVMEVSANGST-ARGTGNSKKLAK 840 Query: 213 QV 214 + Sbjct: 841 RN 842 >gi|10438400|dbj|BAB15238.1| unnamed protein product [Homo sapiens] gi|37779134|gb|AAO86726.1| LP4941 protein [Homo sapiens] Length = 303 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 72 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 106 >gi|157382880|gb|ABV48875.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157382874|gb|ABV48872.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157382872|gb|ABV48871.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157382868|gb|ABV48869.1| maleless [Drosophila melanogaster] gi|157382870|gb|ABV48870.1| maleless [Drosophila melanogaster] gi|157382876|gb|ABV48873.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157382866|gb|ABV48868.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157382862|gb|ABV48866.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157382860|gb|ABV48865.1| maleless [Drosophila melanogaster] gi|157382864|gb|ABV48867.1| maleless [Drosophila melanogaster] gi|157382878|gb|ABV48874.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157382858|gb|ABV48864.1| maleless [Drosophila melanogaster] Length = 1286 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157382856|gb|ABV48863.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157382854|gb|ABV48862.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157382852|gb|ABV48861.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157824892|gb|ABV82525.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157824890|gb|ABV82524.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157824888|gb|ABV82523.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157824886|gb|ABV82522.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157824884|gb|ABV82521.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157824882|gb|ABV82520.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157824878|gb|ABV82518.1| maleless [Drosophila melanogaster] gi|157824880|gb|ABV82519.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157824876|gb|ABV82517.1| maleless [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157906|gb|AAC41573.1| maleless protein [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|62474635|ref|NP_476642.3| maleless, isoform B [Drosophila melanogaster] gi|61678431|gb|AAM68336.3| maleless, isoform B [Drosophila melanogaster] Length = 226 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|17136342|ref|NP_476641.1| maleless, isoform A [Drosophila melanogaster] gi|76803804|sp|P24785|MLE_DROME RecName: Full=Dosage compensation regulator; AltName: Full=ATP-dependent RNA helicase mle; AltName: Full=Protein male-less; AltName: Full=Protein maleless; AltName: Full=Protein no action potential gi|7302201|gb|AAF57297.1| maleless, isoform A [Drosophila melanogaster] Length = 1293 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|255934909|ref|XP_002558481.1| Pc13g00300 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583101|emb|CAP91099.1| Pc13g00300 [Penicillium chrysogenum Wisconsin 54-1255] Length = 144 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 6/129 (4%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +E + Y F ++SLL+KA + + ++R +GD L L+++ L + S Sbjct: 10 IRAIESILNYEFHDKSLLDKAFEAP-GATEARGGHQRQALIGDAALKLVLTELGYEGNAS 68 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 E +S S VS E ++ L L ++ R++ S+ A +E++I A Sbjct: 69 TGEITISR--GSRVSNENLKRLGESLGLNAYFRLNPA---SQGVVPRSMMATTMEAIIGA 123 Query: 126 LYLDGGIEV 134 +YLD G ++ Sbjct: 124 VYLDSGKDM 132 >gi|167535410|ref|XP_001749379.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772245|gb|EDQ85900.1| predicted protein [Monosiga brevicollis MX1] Length = 234 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 SGP+H +T + + G SK+ +EQ AA ++ Sbjct: 55 YEHRASGPEHSLAWTSTCRLYDQSVYTGYGVSKKMSEQNAAHNAVQGLK 103 Score = 39.5 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%) Query: 191 VVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + V + + + G +KR A+Q AA ++L + T Sbjct: 194 IGVYVKSRNQVFLGVGSAATKRDADQRAAKDLLHKLKRTT 233 >gi|85719268|ref|YP_460036.1| VP11 [Liao ning virus] gi|56785927|gb|AAW29094.1| VP11 [Liao ning virus] Length = 198 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y+ GP H+ FT+ +G+ SK+ A VAA ++L Sbjct: 28 YEDVGFEGPPHNRSFTISATFRDKKY-EGIGPSKKVARSVAANKIL 72 >gi|312377844|gb|EFR24577.1| hypothetical protein AND_10726 [Anopheles darlingi] Length = 199 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 4/62 (6%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV---LKR 222 + V +GP H RF V + G G +K+ +E+ AA + L R Sbjct: 12 CQKNVVEPSFEVRPTGPKHRQRFLCEVRLPGYNYTGVGNSTNKKDSEKNAARDFVHYLVR 71 Query: 223 EG 224 G Sbjct: 72 IG 73 >gi|208690895|gb|ACI31223.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Callicebus moloch] Length = 551 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E + +GP+ F ++ +K+ A+Q+AA + Sbjct: 115 VNYEQCASGVNGPEG---FHYKCKVGQKEYGIATGSTKQEAKQLAAKLAYLQI 164 Score = 40.3 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 13/28 (46%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I G + S Sbjct: 32 NSGPPHDRRFTFQVIIDGREFPEAEGRS 59 >gi|327301473|ref|XP_003235429.1| RNase3 domain-containing protein [Trichophyton rubrum CBS 118892] gi|326462781|gb|EGD88234.1| RNase3 domain-containing protein [Trichophyton rubrum CBS 118892] Length = 399 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 29/225 (12%) Query: 23 LEKA-LTH-------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 L+ A TH + + +++Y+RLE LGD + L+ + L++ +F + G+++ Sbjct: 138 LKTAVFTHTGIMERGPISTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKIAQA 197 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 ++V ET ++ A ++ SSD++ V T + DV E+ +AA + Sbjct: 198 RETMVKNETLAEYAVAYGFDQLLKTSSDIK-SVPKRWTKVMGDVFEAYVAAAIIADPKGG 256 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-----DHDPR- 188 + K + + + G + PR Sbjct: 257 LRAVESWLTQLWLPKLAEVKVPLASVTLAQGSKASFKDKLAATVMSRGIKLQYLEEKPRQ 316 Query: 189 --------FTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220 F + ++G G SK A AA L Sbjct: 317 REGGLVTSF-IGAYLTGWGYEKKLLGSGSGLSKSEAGNEAALNAL 360 >gi|195027427|ref|XP_001986584.1| GH20445 [Drosophila grimshawi] gi|193902584|gb|EDW01451.1| GH20445 [Drosophila grimshawi] Length = 1053 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L +T +Y++T GP H FTV +++ + A+ +AA+ Sbjct: 327 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAAS 385 Query: 218 EVLK 221 + ++ Sbjct: 386 KAIE 389 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + T+L + + P +++ ++G + F + V SG A+G SK+ A+ Sbjct: 738 ENPITKLIQLQQTRKEKEPIFELIAKNGNESSRRREFVIEVCASGN-IARGTGNSKKLAK 796 Query: 213 QVAAAEVLKRE 223 + AA +L+ Sbjct: 797 RNAAQALLELL 807 Score = 43.0 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 1/74 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + + + + +T +KV GP H F + G +G K+ Sbjct: 595 MDENDKKSPISQVHEIGIRRNMTVHFKVLREEGPAHMKNFITACIV-GAIVTEGEGNGKK 653 Query: 210 AAEQVAAAEVLKRE 223 +++ +A ++L Sbjct: 654 LSKKRSAEKMLIEL 667 >gi|194755679|ref|XP_001960111.1| GF13203 [Drosophila ananassae] gi|190621409|gb|EDV36933.1| GF13203 [Drosophila ananassae] Length = 1036 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L +T +Y++T GP H FTV +++ + A+ +AA+ Sbjct: 318 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAAS 376 Query: 218 EVLK 221 + ++ Sbjct: 377 KAIE 380 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 599 MTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKLSKKRAAEKMLIEL 650 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + T++ + + P +++ ++G + F + V SG A+G SK+ A+ Sbjct: 725 ENPITKVIQLQQMRKEKEPIFELIAKNGNETSRRREFVMEVTASGST-ARGTGNSKKLAK 783 Query: 213 QVAAAEVLKRE 223 + AA +L+ Sbjct: 784 RNAAQALLELL 794 >gi|195584465|ref|XP_002082027.1| GD25416 [Drosophila simulans] gi|194194036|gb|EDX07612.1| GD25416 [Drosophila simulans] Length = 1035 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L +T +Y++T GP H FTV + + + A+ +AA+ Sbjct: 314 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAAS 372 Query: 218 EVLK 221 + ++ Sbjct: 373 KAIE 376 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV--- 219 K +T +KV GP H F + G +G K+ +++ AA ++ Sbjct: 586 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLVE 644 Query: 220 LKRE 223 L++ Sbjct: 645 LQKL 648 Score = 43.0 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSK 208 + T+L + + P +++ ++G + F + V SG A+G SK Sbjct: 708 MDDADNPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASGST-ARGTGNSK 766 Query: 209 RAAEQVAAAEVLKRE 223 + A++ AA + + Sbjct: 767 KLAKRNAAQALFELL 781 >gi|195487615|ref|XP_002091980.1| GE13936 [Drosophila yakuba] gi|194178081|gb|EDW91692.1| GE13936 [Drosophila yakuba] Length = 1037 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L +T +Y++T GP H FTV + + + A+ +AA+ Sbjct: 316 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAAS 374 Query: 218 EVLK 221 + ++ Sbjct: 375 KAIE 378 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 588 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLIE 646 Query: 223 E 223 Sbjct: 647 L 647 Score = 42.2 bits (97), Expect = 0.047, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + T+L + + P +++ ++G + F + V SG A+G SK+ A+ Sbjct: 714 DNPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASGST-ARGTGNSKKLAK 772 Query: 213 QVAAAEVLKRE 223 + AA + + Sbjct: 773 RNAAQALFELL 783 >gi|195335472|ref|XP_002034389.1| GM19927 [Drosophila sechellia] gi|194126359|gb|EDW48402.1| GM19927 [Drosophila sechellia] Length = 1035 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L +T +Y++T GP H FTV + + + A+ +AA+ Sbjct: 314 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAAS 372 Query: 218 EVLK 221 + ++ Sbjct: 373 KAIE 376 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV--- 219 K +T +KV GP H F + G +G K+ +++ AA ++ Sbjct: 586 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLVE 644 Query: 220 LKRE 223 L++ Sbjct: 645 LQKL 648 Score = 43.0 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSK 208 + T+L + + P +++ ++G + F + V SG A+G SK Sbjct: 708 MDDADNPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASGST-ARGTGNSK 766 Query: 209 RAAEQVAAAEVLKRE 223 + A++ AA + + Sbjct: 767 KLAKRNAAQALFELL 781 >gi|194880953|ref|XP_001974617.1| GG20993 [Drosophila erecta] gi|190657804|gb|EDV55017.1| GG20993 [Drosophila erecta] Length = 1034 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L +T +Y++T GP H FTV + + + A+ +AA+ Sbjct: 313 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAAS 371 Query: 218 EVLK 221 + ++ Sbjct: 372 KAIE 375 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 585 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLIE 643 Query: 223 E 223 Sbjct: 644 L 644 Score = 42.2 bits (97), Expect = 0.047, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + T+L + + P +++ ++G + F + V SG A+G SK+ A+ Sbjct: 711 DNPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASGST-ARGTGNSKKLAK 769 Query: 213 QVAAAEVLKRE 223 + AA + + Sbjct: 770 RNAAQALFELL 780 >gi|157939656|ref|YP_001497028.1| dsRNA-binding [Tanapox virus] gi|146746372|gb|ABQ43508.1| dsRNA-binding [Tanapox virus] gi|146746528|gb|ABQ43663.1| dsRNA-binding [Tanapox virus] Length = 181 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 29/99 (29%) Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 + + + K +D + + +F Sbjct: 69 WFKNYNGEHDSKLEQKHHIPNHIFSDTVPYKKIINWKDKNPCIVLNEYCQFTCRDWSIDI 128 Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 SG H P FT V ISG+ + +KR A+ A+ Sbjct: 129 TTSGKSHCPMFTATVIISGIKFKPAIGNTKREAKYNASK 167 >gi|156373860|ref|XP_001629528.1| predicted protein [Nematostella vectensis] gi|156216530|gb|EDO37465.1| predicted protein [Nematostella vectensis] Length = 949 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Query: 189 FTVVVEISGLAPAQGMDCS-KRAAEQVAAAEVLKREGI 225 F V G+ + S K+AAEQ AA L+ G+ Sbjct: 168 FIAEVNFEGVRYKSKIAHSTKKAAEQNAAESALQALGL 205 Score = 42.2 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 15/36 (41%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V G G ++AAEQ AA + LK Sbjct: 53 HFVSNVLAVGQNFTGGYCSKRKAAEQDAAKQALKNI 88 >gi|195401473|ref|XP_002059337.1| GJ18398 [Drosophila virilis] gi|194142343|gb|EDW58749.1| GJ18398 [Drosophila virilis] Length = 1362 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 +++ T +GP H RF V + A G +K+ AE+ A+ + Sbjct: 5 SFLFSYCAKNQTEPKFEVRPTGPKHRQRFLCEVRVDQCPYVAVGNSTNKKDAEKNASRD 63 >gi|323332393|gb|EGA73802.1| Mrpl15p [Saccharomyces cerevisiae AWRI796] gi|323353848|gb|EGA85703.1| Mrpl15p [Saccharomyces cerevisiae VL3] Length = 248 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 14/135 (10%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 + G +N L+ + LTH S +H + E+L LG + L L + A+ E Sbjct: 72 KYGINLSN-ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 130 Query: 72 SVRFNSL-------------VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 + L F ++ ++ + T+I A V Sbjct: 131 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDPIKDGHINGETTIFASV 190 Query: 119 VESLIAALYLDGGIE 133 + + I A+ G E Sbjct: 191 LNAFIGAILSTNGSE 205 >gi|302816661|ref|XP_002990009.1| hypothetical protein SELMODRAFT_130786 [Selaginella moellendorffii] gi|300142320|gb|EFJ09022.1| hypothetical protein SELMODRAFT_130786 [Selaginella moellendorffii] Length = 127 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 7/126 (5%) Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 Y F + +LL+ ALTHSS S + L LG I+ + A + EL Sbjct: 1 YKFNDSTLLQDALTHSSYSRH---NNGPLHLLGVSIIRASVYKHYLAKNRDATKEELEAM 57 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 +SL S C++ A L L IR + + A L A+ +DG + Sbjct: 58 SSSLSSTTACARRASGLGLDKLIRADVPVD----RKSDKVLAVAFHVLFGAIAMDGSADQ 113 Query: 135 AGTFVD 140 A + Sbjct: 114 AMSVFW 119 >gi|26324344|dbj|BAC25926.1| unnamed protein product [Mus musculus] Length = 125 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + L + P+YK+ SGP H F+V + + + S + Sbjct: 1 MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59 Query: 210 AAEQVAAAEVL 220 A+Q A + L Sbjct: 60 KAQQAVANKAL 70 >gi|19851824|gb|AAL99894.1| interferon resistance protein [goat proliferative dermatitis virus] Length = 183 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 21/54 (38%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + E+ T G DH P FT + I G A SK+ A A A L Sbjct: 119 MMTHRSLEFCETRSGGKDHCPLFTCTITIFGKVVAAADGASKKLARHTACASAL 172 >gi|225734446|gb|ACO25214.1| RNase III [Epizootic haematopoietic necrosis virus] Length = 372 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 71/217 (32%), Gaps = 17/217 (7%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVRF 75 R L K T S++ ++YE LE +GD + + F + ++ Sbjct: 25 RDLWNKVFTPKSVN--PDDNYEALEIMGDGVASYFFPSYFLKRFPQLNSPKGVKTVARLK 82 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 S ++ S +A L FIR S S S+ D E+ + A+ E + Sbjct: 83 IYYGSKKSFSSIADSLGFWKFIR--SGPVPVNPSTRESLLEDTFEAFLGAVCTAVDDEYS 140 Query: 136 GT-----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 K + + + + DH T Sbjct: 141 IDGLGAVVAYKIMADIFDDMDISLEYTALFDTVTRLKELMDVKKDVLGGDAVYDHRGDTT 200 Query: 191 VVVEISGLAPAQGMDCSKRA-AEQVA--AAEVLKREG 224 V + + G + KR A++ A A ++L+REG Sbjct: 201 V-ITLKGRVIGKATGAIKRDRAKEAAGQALDLLRREG 236 >gi|268561546|ref|XP_002646471.1| Hypothetical protein CBG19440 [Caenorhabditis briggsae] gi|187024149|emb|CAP36691.1| CBR-ADR-1 protein [Caenorhabditis briggsae AF16] Length = 1012 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 1/36 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 P F I G SK+ A+ AA LKR Sbjct: 608 PVFYCDCVIDEERF-TGSGRSKKLAKNAAAVVALKR 642 >gi|30693732|ref|NP_198923.2| DRB5 (DSRNA-BINDING PROTEIN 5); double-stranded RNA binding [Arabidopsis thaliana] gi|75244423|sp|Q8GY79|DRB5_ARATH RecName: Full=Double-stranded RNA-binding protein 5; AltName: Full=dsRNA-binding protein 5; Short=AtDRB5 gi|26450682|dbj|BAC42450.1| unknown protein [Arabidopsis thaliana] gi|32189297|gb|AAP75803.1| At5g41070 [Arabidopsis thaliana] gi|332007250|gb|AED94633.1| dsRNA-binding protein 5 [Arabidopsis thaliana] Length = 393 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 SG H P F+ VE++G+ +K+ AE+ AA LK+ Sbjct: 111 SGSCHFPGFSCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM 156 Score = 42.2 bits (97), Expect = 0.047, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAAAEVSL 65 >gi|159795592|pdb|2YT4|A Chain A, Crystal Structure Of Human Dgcr8 Core Length = 232 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 54 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 88 >gi|302819687|ref|XP_002991513.1| hypothetical protein SELMODRAFT_429800 [Selaginella moellendorffii] gi|300140715|gb|EFJ07435.1| hypothetical protein SELMODRAFT_429800 [Selaginella moellendorffii] Length = 850 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 5/74 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +LE ++ Y F NRSLL +A+TH+S + Y+ G L I + N + Sbjct: 649 LESLEHKLQYKFQNRSLLVEAITHAS-QPNCLLCYQ----HGSVELDCEIRKFVQNVKEK 703 Query: 66 AKEGELSVRFNSLV 79 + V Sbjct: 704 PDASCFDDLSSPKV 717 >gi|256052736|ref|XP_002569908.1| hypothetical protein [Schistosoma mansoni] gi|227284660|emb|CAY17406.1| expressed protein [Schistosoma mansoni] Length = 732 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 1/67 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K+ + V + +++ + + V I+G G SK+ A AA Sbjct: 441 KSYVCILHEYCQNVIRRPPTYQTTVLENEKNPYQMTVFINGNPYGTGAGQSKKCARLEAA 500 Query: 217 AEVLKRE 223 + L+ Sbjct: 501 RKALEVL 507 >gi|33415073|gb|AAQ18044.1| double-stranded RNA-binding protein [Human orf virus] Length = 183 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 21/54 (38%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 E+ T G DH PRFT + IS A SK+ A A + L Sbjct: 119 MMTRRPLEFCETRSGGEDHCPRFTCTITISEKVVAAADGASKKLARHTACSSAL 172 >gi|321253833|ref|XP_003192867.1| hypothetical protein CGB_C5530W [Cryptococcus gattii WM276] gi|317459336|gb|ADV21080.1| hypothetical protein CNC03670 [Cryptococcus gattii WM276] Length = 916 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR---- 74 + L +ALT S + +YERLE LGD +L I+ ++ H A E S++ Sbjct: 444 HPELALQALTAPSSVNVTPWTYERLEILGDTLLKFFITIHVYLHGGGANSREDSLKVWQD 503 Query: 75 FNSLVSAETCSQVARELDLASFIR 98 + LVS T + A +L L ++R Sbjct: 504 RHKLVSNRTLTANAIKLGLVDYVR 527 >gi|126324741|ref|XP_001376883.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8 [Monodelphis domestica] Length = 907 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 21/60 (35%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + + TF + F V I G+ G SK+ A+ AA L+ Sbjct: 651 HEYMQRVLKVRPVYTFFECENPSEPFGASVTIDGVTYGAGTASSKKLAKNKAARATLEIL 710 >gi|240848923|ref|NP_001155644.1| protein kinase, interferon inducible double stranded RNA dependent activator-like [Acyrthosiphon pisum] gi|239790447|dbj|BAH71784.1| ACYPI005748 [Acyrthosiphon pisum] Length = 339 Score = 48.0 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 1/89 (1%) Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 D + + +A +L + PE+ + G H FT+ Sbjct: 98 DFKQWDFDNHVVSPFDNNIKVNAVGQLNDICTNNKLGLPEFNLVREEGQAHAKLFTISCH 157 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ +K+ A+ +AA +++ + Sbjct: 158 VA-KMIETATHKTKKQAKHLAAVQMVNKL 185 Score = 42.6 bits (98), Expect = 0.038, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%) Query: 174 EYKVTFRSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +G H F + + A G SK+ A+ VAA +LK Sbjct: 38 PQYDLIHNGVSHSKVSFKYSLTLDDYV-AVGDGSSKKEAKHVAALNLLK 85 >gi|213495740|gb|ACJ49090.1| double-stranded RNA activated protein kinase [Mustela putorius furo] Length = 78 Score = 48.0 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 22 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 60 >gi|159164135|pdb|2DIX|A Chain A, Solution Structure Of The Dsrm Domain Of Protein Activator Of The Interferon-Induced Protein Kinase Length = 84 Score = 48.0 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 37 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 75 >gi|119631442|gb|EAX11037.1| protein kinase, interferon-inducible double stranded RNA dependent activator, isoform CRA_d [Homo sapiens] Length = 105 Score = 48.0 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 H P FT V + + G SK+ A+ AA + Sbjct: 62 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100 >gi|224140399|ref|XP_002323570.1| predicted protein [Populus trichocarpa] gi|222868200|gb|EEF05331.1| predicted protein [Populus trichocarpa] Length = 563 Score = 48.0 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 15/34 (44%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 R V +G GM +++ A+Q AA L Sbjct: 467 RRCRSKVLFTGEKIGVGMGKTRKDAQQQAAENAL 500 >gi|302819689|ref|XP_002991514.1| hypothetical protein SELMODRAFT_429802 [Selaginella moellendorffii] gi|300140716|gb|EFJ07436.1| hypothetical protein SELMODRAFT_429802 [Selaginella moellendorffii] Length = 569 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 5/74 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +LE ++ Y F NRSLL +A+TH+S + Y+ G L I + N + Sbjct: 387 LESLEHKLQYKFQNRSLLVEAITHAS-QPNCLLCYQ----HGSVELDCEIRKFVQNVKEK 441 Query: 66 AKEGELSVRFNSLV 79 V Sbjct: 442 PDASCFEDLSAPKV 455 >gi|156839185|ref|XP_001643286.1| hypothetical protein Kpol_1027p2 [Vanderwaltozyma polyspora DSM 70294] gi|156113890|gb|EDO15428.1| hypothetical protein Kpol_1027p2 [Vanderwaltozyma polyspora DSM 70294] Length = 242 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 4/75 (5%) Query: 7 STLEKRIG---YAFANRS-LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 ++K + Y + LL + TH S +H + E+L LG + L L + Sbjct: 59 EKIDKILNLSKYDIKVPNDLLLQCFTHKSFAHGIKPYNEKLSLLGLQFLKLQAGIYSISQ 118 Query: 63 FDSAKEGELSVRFNS 77 + + Sbjct: 119 SVNLSPVQAGKIQKQ 133 >gi|207342841|gb|EDZ70480.1| YLR312W-Ap-like protein [Saccharomyces cerevisiae AWRI1631] gi|256270407|gb|EEU05604.1| Mrpl15p [Saccharomyces cerevisiae JAY291] gi|259148294|emb|CAY81541.1| Mrpl15p [Saccharomyces cerevisiae EC1118] gi|323336359|gb|EGA77627.1| Mrpl15p [Saccharomyces cerevisiae Vin13] gi|323347380|gb|EGA81652.1| Mrpl15p [Saccharomyces cerevisiae Lalvin QA23] Length = 253 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 14/135 (10%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 + G +N L+ + LTH S +H + E+L LG + L L + A+ E Sbjct: 77 KYGINLSN-ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 135 Query: 72 SVRFNSL-------------VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 + L F ++ ++ + T+I A V Sbjct: 136 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDPIKDGHINGETTIFASV 195 Query: 119 VESLIAALYLDGGIE 133 + + I A+ G E Sbjct: 196 LNAFIGAILSTNGSE 210 >gi|198423460|ref|XP_002126266.1| PREDICTED: similar to SON DNA-binding protein [Ciona intestinalis] Length = 140 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213 + + L E + P +++ SGPDH F V I+G +K+ A+ Sbjct: 64 KHPVSALMEICSKRKWSQPNFQLVHNSGPDHQRFFMFKVTINGQEYQPSTPSVNKKLAKA 123 Query: 214 VAAAEVLKREGIW 226 +A+ L+ G+ Sbjct: 124 NSASVALQGMGLI 136 >gi|190405368|gb|EDV08635.1| 60S ribosomal protein L15, mitochondrial precursor [Saccharomyces cerevisiae RM11-1a] Length = 234 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 14/135 (10%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 + G +N L+ + LTH S +H + E+L LG + L L + A+ E Sbjct: 58 KYGINLSN-ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 116 Query: 72 SVRFNSL-------------VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 + L F ++ ++ + T+I A V Sbjct: 117 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDSIKDGHINGETTIFASV 176 Query: 119 VESLIAALYLDGGIE 133 + + I A+ G E Sbjct: 177 LNAFIGAILSTNGSE 191 >gi|151940843|gb|EDN59225.1| YmL15 [Saccharomyces cerevisiae YJM789] Length = 234 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 14/135 (10%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 + G +N L+ + LTH S +H + E+L LG + L L + A+ E Sbjct: 58 KYGINLSN-ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 116 Query: 72 SVRFNSL-------------VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 + L F ++ ++ + T+I A V Sbjct: 117 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDPIKDGHINGETTIFASV 176 Query: 119 VESLIAALYLDGGIE 133 + + I A+ G E Sbjct: 177 LNAFIGAILSTNGSE 191 >gi|91084275|ref|XP_971282.1| PREDICTED: similar to double-stranded binding protein, putative [Tribolium castaneum] gi|270008749|gb|EFA05197.1| hypothetical protein TcasGA2_TC015332 [Tribolium castaneum] Length = 563 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 1/74 (1%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAPAQGMDCSKR 209 + K+ + + + ++ + V I+ + G SK+ Sbjct: 282 WIMNPNGKSYVCILHEYVQHALKKQPTYKFTELENAATPYAATVSINDMQYGVGYGTSKK 341 Query: 210 AAEQVAAAEVLKRE 223 A+ AA L+ Sbjct: 342 QAKSEAARATLEIL 355 >gi|297740849|emb|CBI31031.3| unnamed protein product [Vitis vinifera] Length = 931 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 18/37 (48%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F +++ + K+ AEQ AA + L++ G+ Sbjct: 56 FRCSLQLPEFSVVSEYFKRKKDAEQSAAEKALRKLGV 92 >gi|297736909|emb|CBI26110.3| unnamed protein product [Vitis vinifera] Length = 826 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAE---VLKRE 223 T RSGP H P F V+I+ G +K+ A++ AA LKR Sbjct: 106 YTTVRSGPGHIPVFFCTVDIA-KMSFTGEPAKTKKQAQKNAAMAAWSALKRL 156 Score = 46.1 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAAAEVAL 65 >gi|225444071|ref|XP_002264328.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 886 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 18/37 (48%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F +++ + K+ AEQ AA + L++ G+ Sbjct: 56 FRCSLQLPEFSVVSEYFKRKKDAEQSAAEKALRKLGV 92 >gi|225432380|ref|XP_002276654.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 563 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAE---VLKRE 223 T RSGP H P F V+I+ G +K+ A++ AA LKR Sbjct: 106 YTTVRSGPGHIPVFFCTVDIA-KMSFTGEPAKTKKQAQKNAAMAAWSALKRL 156 Score = 46.1 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAAAEVAL 65 >gi|194758212|ref|XP_001961356.1| GF13828 [Drosophila ananassae] gi|190622654|gb|EDV38178.1| GF13828 [Drosophila ananassae] Length = 1339 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYEYCSKSRIEPKLDVRQTGPKNRQRFLCEVRVDQNNYIGVGNSTNKKDAEKNACRD 63 >gi|126304888|ref|XP_001373897.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 495 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 55/181 (30%), Gaps = 4/181 (2%) Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 G + L ++ + + + E + A+ + Sbjct: 256 GLQPLEKIMQEYIKYAVRYDNHYTNTKYCLCQMLREQLETPQGKKLHAAQSAQEICEAFE 315 Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 + SF I A++ + A + E D + A+K K + + + Sbjct: 316 LGSFYEKITAEL--AAKGATLQNKAQEEDDQAGDTDVIRMAVKFDKRQYPPQITPKMCLL 373 Query: 167 AKFGVTPEYKVTFRS-GPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224 + + + D F VV +S D SK+ AEQ AA L+ G Sbjct: 374 EWCRKEKLAQPVYETIQRPVDRLFCSVVTVSERKYRSALWDKSKKLAEQAAAIVCLRSLG 433 Query: 225 I 225 + Sbjct: 434 L 434 >gi|228470482|ref|ZP_04055355.1| ribonuclease III [Porphyromonas uenonis 60-3] gi|228307829|gb|EEK16773.1| ribonuclease III [Porphyromonas uenonis 60-3] Length = 41 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 15/30 (50%) Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 I G +G SK+ A+Q AA + L+ Sbjct: 1 IDGKPVGRGAGSSKKRAQQEAARDTLELLK 30 >gi|195580870|ref|XP_002080257.1| GD10344 [Drosophila simulans] gi|194192266|gb|EDX05842.1| GD10344 [Drosophila simulans] Length = 1298 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157382894|gb|ABV48882.1| maleless [Drosophila simulans] Length = 1298 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157382892|gb|ABV48881.1| maleless [Drosophila simulans] Length = 1298 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157382890|gb|ABV48880.1| maleless [Drosophila simulans] Length = 1298 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157382888|gb|ABV48879.1| maleless [Drosophila simulans] Length = 1298 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157382886|gb|ABV48878.1| maleless [Drosophila simulans] Length = 1298 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157382884|gb|ABV48877.1| maleless [Drosophila simulans] Length = 1298 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|157382882|gb|ABV48876.1| maleless [Drosophila simulans] Length = 1298 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63 >gi|224047671|ref|XP_002191239.1| PREDICTED: eukaryotic translation initiation factor 2-alpha kinase 2 [Taeniopygia guttata] Length = 561 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 18/33 (54%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 Y+ +GP H P FTVVV+I+G G S Sbjct: 22 YETVDMTGPSHYPEFTVVVKINGQKYGTGTGKS 54 Score = 36.1 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 10/27 (37%), Positives = 14/27 (51%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G DH P +TV ISG +G + Sbjct: 123 TGGDHAPTYTVSCTISGYVYGRGAGPT 149 >gi|312080789|ref|XP_003142750.1| hypothetical protein LOAG_07168 [Loa loa] gi|307762087|gb|EFO21321.1| hypothetical protein LOAG_07168 [Loa loa] Length = 397 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 81/231 (35%), Gaps = 26/231 (11%) Query: 12 RIGYAFANRSLLEKALTHSSI-------------------SHSYQESYERLEFLGDRILG 52 RIG ++++L +ALT +S S+ +E E+L LG +L Sbjct: 69 RIGAPETDKNVLIQALTDNSFYQRADIAEESANAQPSKQESYEMKEHNEQLIQLGSELLW 128 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 L A E +S L+S E + +A L + + IR + Sbjct: 129 KSTCAYLRYGLPHAPEELISSLALKLISDEQIATLATYLGINNLIRTAEFP------PSN 182 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 + + ++LIA L I + + ++ + L+ + G+ Sbjct: 183 ASLCNAFKALIATLPYQRAIALIRNVIMAQLVDLDIEEVFPLAEPLAVLRFVIFSSTGME 242 Query: 173 PEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E ++ +G +P F + + QG + A +AA L R Sbjct: 243 VEPRLLRSAGEISAEPIFIAGIYANKRLIGQGPGETISIAVDMAAMNALMR 293 >gi|195027549|ref|XP_001986645.1| GH20409 [Drosophila grimshawi] gi|193902645|gb|EDW01512.1| GH20409 [Drosophila grimshawi] Length = 1335 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218 +++ T +GP H RF V + A G +K+ AE+ A+ + Sbjct: 5 SFLFSYCAKNQTEPKFEVRPTGPKHRQRFLCEVRVDLCSYVAVGNSTNKKDAEKNASRD 63 >gi|170031452|ref|XP_001843599.1| ribonuclease 3 [Culex quinquefasciatus] gi|167870165|gb|EDS33548.1| ribonuclease 3 [Culex quinquefasciatus] Length = 835 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 18/34 (52%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 LEK I Y F NR L+ ALTH S ++ + Sbjct: 710 LDALEKYIDYTFTNRYTLQLALTHPSYKENFGTN 743 >gi|38229197|ref|NP_938290.1| 34L [Yaba monkey tumor virus] gi|38000468|gb|AAR07391.1| 34L [Yaba monkey tumor virus] Length = 184 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 35/128 (27%), Gaps = 1/128 (0%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + + K V S + + + + K + Sbjct: 50 YKLQKEGVLKMVPSNPPKWFKNCNCEDSE-NNDNKLESRDHVPHHIFKDEIPYKKIISWK 108 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 D + + +G H P FT V ISG+ + +K+ A+ A Sbjct: 109 DKTPCTVINEYCQLTSRDWSIEVTTAGESHCPIFTASVIISGIKFKPEIGNTKKEAKHKA 168 Query: 216 AAEVLKRE 223 + ++ Sbjct: 169 SKITMEEI 176 >gi|208690881|gb|ACI31216.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Gorilla gorilla] Length = 551 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E + GP+ F ++ + G +K+ A+Q+AA + Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165 Score = 39.9 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 13/28 (46%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I +G S Sbjct: 32 NSGPPHDRRFTFRVIIDEREFPEGEGRS 59 >gi|219520292|gb|AAI43231.1| EIF2AK2 protein [Homo sapiens] Length = 546 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E + GP+ F ++ + G +K+ A+Q+AA + Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165 Score = 41.8 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 14/28 (50%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I G +G S Sbjct: 32 NSGPPHDRRFTFQVIIDGREFPEGEGRS 59 >gi|208431829|ref|NP_001129124.1| interferon-induced, double-stranded RNA-activated protein kinase isoform b [Homo sapiens] Length = 510 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E + GP+ F ++ + G +K+ A+Q+AA + Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165 Score = 41.8 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 14/28 (50%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I G +G S Sbjct: 32 NSGPPHDRRFTFQVIIDGREFPEGEGRS 59 >gi|31747519|gb|AAP57628.1| interferon-inducible double-stranded RNA-dependent protein kinase [Homo sapiens] Length = 510 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E + GP+ F ++ + G +K+ A+Q+AA + Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165 Score = 41.8 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 14/28 (50%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I G +G S Sbjct: 32 NSGPPHDRRFTFQVIIDGREFPEGEGRS 59 >gi|61364980|gb|AAX42635.1| protein kinase interferon-inducible double stranded RNA dependent [synthetic construct] Length = 552 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E + GP+ F ++ + G +K+ A+Q+AA + Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165 Score = 41.8 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 14/28 (50%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I G +G S Sbjct: 32 NSGPPHDRRFTFQVIIDGREFPEGEGRS 59 >gi|60824577|gb|AAX36685.1| protein kinase interferon-inducible double stranded RNA dependent [synthetic construct] Length = 552 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E + GP+ F ++ + G +K+ A+Q+AA + Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165 Score = 41.8 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 14/28 (50%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I G +G S Sbjct: 32 NSGPPHDRRFTFQVIIDGREFPEGEGRS 59 >gi|60812550|gb|AAX36216.1| protein kinase interferon-inducible double stranded RNA dependent [synthetic construct] Length = 551 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E + GP+ F ++ + G +K+ A+Q+AA + Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165 Score = 41.8 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 14/28 (50%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I G +G S Sbjct: 32 NSGPPHDRRFTFQVIIDGREFPEGEGRS 59 >gi|27371006|gb|AAH40851.1| EIF2AK2 protein [Homo sapiens] gi|34784744|gb|AAH57805.1| EIF2AK2 protein [Homo sapiens] Length = 513 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E + GP+ F ++ + G +K+ A+Q+AA + Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165 Score = 41.8 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 14/28 (50%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I G +G S Sbjct: 32 NSGPPHDRRFTFQVIIDGREFPEGEGRS 59 >gi|4506103|ref|NP_002750.1| interferon-induced, double-stranded RNA-activated protein kinase isoform a [Homo sapiens] gi|208431827|ref|NP_001129123.1| interferon-induced, double-stranded RNA-activated protein kinase isoform a [Homo sapiens] gi|125527|sp|P19525|E2AK2_HUMAN RecName: Full=Interferon-induced, double-stranded RNA-activated protein kinase; AltName: Full=Eukaryotic translation initiation factor 2-alpha kinase 2; Short=eIF-2A protein kinase 2; AltName: Full=Interferon-inducible RNA-dependent protein kinase; AltName: Full=P1/eIF-2A protein kinase; AltName: Full=Protein kinase RNA-activated; Short=PKR; AltName: Full=p68 kinase gi|189506|gb|AAA36409.1| p68 kinase [Homo sapiens] gi|189782|gb|AAA18253.1| P1/eIF-2a protein kinase [Homo sapiens] gi|1537049|gb|AAC50768.1| interferon-inducible RNA-dependent protein kinase [Homo sapiens] gi|28372413|gb|AAO38055.1| protein kinase, interferon-inducible double stranded RNA dependent [Homo sapiens] gi|61354795|gb|AAX41060.1| protein kinase interferon-inducible double stranded RNA dependent [synthetic construct] gi|62739920|gb|AAH93676.1| Eukaryotic translation initiation factor 2-alpha kinase 2 [Homo sapiens] gi|62988930|gb|AAY24317.1| unknown [Homo sapiens] gi|75517635|gb|AAI01476.1| Eukaryotic translation initiation factor 2-alpha kinase 2 [Homo sapiens] gi|119620811|gb|EAX00406.1| eukaryotic translation initiation factor 2-alpha kinase 2, isoform CRA_a [Homo sapiens] gi|119620812|gb|EAX00407.1| eukaryotic translation initiation factor 2-alpha kinase 2, isoform CRA_a [Homo sapiens] gi|119620813|gb|EAX00408.1| eukaryotic translation initiation factor 2-alpha kinase 2, isoform CRA_a [Homo sapiens] gi|119620814|gb|EAX00409.1| eukaryotic translation initiation factor 2-alpha kinase 2, isoform CRA_a [Homo sapiens] gi|158254742|dbj|BAF83344.1| unnamed protein product [Homo sapiens] gi|189054047|dbj|BAG36554.1| unnamed protein product [Homo sapiens] Length = 551 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E + GP+ F ++ + G +K+ A+Q+AA + Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165 Score = 41.8 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 14/28 (50%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I G +G S Sbjct: 32 NSGPPHDRRFTFQVIIDGREFPEGEGRS 59 >gi|255644888|gb|ACU22944.1| unknown [Glycine max] Length = 401 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 5/70 (7%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAA 216 L + + G TFRSG H P FT VE++G+ G +K+ AE+ AA Sbjct: 88 YKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFTGTVELAGI-MFTGEPAKNKKQAEKNAA 146 Query: 217 AEV---LKRE 223 LK+ Sbjct: 147 MAAWSSLKQL 156 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALNSL 68 >gi|297746261|emb|CBI16317.3| unnamed protein product [Vitis vinifera] Length = 280 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L + + G TFRSG H P FT VE++G+ +K+ AE+ AA Sbjct: 88 YKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGTVELAGITFTGEPAKNKKQAEKNAAM 147 Query: 218 EV---LKRE 223 LK+ Sbjct: 148 AAWSSLKQL 156 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSAAEVALNSL 68 >gi|225435325|ref|XP_002285171.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 413 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L + + G TFRSG H P FT VE++G+ +K+ AE+ AA Sbjct: 88 YKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGTVELAGITFTGEPAKNKKQAEKNAAM 147 Query: 218 EV---LKRE 223 LK+ Sbjct: 148 AAWSSLKQL 156 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSAAEVALNSL 68 >gi|147853140|emb|CAN80689.1| hypothetical protein VITISV_005501 [Vitis vinifera] Length = 403 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 L + + G TFRSG H P FT VE++G+ +K+ AE+ AA Sbjct: 88 YKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGTVELAGITFTGEPAKNKKQAEKNAAM 147 Query: 218 EV---LKRE 223 LK+ Sbjct: 148 AAWSSLKQL 156 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSAAEVALNSL 68 >gi|47220991|emb|CAF98220.1| unnamed protein product [Tetraodon nigroviridis] Length = 363 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 +T + +YK+ ++GP H P FT+ VE+ G + SKR A+ A Sbjct: 301 PQTMNALMRLNQLKPGLQYKLVSQTGPVHVPVFTMSVEVDGTVF-EASGPSKRTAKLHVA 359 >gi|327283189|ref|XP_003226324.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 1 [Anolis carolinensis] Length = 773 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 542 FGASVIIDGVTYGAGTASSKKLAKNKAARATLEIL 576 >gi|326929530|ref|XP_003210916.1| PREDICTED: microprocessor complex subunit DGCR8-like [Meleagris gallopavo] Length = 709 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 478 FGASVIIDGVTYGAGTASSKKLAKNKAARATLEIL 512 >gi|50756249|ref|XP_415079.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8 [Gallus gallus] Length = 775 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V I G+ G SK+ A+ AA L+ Sbjct: 544 FGASVIIDGVTYGAGTASSKKLAKNKAARATLEIL 578 >gi|91084595|ref|XP_974201.1| PREDICTED: similar to 39S ribosomal protein L44 [Tribolium castaneum] gi|270008900|gb|EFA05348.1| hypothetical protein TcasGA2_TC015512 [Tribolium castaneum] Length = 294 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 59/226 (26%), Gaps = 21/226 (9%) Query: 11 KRIGYAFANRSLLEKALTHSSIS-HSYQESYER-LEF-----------LGDRILGLLIST 57 KR+ F +R +L++ALTH S ++ E+ LEF G ++ + Sbjct: 73 KRLREEF-DRKVLKQALTHRSYVTREEDKAKEKGLEFETIECNHQLIKQGGALISQCVRN 131 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L + + L + + + V L L ++ + ++ T Sbjct: 132 EL---GGKYPKDVVEALHGHLTTVDMLAHVGLHLGLKDIVQTAEFPVENETLADTFKAVV 188 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177 + K Sbjct: 189 AALEVSQGQERVQLFVKDFLLSQLNGKDVYDVWAPDSPLDYLRSLLPKQEIESRLCNKSA 248 Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + + G S A+ AA + ++R Sbjct: 249 VNTILAN----YQVGLYCNKKLLGLGWGESVEIAKDTAALDAIQRL 290 >gi|116283356|gb|AAH22314.1| EIF2AK2 protein [Homo sapiens] Length = 363 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E + GP+ F ++ + G +K+ A+Q+AA + Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165 Score = 41.8 bits (96), Expect = 0.064, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 14/28 (50%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I G +G S Sbjct: 32 NSGPPHDRRFTFQVIIDGREFPEGEGRS 59 >gi|159162913|pdb|1QU6|A Chain A, Structure Of The Double-Stranded Rna-Binding Domain Of The Protein Kinase Pkr Reveals The Molecular Basis Of Its Dsrna-Mediated Activation Length = 179 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E + GP+ F ++ + G +K+ A+Q+AA + Sbjct: 121 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 170 Score = 41.8 bits (96), Expect = 0.064, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 14/28 (50%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I G +G S Sbjct: 37 NSGPPHDRRFTFQVIIDGREFPEGEGRS 64 >gi|255713568|ref|XP_002553066.1| KLTH0D08140p [Lachancea thermotolerans] gi|238934446|emb|CAR22628.1| KLTH0D08140p [Lachancea thermotolerans] Length = 374 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 27/102 (26%), Gaps = 1/102 (0%) Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 D ++ + EL + P K+ S Sbjct: 252 WAYTHETDPTFAFRFIDDHILSRKLDVTRIFQFEQPARELAVLCRRENLSPPVSKLLAES 311 Query: 182 GP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 G P F V V +G S + A+ AA + L + Sbjct: 312 GRLSKAPVFIVGVFSGAEKLGEGFGSSLKEAKARAATDALMK 353 >gi|224122146|ref|XP_002330552.1| hypothetical protein POPTRDRAFT_270173 [Populus trichocarpa] gi|222872110|gb|EEF09241.1| hypothetical protein POPTRDRAFT_270173 [Populus trichocarpa] Length = 916 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 18/42 (42%) Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 P P F +E+ + K+ AEQ AA LKR G Sbjct: 36 PQKAPLFRCQLELPEFTVVSDICRKKKDAEQSAADLALKRLG 77 >gi|3650397|emb|CAA77038.1| maleless protein [Sciara ocellaris] Length = 1252 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 158 KTELQEWAHAKFGVTPEYKVTF--RSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213 ++++ + H+ T +GP H RF + ++G G S K+ AE+ Sbjct: 1 MSDIKSFFHSWCNKTKVEPQFESRPTGPKHRQRFLCELRVAGFNY-VGAGNSTVKKDAEK 59 Query: 214 VAAAE 218 AA + Sbjct: 60 NAARD 64 >gi|50511729|gb|AAT77417.1| dsRNA-binding protein LH2 [Brassica oleracea var. capitata] Length = 278 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221 + K+ + T + GP H F V + G+ +++AAEQ AA L+ Sbjct: 21 QEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQSAAEVALQ 80 Query: 222 RE 223 Sbjct: 81 EL 82 Score = 44.1 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 25/72 (34%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K LQE+A P Y+ P+FT VEI G+ +KR A Sbjct: 97 HEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKREA 156 Query: 212 EQVAAAEVLKRE 223 E A L Sbjct: 157 EISAGRTALIAI 168 >gi|50511733|gb|AAT77419.1| dsRNA-binding protein LH2-o [Brassica napus] Length = 277 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221 + K+ + T + GP H F V + G+ +++AAEQ AA L+ Sbjct: 21 QEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQSAAEVALQ 80 Query: 222 RE 223 Sbjct: 81 EL 82 Score = 44.1 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 25/72 (34%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K LQE+A P Y+ P+FT VEI G+ +KR A Sbjct: 97 HEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKREA 156 Query: 212 EQVAAAEVLKRE 223 E A L Sbjct: 157 EISAGRTALIAI 168 >gi|9967526|emb|CAC05659.1| RBP2 protein [Brassica oleracea var. capitata] Length = 283 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221 + K+ + T + GP H F V + G+ +++AAEQ AA L+ Sbjct: 21 QEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQSAAEVALQ 80 Query: 222 RE 223 Sbjct: 81 EL 82 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 25/72 (34%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K LQE+A P Y+ P+FT VEI G+ +K+ A Sbjct: 97 HEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKKEA 156 Query: 212 EQVAAAEVLKRE 223 E A L Sbjct: 157 EISAGRTALIAI 168 >gi|195444872|ref|XP_002070068.1| GK11851 [Drosophila willistoni] gi|194166153|gb|EDW81054.1| GK11851 [Drosophila willistoni] Length = 321 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 78/234 (33%), Gaps = 19/234 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRI 50 KR+ F +L++A T S +H +E L G + Sbjct: 67 LFAFGKRLSENFE-LPVLQQAFTDPSYAHKEEERQRKFGIEEEDLKIAHNAHLAEKGGHL 125 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + L + L N L+S ET + V+R L + S Sbjct: 126 ATAYVEAYLKQSLPKVPKEGLEALANYLLSTETLANVSRHLGSIE--LIYSSEYPPSDKI 183 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 + + V+ +L + ++ F+ Q+ L + L+E + Sbjct: 184 LANSLKAVIGALSDSSGVERAFTFVRDFICTQLNQKDLLEIWTPVEPFKLLKEACQQRQW 243 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++ G + + V + + +G + + A+++AA + L++ Sbjct: 244 SEPEPRLQGDCGKNTVLAAYQVGIYSNRQMLGKGFGETVQTAKEMAAIDALQKL 297 >gi|41058336|gb|AAR99160.1| dsRNA-binding protein [Solanum lycopersicum] Length = 318 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 15/32 (46%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 FT V++ G+ +K+ AE AA L Sbjct: 18 FTCTVDVGGMKYIGAAARTKKEAEIKAARTAL 49 >gi|302826423|ref|XP_002994689.1| hypothetical protein SELMODRAFT_432592 [Selaginella moellendorffii] gi|300137140|gb|EFJ04244.1| hypothetical protein SELMODRAFT_432592 [Selaginella moellendorffii] Length = 243 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-----Q 202 +++ K + L + + P+Y++ SGP H RFT V ++ + Sbjct: 150 MENDKANAFTRQTLNDICLQRQWPMPQYRLLSESGPAHAKRFTYTVRVNTRERGWTDECE 209 Query: 203 GMD-CSKRAAEQVAAAEVLKREGIW 226 G S + A+ AA +L+ W Sbjct: 210 GQAMPSMKKAKDSAALVLLEVLKQW 234 >gi|328722856|ref|XP_001948677.2| PREDICTED: microprocessor complex subunit DGCR8-like [Acyrthosiphon pisum] Length = 472 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 1/92 (1%) Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191 E + + + + T P + Sbjct: 205 QEPDVKSDCNTSNPEDQWTINLNGKSYVSILHEYIQRVLKTQPSYEFKELENARYP-YLA 263 Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + G+ G+ SK+ A+ AA L+ Sbjct: 264 TVILDGMQYGIGIGSSKKQAKLDAARATLEIL 295 >gi|147794041|emb|CAN60109.1| hypothetical protein VITISV_044329 [Vitis vinifera] Length = 858 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 14/32 (43%) Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V +G GM +++ A+Q AA L Sbjct: 673 QVLFTGEKIGVGMGKTRKDAQQQAAENALHSL 704 >gi|328352939|emb|CCA39337.1| Ribonuclease 3 [Pichia pastoris CBS 7435] Length = 196 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 Y+ + LL + LTH S +H + E+L +G ++L L S + + + Sbjct: 46 KYSIPDNELLLQILTHKSFAHGLKPYNEKLSVIGFQLLKLQSSVHVISKPSDSP 99 >gi|254571879|ref|XP_002493049.1| Mitochondrial ribosomal protein of the large subunit [Pichia pastoris GS115] gi|238032847|emb|CAY70870.1| Mitochondrial ribosomal protein of the large subunit [Pichia pastoris GS115] Length = 208 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67 Y+ + LL + LTH S +H + E+L +G ++L L S + + + Sbjct: 58 KYSIPDNELLLQILTHKSFAHGLKPYNEKLSVIGFQLLKLQSSVHVISKPSDSP 111 >gi|225470352|ref|XP_002267987.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 935 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 17/33 (51%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 +F++ V +G +G ++R A+ AA L Sbjct: 720 QFSIEVWFAGEKIGEGTGKTRREAQCQAAEASL 752 Score = 39.5 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 13/30 (43%) Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 VEI G +G + A+ AA + L Sbjct: 853 AQVEIDGQVLGKGTGSTWDDAKMQAAEKAL 882 >gi|109287979|ref|YP_654673.1| hypothetical protein MIV101R [Invertebrate iridescent virus 3] gi|123868010|sp|Q196V9|RNC_IIV3 RecName: Full=Putative ribonuclease 3 gi|106073602|gb|ABF82131.1| hypothetical protein MIV101R [Aedes taeniorhynchus iridescent virus] Length = 333 Score = 47.2 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 70/221 (31%), Gaps = 27/221 (12%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD-----SAKEGELSVRFN 76 A T SS + +YE E +GD +G I + F ++ Sbjct: 99 YFNMAFTSSSANELN--NYELFEQMGDSTIGKFIVWSSYEKFPQLRGKPEAVEIVARMKI 156 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +L S + SQ+A +L + +FI + + R + DV E+LI Sbjct: 157 NLGSKDNLSQIAEDLGMWTFISATEEARH---RLKKKLLEDVFEALIGVTEYIIYEFTDT 213 Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD------------ 184 + + + S + L+ + K F D Sbjct: 214 NYSQPGLAYQLVYSLLLKLFDPYILKIDYNTLVDSKNRLKGVFDQYKDKLGLQPVYQSER 273 Query: 185 ---HDP-RFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220 +D F V +G +G K+ AE+ A+ + Sbjct: 274 IVKNDKNVFLSKVYDGNGNFLGEGTAPLKKEAEKKASEVAI 314 >gi|56418259|gb|AAV91073.1| RNase III [Grouper iridovirus] Length = 375 Score = 47.2 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 55/214 (25%), Gaps = 18/214 (8%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 R L K T S+ +YE LE +GD + G N F E Sbjct: 23 RRRDLWAKVFTPKSV--DPVNNYEALEIVGDGLAGCFFPIYFINRFPQLNSAEGVKLVAR 80 Query: 78 LVSAETCSQVAREL-DLASFIRVSSDLRKDVCSFMTSIQ--ADVVESLIAALYLDGGIEV 134 L + + F + V + + DV E+ + A+ Sbjct: 81 LKINYASRKSFAAIAGSLGFWQHVKKPTDTVITPTSKEILLEDVFEAFLGAISTAVDHHF 140 Query: 135 AGTF--------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 K + S + + + + + + G + Sbjct: 141 GIPALGVAVVYDFLKAVFDKIDISLNYVDLFDAKTRLKELIDVKKSELGDLRYVHGNNIT 200 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F + K+ E+ AAA L Sbjct: 201 QIF-----LGERLVGSATGPIKKDREKDAAARAL 229 >gi|208690907|gb|ACI31229.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Symphalangus syndactylus] Length = 551 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 15/43 (34%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G F ++ + +K+ A+Q+AA + Sbjct: 123 WGVHGPKGFHYKCKMGQKEYSIATGSTKQEAKQLAAKLAYVQI 165 Score = 38.4 bits (87), Expect = 0.85, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 12/28 (42%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I + S Sbjct: 32 NSGPPHDRRFTFRVIIDEREFPEAEGRS 59 >gi|297798116|ref|XP_002866942.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata] gi|297312778|gb|EFH43201.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata] Length = 537 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 57/185 (30%), Gaps = 12/185 (6%) Query: 21 SLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 +LL A H S + + RL FLG +L L ++ + G + R Sbjct: 169 TLLYLAFQHPSCDRARARHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVF 228 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +L+ + + L + I D+ K + V +L A+YL G+ Sbjct: 229 ALIGKRYLPKWIKAASLQNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCYGMPEVY 288 Query: 137 T--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDPR 188 F A + R ++ + G ++ P H Sbjct: 289 RVLFEVFGMDPDADECQPRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRL 348 Query: 189 FTVVV 193 F V Sbjct: 349 FRACV 353 Score = 36.1 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 10/108 (9%) Query: 2 SALRYSTLEKRIGYAFANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLIS 56 R + + N L L+ H S + +ERLE++G +I + ++ Sbjct: 383 MNDRIKEITEA-----RNIELGLGLQLCFLHPSKHKFEHPRFCFERLEYVGQKIQDIAMA 437 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 L A L + L+ + C + RE L +FI S ++ Sbjct: 438 ERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKRLHNFITYSEEVH 485 >gi|255583419|ref|XP_002532469.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223527827|gb|EEF29925.1| double-stranded RNA binding protein, putative [Ricinus communis] Length = 289 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 5/54 (9%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQVAAAEVL----KREG 224 T G HDP+F V + G S ++ AEQ A L ++ Sbjct: 32 YQTVNEGYPHDPKFRSTVLVDGEEYTSHNTFSHRKEAEQDVAKLALTSITEKIK 85 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 15/33 (45%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 P F +G+ + +K+ AEQ+AA Sbjct: 129 PIFVSSSVFNGVTYNGDIGRTKKEAEQLAARAA 161 >gi|56692721|ref|YP_164179.1| RNase III [Singapore grouper iridovirus] gi|42517433|gb|AAS18099.1| RNase III [Singapore grouper iridovirus] Length = 375 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 56/214 (26%), Gaps = 18/214 (8%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 R L K T S+ +YE LE +GD + G N F E Sbjct: 23 RRRDLWAKVFTPKSV--DPVNNYEALEIVGDGLAGCFFPIYFINRFPQLNSAEGVKLVAR 80 Query: 78 LVSAETCSQVAREL-DLASFIRVSSDLRKDVCSFMTSIQ--ADVVESLIAALYLDGGIEV 134 L + + F + V + + DV E+ + A+ + Sbjct: 81 LKINYASRKSFAAIAGSLGFWQHVKKPTDTVITPTSKEILLEDVFEAFLGAISIAVDHHF 140 Query: 135 AGTF--------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 K + S + + + + + + G + Sbjct: 141 GIPALGVAVVYDFLKAVFDKIDISLNYVDLFDAKTRLKELIDVKKSELGDLRYVHGNNIT 200 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F + K+ E+ AAA L Sbjct: 201 QIF-----LGERLVGSATGPIKKDREKDAAARAL 229 >gi|297805542|ref|XP_002870655.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata] gi|297316491|gb|EFH46914.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata] Length = 394 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 SG H P F+ VE++G++ +K+ AE+ AA LKR Sbjct: 111 SGSCHFPGFSCTVELAGMSFTGESAKTKKQAEKNAAIAAWSSLKRM 156 Score = 42.2 bits (97), Expect = 0.047, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAAAEVSL 65 >gi|195119908|ref|XP_002004471.1| GI19596 [Drosophila mojavensis] gi|193909539|gb|EDW08406.1| GI19596 [Drosophila mojavensis] Length = 1351 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 +++ T GP H RF V + A G +K+ AE+ A+ + Sbjct: 5 SFLFSYCAKNQTEPKFEVRPIGPKHRQRFLCEVRVDQCPYVAVGNSTNKKDAEKNASRD 63 >gi|15078855|ref|NP_149605.1| 142R [Invertebrate iridescent virus 6] gi|82013395|sp|O55748|RNC_IIV6 RecName: Full=Putative ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gi|2738432|gb|AAB94459.1| 142R [Invertebrate iridescent virus 6] Length = 292 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 58/226 (25%), Gaps = 27/226 (11%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVRFNSL 78 A T S + +YE E LGD + I ++ F + ++ Sbjct: 51 YNTAFT--SRGADDKNNYEMFEQLGDVSVNKFIVNYMYKRFPQLRNPNGVDVVAKLKIKY 108 Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 S ++ LD+ FI + D R + + + L ++A Sbjct: 109 ASKNQLQMLSESLDMWRFITATYDERTNKKKPLLEDTFESFFGATEWLIDSFIEDIALKQ 168 Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG- 197 + + + K+ + K F V+ Sbjct: 169 GNNNTYVGVGYNIINGILTTLFDRINISLKYENLVDAKTRFNEVIAEQKSIIGDVKYEDE 228 Query: 198 --------------------LAPAQGMDCSKRAAEQVAAAEVLKRE 223 G KR A++ AA+ L+ Sbjct: 229 YKNGKHTSKIYRYPPNSNLKELLGIGTGTLKRDAQEQAASRALETL 274 >gi|15235580|ref|NP_195467.1| ribonuclease III family protein [Arabidopsis thaliana] gi|4468817|emb|CAB38218.1| putative protein [Arabidopsis thaliana] gi|7270733|emb|CAB80416.1| putative protein [Arabidopsis thaliana] gi|95147308|gb|ABF57289.1| At4g37510 [Arabidopsis thaliana] gi|332661403|gb|AEE86803.1| Ribonuclease III family protein [Arabidopsis thaliana] Length = 537 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 57/185 (30%), Gaps = 12/185 (6%) Query: 21 SLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 +LL A H S + + RL FLG +L L ++ + G + R Sbjct: 169 TLLYLAFQHPSCDRARARHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVF 228 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 +L+ + + L + I D+ K + V +L A+YL G+ Sbjct: 229 ALIGKRYLPKWIKAASLQNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVY 288 Query: 137 T--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDPR 188 F A + R ++ + G ++ P H Sbjct: 289 RVLFEVFGMDPDADECQPRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRL 348 Query: 189 FTVVV 193 F V Sbjct: 349 FRACV 353 Score = 36.1 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 10/108 (9%) Query: 2 SALRYSTLEKRIGYAFANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLIS 56 R + + N L L+ H S + +ERLE++G +I + ++ Sbjct: 383 MNDRIKEITEA-----RNIELGLGLQLCFLHPSKHKFEHPRFCFERLEYVGQKIQDIAMA 437 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 L A L + L+ + C + RE L +FI S ++ Sbjct: 438 ERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKRLHNFIIYSEEVH 485 >gi|149457864|ref|XP_001511059.1| PREDICTED: similar to Mitochondrial ribosomal protein L44, partial [Ornithorhynchus anatinus] Length = 275 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 74/240 (30%), Gaps = 29/240 (12%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFLGD 48 +R+ F+ LL+ A + S + + + L G Sbjct: 12 IQAFSRRLHENFS-LELLKTAFVNRCYIQSEEARRQELGVEEQAAALKLKDNQELSEQGA 70 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ L + F + ++ L E VAR L + + Sbjct: 71 AFSHTYLTQLFEDTFPNMPPEGVAALVGFLTGPEVVCHVARNLAVEELTLSADFP----- 125 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL----KSGKFRRDAKTELQEW 164 ++ +++ AL G + F+ + + + L++ Sbjct: 126 -VPQTVLRQTFFAVLGALLKSDGPQRTAVFIRDFLIPQMTGKELFEMWKVVNPMGLLEDE 184 Query: 165 AHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 185 MTKRNVPIPEPRLTRQSGSSTVLPVYFVGLYCDQKLIAEGPGETVLVAEEEAARVALRKL 244 >gi|187447250|emb|CAO84939.1| ENSANGG00000009686 protein [Anopheles gambiae] Length = 197 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 15/32 (46%) Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V I+ L G SK+ A+ AA E L+ Sbjct: 1 TVTINELKYGTGYGTSKKQAKSEAARETLEIL 32 >gi|187447226|emb|CAO84927.1| ENSANGG00000009686 protein [Anopheles arabiensis] gi|187447228|emb|CAO84928.1| ENSANGG00000009686 protein [Anopheles arabiensis] gi|187447230|emb|CAO84929.1| ENSANGG00000009686 protein [Anopheles arabiensis] gi|187447232|emb|CAO84930.1| ENSANGG00000009686 protein [Anopheles arabiensis] gi|187447234|emb|CAO84931.1| ENSANGG00000009686 protein [Anopheles arabiensis] gi|187447236|emb|CAO84932.1| ENSANGG00000009686 protein [Anopheles arabiensis] gi|187447238|emb|CAO84933.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447244|emb|CAO84936.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447246|emb|CAO84937.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447248|emb|CAO84938.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447252|emb|CAO84940.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447254|emb|CAO84941.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447256|emb|CAO84942.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447258|emb|CAO84943.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447262|emb|CAO84945.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447266|emb|CAO84947.1| ENSANGG00000009686 protein [Anopheles gambiae] Length = 197 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 15/32 (46%) Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V I+ L G SK+ A+ AA E L+ Sbjct: 1 TVTINELKYGTGYGTSKKQAKSEAARETLEIL 32 >gi|187447260|emb|CAO84944.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447264|emb|CAO84946.1| ENSANGG00000009686 protein [Anopheles gambiae] gi|187447268|emb|CAO84948.1| ENSANGG00000009686 protein [Anopheles gambiae] Length = 197 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 15/32 (46%) Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V I+ L G SK+ A+ AA E L+ Sbjct: 1 TVTINELKYGTGYGTSKKQAKSEAARETLEIL 32 >gi|187447242|emb|CAO84935.1| ENSANGG00000009686 protein [Anopheles gambiae] Length = 197 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 15/32 (46%) Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V I+ L G SK+ A+ AA E L+ Sbjct: 1 TVTINELKYGTGYGTSKKQAKSEAARETLEIL 32 >gi|312380139|gb|EFR26223.1| hypothetical protein AND_07871 [Anopheles darlingi] Length = 328 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 75/236 (31%), Gaps = 28/236 (11%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55 KR+ F S+L++A TH S ++ L GD ++ + Sbjct: 68 KRLQENFE-PSVLQQAFTHQSFIEQEKQKQAAVGIDEPVLGVHDNRELIAQGDSLIQQYV 126 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 L + + +L S + ++ L I + D + + S Sbjct: 127 EAFLLKALPRLPQQFVGSIQKALTSEAQLAHISAHLGTKDIILAADFPIDD--TLLASTL 184 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175 +V +L + + F+ QR DA L+E+ + PE Sbjct: 185 KAIVAALQRSSGDERCFLFVRDFLCTTLNQRDPFEYLHITDALGTLREYCQERKLAEPEP 244 Query: 176 KVTFRSGPD-----HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE-GI 225 ++ G + H V + G + A Q AA + L++ GI Sbjct: 245 RLIGTVGKNTLLAAHA----VGIYCDQKLLGTGYGEDQTIASQEAARDCLRKLFGI 296 >gi|189236875|ref|XP_974662.2| PREDICTED: similar to adenosine deaminase [Tribolium castaneum] Length = 622 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + +Y + ++GPDH P F + +++ G+ SK A +VL+ Sbjct: 178 YQNCLEYVDSMLKYTLVEKTGPDHKPTFKMAAKVNEKTYF-GLGGSKAKARMNVVEQVLE 236 Query: 222 REG 224 Sbjct: 237 NLK 239 >gi|33871554|gb|AAH07769.1| EIF2AK2 protein [Homo sapiens] Length = 384 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E + GP+ F ++ + G +K+ A+Q+AA + Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165 Score = 41.8 bits (96), Expect = 0.080, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 14/28 (50%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I G +G S Sbjct: 32 NSGPPHDRRFTFQVIIDGREFPEGEGRS 59 >gi|170585520|ref|XP_001897531.1| WW domain containing protein [Brugia malayi] gi|158595078|gb|EDP33653.1| WW domain containing protein [Brugia malayi] Length = 936 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 36/133 (27%), Gaps = 8/133 (6%) Query: 91 LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 L+ + S+ + V+ ++ + E + + R + Sbjct: 577 LEANLKPQHRGFFLNPQGKTSVSVLHEYVQKVLKSTINYHFSETRNSSMPYGCTARLKMN 636 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 R T ++E + G D F V G SK+ Sbjct: 637 LNNRVLCATSVKEKLMLLQEKQRREQRLQEHGEQPDADFVV--------LGTGCGNSKKT 688 Query: 211 AEQVAAAEVLKRE 223 A+ AA LK Sbjct: 689 AKLDAARNALKVL 701 >gi|224125268|ref|XP_002329763.1| predicted protein [Populus trichocarpa] gi|222870825|gb|EEF07956.1| predicted protein [Populus trichocarpa] Length = 224 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE-GI 225 +F++ +G +G ++R A++ AA +K+ GI Sbjct: 20 QFSIEAWFAGEKVGEGTGKTRREAQRQAAEGSIKKLAGI 58 Score = 40.7 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 14/31 (45%) Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 VEI G +G+ + A+ AA + L Sbjct: 140 HAQVEIDGQVLGKGIGSTWDEAKMQAAEKAL 170 >gi|156357520|ref|XP_001624265.1| predicted protein [Nematostella vectensis] gi|156211031|gb|EDO32165.1| predicted protein [Nematostella vectensis] Length = 118 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213 + + LQE K P++++ F GP H +F V ++G Q + +K+ A+ Sbjct: 40 KHPISMLQEICARKKWQLPDFQLIFDHGPPHSKQFLFKVAVNGYEYQPQVVSSNKKQAKA 99 Query: 214 VAAAEVLKREG 224 A LK G Sbjct: 100 QCALYALKAIG 110 >gi|195353782|ref|XP_002043382.1| GM16493 [Drosophila sechellia] gi|194127505|gb|EDW49548.1| GM16493 [Drosophila sechellia] Length = 1298 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAE 218 + ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVQPNTYIGVGNSTNKKDAEKNACRD 63 >gi|282856560|ref|ZP_06265833.1| double-stranded RNA-binding domain protein [Pyramidobacter piscolens W5455] gi|282585603|gb|EFB90898.1| double-stranded RNA-binding domain protein [Pyramidobacter piscolens W5455] Length = 365 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 22/38 (57%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +P F V +++SG G SKRAA Q AA ++L+ Sbjct: 122 NPLFFVELQLSGEPIVNGSGQSKRAAGQAAAWKMLQLL 159 Score = 41.8 bits (96), Expect = 0.072, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 8/52 (15%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA------E--QVAAAE 218 Y++ + GP+H P FT +G A+ SK+ A E + AA + Sbjct: 21 YRIVAKEGPEHKPVFTAAAFRNGARVAEAGGPSKKDALKALVREVGKAAARQ 72 >gi|270006306|gb|EFA02754.1| hypothetical protein TcasGA2_TC008487 [Tribolium castaneum] Length = 742 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + +Y + ++GPDH P F + +++ G+ SK A +VL+ Sbjct: 178 YQNCLEYVDSMLKYTLVEKTGPDHKPTFKMAAKVNEKTYF-GLGGSKAKARMNVVEQVLE 236 Query: 222 REG 224 Sbjct: 237 NLK 239 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F V + I G + G+ SK++A++VAA L Sbjct: 356 EFKVTITI-GKSLFVGIGPSKKSAKKVAALSAL 387 >gi|147815305|emb|CAN72245.1| hypothetical protein VITISV_028705 [Vitis vinifera] Length = 518 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 44/139 (31%), Gaps = 4/139 (2%) Query: 21 SLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 +LL A H S + + RL FLG +L L + + + R Sbjct: 171 ALLYLAFQHPSCDRANARHVRSGHSRLWFLGQYVLELAFAEYFLQRYPRESPAPMRERVF 230 Query: 77 SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136 L+ Q + L + + D+ + + V +L A+YL G+ Sbjct: 231 ELIGKRNLPQWIKAASLQNLVFPFDDMDRLIRKEREPPVKSVFWALFGAIYLCYGMPEVY 290 Query: 137 TFVDKYWKQRALKSGKFRR 155 + + + + Sbjct: 291 RVLFEVFGMDPEHEDCQPK 309 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 5/87 (5%) Query: 18 ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + YERLE++G +I ++++ L A L Sbjct: 388 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQ 447 Query: 73 VRFNSLVSAETCSQVARELDLASFIRV 99 + L+ + C + R+ L FI Sbjct: 448 EKHRRLLMNKFCGRYLRDKYLHRFIIY 474 >gi|255722171|ref|XP_002546020.1| predicted protein [Candida tropicalis MYA-3404] gi|240136509|gb|EER36062.1| predicted protein [Candida tropicalis MYA-3404] Length = 709 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 13/34 (38%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F V+I + G +K+ A AA L Sbjct: 659 KLFYATVQIGDVYLGAGYGSTKKEARHKAAMCAL 692 >gi|47225094|emb|CAF98721.1| unnamed protein product [Tetraodon nigroviridis] Length = 1041 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 48/109 (44%) Query: 38 ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97 ERLEFLGD ++ L S L+ F S +EG L+ ++V + + +A++L+L F+ Sbjct: 920 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 979 Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146 + S + A+ E+LI + + ++ Sbjct: 980 LYAHGPDLCRESDLRHAMANCFEALIGETLMRQEQTLCCFYLTGIHFIH 1028 Score = 37.6 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 19/31 (61%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L++ IGY F R LL+ A+TH S ++ + Sbjct: 836 LDQLIGYVFTERCLLQLAMTHPSHHLNFGMN 866 >gi|158296133|ref|XP_316626.4| AGAP006599-PA [Anopheles gambiae str. PEST] gi|157016367|gb|EAA11305.4| AGAP006599-PA [Anopheles gambiae str. PEST] Length = 1309 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 4/62 (6%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV---LKR 222 + V GP H RF V I G+ G +K+ +E+ A+ + L R Sbjct: 11 CQKNVCEPAFDVRPLGPKHRQRFLCEVRIPGINYIGVGNSTNKKDSEKNASRDFVNYLVR 70 Query: 223 EG 224 G Sbjct: 71 IG 72 >gi|224064274|ref|XP_002192167.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) [Taeniopygia guttata] Length = 490 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 21/172 (12%), Positives = 39/172 (22%), Gaps = 1/172 (0%) Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 + + + ++ + + L + Sbjct: 262 VMQDYIKYAVRYDNHYTNTKYCLCQMLREQLETTQGKKLQAAQSTQEICEAFEMGDFYEE 321 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 + E+ +L E K + T Sbjct: 322 TTAIFEAKKTSLETKMQDEDDQMEDPDVIKMAVRFDKREYPPQITPKMYLLEWCRKEKHP 381 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225 V D F VV ++ + D SK+ AEQ AA L+ G+ Sbjct: 382 QPVYETVQRPLDRLFCSVVTVAEQKYRSTLWDKSKKLAEQAAAIVCLRTLGV 433 >gi|320581623|gb|EFW95843.1| Mitochondrial ribosomal protein of the large subunit [Pichia angusta DL-1] Length = 355 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 29/251 (11%), Positives = 65/251 (25%), Gaps = 38/251 (15%) Query: 8 TLEKRIGYAFA-NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 L R+ + +S L +ALT ++ Y ++++ + G +L + L + Sbjct: 76 ALHARLNLSPNFKKSTLVRALTSRMKNNDYVDNHQ-MALFGSSMLSYYTTEYLITTYPRL 134 Query: 67 KEGELSVRFNSLVSAETCS------------------------QVARELDLASFIRVSSD 102 G L ++ V + R + + Sbjct: 135 PIGILKAATDAFVGDYPLHDVAKNVWGIEEDLSTNLEKYLSKEPKLFRFGRLRYDRQAQE 194 Query: 103 LRKDVCSFMTSIQADVVESLIA-----------ALYLDGGIEVAGTFVDKYWKQRALKSG 151 + + + + + + + D + + + S Sbjct: 195 VEAGITKYSITSETSLSTATAYANSVRAIVAGVFAADDERETKDFIYRHILSRNVDISSM 254 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + L K P ++ +G P F V +G S + Sbjct: 255 FEFEEPGKLLARLLKTKNMELPTIRLISETGRQSSSPTFIVGCFSGDNLLGEGQGTSLKE 314 Query: 211 AEQVAAAEVLK 221 A + LK Sbjct: 315 ARIRSCVSALK 325 >gi|148907218|gb|ABR16750.1| unknown [Picea sitchensis] Length = 388 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQV---AAAEVLKR 222 T RSGP H P F +V++ G G +K+ AEQ AA LK+ Sbjct: 106 YTTTRSGPAHLPVFKCIVDVFGTRF-NGKPAATKKQAEQNTAMAAWSALKQ 155 Score = 39.9 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 4/48 (8%) Query: 181 SGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEV---LKREG 224 GPDH PRF V +G + R AE VAA L + G Sbjct: 25 KGPDHAPRFRATVNFNGEIFESPNYCSTLRQAELVAAEVAVNTLSKRG 72 >gi|307776250|pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For The First Dsrbd Of Protein Hyl1 Length = 103 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221 + K+ + + GP H F V + G+ +++AAEQ AA L+ Sbjct: 24 QEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALR 83 Query: 222 RE 223 Sbjct: 84 EL 85 >gi|296863410|pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular Implications Processing gi|296863411|pdb|3ADI|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular Implications Processing gi|296863412|pdb|3ADI|B Chain B, Structure Of Arabidopsis Hyl1 And Its Molecular Implications Processing gi|296863413|pdb|3ADI|C Chain C, Structure Of Arabidopsis Hyl1 And Its Molecular Implications Processing Length = 73 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221 + K+ + + GP H F V + G+ +++AAEQ AA L+ Sbjct: 10 QEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALR 69 Query: 222 RE 223 Sbjct: 70 EL 71 >gi|18391056|ref|NP_563850.1| HYL1 (HYPONASTIC LEAVES 1); double-stranded RNA binding / miRNA binding / protein binding [Arabidopsis thaliana] gi|75218980|sp|O04492|DRB1_ARATH RecName: Full=Double-stranded RNA-binding protein 1; AltName: Full=Protein HYPONASTIC LEAVES 1; AltName: Full=dsRNA-binding protein 1; Short=AtDRB1 gi|12247457|gb|AAG49890.1|AF276440_1 hyponastic leave 1 [Arabidopsis thaliana] gi|2160163|gb|AAB60726.1| F21M12.9 gene product [Arabidopsis thaliana] gi|15451102|gb|AAK96822.1| Unknown protein [Arabidopsis thaliana] gi|20148393|gb|AAM10087.1| unknown protein [Arabidopsis thaliana] gi|332190360|gb|AEE28481.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana] Length = 419 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221 + K+ + + GP H F V + G+ +++AAEQ AA L+ Sbjct: 21 QEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALR 80 Query: 222 RE 223 Sbjct: 81 EL 82 Score = 40.3 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 26/76 (34%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + K LQE+A P Y+ +FT VEI G+ Sbjct: 90 QCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAA 149 Query: 205 DCSKRAAEQVAAAEVL 220 +K+ AE A L Sbjct: 150 TRTKKDAEISAGRTAL 165 >gi|116006497|ref|NP_013416.2| Mrpl15p [Saccharomyces cerevisiae S288c] gi|3123277|sp|P36523|RM15_YEAST RecName: Full=54S ribosomal protein L15, mitochondrial; AltName: Full=YmL15; Flags: Precursor gi|2258171|gb|AAB64533.1| Mrpl15p: mitochondrial ribosomal protein YmL15 [Saccharomyces cerevisiae] gi|285813726|tpg|DAA09622.1| TPA: Mrpl15p [Saccharomyces cerevisiae S288c] gi|323303777|gb|EGA57561.1| Mrpl15p [Saccharomyces cerevisiae FostersB] gi|323307957|gb|EGA61214.1| Mrpl15p [Saccharomyces cerevisiae FostersO] Length = 253 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 14/135 (10%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 + G +N L+ + LTH S +H + E+L LG + L L + A+ E Sbjct: 77 KYGINLSN-ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 135 Query: 72 SVRFNSL-------------VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 + LD F ++ ++ + T+I A V Sbjct: 136 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLDPFIFWKMRDPIKDGHINGETTIFASV 195 Query: 119 VESLIAALYLDGGIE 133 + + I A+ G E Sbjct: 196 LNAFIGAILSTNGSE 210 >gi|9759153|dbj|BAB09709.1| unnamed protein product [Arabidopsis thaliana] Length = 384 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKR 222 SG H P F+ VE++G+ +K+ AE+ AA LK+ Sbjct: 111 SGSCHFPGFSCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKK 155 Score = 42.6 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAAAEVSL 65 >gi|149431138|ref|XP_001511149.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus] Length = 197 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 4/87 (4%) Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP- 200 + + + K L EW H + P Y+ R + F VV ++ Sbjct: 83 MAVKFDKREYPAQITPKMCLLEWCHKEKLPQPVYETVQR---PSNGLFCSVVTVAEQKYK 139 Query: 201 AQGMDCSKRAAEQVAAAEVLKREGIWT 227 + D SK+ AEQ AA LK G+ T Sbjct: 140 SSMWDKSKKLAEQAAAIVCLKALGLPT 166 >gi|242760076|ref|XP_002339915.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500] gi|218723111|gb|EED22528.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500] Length = 129 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 8/64 (12%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + +++E IGY F +R LL KAL +Q +RL LGD+++ L++ + Sbjct: 1 MDCNSVEGIIGYTFNDRELLAKAL--------HQTQNKRLALLGDKVVALVLIDSWYQTG 52 Query: 64 DSAK 67 S Sbjct: 53 TSCS 56 >gi|58264874|ref|XP_569593.1| hypothetical protein CNC03670 [Cryptococcus neoformans var. neoformans JEC21] gi|57225825|gb|AAW42286.1| hypothetical protein CNC03670 [Cryptococcus neoformans var. neoformans JEC21] Length = 875 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR---- 74 + L +ALT S + +YERLE LGD +L I+ ++ H A E S++ Sbjct: 448 HPELALQALTAPSSQNVTPWTYERLEILGDTLLKFFITIHVYLHGGGANSREDSLKVWQD 507 Query: 75 FNSLVSAETCSQVARELDLASF 96 + LVS T + A +L L F Sbjct: 508 RHKLVSNRTLTANAIKLGLVEF 529 >gi|134109497|ref|XP_776863.1| hypothetical protein CNBC3540 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259543|gb|EAL22216.1| hypothetical protein CNBC3540 [Cryptococcus neoformans var. neoformans B-3501A] Length = 875 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR---- 74 + L +ALT S + +YERLE LGD +L I+ ++ H A E S++ Sbjct: 448 HPELALQALTAPSSQNVTPWTYERLEILGDTLLKFFITIHVYLHGGGANSREDSLKVWQD 507 Query: 75 FNSLVSAETCSQVARELDLASF 96 + LVS T + A +L L F Sbjct: 508 RHKLVSNRTLTANAIKLGLVEF 529 >gi|196007066|ref|XP_002113399.1| predicted protein [Trichoplax adhaerens] gi|190583803|gb|EDV23873.1| predicted protein [Trichoplax adhaerens] Length = 1440 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 58/190 (30%), Gaps = 16/190 (8%) Query: 8 TLEKRIGYAFANRSLLEKAL-----THSSISHSYQESYER-LEFLGDRILGLLIST--LL 59 ++K + Y F + SLL AL +SI + ++ LE +GD L ++ Sbjct: 28 EIQKNLKYDFKDSSLLLTALGKDNKLDTSIGLPGRYGNQQILEMIGDAWLRFVVLYKLYE 87 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + LVS +T + R+ + + A+ Sbjct: 88 MKEHTDGSAKSFNDATKWLVSNDTVLPEIGK-------RLGLEKCIRNITDKKKYLANYT 140 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 E+++ A +D V + + K + + + + Sbjct: 141 EAILGAAVIDDRNLHRSFQVVDRLWSPYINTYKNNDNNCDARPLFVSQEITNQNQANDEK 200 Query: 180 RSGPD-HDPR 188 G D H P Sbjct: 201 THGNDFHLPE 210 >gi|156554948|ref|XP_001602039.1| PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] Length = 350 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 1/73 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQ 213 + + L E+ + P Y+ GPD + +V ++G+ + +K+ A+ Sbjct: 277 KHPVSLLGEYCSKRKYGAPRYQEFCECGPDKKKSYLFMVVVNGITYKPAVANPNKKLAKV 336 Query: 214 VAAAEVLKREGIW 226 AA L+ G+ Sbjct: 337 EAAQLCLQSLGVL 349 >gi|187447240|emb|CAO84934.1| ENSANGG00000009686 protein [Anopheles gambiae] Length = 197 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 15/32 (46%) Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V I+ L G SK+ A+ AA E L+ Sbjct: 1 TVTINELKYGTGYGTSKKQAKSEAARETLEIL 32 >gi|322786736|gb|EFZ13103.1| hypothetical protein SINV_10097 [Solenopsis invicta] Length = 159 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 D +F V L A G+ SK+ A+Q AA +L Sbjct: 35 DRQFLCNVSCKELN-ASGIGISKKEAKQNAAKNML 68 >gi|19072786|gb|AAL84638.1|AF484524_1 endoribonuclease Dicer [Mus musculus x Mus spretus] Length = 1539 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1277 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYHDAHEGRLSYMRSKK 1334 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1335 VSNCNLYRLGKKKG 1348 >gi|50548505|ref|XP_501722.1| YALI0C11429p [Yarrowia lipolytica] gi|49647589|emb|CAG82032.1| YALI0C11429p [Yarrowia lipolytica] Length = 467 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 20/103 (19%) Query: 16 AFANRSLLEKALTHSS--------------------ISHSYQESYERLEFLGDRILGLLI 55 + L ++ TH S + SYERLEF+GD I+ ++ Sbjct: 146 EIKDGMLFKRVFTHRSMLLGDTGTASEVHKTATKAGYDQTGNFSYERLEFVGDSIVNNIL 205 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98 + ++++ F + LS +++ + A S +R Sbjct: 206 TKIIYDVFPGDDQSHLSFLRGQVIANIVLCRWAAIYGFPSKLR 248 >gi|307197029|gb|EFN78401.1| 39S ribosomal protein L44, mitochondrial [Harpegnathos saltator] Length = 284 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 73/234 (31%), Gaps = 19/234 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI---------------SHSYQESYERLEFLGDRI 50 KR+ F + LE+A TH + G+++ Sbjct: 35 IYAFNKRLSENF-DIEKLEQAFTHKVYIFKEEQKQKEIGIEDPKLNIKDNTTFIIKGEKL 93 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + ++ + L A E + + L+S E + + + + ++ Sbjct: 94 VSEIVQSYLTEALSLAPEDVIISLHDYLLSEEILASASLHIGAKD--IILTEEHPVAQKT 151 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 + + +L ++ ++ + F+ ++ L L H + Sbjct: 152 LADTFFALTAALAESVDVNHAGKFIRDFLIVLLAEKDLMEIWNPSQPCEILDNVLHKQDR 211 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 E ++ +G + + + + + G + + A+ VAA VL R Sbjct: 212 SPAEPRLIGHAGQNTLLASYHIGLYSNKEFLGSGFGQTIQEAKDVAAMNVLSRM 265 >gi|291392312|ref|XP_002712549.1| PREDICTED: mitochondrial ribosomal protein L44 [Oryctolagus cuniculus] Length = 332 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 71/234 (30%), Gaps = 29/234 (12%) Query: 12 RIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGDRILGLL 54 R+ F+ LL+ A + S + + L G Sbjct: 78 RLQETFS-LDLLKTAFVNKCYIKSEEAKRQKLGIEKEAVRLNIKDNQELSTQGSSFSRTC 136 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ++ L + + + + L S E VAR L + + S+ Sbjct: 137 LTQFLEDEYPDLPAEGIESLVDFLTSEEVVCHVARNLAVEQLTLSADFP------VPPSV 190 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL----KSGKFRRDAKTELQEWAHAKFG 170 ++I AL G E F+ + + + L E + Sbjct: 191 LQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWKIINPMGLLVEELKKRKI 250 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 251 SAPESRLTRQSGSTTALPLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304 >gi|224129272|ref|XP_002328933.1| predicted protein [Populus trichocarpa] gi|222839363|gb|EEE77700.1| predicted protein [Populus trichocarpa] Length = 133 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220 R GPDH PRF V +G + R AE AA L Sbjct: 14 CFNLPAYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVAL 65 >gi|34978642|gb|AAQ83572.1| VP11 [Liao ning virus] Length = 198 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 Y+ GP H+ FT+V +G+ SK+ A +AA +++ Sbjct: 28 YEDVGFEGPPHNRSFTIVATFRDKKY-EGIGPSKKVARSIAANKII 72 >gi|290562111|gb|ADD38452.1| Double-stranded RNA-specific editase 1 [Lepeophtheirus salmonis] Length = 296 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE-GI 225 F + V + G+ +G +K+ +++ A LK+ GI Sbjct: 252 IFVMSVTVDGVTF-EGEGKNKKDSKRNCALAALKKIYGI 289 Score = 39.1 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 FT + G + SK+ A+ + A ++ Sbjct: 91 FTAQCTVEGRDY-EASGPSKQMAKNLCAESAIQAL 124 >gi|300121933|emb|CBK22507.2| unnamed protein product [Blastocystis hominis] Length = 103 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 20/41 (48%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 H+ RF V ++ + +G S + A AA + L+ G+ Sbjct: 57 HENRFHVRAKVDDVLVGEGTGSSVKIATSYAAWKGLEALGV 97 >gi|313233857|emb|CBY10026.1| unnamed protein product [Oikopleura dioica] Length = 500 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P FT+V +I ++ + SK+ A+ AA+ +LK Sbjct: 252 PPFTIVCQIDDMS-TEATGNSKKEAKHRAASSMLKNL 287 Score = 39.9 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 5/91 (5%) Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLA 199 + K+ + R +ELQE+ + P Y G +H FT I L Sbjct: 394 HQPASQPDKNHEVNRHPVSELQEYLQQRHISAPAYFFIPHDGGYEHLKEFTCKCTIDELN 453 Query: 200 P-AQGMDCSKRAAEQVAAAEVLK---REGIW 226 + +++ A + AA ++LK + I Sbjct: 454 LQVKERRKNQKIARKAAATQMLKDLLKIKII 484 >gi|311246431|ref|XP_003122205.1| PREDICTED: spermatid perinuclear RNA-binding protein-like [Sus scrofa] Length = 619 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVA 444 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 477 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 505 >gi|73968133|ref|XP_863822.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein isoform 7 [Canis familiaris] Length = 619 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 + +YK+ +SGP H P FT+ V++ G + SK+ A+ A Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVA 444 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 477 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 505 >gi|47210542|emb|CAF93934.1| unnamed protein product [Tetraodon nigroviridis] Length = 1479 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 N L+ +ALT S+ S + + ERLE LGD L I+T LF + A EG LS + Sbjct: 1348 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1405 Query: 79 VSAETCSQVARELD 92 VS ++ ++ Sbjct: 1406 VSNCNLYRLGKKKG 1419 >gi|91084515|ref|XP_967225.1| PREDICTED: similar to DISCO Interacting Protein 1 CG17686-PC isoform 1 [Tribolium castaneum] gi|270012651|gb|EFA09099.1| hypothetical protein TcasGA2_TC015220 [Tribolium castaneum] Length = 359 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 35/121 (28%), Gaps = 2/121 (1%) Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165 D + + S K +A Sbjct: 229 DGTPTLPWQHVASFALYKLLNAWGEDPNQTRGDAGPGQIPQNRPSRKMPENAAHMNPLML 288 Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR-EG 224 + +++ R+G + FT + G + G +K++A+++AA V + G Sbjct: 289 LNQMMPHAQFEELGRTGNPPNVIFTFKCTVGGQSF-NGTGPNKKSAKKMAAFAVCHKMLG 347 Query: 225 I 225 I Sbjct: 348 I 348 Score = 42.6 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + Y VT P ++T V + G+ G SK A+ +AA LK Sbjct: 154 KSATYTVTDVPQPPEMNQYTATVLVDGVTH-IGHGRSKMEAKSMAAENALK 203 >gi|121711409|ref|XP_001273320.1| RNase3 domain protein [Aspergillus clavatus NRRL 1] gi|119401471|gb|EAW11894.1| RNase3 domain protein [Aspergillus clavatus NRRL 1] Length = 421 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 36/103 (34%), Gaps = 6/103 (5%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 +E+ GY F + LL +A+T + + + L +G + L + + Sbjct: 5 DKIEQISGYRFRDERLLHEAMTAAGADENNHDGNRPLAQVGKSFVELCSVKFGYLNRTE- 63 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 ++ + C+ +A+E+ + + + Sbjct: 64 -----RALKIQNINNDRCALIAKEIGIDQHLTYCPRHQGYSKK 101 >gi|145523303|ref|XP_001447490.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124415001|emb|CAK80093.1| unnamed protein product [Paramecium tetraurelia] Length = 419 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 71/229 (31%), Gaps = 19/229 (8%) Query: 15 YAFANRSLLEKALT---H------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + F N ++L +ALT H + + E +G IL S L Sbjct: 94 FRFQNTNILAQALTNKIHELEYQSKKGTKYPFGNNEEFIVIGQMILEFYFSDYLMQRGYP 153 Query: 66 AKEGELSV------RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 K+ + L++ + +++A + ++ +F+++ + S + + + Sbjct: 154 KKDSSIKKPSDLVLLRQRLLNDKNLAEIAIQYNVHNFVQIGNQTALKKNSKVLAETLKAM 213 Query: 120 ESLIAA---LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + L+ E+ + + + + + Sbjct: 214 VAAQYYDSGFDLEHTREILQSILKELLDKGQNVPIAELKQNPKTSFLEYINNQTDLIPKV 273 Query: 177 VTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 ++ + + +E+ +KR EQ+ E LK+ Sbjct: 274 SVEWKKDENSINVYKIQLELDSYINITKTGANKRQTEQLVYQEALKQIK 322 >gi|195132199|ref|XP_002010531.1| GI14629 [Drosophila mojavensis] gi|193908981|gb|EDW07848.1| GI14629 [Drosophila mojavensis] Length = 458 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 47/156 (30%), Gaps = 8/156 (5%) Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 + R + +T Q+ L + R K+ + L L Sbjct: 293 TPRGKRFLQCQTLQQICEIWGLGDYCRRKQQELKEHGNG-----GRANVILTECLAKRQK 347 Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH--DPRF 189 +E + D+Y R ++ Q + + + S H D F Sbjct: 348 LERSEDLSDEYEGVICRNMAFLRSTYPSDTQLPKMVLYVLAGKLGKQAPSYETHQCDKLF 407 Query: 190 TVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224 + G + + +K+ AEQ AA L + G Sbjct: 408 RSICSYDGQRFSSSFWEKNKKQAEQGAALVALLQLG 443 >gi|125526376|gb|EAY74490.1| hypothetical protein OsI_02382 [Oryza sativa Indica Group] Length = 256 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 6/82 (7%) Query: 7 STLEKRIG-YAFANRS--LLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLF 60 + +E+ +G Y+F + LLE ALTHS + ++RLEFLGD LGL +T+ + Sbjct: 22 AEVERALGGYSFRDGGALLLEDALTHSVHPRDEAGGRARHQRLEFLGDAALGLAFATIFY 81 Query: 61 NHFDSAKEGELSVRFNSLVSAE 82 +G+L+V ++ VS + Sbjct: 82 RDDPGLDQGDLTVLRSANVSTQ 103 >gi|115437482|ref|NP_001043306.1| Os01g0551100 [Oryza sativa Japonica Group] gi|75105855|sp|Q5JK90|RTL1_ORYSJ RecName: Full=Ribonuclease 3-like protein 1; AltName: Full=Ribonuclease III-like protein 1; Short=RNase III-like protein 1 gi|57900069|dbj|BAD88131.1| unknown protein [Oryza sativa Japonica Group] gi|57900480|dbj|BAD87969.1| unknown protein [Oryza sativa Japonica Group] gi|113532837|dbj|BAF05220.1| Os01g0551100 [Oryza sativa Japonica Group] gi|215695480|dbj|BAG90671.1| unnamed protein product [Oryza sativa Japonica Group] Length = 256 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 6/82 (7%) Query: 7 STLEKRIG-YAFANRS--LLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLF 60 + +E+ +G Y+F + LLE ALTHS + ++RLEFLGD LGL +T+ + Sbjct: 22 AEVERALGGYSFRDGGALLLEDALTHSVHPRDEAGGRARHQRLEFLGDAALGLAFATIFY 81 Query: 61 NHFDSAKEGELSVRFNSLVSAE 82 +G+L+V ++ VS + Sbjct: 82 RDDPGLDQGDLTVLRSANVSTQ 103 >gi|170055796|ref|XP_001863741.1| ATP-dependent RNA helicase [Culex quinquefasciatus] gi|167875616|gb|EDS38999.1| ATP-dependent RNA helicase [Culex quinquefasciatus] Length = 378 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 SGP + RF V + +A G +K+ AE+ AA + Sbjct: 201 STSGPKNRQRFLCEVRVPNVAYVGAGNSTNKKDAERNAARD 241 >gi|300123389|emb|CBK24662.2| unnamed protein product [Blastocystis hominis] Length = 326 Score = 46.1 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 17/158 (10%), Positives = 39/158 (24%), Gaps = 1/158 (0%) Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 E V + ++ R ++ Sbjct: 164 PLAEFYPECQHRVMNINTIVEMIIAFKETNDWKTTFERCIPLRKKKVEDETGHSFDYHSI 223 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + +E + ++ + ++ E + + P + Sbjct: 224 HSVKELESISEYRINRFQLKHALHIYCQKHQLDYEFENREIPYEEYEQEVKEQEEKPPYF 283 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F V++ G +G S+R+A+ AA L G Sbjct: 284 R-FHAKVKVDGKMMGEGKGKSQRSAQGKAAWYALVELG 320 >gi|238575785|ref|XP_002387790.1| hypothetical protein MPER_13270 [Moniliophthora perniciosa FA553] gi|215448580|gb|EEB88720.1| hypothetical protein MPER_13270 [Moniliophthora perniciosa FA553] Length = 361 Score = 46.1 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 22/41 (53%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 + GP HDP +TVV E++G +G S + A AA + Sbjct: 311 SKEGPPHDPVWTVVYELNGQTQGKGTGRSMQIATHAAATDA 351 >gi|157134083|ref|XP_001663138.1| hypothetical protein AaeL_AAEL012964 [Aedes aegypti] gi|108870604|gb|EAT34829.1| conserved hypothetical protein [Aedes aegypti] Length = 360 Score = 46.1 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F+V V + G G SK+ A + AA ++ Sbjct: 312 KREFSVGVTVDGQRF-IGKARSKKLARKEAAVAACRQL 348 >gi|193661999|ref|XP_001947403.1| PREDICTED: microprocessor complex subunit DGCR8-like [Acyrthosiphon pisum] Length = 650 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/88 (12%), Positives = 27/88 (30%) Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 T R + + + + + F+ + + ++ V + Sbjct: 359 QTEDHDKRCNRRREWIMNPNGKSYVSILHEYLQQALKTQPWYEFKELENTETPYSATVVL 418 Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + G+ SK+ A+ AA L Sbjct: 419 NDVQYGVGLGNSKKQAKLNAAQATLDIL 446 >gi|322795850|gb|EFZ18529.1| hypothetical protein SINV_15805 [Solenopsis invicta] Length = 138 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 18/38 (47%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 R V V++ G +G+ + R A+ AA LK+ Sbjct: 90 RRVRVTVDVFGKGSFKGIGRNYRIAKCTAAKCALKKLK 127 >gi|118090288|ref|XP_420624.2| PREDICTED: similar to testis nuclear RNA binding protein [Gallus gallus] Length = 570 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 ++ + ++K T +G F + + G+ G+ SK+ ++Q AA L Sbjct: 101 HRFAQRYSMQLDFKETGVAGHAISSYFGISAVLDGVYYKTGLGRSKKESKQSAAKLALDE 160 Query: 223 E 223 Sbjct: 161 L 161 >gi|328785857|ref|XP_395948.4| PREDICTED: hypothetical protein LOC412491 [Apis mellifera] Length = 521 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 1/60 (1%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + ++ GP + + V E+ G G SK A Q AA LK Sbjct: 267 MVLNEMKPGVQFTFPETQGPMPNSLYLVHAELDGKTY-VGQGLSKPLARQNAAENALKAL 325 >gi|332022056|gb|EGI62381.1| 39S ribosomal protein L44, mitochondrial [Acromyrmex echinatior] Length = 314 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 74/232 (31%), Gaps = 21/232 (9%) Query: 8 TLEKRIGYAFANRSLLEKALTHSSI--SHSYQ-------------ESYERLEFLGDRILG 52 +R+ +F N LE+A T+ S + + L G+++ Sbjct: 68 AFNERLSESF-NMEKLEQAFTNRSYFIQEEQKQKEMGIENPVLDIKDNTELIIKGEKLTS 126 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 ++ L A E + + L+S E ++ A + I + Sbjct: 127 EIVQAYLVQVLPQASEDVIISLHDYLLSEEILAKAAFHIGTKDIILT----EAIAQKTLA 182 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 +V +L ++ ++ F+ ++ L + L + + Sbjct: 183 DTFFALVAALAESVDVNHTANFVRDFLIVILAEKDLTEIWKPANPVELLNDILRKQNRSL 242 Query: 173 PEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 E ++ + G + + + + + G + + A+ AA VL R Sbjct: 243 AEPRLIAQVGENTLEVVYHIALYCDKEFLGSGFGQTIQEAKNTAAINVLSRI 294 >gi|324508716|gb|ADY43677.1| Microprocessor complex subunit DGCR8/PASHA [Ascaris suum] Length = 637 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 38/136 (27%), Gaps = 8/136 (5%) Query: 88 ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147 ++ + SI + V+ ++ + E + R Sbjct: 273 VPSMEANLKPQHKGFFLNPQGKTSISILHEYVQKVLKSTINYQFTETRSSSTPYGCSARL 332 Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + R + T ++E + ++G D F V G S Sbjct: 333 KMNLNNRVMSATSIKEKLMLLQEKQRREQQLQQNGEPIDSEFVV--------LGSGCGNS 384 Query: 208 KRAAEQVAAAEVLKRE 223 K+ A+ AA LK Sbjct: 385 KKTAKLDAARSALKVL 400 >gi|115758842|ref|XP_001203807.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8, partial [Strongylocentrotus purpuratus] gi|115943248|ref|XP_001198796.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8, partial [Strongylocentrotus purpuratus] Length = 417 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 1/66 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + + T V S P F +VEI G+ +G SKR A+ AA Sbjct: 174 PVCILHEYAQRVMRTQPQYVFGESRNASAP-FEALVEIKGMKYGRGEATSKRLAKAEAAK 232 Query: 218 EVLKRE 223 + L Sbjct: 233 KTLDIL 238 >gi|307207077|gb|EFN84886.1| tRNA-dihydrouridine synthase 2-like [Harpegnathos saltator] Length = 512 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 28/103 (27%), Gaps = 6/103 (5%) Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + + KT L +W P Y Sbjct: 401 CISQKRKMHDEEDVALMRCAFLRSSYTTDSELPKTRLCKWTKDHHKKMPVYDTRK----- 455 Query: 185 HDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGIW 226 +D F VV + G + +K+ AEQ AA L GI Sbjct: 456 NDKLFCSVVTVDGRKYGSSFWEKNKKWAEQGAALVCLYFLGII 498 >gi|147900893|ref|NP_001087171.1| spermatid perinuclear RNA-binding protein [Xenopus laevis] gi|82182202|sp|Q6DCD0|STRBP_XENLA RecName: Full=Spermatid perinuclear RNA-binding protein gi|50415523|gb|AAH78118.1| Strbp-prov protein [Xenopus laevis] Length = 686 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K + + +YK+ +SGP H P FT+ V++ G + SK+ A Sbjct: 381 KPIDPNQPMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTH-EASGPSKKTA 439 Query: 212 EQVAAAEVLKREGIWT 227 + +VL+ G T Sbjct: 440 KLYVTVKVLQAMGYPT 455 >gi|70998456|ref|XP_753950.1| dsRNA-specific ribonuclease III [Aspergillus fumigatus Af293] gi|66851586|gb|EAL91912.1| dsRNA-specific ribonuclease III, putative [Aspergillus fumigatus Af293] gi|159126317|gb|EDP51433.1| dsRNA-specific ribonuclease III, putative [Aspergillus fumigatus A1163] Length = 142 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 10/98 (10%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 +E+ +GY F + +++ +A+ +E RL FLGD+++GL++ + + S + Sbjct: 11 IEEILGYTFQDPTIVYEAV--------SRERNPRLAFLGDKVVGLILLDIWYRTETSCAQ 62 Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 G R + + + A L L +F + Sbjct: 63 GYS--RLQDYATNKAMAHQAIRLHLDAFAAPGPSQSQR 98 >gi|299756402|ref|XP_002912199.1| hypothetical protein CC1G_13731 [Coprinopsis cinerea okayama7#130] gi|298411660|gb|EFI28705.1| hypothetical protein CC1G_13731 [Coprinopsis cinerea okayama7#130] Length = 79 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 DA + L ++ + GP HD ++T V +I G +G K A+ Sbjct: 1 MSNDAISRLNQYLNKIGKAASLSWQECNYGPPHDSKWTCVCKIDGEPRGEGTSTHKHTAK 60 Query: 213 QVAAAEVL 220 +AA + L Sbjct: 61 NIAAEQAL 68 >gi|303272367|ref|XP_003055545.1| predicted protein [Micromonas pusilla CCMP1545] gi|226463519|gb|EEH60797.1| predicted protein [Micromonas pusilla CCMP1545] Length = 348 Score = 45.7 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 60/203 (29%), Gaps = 11/203 (5%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA--------KEGELSVRFNSLVSA 81 S+ E+ ERL F GD++L ++ L+ R ++LV++ Sbjct: 101 RSVPRDGAET-ERLAFFGDKVLNHAVAMSLYAQQVRMRERPGHEDDASYCVGRMSTLVAS 159 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 +++ L + A + G + T VD+ Sbjct: 160 ARSNKLFTRLLARLLRDDMIAAVPPGALEKGRAHSVGTMIEAAVFLVHEGSDEGQTAVDE 219 Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAP 200 ++ + + E+ D D F + G+ Sbjct: 220 VGLFLLEQAEEMAAEVFNFKGEFYELVAKGVEGEMEVKTLKEDRPDEYFMAYATLDGVK- 278 Query: 201 AQGMDCSKRAAEQVAAAEVLKRE 223 A +K AE AA VL+R Sbjct: 279 ANARGRNKLEAEHGAAKAVLERL 301 >gi|240142575|ref|YP_002967088.1| hypothetical protein MexAM1_META2p0952 [Methylobacterium extorquens AM1] gi|240012522|gb|ACS43747.1| Hypothetical protein MexAM1_META2p0952 [Methylobacterium extorquens AM1] Length = 690 Score = 45.7 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 4/53 (7%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEI--SGLAPAQ--GMDCSKRAAEQVAAAEVL 220 GP H P FT V + G SK+ AE+VAA +L Sbjct: 624 PMPRFEVKGDGPSHAPTFTAVARLRAGGRDLVTPACAGRSKKEAERVAARAML 676 >gi|198459278|ref|XP_001361331.2| GA11141 [Drosophila pseudoobscura pseudoobscura] gi|198136635|gb|EAL25909.2| GA11141 [Drosophila pseudoobscura pseudoobscura] Length = 1318 Score = 45.7 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 + T ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLFQFCAKTRTEPKLEVRQTGPKNRQRFLCEVRVEQTPYIGVGNSTNKKDAEKNACRD 63 >gi|195155374|ref|XP_002018580.1| GL17788 [Drosophila persimilis] gi|194114376|gb|EDW36419.1| GL17788 [Drosophila persimilis] Length = 1318 Score = 45.7 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 1/59 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 + T ++GP + RF V + G +K+ AE+ A + Sbjct: 5 SFLFQFCAKTRTEPKLEVRQTGPKNRQRFLCEVRVEQTPYIGVGNSTNKKDAEKNACRD 63 >gi|297849274|ref|XP_002892518.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp. lyrata] gi|297338360|gb|EFH68777.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp. lyrata] Length = 376 Score = 45.7 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKRE 223 T + GP H F V ++G+ +++AAEQ AA L+ Sbjct: 34 YETVKEGPSHKSFFQSTVILNGVRYNSLPGFFNRKAAEQSAAEVALQEL 82 Score = 40.3 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 26/76 (34%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + K LQE+A P Y+ +FT VEI G+ Sbjct: 90 QCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQRIETLGRATQFTCTVEIGGIKYTGAA 149 Query: 205 DCSKRAAEQVAAAEVL 220 +K+ AE A L Sbjct: 150 TRTKKDAEISAGRTAL 165 >gi|198420373|ref|XP_002122509.1| PREDICTED: similar to dsRNA adenosine deaminase [Ciona intestinalis] Length = 517 Score = 45.7 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 23/67 (34%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 +A+ SGP H F+ V I G+ +K+ ++ +A Sbjct: 58 NPISVINEYAQSKQLSVKCEVSSSGPSHKQMFSTVFTIGDDVFPAGIGSNKKESKVKSAE 117 Query: 218 EVLKREG 224 VL + Sbjct: 118 IVLHQLK 124 >gi|115704787|ref|XP_795846.2| PREDICTED: similar to DiGeorge syndrome critical region gene 8 [Strongylocentrotus purpuratus] gi|115951896|ref|XP_001182584.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8 [Strongylocentrotus purpuratus] Length = 416 Score = 45.7 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 1/66 (1%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 + + T V S P F +VEI G+ +G SKR A+ AA Sbjct: 173 PVCILHEYAQRVMRTQPQYVFGESRNASAP-FEALVEIKGMKYGRGEATSKRLAKAEAAK 231 Query: 218 EVLKRE 223 + L Sbjct: 232 KTLDIL 237 >gi|291448524|ref|ZP_06587914.1| predicted protein [Streptomyces roseosporus NRRL 15998] gi|291351471|gb|EFE78375.1| predicted protein [Streptomyces roseosporus NRRL 15998] Length = 775 Score = 45.7 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 61/219 (27%), Gaps = 28/219 (12%) Query: 23 LEKALTHSSISHSYQ--------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 L +ALTHSS H + + L G +L L + Sbjct: 467 LTQALTHSSYVHENRTDVAAHHQRDNQLLAHHGSLVLNHLAKHARVGRILAHGLVPDEDE 526 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 ++ L A + + S S AD +S+ A + G + Sbjct: 527 ARMHT---PANEDTARLGTALALADGMRTGRGEDSQRRSTVADAAQSVAATAWRLHGTRL 583 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + + + R+G DH FT + Sbjct: 584 LRRRPAV----LDGWLSELQYQHEPVTALNLLTTMFGMTHHYEYERTGLDHLQTFTSTLV 639 Query: 195 ISGLAPAQG---------MD-CSKRAAEQVAAAEVLKRE 223 +S A+G SK A++ A +VL+ Sbjct: 640 LSD---ARGRVHRWAVPPEGPSSKSDADKTTAQDVLEIL 675 Score = 37.6 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 15/29 (51%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDHD R+ + G A+G +K+ Sbjct: 372 EGPDHDKRYIAIARTGGGRSARGEGRNKK 400 >gi|239945065|ref|ZP_04697002.1| hypothetical protein SrosN15_29015 [Streptomyces roseosporus NRRL 15998] gi|239991527|ref|ZP_04712191.1| hypothetical protein SrosN1_29757 [Streptomyces roseosporus NRRL 11379] Length = 591 Score = 45.7 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 61/219 (27%), Gaps = 28/219 (12%) Query: 23 LEKALTHSSISHSYQ--------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74 L +ALTHSS H + + L G +L L + Sbjct: 283 LTQALTHSSYVHENRTDVAAHHQRDNQLLAHHGSLVLNHLAKHARVGRILAHGLVPDEDE 342 Query: 75 FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 ++ L A + + S S AD +S+ A + G + Sbjct: 343 ARMHT---PANEDTARLGTALALADGMRTGRGEDSQRRSTVADAAQSVAATAWRLHGTRL 399 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194 + + + + R+G DH FT + Sbjct: 400 LRRRPAV----LDGWLSELQYQHEPVTALNLLTTMFGMTHHYEYERTGLDHLQTFTSTLV 455 Query: 195 ISGLAPAQG---------MD-CSKRAAEQVAAAEVLKRE 223 +S A+G SK A++ A +VL+ Sbjct: 456 LSD---ARGRVHRWAVPPEGPSSKSDADKTTAQDVLEIL 491 Score = 37.6 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 15/29 (51%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 GPDHD R+ + G A+G +K+ Sbjct: 188 EGPDHDKRYIAIARTGGGRSARGEGRNKK 216 >gi|301055340|ref|YP_003793551.1| C-terminal part of ribonuclease III [Bacillus anthracis CI] gi|300377509|gb|ADK06413.1| C-terminal part of ribonuclease III [Bacillus cereus biovar anthracis str. CI] Length = 74 Score = 45.7 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 D K++LQE EY++ GP H+ F V ++ +A G SK+ Sbjct: 1 MMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTLNNVALGLGSGKSKK 56 >gi|198414898|ref|XP_002128212.1| PREDICTED: similar to LOC495438 protein [Ciona intestinalis] Length = 802 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 Y + ++G RFT V G +G +K+ A+ AA L R Sbjct: 190 YDLIEQTGNGTSTRFTFQVVFRGEIY-KGSGVNKKMAKHEAAKAALSR 236 Score = 39.1 bits (89), Expect = 0.50, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + G +Y R G FT+ V ++G A QG +K+ A+ A +L+ Sbjct: 326 NEMVGPGIQYNCVDRVGDQKSHYFTMEVCLNGRAY-QGQGKNKKLAKAGVAMRILR 380 >gi|114583638|ref|XP_526045.2| PREDICTED: 39S ribosomal protein L44, mitochondrial [Pan troglodytes] Length = 332 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 71/236 (30%), Gaps = 21/236 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48 R+ F+ LL+ A +S S +S + L G Sbjct: 72 IQAFGHRLQENFS-LDLLKTAFVNSCYIKSEEAKRQQLGIEKEAVLLNLKSNQELSEQGT 130 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ L + + + + L E VAR L + Sbjct: 131 SFSQTCLTQFLEDEYPDMPTEGIKNLVDFLTGEEVVCHVARNLAVEQLTLSEEFPVPP-- 188 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + + V+ +L+ + + F+ + L + L E + Sbjct: 189 TVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWKIINPMGLLVEELKKR 248 Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 249 NVSPPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304 >gi|301758056|ref|XP_002914888.1| PREDICTED: interferon-induced, double-stranded RNA-activated protein kinase-like [Ailuropoda melanoleuca] Length = 539 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E GP+ RF +I A G +K+ A+Q+AA + Sbjct: 119 VNYEQCELKEYGPE---RFYYRCKIGQKEYAVGGGATKQDAKQMAAKFAYDQI 168 Score = 34.9 bits (78), Expect = 7.7, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 14/31 (45%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 Y + GP H+ +FT V I+ ++ Sbjct: 27 YYELSKEGPAHNLKFTFQVIINERKYSEAEG 57 >gi|281341947|gb|EFB17531.1| hypothetical protein PANDA_002815 [Ailuropoda melanoleuca] Length = 371 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E GP+ RF +I A G +K+ A+Q+AA + Sbjct: 39 VNYEQCELKEYGPE---RFYYRCKIGQKEYAVGGGATKQDAKQMAAKFAYDQI 88 >gi|297803978|ref|XP_002869873.1| hypothetical protein ARALYDRAFT_492708 [Arabidopsis lyrata subsp. lyrata] gi|297315709|gb|EFH46132.1| hypothetical protein ARALYDRAFT_492708 [Arabidopsis lyrata subsp. lyrata] Length = 965 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 17/36 (47%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF+V +S +G+ S+R A AA ++ Sbjct: 753 RFSVEAWLSNEKIGEGIGKSRREALHKAAEASIQNL 788 Score = 38.0 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 13/36 (36%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H VEI G +G+ + A AA L Sbjct: 883 HRDELRAQVEIDGRVVGEGVGSTWDEARMQAAERAL 918 >gi|332029375|gb|EGI69330.1| Double-stranded RNA-specific editase 1 [Acromyrmex echinatior] Length = 356 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP + + V E+ G G SK A Q AA LK Sbjct: 125 ETQGPMPNSLYLVHAELDGKTY-VGQGLSKPLARQNAAENALKAL 168 >gi|110738453|dbj|BAF01152.1| hypothetical protein [Arabidopsis thaliana] Length = 967 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 17/36 (47%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF+V +S +G+ S+R A AA ++ Sbjct: 755 RFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNL 790 Score = 38.4 bits (87), Expect = 0.80, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 13/36 (36%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H VEI G +G+ + A AA L Sbjct: 885 HRDELHAQVEIDGRVVGEGVGSTWDEARMQAAERAL 920 >gi|62321227|dbj|BAD94401.1| putative protein [Arabidopsis thaliana] Length = 614 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 17/36 (47%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF+V +S +G+ S+R A AA ++ Sbjct: 402 RFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNL 437 Score = 38.4 bits (87), Expect = 0.80, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 13/36 (36%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H VEI G +G+ + A AA L Sbjct: 532 HRDELHAQVEIDGRVVGEGVGSTWDEARMQAAERAL 567 >gi|79481163|ref|NP_193898.3| CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1); double-stranded RNA binding / nucleotide phosphatase [Arabidopsis thaliana] gi|75111335|sp|Q5YDB6|CPL1_ARATH RecName: Full=RNA polymerase II C-terminal domain phosphatase-like 1; Short=FCP-like 1; AltName: Full=Carboxyl-terminal phosphatase-like 1; Short=AtCPL1; Short=CTD phosphatase-like 1; AltName: Full=Protein FIERY 2; AltName: Full=Protein JASMONATE OVEREXPRESSING 1 gi|49175305|gb|AAT52022.1| C-terminal domain phosphatase-like 1 [Arabidopsis thaliana] gi|332659088|gb|AEE84488.1| RNA polymerase II C-terminal domain phosphatase-like 1 [Arabidopsis thaliana] Length = 967 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 17/36 (47%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF+V +S +G+ S+R A AA ++ Sbjct: 755 RFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNL 790 Score = 38.4 bits (87), Expect = 0.80, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 13/36 (36%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H VEI G +G+ + A AA L Sbjct: 885 HRDELHAQVEIDGRVVGEGVGSTWDEARMQAAERAL 920 >gi|4455275|emb|CAB36811.1| putative protein [Arabidopsis thaliana] gi|7268964|emb|CAB81274.1| putative protein [Arabidopsis thaliana] Length = 995 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 17/36 (47%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF+V +S +G+ S+R A AA ++ Sbjct: 769 RFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNL 804 Score = 38.4 bits (87), Expect = 0.80, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 13/36 (36%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H VEI G +G+ + A AA L Sbjct: 899 HRDELHAQVEIDGRVVGEGVGSTWDEARMQAAERAL 934 >gi|324505424|gb|ADY42332.1| Double-stranded RNA-specific editase B2 [Ascaris suum] Length = 863 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 170 GVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + T+ + PD PRF + G SK+ A+Q+A LK Sbjct: 132 YPDFKDQCTYDTLPDMKVPRFVCKFSVQGKEF-SADASSKKIAKQLACERALKDL 185 >gi|222636484|gb|EEE66616.1| hypothetical protein OsJ_23196 [Oryza sativa Japonica Group] gi|305682532|dbj|BAJ16352.1| small RNA methyltransferase [Oryza sativa Japonica Group] Length = 938 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 188 RFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225 + ++I GL G K+ AEQ AA L + GI Sbjct: 48 VYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGI 86 >gi|218199137|gb|EEC81564.1| hypothetical protein OsI_25006 [Oryza sativa Indica Group] Length = 938 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 188 RFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225 + ++I GL G K+ AEQ AA L + GI Sbjct: 48 VYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGI 86 >gi|115470715|ref|NP_001058956.1| Os07g0164000 [Oryza sativa Japonica Group] gi|113610492|dbj|BAF20870.1| Os07g0164000 [Oryza sativa Japonica Group] gi|215767104|dbj|BAG99332.1| unnamed protein product [Oryza sativa Japonica Group] Length = 926 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 188 RFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225 + ++I GL G K+ AEQ AA L + GI Sbjct: 62 VYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGI 100 >gi|50510095|dbj|BAD30766.1| putative HEN1 [Oryza sativa Japonica Group] Length = 929 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 188 RFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225 + ++I GL G K+ AEQ AA L + GI Sbjct: 48 VYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGI 86 >gi|331236920|ref|XP_003331118.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309310108|gb|EFP86699.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1410 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 84/258 (32%), Gaps = 58/258 (22%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L+ LE++IGY F + LLE E+LGD ++ + I + F Sbjct: 1110 LKCQALEEKIGYVFKEK-LLE-------------------EWLGDAVVDMWIVQHAYKRF 1149 Query: 64 DSAKEGELSVRFNSLVSAET-CSQVARELDLASFIRVSSD-------------------- 102 D+A EL++ LVS + ++L L I S+ Sbjct: 1150 DNATAEELTLARAKLVSNGSLGFLAIKKLGLHKMIMHKSESFEQACVEAIKAIEPFTSIE 1209 Query: 103 ------LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS---GKF 153 V I DV+E+++ A+++D ++ + + Sbjct: 1210 EFFSNLENLFVVFDPPKILNDVLEAIVGAVFIDSRFDLPTVYRTIDKIFEDVTPGLSRIV 1269 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVT-----FRSGPDHDPRF--TVVVEISGLAPAQGM-D 205 RD + + T G D DP +E+ G A G Sbjct: 1270 ARDPLSTMLRLRDQYQCAELRRVSTTIKEPNPEGEDKDPISVKVCRIELHGQEIASGRHA 1329 Query: 206 CSKRAAEQVAAAEVLKRE 223 S AEQ A+ LK Sbjct: 1330 SSASVAEQRASLAALKVL 1347 >gi|288923600|ref|ZP_06417710.1| double-stranded RNA binding domain protein [Frankia sp. EUN1f] gi|288345062|gb|EFC79481.1| double-stranded RNA binding domain protein [Frankia sp. EUN1f] Length = 110 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%) Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKR 222 GPDH RFT ++G +G SK+ AEQ AAA +L++ Sbjct: 21 GPDHAKRFTAFARVAGEVLGEGEGGSKKEAEQRAAATAFAMLEK 64 >gi|302698141|ref|XP_003038749.1| hypothetical protein SCHCODRAFT_64720 [Schizophyllum commune H4-8] gi|300112446|gb|EFJ03847.1| hypothetical protein SCHCODRAFT_64720 [Schizophyllum commune H4-8] Length = 278 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 54/195 (27%), Gaps = 12/195 (6%) Query: 42 RLEFLGDRILGLLI-STLLFNHFDSAKEGELSVRFNSLVS---AETCSQVARELDLASFI 97 R E L D + + + L +A + R + V+ + + + Sbjct: 79 RREALSDDRINHWMDAYELKGKIKAAPSERQAARSSPQVNDFFKKYVGAIYIRQGMGVIQ 138 Query: 98 RVS--------SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 + Q ++ A + + Sbjct: 139 TWISRLLNPDAEPVLPPEGRGTPQPQRQGSLLQDRSMASPPPPPGAPPPMPMGAPPGSSH 198 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + + A ++GP H P ++V ++G G S++ Sbjct: 199 PMHASGNGVSLSLMNQTAMQKGFAVNYEASQTGPPHAPTWSVRCLLNGTEYGTGTGTSQK 258 Query: 210 AAEQVAAAEVLKREG 224 A+++AA E +R G Sbjct: 259 KAKELAAQEAWERLG 273 >gi|322799941|gb|EFZ21067.1| hypothetical protein SINV_02537 [Solenopsis invicta] Length = 320 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP + + V E+ G G SK A Q AA LK Sbjct: 87 ESQGPMPNSLYLVHAELDGKTY-VGQGLSKPLARQNAAENALKAL 130 >gi|302854164|ref|XP_002958592.1| hypothetical protein VOLCADRAFT_99895 [Volvox carteri f. nagariensis] gi|300256053|gb|EFJ40329.1| hypothetical protein VOLCADRAFT_99895 [Volvox carteri f. nagariensis] Length = 2198 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G +T+ G +G +K+ A+++AA + LK GI Sbjct: 1800 DGESGSVGWTITAIYGGKDIGRGHAATKKDAKRLAAMDGLKALGI 1844 >gi|313226997|emb|CBY22143.1| unnamed protein product [Oikopleura dioica] Length = 551 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F V +E +G +G+ +K+ AE AA +LK Sbjct: 44 EFKVTLENNGE-IFEGIGSNKKKAEHRAAFNLLKTIK 79 >gi|313218350|emb|CBY41585.1| unnamed protein product [Oikopleura dioica] Length = 165 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F V +E +G +G+ +K+ AE AA +LK Sbjct: 44 EFKVTLENNGE-IFEGIGSNKKKAEHRAAFNLLKTIK 79 >gi|224074235|ref|XP_002304313.1| predicted protein [Populus trichocarpa] gi|222841745|gb|EEE79292.1| predicted protein [Populus trichocarpa] Length = 535 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 58/194 (29%), Gaps = 29/194 (14%) Query: 9 LEKR--IGY------AFANRS-------LLEKALTHSSISHSYQES----YERLEFLGDR 49 LE + +GY F + + LL A H S + + RL FLG Sbjct: 135 LEAKQALGYPLEPSDRFGDDNPAKQFDTLLYLAFQHPSCERTNARHVRSGHSRLCFLGQY 194 Query: 50 ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 +L L + + L R L+ + + L + I ++ K Sbjct: 195 VLELAFAEYFLQRYPRESPAPLRERVFGLIGKRNLPKWIKAASLHNLIFPYDNMDKLQRK 254 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 V ++ A+YL G+ + + F D + E + + Sbjct: 255 EREPPVKSVFWAVFGAIYLCFGMPEVYRVLFEV----------FEMDPEAEDCQPKLRRQ 304 Query: 170 GVTPEYKVTFRSGP 183 +Y G Sbjct: 305 FEDVDYVSVEFEGK 318 Score = 39.5 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 5/87 (5%) Query: 18 ANRSL---LEKALTHSS-ISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + + YERLE++G +I ++++ L A L Sbjct: 392 RNIELGLGLQLCFLHPSNYKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQ 451 Query: 73 VRFNSLVSAETCSQVARELDLASFIRV 99 + ++ + C + RE L +I Sbjct: 452 EKHRRVLMNKFCGRYLREKHLHKYITY 478 >gi|125561394|gb|EAZ06842.1| hypothetical protein OsI_29078 [Oryza sativa Indica Group] Length = 310 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + V +G G +K+ AEQ AA +K Sbjct: 157 YVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 191 >gi|115476208|ref|NP_001061700.1| Os08g0384100 [Oryza sativa Japonica Group] gi|75225116|sp|Q6YW64|DRB4_ORYSJ RecName: Full=Double-stranded RNA-binding protein 4; AltName: Full=dsRNA-binding protein 4 gi|40253891|dbj|BAD05825.1| unknown protein [Oryza sativa Japonica Group] gi|113623669|dbj|BAF23614.1| Os08g0384100 [Oryza sativa Japonica Group] Length = 312 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + V +G G +K+ AEQ AA +K Sbjct: 159 YVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 193 >gi|208690901|gb|ACI31226.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Trachypithecus francoisi] Length = 550 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 3/49 (6%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 V E ++ GP+ F ++ + G +K+ A+Q+AA Sbjct: 116 VNYEPCISGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKFA 161 >gi|208690899|gb|ACI31225.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Colobus guereza] Length = 550 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 3/49 (6%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 V E ++ GP+ F ++ + G +K+ A+Q+AA Sbjct: 116 VNYEPCISGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKFA 161 >gi|253723115|pdb|1STU|A Chain A, Double Stranded Rna Binding Domain Length = 68 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 6 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLVE 64 Query: 223 E 223 Sbjct: 65 L 65 >gi|307169043|gb|EFN61887.1| Double-stranded RNA-specific editase Adar [Camponotus floridanus] Length = 324 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 GP + + V E+ G G SK A Q AA LK Sbjct: 93 ETQGPMTNSLYLVHAELDGKTY-VGQGLSKPLARQNAAENALKAL 136 >gi|145485799|ref|XP_001428907.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124395996|emb|CAK61509.1| unnamed protein product [Paramecium tetraurelia] Length = 316 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 65/239 (27%), Gaps = 26/239 (10%) Query: 15 YAFANRSLLEKALT---H------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFD- 64 + F N ++L +ALT H + E +G IL S L Sbjct: 6 FRFQNINILAQALTNKIHELEFQSKKGIKYPFGNNEEFVVIGQMILEFYFSDYLIQRGYF 65 Query: 65 -----SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC----SFMTSIQ 115 + + + +V + L + ++ + I Sbjct: 66 ITLSRYPNKDSSIKKPSDIVQLRQRLLNEKNLADIALQYSLPNIVQIGNQTALKRNPKIL 125 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW------KQRALKSGKFRRDAKTELQEWAHAKF 169 A+ +++++AA Y D G ++ + + F Sbjct: 126 AESLKAILAAQYYDSGFDLEHVREITQPLFKELLDKGQNIPIAELKQNAKSSFLEFINNF 185 Query: 170 GVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227 + F V +E+ L +KR EQ+ E L + T Sbjct: 186 TDLKPKVSIEWKKDANSANVFKVQLELDSLLNITRTGINKRQTEQLVYHEALMKLKQKT 244 >gi|126338334|ref|XP_001374261.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 332 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 70/236 (29%), Gaps = 21/236 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48 R+ F+ LL+ A + S + L G Sbjct: 73 VQAFCHRLHENFS-LELLKTAFINRCYIESEETRRQKLGVDKEAVALNLRDNQELSEQGR 131 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ L + + S + + L S + VAR L + + + Sbjct: 132 AFSQTCLTQFLGDAYPSLPSEGIKAIVDFLTSEDIVCHVARNLAVEQLTLSAEFPVPQM- 190 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + V+ +L+ + F+ + L + L + + Sbjct: 191 -VLQQTFFAVIGALLQSSGPQKTSIFIRDFLITQMTGKELFEMWKVVNPMGLLVDELTKR 249 Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 250 NISAPEPRITRQSGSSTVLPLYFVGLYCEKKLIAEGPGETVLVAEEEAARVALRKL 305 >gi|113200881|gb|ABI32401.1| dicer [Gallus gallus] Length = 73 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 18/39 (46%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 D + V VE+ G +G+ S R A+ AA L+ Sbjct: 30 DGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLK 68 >gi|73963942|ref|XP_868518.1| PREDICTED: similar to dicer1 isoform 2 [Canis familiaris] Length = 63 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 18/39 (46%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 D + V VE+ G +G+ S R A+ AA L+ Sbjct: 16 DGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLK 54 >gi|225453150|ref|XP_002272597.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 671 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 21/198 (10%), Positives = 46/198 (23%), Gaps = 19/198 (9%) Query: 42 RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 +++ L +LG I + + K + V++ + + + + Sbjct: 229 KIDLLNKALLGKWIWRYAYEKDNLWKRV-IGVKYGQEGCGWRTKEACGSFGVGVWKEIMK 287 Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--------------- 146 + S + + + Sbjct: 288 EANWCWESIEFKVGKGTRFAPSQIDAFGWIRSQQKFLFLLGKPRGGRSSLWIGFKEGGGS 347 Query: 147 --ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + + + T G H P+F V + G Sbjct: 348 SLTDVFCLPEHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSPN 407 Query: 205 DCS-KRAAEQVAAAEVLK 221 S ++AAEQ A L+ Sbjct: 408 TFSHRKAAEQDVARLALE 425 Score = 42.2 bits (97), Expect = 0.048, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 17/34 (50%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P F + +G+ +K+ AEQ+AA V+ Sbjct: 474 PVFVSSLVFNGVTYTGDAGRNKKEAEQLAARTVI 507 >gi|330982803|gb|EGH80906.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 77 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213 +D KT LQE+ ++ P Y+V G H F V EI+ L ++G S+R AEQ Sbjct: 1 KDPKTRLQEFLQSRACELPRYEVVDIQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 60 >gi|297667845|ref|XP_002812174.1| PREDICTED: interferon-induced, double-stranded RNA-activated protein kinase [Pongo abelii] Length = 510 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 17/43 (39%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SG F ++ + G +K+ A+Q+AA + Sbjct: 123 SGVHGLEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKFAYLQI 165 Score = 39.9 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 13/28 (46%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I G + S Sbjct: 32 NSGPPHDRRFTFRVIIDGREFPEAEGRS 59 >gi|208690883|gb|ACI31217.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pongo pygmaeus pygmaeus] Length = 551 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 17/43 (39%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SG F ++ + G +K+ A+Q+AA + Sbjct: 123 SGVHGLEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKFAYLQI 165 Score = 39.9 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 13/28 (46%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I G + S Sbjct: 32 NSGPPHDRRFTFRVIIDGREFPEAEGRS 59 >gi|55730356|emb|CAH91900.1| hypothetical protein [Pongo abelii] Length = 512 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 17/43 (39%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SG F ++ + G +K+ A+Q+AA + Sbjct: 123 SGVHGLEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKFAYLQI 165 Score = 39.9 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 13/28 (46%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I G + S Sbjct: 32 NSGPPHDRRFTFRVIIDGREFPEAEGRS 59 >gi|168010927|ref|XP_001758155.1| predicted protein [Physcomitrella patens subsp. patens] gi|162690611|gb|EDQ76977.1| predicted protein [Physcomitrella patens subsp. patens] Length = 893 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 16/39 (41%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 +G F VE+ G +G S A+Q AA E Sbjct: 853 TGVGQRQIFRCQVEVGGRTLGRGSGPSWDDAKQQAAKEA 891 >gi|12597661|ref|NP_075066.1| 39S ribosomal protein L44, mitochondrial precursor [Homo sapiens] gi|51316917|sp|Q9H9J2|RM44_HUMAN RecName: Full=39S ribosomal protein L44, mitochondrial; Short=L44mt; Short=MRP-L44; Flags: Precursor gi|10434358|dbj|BAB14234.1| unnamed protein product [Homo sapiens] gi|15082305|gb|AAH12058.1| Mitochondrial ribosomal protein L44 [Homo sapiens] gi|48146703|emb|CAG33574.1| MRPL44 [Homo sapiens] gi|62822376|gb|AAY14925.1| unknown [Homo sapiens] gi|119591225|gb|EAW70819.1| mitochondrial ribosomal protein L44, isoform CRA_a [Homo sapiens] gi|119591226|gb|EAW70820.1| mitochondrial ribosomal protein L44, isoform CRA_a [Homo sapiens] gi|325463573|gb|ADZ15557.1| mitochondrial ribosomal protein L44 [synthetic construct] Length = 332 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 71/236 (30%), Gaps = 21/236 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48 R+ F+ LL+ A +S S +S + L G Sbjct: 72 IQAFGHRLQENFS-LDLLKTAFVNSCYIKSEEAKRQQLGIEKEAVLLNLKSNQELSEQGT 130 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ L + + + + L E VAR L + Sbjct: 131 SFSQTCLTQFLEDEYPDMPTEGIKNLVDFLTGEEVVCHVARNLAVEQLTLSEEFPVPP-- 188 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + + V+ +L+ + + F+ + L + L E + Sbjct: 189 AVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWKIINPMGLLVEELKKR 248 Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 249 NVSAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304 >gi|194898749|ref|XP_001978930.1| GG11001 [Drosophila erecta] gi|190650633|gb|EDV47888.1| GG11001 [Drosophila erecta] Length = 321 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 77/234 (32%), Gaps = 19/234 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRI 50 KR+G +F + S L++A T S + ++ L G RI Sbjct: 67 LFAFSKRLGESF-DLSELQRAFTEKSFAQREEDRRRQLGIEESDLQIPHNSDLVEKGQRI 125 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + L + L + L+S ET + V+ L I+ + Sbjct: 126 ARAYVEAFLQHQLPKVPNDGLQAIASFLLSTETLAHVSSHLGTKDLIQSTEYP--PSAES 183 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 M V+ +L ++ ++ F+ Q+ L ++ L++ + Sbjct: 184 MAKSLHAVIGALASSSGIEKAFLFVRDFICTQLNQKDLLEVWTPQEPIQVLEKICQERKL 243 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 E ++ G + + V + + +G + A + AA + L+ Sbjct: 244 GEAEPRLLGDCGKNTVLAAYQVGIYANRQLLGKGFGEDLKTATETAAIDALQSI 297 >gi|10120841|pdb|1EKZ|A Chain A, Nmr Structure Of The Complex Between The Third Dsrbd From Drosophila Staufen And A Rna Hairpin Length = 76 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 K +T +KV GP H F + G +G K+ +++ AA ++L Sbjct: 14 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLVE 72 Query: 223 E 223 Sbjct: 73 L 73 >gi|328707654|ref|XP_001951982.2| PREDICTED: microprocessor complex subunit DGCR8-like [Acyrthosiphon pisum] Length = 477 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 15/35 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + V + G+ G +K+ A+ AA L+ Sbjct: 257 YLCTVVLDGIQYGIGTGSTKKQAKVDAARATLQIL 291 >gi|301766360|ref|XP_002918599.1| PREDICTED: 39S ribosomal protein L44, mitochondrial-like [Ailuropoda melanoleuca] gi|281343634|gb|EFB19218.1| hypothetical protein PANDA_007087 [Ailuropoda melanoleuca] Length = 330 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 21/236 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48 R+ F+ LL+ A +S S + + L G Sbjct: 70 IQAFGHRLQETFS-LDLLKTAFVNSCYIKSEEAKRQNLGIEKEAVLLNLKDNQELSEQGT 128 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ L + + + + L E VAR L + + Sbjct: 129 SFSKTCLTQFLEDAYPDLPREGIKSLVDFLTGEEVVCHVARNLAVEQLTLSAEFPVLP-- 186 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + V+ +L+ + + F+ + L + L E + Sbjct: 187 PVLQRTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEIWKIINPMGLLVEELKKR 246 Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P F V + A+G + AE+ AA L++ Sbjct: 247 NISAPESRLTRQSGSTTALPVFFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 302 >gi|322694902|gb|EFY86720.1| abhydrolase domain-containing protein [Metarhizium acridum CQMa 102] Length = 333 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 1/104 (0%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 + L H +S + SYERLE+LGD L L+ S+L++ F S G S Sbjct: 60 KILDPELEATVFRHPGLSDPLR-SYERLEWLGDAYLELIASSLIYQTFTSTPTGRCSQLR 118 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 L+ +T +Q RE L S + SDL+ D+ S + Sbjct: 119 EILIRNKTLAQYFREYGLESKAHLPSDLKTDISRSRGSSSDKDI 162 >gi|242047516|ref|XP_002461504.1| hypothetical protein SORBIDRAFT_02g003680 [Sorghum bicolor] gi|241924881|gb|EER98025.1| hypothetical protein SORBIDRAFT_02g003680 [Sorghum bicolor] Length = 942 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 183 PDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225 P + +++ GL+ A G K+ AEQ AA L + GI Sbjct: 39 PQTRSVYRCALDLPGLSVATPGTFLRKKDAEQAAAQIALDKLGI 82 >gi|328726248|ref|XP_001948877.2| PREDICTED: double-stranded RNA-specific editase 1-like [Acyrthosiphon pisum] Length = 583 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T+ V +SG G SK+ A+++A LK Sbjct: 148 TISVIVSGNKY-IGYGKSKKEAKEIACRNALKSL 180 >gi|45686033|ref|YP_003796.1| RNase III [Ambystoma tigrinum virus] gi|37722457|gb|AAP33202.1| RNase III [Ambystoma tigrinum stebbensi virus] Length = 373 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 71/217 (32%), Gaps = 17/217 (7%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVRF 75 R L K T +++ ++YE LE +GD + + F + ++ Sbjct: 25 RDLWNKVFTPKNVN--PDDNYEALEIVGDGVASYFFPSYFLKRFPQLNNPKGVKTVARLK 82 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 S ++ S +A L FIR S S S+ D E+ + A+ E + Sbjct: 83 IYYGSKKSFSSIADSLGFWKFIR--SGPVPVNPSTRESLLEDTFEAFLGAVCTAVDDEYS 140 Query: 136 GT-----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 K + + + + DH T Sbjct: 141 IDGLGAVVAYKIMADIFDDMDISLEYTALFDTVTRLKELMDVKKDVLGGDAVYDHRGDTT 200 Query: 191 VVVEISGLAPAQGMDCSKRA-AEQVA--AAEVLKREG 224 V + + G + KR A++ A A ++L+REG Sbjct: 201 V-ITLKGRVIGKATGAIKRDRAKEAAGQALDLLRREG 236 >gi|170044459|ref|XP_001849864.1| 39S ribosomal protein L44 [Culex quinquefasciatus] gi|167867604|gb|EDS30987.1| 39S ribosomal protein L44 [Culex quinquefasciatus] Length = 327 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 75/242 (30%), Gaps = 35/242 (14%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRI 50 +R+ F + LL++A TH S ++ L LG + Sbjct: 65 LFAFGRRLSEQF-DAKLLQQAFTHRSFIAQEEQKQAEVGIVQPELGLSDNGELITLGGSL 123 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + + L + + L S + + V+ L I ++ Sbjct: 124 INQYVEAFLLTALPKLPQEGIGAIVGHLTSDASLAHVSSHLGTKDIILAATFP------V 177 Query: 111 MTSIQADVVESLIAALYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 ++ AD +++L+ AL G E F+ Q+ + L+E+ Sbjct: 178 DQTLLADTIKALVGALQRSSGDERAFLFVRDFICTQLNQQDVNEYWTIERPLDLLKEYCQ 237 Query: 167 AKFGVTPEYKVTFRSGPD-----HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 K PE + G + H+ V + + G A AA + L+ Sbjct: 238 EKKLGEPEPRSIGLVGKNTLLAAHN----VAIYCNKQFVGSGFGEDVDTAIDEAARDALR 293 Query: 222 RE 223 + Sbjct: 294 QL 295 >gi|157107677|ref|XP_001649886.1| ATP-dependent RNA helicase [Aedes aegypti] gi|108879498|gb|EAT43723.1| ATP-dependent RNA helicase [Aedes aegypti] Length = 1131 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 +GP + RF V + A G +K+ AE+ AA + Sbjct: 20 FEVRPTGPKNRQRFLCEVRVPSEAYVGAGNSTNKKDAERNAARD 63 >gi|219689078|ref|NP_001137272.1| interferon-induced, double-stranded RNA-activated protein kinase [Equus caballus] gi|61889230|gb|AAX47275.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Equus caballus] Length = 540 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 14/37 (37%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF +I +K+ A+Q+AA + Sbjct: 127 KRFRCKYKIGWKEYPIASGSTKQEAKQLAAKLAYDQI 163 Score = 34.9 bits (78), Expect = 9.7, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 18/43 (41%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 K V +++ ++GP HD FT V I+G + Sbjct: 15 NKYRQKHNVVLDFRELSKTGPPHDLTFTFRVIINGREFPEAEG 57 >gi|221113037|ref|XP_002167363.1| PREDICTED: similar to neuron-specific staufen [Hydra magnipapillata] Length = 493 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 2/158 (1%) Query: 69 GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128 E +V N + T + ++ + ++ V M A + + L Sbjct: 204 YEKAVLHNFQIHFTTIHESGPAHLRFFHVKCEVNDKETVGEAMGKKNAKNIAAEKMLKIL 263 Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDP 187 + +K K++ K + + T L + + Y + G Sbjct: 264 EEMNLPIPPKKEKPKKKKKEKKISTKTNPVTYLTQLIQLRKEPPVTYTMKAIPGDQSGAL 323 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F + I+ + G SKR A+ AA +LK GI Sbjct: 324 LFQIEAAITNFK-SVGCGHSKREAKANAAMNLLKSLGI 360 >gi|331250704|ref|XP_003337958.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309316948|gb|EFP93539.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1411 Score = 44.9 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 84/258 (32%), Gaps = 58/258 (22%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 L+ LE++IGY F + LLE E+LGD ++ + I + F Sbjct: 1089 LKCQALEEKIGYVFKEK-LLE-------------------EWLGDAVVDMWIVQHAYKRF 1128 Query: 64 DSAKEGELSVRFNSLVSAET-CSQVARELDLASFIRVSSD-------------------- 102 D+A EL++ LVS + ++L L I S+ Sbjct: 1129 DNATAEELTLARAKLVSNGSLGFLAIKKLGLHKVIMHKSESFEQACVEAIKAIEPFTSIE 1188 Query: 103 ------LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS---GKF 153 V I DV+E+++ A+++D ++ + + Sbjct: 1189 EFFSNLENLFVVFDPPKILNDVLEAIVGAVFIDSRFDLPTVYRTIDKIFEDVTPGLSRIV 1248 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVT-----FRSGPDHDPR--FTVVVEISGLAPAQGM-D 205 RD + + T G D DP +E+ G A G Sbjct: 1249 ARDPLSTMLRLRDQYQCAELRRVSTTIKEPNPEGEDKDPISVRVCRIELHGQEIASGRHA 1308 Query: 206 CSKRAAEQVAAAEVLKRE 223 S AEQ A+ LK Sbjct: 1309 SSASVAEQRASLAALKVL 1326 >gi|212532231|ref|XP_002146272.1| 60S ribosomal protein L3 [Penicillium marneffei ATCC 18224] gi|210071636|gb|EEA25725.1| 60S ribosomal protein L3 [Penicillium marneffei ATCC 18224] Length = 404 Score = 44.9 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 48/161 (29%), Gaps = 4/161 (2%) Query: 65 SAKEGELSVRFNSLVSAE-TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +S+V + R + D+ + V++L+ Sbjct: 207 RPNTHWRKSIASSVVHGDIFGDPDLRTKNPKYVESRLPDIDSIPGVTAEKAASTFVQALV 266 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL G A F ++ R L K +L H + P K+ + Sbjct: 267 GGIYLHAGRPAAKRFFKEHIISRHLDMTKLFSFTQPARDLANLCHRENIEPPVAKIISET 326 Query: 182 GPD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 G +P F V V +G S A AA LK Sbjct: 327 GRHSRNPVFNVGVFSGKDKLGEGSGASLIEARTRAAVAALK 367 >gi|198437680|ref|XP_002131410.1| PREDICTED: similar to mitochondrial ribosomal protein L44 [Ciona intestinalis] Length = 340 Score = 44.9 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 72/226 (31%), Gaps = 15/226 (6%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHF 63 + + R+ N LL ALT + E Y +L G + + +S + F Sbjct: 85 LTAFKNRLDIEVPN-ELLVSALTEPLFNEPSTEDTGYSKLLKDGSKFVEEFVSHYVKEAF 143 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S + L+ + +A L ++++ + A+ + + I Sbjct: 144 PFLTSEGRSSICDFLLLDSNIAYLALNLGYNDLLQLT------GLRSSEKVLAESLVASI 197 Query: 124 AALYLDGGIEVAGTFVDKYWKQR-----ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 A+ L G A F+ + + + + L E P+ ++ Sbjct: 198 EAINLSEGPVAAAKFILNFLVPQLVGKDIIDDIWKPSNPMALLTESFKISGKPAPQARLI 257 Query: 179 FRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + G P + V + A+ S AE AA LK Sbjct: 258 QQCGVNTVTPIYYVGLFSGKDLIAKSGAESIVLAETDAAKLALKHI 303 >gi|170577089|ref|XP_001893878.1| hypothetical protein Bm1_12040 [Brugia malayi] gi|158599853|gb|EDP37292.1| hypothetical protein Bm1_12040 [Brugia malayi] Length = 381 Score = 44.9 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 83/225 (36%), Gaps = 26/225 (11%) Query: 18 ANRSLLEKALTHSSI-------------------SHSYQESYERLEFLGDRILGLLISTL 58 ++ +L +ALT SS S+ +E ++L LG+ +L Sbjct: 59 TDKDVLIRALTDSSFYQRADIAEESSNAQPSKQESYEIKEHNKQLIQLGNELLWKSTCAY 118 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118 L +A E + L + E + +A L + + IR + +V + Sbjct: 119 LRYGLLNAPEELIISLALKLTADEQIANLATYLGINNLIRTAEFPPSNV------SLCNA 172 Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++LIAAL + I + V ++ + L+ + ++ G+ E ++ Sbjct: 173 FKALIAALPYERAIALIRNVVMAQLVDLDIEEVFPLAEPLAVLRCFMSSRSGMEIEPRLL 232 Query: 179 FRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +G +P F + + QG + A +AA + L R Sbjct: 233 RSAGEISAEPVFIAGIYANKKLIGQGPGETISIAVDMAAMDALMR 277 >gi|328781456|ref|XP_623721.3| PREDICTED: 39S ribosomal protein L44, mitochondrial [Apis mellifera] Length = 313 Score = 44.9 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 70/234 (29%), Gaps = 19/234 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS---------------YQESYERLEFLGDRI 50 +R+ F N L +A H S +S E G I Sbjct: 63 IYAFNERLSEKF-NTEKLNQAFIHKSYIVEEVKKQKEIGIKEPLFNIQSNEEFIKKGKEI 121 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 +I L + S E + + L+S E + + + + + Sbjct: 122 TSAVIKKYLNQNLSSLPENGIIAFHDYLMSQELLATASLHIGTKD--IILTGEHPVSQET 179 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 + +V +L ++ ++ F+ + L L + + Sbjct: 180 LAQTFLALVGALAESVDVNHAGIFVRDFLIAGLASKDLTEIWCPTKPFETLTDMISMERK 239 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E ++ ++G + + + + + G + A+ VAA +L + Sbjct: 240 VIIEARLIGQAGKNTILSVYHIGIYANKEYLGSGFGQTIAEAKDVAAINILSQM 293 >gi|45187851|ref|NP_984074.1| ADL023Wp [Ashbya gossypii ATCC 10895] gi|44982635|gb|AAS51898.1| ADL023Wp [Ashbya gossypii ATCC 10895] Length = 228 Score = 44.9 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55 + G + +L + LTH S ++S + E+L LG ++L Sbjct: 63 DKYGLQIPD-DILLQCLTHKSFANSAKPYNEKLSLLGGQLLKWYA 106 >gi|242069681|ref|XP_002450117.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor] gi|241935960|gb|EES09105.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor] Length = 292 Score = 44.9 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 5/58 (8%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + SGP F VEI G+ +K+ AE AA L Sbjct: 100 YAQKMNYAIPSYICTKQASGP-----FICSVEIGGILYIGAAARTKKGAEIKAARTAL 152 >gi|125586950|gb|EAZ27614.1| hypothetical protein OsJ_11558 [Oryza sativa Japonica Group] Length = 258 Score = 44.9 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 64/204 (31%), Gaps = 25/204 (12%) Query: 42 RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101 RLEFLGD IL L + ++ + L+ ++ V+ + A + L I SS Sbjct: 46 RLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSS 105 Query: 102 DLRKDVCSFM---------------------TSIQADVVESLIAALYLDGGIEVAGTFVD 140 S+ + DV+ES+ A+YLD + + Sbjct: 106 SELHRKMSYYLEEFGQSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRS 165 Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 L + + + + ++ D V+ Sbjct: 166 MKRLLEPLATPETIEPDPVKGLQ---EFCDRRSFKITYEKNHVDGVSSVIARVKAGETTY 222 Query: 201 -AQGMDCSKRAAEQVAAAEVLKRE 223 A K A+++A+ VLK Sbjct: 223 SATKSGPCKLVAKKLASKAVLKDL 246 >gi|242083576|ref|XP_002442213.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor] gi|241942906|gb|EES16051.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor] Length = 198 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 2/100 (2%) Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 L A + + + K G++ T + + Sbjct: 85 YYKLKDAEAAAAEVALDLLPPIPPQEYTIPSLSYKNFIQEIAQKEGISLPVYNTVPTNKE 144 Query: 185 HDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223 + + V+I G +G SK+ AE AA Sbjct: 145 NSTAYKSSVQIKGE-IFEGEPGTSKKQAEMNAAKIAYHHL 183 >gi|226479846|emb|CAX73219.1| dihydrouridine synthase 2-like, SMM1 homolog [Schistosoma japonicum] Length = 511 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 4/78 (5%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCS 207 K L E +P+Y+ F V + G + Sbjct: 424 FWPDHGTSPKQILSEHCKLLKWDSPKYETVENR---EKRSFFSAVLVDGRRYRNTSSCKT 480 Query: 208 KRAAEQVAAAEVLKREGI 225 K+ AEQ AA L+ G+ Sbjct: 481 KKYAEQAAALVCLQVLGL 498 >gi|76155978|gb|AAX27226.2| SJCHGC08917 protein [Schistosoma japonicum] Length = 256 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 4/78 (5%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCS 207 K L E +P+Y+ F V + G + Sbjct: 169 FWPDHGTSPKQILSEHCKLLKWDSPKYETVENR---EKRSFFSAVLVDGRRYRNTSSCKT 225 Query: 208 KRAAEQVAAAEVLKREGI 225 K+ AEQ AA L+ G+ Sbjct: 226 KKYAEQAAALVCLQVLGL 243 >gi|198423925|ref|XP_002127604.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Ciona intestinalis] Length = 1243 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 9/78 (11%), Positives = 24/78 (30%), Gaps = 5/78 (6%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-----MD 205 ++ + + + GPDH+ F + + + Sbjct: 182 HGNWTVENSKGRLHQFFQQNKINPEYKYSQVGPDHNRSFISELVVYIKKLGRSLHAREHG 241 Query: 206 CSKRAAEQVAAAEVLKRE 223 +K+ A Q A ++++ Sbjct: 242 SNKKNASQSCALSIIRQL 259 Score = 42.6 bits (98), Expect = 0.038, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 1/50 (2%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 SG P+F V + G+ G +K+ A+ AA + Sbjct: 15 QKMTPSYDIQPSGSKARPKFMCEVRVDGIPYVGIGNSTNKKDAQANAAYD 64 >gi|190346940|gb|EDK39128.2| hypothetical protein PGUG_03225 [Meyerozyma guilliermondii ATCC 6260] Length = 230 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 45/114 (39%), Gaps = 3/114 (2%) Query: 2 SALRYSTLEKRI--GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 +A +++ + YA ++ L + LTH S + + E+L +G ++L L + Sbjct: 56 NADNLRPIKQFLDDKYAISD-ELALQVLTHKSFGNGIKPYNEKLSAMGSKVLNLYCAKYT 114 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 + +A E + + ++ + ++A L L F + + Sbjct: 115 TDTPTTANENAIDGKNVDVLGSPMAKELAGRLALGLFAKSHKLNQVLFWKSYNH 168 >gi|195566706|ref|XP_002106918.1| GD17163 [Drosophila simulans] gi|194204313|gb|EDX17889.1| GD17163 [Drosophila simulans] Length = 460 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 19/173 (10%), Positives = 42/173 (24%), Gaps = 6/173 (3%) Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 + + +E RF + + ++ + + + Sbjct: 278 HNAKYCVQSILREMQETPRGKRFLQCQTLQQICEIWELGEYCRRKQRELRTMGNSGRAEV 337 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 + + + ++ + KT+L A Sbjct: 338 KPPEALAKRQKLDEAAIAIAAEFDGIICRHMPFLRSTYPSDNQLPKTQLYVHAVKAGKSP 397 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224 P Y+ D F + + + +K+ AEQ AA L G Sbjct: 398 PAYETQQC-----DKLFRSICTYDDQRFSSSYWEKNKKQAEQGAALVALLHLG 445 >gi|50511725|gb|AAT77415.1| dsRNA-binding protein LH [Brassica rapa subsp. chinensis] Length = 274 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221 + ++ + T + GP H P V ++ + +++AAEQ AA L+ Sbjct: 21 QEYAQRYKLPTPLYETIKEGPSHKPLIQSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALQ 80 Query: 222 RE 223 Sbjct: 81 EL 82 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 25/72 (34%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K LQE+A P Y+ P+FT VEI G+ +K+ A Sbjct: 97 HEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEA 156 Query: 212 EQVAAAEVLKRE 223 E A L Sbjct: 157 EISAGRTALIAI 168 >gi|311223109|gb|ADP76633.1| nonstructural protein NSP3 [Human rotavirus C] gi|311223113|gb|ADP76635.1| nonstructural protein NSP3 [Human rotavirus C] Length = 402 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 D +T +++ A A G SK+ A+++AA ++L + GI Sbjct: 362 DGSITYTCYMKLE-SAEASGSGRSKKEAKRIAAYDILDQLGI 402 >gi|149699899|ref|XP_001499859.1| PREDICTED: adenosine deaminase domain containing 2 [Equus caballus] Length = 619 Score = 44.5 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 21/71 (29%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 + T + G F+V E+ G+ G SK Sbjct: 143 WPWLGPGATWACCLPFVCPLCKMGSRGPISEGLGCCSSFSVCAEVDGVVCPAGTANSKLE 202 Query: 211 AEQVAAAEVLK 221 A+Q AA L+ Sbjct: 203 AKQQAARSALR 213 >gi|31324225|gb|AAP47192.1| Mrpl15p [Eremothecium gossypii] Length = 165 Score = 44.5 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55 + G + +L + LTH S ++S + E+L LG ++L Sbjct: 1 KYGLQIPD-DILLQCLTHKSFANSAKPYNEKLSLLGGQLLKWYA 43 >gi|195150825|ref|XP_002016351.1| GL10536 [Drosophila persimilis] gi|194110198|gb|EDW32241.1| GL10536 [Drosophila persimilis] Length = 638 Score = 44.5 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + T+L + + P +++ ++G + F + V SG A+G SK+ A+ Sbjct: 347 ENPITKLIQLQQTRKEKEPIFELIAKNGNEASRRREFVMEVSASGTT-ARGTGNSKKLAK 405 Query: 213 QVAAAEVLKRE 223 + AA +L+ Sbjct: 406 RSAAQALLELL 416 Score = 42.6 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV--- 219 K +T +KV GP H F + G +G K+ +++ +A ++ Sbjct: 221 HEIGIKRNMTVHFKVLREDGPAHMKNFITACVV-GSIVTEGEGNGKKLSKKRSAEKMLTE 279 Query: 220 LKRE 223 L++ Sbjct: 280 LQKL 283 >gi|225678617|gb|EEH16901.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03] Length = 314 Score = 44.5 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 11/134 (8%) Query: 23 LEKA-LTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 L+ A TH ++ +++YERLE LGD + + + L+++ F + G LS Sbjct: 156 LQTAIFTHEGVNDPTNTTTTTASTEKNYERLELLGDAYIEIFATRLVWDTFPRLRAGRLS 215 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 LV ET ++ A L ++V++++R+ T ++ D+ E+ +AA+ L Sbjct: 216 QIREMLVKNETLAEYATRYGLDRRLQVAAEIRRQ-AKTWTKVRGDLFEAYVAAVILSHPK 274 Query: 133 EVAGTFVDKYWKQR 146 + + Sbjct: 275 RGVEMVEEWLTQLW 288 >gi|157118092|ref|XP_001659004.1| mitochondrial ribosomal protein, L44, putative [Aedes aegypti] gi|108875856|gb|EAT40081.1| mitochondrial ribosomal protein, L44, putative [Aedes aegypti] Length = 327 Score = 44.5 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 77/237 (32%), Gaps = 35/237 (14%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQ---------------ESYERLEFLGDRILGLLI 55 KR+ F + ++L++A TH S + + L LG+R++ + Sbjct: 70 KRLSEQF-DTAVLQQAFTHRSFIAQEEQRQVDVGIEKPELGLKDNRELVQLGERLIEEYV 128 Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115 + + + L S E + V++ L I + S+ Sbjct: 129 EAFVLTALPRLPNEGIRSIVSGLTSQEKLANVSKHLGTKDIILAAEFP------VTDSLL 182 Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWK----QRALKSGKFRRDAKTELQEWAHAKFGV 171 AD +++ AL G E A FV + Q+ + L+E+ K Sbjct: 183 ADTFCAVVGALQKSSGDERAFLFVRDFVCTQLSQQDVNDYWTIESPLDLLREYCKEKKLG 242 Query: 172 TPEYKVTFRSGPD-----HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE + G + H V + + G A AA + L++ Sbjct: 243 EPEPRSIGLVGKNTLLAAH----RVGIYCNKQFVGSGYGEDIDTAIDEAARDCLRQL 295 >gi|27262833|emb|CAD59425.1| dsRNA-binding protein [Brassica oleracea var. botrytis] Length = 283 Score = 44.5 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221 + ++ + T + GP H P F V ++ + +++AAEQ AA L+ Sbjct: 21 QEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNYVRYDSLPGFFNRKAAEQSAAEVALQ 80 Query: 222 RE 223 Sbjct: 81 GL 82 Score = 39.9 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 25/72 (34%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 K LQE+A P Y+ P+FT VEI G+ +K+ A Sbjct: 97 HEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEA 156 Query: 212 EQVAAAEVLKRE 223 E + L Sbjct: 157 EISSGRTALIAI 168 >gi|189241606|ref|XP_972567.2| PREDICTED: similar to adenosine deaminase [Tribolium castaneum] gi|270000868|gb|EEZ97315.1| hypothetical protein TcasGA2_TC011126 [Tribolium castaneum] Length = 850 Score = 44.5 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 L++ ++ + + GP H P F + +++G G SK+ A+ VL Sbjct: 184 LKKNKLEYLKPLLKFTLIEQIGPSHAPTFKMAAKVNGKLYF-GNGGSKQKAQTSVTQSVL 242 Query: 221 KREG 224 + Sbjct: 243 QSLN 246 Score = 42.6 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 +Y++ ++GPDH P F + +++ G+ SK A+ Sbjct: 270 YVENTYSLLKYRLVEQTGPDHKPTFKMAAKVNEKIY-YGVGGSKVKAQMN 318 Score = 41.8 bits (96), Expect = 0.064, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 GP H P F + V+++ G SK+ A Sbjct: 114 VEEIGPSHAPTFKMAVKVNEKIY-YGKGGSKQKA 146 >gi|326480181|gb|EGE04191.1| hypothetical protein TEQG_03222 [Trichophyton equinum CBS 127.97] Length = 604 Score = 44.5 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 3/124 (2%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 MS+ +E +GY F ++ LL KALT + S + RL LG ++ L+ + Sbjct: 1 MSSKGSIRPVEDIVGYKFKSKPLLLKALTAAGSELSDYDGNRRLAQLGTALVEFLLVYIG 60 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + G + S E C+ V + + S+I SS + + ++ Sbjct: 61 YRQNV--PRGYTTRFKIRFGSNEHCAAVIKRTGIDSYISYSSKPGVKAPTVLAKSVNVII 118 Query: 120 ESLI 123 + Sbjct: 119 AATF 122 >gi|159163044|pdb|1T4L|B Chain B, Solution Structure Of Double-Stranded Rna Binding Domain Of S. Cerevisiae Rnase Iii (Rnt1p) In Complex With The 5' Terminal Rna Hairpin Of Snr47 Precursor Length = 90 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%) Query: 186 DPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221 DP V + G G+ + + A AA L+ Sbjct: 34 DPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 70 >gi|51247554|pdb|1T4N|A Chain A, Solution Structure Of Rnt1p Dsrbd Length = 94 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%) Query: 186 DPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221 DP V + G G+ + + A AA L+ Sbjct: 35 DPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 71 >gi|50513704|pdb|1T4O|A Chain A, Crystal Structure Of Rnt1p Dsrbd gi|50513705|pdb|1T4O|B Chain B, Crystal Structure Of Rnt1p Dsrbd Length = 117 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%) Query: 186 DPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221 DP V + G G+ + + A AA L+ Sbjct: 37 DPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 73 >gi|10436325|dbj|BAB14802.1| unnamed protein product [Homo sapiens] Length = 332 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 72/236 (30%), Gaps = 21/236 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48 R+ F+ LL+ A +S S +S + L G Sbjct: 72 IQAFGHRLQENFS-LDLLKTAFVNSCYIKSEEAKRQQLGIEKEAVLLNLKSNQELSEQGT 130 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ L + + + + L E VAR L + Sbjct: 131 SFSQTCLTQFLEDEYPDMPTEGIKNLVDFLTGEEVVCHVARNLAVEQLTLSEEFPVPP-- 188 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + + V+ +L+ + + F+ + L + + L E + Sbjct: 189 AVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMRKIINPMGLLVEELKKR 248 Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 249 NVSAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304 >gi|260817370|ref|XP_002603560.1| hypothetical protein BRAFLDRAFT_79093 [Branchiostoma floridae] gi|229288879|gb|EEN59571.1| hypothetical protein BRAFLDRAFT_79093 [Branchiostoma floridae] Length = 1211 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 9/21 (42%), Positives = 12/21 (57%) Query: 205 DCSKRAAEQVAAAEVLKREGI 225 SK+ AEQ AA VL+ + Sbjct: 855 AKSKKEAEQNAAKAVLEMLKV 875 Score = 38.4 bits (87), Expect = 0.88, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 2/40 (5%) Query: 186 DPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + F V G + SK+ +EQ AA V+ Sbjct: 1089 EKTFLSTVRFETAGAFLTTEVAPSKKDSEQNAAKSVIDLL 1128 Score = 34.9 bits (78), Expect = 7.7, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Query: 186 DPRFTVVVEISGL-APAQG-MDCSKRAAEQVAAAE 218 + F+ V ++G QG +K+ AEQ AA + Sbjct: 475 EQGFSAQVRMTGRAEFPQGDTSSTKKEAEQSAAEK 509 >gi|260834651|ref|XP_002612323.1| hypothetical protein BRAFLDRAFT_265495 [Branchiostoma floridae] gi|229297700|gb|EEN68332.1| hypothetical protein BRAFLDRAFT_265495 [Branchiostoma floridae] Length = 444 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 4/87 (4%) Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 + K KT L W+ ++ P Y+ + D +F VV + Sbjct: 356 YTMHVEYIRKEYPSAVSPKTILLNWSRTEYLPQPTYETVKQ---GSDTKFNSVVTVGDKR 412 Query: 200 PAQG-MDCSKRAAEQVAAAEVLKREGI 225 A +K+ AEQ AA+ L+ G+ Sbjct: 413 YASSFWHKAKKLAEQAAASVCLRTLGL 439 >gi|62859019|ref|NP_001016230.1| dihydrouridine synthase 2-like, SMM1 homolog [Xenopus (Silurana) tropicalis] gi|89268176|emb|CAJ82133.1| similar to dus2l (dihydrouridine synthase 2-like) [Xenopus (Silurana) tropicalis] Length = 495 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 4/81 (4%) Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-M 204 ++ + K L EW + P Y R D F VV++ + A Sbjct: 356 FDKRNYMSQITPKMLLLEWCRKRKLPQPVYHTVQR---PVDKFFQSVVKVDEMQYASTLW 412 Query: 205 DCSKRAAEQVAAAEVLKREGI 225 D SK+ AEQ AA L G+ Sbjct: 413 DKSKKLAEQSAAIVCLHTLGL 433 >gi|294655348|ref|XP_457483.2| DEHA2B12166p [Debaryomyces hansenii CBS767] gi|199429888|emb|CAG85487.2| DEHA2B12166p [Debaryomyces hansenii] Length = 611 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 6/43 (13%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEV------LKREGI 225 F V + ++ + +D +K+AA Q AA L + G+ Sbjct: 567 FQVSILVNDIVIGTSVDSNKKAASQRAAMNALSNKSLLNQLGV 609 Score = 42.6 bits (98), Expect = 0.038, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 68/227 (29%), Gaps = 26/227 (11%) Query: 17 FANRSLLEKALTHSSISHS------------YQESYERLEFLGDRILGLLISTLLFNHFD 64 +N SLL K LT S + +L G R+L + +L Sbjct: 151 ISNESLLNKILTDKSFRQPADFLESNDANDFNRSHNAKLGLRGKRLLEFALIEILDEKLP 210 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 E +L LVS +++A +LA + ++ + + + + Sbjct: 211 DIHEDDLYYLQFKLVSTSILTKLAFGYNLADNYKFHFSKEMNLDDKLAKLSNIFLAYIGG 270 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD----------AKTELQEWAHAKFGVTPE 174 ++ K ++ + + L + + + + Sbjct: 271 LALDGYSFAEIKLWIAKLYEPIIQDFNENNDTLKPLNKLALIELSFLFKQVTNMYYIPQQ 330 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK--RAAEQVAAAEV 219 + DP + V + I+G G S A+ AA++ Sbjct: 331 QTTLQFDTLETDP-YVVKLSINGQTLGIGT-SSIGVEEAKVRAASDA 375 >gi|294993977|ref|ZP_06799668.1| ribonuclease III [Mycobacterium tuberculosis 210] Length = 188 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 4/159 (2%) Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCS 109 + I+ LF+ EG+L+ S+V+ + + VAR L L + + + Sbjct: 1 MTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGA 60 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAK 168 +SI AD +ESL+ A+YL G+E A + + + + + A Sbjct: 61 DKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAA 120 Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 G+ + +GPDHD FT VV + G+ S Sbjct: 121 RGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRS 159 >gi|242209154|ref|XP_002470425.1| predicted protein [Postia placenta Mad-698-R] gi|220730458|gb|EED84314.1| predicted protein [Postia placenta Mad-698-R] Length = 1379 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 39/98 (39%) Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 Y E+A +F + + + D + +L + + G ++SGP H Sbjct: 1274 SYHTKQTEMAESFRTLLHNVQNDSAAEIHSDWRMQLNNYLQSNGGSRSLTWEVYQSGPQH 1333 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P +T V I G+ + S+ A ++ AA + L Sbjct: 1334 QPSWTAVAYIRGIEYGKSTGTSQGAVKEEAARQTLAAL 1371 >gi|309360573|emb|CAP31071.2| hypothetical protein CBG_12024 [Caenorhabditis briggsae AF16] Length = 806 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 2/95 (2%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 E++ +K Q + ++ + + E + P + SG DH F Sbjct: 703 EMSTKQRNKMNTQNNVPIDLSTKNPISLVMELCAKRRWNAPSFTC-EESGADHSKMFIWT 761 Query: 193 VEISGLAPAQGMD-CSKRAAEQVAAAEVLKREGIW 226 V I+ + K+ + VA L+ G+ Sbjct: 762 VVINNVQYRPMCGSKQKKEGKAVACQVALQSLGVL 796 >gi|145523894|ref|XP_001447780.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124415302|emb|CAK80383.1| unnamed protein product [Paramecium tetraurelia] Length = 357 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 71/234 (30%), Gaps = 25/234 (10%) Query: 15 YAFANRSLLEKALT---H------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 ++F N + L +ALT H + + E +G IL S L Sbjct: 48 FSFQNTNTLAQALTNKIHELEYQSKKGTKYPFGNNEDFVGIGQMILEFFFSDYLIQR-GY 106 Query: 66 AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125 + + + LV R L + ++ + ++ + + Sbjct: 107 PNKETQIKKSSDLVLLRQRLLSERNLADIALSYKIDNIVQVGNQINLKKNPKILAETLKS 166 Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG-----------KFRRDAKTELQEWAHAKFG--VT 172 + + + + + +++ K+ E+ + Sbjct: 167 IIAAQYYDSGYDLDHLREVVQPILKQVLDKGQAVPLVELKQNPKSAFLEFVNGCTNLKPK 226 Query: 173 PEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + S + +P + V +E++ L + +KR EQ+ + LKR Sbjct: 227 VSVEWKKDSSQNGNPINIYQVQLELNNLLLIKREGVNKRNTEQLVYRDALKRLK 280 >gi|268560900|ref|XP_002646317.1| Hypothetical protein CBG12024 [Caenorhabditis briggsae] Length = 762 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 2/95 (2%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 E++ +K Q + ++ + + E + P + SG DH F Sbjct: 659 EMSTKQRNKMNTQNNVPIDLSTKNPISLVMELCAKRRWNAPSFTC-EESGADHSKMFIWT 717 Query: 193 VEISGLAPAQGMD-CSKRAAEQVAAAEVLKREGIW 226 V I+ + K+ + VA L+ G+ Sbjct: 718 VVINNVQYRPMCGSKQKKEGKAVACQVALQSLGVL 752 >gi|81022920|ref|YP_392486.1| nonstructural protein 3 [Rotavirus C] gi|81975426|sp|Q9PY95|NSP3_ROTHC RecName: Full=Non-structural protein 3; Short=NSP3; Contains: RecName: Full=p38; Contains: RecName: Full=p8 gi|5734508|emb|CAB52751.1| nonstructural protein 3 [Human rotavirus (group C / strain Bristol)] Length = 402 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 D +T +++ A A G SK+ A+++AA ++L + GI Sbjct: 362 DGSITYTCYMKLE-SAEAIGSGRSKKEAKRIAAYDILDQLGI 402 >gi|302783689|ref|XP_002973617.1| hypothetical protein SELMODRAFT_173599 [Selaginella moellendorffii] gi|300158655|gb|EFJ25277.1| hypothetical protein SELMODRAFT_173599 [Selaginella moellendorffii] Length = 807 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 18/36 (50%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F V V +G A+G+ + R A A+ + L+ Sbjct: 617 QFCVEVTFNGEKIARGVGRTSRDARSRASEDALRLL 652 >gi|73992223|ref|XP_867068.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen homolog isoform 3 [Canis familiaris] Length = 257 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + V++ A+G +K+ A++ AA +L+ G Sbjct: 1 MQVKVGNHT-AEGAGTNKKVAKRNAAENMLEILG 33 >gi|332246796|ref|XP_003272538.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform 3 [Nomascus leucogenys] Length = 671 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 31/125 (24%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 F + + + + + + + R Sbjct: 130 FREDQPPEKVFKYRAPGGEELKPMCLWQVGVLRAFLLRTGWCGLWGGDLDLGPDTTWANR 189 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + E V + S F+V VE+ G+ G SK A+Q A Sbjct: 190 LPFLLICEMESCIPVVEELAEDVVESAMGPCFPFSVSVELDGVVCPAGTANSKTEAKQQA 249 Query: 216 AAEVL 220 A L Sbjct: 250 ALSAL 254 >gi|168048900|ref|XP_001776903.1| predicted protein [Physcomitrella patens subsp. patens] gi|162671759|gb|EDQ58306.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1152 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 5/48 (10%) Query: 181 SGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 SGPDH F + + + A G +K AE+ + Sbjct: 156 SGPDHAKTFVAELTVPLRNKGEVFVAVGQGPNKAEAERACCTAACAKL 203 >gi|126342287|ref|XP_001363000.1| PREDICTED: similar to NF-kappaB repressing factor, [Monodelphis domestica] Length = 680 Score = 44.5 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + G A+G SK+ ++ AA++ LK Sbjct: 363 NRTWRCQVFLQGHCLAEGYG-SKKVSKHAAASKALKIL 399 >gi|255584888|ref|XP_002533159.1| RNA binding protein, putative [Ricinus communis] gi|223527031|gb|EEF29218.1| RNA binding protein, putative [Ricinus communis] Length = 532 Score = 44.1 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 62/212 (29%), Gaps = 27/212 (12%) Query: 9 LEKR--IGYA------FANRS-------LLEKALTHSSISHSYQES----YERLEFLGDR 49 LE + +GY+ F + + LL A H S + + RL FLG Sbjct: 137 LEAKQALGYSLEPSDNFGDDNPAKQFDTLLYLAFQHPSCERTNARHVKYGHSRLCFLGQY 196 Query: 50 ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 +L L + + R +L+ + + L + I D+ K + Sbjct: 197 VLELAFCEFFLQRYPRESPAPMRERVFALIGKRNLPKWIKAASLQNLIFPYDDIDKLLRK 256 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 V +L A+YL G+ F A R ++ + Sbjct: 257 DREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPEAEDCQPKLRRQLEDVDYVSVE 316 Query: 168 KFGVTPEYKVTFRSGP------DHDPRFTVVV 193 G ++ P H F V Sbjct: 317 FEGNKLSWQDVAAYKPPEDALFAHPRLFRACV 348 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 5/87 (5%) Query: 18 ANRSL---LEKALTHSS-ISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + + YERLEF+G +I L+++ L A L Sbjct: 389 RNIELGLGLQLCFLHPSKYKFEHPRFCYERLEFVGQKIQDLVLAERLLMKHLDAPGKWLQ 448 Query: 73 VRFNSLVSAETCSQVARELDLASFIRV 99 R L+ + C + R+ L FI Sbjct: 449 ERHRRLLMNKFCGRYLRDKHLHHFIVY 475 >gi|156541332|ref|XP_001600771.1| PREDICTED: similar to GA14612-PA [Nasonia vitripennis] Length = 701 Score = 44.1 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 3/68 (4%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 K + K GV + T + P + F V EI G G SK A Q A Sbjct: 453 QPKNAIMVLNEMKTGVQFTFPETQSAMP--NSLFLVHAEIEGKTY-VGQGVSKPLARQNA 509 Query: 216 AAEVLKRE 223 A LK Sbjct: 510 AENALKSL 517 >gi|156401537|ref|XP_001639347.1| predicted protein [Nematostella vectensis] gi|156226475|gb|EDO47284.1| predicted protein [Nematostella vectensis] Length = 880 Score = 44.1 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 16/34 (47%) Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 V + G+ K+ +EQ AA LK+ GI Sbjct: 616 VISDHKFHSTGLHKDKKQSEQNAAWFALKKLGII 649 Score = 42.2 bits (97), Expect = 0.050, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 186 DPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKREGIW 226 D +F + + G + C +K+ +EQ AA L+R G+ Sbjct: 838 DGKFVCDLLVDGFTF-RAKGCQTKKGSEQSAARIALQRFGVL 878 >gi|316962794|gb|EFV48776.1| ribosome biogenesis protein BOP1 [Trichinella spiralis] Length = 292 Score = 44.1 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 48/175 (27%), Gaps = 7/175 (4%) Query: 48 DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 D + + A + VS + +++ + ++ + + Sbjct: 89 DNTIKPCKVFRYHDSGVRAVACHGRYPLFASVSDDATAKIFHCTVYNDYDKMPLIVPLKI 148 Query: 108 CSFMTSIQADVVESLIAAL------YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161 ++ + G V F + + L Sbjct: 149 LRSHRKVETVGSILDCTFHPTQPWLFTSGADGVICLFTGLKVSMTTAEGCNKGVKSPLSL 208 Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 K G+TP Y++ G D F + I + G SK+ A+Q AA Sbjct: 209 LHEICGKKGLTPMYELLTSQGQGVDSLFVYRLCID-SVVSTGRGKSKKLAKQNAA 262 >gi|224076842|ref|XP_002305017.1| predicted protein [Populus trichocarpa] gi|222847981|gb|EEE85528.1| predicted protein [Populus trichocarpa] Length = 967 Score = 44.1 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 18/36 (50%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ G +G ++R A++ AA +K+ Sbjct: 749 QFSIETWFVGEKVGEGTGKTRREAQRQAAEGSIKKL 784 Score = 37.6 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 14/31 (45%) Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 VEI G +G+ + A+ AA + L Sbjct: 883 HAQVEIDGQVLGKGIGLTWDEAKMQAAEKAL 913 >gi|157129657|ref|XP_001655441.1| adenosine deaminase acting on RNA (adar)-2 [Aedes aegypti] gi|108882042|gb|EAT46267.1| adenosine deaminase acting on RNA (adar)-2 [Aedes aegypti] Length = 657 Score = 44.1 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 Y + ++GP H P FT+ V + G G SK+ A Sbjct: 19 YNMESQTGPVHAPLFTMSVVVDGQKF-MGHGRSKKLA 54 >gi|242037143|ref|XP_002465966.1| hypothetical protein SORBIDRAFT_01g049110 [Sorghum bicolor] gi|241919820|gb|EER92964.1| hypothetical protein SORBIDRAFT_01g049110 [Sorghum bicolor] Length = 178 Score = 44.1 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 16/31 (51%) Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 TV V + G+ + K+ A+++AA L Sbjct: 38 TVEVFVDGIQIGVAQNPQKKMAQKLAARNAL 68 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 8/74 (10%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMDCSKRA 210 + L + + P+Y+ GP H RF V ++ + M S + Sbjct: 96 RQTLNDICLRRQWPMPQYRCINEGGPAHAKRFVYAVRVNTSDRGWTDECIGEPM-PSVKK 154 Query: 211 AEQVAAAEVLKREG 224 A+ AA +L+ Sbjct: 155 AKDSAAVLLLELLN 168 >gi|145543444|ref|XP_001457408.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124425224|emb|CAK90011.1| unnamed protein product [Paramecium tetraurelia] Length = 327 Score = 44.1 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 76/253 (30%), Gaps = 45/253 (17%) Query: 16 AFANRSLLEKALT---H------SSISHSYQESYERLEFLGDRILGLLISTLL------- 59 F N++LL +ALT H S + E L G + L + Sbjct: 7 QFKNKNLLIRALTNKIHELEYNQKSNQTYVYGNNEDLTVAGQQFLEFYFYDYMLLQGYSS 66 Query: 60 -------FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 K ++ L++ + +++ +L+L +F++V + Sbjct: 67 FLAFRFPNQLSYFKKPNDIIQLRQRLINDQYLAEIGLQLNLQNFLKVG---NQIQLKTNQ 123 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA----------KTELQ 162 + AD +++LI A Y D ++ Y L + + +Q Sbjct: 124 KVLADTIKALIIAQYYDKYQDLESLRDLLYPVMEFLLNKQAIIKYLGQSTVGINSPNVIQ 183 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM---------DCSKRAAEQ 213 + + ++ F + + + + SKR EQ Sbjct: 184 SKEEIEVLPKMIVEWKKNEKNNNQSMFLIQLVLDIQSKILAENYQLKIEKQGISKRITEQ 243 Query: 214 VAAAEVLKREGIW 226 E L+ W Sbjct: 244 QVYLEALQELKRW 256 >gi|146419064|ref|XP_001485497.1| hypothetical protein PGUG_03225 [Meyerozyma guilliermondii ATCC 6260] Length = 230 Score = 44.1 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 45/114 (39%), Gaps = 3/114 (2%) Query: 2 SALRYSTLEKRI--GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 +A +++ + YA ++ L + LTH S + + E+L +G ++L L + Sbjct: 56 NADNLRPIKQFLDDKYAISD-ELALQVLTHKSFGNGIKPYNEKLSAMGLKVLNLYCAKYT 114 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 + +A E + + ++ + ++A L L F + + Sbjct: 115 TDTPTTANENAIDGKNVDVLGSPMAKELAGRLALGLFAKSHKLNQVLFWKSYNH 168 >gi|117558547|gb|AAI27296.1| LOC548984 protein [Xenopus (Silurana) tropicalis] Length = 451 Score = 44.1 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 4/81 (4%) Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-M 204 ++ + K L EW + P Y R D F VV++ + A Sbjct: 312 FDKRNYMSQITPKMLLLEWCRKRKLPQPVYHTVQR---PVDKFFQSVVKVDEMQYASTLW 368 Query: 205 DCSKRAAEQVAAAEVLKREGI 225 D SK+ AEQ AA L G+ Sbjct: 369 DKSKKLAEQSAAIVCLHTLGL 389 >gi|289629402|gb|AAB70372.2| Hypothetical protein F39E9.7 [Caenorhabditis elegans] Length = 125 Score = 44.1 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + +L E+A + P ++ F + +G SK A++ A Sbjct: 11 NPVAQLNEYAQKFYKKYPTFEFVKEQAVGKHRVFIIQATFEDKTL-EGRGPSKMIAKRAA 69 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 70 AEAILESIG 78 >gi|312283555|dbj|BAJ34643.1| unnamed protein product [Thellungiella halophila] Length = 502 Score = 44.1 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 18/36 (50%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 RF+V +SG +G+ S+R A AA ++ Sbjct: 291 RFSVETWLSGEKIGEGIGKSRREALHKAAEVSIQNL 326 Score = 38.8 bits (88), Expect = 0.65, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 13/36 (36%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 H VEI G +G+ + A AA L Sbjct: 422 HRDELHAQVEIDGRVLGEGVGSTWDEARMQAAERAL 457 >gi|296089026|emb|CBI38729.3| unnamed protein product [Vitis vinifera] Length = 227 Score = 44.1 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 16/31 (51%) Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 TV V I G+ + K+ A+++AA L Sbjct: 90 TVEVFIDGVQIGIAQNPQKKMAQKLAARNAL 120 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 6/75 (8%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAA 211 + L + + P Y+ GP H RFT V ++ + + S + A Sbjct: 151 RQTLNDICLRRNWPMPVYRCVNEGGPAHAKRFTFAVRVNTNDKGWTDECIGEPMPSVKKA 210 Query: 212 EQVAAAEVLKREGIW 226 + AA +L+ W Sbjct: 211 KDSAAVLLLELLNKW 225 >gi|194210388|ref|XP_001489530.2| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Equus caballus] Length = 1272 Score = 44.1 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +FT V + G GM S K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFTCEVRVEGYNY-TGMGNSTNKKDAQSNAARD 64 >gi|170572085|ref|XP_001891977.1| dihydrouridine synthase domain containing protein [Brugia malayi] gi|158603180|gb|EDP39210.1| dihydrouridine synthase domain containing protein [Brugia malayi] Length = 437 Score = 44.1 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 32/123 (26%), Gaps = 11/123 (8%) Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 S + A S L++ + A Sbjct: 304 SDICKAWSISDIYNCYKNIRKRATQKRKFEVDDETGISFIDLTFPPKRLRDRSGAVTPKC 363 Query: 173 PEYKVTFRSGPDH----------DPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLK 221 +G + D R+ +VEI + + +K+ AEQVAA L Sbjct: 364 ILNAFCDENGINRPIYQCKLRITDKRYEAIVEIDHKKFSSRIGQPNKKMAEQVAALAALI 423 Query: 222 REG 224 G Sbjct: 424 GLG 426 >gi|255587179|ref|XP_002534167.1| conserved hypothetical protein [Ricinus communis] gi|223525754|gb|EEF28216.1| conserved hypothetical protein [Ricinus communis] Length = 89 Score = 44.1 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 17/37 (45%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P F + G + SK+ AEQ+AA V+K Sbjct: 18 PVFISSLLFDGKTYTGEVCASKKEAEQLAAMAVIKTL 54 >gi|195045040|ref|XP_001991926.1| GH12926 [Drosophila grimshawi] gi|193901684|gb|EDW00551.1| GH12926 [Drosophila grimshawi] Length = 460 Score = 44.1 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 44/173 (25%), Gaps = 6/173 (3%) Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 + + +E RF + + ++ D + + Sbjct: 278 HNTKYCVQSILRELQETPRGKRFLQCQTLQQICEIWHLGDYCRRRQQELKDHGNAGRANV 337 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172 + + + +E + + + KT L A Sbjct: 338 ILSECLNNKRQKLDLSEDAMEEYEGVISRKMAFLRSTYTSDTQLPKTVLYVHAGRLGKQP 397 Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224 P Y+ D F + G + + +K+ AEQ AA L G Sbjct: 398 PCYETQRC-----DKLFRAICSYDGQRYSSSFWEKNKKQAEQGAALVALLELG 445 >gi|126304916|ref|XP_001374839.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 507 Score = 44.1 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 16/34 (47%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V + ++ +G SK+ A+ AA L Sbjct: 117 RHFSVCAMLDEMSCPEGTGSSKKEAKGQAAILAL 150 >gi|326510101|dbj|BAJ87267.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 304 Score = 44.1 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 21/68 (30%), Gaps = 1/68 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215 + K T R+GP H P F V I G D + + AE A Sbjct: 113 PYKSQLQVYAQKRHKDLPSYDTIRNGPPHAPLFRSTVTIDGRTFESPQDYHTTKEAEFAA 172 Query: 216 AAEVLKRE 223 A L Sbjct: 173 ARVALMSL 180 Score = 42.2 bits (97), Expect = 0.054, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 10/59 (16%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAP-------AQGMDCSKRAAEQVAAAEVLKRE 223 GP H RF V ++G G + A +AA +R Sbjct: 42 PAPDYAHRSEGPAHLLRFRATVAVNGEVYHSPDDGGGSGTA---KEAHNLAAKAAFERL 97 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 1/45 (2%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223 + GP H P F V I G + + +E AA L Sbjct: 229 QEGPSHAPLFKSTVTIDGQTFESPQYCQTIKESENAAANLALMSL 273 >gi|242054547|ref|XP_002456419.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor] gi|241928394|gb|EES01539.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor] Length = 448 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 5/71 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMDCSKRAAE 212 K+ LQE + P Y+ T R GP H P F V ++G + + +G S + A Sbjct: 1 MYKSRLQELCQKRRWAPPVYEPT-REGPAHTPLFRATVVVNGESFSSPDEGE-RSVKEAC 58 Query: 213 QVAAAEVLKRE 223 +AA + Sbjct: 59 NLAAMAAFENL 69 Score = 39.1 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%) Query: 189 FTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKREG 224 F VEI G A +G +K+ AE AA + Sbjct: 208 FISTVEIQG-ATFRGEPGNTKKQAEMNAAKIAFQHFK 243 Score = 38.4 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 1/36 (2%) Query: 186 DPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220 P F V I G + + AE AA L Sbjct: 122 APLFKSEVTIDGQTFESPEYCRTMKEAETAAAKVAL 157 >gi|23238148|ref|NP_694466.1| Vp8 [Kadipiro virus] gi|3850247|gb|AAC72049.1| Vp8 [Kadipiro virus] Length = 302 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + K LQE + P Y+ + GPDH P TV + +G+ + S+ AE+ Sbjct: 1 MNNVKGMLQELCVKRGLELPVYEKLSKVGPDHAPTITVKLTANGIEVIEA-ASSRAQAEK 59 Query: 214 VAAAEVLKREG 224 +AAA + ++ Sbjct: 60 LAAATLYEKMK 70 >gi|109101248|ref|XP_001108840.1| PREDICTED: 39S ribosomal protein L44, mitochondrial [Macaca mulatta] Length = 332 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 71/236 (30%), Gaps = 21/236 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48 R+ F+ LL+ A +S S +S + L G Sbjct: 72 IQAFGHRLQENFS-LDLLKTAFVNSCYIKSEEAKRQQLGIEKEAVLLNLKSNQELSEQGT 130 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ L + F + + L E VAR L + Sbjct: 131 SFSQTCLTQFLEDEFPDLPTEGIRNLVDFLTGEEVVCHVARNLAVEQLTLSEEFPVPP-- 188 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + + V+ +L+ + + F+ + L D L E + Sbjct: 189 TVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWKIIDPMGLLVEELKKR 248 Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 249 NISAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304 >gi|330844167|ref|XP_003294006.1| hypothetical protein DICPUDRAFT_84511 [Dictyostelium purpureum] gi|325075596|gb|EGC29463.1| hypothetical protein DICPUDRAFT_84511 [Dictyostelium purpureum] Length = 373 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 21/52 (40%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T G +H F ++ ++G + +K+ +E+ A VL+ Sbjct: 17 PYATYKTETRGSEHKKDFRSILTVNGRDISSSWKKTKKDSEKECAKNVLEYL 68 >gi|240256018|ref|NP_193824.4| double-stranded RNA binding [Arabidopsis thaliana] gi|332658976|gb|AEE84376.1| double-stranded RNA-binding domain (DsRBD)-containing protein [Arabidopsis thaliana] Length = 743 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 20/42 (47%) Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +D + +++ + + K+ +EQ AA L++ GI Sbjct: 34 SNDCLYRCHLQLPEFSVVSNVFKRKKDSEQSAAELALEKLGI 75 >gi|194895115|ref|XP_001978186.1| GG17837 [Drosophila erecta] gi|190649835|gb|EDV47113.1| GG17837 [Drosophila erecta] Length = 473 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 186 DPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224 D F + G + + +K+ AEQ AA L G Sbjct: 419 DKLFRSICTFDGQRFSSSFWEKNKKQAEQGAALVALLHLG 458 >gi|125603259|gb|EAZ42584.1| hypothetical protein OsJ_27148 [Oryza sativa Japonica Group] Length = 125 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 1/62 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVAAAEVLK 221 + + T G H +F V + G + + + AEQ AA Sbjct: 44 QEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAAKVAYD 103 Query: 222 RE 223 Sbjct: 104 TL 105 >gi|5262782|emb|CAB45887.1| putative protein [Arabidopsis thaliana] gi|7268889|emb|CAB79092.1| putative protein [Arabidopsis thaliana] Length = 870 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 20/42 (47%) Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 +D + +++ + + K+ +EQ AA L++ GI Sbjct: 34 SNDCLYRCHLQLPEFSVVSNVFKRKKDSEQSAAELALEKLGI 75 >gi|113476425|ref|YP_722486.1| ribonuclease III [Trichodesmium erythraeum IMS101] gi|110167473|gb|ABG52013.1| ribonuclease III [Trichodesmium erythraeum IMS101] Length = 209 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 11/129 (8%) Query: 16 AFANRSLLEKALTHSSISHSY------QESYERLEFLGDRILGL-----LISTLLFNHFD 64 F + LLE ALTH + + Q+ + LE G LG +IS L +F Sbjct: 17 KFKHPELLEIALTHPNHIYDRTNIIRPQQKQQVLEHQGLANLGYVVFSRVISKYLSKNFS 76 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S + L + + LVS + S+ A++L L F ++ + S + A + E+LI Sbjct: 77 SLGKATLIIIESDLVSIKMLSEFAKDLKLRQFSQLGKSYKWKHKSEKNKMLAQMFEALIG 136 Query: 125 ALYLDGGIE 133 +YL+ + Sbjct: 137 VIYLEFDKD 145 >gi|332246671|ref|XP_003272476.1| PREDICTED: 39S ribosomal protein L44, mitochondrial-like [Nomascus leucogenys] Length = 340 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 72/236 (30%), Gaps = 21/236 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48 R+ +F+ LL+ A +S S +S + L G Sbjct: 72 IQAFGHRLQESFS-LDLLKTAFVNSCYIKSEEAKRQQLGIEKEAVLLNLKSNQELSEQGT 130 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ L + + + + L E VAR L + Sbjct: 131 SFSQTCLTQFLEDEYPDLPTEGIKNLTDFLTGEEVVCHVARNLAVEQLTLSEEFPVPP-- 188 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + + V+ +L+ + + F+ + L + L E + Sbjct: 189 TVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWKIINPMGLLVEELKKR 248 Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 249 NISAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304 >gi|195385930|ref|XP_002051657.1| GJ11132 [Drosophila virilis] gi|194148114|gb|EDW63812.1| GJ11132 [Drosophila virilis] Length = 318 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KR 209 RD EL+++ P ++ +SG + P F ++ + S K+ Sbjct: 99 NMNRDMLKELRDYCVRHDMPLPIIEIVQQSGSPNAPEFVACCSVASIKR---YGKSDKKK 155 Query: 210 AAEQVAAAEVL 220 A Q AA E+L Sbjct: 156 DARQRAAIEML 166 >gi|114052563|ref|NP_001039786.1| 39S ribosomal protein L44, mitochondrial precursor [Bos taurus] gi|116256057|sp|Q2KIS2|RM44_BOVIN RecName: Full=39S ribosomal protein L44, mitochondrial; Short=L44mt; Short=MRP-L44; Flags: Precursor gi|86827383|gb|AAI12532.1| Mitochondrial ribosomal protein L44 [Bos taurus] gi|296490187|gb|DAA32300.1| mitochondrial ribosomal protein L44 precursor [Bos taurus] Length = 332 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 70/234 (29%), Gaps = 29/234 (12%) Query: 12 RIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGDRILGLL 54 R+ F+ LL+ A +S S + + L G Sbjct: 78 RLQETFS-LDLLKTAFVNSCYIKSEEAKRQKLGIEKEAVLLNLKDNQELSEQGTSFSQTC 136 Query: 55 ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114 ++ + F + + L E VAR L + + ++ Sbjct: 137 LTQFFEDAFPDLPTEGVKSLVDYLTGEEVVCHVARNLAVEQLTLSADFP------VPPAV 190 Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL----KSGKFRRDAKTELQEWAHAKFG 170 ++I AL G E F+ + + + L + + Sbjct: 191 LRQTFFAVIGALLHSSGPERTSLFIRDFLITQMTGKELFEIWKIINPMGLLVQELKKRNI 250 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 251 SVPESRLTRQSGSTTALPVYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304 >gi|82469804|gb|ABB77160.1| R2D2 [Drosophila mauritiana] Length = 302 Score = 44.1 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 43/152 (28%), Gaps = 8/152 (5%) Query: 74 RFNSLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 ++ +V + + + + A + + + Sbjct: 1 LHEFCAKTNNTPPTYHFINGEDGGFVCKVELLEIEALGNGRSKRDAKHLAAANIMRKIQI 60 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 + D + RD EL+++ P +V +SG P F Sbjct: 61 LPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVRHDMPLPCIEVVQQSGTPSAPEFV 120 Query: 191 VVVEISGLAPAQGMDCS--KRAAEQVAAAEVL 220 ++ + S K+ A Q AA E+L Sbjct: 121 ACCSVASIVR---YGKSDKKKDARQRAAIEML 149 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 H T T+ D F VE+ + A G SKR A+ +AAA ++++ I Sbjct: 2 HEFCAKTNNTPPTYHFINGEDGGFVCKVELLEIE-ALGNGRSKRDAKHLAAANIMRKIQI 60 Query: 226 W 226 Sbjct: 61 L 61 >gi|293355281|ref|XP_002728655.1| PREDICTED: adenosine deaminase domain containing 2 [Rattus norvegicus] Length = 528 Score = 44.1 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 17/33 (51%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F+V E+ GL G SK A+Q AA L+ Sbjct: 123 FSVCAELDGLVCPAGTGSSKLEAKQQAALSALQ 155 >gi|149038317|gb|EDL92677.1| rCG51254 [Rattus norvegicus] Length = 194 Score = 44.1 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 17/33 (51%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F+V E+ GL G SK A+Q AA L+ Sbjct: 123 FSVCAELDGLVCPAGTGSSKLEAKQQAALSALQ 155 >gi|293343395|ref|XP_002725441.1| PREDICTED: similar to testis nuclear RNA-binding protein [Rattus norvegicus] Length = 301 Score = 44.1 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 17/33 (51%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F+V E+ GL G SK A+Q AA L+ Sbjct: 123 FSVCAELDGLVCPAGTGSSKLEAKQQAALSALQ 155 >gi|307199731|gb|EFN80210.1| NF-kappa-B-repressing factor [Harpegnathos saltator] Length = 391 Score = 44.1 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 16/55 (29%) Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + + I A S++ A++ AAA L + Sbjct: 179 CSVNVSGNKLEWKYNKKNKSCDCTIYIDSKRVACASGSSQKIAKKEAAAVALDKL 233 >gi|307176984|gb|EFN66290.1| Dosage compensation regulator [Camponotus floridanus] Length = 1243 Score = 43.8 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 1/53 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 +GP H RF + + G G +K+ A+ AA + Sbjct: 12 CAKNGKEPQFDVRPTGPKHRQRFLCELRVPGFDYVGAGNSTNKKDAQGNAAKD 64 >gi|222537768|ref|NP_001138509.1| interferon-induced, double-stranded RNA-activated protein kinase [Pan troglodytes] gi|208690875|gb|ACI31213.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pan paniscus] gi|208690877|gb|ACI31214.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pan troglodytes] Length = 552 Score = 43.8 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E + GP+ F ++ + G +K+ A+Q+AA + Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTSSTKQEAKQLAAKLAYLQI 165 Score = 41.5 bits (95), Expect = 0.084, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 14/28 (50%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I G +G S Sbjct: 32 NSGPPHDRRFTFRVIIDGREFPEGEGRS 59 >gi|114576952|ref|XP_001166509.1| PREDICTED: eukaryotic translation initiation factor 2-alpha kinase 2 isoform 4 [Pan troglodytes] Length = 552 Score = 43.8 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 V E + GP+ F ++ + G +K+ A+Q+AA + Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTSSTKQEAKQLAAKLAYLQI 165 Score = 41.5 bits (95), Expect = 0.084, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 14/28 (50%) Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207 SGP HD RFT V I G +G S Sbjct: 32 NSGPPHDRRFTFRVIIDGREFPEGEGRS 59 >gi|242219204|ref|XP_002475384.1| predicted protein [Postia placenta Mad-698-R] gi|220725403|gb|EED79391.1| predicted protein [Postia placenta Mad-698-R] Length = 125 Score = 43.8 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 1/104 (0%) Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + A + + + L W +FG + Sbjct: 13 ASAAPHACSLNQLRSAARWTARCFHAGPQHLNMPLHPRMTLNNWVQGRFGRADDLTSEEL 72 Query: 181 -SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +GP H + V+V + +G K AA+ AA L Sbjct: 73 LTGPRHAATWVVIVYFRSIEYGRGTSTKKNAAKDQAAERALAAL 116 >gi|255555995|ref|XP_002519032.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223541695|gb|EEF43243.1| double-stranded RNA binding protein, putative [Ricinus communis] Length = 978 Score = 43.8 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 18/36 (50%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F+V +G +G ++R A+ VAA +K Sbjct: 752 QFSVEAWFAGERVGEGFGRTRREAQSVAAEASIKNL 787 Score = 41.5 bits (95), Expect = 0.082, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 15/35 (42%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + VEI G +G+ + A+ AA + L Sbjct: 890 NAEVHAQVEIDGQVMGKGIGSTFDEAKMQAAEKAL 924 >gi|307197483|gb|EFN78717.1| Dosage compensation regulator [Harpegnathos saltator] Length = 1243 Score = 43.8 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 1/53 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 +GP H RF + ISG G +K+ A+ AA + Sbjct: 12 CGKNAKEPQFDVRPTGPKHRQRFLCELRISGFDYVGAGNSTNKKDAQGNAAKD 64 >gi|328726844|ref|XP_003249070.1| PREDICTED: double-stranded RNA-specific editase 1-like [Acyrthosiphon pisum] Length = 372 Score = 43.8 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%) Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + V +SG G SK+ A+++A LK Sbjct: 149 ISVIVSGNKY-IGYGKSKKEAKEIACRNALKSL 180 >gi|197100516|ref|NP_001127183.1| 39S ribosomal protein L44, mitochondrial precursor [Pongo abelii] gi|68053049|sp|Q5REY8|RM44_PONAB RecName: Full=39S ribosomal protein L44, mitochondrial; Short=L44mt; Short=MRP-L44; Flags: Precursor gi|55725777|emb|CAH89669.1| hypothetical protein [Pongo abelii] Length = 332 Score = 43.8 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 70/236 (29%), Gaps = 21/236 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48 R+ F+ LL+ A +S S +S + L G Sbjct: 72 IQAFGHRLQENFS-LDLLKTAFVNSCYIKSEEAKRQQLGIEKEAVLLNLKSNQELSEQGT 130 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ L + + + L + VAR L + Sbjct: 131 SFSQTCLTQFLEDEYPDLPTEGIKNLVEFLTGEDVVCHVARNLAVEQLTLSEEFPVPP-- 188 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + + V+ +L+ + + F+ + L + L E + Sbjct: 189 TVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWKIINPMGLLVEELKKR 248 Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 249 NISAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304 >gi|82469842|gb|ABB77179.1| R2D2 [Drosophila simulans] Length = 311 Score = 43.8 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 5/115 (4%) Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 + + A + + + + D + RD EL+++ Sbjct: 47 GNGRSKRDAKHLAAANIMRKIQMLPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVR 106 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAEVL 220 P +V +SG P F ++ + S K+ A Q AA E+L Sbjct: 107 HDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAIEML 158 Score = 39.5 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H T T+ D F VE+ L A G SKR A+ +AAA ++++ Sbjct: 11 HEFCAKTNNTPPTYNFIKGEDGGFVCKVELLELE-ALGNGRSKRDAKHLAAANIMRKI 67 >gi|296205725|ref|XP_002749884.1| PREDICTED: 39S ribosomal protein L44, mitochondrial-like [Callithrix jacchus] Length = 331 Score = 43.8 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 71/236 (30%), Gaps = 21/236 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48 R+ F+ LL+ A +S S +S + L G Sbjct: 72 IQAFGHRLHENFS-LDLLKTAFVNSCYIRSEEAKRQQLGIEKEAVLLNLKSNQELSEQGT 130 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ L + F + + L E VAR L + Sbjct: 131 SFSKTCLTQFLEDEFPDLPTEGIRSLVDFLTGEEVVCHVARNLAVEQLTLSEEFPVPP-- 188 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + + VV +L+ + + F+ + L + L E + Sbjct: 189 TVLQQTFFAVVGALLQSSGPERTALFIRDFLITQMTGKELFEMWKIINPMGLLVEELKKR 248 Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 249 NISLPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304 >gi|115976356|ref|XP_001183590.1| PREDICTED: similar to dsRNA adenosine deaminase [Strongylocentrotus purpuratus] Length = 1733 Score = 43.8 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+PRF + G SK+ + AA L+ Sbjct: 1270 LQQSGPPHNPRFVFAACVGGRRFQHVTSRSKKDGRREAADMALRTL 1315 >gi|115722979|ref|XP_789034.2| PREDICTED: similar to dsRNA adenosine deaminase, partial [Strongylocentrotus purpuratus] Length = 1069 Score = 43.8 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +SGP H+PRF + G SK+ + AA L+ Sbjct: 606 LQQSGPPHNPRFVFAACVGGRRFQHVTSRSKKDGRREAADMALRTL 651 >gi|82469846|gb|ABB77181.1| R2D2 [Drosophila simulans] Length = 311 Score = 43.8 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 5/115 (4%) Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 + + A + + + + D + RD EL+++ Sbjct: 47 GNGRSKRDAKHLAAANIMRKIQMLPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVR 106 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAEVL 220 P +V +SG P F ++ + S K+ A Q AA E+L Sbjct: 107 HDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAIEML 158 Score = 39.5 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H T T+ D F VE+ L A G SKR A+ +AAA ++++ Sbjct: 11 HEFCAKTNNTPPTYNFIKGEDGGFVCKVELLELE-ALGNGRSKRDAKHLAAANIMRKI 67 >gi|82469848|gb|ABB77182.1| R2D2 [Drosophila simulans] gi|82469852|gb|ABB77184.1| R2D2 [Drosophila simulans] Length = 311 Score = 43.8 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 5/115 (4%) Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 + + A + + + + D + RD EL+++ Sbjct: 47 GNGRSKRDAKHLAAANIMRKIQMLPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVR 106 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAEVL 220 P +V +SG P F ++ + S K+ A Q AA E+L Sbjct: 107 HDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAIEML 158 Score = 39.5 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H T T+ D F VE+ L A G SKR A+ +AAA ++++ Sbjct: 11 HEFCAKTNNTPPTYNFIKGEDGGFVCKVELLELE-ALGNGRSKRDAKHLAAANIMRKI 67 >gi|50286821|ref|XP_445840.1| hypothetical protein [Candida glabrata CBS 138] gi|49525146|emb|CAG58759.1| unnamed protein product [Candida glabrata] Length = 226 Score = 43.8 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 2/118 (1%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF-NHFDSAKEGELS 72 G ++ ++L + LTH S +H + E+L LG + L L + G Sbjct: 70 GIELSDAAIL-QCLTHKSFAHGSRPYNEKLNLLGSQYLKLQAAMHSVGPENSFGNLGTPV 128 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 + +A+ L+ F +VS L + + + V+ S I A+ L Sbjct: 129 SKGLVSYQTAAEYVIAKNLEPLVFWKVSDPLNDGPIKGKSKVMSTVLNSFIGAILLQQ 186 >gi|195118471|ref|XP_002003760.1| GI21342 [Drosophila mojavensis] gi|193914335|gb|EDW13202.1| GI21342 [Drosophila mojavensis] Length = 318 Score = 43.8 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KR 209 RD EL+++ P ++ +SG + P F ++ + S K+ Sbjct: 99 NMNRDMLKELRDYCVRHDMPLPVIEIVQQSGSPNAPEFVACCSVASIKR---YGKSDKKK 155 Query: 210 AAEQVAAAEVL 220 A Q AA E+L Sbjct: 156 DARQRAAIEML 166 Score = 38.8 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + V + + A G SKR A+ +AAA ++++ Sbjct: 34 YLCKVVLMDIE-AFGNGRSKRDAKHLAAANIIRKL 67 >gi|332030651|gb|EGI70339.1| Dosage compensation regulator [Acromyrmex echinatior] Length = 1202 Score = 43.8 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 1/53 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 +GP H RF + I G G +K+ A+ AA + Sbjct: 12 CAKNGKEPQFDVRPTGPKHRQRFLCELRIPGFDYVGAGNSTNKKDAQGNAARD 64 >gi|297799970|ref|XP_002867869.1| hypothetical protein ARALYDRAFT_492795 [Arabidopsis lyrata subsp. lyrata] gi|297313705|gb|EFH44128.1| hypothetical protein ARALYDRAFT_492795 [Arabidopsis lyrata subsp. lyrata] Length = 943 Score = 43.8 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 18/37 (48%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + +++ + + K+ +EQ AA L++ GI Sbjct: 51 YRCHLQLPDFSVVSNVFKKKKDSEQSAAELALEKLGI 87 >gi|255540729|ref|XP_002511429.1| conserved hypothetical protein [Ricinus communis] gi|223550544|gb|EEF52031.1| conserved hypothetical protein [Ricinus communis] Length = 185 Score = 43.8 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 6/80 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 L+K+I N LL +A+TH S S + L +G ++ +S Sbjct: 44 LEALQKQIK---QNVGLLRRAMTHPSFSEE---NNRALSVMGSNVIDTFVSLFSLRKDID 97 Query: 66 AKEGELSVRFNSLVSAETCS 85 EL+ R + ET Sbjct: 98 ISSKELNRRIAEISKVETSC 117 >gi|94985992|ref|YP_605356.1| double-stranded RNA binding [Deinococcus geothermalis DSM 11300] gi|94556273|gb|ABF46187.1| double-stranded RNA binding protein [Deinococcus geothermalis DSM 11300] Length = 176 Score = 43.8 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 15/30 (50%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 GP H+ F V+V SG QG SKR Sbjct: 71 EGPPHERVFHVMVSASGRVLGQGEGRSKRD 100 >gi|297600250|ref|NP_001048796.2| Os03g0121800 [Oryza sativa Japonica Group] gi|255674167|dbj|BAF10710.2| Os03g0121800 [Oryza sativa Japonica Group] Length = 165 Score = 43.8 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 16/31 (51%) Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 TV V + G+ + K+ A+++AA L Sbjct: 22 TVEVFVDGVQIGVAQNPQKKMAQKLAARNAL 52 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 8/78 (10%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMDC 206 + + L + + P+Y+ GP H RF V ++ + M Sbjct: 77 QMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPM-P 135 Query: 207 SKRAAEQVAAAEVLKREG 224 S + A+ AA +L+ Sbjct: 136 SVKKAKDSAAVLLLELLN 153 >gi|311223107|gb|ADP76632.1| nonstructural protein NSP3 [Human rotavirus C] Length = 402 Score = 43.8 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 17/25 (68%) Query: 201 AQGMDCSKRAAEQVAAAEVLKREGI 225 A G SK+ A+++AA ++L + G+ Sbjct: 378 AIGSGKSKKEAKRIAAYDILDQLGV 402 >gi|307169925|gb|EFN62434.1| tRNA-dihydrouridine synthase 2-like [Camponotus floridanus] Length = 467 Score = 43.8 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 41/146 (28%), Gaps = 3/146 (2%) Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 +T Q+ L + R + +D + Q V A + + + Sbjct: 310 QTLEQICEVWGLGDYCRSKNKEFRDKG-LLGRFQVMPVMLDKDAKDNNVSHKRKIYEEND 368 Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 R + + + + + D F VV + G Sbjct: 369 VSLMRCAFLRNSYTTDSELPKTRLLKWTKENRKKMPIYNTQQE-DKLFCSVVTVDGRKYG 427 Query: 202 QG-MDCSKRAAEQVAAAEVLKREGIW 226 + +K+ AEQ AA L G+ Sbjct: 428 SSFWEKNKKWAEQGAALVCLYFLGVI 453 >gi|328787042|ref|XP_393745.3| PREDICTED: tRNA-dihydrouridine synthase 2-like [Apis mellifera] Length = 460 Score = 43.8 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 21/175 (12%), Positives = 44/175 (25%), Gaps = 8/175 (4%) Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 + N +E L +F S + E + D + + + + S Sbjct: 281 NTKYCIQNILREQQESTLGKKFLSSQTLEQICNLWDLSDYFYLKKKEFEEKGLLGRSQVS 340 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 + + E + + + + K Sbjct: 341 PMKEDEKQTQLCNKRKILEEEDVILMHCAFLRNNYITDLELPKTVLHKWTQTQRKKMPNY 400 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGIWT 227 + F +V + G + +K+ AEQ AA L G+ + Sbjct: 401 NTQQKG-------KLFRSIVTVDGRKYGSSFWEKNKKWAEQGAALVCLFSLGLIS 448 >gi|157131542|ref|XP_001655871.1| tRNA-dihydrouridine synthase [Aedes aegypti] gi|108871488|gb|EAT35713.1| tRNA-dihydrouridine synthase [Aedes aegypti] Length = 461 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 184 DHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225 D F +V++ + + SK+ AEQ AA L GI Sbjct: 405 HKDKLFRAIVQVGDEKYSSSFWEKSKKYAEQSAALTSLLHLGI 447 >gi|198431249|ref|XP_002129094.1| PREDICTED: similar to Zinc finger RNA-binding protein (hZFR) (M-phase phosphoprotein homolog) [Ciona intestinalis] Length = 1143 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 1/47 (2%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAA 216 G + F + ++ G SK+ A+ AA Sbjct: 356 HLRPVYDVQSIGERPEQTFRCELRVNNYKFVGVGEAESKKEAQTEAA 402 >gi|189236895|ref|XP_967977.2| PREDICTED: C3PO protein [Tribolium castaneum] Length = 3759 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V+ G A G SK+ A+ +A L + Sbjct: 33 FKCTVKAGG-VTACGYGTSKKNAKHESAKNALVKL 66 >gi|148233852|ref|NP_001089264.1| hypothetical protein LOC734311 [Xenopus laevis] gi|58399163|gb|AAH89298.1| MGC85120 protein [Xenopus laevis] Length = 483 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 1/90 (1%) Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 + DG + R + K + + +YK+ +SGP H Sbjct: 356 FDDGSSDEKDPNKKMRRNLRKILDCKAIDSNQPMNALMRLNQIRPGLQYKLLSQSGPVHA 415 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 P F++ V++ G + SK+ A+ A Sbjct: 416 PVFSMSVDVDGTTH-EASGASKKTAKLHVA 444 >gi|21492487|ref|NP_659606.1| dsRNA-binding PKR inhibitor [Sheeppox virus] Length = 177 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 27/119 (22%), Gaps = 5/119 (4%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + + + S D + + Sbjct: 47 YKLHNDGFIFMIRSNPPKWFKK-----NGIDNDDNENNNTKKLNKSFSDTIPYYKIVLWK 101 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + +F Y G P F V ISG+ + +K+ A+Q Sbjct: 102 EKNPCSAINEYCQFTSRDWYINISSCGNGRKPMFLASVIISGIKFFPEIGNTKKEAKQK 160 >gi|115680274|ref|XP_001190439.1| PREDICTED: similar to tRNA-dihydrouridine synthase [Strongylocentrotus purpuratus] gi|115717831|ref|XP_001201154.1| PREDICTED: similar to tRNA-dihydrouridine synthase [Strongylocentrotus purpuratus] Length = 499 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 1/61 (1%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224 + F V + A SK+ +EQ AAA ++ G Sbjct: 333 EYCHAKKLHPPHYTLEEDIENRVFRSSVIVDDQEYATTLWCTSKKYSEQGAAAVCCQQLG 392 Query: 225 I 225 + Sbjct: 393 L 393 >gi|254577996|ref|XP_002494984.1| ZYRO0B00704p [Zygosaccharomyces rouxii] gi|238937874|emb|CAR26051.1| ZYRO0B00704p [Zygosaccharomyces rouxii] Length = 244 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 19/47 (40%) Query: 22 LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 L+ + TH S +H + E+L LG + L + H D Sbjct: 81 LVLQCFTHKSFAHGSKPYNEKLNVLGSQFLKYQAAIHSLRHKDQLSP 127 >gi|82469844|gb|ABB77180.1| R2D2 [Drosophila simulans] Length = 311 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 5/115 (4%) Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 + + A + + + + D + RD EL+++ Sbjct: 47 GNGRSKRDAKHLAAANIMRKIQMLPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVR 106 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAEVL 220 P +V +SG P F ++ + S K+ A Q AA E+L Sbjct: 107 HDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAIEML 158 Score = 39.5 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H T T+ D F VE+ L A G SKR A+ +AAA ++++ Sbjct: 11 HEFCAKTNNTPPTYNFIKGEDGGFVCKVELLELE-ALGNGRSKRDAKHLAAANIMRKI 67 >gi|311223111|gb|ADP76634.1| nonstructural protein NSP3 [Human rotavirus C] gi|311223115|gb|ADP76636.1| nonstructural protein NSP3 [Human rotavirus C] Length = 402 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 D +T +++ A A G SK+ A+++AA ++L + GI Sbjct: 362 DGSITYTCYMKLE-SAEANGSGRSKKEAKRIAAYDILDQLGI 402 >gi|270005018|gb|EFA01466.1| hypothetical protein TcasGA2_TC007013 [Tribolium castaneum] Length = 4051 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V+ G A G SK+ A+ +A L + Sbjct: 33 FKCTVKAGG-VTACGYGTSKKNAKHESAKNALVKL 66 Score = 39.5 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 D F + + G +K+ A+Q +A ++L+ Sbjct: 115 DGEFFFKCSFANEE-SIGEGMNKKDAKQDSARKMLE 149 >gi|238576066|ref|XP_002387900.1| hypothetical protein MPER_13150 [Moniliophthora perniciosa FA553] gi|215448751|gb|EEB88830.1| hypothetical protein MPER_13150 [Moniliophthora perniciosa FA553] Length = 298 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 17/132 (12%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSI-----------SHSYQESYERLEFLGDR 49 M + L K ++ + + TH S+ + E+ E LGD Sbjct: 1 MHSFELPALPKI-----NSKEIERQIFTHRSVYGRPTHIFEDLPNDPNPDNEKFEHLGDS 55 Query: 50 ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD-LASFIRVSSDLRKDVC 108 +L L+++ LL + G + +V+ +T + +++ + Sbjct: 56 VLSLVVTDLLLEMCPGLRVGPSTKIRAMIVANQTLATISQRYKLPHRLSVHPAQAEVLKM 115 Query: 109 SFMTSIQADVVE 120 S S + Sbjct: 116 SIHASGMCVSIS 127 >gi|219852808|ref|YP_002467240.1| ribonuclease III [Methanosphaerula palustris E1-9c] gi|219547067|gb|ACL17517.1| ribonuclease III [Methanosphaerula palustris E1-9c] Length = 160 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 5/130 (3%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYER----LEFLGDRILGLLISTLLF 60 + LE+RI Y F +++ ++ALT + + +R L LGD ++ LL+ L Sbjct: 6 QIEELERRIKYRFIDQAHPQRALTRLAFAGEQHFEDDRDMDALATLGDAVIDLLVIDDLL 65 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + +GE++V V+ +A LDLA + + A+ E Sbjct: 66 RTGVTR-KGEITVLKVRRVNMSVLRSIAESLDLAPLVFWGKGEETQQVWLSGRVLAECCE 124 Query: 121 SLIAALYLDG 130 ++I A++LDG Sbjct: 125 AVIGAVFLDG 134 >gi|190345739|gb|EDK37673.2| hypothetical protein PGUG_01771 [Meyerozyma guilliermondii ATCC 6260] Length = 617 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 63/214 (29%), Gaps = 17/214 (7%) Query: 19 NRSLLEKALTHSSISHSY------------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 N +L ++ TH S Q E+L G +L + + LL F A Sbjct: 152 NTNLRKRVFTHKSYRQISDFLEADSAEEFAQAHNEKLVLHGRSLLNVALLHLLDKKFPKA 211 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 + ++ L S+ +++A +L+ ++ + + + + L A Sbjct: 212 QAEDIESMKVRLSSSVVLTKMAMGYNLSQHLKHNISKELSNEGKVLVLSTVFLAYLGALF 271 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 ++ +++K + + + L HD Sbjct: 272 SEGYSMDEICLWIEKLYDPIVAEFDSEHMHSARPLAYSELKFLLDP----HLKFKQSGHD 327 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P FT G K A V + L Sbjct: 328 P-FTFKAYYRDTVIGIGSHSDKMMARIVTSENAL 360 >gi|171688648|ref|XP_001909264.1| hypothetical protein [Podospora anserina S mat+] gi|170944286|emb|CAP70396.1| unnamed protein product [Podospora anserina S mat+] Length = 432 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 3/112 (2%) Query: 113 SIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 A+ +++ A+Y G + ++ L+ + EL + Sbjct: 260 KAHANFARAVVGAVYTHCGRAAAKSFVKAHVLCRELDLERLFAFKHPTLELAMLCAREEF 319 Query: 171 VTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P ++ +G P F V V +G + A AA LK Sbjct: 320 EPPVARLLSETGRLSRTPVFVVGVYSGNDKLGEGQGATLEQARLKAAMHALK 371 >gi|161579135|gb|ABX72055.1| C3PO protein [Tribolium castaneum] Length = 117 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V+ G A G SK+ A+ +A L + Sbjct: 15 FKCTVKAGG-VTACGYGTSKKNAKHESAKNALVKL 48 >gi|60476168|gb|AAX21225.1| nonstructural protein 3 [Human rotavirus C] Length = 402 Score = 43.8 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 17/25 (68%) Query: 201 AQGMDCSKRAAEQVAAAEVLKREGI 225 A G SK+ A+++AA ++L + GI Sbjct: 378 AIGSGKSKKEAKRIAAYDILDQLGI 402 >gi|170085983|ref|XP_001874215.1| predicted protein [Laccaria bicolor S238N-H82] gi|164651767|gb|EDR16007.1| predicted protein [Laccaria bicolor S238N-H82] Length = 199 Score = 43.4 bits (100), Expect = 0.021, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 1/69 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE-ISGLAPAQGMDCSKRAAE 212 F SGP H+P + + + G +K+ A+ Sbjct: 1 MAAHVHLFNNTYQRHFRGAVPRYEYQESGPQHEPYWQCSIYDSQDVLIGVGGGKNKKLAK 60 Query: 213 QVAAAEVLK 221 AA ++ Sbjct: 61 DAAADSAIR 69 >gi|46110176|ref|XP_382146.1| hypothetical protein FG01970.1 [Gibberella zeae PH-1] Length = 383 Score = 43.4 bits (100), Expect = 0.021, Method: Composition-based stats. Identities = 31/283 (10%), Positives = 64/283 (22%), Gaps = 65/283 (22%) Query: 2 SALRYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 + + + L R+ + N+ L + L S + + L FLG + + Sbjct: 67 ESAKLAALHARLSLS--NKIPLETLARTLIVPSADQNPSYNNSNLAFLGSTFINYHVLEY 124 Query: 59 LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL------------------------- 93 + + + + E+ Q+AR + Sbjct: 125 IVCKWPRLPMPIVYEVLRAFAGKESLHQIARRWGVEAAAAPGEEVDPGLLQWAPKDSGMQ 184 Query: 94 --ASFIRVSSDL-------------------------RKDVCSFMTSIQADVVESLI--- 123 ++R + S Sbjct: 185 TRWGYVRQEAAYTDRFTPRRGISSRVVFDDDFGDVIEEPKTGEDGYKYYQHEAHSSFVQA 244 Query: 124 ----AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + +Q + + + EL + P ++ Sbjct: 245 VVGSIYTHAGQDAARDFVKSHVLSRQVDVSAMFQFKLPTRELALLCAREGFEAPIARLES 304 Query: 180 RSGPD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +G P F V + S +G S A A+ LK Sbjct: 305 ETGRHSRTPVFIVGIYSSSEKLGEGAGASLDLARWKASMNALK 347 >gi|224069354|ref|XP_002302963.1| predicted protein [Populus trichocarpa] gi|222844689|gb|EEE82236.1| predicted protein [Populus trichocarpa] Length = 452 Score = 43.4 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 17/37 (45%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P F + G++ +K+ AEQ+AA V+ Sbjct: 253 PVFISTLVFDGVSYTGDAGRNKKEAEQLAARAVILSL 289 Score = 43.4 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 11/54 (20%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS------KRAAEQVAAAEVLKRE 223 T GP H PRF V + G S ++AAEQ A L+ Sbjct: 158 YQTLNEGPAHMPRFRSTVWVDGARY-----RSQKTFLHRKAAEQDVANLALESI 206 >gi|195497348|ref|XP_002096060.1| GE25279 [Drosophila yakuba] gi|194182161|gb|EDW95772.1| GE25279 [Drosophila yakuba] Length = 321 Score = 43.4 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 73/232 (31%), Gaps = 19/232 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRI 50 +R+G +F S L++A T S + ++ L G I Sbjct: 67 LFAFSQRLGESFK-VSQLQRAFTEKSFAQREEDRRRQLGIEESDLQMPHNSDLVEKGQHI 125 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + L + + L+S ET + V+ L I+ + Sbjct: 126 AHAYVEAFLQHQLPKVPNDGHHAITSFLLSTETLAHVSSHLGTKDLIQSTVYP--PSAES 183 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 + V+ +L ++ ++ F+ QR L +D L+ + Sbjct: 184 LAKSLYAVIGALASSSGIEKAFLFVRDFICTQLNQRDLLEVWTPQDPIQLLENICQERKL 243 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 E ++ G + + V + + +G + A + AA + L+ Sbjct: 244 GEAEPRLLADCGKNTVLGAYQVGIYANRQLLGKGFGEDLKTATETAAIDALQ 295 >gi|111025395|ref|YP_707815.1| exoribonuclease II [Rhodococcus jostii RHA1] gi|110824374|gb|ABG99657.1| probable exoribonuclease II [Rhodococcus jostii RHA1] Length = 615 Score = 43.4 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 24/84 (28%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 E + + S + + W A + GP H P F Sbjct: 391 EAGENWAPIRREVFDWASRAHPEFGPSVVSMWLQAHPDLPRPEIDGDNRGPSHTPVFAAR 450 Query: 193 VEISGLAPAQGMDCSKRAAEQVAA 216 + + SK+ AEQ AA Sbjct: 451 FRVGQVCGPWATAGSKKRAEQDAA 474 Score = 41.1 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 2/66 (3%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 +++ + A +P V G H P FT V A G +K A Sbjct: 537 QKNPIAWVISHAEHHGHPSP-QWVVRMEGAAHAPVFTCDVRYLDHT-ATGSGTTKNLART 594 Query: 214 VAAAEV 219 AAA++ Sbjct: 595 AAAADL 600 >gi|322801001|gb|EFZ21782.1| hypothetical protein SINV_04122 [Solenopsis invicta] Length = 184 Score = 43.4 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 + + +GP H RF + I G G +K+ A+ AA + Sbjct: 1 MTAMILYFTGPKHRQRFLCELRIPGFDYVGAGNSTNKKDAQGNAAKD 47 >gi|322704127|gb|EFY95726.1| abhydrolase domain-containing protein [Metarhizium anisopliae ARSEF 23] Length = 340 Score = 43.4 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 1/104 (0%) Query: 16 AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 + L H +S + YERLE+LGD L L+ S+L++ F S G S Sbjct: 60 KILDPELEATVFLHPGLSDPLRG-YERLEWLGDAYLELIASSLIYQTFTSTPVGRCSQLR 118 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 L+ +T +Q RE L S ++ DL+KD+ S + Sbjct: 119 EILIRNKTLAQYFREYGLESKAQLPGDLKKDISRGRGSSSDKDI 162 >gi|17506341|ref|NP_491200.1| hypothetical protein D1037.1 [Caenorhabditis elegans] gi|13384432|gb|AAK21366.1| Hypothetical protein D1037.1 [Caenorhabditis elegans] Length = 786 Score = 43.4 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 2/95 (2%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 E++ +K Q + ++ + + E + P + SG DH F Sbjct: 683 EMSIKQRNKINAQNNVPVDLSNKNPISLIMELCAKRRWNPPSFSC-EESGADHLKMFVWT 741 Query: 193 VEISGLAPAQGMD-CSKRAAEQVAAAEVLKREGIW 226 + I+ + K+ + VAA L+ G+ Sbjct: 742 IVINDVEYRPMCGSKQKKEGKAVAAQVALQSLGVL 776 >gi|183986711|ref|NP_001116945.1| adenosine deaminase domain containing 1 (testis-specific) [Xenopus (Silurana) tropicalis] gi|170284982|gb|AAI61180.1| adad1 protein [Xenopus (Silurana) tropicalis] Length = 584 Score = 43.4 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 14/35 (40%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F I G+ GM +K+ A+ AA L Sbjct: 128 FAFCAVIDGIEYKTGMGQNKKEAKANAAQLALDEL 162 >gi|156550653|ref|XP_001604965.1| PREDICTED: similar to maleless protein [Nasonia vitripennis] Length = 1256 Score = 43.4 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 4/68 (5%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219 T +GP H RF + ++G A G +K+ A+ A+ + Sbjct: 6 AFLHQWCAKNSTEPSFEVRPTGPKHRQRFLCELRVNGYDYVAVGNSTNKKDAQGNASRDF 65 Query: 220 ---LKREG 224 L R G Sbjct: 66 VNYLVRIG 73 >gi|159473675|ref|XP_001694959.1| dicer-like protein [Chlamydomonas reinhardtii] gi|158276338|gb|EDP02111.1| dicer-like protein [Chlamydomonas reinhardtii] Length = 1927 Score = 43.4 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 20/92 (21%) Query: 15 YAFANRSLLEKALTHSSI------------------SHSYQESYERLEFLGDRILGLLIS 56 Y F + +L ALTH S Y+ LEFLGD ++GLL S Sbjct: 1650 YQFHDPALALCALTHVSWPVPPVSSSGKGLDAGAGSGGGSGGHYQLLEFLGDAVVGLLAS 1709 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 L+ + ++S+ LV +T + Sbjct: 1710 --LWAYSLGGSPRDMSMTREMLVRNDTLAACC 1739 >gi|22595727|gb|AAN02759.1| putative PKR inhibitor [lumpy skin disease virus] Length = 177 Score = 43.4 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 27/119 (22%), Gaps = 5/119 (4%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + + + S D + + Sbjct: 47 YKLHNDGFIFMIRSNPPKWFKK-----NGIDNDDNENNDTKKLNKSFSDTIPYYKIVLWK 101 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + +F Y G P F V ISG+ + +K+ A+Q Sbjct: 102 EKNPCSAINEYCQFTSRDWYINISSCGNGRKPMFLASVIISGIKFFPEIGNTKKEAKQK 160 >gi|148912911|ref|YP_001293225.1| hypothetical protein GTPV_gp030 [Goatpox virus Pellor] Length = 177 Score = 43.4 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 27/119 (22%), Gaps = 5/119 (4%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + + + S D + + Sbjct: 47 YKLHNDGFIFMIRSNPPKWFKK-----NGIDNNDNDNNDTKKLNKSFSDTIPYYKIVLWK 101 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + +F Y G P F V ISG+ + +K+ A+Q Sbjct: 102 EKNPCSAINEYCQFTSRDWYINISSCGNGRKPMFLASVIISGIKFFPEIGNTKKEAKQK 160 >gi|302881925|ref|XP_003039873.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256720740|gb|EEU34160.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 383 Score = 43.4 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 3/126 (2%) Query: 2 SALRYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + + + L R+ + L +AL S + + L FLG + + L Sbjct: 67 ESAKLAALHARLSLSSKIPLETLARALVVPSADKNPSFNNSNLAFLGSTFINYHVLEYLV 126 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + L + E+ Q+AR + + D +A ++ Sbjct: 127 CKWPRLPMSLLYEALRAYAGKESLHQIARRWGVE--AAAAPGEEVDPGLLQWKPEASGLQ 184 Query: 121 SLIAAL 126 + + Sbjct: 185 TRWGYV 190 Score = 41.5 bits (95), Expect = 0.091, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 3/132 (2%) Query: 93 LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW--KQRALKS 150 + + + + A V++++ A+Y G + FV + + + S Sbjct: 216 FGDMVAMPKTGEEGYKYYQHEAYASFVQAVVGAIYTHCGRDATRDFVKSHILSRDVDVSS 275 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKR 209 + EL + P ++ +G P F V V +G S Sbjct: 276 MFQFQLPTRELAMLCAREGFEAPIARLESETGRLSRTPVFVVGVYSGPEKLGEGSGPSLD 335 Query: 210 AAEQVAAAEVLK 221 A A+ LK Sbjct: 336 IARWNASMNALK 347 >gi|149247898|ref|XP_001528336.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146448290|gb|EDK42678.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 389 Score = 43.4 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 8/30 (26%), Positives = 14/30 (46%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 P+F V + +G+ S + A+ AA Sbjct: 319 PQFLAGVFVGNEKLGEGIGASLKEAQTRAA 348 >gi|195996409|ref|XP_002108073.1| predicted protein [Trichoplax adhaerens] gi|190588849|gb|EDV28871.1| predicted protein [Trichoplax adhaerens] Length = 258 Score = 43.4 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 1/72 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYK-VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 + + L + S ++P+F A +G +KR A Sbjct: 1 MNVNPVSILYMLSQTLHVHLTFDCAPLHNSSSKNNPKFLGSFRFGEYAYGKGEGSNKRTA 60 Query: 212 EQVAAAEVLKRE 223 + AA + L + Sbjct: 61 KVHAAVDALIKL 72 >gi|189182361|gb|ACD81882.1| dicer-like nuclease 1 [Chlamydomonas reinhardtii] Length = 2236 Score = 43.4 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 20/92 (21%) Query: 15 YAFANRSLLEKALTHSSI------------------SHSYQESYERLEFLGDRILGLLIS 56 Y F + +L ALTH S Y+ LEFLGD ++GLL S Sbjct: 1842 YQFHDPALALCALTHVSWPVPPVSSSGKGLDAGAGSGGGSGGHYQLLEFLGDAVVGLLAS 1901 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 L+ + ++S+ LV +T + Sbjct: 1902 --LWAYSLGGSPRDMSMTREMLVRNDTLAACC 1931 >gi|169665428|gb|ACA63429.1| dicer-like 1 protein [Chlamydomonas reinhardtii] Length = 2243 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 20/92 (21%) Query: 15 YAFANRSLLEKALTHSSI------------------SHSYQESYERLEFLGDRILGLLIS 56 Y F + +L ALTH S Y+ LEFLGD ++GLL S Sbjct: 1842 YQFHDPALALCALTHVSWPVPPVSSSGKGLDAGAGSGGGSGGHYQLLEFLGDAVVGLLAS 1901 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 L+ + ++S+ LV +T + Sbjct: 1902 --LWAYSLGGSPRDMSMTREMLVRNDTLAACC 1931 >gi|194862942|ref|XP_001970198.1| GG10497 [Drosophila erecta] gi|190662065|gb|EDV59257.1| GG10497 [Drosophila erecta] Length = 322 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 5/87 (5%) Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 RD L+++ P +V +SG + P F + Sbjct: 86 QDCETMTMGDPDEALININRDMLKALRDYCVRHEMPLPSIEVVQQSGSPNAPEFVACCSV 145 Query: 196 SGLAPAQGMDCS--KRAAEQVAAAEVL 220 + + S K+ A Q AA E+L Sbjct: 146 ASIVR---YGKSDKKKDARQRAAIEML 169 Score = 38.8 bits (88), Expect = 0.65, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T T+ D + V++ L A G SKR A+ +AA +L++ Sbjct: 18 QEFCAKTKNIPPTYNFIDGEDGGYVCKVDLMEL-MAYGNGRSKRDAKHLAAVNILRKI 74 >gi|292628574|ref|XP_001342694.3| PREDICTED: tRNA-dihydrouridine synthase 2-like [Danio rerio] Length = 504 Score = 43.4 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 53/179 (29%), Gaps = 6/179 (3%) Query: 48 DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 D+++ I+ + + + + I + + Sbjct: 266 DQVMQEYITYAVRYDNNPFNTKYCLCQMLRDRVESPFGKRLHAAQTNQEICEVFGMTELF 325 Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 +++ + + A V + + + K L EW+ Sbjct: 326 NKTTAELESR--RASLQASEDLSETPELEDDVVIMPVRFERRDYPPQITPKMFLLEWSRK 383 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225 + P Y+ RS D F V ++ + + SK+ AEQ AA L+ G+ Sbjct: 384 EKLEQPVYETEQRSQ---DRGFQSTVIVADKKYRSTLWEKSKKFAEQAAALVCLRTLGL 439 >gi|326918955|ref|XP_003205750.1| PREDICTED: adenosine deaminase domain-containing protein 1-like [Meleagris gallopavo] Length = 491 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 16/35 (45%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F + + G+ G+ +K+ ++Q AA L Sbjct: 66 FGISAVLDGVYYKTGLGRNKKESKQCAAKLALDEL 100 >gi|242005452|ref|XP_002423579.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis] gi|212506727|gb|EEB10841.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis] Length = 409 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Query: 186 DPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGIW 226 D F +V ++G + +KR AEQ AA L G+ Sbjct: 356 DKLFQSIVTVNGKNYGSSYWEKNKRWAEQSAAIVGLVNLGLL 397 >gi|82469834|gb|ABB77175.1| R2D2 [Drosophila melanogaster] Length = 311 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T T+ P D + VE+ + A G SKR A+ +AA+ +L++ Sbjct: 11 QEFCARTQINLPTYSFIPGEDGGYVCKVELLEIE-AIGNGRSKRDAKHLAASNILRKI 67 Score = 39.9 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211 RD EL+++ + P ++ +SG P F ++ + S K+ A Sbjct: 93 NRDMVKELRDYCVRREMPLPSIEIVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDA 149 Query: 212 EQVAAAEVL 220 Q AA E+L Sbjct: 150 RQRAAIEML 158 >gi|82469836|gb|ABB77176.1| R2D2 [Drosophila melanogaster] Length = 311 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T T+ P D + VE+ + A G SKR A+ +AA+ +L++ Sbjct: 11 QEFCARTQINLPTYSFIPGEDGGYVCKVELLEIE-AIGNGRSKRDAKHLAASNILRKI 67 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211 RD EL+++ + P +V +SG P F ++ + S K+ A Sbjct: 93 NRDMVKELRDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDA 149 Query: 212 EQVAAAEVL 220 Q AA E+L Sbjct: 150 RQRAAIEML 158 >gi|328712008|ref|XP_001944312.2| PREDICTED: dosage compensation regulator-like [Acyrthosiphon pisum] Length = 1430 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 42/98 (42%), Gaps = 1/98 (1%) Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 AA+ D I+ A + ++++ + LK+ ++ + + T ++G Sbjct: 156 AAVCGDWTIDNAKSHLNQFIQSNKLKNIDYKYSCNPKTFLHEWCEKNNLEPQFKTKQAGS 215 Query: 184 DHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVL 220 + PRF V I+G G + + A++ A+ + L Sbjct: 216 NRKPRFICEVIITGHDYIGIGNSANIKYAQENASKDFL 253 >gi|242073788|ref|XP_002446830.1| hypothetical protein SORBIDRAFT_06g023330 [Sorghum bicolor] gi|241938013|gb|EES11158.1| hypothetical protein SORBIDRAFT_06g023330 [Sorghum bicolor] Length = 879 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 18/36 (50%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F+ V I G +G+ +++ A+ AA L+ Sbjct: 718 QFSTEVLIFGEKVGEGVGKTRKEAQWQAADTSLRNL 753 >gi|293334879|ref|NP_001167729.1| hypothetical protein LOC100381417 [Zea mays] gi|223943645|gb|ACN25906.1| unknown [Zea mays] Length = 178 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 16/31 (51%) Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 TV V + G+ + K+ A+++AA L Sbjct: 38 TVEVLVDGIQIGVAQNPQKKMAQKLAARNAL 68 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 8/74 (10%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMDCSKRA 210 + L + + P+Y+ GP H RF V ++ + M S + Sbjct: 96 RQTLNDICLRRQWPMPQYRCINEGGPAHAKRFVYAVRVNTSDSGWTDECIGEPM-PSVKK 154 Query: 211 AEQVAAAEVLKREG 224 A+ AA +L+ Sbjct: 155 AKDSAAVLLLELLN 168 >gi|195356071|ref|XP_002044505.1| GM13239 [Drosophila sechellia] gi|194131807|gb|EDW53741.1| GM13239 [Drosophila sechellia] Length = 101 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 E P Y+ G H+ FT+ + G +K+ A+++AA + R Sbjct: 39 EMCVQLRWPPPLYETEAEVGLPHERVFTIACSVLEHRV-MGKGTTKKIAKRLAAHSMFVR 97 Query: 223 E 223 Sbjct: 98 L 98 >gi|328766294|gb|EGF76349.1| hypothetical protein BATDEDRAFT_92769 [Batrachochytrium dendrobatidis JAM81] Length = 334 Score = 43.4 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 44/148 (29%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S + ++RLEFLGD +L L L+ G LS LV + + V+ + Sbjct: 6 SGTGKLGSMFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 65 Query: 91 LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 + L +IR + + + + S + +W + Sbjct: 66 IGLVKYIRHTDMTMEAAIGRFATWVQGYLASESSTSLPISTSATQIASARMFWNKGNTAP 125 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ L + Sbjct: 126 KTAGDVYESMLGAVFVDSQFDIHCVQSM 153 >gi|158289196|ref|XP_310950.4| AGAP000185-PA [Anopheles gambiae str. PEST] gi|157018938|gb|EAA06512.4| AGAP000185-PA [Anopheles gambiae str. PEST] Length = 631 Score = 43.4 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 ++GP H P FT+ V + G G SK+ Sbjct: 23 SQTGPVHAPIFTISVVVDGQKF-VGTGPSKK 52 >gi|332246794|ref|XP_003272537.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform 2 [Nomascus leucogenys] Length = 662 Score = 43.4 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V VE+ G+ G SK A+Q AA L Sbjct: 214 FSVSVELDGVVCPAGTANSKTEAKQQAALSAL 245 >gi|332246792|ref|XP_003272536.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform 1 [Nomascus leucogenys] Length = 580 Score = 43.4 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V VE+ G+ G SK A+Q AA L Sbjct: 142 FSVSVELDGVVCPAGTANSKTEAKQQAALSAL 173 >gi|159123457|gb|EDP48576.1| hypothetical protein AFUB_080110 [Aspergillus fumigatus A1163] Length = 620 Score = 43.4 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Query: 1 MSALRYSTL-EKRIGYAFANRSLLEKALTHS----SISHSYQESYERLEFLGDRILGLLI 55 M+ + + + R+GY F N ++L ALT + + + + RL LG+ ++ L+ Sbjct: 1 MATTKDARFVQDRLGYRFKNEAILRLALTAAGKGGAEDGANKRGNSRLAHLGNFLMQFLL 60 Query: 56 STLLF 60 + + F Sbjct: 61 AWIGF 65 >gi|159121927|gb|EDP47059.1| hypothetical protein AFUB_102760 [Aspergillus fumigatus A1163] Length = 603 Score = 43.4 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Query: 1 MSALRYSTL-EKRIGYAFANRSLLEKALTHS----SISHSYQESYERLEFLGDRILGLLI 55 M+ + + + R+GY F N ++L ALT + + + + RL LG+ ++ L+ Sbjct: 1 MATTKDARFVQDRLGYRFKNEAILRLALTAAGKGGAEDGANKRGNSRLAHLGNFLMQFLL 60 Query: 56 STLLF 60 + + F Sbjct: 61 AWIGF 65 >gi|114663874|ref|XP_001151022.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform 2 [Pan troglodytes] Length = 583 Score = 43.4 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V VE+ G+ G SK A+Q AA L Sbjct: 145 FSVSVELDGVVCPAGTANSKTEAKQQAALSAL 176 >gi|114663872|ref|XP_001150748.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform 1 [Pan troglodytes] Length = 665 Score = 43.4 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V VE+ G+ G SK A+Q AA L Sbjct: 217 FSVSVELDGVVCPAGTANSKTEAKQQAALSAL 248 >gi|114663876|ref|XP_511140.2| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes] Length = 567 Score = 43.4 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V VE+ G+ G SK A+Q AA L Sbjct: 145 FSVSVELDGVVCPAGTANSKTEAKQQAALSAL 176 >gi|297799968|ref|XP_002867868.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297313704|gb|EFH44127.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 854 Score = 43.0 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 20/42 (47%) Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 ++ + +++ + + K+ +EQ AA L++ GI Sbjct: 34 SNECLYRCHLQLPEFSVVSNVFKRKKDSEQSAAELALEKLGI 75 >gi|15150473|ref|NP_150468.1| LSDV034 putative PKR inhibitor [Lumpy skin disease virus NI-2490] gi|15149045|gb|AAK84995.1| LSDV034 putative PKR inhibitor [Lumpy skin disease virus NI-2490] gi|22595569|gb|AAN02602.1| putative PKR inhibitor [Lumpy skin disease virus NW-LW] Length = 177 Score = 43.0 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 28/119 (23%), Gaps = 5/119 (4%) Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155 + + + S + D + + Sbjct: 47 YKLHNDGFIFMIRSNPPKWFKK-----NSIDNDDNENNDTKKLNKSFSDTIPYYKIVLWK 101 Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + + +F Y G P F V ISG+ + +K+ A+Q Sbjct: 102 EKNPCSAINEYCQFTSRDWYINISSCGNGRKPMFLASVIISGIKFFPEIGNTKKEAKQK 160 >gi|138854|sp|P27586|NSP3_ROTPC RecName: Full=Non-structural protein 3; Short=NSP3; Contains: RecName: Full=p38; Contains: RecName: Full=p8 gi|333308|gb|AAA47087.1| NS34 protein [Porcine rotavirus C] Length = 402 Score = 43.0 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 18/29 (62%) Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 G A A SK+ A+++AA ++L + G+ Sbjct: 374 GSAEAVAKGRSKKEAKRIAAKDILDQIGL 402 >gi|149511238|ref|XP_001519380.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 268 Score = 43.0 bits (99), Expect = 0.029, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G +++AA AA + L+ Sbjct: 106 KIFYVQLTVGNDEFF-GEGKTRQAARHNAAMKALRAL 141 Score = 37.6 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F V + + A S + A+ AA L Sbjct: 1 MFAVQLTLGEQLWA-AEGSSIKKAQHAAATRAL 32 >gi|146420287|ref|XP_001486100.1| hypothetical protein PGUG_01771 [Meyerozyma guilliermondii ATCC 6260] Length = 617 Score = 43.0 bits (99), Expect = 0.029, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 65/219 (29%), Gaps = 22/219 (10%) Query: 19 NRSLLEKALTHSSISHSY------------QESYERLEFLGDRILGLLISTLLFNHFDSA 66 N +L ++ TH S Q E+L G +L + + LL F A Sbjct: 152 NTNLRKRVFTHKSYRQISDFLEADSAEEFAQAHNEKLVLHGRSLLNVALLHLLDKKFPKA 211 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 + ++ + L S+ +++A +L+ ++ + + + + L A Sbjct: 212 QAEDIELMKVRLSSSVVLTKMAMGYNLSQHLKHNISKELSNEGKVLVLLTVFLAYLGALF 271 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 ++ +++K + + + L HD Sbjct: 272 SEGYSMDEICLWIEKLYDPIVAEFDSEHMHSARPLAYSELKFLLDP----HLKFKQSGHD 327 Query: 187 PRFTVVVEISGLAPAQGMDCSKRAA-----EQVAAAEVL 220 P FT G K A E A + L Sbjct: 328 P-FTFKAYYRDTVIGIGSHSDKMMARIVTLENALADKAL 365 >gi|311265930|ref|XP_003130894.1| PREDICTED: double-stranded RNA-specific editase B2-like [Sus scrofa] Length = 899 Score = 43.0 bits (99), Expect = 0.029, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 +Y+ ++GP H P F V V+++GL +G K+ + A L+ Sbjct: 407 QYRTVSQTGPVHAPVFAVAVDVNGLTF-EGTGPIKKKLKMRRAELALR 453 >gi|82469818|gb|ABB77167.1| R2D2 [Drosophila sechellia] Length = 289 Score = 43.0 bits (99), Expect = 0.029, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 5/115 (4%) Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 + + A + + + + +D + RD EL+++ Sbjct: 25 GNGRSKRDAKHLAAANIMRKIQILPGMQSMRMDLSLGDLGEEITNLNRDMLKELRDYCVR 84 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAEVL 220 P +V +SG P F ++ + S K+ A Q AA E+L Sbjct: 85 HDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAIEML 136 Score = 38.8 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 D F VE+ + A G SKR A+ +AAA ++++ I Sbjct: 9 DGGFVCKVELLEIE-ALGNGRSKRDAKHLAAANIMRKIQIL 48 >gi|325181112|emb|CCA15525.1| double stranded RNA binding putative [Albugo laibachii Nc14] Length = 320 Score = 43.0 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 20/50 (40%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++ + + V+ +G A A G SKR A+ +AA L Sbjct: 136 CFQFETKEDERGQKWYHCRVDENGQALAHGKGISKRVAKALAAQSALSLL 185 >gi|17863006|gb|AAL39980.1| SD08006p [Drosophila melanogaster] Length = 460 Score = 43.0 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 39/156 (25%), Gaps = 6/156 (3%) Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 RF + + ++ D + + + + Sbjct: 295 PRGKRFLQCQTLQQICEIWELGDYCRRKQRELKTMGNSGRAEVEPPEALAKRQKLEDAAI 354 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 + + ++ KT+L A P Y+ D F Sbjct: 355 AITDEYDGIICRHMPFLRSTYPSDNHLPKTQLYVHAVKTGKSPPAYETQQC-----DKLF 409 Query: 190 TVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224 + G + + +K+ AEQ AA L G Sbjct: 410 RSICTYDGQRFSSSFWEKNKKQAEQGAALVALLHLG 445 >gi|45549423|ref|NP_572950.2| CG1434 [Drosophila melanogaster] gi|45446950|gb|AAF48360.2| CG1434 [Drosophila melanogaster] gi|162944734|gb|ABY20436.1| GH10289p [Drosophila melanogaster] Length = 473 Score = 43.0 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 39/156 (25%), Gaps = 6/156 (3%) Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 RF + + ++ D + + + + Sbjct: 308 PRGKRFLQCQTLQQICEIWELGDYCRRKQRELKTMGNSGRAEVEPPEALAKRQKLEDAAI 367 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 + + ++ KT+L A P Y+ D F Sbjct: 368 AITDEYDGIICRHMPFLRSTYPSDNHLPKTQLYVHAVKTGKSPPAYETQQC-----DKLF 422 Query: 190 TVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224 + G + + +K+ AEQ AA L G Sbjct: 423 RSICTYDGQRFSSSFWEKNKKQAEQGAALVALLHLG 458 >gi|255970532|gb|ACU45742.1| dicer-like protein 1 [Sporothrix schenckii] Length = 1021 Score = 43.0 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 27/67 (40%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 +YERLE LGD L + + L+ E E V ++ + A E+ Sbjct: 785 FQAGMGRNYERLELLGDSFLKMASTIALYTLAPDKNEFEYHVERMCMICNKNLFNNALEI 844 Query: 92 DLASFIR 98 L +IR Sbjct: 845 GLEEYIR 851 Score = 40.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%) Query: 14 GYAFANRSLLEKALTHSSI--SHSYQESYERL 43 GY F LL A+ H S + SY+RL Sbjct: 990 GYTFTYPRLLRCAVMHPSYPRVYEQLPSYQRL 1021 >gi|328771050|gb|EGF81090.1| hypothetical protein BATDEDRAFT_23768 [Batrachochytrium dendrobatidis JAM81] Length = 380 Score = 43.0 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 46/148 (31%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S + ++RLEFLGD +L L+ L+ G LS LV + + V+ + Sbjct: 52 SGTGKLGSMFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQ 111 Query: 91 LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 + L +IR + + T+ + S + +W + Sbjct: 112 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARMFWNKGNTAP 171 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ L + Sbjct: 172 KTAGDVYESMLGAVFVDSQFDIHCVQSM 199 >gi|222619325|gb|EEE55457.1| hypothetical protein OsJ_03618 [Oryza sativa Japonica Group] Length = 351 Score = 43.0 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 1/49 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223 T R GP H RF VV + G A + + AE AA L Sbjct: 105 YQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSL 153 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 2/50 (4%) Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAP--AQGMDCSKRAAEQVAAAEVL 220 P +GP H P F V ++G+ + S + A +AA L Sbjct: 17 PPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNIAAKAAL 66 >gi|218189128|gb|EEC71555.1| hypothetical protein OsI_03907 [Oryza sativa Indica Group] Length = 1030 Score = 43.0 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 1/49 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223 T R GP H RF VV + G A + + AE AA L Sbjct: 105 YQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSL 153 >gi|148679660|gb|EDL11607.1| mCG11408 [Mus musculus] Length = 243 Score = 43.0 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F+V ++ GL G SK A+Q AA L+ Sbjct: 40 FSVCADLDGLVCPAGTGSSKLEAKQQAALSALQ 72 >gi|254675158|ref|NP_083704.1| adenosine deaminase domain-containing protein 2 [Mus musculus] gi|187952769|gb|AAI37981.1| Adad2 protein [Mus musculus] Length = 561 Score = 43.0 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F+V ++ GL G SK A+Q AA L+ Sbjct: 123 FSVCADLDGLVCPAGTGSSKLEAKQQAALSALQ 155 >gi|75251129|sp|Q5N8Z0|DRB1_ORYSJ RecName: Full=Double-stranded RNA-binding protein 1; AltName: Full=dsRNA-binding protein 1 gi|56785214|dbj|BAD82066.1| putative dsRNA-binding protein ODB1 [Oryza sativa Japonica Group] Length = 441 Score = 43.0 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 1/49 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223 T R GP H RF VV + G A + + AE AA L Sbjct: 105 YQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSL 153 Score = 38.4 bits (87), Expect = 0.86, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%) Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAP--AQGMDCSKRAAEQVAAAEV 219 P +GP H P F V ++G+ + S + A +AA Sbjct: 17 PPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNIAAKAA 65 >gi|81905359|sp|Q9D5P4|ADAD2_MOUSE RecName: Full=Adenosine deaminase domain-containing protein 2 gi|12853260|dbj|BAB29697.1| unnamed protein product [Mus musculus] Length = 478 Score = 43.0 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F+V ++ GL G SK A+Q AA L+ Sbjct: 40 FSVCADLDGLVCPAGTGSSKLEAKQQAALSALQ 72 >gi|82469802|gb|ABB77159.1| R2D2 [Drosophila lucipennis] Length = 299 Score = 43.0 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 5/80 (6%) Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202 + RD EL+++ P ++ +SG + P F ++ + Sbjct: 71 MNDLCEELTNLNRDMLKELRDYCVRHDMPLPSIEIVQQSGTPNAPEFVACCTVASIVR-- 128 Query: 203 GMDCS--KRAAEQVAAAEVL 220 S K+ A Q AA E+L Sbjct: 129 -YGKSDKKKDARQRAAIEML 147 Score = 39.5 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D + V + + + G SKR A+ +AAA +L++ Sbjct: 17 DGGYVCKVVLMEIE-SYGNGRSKRDAKHLAAANILRKI 53 >gi|50555369|ref|XP_505093.1| YALI0F06732p [Yarrowia lipolytica] gi|49650963|emb|CAG77900.1| YALI0F06732p [Yarrowia lipolytica] Length = 207 Score = 43.0 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 19/39 (48%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 SLL + LTH S + E+L F+G + + + + Sbjct: 88 SLLLQVLTHKSFAGGLPSHNEKLAFVGRKFFPVSVLSHN 126 >gi|330945754|gb|EGH47188.1| ribonuclease III [Pseudomonas syringae pv. pisi str. 1704B] Length = 164 Score = 43.0 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Query: 54 LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113 ++ LF F A+EG+LS LV ET + +AR DL ++R+ S K S Sbjct: 7 WLAEALFERFPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRES 66 Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGV 171 I AD +E+LI A+YLD G+E A V + +D KT LQE+ ++ Sbjct: 67 ILADALEALIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACE 126 Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCS 207 P Y+V G H F V EI+ L ++G S Sbjct: 127 LPRYEVVDIQGEPHCRTFFVECEINLLNEKSRGQGVS 163 >gi|293336145|ref|NP_001169453.1| hypothetical protein LOC100383324 [Zea mays] gi|224029475|gb|ACN33813.1| unknown [Zea mays] Length = 459 Score = 43.0 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 4/46 (8%) Query: 181 SGPDHDPRFTVVVEISGLAPA---QGMDCSKRAAEQVAAAEVLKRE 223 GP H P F V ++G + +G S + A +AA Sbjct: 25 EGPAHAPLFRATVVVNGERFSSRDEGE-KSLKEAYNLAAMAAFDNL 69 Score = 41.8 bits (96), Expect = 0.075, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 18/68 (26%), Gaps = 1/68 (1%) Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215 + K G G H P F V I G + + AE VA Sbjct: 94 PYKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVA 153 Query: 216 AAEVLKRE 223 A L Sbjct: 154 AKVALMSL 161 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%) Query: 189 FTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKREG 224 F VEI G+ G +K+ AE AA + Sbjct: 209 FVSTVEIRGVTF-HGKPGNTKKQAEMNAAKSAFEHFK 244 >gi|221114347|ref|XP_002163095.1| PREDICTED: similar to SON DNA-binding protein isoform F (predicted) [Hydra magnipapillata] Length = 629 Score = 43.0 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 1/81 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 A + + + L E + P+Y F G + F + V ++ + + Sbjct: 545 PPAPVANINGKHPVSALAELCVKRKLGIPDYTCVFEHGLAQNKNFLMKVTVANVDYQASV 604 Query: 205 DC-SKRAAEQVAAAEVLKREG 224 +K+ A+ AA L+ G Sbjct: 605 ASPNKKHAKANAAIVALRAMG 625 >gi|195339009|ref|XP_002036114.1| r2d2 [Drosophila sechellia] gi|194129994|gb|EDW52037.1| r2d2 [Drosophila sechellia] Length = 311 Score = 43.0 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 5/115 (4%) Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 + + A + + + + +D + RD EL+++ Sbjct: 47 GNGRSKRDAKHLAAANIMRKIQILPGMQSMRMDLSLGDLGEEITNLNRDMLKELRDYCVR 106 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAEVL 220 P +V +SG P F ++ + S K+ A Q AA E+L Sbjct: 107 HDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAIEML 158 Score = 39.9 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 H T T+ D F VE+ + A G SKR A+ +AAA ++++ I Sbjct: 11 HEFCAKTKNTPPTYNFINGEDGGFVCKVELLEIE-ALGNGRSKRDAKHLAAANIMRKIQI 69 Query: 226 W 226 Sbjct: 70 L 70 >gi|195577381|ref|XP_002078549.1| r2d2 [Drosophila simulans] gi|82469850|gb|ABB77183.1| R2D2 [Drosophila simulans] gi|194190558|gb|EDX04134.1| r2d2 [Drosophila simulans] Length = 311 Score = 43.0 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 5/115 (4%) Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 + + A + + + + D + RD EL+++ Sbjct: 47 GNGRSKRDAKHLAAANIMRKIQMLPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVR 106 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAEVL 220 P +V +SG P F ++ + S K+ A Q AA E+L Sbjct: 107 HDMPLPRIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAIEML 158 Score = 39.5 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H T T+ D F VE+ L A G SKR A+ +AAA ++++ Sbjct: 11 HEFCAKTNNTPPTYNFIKGEDGGFVCKVELLELE-ALGNGRSKRDAKHLAAANIMRKI 67 >gi|328769139|gb|EGF79183.1| hypothetical protein BATDEDRAFT_25727 [Batrachochytrium dendrobatidis JAM81] Length = 380 Score = 43.0 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 37/91 (40%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S + ++RLEFLGD +L L L+ G LS LV + + V+ + Sbjct: 52 SGTGKLGSIFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQ 111 Query: 91 LDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + L +IR + + T+ + S Sbjct: 112 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLAS 142 >gi|255545984|ref|XP_002514052.1| conserved hypothetical protein [Ricinus communis] gi|223547138|gb|EEF48635.1| conserved hypothetical protein [Ricinus communis] Length = 412 Score = 43.0 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKRE 223 T + GP H+P F V ++ + +++AAEQ A L Sbjct: 34 YETIKEGPSHEPSFRSTVIVNDIRYDSLPGFLNRKAAEQSAVEVALMEL 82 >gi|82469840|gb|ABB77178.1| R2D2 [Drosophila simulans] Length = 311 Score = 43.0 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 5/115 (4%) Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 + + A + + + + D + RD EL+++ Sbjct: 47 GNGRSKRDAKHLAAANIMRKIQMLPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVR 106 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAEVL 220 P +V +SG P F ++ + S K+ A Q AA E+L Sbjct: 107 HDMPLPXIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAIEML 158 Score = 39.5 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H T T+ D F VE+ L A G SKR A+ +AAA ++++ Sbjct: 11 HEFCAKTNNTPPTYNFIKGEDGGFVCKVELLELE-ALGNGRSKRDAKHLAAANIMRKI 67 >gi|242045250|ref|XP_002460496.1| hypothetical protein SORBIDRAFT_02g029450 [Sorghum bicolor] gi|241923873|gb|EER97017.1| hypothetical protein SORBIDRAFT_02g029450 [Sorghum bicolor] Length = 123 Score = 43.0 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 18/61 (29%), Gaps = 7/61 (11%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAEQVAAAEVLKR 222 V GPDH PRF V + S R AE AA L R Sbjct: 1 MYKNQLLTSYVCTPEGPDHTPRFRAAVTFNSETF---EGPSGCTTLRQAEHAAAEVTLAR 57 Query: 223 E 223 Sbjct: 58 L 58 >gi|328767757|gb|EGF77805.1| hypothetical protein BATDEDRAFT_27056 [Batrachochytrium dendrobatidis JAM81] Length = 380 Score = 43.0 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 46/148 (31%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S + ++RLEFLGD +L L+ L+ G LS LV + + V+ + Sbjct: 52 SGTGKLGSMFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQ 111 Query: 91 LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 + L +IR + + T+ + S + +W + Sbjct: 112 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARMFWNKGNTAP 171 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ L + Sbjct: 172 KTAGDVYESMLGAVFVDSQFDIHCVQSM 199 >gi|297734269|emb|CBI15516.3| unnamed protein product [Vitis vinifera] Length = 1057 Score = 43.0 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 19/36 (52%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + F V +GL A SK+ AE+ AAA+ L+ Sbjct: 991 NNMFRSTVIFNGLQFAGQPCSSKKLAEKDAAAKALE 1026 >gi|225456053|ref|XP_002277625.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1157 Score = 43.0 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 19/36 (52%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + F V +GL A SK+ AE+ AAA+ L+ Sbjct: 1091 NNMFRSTVIFNGLQFAGQPCSSKKLAEKDAAAKALE 1126 >gi|198426942|ref|XP_002131661.1| PREDICTED: similar to Zfr protein [Ciona intestinalis] Length = 1004 Score = 43.0 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-----GLAPAQGMDCSKRAAEQVAAAE 218 + T GP+H F ++++ + A +K+ A V A Sbjct: 366 NQFCQREHTSPDFKHETHGPEHARIFVCELKLNVSSVQKVLLASERGSNKKQATAVCALS 425 Query: 219 VLKRE 223 ++++ Sbjct: 426 MIRQL 430 >gi|224097989|ref|XP_002191539.1| PREDICTED: transcription factor NRF [Taeniopygia guttata] Length = 720 Score = 43.0 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 402 NRSWRCQVYLQDHCLAEGFG-TKKTSKHAAAEEALKIL 438 >gi|242775084|ref|XP_002478573.1| 60S ribosomal protein L3 [Talaromyces stipitatus ATCC 10500] gi|218722192|gb|EED21610.1| 60S ribosomal protein L3 [Talaromyces stipitatus ATCC 10500] Length = 384 Score = 43.0 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 47/161 (29%), Gaps = 4/161 (2%) Query: 65 SAKEGELSVRFNSLVSAE-TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 +S+V + + + DL + V++++ Sbjct: 188 RPNTHWRKSIASSVVHGDIFGEPDLKTKNPKYVRPQLPDLESLPGVTAEKATSTFVQAVV 247 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 +YL G A F ++ R L K +L H + P K+ + Sbjct: 248 GGIYLHAGRPAAKRFFKEHIVSRHLDMSKLFSFTQPARDLATLCHRENIEPPVAKIISET 307 Query: 182 GPD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 G P F V V +G S A AA LK Sbjct: 308 GRHSRHPVFNVGVFSGQDKLGEGSGASLIEARTRAAVAALK 348 >gi|168057245|ref|XP_001780626.1| HEN1 protein [Physcomitrella patens subsp. patens] gi|162667894|gb|EDQ54512.1| HEN1 protein [Physcomitrella patens subsp. patens] Length = 951 Score = 43.0 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%) Query: 187 PRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P F + + G K+ AEQ AA L++ GI Sbjct: 40 PMFACKLHLPDGTTIQSNSFRRKKDAEQDAALHALQKMGI 79 Score = 39.1 bits (89), Expect = 0.46, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 47/201 (23%), Gaps = 22/201 (10%) Query: 40 YERLEFL------GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 ER FL GD IL + ST + LS ++ Sbjct: 302 NERASFLVGHAIDGDAILATVGSTWTSDGRCIYDNFTLSCFHRLMLGRN---------PW 352 Query: 94 ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 ++ L + + +A + +L D + + Sbjct: 353 GAYKLSRRSLLVADLPKVYTCRAHWQGASPKSLLADFCHQHRLSEAQYTCNDTQESCNST 412 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-------LAPAQGMDC 206 E+ G F V + + G Sbjct: 413 AGGHSLEIGHTKGLMSMNNNGISKQGNPGSSKQGPFQCKVRVGSAGNKAPTYFQSDGFFR 472 Query: 207 SKRAAEQVAAAEVLKREGIWT 227 S+ A Q AA L G W+ Sbjct: 473 SRNDAIQSAALNALLSYGRWS 493 >gi|297485148|ref|XP_002694788.1| PREDICTED: testis nuclear RNA-binding protein-like [Bos taurus] gi|296478213|gb|DAA20328.1| testis nuclear RNA-binding protein-like [Bos taurus] Length = 597 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V VE+ G+ G SK A+Q AA L Sbjct: 159 FSVSVELDGVVCPPGTANSKLEAKQQAALSAL 190 >gi|297461712|ref|XP_873139.3| PREDICTED: adenosine deaminase domain containing 2 [Bos taurus] Length = 597 Score = 42.6 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V VE+ G+ G SK A+Q AA L Sbjct: 159 FSVSVELDGVVCPPGTANSKLEAKQQAALSAL 190 >gi|320170569|gb|EFW47468.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 871 Score = 42.6 bits (98), Expect = 0.037, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Query: 5 RYSTLEKRIGYAFANRSLLEKALT----HSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + +E +G F + L ALT H ++Y+ L+F+GD +L + L Sbjct: 703 KLREVEAILGVRFNEPAWLAMALTADNSHP-AILPVSKTYQGLDFVGDTVLKYSVQKFLM 761 Query: 61 N 61 + Sbjct: 762 H 762 Score = 36.4 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKA-LT 28 + +E IGY F N +LL A LT Sbjct: 392 DVARIETAIGYKFKNPALLATAVLT 416 >gi|242092788|ref|XP_002436884.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor] gi|241915107|gb|EER88251.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor] Length = 243 Score = 42.6 bits (98), Expect = 0.037, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 1/42 (2%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRA 210 V GP H P FT V ++ G SK+ Sbjct: 14 HCPKPEFVHTCEGPVHSPVFTATVTLNEKKFCAGEGTPSKKE 55 >gi|328770010|gb|EGF80052.1| hypothetical protein BATDEDRAFT_24776 [Batrachochytrium dendrobatidis JAM81] Length = 380 Score = 42.6 bits (98), Expect = 0.038, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 37/91 (40%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S + ++RLEFLGD +L L+ L+ G LS LV + + V+ + Sbjct: 52 SGTGKLGSMFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQ 111 Query: 91 LDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 + L +IR + + + + S Sbjct: 112 IGLVKYIRHTDMTMEAAIGRFATWVQGYLAS 142 >gi|322782637|gb|EFZ10516.1| hypothetical protein SINV_13804 [Solenopsis invicta] Length = 401 Score = 42.6 bits (98), Expect = 0.038, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%) Query: 186 DPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGIW 226 + F VV + G + +K+ AEQ AA L GI Sbjct: 348 NKLFCSVVTVDGRKYGSSFWEKNKKWAEQGAALVCLYFLGII 389 >gi|149411995|ref|XP_001513167.1| PREDICTED: similar to LRRG00118 [Ornithorhynchus anatinus] Length = 576 Score = 42.6 bits (98), Expect = 0.038, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P F + G+ G+ +K+ A AA L Sbjct: 126 PYFAFCAVVDGIQYKTGLGQNKKEARSNAAKLALDEL 162 >gi|238497846|ref|XP_002380158.1| RNA helicase/RNAse III, putative [Aspergillus flavus NRRL3357] gi|220693432|gb|EED49777.1| RNA helicase/RNAse III, putative [Aspergillus flavus NRRL3357] Length = 1339 Score = 42.6 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 FA+ + A+ S +Y+R EFLGD IL ++S LF + EG L+ Sbjct: 925 FADIQHVITAIMAPSAQ--GVTNYQRYEFLGDSILKYIVSCQLFFQNLNWPEGFLTEGRT 982 Query: 77 SLVSAETCSQVARELDLASFIR 98 ++V ++ A + L SFI Sbjct: 983 TIVQNPRLTRAALDAGLDSFII 1004 >gi|17533821|ref|NP_494501.1| hypothetical protein F39E9.7 [Caenorhabditis elegans] Length = 136 Score = 42.6 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 1/69 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + +L E+A + P ++ F + +G SK A++ A Sbjct: 34 NPVAQLNEYAQKFYKKYPTFEFVKEQAVGKHRVFIIQATFEDKTL-EGRGPSKMIAKRAA 92 Query: 216 AAEVLKREG 224 A +L+ G Sbjct: 93 AEAILESIG 101 >gi|221129317|ref|XP_002161468.1| PREDICTED: similar to SON DNA binding protein [Hydra magnipapillata] Length = 173 Score = 42.6 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 1/81 (1%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 A + + + L E + P+Y F G + F + V ++ + + Sbjct: 89 PPAPVANINGKHPVSALAELCVKRKLGIPDYTCVFEHGLAQNKNFLMKVTVANVDYQASV 148 Query: 205 DC-SKRAAEQVAAAEVLKREG 224 +K+ A+ AA L+ G Sbjct: 149 ASPNKKHAKANAAIVALRAMG 169 >gi|169607859|ref|XP_001797349.1| hypothetical protein SNOG_06991 [Phaeosphaeria nodorum SN15] gi|111064522|gb|EAT85642.1| hypothetical protein SNOG_06991 [Phaeosphaeria nodorum SN15] Length = 843 Score = 42.6 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 12/98 (12%) Query: 6 YSTLEKRIGYAFANRSLLEKAL-----THSSI----SHSYQESYERLEFLGDRILGLLIS 56 LE R+GY F NR +AL HS + + RL LGDR+L L + Sbjct: 102 LGALEVRLGYTFQNRMTGIEALKVTGNVHSLYYDGAVYETGMNN-RLALLGDRVLSLALC 160 Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94 + F G ++ + VS + +L L Sbjct: 161 EIWF--QTDHPNGGYALMSSQTVSRAALAVTGHKLGLH 196 >gi|195434340|ref|XP_002065161.1| GK14818 [Drosophila willistoni] gi|194161246|gb|EDW76147.1| GK14818 [Drosophila willistoni] Length = 303 Score = 42.6 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 5/149 (3%) Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + +D V D+ +F + L A L + Sbjct: 10 LQEFCAKTKNGPPEYNYIDGEDGGFVCKASLLDMEAFGNGRSKRDAKHLAAVNILRKIRK 69 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + G + + RD EL+++ P ++ +SG + P F Sbjct: 70 LPGCSEALNDTDDSNELTNLNRDMLKELRDYCVRHEMPLPVIEIVQQSGSPNAPEFVACC 129 Query: 194 EISGLAPAQGMDCS--KRAAEQVAAAEVL 220 ++ + S K+ A Q AA E+L Sbjct: 130 TVASITR---YGKSDKKKDARQRAAIEML 155 Score = 37.6 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D F + + A G SKR A+ +AA +L++ Sbjct: 31 DGGFVCKASLLDME-AFGNGRSKRDAKHLAAVNILRKI 67 >gi|158339696|ref|YP_001520703.1| hypothetical protein AM1_A0044 [Acaryochloris marina MBIC11017] gi|158309937|gb|ABW31553.1| hypothetical protein AM1_A0044 [Acaryochloris marina MBIC11017] Length = 157 Score = 42.6 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 48/133 (36%), Gaps = 6/133 (4%) Query: 90 ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 +L ++ + D + + + + +++ + + Q + Sbjct: 18 QLGFLDYLYPNIDPEDALIRILERARNRAIRKAEQQVHILHPRQEEAEQPETSPDQPISQ 77 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + ++ +LQE + P Y+ + S F +V+ GL G SK+ Sbjct: 78 VDEQVKNPIGQLQELCQKQQISLPRYEFSEISEG-----FRCLVQSMGLQ-GVGEGASKK 131 Query: 210 AAEQVAAAEVLKR 222 A+ AA +LKR Sbjct: 132 KAKMGAAEMLLKR 144 >gi|328774462|gb|EGF84499.1| hypothetical protein BATDEDRAFT_22607 [Batrachochytrium dendrobatidis JAM81] Length = 334 Score = 42.6 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 45/148 (30%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S + ++RLEFLGD +L L L+ G LS LV + + V+ + Sbjct: 6 SGTGKLGSMFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 65 Query: 91 LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 + L +IR + + T+ + S + +W + Sbjct: 66 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARMFWNKGNTAP 125 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ L + Sbjct: 126 KTAGDVYESMLGAVFVDSQFDIHCVQSM 153 >gi|218675756|gb|AAI69284.2| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [synthetic construct] Length = 413 Score = 42.6 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V + G A GM S K+ A+ AA + Sbjct: 12 CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64 >gi|150456419|ref|NP_031868.2| ATP-dependent RNA helicase A [Mus musculus] Length = 1383 Score = 42.6 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V + G A GM S K+ A+ AA + Sbjct: 12 CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64 >gi|157821633|ref|NP_001100654.1| ATP-dependent RNA helicase A [Rattus norvegicus] gi|149058390|gb|EDM09547.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 (predicted) [Rattus norvegicus] Length = 1174 Score = 42.6 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V + G A GM S K+ A+ AA + Sbjct: 12 CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64 >gi|148707490|gb|EDL39437.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_b [Mus musculus] Length = 1384 Score = 42.6 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V + G A GM S K+ A+ AA + Sbjct: 13 CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 65 >gi|148707489|gb|EDL39436.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_a [Mus musculus] Length = 1174 Score = 42.6 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V + G A GM S K+ A+ AA + Sbjct: 12 CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64 >gi|116283679|gb|AAH33911.1| Dhx9 protein [Mus musculus] Length = 198 Score = 42.6 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V + G A GM S K+ A+ AA + Sbjct: 12 CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64 >gi|159163361|pdb|1WHQ|A Chain A, Solution Structure Of The N-Terminal Dsrbd From Hypothetical Protein Bab28848 Length = 99 Score = 42.6 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V + G A GM S K+ A+ AA + Sbjct: 16 CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 68 >gi|58047678|gb|AAH89159.1| Dhx9 protein [Mus musculus] Length = 459 Score = 42.6 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V + G A GM S K+ A+ AA + Sbjct: 12 CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64 >gi|2688940|gb|AAC05301.1| RNA helicase A [Mus musculus] Length = 161 Score = 42.6 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V + G A GM S K+ A+ AA + Sbjct: 12 CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64 >gi|74202542|dbj|BAE24846.1| unnamed protein product [Mus musculus] Length = 735 Score = 42.6 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V + G A GM S K+ A+ AA + Sbjct: 12 CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64 >gi|71153505|sp|O70133|DHX9_MOUSE RecName: Full=ATP-dependent RNA helicase A; AltName: Full=DEAH box protein 9; Short=mHEL-5; AltName: Full=Nuclear DNA helicase II; Short=NDH II Length = 1380 Score = 42.6 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V + G A GM S K+ A+ AA + Sbjct: 12 CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64 >gi|12850774|dbj|BAB28848.1| unnamed protein product [Mus musculus] Length = 265 Score = 42.6 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V + G A GM S K+ A+ AA + Sbjct: 12 CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64 >gi|313224320|emb|CBY20109.1| unnamed protein product [Oikopleura dioica] Length = 348 Score = 42.6 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 21/193 (10%), Positives = 54/193 (27%), Gaps = 13/193 (6%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 + ++ LG+ + L + ++ ET Sbjct: 11 YARENNKN----WTLGEEWDATPCTLLSEIAGKAGGLKSQLDYAFRQMTRETIEDNTHSQ 66 Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 + + + + + + + G+ +K +S Sbjct: 67 HIFECQCSFAGMITSGSNTKKKNAKHLASEYMLRSLQERGMVKGLRVPEK---PFLGESD 123 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRA 210 + ++L E+ + P + +F + I+ L GM SK+ Sbjct: 124 DNFDNPTSKLFEFVQIRGIEKPVFWDDMYGT-----QFKMTCTIASLKLESFGMCSSKKQ 178 Query: 211 AEQVAAAEVLKRE 223 A++ A +L++ Sbjct: 179 AKREACRHMLEKL 191 >gi|328769566|gb|EGF79610.1| hypothetical protein BATDEDRAFT_26082 [Batrachochytrium dendrobatidis JAM81] Length = 334 Score = 42.6 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 45/148 (30%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S + ++RLEFLGD +L L L+ G LS LV + + V+ + Sbjct: 6 SGTGKLGSIFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 65 Query: 91 LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 + L +IR + + T+ + S + +W + Sbjct: 66 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTSLPISTSATQIASARLFWNKGNTAP 125 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ L + Sbjct: 126 KTAGDVYESMLGAVFVDSQFDIHCVQSM 153 >gi|158296416|ref|XP_316826.3| AGAP000856-PA [Anopheles gambiae str. PEST] gi|157015286|gb|EAA12065.3| AGAP000856-PA [Anopheles gambiae str. PEST] Length = 469 Score = 42.6 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%) Query: 186 DPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225 D F + G + +KR AEQ AA L + G+ Sbjct: 415 DKLFRATIRFDGQRYTSSFWEKNKRYAEQAAALVCLLKRGV 455 >gi|238878780|gb|EEQ42418.1| conserved hypothetical protein [Candida albicans WO-1] Length = 404 Score = 42.6 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 15/34 (44%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P+F V + +G+ S + A+ A+ L Sbjct: 333 PQFLAGVFVGNDKIGEGIGSSLKEAQIRASINSL 366 >gi|68476619|ref|XP_717602.1| likely mitochondrial ribosomal protein MRPL3 [Candida albicans SC5314] gi|68476766|ref|XP_717528.1| likely mitochondrial ribosomal protein MRPL3 [Candida albicans SC5314] gi|46439242|gb|EAK98562.1| likely mitochondrial ribosomal protein MRPL3 [Candida albicans SC5314] gi|46439319|gb|EAK98638.1| likely mitochondrial ribosomal protein MRPL3 [Candida albicans SC5314] Length = 404 Score = 42.6 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 15/34 (44%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P+F V + +G+ S + A+ A+ L Sbjct: 333 PQFLAGVFVGNDKIGEGIGSSLKEAQIRASINSL 366 >gi|324502539|gb|ADY41117.1| Protein SON [Ascaris suum] Length = 1051 Score = 42.6 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQ 213 + + L E K P++ SGP ++ RFT ++G+ SK+ + Sbjct: 973 KHPVSMLMELCSKKHWPPPQFTCIE-SGPSNNRRFTWKAVVNGVEYEPIASSASKKTGKA 1031 Query: 214 VAAAEVLKREGI 225 A VL+ G+ Sbjct: 1032 QVCAVVLQSLGL 1043 >gi|39965953|ref|XP_365151.1| hypothetical protein [Magnaporthe oryzae 70-15] gi|145015378|gb|EDJ99914.1| predicted protein [Magnaporthe oryzae 70-15] Length = 147 Score = 42.6 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 13/148 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHS------SISH--SYQESYERLEFLGDRILGLLIST 57 ++ +IG+ F N+ L ++ALT + S + + + L +GD IL + + Sbjct: 5 IEGIQTKIGHTFGNQRLCDEALTAAGVTLRMSATSQVHHLDGNAALALIGDGILQIGVG- 63 Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 L + +GE S R ++VS + + + L + + + +A Sbjct: 64 -LRSRGLGESKGEASDRLKNIVSNKNLASIFDTAQLGPHVIGNPSQW---GAISAKTKAT 119 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQ 145 VVE+L+ A+Y+D GIE A + + Sbjct: 120 VVEALLGAVYVDAGIEAAFAVMRHLQIE 147 >gi|296087161|emb|CBI33535.3| unnamed protein product [Vitis vinifera] Length = 333 Score = 42.6 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 1/79 (1%) Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 + + + + T G H P+F V + G Sbjct: 9 CPAPSSTRLPEHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSP 68 Query: 204 MDCS-KRAAEQVAAAEVLK 221 S ++AAEQ A L+ Sbjct: 69 NTFSHRKAAEQDVARLALE 87 Score = 42.2 bits (97), Expect = 0.048, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 17/34 (50%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P F + +G+ +K+ AEQ+AA V+ Sbjct: 136 PVFVSSLVFNGVTYTGDAGRNKKEAEQLAARTVI 169 >gi|90077408|dbj|BAE88384.1| unnamed protein product [Macaca fascicularis] Length = 437 Score = 42.6 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 5/78 (6%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-----GMD 205 + + + + + GPDH+ F + I + G Sbjct: 173 HGNWTLENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFARGHG 232 Query: 206 CSKRAAEQVAAAEVLKRE 223 +K+ A Q A ++++ Sbjct: 233 SNKKLAAQSCALSLVRQL 250 Score = 41.8 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V++ G GM S K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64 >gi|50897083|dbj|BAD34722.1| Dicer-related RNase III protein Dcr1p [Tetrahymena thermophila] Length = 1450 Score = 42.6 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 13/26 (50%) Query: 10 EKRIGYAFANRSLLEKALTHSSISHS 35 + I Y F N LL++ THSS Sbjct: 1157 QNSINYKFNNIGLLQQVFTHSSYKQD 1182 >gi|126306309|ref|XP_001366536.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Monodelphis domestica] Length = 1256 Score = 42.6 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V + G GM S K+ A+ AA + Sbjct: 12 CGKRKMTPTYEIRAVGNKNRQKFMCEVRVEGFNY-TGMGNSTNKKDAQSNAARD 64 >gi|255719938|ref|XP_002556249.1| KLTH0H08624p [Lachancea thermotolerans] gi|238942215|emb|CAR30387.1| KLTH0H08624p [Lachancea thermotolerans] Length = 238 Score = 42.6 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%) Query: 7 STLEKRIGYAFANRSL----LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 + K++ A N SL + + LTH S +H + E+L LG + L S Sbjct: 63 ENVRKQLNLAKHNISLSDDIILQCLTHKSFAHGSKPYNEKLAALGMQFLKYHTSVH 118 >gi|17510279|ref|NP_493554.1| hypothetical protein Y54E5A.6 [Caenorhabditis elegans] gi|3925277|emb|CAA21662.1| C. elegans protein Y54E5A.6, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 436 Score = 42.6 bits (98), Expect = 0.047, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 5/72 (6%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQ 213 K L ++ Y+V R D RF I G+ + R AEQ Sbjct: 358 PTPKMVLHDYCVETKIPKATYEVVKRD----DKRFVATACIGDKKYRSGIGQPNLRMAEQ 413 Query: 214 VAAAEVLKREGI 225 VAA L I Sbjct: 414 VAALAALHGMNI 425 >gi|328766179|gb|EGF76236.1| hypothetical protein BATDEDRAFT_28693 [Batrachochytrium dendrobatidis JAM81] Length = 334 Score = 42.2 bits (97), Expect = 0.047, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 45/148 (30%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S + ++RLEFLGD +L L+ L+ G LS LV + + V+ + Sbjct: 6 SGTGKLGSIFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 65 Query: 91 LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 + L +IR + + + + S + +W + Sbjct: 66 IGLVKYIRHTDMTMEAAIGRFAAWVQGYLASESSTSLPISTSATQIASARLFWNKGNTAP 125 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ L + Sbjct: 126 KTAGDVYESMLGAVFVDSQFDIHCVQSM 153 >gi|315046170|ref|XP_003172460.1| hypothetical protein MGYG_05052 [Arthroderma gypseum CBS 118893] gi|311342846|gb|EFR02049.1| hypothetical protein MGYG_05052 [Arthroderma gypseum CBS 118893] Length = 636 Score = 42.2 bits (97), Expect = 0.047, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Query: 1 MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 MS+ +E +GY F ++ LL KALT + + + RL LG ++ L+ + Sbjct: 1 MSSKTSIRPVEDIVGYTFKSKPLLLKALTAAGSELNDYDGNRRLAQLGTALVEFLLVYIG 60 Query: 60 FNHFDSAKE 68 + Sbjct: 61 YRQNVPRDH 69 >gi|317149047|ref|XP_001823093.2| RNAse III [Aspergillus oryzae RIB40] Length = 155 Score = 42.2 bits (97), Expect = 0.048, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 9/135 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKAL-THSSIS---HSYQESYERLEFLGDRILGLLISTLLF 60 R +E+ I Y F N + + +AL T S++ + ++ L LGD L L+++ + Sbjct: 11 RIQLIEQIINYTFTNPATIHEALRTPGSMAILTPHRLDGHKDLAQLGDAALRLVLAKDGY 70 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 G+++ + S ++ + L +I V+ + A VE Sbjct: 71 QAHA--TRGQINDTHSGKASNAFLARTGFQKGLDRYIYVNPS---QGGIVSDKVMATTVE 125 Query: 121 SLIAALYLDGGIEVA 135 +++ A+Y+D G ++ Sbjct: 126 AILGAVYIDSGEDIP 140 >gi|307206632|gb|EFN84611.1| Double-stranded RNA-specific editase Adar [Harpegnathos saltator] Length = 294 Score = 42.2 bits (97), Expect = 0.048, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 3/50 (6%) Query: 176 KVTFRSGPDH--DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + TF P H + + V E+ G G SK A Q AA LK Sbjct: 58 QFTFPETPGHVSNSLYLVHAELDGKTY-VGQGLSKPLARQAAAENALKAL 106 >gi|195471419|ref|XP_002088002.1| r2d2 [Drosophila yakuba] gi|82469854|gb|ABB77185.1| R2D2 [Drosophila yakuba] gi|82469858|gb|ABB77187.1| R2D2 [Drosophila yakuba] gi|82469862|gb|ABB77189.1| R2D2 [Drosophila yakuba] gi|82469864|gb|ABB77190.1| R2D2 [Drosophila yakuba] gi|82469868|gb|ABB77192.1| R2D2 [Drosophila yakuba] gi|194174103|gb|EDW87714.1| r2d2 [Drosophila yakuba] Length = 321 Score = 42.2 bits (97), Expect = 0.048, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211 RD EL+++ P ++ +SG + P F ++ + S K+ A Sbjct: 103 NRDMLRELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDA 159 Query: 212 EQVAAAEVL 220 Q AA E+L Sbjct: 160 RQRAAIEML 168 >gi|82469856|gb|ABB77186.1| R2D2 [Drosophila yakuba] gi|82469866|gb|ABB77191.1| R2D2 [Drosophila yakuba] Length = 321 Score = 42.2 bits (97), Expect = 0.048, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211 RD EL+++ P ++ +SG + P F ++ + S K+ A Sbjct: 103 NRDMLRELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDA 159 Query: 212 EQVAAAEVL 220 Q AA E+L Sbjct: 160 RQRAAIEML 168 >gi|82469860|gb|ABB77188.1| R2D2 [Drosophila yakuba] Length = 321 Score = 42.2 bits (97), Expect = 0.048, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211 RD EL+++ P ++ +SG + P F ++ + S K+ A Sbjct: 103 NRDMLRELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDA 159 Query: 212 EQVAAAEVL 220 Q AA E+L Sbjct: 160 RQRAAIEML 168 >gi|62088582|dbj|BAD92738.1| nuclear RNase III Drosha variant [Homo sapiens] Length = 432 Score = 42.2 bits (97), Expect = 0.048, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 330 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 360 >gi|46205475|ref|ZP_00209888.1| hypothetical protein Magn03001534 [Magnetospirillum magnetotacticum MS-1] Length = 52 Score = 42.2 bits (97), Expect = 0.049, Method: Composition-based stats. Identities = 14/26 (53%), Positives = 17/26 (65%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSS 31 LE RIG+ FA+ +LL ALTH S Sbjct: 24 LEVLEARIGHVFADPTLLPLALTHVS 49 >gi|82469816|gb|ABB77166.1| R2D2 [Drosophila santomea] Length = 309 Score = 42.2 bits (97), Expect = 0.050, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211 RD EL+++ P ++ +SG + P F ++ + S K+ A Sbjct: 91 NRDMLKELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDA 147 Query: 212 EQVAAAEVL 220 Q AA E+L Sbjct: 148 RQRAAIEML 156 Score = 38.0 bits (86), Expect = 0.94, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D + V++ + A G SKR A+ +AA +L++ Sbjct: 26 DGGYVCKVDLMEVE-AYGNGRSKRDAKHLAAVNILRKI 62 >gi|82469822|gb|ABB77169.1| R2D2 [Drosophila takahashii] Length = 304 Score = 42.2 bits (97), Expect = 0.050, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211 RD EL+++ P ++ +SG + P F ++ + S K+ A Sbjct: 86 NRDMLKELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDA 142 Query: 212 EQVAAAEVL 220 Q AA E+L Sbjct: 143 RQRAAIEML 151 Score = 40.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D + V + + A G SKR A+ +AAA +L++ Sbjct: 21 DGGYVCKVVLMEIE-AYGNGRSKRDAKHLAAANILRKI 57 >gi|82469810|gb|ABB77163.1| R2D2 [Drosophila paralutea] Length = 306 Score = 42.2 bits (97), Expect = 0.050, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211 RD EL+++ P ++ +SG + P F ++ + S K+ A Sbjct: 88 NRDMLKELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDA 144 Query: 212 EQVAAAEVL 220 Q AA E+L Sbjct: 145 RQRAAIEML 153 Score = 39.5 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D + V + + + G SKR A+ +AAA +L++ Sbjct: 23 DGGYVCKVVLMEIE-SYGNGRSKRDAKHLAAANILRKI 59 >gi|82469820|gb|ABB77168.1| R2D2 [Drosophila teissieri] Length = 321 Score = 42.2 bits (97), Expect = 0.050, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211 RD EL+++ P ++ +SG + P F ++ + S K+ A Sbjct: 103 NRDMLKELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDA 159 Query: 212 EQVAAAEVL 220 Q AA E+L Sbjct: 160 RQRAAIEML 168 Score = 38.0 bits (86), Expect = 0.94, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D + V++ + A G SKR A+ +AA +L++ Sbjct: 38 DGGYVCKVDLMEVE-AYGNGRSKRDAKHLAAVNILRKI 74 >gi|82469812|gb|ABB77164.1| R2D2 [Drosophila prostipennis] Length = 301 Score = 42.2 bits (97), Expect = 0.050, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211 RD EL+++ P ++ +SG + P F ++ + S K+ A Sbjct: 83 NRDMLKELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDA 139 Query: 212 EQVAAAEVL 220 Q AA E+L Sbjct: 140 RQRAAIEML 148 Score = 39.5 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D + V + + + G SKR A+ +AAA +L++ Sbjct: 18 DGGYVCKVVLMEIE-SYGNGRSKRDAKHLAAANILRKI 54 >gi|321463658|gb|EFX74672.1| hypothetical protein DAPPUDRAFT_324075 [Daphnia pulex] Length = 119 Score = 42.2 bits (97), Expect = 0.051, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRI 50 R LE+ + Y F +++LL +AL ++ +Y + GD Sbjct: 35 RLEKLEEILNYEFHSKNLLLEALI---LNEDKNSNYNKDTCQGDSW 77 >gi|238494382|ref|XP_002378427.1| RNAse III, putative [Aspergillus flavus NRRL3357] gi|220695077|gb|EED51420.1| RNAse III, putative [Aspergillus flavus NRRL3357] Length = 155 Score = 42.2 bits (97), Expect = 0.051, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 9/135 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKAL-THSSIS---HSYQESYERLEFLGDRILGLLISTLLF 60 R +E+ I Y F N + + +AL T S++ + ++ L LGD L L+++ + Sbjct: 11 RIQLIEQIINYTFTNPATIHEALRTPGSMAILTPHRLDGHKDLAQLGDAALRLVLAKDGY 70 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 G++ + S ++ + L +I V+ + A VE Sbjct: 71 QAHA--TRGQIDDTHSGKASNAFLARTGFQKGLDRYIYVNPS---QGGIVSDKVMATTVE 125 Query: 121 SLIAALYLDGGIEVA 135 +++ A+Y+D G ++ Sbjct: 126 AILGAVYIDSGEDIP 140 >gi|321463676|gb|EFX74690.1| hypothetical protein DAPPUDRAFT_251609 [Daphnia pulex] Length = 282 Score = 42.2 bits (97), Expect = 0.051, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 45/143 (31%), Gaps = 5/143 (3%) Query: 78 LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137 V + +Q L+ I SS+ + + AD E+LI AL D E Sbjct: 84 FVDHQNKNQHLFSLEKELVIISSSEGDRVFDIDYPKVYADAFETLIGALLRDCEREDKVI 143 Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197 + LQ + + + G F V++++ Sbjct: 144 RKVVLNLMGDVIVKFHNNIPVCPLQRVNQNRIKPEFKEEKNLPDG-----TFHVILKVKN 198 Query: 198 LAPAQGMDCSKRAAEQVAAAEVL 220 L G S ++A+ AA + Sbjct: 199 LQSFHGSGPSMKSAKTAAAKLAI 221 >gi|313226819|emb|CBY21964.1| unnamed protein product [Oikopleura dioica] Length = 816 Score = 42.2 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 3/66 (4%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRA 210 + K L W + T P F ++ G G SK+ Sbjct: 34 NTNMEPKAWLYAWLGFRHIRPTYSWQTMGERPS--QSFKCILSAEGFKEKGTGTAQSKKE 91 Query: 211 AEQVAA 216 A+ AA Sbjct: 92 AQSQAA 97 >gi|195448673|ref|XP_002071763.1| GK10156 [Drosophila willistoni] gi|194167848|gb|EDW82749.1| GK10156 [Drosophila willistoni] Length = 458 Score = 42.2 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 186 DPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 D F V G + + +K+ AEQ AA L G Sbjct: 404 DKLFRAVCLFDGQRFSSTFWEKNKKQAEQGAALVALLHMG 443 >gi|296231401|ref|XP_002761128.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 3 [Callithrix jacchus] Length = 458 Score = 42.2 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAE 212 + K L EW + P Y+ R D F+ +V ++ + D SK+ AE Sbjct: 332 QITPKMCLLEWCRREKLPQPMYETVQR---PIDRLFSSIVTVAEQKYQSTLWDKSKKLAE 388 Query: 213 QVAAAEVLKREGI 225 Q AA L+ +G+ Sbjct: 389 QAAAIVCLRSQGL 401 >gi|296231397|ref|XP_002761126.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 1 [Callithrix jacchus] gi|296231399|ref|XP_002761127.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 2 [Callithrix jacchus] Length = 493 Score = 42.2 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAE 212 + K L EW + P Y+ R D F+ +V ++ + D SK+ AE Sbjct: 367 QITPKMCLLEWCRREKLPQPMYETVQR---PIDRLFSSIVTVAEQKYQSTLWDKSKKLAE 423 Query: 213 QVAAAEVLKREGI 225 Q AA L+ +G+ Sbjct: 424 QAAAIVCLRSQGL 436 >gi|149711170|ref|XP_001495912.1| PREDICTED: similar to mitochondrial ribosomal protein L44 [Equus caballus] Length = 332 Score = 42.2 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 67/236 (28%), Gaps = 21/236 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48 R+ F+ LL+ A +S S E L G Sbjct: 72 IQAFGHRLQETFS-LDLLKTAFVNSCYIKSEEAKREKLGIEKEAVLLNLEDNRELSEQGS 130 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ L F L L E VAR L + + Sbjct: 131 SFSQTCLTQFLEEAFPDLPTEGLQSLVGFLTGEEVVCHVARNLAVEQLTLSAEFPVPP-- 188 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + + VV +L+ + F+ + L + L E + Sbjct: 189 TVLQRTFFAVVGALLQSSGAGRAALFIRDFLITQMTGKELFEIWKIINPMGLLVEELKKR 248 Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 249 NIPAPESRLTRQSGSTTALPLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304 >gi|2961456|gb|AAC05725.1| RNA helicase A [Mus musculus] Length = 1380 Score = 42.2 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 G + +F V + G G +K+ A+ AA + Sbjct: 12 CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYRGMGNSTNKKDAQSNAARD 64 >gi|291001343|ref|XP_002683238.1| predicted protein [Naegleria gruberi] gi|284096867|gb|EFC50494.1| predicted protein [Naegleria gruberi] Length = 393 Score = 42.2 bits (97), Expect = 0.054, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 45/139 (32%), Gaps = 6/139 (4%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS------TLLFNHFDSAKEGELSV 73 ++LL +++TH+S S ERL F+G +L ++++ ++ + + Sbjct: 133 QTLLLRSVTHASYGTGKVRSQERLSFIGSFVLNMVLTEIISQKYMVNQNNCGRENFNTVN 192 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 S+ + + + ++ + + + + D IE Sbjct: 193 LIKSIYNNRSFLAFIVANQYWNLSNQYNNKTVENDTKLNKSLNQICTKYNITDLNDNIIE 252 Query: 134 VAGTFVDKYWKQRALKSGK 152 V S K Sbjct: 253 VDNEHYTLRVVGWNEMSFK 271 >gi|256080282|ref|XP_002576411.1| tRNA-dihydrouridine synthase [Schistosoma mansoni] gi|238661678|emb|CAZ32648.1| tRNA-dihydrouridine synthase, putative [Schistosoma mansoni] Length = 492 Score = 42.2 bits (97), Expect = 0.054, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 45/179 (25%), Gaps = 4/179 (2%) Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 I +L + ++ T + + S S + Sbjct: 298 AIWNMLDVYDHEMSKRLERLKNHHHHHQFTLNNSTINCNQEIISSPSISISSDTILIPEK 357 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + + I + D I + +F D T ++ Sbjct: 358 RSRV--EELSSNTTIVLVNNDNDITGVKINNLEEIVLSIPYERRFWPDHGTSPKQILREH 415 Query: 169 FGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225 + + + D D R F V + G SK+ AEQ A L GI Sbjct: 416 CKLLKWDSPKYETIEDRDKRSFFSTVLVDGRRYRNTSACKSKKYAEQAAVLVCLHVLGI 474 >gi|169605473|ref|XP_001796157.1| hypothetical protein SNOG_05760 [Phaeosphaeria nodorum SN15] gi|111065704|gb|EAT86824.1| hypothetical protein SNOG_05760 [Phaeosphaeria nodorum SN15] Length = 159 Score = 42.2 bits (97), Expect = 0.054, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 15/149 (10%) Query: 3 ALRYSTL-----EKRIGYAFANRSLLEKALTHS------SISHSYQESYERLEFLGDRIL 51 ++R S L E + + F NR LL +AL ++ + + + L LGD + Sbjct: 5 SIRISALILSACEALLSHTFTNRLLLLEALNNTGLPLVYNAKSHVLQRNDALAVLGDARM 64 Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 ++ ++ +G+ S T +Q+ R L + +++ + Sbjct: 65 DAILCRWWWDAGFQRVKGQWSQARLDKCGNVTLAQLGRRLGVDTYVIKNPGTVVVS---- 120 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVD 140 + A VE+L+ A+YLDGG E + Sbjct: 121 DKMVAMAVEALMGAVYLDGGEEALEGVMM 149 >gi|82469824|gb|ABB77170.1| R2D2 [Drosophila melanogaster] Length = 311 Score = 42.2 bits (97), Expect = 0.054, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T T+ P D + VE+ + A G SKR A+ +AA+ +L++ Sbjct: 11 QEFCARTQINIPTYSFIPGEDGGYVCKVELLEIE-ALGNGRSKRDAKHLAASNILRKI 67 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211 RD EL+++ + P ++ +SG P F ++ + S K+ A Sbjct: 93 NRDMVKELRDYCVRREMPLPCIEIVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDA 149 Query: 212 EQVAAAEVL 220 Q AA E+L Sbjct: 150 RQRAAIEML 158 >gi|194770353|ref|XP_001967258.1| GF15959 [Drosophila ananassae] gi|190614534|gb|EDV30058.1| GF15959 [Drosophila ananassae] Length = 460 Score = 42.2 bits (97), Expect = 0.055, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 39/156 (25%), Gaps = 6/156 (3%) Query: 70 ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129 RF + + ++ D + + + L + Sbjct: 295 PRGKRFLQCQTLQQICEIWHLGDYCRRKQKELQTLGNSGRADVEPPEAQAKRLKLEEAAN 354 Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 + + + KT+L A P Y+ D F Sbjct: 355 AIEDEYAGVICRNMPFLRSTYPSDNHLPKTQLYVHAGKAGKNPPGYETQQC-----DKLF 409 Query: 190 TVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224 + G + + +K+ AEQ AA L G Sbjct: 410 RAICSYDGQRFSSTFWEKNKKQAEQGAALVALLHLG 445 >gi|118783761|ref|XP_001230901.1| AGAP004281-PA [Anopheles gambiae str. PEST] gi|116129024|gb|EAU76990.1| AGAP004281-PA [Anopheles gambiae str. PEST] Length = 344 Score = 42.2 bits (97), Expect = 0.056, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + G G SK+ A ++AA+E K Sbjct: 301 FVARVTV-GEQSFTGTGQSKKVARKMAASEACKAL 334 >gi|311264943|ref|XP_003130412.1| PREDICTED: ATP-dependent RNA helicase A-like [Sus scrofa] Length = 160 Score = 42.2 bits (97), Expect = 0.057, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V + G GM S K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNY-TGMGNSTNKKDAQSNAARD 64 >gi|296478925|gb|DAA21040.1| ATP-dependent RNA helicase A [Bos taurus] Length = 1287 Score = 42.2 bits (97), Expect = 0.057, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V + G GM S K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNY-TGMGNSTNKKDAQSNAARD 64 >gi|291415218|ref|XP_002723851.1| PREDICTED: ATP-dependent RNA helicase A [Oryctolagus cuniculus] Length = 1260 Score = 42.2 bits (97), Expect = 0.057, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V + G GM S K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNY-TGMGNSTNKKDAQSNAARD 64 >gi|27806665|ref|NP_776461.1| ATP-dependent RNA helicase A [Bos taurus] gi|2500541|sp|Q28141|DHX9_BOVIN RecName: Full=ATP-dependent RNA helicase A; AltName: Full=DEAH box protein 9; AltName: Full=Nuclear DNA helicase II; Short=NDH II gi|577739|emb|CAA58036.1| nuclear DNA helicase II [Bos taurus] Length = 1287 Score = 42.2 bits (97), Expect = 0.057, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V + G GM S K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNY-TGMGNSTNKKDAQSNAARD 64 >gi|328865213|gb|EGG13599.1| putative RNA helicase [Dictyostelium fasciculatum] Length = 760 Score = 42.2 bits (97), Expect = 0.057, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 19/52 (36%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T + DH +F V++ G +K+ AE+ AA L Sbjct: 21 TLPTYDVTTTCQDHAKKFMCKVKVQGHQYNSLWMDNKKDAEKHAATVALVEL 72 >gi|190339936|gb|AAI63533.1| Similar to NF-kappa-B-repressing factor (NFkB-repressing factor) (Transcription factor NRF) (ITBA4 protein) [Danio rerio] Length = 861 Score = 42.2 bits (97), Expect = 0.057, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 2/85 (2%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + + +A + ++ + TF P+ + + V + G Sbjct: 478 QYVPDRSKHWTEFVIMENAHDAICILNNSAAFNRMKVDYTFDPVPNSN-LWLCNVYLQGE 536 Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223 AQ +K++A+ AA E +K+ Sbjct: 537 LVAQARG-TKKSAKHSAAEEAVKKL 560 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D + V + G A G+ K+ + +AA E L Sbjct: 645 DHSWRCEVYLDGQYVATGLGP-KKTVKHIAAEEALATL 681 >gi|319738667|ref|NP_001004499.2| NF-kappa B repressing factor [Danio rerio] Length = 858 Score = 42.2 bits (97), Expect = 0.057, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 2/85 (2%) Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 + + +A + ++ + TF P+ + + V + G Sbjct: 478 QYVPDRSKHWTEFVIMENAHDAICILNNSAAFNRMKVDYTFDPVPNSN-LWLCNVYLQGE 536 Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223 AQ +K++A+ AA E +K+ Sbjct: 537 LVAQARG-TKKSAKHSAAEEAVKKL 560 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D + V + G A G+ K+ + +AA E L Sbjct: 642 DHSWRCEVYLDGQYVATGLGP-KKTVKHIAAEEALAML 678 >gi|312375539|gb|EFR22895.1| hypothetical protein AND_14041 [Anopheles darlingi] Length = 512 Score = 42.2 bits (97), Expect = 0.058, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 7/151 (4%) Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL------YLDGGIEVA 135 +T Q+ +L + R + + + SL ++ E Sbjct: 306 QTMQQICDIWELGDYCRETQLVYHQAGNQGRRACRPRTLSLDQSVDGSFGGGKRQCFEGQ 365 Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + ++ + + + EL + + ++ D F ++E Sbjct: 366 TSNQEQSVIEENICFIRANFPQDNELPKTKLFLYARRNNLELAQYEVQQKDKLFKGIIEF 425 Query: 196 SGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225 G + + SKR AEQ AA L + G+ Sbjct: 426 DGKRYSSTFWEKSKRFAEQAAALVCLVQLGV 456 >gi|158339747|ref|YP_001520754.1| exoribonuclease II, putative [Acaryochloris marina MBIC11017] gi|158309988|gb|ABW31604.1| exoribonuclease II, putative [Acaryochloris marina MBIC11017] Length = 767 Score = 42.2 bits (97), Expect = 0.059, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 3/57 (5%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T ++ + D F E+ G+ K+ A+ +AA E+L++ Sbjct: 695 CQTLRWETPVYTMDSSDEWFICECELSVLGQQLEGSGVAKKKKLAKSIAAREILEQL 751 >gi|301776997|ref|XP_002923919.1| PREDICTED: ATP-dependent RNA helicase A-like [Ailuropoda melanoleuca] Length = 1276 Score = 42.2 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 G + +F V + G G +K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSNAARD 64 >gi|281337823|gb|EFB13407.1| hypothetical protein PANDA_013142 [Ailuropoda melanoleuca] Length = 1155 Score = 42.2 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 G + +F V + G G +K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSNAARD 64 >gi|145492648|ref|XP_001432321.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124399432|emb|CAK64924.1| unnamed protein product [Paramecium tetraurelia] Length = 467 Score = 42.2 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 16/31 (51%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219 F I+ L A+G SK+ A+ AA++ Sbjct: 30 FRCEFYINCLKIAEGQGVSKKYAKNDAASKA 60 >gi|73960433|ref|XP_859097.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA helicase II) (NDH II) (DEAH-box protein 9) isoform 3 [Canis familiaris] Length = 862 Score = 42.2 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 G + +F V + G G +K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSNAARD 64 >gi|73960441|ref|XP_859257.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA helicase II) (NDH II) (DEAH-box protein 9) isoform 6 [Canis familiaris] Length = 1284 Score = 42.2 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 G + +F V + G G +K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSNAARD 64 >gi|73960443|ref|XP_859296.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA helicase II) (NDH II) (DEAH-box protein 9) isoform 7 [Canis familiaris] Length = 1284 Score = 42.2 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 G + +F V + G G +K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSNAARD 64 >gi|73960435|ref|XP_849581.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA helicase II) (NDH II) (DEAH-box protein 9) isoform 2 [Canis familiaris] gi|73960445|ref|XP_537154.2| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA helicase II) (NDH II) (DEAH-box protein 9) isoform 1 [Canis familiaris] Length = 1276 Score = 42.2 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 G + +F V + G G +K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSNAARD 64 >gi|324518074|gb|ADY46997.1| Protein SON [Ascaris suum] gi|324540941|gb|ADY49607.1| Protein SON [Ascaris suum] Length = 140 Score = 42.2 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQ 213 + + L E K P++ SGP ++ RFT ++G+ SK+ + Sbjct: 62 KHPVSMLMELCSKKHWPPPQFTCIE-SGPSNNRRFTWKAVVNGVEYEPIASSASKKTGKA 120 Query: 214 VAAAEVLKREGI 225 A VL+ G+ Sbjct: 121 QVCAVVLQSLGL 132 >gi|149247014|ref|XP_001527932.1| hypothetical protein LELG_00452 [Lodderomyces elongisporus NRRL YB-4239] gi|146447886|gb|EDK42274.1| hypothetical protein LELG_00452 [Lodderomyces elongisporus NRRL YB-4239] Length = 640 Score = 42.2 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 6/44 (13%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV------LKREGI 225 F V ++G+ G+D SK+ + Q AA L + G+ Sbjct: 594 EFHSVCLLNGVKLGYGIDRSKQRSSQKAAMAAMSNRNELAKLGV 637 >gi|242766587|ref|XP_002341200.1| RNAse III, putative [Talaromyces stipitatus ATCC 10500] gi|218724396|gb|EED23813.1| RNAse III, putative [Talaromyces stipitatus ATCC 10500] Length = 142 Score = 42.2 bits (97), Expect = 0.061, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +++ GY F ++SLL +A+ + ++ + L G IL + I + Sbjct: 12 VQAIQEITGYTFNDQSLLSEAV--EAADFRNKDGNKDLALPGGAILKVFIIMEGRQRHQN 69 Query: 66 AKE 68 K Sbjct: 70 RKT 72 >gi|218461557|ref|ZP_03501648.1| ribonuclease III [Rhizobium etli Kim 5] Length = 45 Score = 42.2 bits (97), Expect = 0.061, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 19/35 (54%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39 + LE IGY F ++ L++ALTH+S + Sbjct: 11 DRAKLESLIGYDFVEKARLDRALTHASARTEKGGN 45 >gi|149636339|ref|XP_001515991.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Ornithorhynchus anatinus] Length = 1325 Score = 42.2 bits (97), Expect = 0.061, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V + G GM S K+ A+ AA + Sbjct: 12 CGKRKVTPTYEIRAVGNKNRQKFMCEVRVEGFNY-TGMGNSTNKKDAQSNAARD 64 >gi|115534938|ref|NP_508195.2| hypothetical protein F55A4.4 [Caenorhabditis elegans] gi|90568094|gb|AAB07562.2| Hypothetical protein F55A4.4 [Caenorhabditis elegans] Length = 284 Score = 42.2 bits (97), Expect = 0.061, Method: Composition-based stats. Identities = 14/121 (11%), Positives = 32/121 (26%), Gaps = 1/121 (0%) Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 + + + A + +K + +L E Sbjct: 91 KAMGKGKNKKSAQQEACTQLLATVEHLTLAANVRKTEKNQATMKKDEEIDVLNPVAQLNE 150 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +A + P ++ F + +G SK +++ AA +L+ Sbjct: 151 YAQKFYKKYPTFEFVKEQAVGKHREFVIQATFENKTL-EGRGPSKIISKRAAAEAILESI 209 Query: 224 G 224 G Sbjct: 210 G 210 Score = 37.6 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 5/44 (11%) Query: 182 GPDHDPRFTVV---VEISGLAPAQ--GMDCSKRAAEQVAAAEVL 220 G H+ ++ V V + A+ G +K++A+Q A ++L Sbjct: 68 GDQHNRQYAVRYTLVADDNVVKAKAMGKGKNKKSAQQEACTQLL 111 >gi|268570080|ref|XP_002640687.1| Hypothetical protein CBG19749 [Caenorhabditis briggsae] gi|187023917|emb|CAP36964.1| hypothetical protein CBG_19749 [Caenorhabditis briggsae AF16] Length = 436 Score = 42.2 bits (97), Expect = 0.061, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 23/72 (31%), Gaps = 5/72 (6%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQ 213 K L ++ Y+ R D RF I G+ + R AEQ Sbjct: 358 PTPKMVLHDYLVETKTPKATYETVKRE----DKRFVSTAIIGDKKFRSGIGQPNLRMAEQ 413 Query: 214 VAAAEVLKREGI 225 VAA L I Sbjct: 414 VAALAALHGMNI 425 >gi|302794035|ref|XP_002978782.1| hypothetical protein SELMODRAFT_418472 [Selaginella moellendorffii] gi|300153591|gb|EFJ20229.1| hypothetical protein SELMODRAFT_418472 [Selaginella moellendorffii] Length = 798 Score = 41.8 bits (96), Expect = 0.062, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 188 RFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F VE+ +G K+ AEQ AA + L G Sbjct: 41 TFYCKVELPNGTVVVSEPCRRKKDAEQDAARKALHEIG 78 >gi|37231562|gb|AAH58431.1| Dus2l protein [Mus musculus] Length = 289 Score = 41.8 bits (96), Expect = 0.062, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 4/76 (5%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKR 209 + K L EW + P Y+ R+ D F VV ++ + D SK+ Sbjct: 160 YPPQITPKMCLLEWCRREKLPQPVYETVQRTI---DRMFCSVVTVAEQKYQSTLWDKSKK 216 Query: 210 AAEQVAAAEVLKREGI 225 AEQ AA L+ +G+ Sbjct: 217 LAEQTAAIVCLRSQGL 232 >gi|159163360|pdb|1WHN|A Chain A, Solution Structure Of The Dsrbd From Hypothetical Protein Bab26260 Length = 128 Score = 41.8 bits (96), Expect = 0.062, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 4/76 (5%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKR 209 + K L EW + P Y+ R+ D F VV ++ + D SK+ Sbjct: 22 YPPQITPKMCLLEWCRREKLPQPVYETVQRTI---DRMFCSVVTVAEQKYQSTLWDKSKK 78 Query: 210 AAEQVAAAEVLKREGI 225 AEQ AA L+ +G+ Sbjct: 79 LAEQTAAIVCLRSQGL 94 >gi|148679393|gb|EDL11340.1| mCG20459, isoform CRA_a [Mus musculus] Length = 380 Score = 41.8 bits (96), Expect = 0.062, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 4/76 (5%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKR 209 + K L EW + P Y+ R+ D F VV ++ + D SK+ Sbjct: 251 YPPQITPKMCLLEWCRREKLPQPVYETVQRTI---DRMFCSVVTVAEQKYQSTLWDKSKK 307 Query: 210 AAEQVAAAEVLKREGI 225 AEQ AA L+ +G+ Sbjct: 308 LAEQTAAIVCLRSQGL 323 >gi|82469814|gb|ABB77165.1| R2D2 [Drosophila rufa] Length = 305 Score = 41.8 bits (96), Expect = 0.062, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 5/73 (6%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-- 207 RD EL+++ P ++ +SG + P F ++ + S Sbjct: 82 MTNLNRDMLKELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDK 138 Query: 208 KRAAEQVAAAEVL 220 K+ A Q AA +L Sbjct: 139 KKDARQRAAIAML 151 Score = 37.2 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D + V + + A G SKR A+ +AA +L++ Sbjct: 18 DGGYVCKVTMLEIE-AYGNGRSKRDAKHLAAGNILRKI 54 >gi|110625595|ref|NP_079794.1| tRNA-dihydrouridine synthase 2-like [Mus musculus] gi|73620836|sp|Q9D7B1|DUS2L_MOUSE RecName: Full=tRNA-dihydrouridine synthase 2-like gi|12844161|dbj|BAB26260.1| unnamed protein product [Mus musculus] gi|109733553|gb|AAI16937.1| Dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Mus musculus] gi|109733887|gb|AAI16935.1| Dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Mus musculus] gi|148679394|gb|EDL11341.1| mCG20459, isoform CRA_b [Mus musculus] Length = 493 Score = 41.8 bits (96), Expect = 0.062, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 4/76 (5%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKR 209 + K L EW + P Y+ R+ D F VV ++ + D SK+ Sbjct: 364 YPPQITPKMCLLEWCRREKLPQPVYETVQRTI---DRMFCSVVTVAEQKYQSTLWDKSKK 420 Query: 210 AAEQVAAAEVLKREGI 225 AEQ AA L+ +G+ Sbjct: 421 LAEQTAAIVCLRSQGL 436 >gi|195478541|ref|XP_002100554.1| GE17129 [Drosophila yakuba] gi|194188078|gb|EDX01662.1| GE17129 [Drosophila yakuba] Length = 473 Score = 41.8 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 186 DPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224 D F + G + + +K+ AEQ AA L G Sbjct: 419 DKLFRSICSYDGQRFSSSFWEKNKKQAEQGAALVALLHLG 458 >gi|330930999|ref|XP_003303230.1| hypothetical protein PTT_15361 [Pyrenophora teres f. teres 0-1] gi|311320897|gb|EFQ88677.1| hypothetical protein PTT_15361 [Pyrenophora teres f. teres 0-1] Length = 914 Score = 41.8 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 8/62 (12%) Query: 8 TLEKRIGYAFANRSLLEKAL-----THSSISHS---YQESYERLEFLGDRILGLLISTLL 59 +E+ IGY F ++ +AL T ++ RL LGDR L L +S + Sbjct: 90 RVEESIGYTFKHKLYCIEALKQTNSTTPLYFQGVAINTDNNRRLALLGDRALDLALSEIW 149 Query: 60 FN 61 F Sbjct: 150 FY 151 >gi|308812800|ref|XP_003083707.1| unnamed protein product [Ostreococcus tauri] gi|116055588|emb|CAL58256.1| unnamed protein product [Ostreococcus tauri] Length = 164 Score = 41.8 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 15/47 (31%) Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + F+V +E+ G S + A++ AA Sbjct: 89 WVIQEQDPAKQTFSVRLELGSTTKGSGEAKSIKVAKRQAAKSAFDEL 135 >gi|294657725|ref|XP_460024.2| DEHA2E16610p [Debaryomyces hansenii CBS767] gi|199432903|emb|CAG88280.2| DEHA2E16610p [Debaryomyces hansenii] Length = 216 Score = 41.8 bits (96), Expect = 0.064, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 47/130 (36%), Gaps = 11/130 (8%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 Y+ ++ L + LTH S + + E+L +G +IL L + L+ + + + Sbjct: 57 KYSISD-DLALQVLTHKSFGNGIKPYNEKLSAMGAKILNLFCAKLVTDKPTTNENAIDGK 115 Query: 74 ----------RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 + + + L+ F + + S + A ++ +L+ Sbjct: 116 NLDSLGSPIAKELAGRMSLGLFAKTTNLNSIMFWKSYNHDLSFESSGEMKVSAQMMYALV 175 Query: 124 AALYLDGGIE 133 A+ G E Sbjct: 176 GAITFTHGKE 185 >gi|328766772|gb|EGF76825.1| hypothetical protein BATDEDRAFT_28342 [Batrachochytrium dendrobatidis JAM81] Length = 460 Score = 41.8 bits (96), Expect = 0.065, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 45/148 (30%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90 S + ++RLEFLGD +L L L+ G LS LV + + V+ + Sbjct: 132 SGTGKLGSIFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 191 Query: 91 LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 + L +IR + + T+ + S + +W + Sbjct: 192 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTSLPISTSATQIASARLFWNKGNTAP 251 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVT 178 ++ L + Sbjct: 252 KTAGDVYESMLGAVFVDSQFDIHCVQSM 279 >gi|126336839|ref|XP_001376587.1| PREDICTED: similar to NF-kappaB repressing factor, [Monodelphis domestica] Length = 799 Score = 41.8 bits (96), Expect = 0.066, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + V + G A+G SK+ ++ AA E L Sbjct: 484 NRLWRCQVFLEGQCLAEGYG-SKKTSKHAAADEAL 517 >gi|330933507|ref|XP_003304192.1| hypothetical protein PTT_16685 [Pyrenophora teres f. teres 0-1] gi|311319337|gb|EFQ87704.1| hypothetical protein PTT_16685 [Pyrenophora teres f. teres 0-1] Length = 591 Score = 41.8 bits (96), Expect = 0.067, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 8/62 (12%) Query: 8 TLEKRIGYAFANRSLLEKAL-----THSSISHS---YQESYERLEFLGDRILGLLISTLL 59 +E+ IGY F ++ +AL T ++ RL LGDR L L +S + Sbjct: 90 RVEESIGYTFKHKLYCIEALKQTNSTTPLYFQGVAINTDNNRRLALLGDRALDLALSEIW 149 Query: 60 FN 61 F Sbjct: 150 FY 151 >gi|238878349|gb|EEQ41987.1| hypothetical protein CAWG_00181 [Candida albicans WO-1] Length = 220 Score = 41.8 bits (96), Expect = 0.068, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 3/69 (4%) Query: 2 SALRYSTLEKRIG--YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + S ++ +G Y + + + +TH S + + E+L +G ++L L + + Sbjct: 54 NETNISHIKSFLGDKYNIPD-EIALQVITHKSFGNGIKPYNEKLAAMGSKLLSLYFAKYV 112 Query: 60 FNHFDSAKE 68 N Sbjct: 113 TNQPCKHDN 121 >gi|82469800|gb|ABB77158.1| R2D2 [Drosophila biarmipes] Length = 302 Score = 41.8 bits (96), Expect = 0.068, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211 RD EL+++ P ++ + G + P F ++ + S K+ A Sbjct: 84 NRDMLKELRDYCVRHEMPLPTIEIVQQCGTPNAPEFVACCSVASIVR---YGKSDKKKDA 140 Query: 212 EQVAAAEVL 220 Q AA E+L Sbjct: 141 RQRAAIEML 149 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D + VE+ + A G SKR A+ +AAA +L++ Sbjct: 19 DGGYVCKVELMEIE-AYGNGRSKRDAKHLAAANILRKI 55 >gi|332022994|gb|EGI63259.1| tRNA-dihydrouridine synthase 2-like protein [Acromyrmex echinatior] Length = 461 Score = 41.8 bits (96), Expect = 0.069, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 45/149 (30%), Gaps = 7/149 (4%) Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVESLIAALYLDGGIEVAGTF 138 +A+T Q+ + L + R S+ + + +++ ++ I Sbjct: 306 NAQTLEQICQVWRLDDYCRSKSEEFQAKGLLGRFQVMPGILDKDNNSISHKRKIHEEEDV 365 Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198 KT L +W P Y S F VV + G Sbjct: 366 SLMRCAFLRNSYITDSELPKTRLLKWTKENRKKMPVYNTRQES-----KLFCSVVTVDGR 420 Query: 199 APAQG-MDCSKRAAEQVAAAEVLKREGIW 226 + +K+ AEQ AA L GI Sbjct: 421 KYGSSFWEKNKKWAEQGAALVCLYFLGII 449 >gi|241949343|ref|XP_002417394.1| 60S ribosomal protein L3, mitochondrial precursor, putative [Candida dubliniensis CD36] gi|223640732|emb|CAX45045.1| 60S ribosomal protein L3, mitochondrial precursor, putative [Candida dubliniensis CD36] Length = 407 Score = 41.8 bits (96), Expect = 0.070, Method: Composition-based stats. Identities = 7/30 (23%), Positives = 14/30 (46%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216 P+F V + +G+ S + A+ A+ Sbjct: 336 PQFLAGVFVGNDKIGEGIGSSLKEAQIRAS 365 >gi|301615908|ref|XP_002937403.1| PREDICTED: ATP-dependent RNA helicase A-like protein [Xenopus (Silurana) tropicalis] Length = 1257 Score = 41.8 bits (96), Expect = 0.070, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 +G +F V + G GM S K+ A+ AA + Sbjct: 12 CGKKKLTPNYEIRAAGNKMRQKFMCEVRVDGFNY-TGMGNSTNKKDAQTNAARD 64 >gi|307383|gb|AAB48855.1| RNA helicase A [Homo sapiens] Length = 1279 Score = 41.8 bits (96), Expect = 0.070, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V++ G GM S K+ A+ AA + Sbjct: 12 CGKRKMTPTYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64 >gi|82469826|gb|ABB77171.1| R2D2 [Drosophila melanogaster] Length = 311 Score = 41.8 bits (96), Expect = 0.072, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T T+ P D + VE+ + A G SKR A+ +AA+ +L++ Sbjct: 11 QEFCARTQINLPTYSFIPGEDGGYVCKVELLEIE-ALGNGRSKRDAKHLAASNILRKI 67 Score = 39.9 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211 RD EL+++ + P ++ +SG P F ++ + S K+ A Sbjct: 93 NRDMVKELRDYCVRREMPLPSIEIVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDA 149 Query: 212 EQVAAAEVL 220 Q AA E+L Sbjct: 150 RQRAAIEML 158 >gi|82469828|gb|ABB77172.1| R2D2 [Drosophila melanogaster] gi|82469832|gb|ABB77174.1| R2D2 [Drosophila melanogaster] Length = 311 Score = 41.8 bits (96), Expect = 0.072, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T T+ P D + VE+ + A G SKR A+ +AA+ +L++ Sbjct: 11 QEFCARTQINLPTYSFIPGEDGGYVCKVELLEIE-ALGNGRSKRDAKHLAASNILRKI 67 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211 RD EL+++ + P +V +SG P F ++ + S K+ A Sbjct: 93 NRDMVKELRDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDA 149 Query: 212 EQVAAAEVL 220 Q AA E+L Sbjct: 150 RQRAAIEML 158 >gi|82469838|gb|ABB77177.1| R2D2 [Drosophila melanogaster] Length = 311 Score = 41.8 bits (96), Expect = 0.072, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T T+ P D + VE+ + A G SKR A+ +AA+ +L++ Sbjct: 11 QEFCARTQINLPTYSFIPGEDGGYVCKVELLEIE-ALGNGRSKRDAKHLAASNILRKI 67 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211 RD EL+++ + P +V +SG P F ++ + S K+ A Sbjct: 93 NRDMVKELRDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDA 149 Query: 212 EQVAAAEVL 220 Q AA E+L Sbjct: 150 RQRAAIEML 158 >gi|24582609|ref|NP_609152.1| r2d2, isoform A [Drosophila melanogaster] gi|281364575|ref|NP_001162903.1| r2d2, isoform B [Drosophila melanogaster] gi|7297298|gb|AAF52561.1| r2d2, isoform A [Drosophila melanogaster] gi|48958433|gb|AAT47770.1| LD06392p [Drosophila melanogaster] gi|82469830|gb|ABB77173.1| R2D2 [Drosophila melanogaster] gi|272406933|gb|ACZ94194.1| r2d2, isoform B [Drosophila melanogaster] Length = 311 Score = 41.8 bits (96), Expect = 0.072, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T T+ P D + VE+ + A G SKR A+ +AA+ +L++ Sbjct: 11 QEFCARTQINLPTYSFIPGEDGGYVCKVELLEIE-ALGNGRSKRDAKHLAASNILRKI 67 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211 RD EL+++ + P +V +SG P F ++ + S K+ A Sbjct: 93 NRDMVKELRDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDA 149 Query: 212 EQVAAAEVL 220 Q AA E+L Sbjct: 150 RQRAAIEML 158 >gi|224005857|ref|XP_002291889.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220972408|gb|EED90740.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 1310 Score = 41.8 bits (96), Expect = 0.072, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 2/77 (2%) Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG--PDHDPRFTVVVEISGLAPAQGMDC 206 S + +L E + + V S F + V ++ + +G Sbjct: 527 CSKYRWEMPRYDLIEPPSLPPSKSNDNNVGEGSNVSRHSARDFVLSVHVNEVELGRGRGG 586 Query: 207 SKRAAEQVAAAEVLKRE 223 +K +A+Q A+ + L Sbjct: 587 TKASAKQDASRKALAAL 603 >gi|332230603|ref|XP_003264483.1| PREDICTED: ATP-dependent RNA helicase A isoform 1 [Nomascus leucogenys] Length = 1270 Score = 41.8 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V++ G GM S K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64 >gi|296229581|ref|XP_002760333.1| PREDICTED: ATP-dependent RNA helicase A isoform 1 [Callithrix jacchus] gi|296229583|ref|XP_002760334.1| PREDICTED: ATP-dependent RNA helicase A isoform 2 [Callithrix jacchus] Length = 1270 Score = 41.8 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V++ G GM S K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64 >gi|194765667|ref|XP_001964948.1| GF21798 [Drosophila ananassae] gi|190617558|gb|EDV33082.1| GF21798 [Drosophila ananassae] Length = 316 Score = 41.8 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KR 209 RD EL+++ P ++ + G + P F +++ L S K+ Sbjct: 97 NTNRDMLKELRDFCVRHEMPLPTIEIVQQCGTPNAPEFVACCKVASLTR---YGKSDKKK 153 Query: 210 AAEQVAAAEVL 220 A Q AA E+L Sbjct: 154 DARQRAAIEML 164 >gi|119611543|gb|EAW91137.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_a [Homo sapiens] Length = 1014 Score = 41.8 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V++ G GM S K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64 >gi|116283708|gb|AAH25245.1| DHX9 protein [Homo sapiens] Length = 593 Score = 41.8 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V++ G GM S K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64 >gi|109019118|ref|XP_001114405.1| PREDICTED: ATP-dependent RNA helicase A isoform 2 [Macaca mulatta] gi|297281300|ref|XP_002802074.1| PREDICTED: ATP-dependent RNA helicase A [Macaca mulatta] Length = 1275 Score = 41.8 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V++ G GM S K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64 >gi|33878473|gb|AAH14246.1| DHX9 protein [Homo sapiens] Length = 599 Score = 41.8 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V++ G GM S K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64 >gi|62020087|gb|AAH08773.1| DHX9 protein [Homo sapiens] Length = 596 Score = 41.8 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V++ G GM S K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64 >gi|82469808|gb|ABB77162.1| R2D2 [Drosophila pallidosa] Length = 293 Score = 41.8 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KR 209 RD EL+++ P ++ + G + P F +++ L S K+ Sbjct: 74 NTNRDMLKELRDFCVRHEMPLPTIEIVQQCGTPNAPEFVACCKVASLTR---YGKSDKKK 130 Query: 210 AAEQVAAAEVL 220 A Q AA E+L Sbjct: 131 DARQRAAIEML 141 >gi|297662534|ref|XP_002809755.1| PREDICTED: ATP-dependent RNA helicase A-like [Pongo abelii] gi|71153339|sp|Q5R874|DHX9_PONAB RecName: Full=ATP-dependent RNA helicase A; AltName: Full=DEAH box protein 9; AltName: Full=Nuclear DNA helicase II; Short=NDH II gi|55730630|emb|CAH92036.1| hypothetical protein [Pongo abelii] Length = 1269 Score = 41.8 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V++ G GM S K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64 >gi|100913206|ref|NP_001348.2| ATP-dependent RNA helicase A [Homo sapiens] gi|332811349|ref|XP_003308679.1| PREDICTED: ATP-dependent RNA helicase A isoform 1 [Pan troglodytes] gi|116241330|sp|Q08211|DHX9_HUMAN RecName: Full=ATP-dependent RNA helicase A; AltName: Full=DEAH box protein 9; AltName: Full=Nuclear DNA helicase II; Short=NDH II gi|55662450|emb|CAH71701.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapiens] gi|56206329|emb|CAI19277.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapiens] gi|119611544|gb|EAW91138.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_b [Homo sapiens] gi|187952519|gb|AAI37137.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapiens] gi|255652739|dbj|BAH90798.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [synthetic construct] Length = 1270 Score = 41.8 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V++ G GM S K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64 >gi|1082769|pir||A47363 RNA helicase A - human Length = 1279 Score = 41.8 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V++ G GM S K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64 >gi|1806048|emb|CAA71668.1| nuclear DNA helicase II [Homo sapiens] Length = 1270 Score = 41.8 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218 G + +F V++ G GM S K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64 >gi|189198173|ref|XP_001935424.1| 60S ribosomal protein L3 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187981372|gb|EDU47998.1| 60S ribosomal protein L3 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 444 Score = 41.8 bits (96), Expect = 0.074, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 1/69 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 R +L + P ++ +G P F V V + S A Sbjct: 339 FRTPTRDLSWLCRREGFEPPVARLISETGRLSRHPVFVVGVYSGRDKLGEASGSSLNEAR 398 Query: 213 QVAAAEVLK 221 A+A LK Sbjct: 399 IRASAAALK 407 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 3/93 (3%) Query: 3 ALRYSTLEKRIGY--AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +++ L R+ F +L + L H S + + L LG ++LG S L Sbjct: 132 SIKLHALRSRLSLPERFP-LQVLARTLVHPSADANPAFNNASLSILGRQLLGYYTSEWLI 190 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 + + + + + + VARE + Sbjct: 191 CTYPRLPMEVVFAAVEAYIGPKALATVAREWGI 223 >gi|313232439|emb|CBY24107.1| unnamed protein product [Oikopleura dioica] Length = 564 Score = 41.8 bits (96), Expect = 0.075, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 4/96 (4%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDP 187 + + L L++ H G + + S ++ Sbjct: 377 EQDYGYFNHLSITDNRLHQLCGQAGIPAPYQFLKDIIHKIHGPSGAEEKLNISSNTPNNT 436 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F + G +G SK+ A+ +AA +L + Sbjct: 437 TFHYTL---GNDVVEGRARSKKNAKHIAAQAMLAKL 469 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 16/34 (47%) Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +++I G G ++ A+ +AA E LK Sbjct: 327 KYIIKIDGKEYGSGEGANRTIAKNIAALETLKLL 360 >gi|308470958|ref|XP_003097711.1| hypothetical protein CRE_14205 [Caenorhabditis remanei] gi|308239829|gb|EFO83781.1| hypothetical protein CRE_14205 [Caenorhabditis remanei] Length = 436 Score = 41.8 bits (96), Expect = 0.075, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 5/72 (6%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQ 213 K L ++ Y+VT R D RF I G+ + R AEQ Sbjct: 358 PTPKMALHDYCVETKTPKATYEVTKRD----DKRFIATATIGEKKFRSGIGQPNVRMAEQ 413 Query: 214 VAAAEVLKREGI 225 VAA L I Sbjct: 414 VAALAALHGMNI 425 >gi|73960437|ref|XP_859173.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA helicase II) (NDH II) (DEAH-box protein 9) isoform 4 [Canis familiaris] Length = 223 Score = 41.8 bits (96), Expect = 0.076, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 G + +F V + G G +K+ A+ AA + Sbjct: 12 CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSNAARD 64 >gi|68489074|ref|XP_711650.1| likely mitochondrial ribosomal protein L15 [Candida albicans SC5314] gi|68489213|ref|XP_711581.1| likely mitochondrial ribosomal protein L15 [Candida albicans SC5314] gi|46432894|gb|EAK92357.1| likely mitochondrial ribosomal protein L15 [Candida albicans SC5314] gi|46432968|gb|EAK92428.1| likely mitochondrial ribosomal protein L15 [Candida albicans SC5314] Length = 220 Score = 41.8 bits (96), Expect = 0.076, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 3/69 (4%) Query: 2 SALRYSTLEKRIG--YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + S ++ +G Y + + + +TH S + + E+L +G ++L L + + Sbjct: 54 NETNISHIKSFLGDKYNIPD-EIALQVITHKSFGNGIKPYNEKLAAMGSKLLSLYFAKYV 112 Query: 60 FNHFDSAKE 68 N Sbjct: 113 TNQPCKHDN 121 >gi|330917728|ref|XP_003297934.1| hypothetical protein PTT_08495 [Pyrenophora teres f. teres 0-1] gi|311329130|gb|EFQ93969.1| hypothetical protein PTT_08495 [Pyrenophora teres f. teres 0-1] Length = 409 Score = 41.8 bits (96), Expect = 0.077, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 1/87 (1%) Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVE 194 + + + R +L + P ++ +G P F V V Sbjct: 286 FYRDHFLSRHLDISTIFDFRTPTRDLSWLCRREGFEPPVARLISETGRLSRHPVFVVGVY 345 Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + S A A+A LK Sbjct: 346 SGRDKLGEASGSSLDEARIRASAAALK 372 Score = 38.4 bits (87), Expect = 0.69, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 1/92 (1%) Query: 3 ALRYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61 +++ L R+ +L + L H S + + L LG ++LG S L Sbjct: 97 SIKLHALRSRLSLPPRFPLQVLARTLVHPSADANPAFNNASLSILGRQLLGYYTSEWLIC 156 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 + + + + + + VARE + Sbjct: 157 TYPRLPMEVVFAAVEAYIGPKALATVAREWGI 188 >gi|328850732|gb|EGF99893.1| hypothetical protein MELLADRAFT_112348 [Melampsora larici-populina 98AG31] Length = 530 Score = 41.8 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 6/84 (7%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68 LE + Y F N LL AL ++ + RLE++GD +L S ++ ++ Sbjct: 385 LENILRYTFDNIHLLRYAL-----GQFGKDEFRRLEWIGDALLADWSSLVMKKIQLKSQR 439 Query: 69 GELSVRFNSLVS-AETCSQVAREL 91 ++ ++ +T + Sbjct: 440 KLKVHTASTYLNANQTLWKWWVRW 463 >gi|224057014|ref|XP_002191685.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Taeniopygia guttata] Length = 1284 Score = 41.8 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 1/52 (1%) Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 +G F V + G G +K+ A+ AA + + Sbjct: 18 MPAYEIRAAGGRGRQTFLCEVRVEGFNYVGMGNSTNKKDAQSNAARDFINYL 69 >gi|68490780|ref|XP_710785.1| likely mitochondrial ribosomal protein L15 [Candida albicans SC5314] gi|68490807|ref|XP_710772.1| likely mitochondrial ribosomal protein L15 [Candida albicans SC5314] gi|46432015|gb|EAK91524.1| likely mitochondrial ribosomal protein L15 [Candida albicans SC5314] gi|46432029|gb|EAK91537.1| likely mitochondrial ribosomal protein L15 [Candida albicans SC5314] Length = 220 Score = 41.8 bits (96), Expect = 0.079, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 3/69 (4%) Query: 2 SALRYSTLEKRIG--YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + S ++ +G Y + + + +TH S + + E+L +G ++L L + + Sbjct: 54 NETNISHIKSFLGDKYNIPD-EIALQVITHKSFGNGIKPYNEKLAAMGSKLLSLYFAKYV 112 Query: 60 FNHFDSAKE 68 N Sbjct: 113 TNQPCKHDN 121 >gi|327268577|ref|XP_003219073.1| PREDICTED: hypothetical protein LOC100565234 [Anolis carolinensis] Length = 1126 Score = 41.5 bits (95), Expect = 0.083, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213 + + L E + + P + + + P++ F V ++G+ + +K+ A+ Sbjct: 1037 KHPVSALLEVCNKRRWSPPVFVLVNDNRPEYRKNFLFKVMVNGVEHKPTFVSPNKKHAKA 1096 Query: 214 VAAAEVLKREGI 225 VAA L+ G+ Sbjct: 1097 VAATVALQALGL 1108 >gi|119501793|ref|XP_001267653.1| RNase3 domain protein [Neosartorya fischeri NRRL 181] gi|119415819|gb|EAW25756.1| RNase3 domain protein [Neosartorya fischeri NRRL 181] Length = 127 Score = 41.5 bits (95), Expect = 0.084, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG 52 + +E+ IG+ F NR L +AL + ++ ++L +GD++LG Sbjct: 11 QLQAVEELIGFRFTNRHWLLEAL--QAAGLINRDRNKKLAIIGDKVLG 56 >gi|322511163|gb|ADX06476.1| hypothetical protein 162276054 [Organic Lake phycodnavirus 2] Length = 165 Score = 41.5 bits (95), Expect = 0.085, Method: Composition-based stats. Identities = 17/150 (11%), Positives = 40/150 (26%), Gaps = 6/150 (4%) Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 + L + + D + L + ++ Sbjct: 12 KNRCNYKKLGCLFESFLGALFLDTNETKDETFLMGNGTHYCQLFIENVYNALVDWNEILE 71 Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199 + + + + T + H + V G D+ F ++ + + Sbjct: 72 NDDNYKNIFQVKIQKEFKCTPEYKIIHQDEELRYTMGVYLCLGNDNCVSFDLLKSLDNIK 131 Query: 200 ------PAQGMDCSKRAAEQVAAAEVLKRE 223 G+ K+ AEQ+A + LK+ Sbjct: 132 SSNNIHFGTGVHKIKKKAEQLACLDALKKI 161 >gi|313224938|emb|CBY20730.1| unnamed protein product [Oikopleura dioica] Length = 686 Score = 41.5 bits (95), Expect = 0.086, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 17/37 (45%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 ++++V + G A K+ A++ A LKR Sbjct: 239 KNYSILVVVDGFEYAPAEAWKKKLAKEAACRNALKRI 275 >gi|313221521|emb|CBY32268.1| unnamed protein product [Oikopleura dioica] Length = 733 Score = 41.5 bits (95), Expect = 0.087, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 4/96 (4%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDP 187 + + L L++ H G + + S ++ Sbjct: 546 EQDYGYFNHLSITDNRLHQLCGQAGLPAPYQFLKDIIHKIHGPSGAEEKLNISSNTPNNT 605 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F + G +G SK+ A+ +AA +L + Sbjct: 606 TFHYTL---GNDVVEGRARSKKNAKHIAAQAMLAKL 638 Score = 38.0 bits (86), Expect = 0.96, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 16/34 (47%) Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +++I G G ++ A+ +AA E LK Sbjct: 496 KYIIKIDGKEYGSGEGANRTIAKNIAALETLKLL 529 >gi|291301908|ref|YP_003513186.1| ribonuclease II [Stackebrandtia nassauensis DSM 44728] gi|290571128|gb|ADD44093.1| ribonuclease II [Stackebrandtia nassauensis DSM 44728] Length = 617 Score = 41.5 bits (95), Expect = 0.087, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 5/70 (7%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL----APAQGMDCSKRAAEQ 213 +T GP H P FT V +G A G K+AA+ Sbjct: 536 PVMALNEYAQTGVITELAWDYDSDGPPHQPTFTCTVTATGDTGEPLSATGTGAGKQAAKT 595 Query: 214 VAAAEVLKRE 223 AAA L++ Sbjct: 596 SAAAR-LRKI 604 >gi|188593362|emb|CAO78750.1| Oikopleura double-stranded RNA-binding protein dgcr8 [Oikopleura dioica] Length = 768 Score = 41.5 bits (95), Expect = 0.087, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 4/96 (4%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDP 187 + + L L++ H G + + S ++ Sbjct: 581 EQDYGYFNHLSITDNRLHQLCGQAGLPAPYQFLKDIIHKIHGPSGAEEKLNISSNTPNNT 640 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F + G +G SK+ A+ +AA +L + Sbjct: 641 TFHYTL---GNDVVEGRARSKKNAKHIAAQAMLAKL 673 Score = 38.0 bits (86), Expect = 0.96, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 16/34 (47%) Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +++I G G ++ A+ +AA E LK Sbjct: 531 KYIIKIDGKEYGSGEGANRTIAKNIAALETLKLL 564 >gi|290985188|ref|XP_002675308.1| predicted protein [Naegleria gruberi] gi|284088903|gb|EFC42564.1| predicted protein [Naegleria gruberi] Length = 599 Score = 41.5 bits (95), Expect = 0.088, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 11/70 (15%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA--QGMDCSKRAAEQVAAAE--- 218 W+ + GP H F +++S L G +K+ A++ A + Sbjct: 517 WSQTFGQNMKPTYIETCYGPSHITSFRCEIDLSALKLTNQIGDGKTKKEAKKNACTKSCI 576 Query: 219 ------VLKR 222 LK+ Sbjct: 577 SLDQIGALKK 586 >gi|260447031|emb|CBG76444.1| OO_Ba0013J05-OO_Ba0033A15.31 [Oryza officinalis] Length = 1333 Score = 41.5 bits (95), Expect = 0.089, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 20/36 (55%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ V I G +G+ +++AA++ A L+ Sbjct: 728 QFSIEVRILGEKVGEGIGKTRKAAKRQAVNMSLRNL 763 >gi|222629251|gb|EEE61383.1| hypothetical protein OsJ_15551 [Oryza sativa Japonica Group] Length = 927 Score = 41.5 bits (95), Expect = 0.089, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 20/36 (55%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ V I G +G+ +++AA++ A L+ Sbjct: 664 QFSIEVRILGEKVGEGIGKTRKAAKRQAVNMSLRNL 699 >gi|218195257|gb|EEC77684.1| hypothetical protein OsI_16738 [Oryza sativa Indica Group] Length = 905 Score = 41.5 bits (95), Expect = 0.089, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 20/36 (55%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ V I G +G+ +++AA++ A L+ Sbjct: 664 QFSIEVRILGEKVGEGIGKTRKAAKRQAVNMSLRNL 699 >gi|215697502|dbj|BAG91496.1| unnamed protein product [Oryza sativa Japonica Group] gi|215706329|dbj|BAG93185.1| unnamed protein product [Oryza sativa Japonica Group] Length = 758 Score = 41.5 bits (95), Expect = 0.089, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 20/36 (55%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ V I G +G+ +++AA++ A L+ Sbjct: 545 QFSIEVRILGEKVGEGIGKTRKAAKRQAVNMSLRNL 580 >gi|116312020|emb|CAJ86376.1| OSIGBa0155K17.3 [Oryza sativa Indica Group] Length = 973 Score = 41.5 bits (95), Expect = 0.089, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 20/36 (55%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ V I G +G+ +++AA++ A L+ Sbjct: 732 QFSIEVRILGEKVGEGIGKTRKAAKRQAVNMSLRNL 767 >gi|115459562|ref|NP_001053381.1| Os04g0529500 [Oryza sativa Japonica Group] gi|113564952|dbj|BAF15295.1| Os04g0529500 [Oryza sativa Japonica Group] Length = 779 Score = 41.5 bits (95), Expect = 0.089, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 20/36 (55%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ V I G +G+ +++AA++ A L+ Sbjct: 566 QFSIEVRILGEKVGEGIGKTRKAAKRQAVNMSLRNL 601 >gi|38346621|emb|CAD41201.2| OSJNBa0074L08.12 [Oryza sativa Japonica Group] Length = 945 Score = 41.5 bits (95), Expect = 0.089, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 20/36 (55%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +F++ V I G +G+ +++AA++ A L+ Sbjct: 732 QFSIEVRILGEKVGEGIGKTRKAAKRQAVNMSLRNL 767 >gi|328785633|ref|XP_003250627.1| PREDICTED: dosage compensation regulator isoform 1 [Apis mellifera] Length = 1232 Score = 41.5 bits (95), Expect = 0.090, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 ++GP H RF + + G G +K+ A+ AA + Sbjct: 12 CTKNSKEPQFDVRQTGPKHRHRFLCELRVPGFDYVGAGNSTNKKDAQGNAARD 64 >gi|259155154|ref|NP_001158819.1| NF-kappa B repressing factor [Salmo salar] gi|223647554|gb|ACN10535.1| NF-kappa-B-repressing factor [Salmo salar] Length = 784 Score = 41.5 bits (95), Expect = 0.090, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%) Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH R+ V + G A G+ K+ + +AA E L Sbjct: 566 PDH--RWRCEVYLEGQYVASGIGP-KKTVKHIAAEEALATL 603 Score = 38.8 bits (88), Expect = 0.60, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + V + AQ SK+ ++ AA E +++ Sbjct: 459 WQCSVYLQDELVAQAKG-SKKTSKHTAAEEAVRKL 492 >gi|66510919|ref|XP_396525.2| PREDICTED: dosage compensation regulator isoform 2 [Apis mellifera] Length = 1239 Score = 41.5 bits (95), Expect = 0.090, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 ++GP H RF + + G G +K+ A+ AA + Sbjct: 12 CTKNSKEPQFDVRQTGPKHRHRFLCELRVPGFDYVGAGNSTNKKDAQGNAARD 64 >gi|158341217|ref|YP_001522419.1| hypothetical protein AM1_F0115 [Acaryochloris marina MBIC11017] gi|158311458|gb|ABW33069.1| hypothetical protein AM1_F0115 [Acaryochloris marina MBIC11017] Length = 157 Score = 41.5 bits (95), Expect = 0.091, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 48/133 (36%), Gaps = 6/133 (4%) Query: 90 ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 +L ++ + D + + + + +++ + + Q + Sbjct: 18 QLGFLDYLYPNVDPEDALIRLLERARNRAILKAEQQVHILHPRQEEAEQPETSPDQPISQ 77 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + ++ +LQE + P Y+ + S F +V+ GL G SK+ Sbjct: 78 VDEQVKNPIGQLQELCQKQQISLPRYEFSEISEG-----FRCLVQSMGLQ-GVGEGASKK 131 Query: 210 AAEQVAAAEVLKR 222 A+ AA +LKR Sbjct: 132 KAKMGAAEMLLKR 144 >gi|195352556|ref|XP_002042778.1| GM17665 [Drosophila sechellia] gi|194126809|gb|EDW48852.1| GM17665 [Drosophila sechellia] Length = 473 Score = 41.5 bits (95), Expect = 0.092, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 1/40 (2%) Query: 186 DPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224 D F + + + +K+ AEQ AA L G Sbjct: 419 DKLFRSICTYDDQRFSSSYWEKNKKQAEQGAALVALLHLG 458 >gi|82469806|gb|ABB77161.1| R2D2 [Drosophila orosa] Length = 304 Score = 41.5 bits (95), Expect = 0.095, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 5/73 (6%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-- 207 RD EL+++ P ++ +SG + P F ++ + S Sbjct: 80 MTNLNRDMLKELRDYCVRNEMPLPIIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDK 136 Query: 208 KRAAEQVAAAEVL 220 K+ A Q AA ++L Sbjct: 137 KKDARQRAAIDML 149 Score = 38.0 bits (86), Expect = 0.98, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + V + + G SKR A+ +AAA +L++ Sbjct: 19 YVCKVSMMEIESF-GNGRSKRDAKHLAAANILRKI 52 >gi|290562119|gb|ADD38456.1| 39S ribosomal protein L44, mitochondrial [Lepeophtheirus salmonis] Length = 328 Score = 41.5 bits (95), Expect = 0.098, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 71/233 (30%), Gaps = 15/233 (6%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI------------SHSYQESYERLEFLGDRIL 51 + L R+ +F N L+ +AL + + S RL LG ++ Sbjct: 74 VELFALGARLRESF-NFELVREALRDPTFYLVSMKEKIDLSLKDSEASNTRLVELGREVI 132 Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 ++ L F + L+S + A + L + S + + Sbjct: 133 SASLNDFLTKTFPKVPSDGIIAFQEYLMSPYVLASKALHIGLKDLVV-SQEYPPSKNTLS 191 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 + A + + ++ V L ++ L + Sbjct: 192 NAFCALIGAHSESGNNRRQSYQLVVDLVATQIIGMDLHDVWKIQNPMDYLSKILAENNMK 251 Query: 172 TPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++ + SG + + V + + + S A +AA + L+R Sbjct: 252 EPEPRLQWASGKNTLSASYHVGIYSNQSLIGECTGESIETARDMAALDTLRRM 304 >gi|164606342|gb|ABY62316.1| Dicer-2-like protein [Bombyx mori] Length = 149 Score = 41.5 bits (95), Expect = 0.098, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 16/26 (61%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSI 32 + +EK + Y F + + L AL+HSS Sbjct: 123 ADVEKILNYTFKDSTFLLNALSHSSY 148 >gi|327277433|ref|XP_003223469.1| PREDICTED: ATP-dependent RNA helicase A-like [Anolis carolinensis] Length = 1253 Score = 41.5 bits (95), Expect = 0.099, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 1/58 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223 G +F V ++G G +K+ A+ AA + L Sbjct: 12 CGKRKLTPAYEIRAVGNKTRQKFMCEVRVAGFNYIGMGNSTNKKDAQTNAARDFLNYL 69 >gi|195034168|ref|XP_001988838.1| GH10357 [Drosophila grimshawi] gi|193904838|gb|EDW03705.1| GH10357 [Drosophila grimshawi] Length = 317 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KR 209 RD EL+++ + P ++ +SG P F ++ + S K+ Sbjct: 98 NMNRDMLKELRDYCVRQDMPLPTIEIVQQSGTPSAPEFVACCSVASIKR---YGKSDKKK 154 Query: 210 AAEQVAAAEVL 220 A Q AA E+L Sbjct: 155 DARQRAAIEML 165 Score = 38.8 bits (88), Expect = 0.57, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + V + + A G SKR A+ +AA ++++ Sbjct: 34 YICKVVLMDVE-AYGNGRSKRDAKHLAATNIMRKL 67 >gi|149637182|ref|XP_001509697.1| PREDICTED: similar to NF-kappaB repressing factor [Ornithorhynchus anatinus] Length = 680 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 6/47 (12%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE-----GIWT 227 + + V + A+G SK+ ++ AA E L+ I T Sbjct: 362 NRTWRCRVYLQDHCLAEGYG-SKKTSKHAAADEALRILQKTQSNIPT 407 >gi|302788362|ref|XP_002975950.1| hypothetical protein SELMODRAFT_104739 [Selaginella moellendorffii] gi|300156226|gb|EFJ22855.1| hypothetical protein SELMODRAFT_104739 [Selaginella moellendorffii] Length = 479 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 17/121 (14%) Query: 8 TLEKRIGYA--FANRSL-------------LEKALTHSSI--SHSYQESYERLEFLGDRI 50 + +GY + +L L+ H S + + YERLEF+G +I Sbjct: 293 KVMDILGYPLDVRDENLDMTEAREIELGLGLQLCFMHPSAYKNDHPRFCYERLEFIGSKI 352 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 ++++ L A L+ + C + R L FI + + + Sbjct: 353 QDVVMAERLLMKHLDAPAIFLNRIHRGITINRICGRRLRMKRLHKFITYGEERQLEFARC 412 Query: 111 M 111 Sbjct: 413 H 413 >gi|328722076|ref|XP_003247474.1| PREDICTED: hypothetical protein LOC100169140 isoform 2 [Acyrthosiphon pisum] Length = 342 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 12/113 (10%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + +A L E+ ++ K K ++ Sbjct: 213 FASLAMHNLIHQWELQPVSKAINLQEEQPNVLKSPPKPKAGAMRKFPEDPKNCNPIQLIN 272 Query: 180 RSGPDHD-----------PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + P F V EI + G +K+AA++ +K Sbjct: 273 QMKPGVKFIETVISSKTPSVFQVKCEIDNIPF-TGQGSTKKAAKKECCIAAIK 324 >gi|322705596|gb|EFY97181.1| hypothetical protein MAA_07477 [Metarhizium anisopliae ARSEF 23] Length = 200 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 5/51 (9%) Query: 7 STLEKRIGYAFANRSLLEKALTH-----SSISHSYQESYERLEFLGDRILG 52 + +E + Y F + +LLE+AL + ++ + L +GD +L Sbjct: 4 NQIEHALQYKFKDPALLEEALVAAGAGPKKAKTAREKGNKVLALIGDALLR 54 >gi|302698221|ref|XP_003038789.1| expressed protein [Schizophyllum commune H4-8] gi|300112486|gb|EFJ03887.1| expressed protein [Schizophyllum commune H4-8] Length = 409 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 19/37 (51%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + +V + +G+ +G +K+ A++ AA + G Sbjct: 371 HWIMVCKANGIPKGRGFGKTKQIAKEFAARQAFTALG 407 >gi|221104212|ref|XP_002155760.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 363 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 17/38 (44%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERL 43 + R+ F + L+ AL+HSS + E+L Sbjct: 85 IKAFQFRLNTHFKDEGLMISALSHSSFVDELKLFNEQL 122 >gi|255729534|ref|XP_002549692.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240132761|gb|EER32318.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 390 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 14/34 (41%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 P+F V + +G+ S + AE A L Sbjct: 320 PQFLAGVFVGSEKLGEGIGGSLKEAETRATVNAL 353 >gi|302770230|ref|XP_002968534.1| hypothetical protein SELMODRAFT_145591 [Selaginella moellendorffii] gi|300164178|gb|EFJ30788.1| hypothetical protein SELMODRAFT_145591 [Selaginella moellendorffii] Length = 473 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 17/121 (14%) Query: 8 TLEKRIGYA--FANRSL-------------LEKALTHSSI--SHSYQESYERLEFLGDRI 50 + +GY + +L L+ H S + + YERLEF+G +I Sbjct: 287 KVMDILGYPLDVRDENLDMTEAREIELGLGLQLCFMHPSAYKNDHPRFCYERLEFIGSKI 346 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 ++++ L A L+ + C + R L FI + + + Sbjct: 347 QDVVMAERLLMKHLDAPAIFLNRIHRGITINRICGRRLRMKRLHKFITYGEERQLEFARC 406 Query: 111 M 111 Sbjct: 407 H 407 >gi|328722074|ref|XP_001945290.2| PREDICTED: hypothetical protein LOC100169140 isoform 1 [Acyrthosiphon pisum] Length = 381 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 12/113 (10%) Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179 + +A L E+ ++ K K ++ Sbjct: 252 FASLAMHNLIHQWELQPVSKAINLQEEQPNVLKSPPKPKAGAMRKFPEDPKNCNPIQLIN 311 Query: 180 RSGPDHD-----------PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + P F V EI + G +K+AA++ +K Sbjct: 312 QMKPGVKFIETVISSKTPSVFQVKCEIDNIPF-TGQGSTKKAAKKECCIAAIK 363 >gi|255085362|ref|XP_002505112.1| predicted protein [Micromonas sp. RCC299] gi|226520381|gb|ACO66370.1| predicted protein [Micromonas sp. RCC299] Length = 514 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%) Query: 190 TVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T + G +G +K+ A AA + L+ Sbjct: 415 TATCILDDGETIGRGRGVNKKRAIMEAARDALRHL 449 >gi|222619424|gb|EEE55556.1| hypothetical protein OsJ_03820 [Oryza sativa Japonica Group] Length = 511 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 52/186 (27%), Gaps = 14/186 (7%) Query: 22 LLEKALTH--SSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 LL A H +S + + RL FLG +L L + G + R Sbjct: 142 LLYLAFQHLDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 201 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 +L+ + + L + + DL K + V +L A+YL G+ Sbjct: 202 FALIGKRAIPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEV 261 Query: 136 GT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDP 187 F R ++ + ++ P H Sbjct: 262 YRVLFEAFGMDPEDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPR 321 Query: 188 RFTVVV 193 F V Sbjct: 322 LFRACV 327 >gi|218189252|gb|EEC71679.1| hypothetical protein OsI_04153 [Oryza sativa Indica Group] Length = 559 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 52/186 (27%), Gaps = 14/186 (7%) Query: 22 LLEKALTH--SSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 LL A H +S + + RL FLG +L L + G + R Sbjct: 164 LLYLAFQHLDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 223 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 +L+ + + L + + DL K + V +L A+YL G+ Sbjct: 224 FALIGKRAIPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEV 283 Query: 136 GT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDP 187 F R ++ + ++ P H Sbjct: 284 YRVLFEAFGMDPEDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPR 343 Query: 188 RFTVVV 193 F V Sbjct: 344 LFRACV 349 >gi|115440603|ref|NP_001044581.1| Os01g0810100 [Oryza sativa Japonica Group] gi|20160696|dbj|BAB89639.1| unknown protein [Oryza sativa Japonica Group] gi|113534112|dbj|BAF06495.1| Os01g0810100 [Oryza sativa Japonica Group] gi|215701330|dbj|BAG92754.1| unnamed protein product [Oryza sativa Japonica Group] gi|215704464|dbj|BAG93898.1| unnamed protein product [Oryza sativa Japonica Group] Length = 533 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 52/186 (27%), Gaps = 14/186 (7%) Query: 22 LLEKALTH--SSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 LL A H +S + + RL FLG +L L + G + R Sbjct: 164 LLYLAFQHLDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 223 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 +L+ + + L + + DL K + V +L A+YL G+ Sbjct: 224 FALIGKRAIPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEV 283 Query: 136 GT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDP 187 F R ++ + ++ P H Sbjct: 284 YRVLFEAFGMDPEDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPR 343 Query: 188 RFTVVV 193 F V Sbjct: 344 LFRACV 349 >gi|312095309|ref|XP_003148313.1| hypothetical protein LOAG_12753 [Loa loa] gi|307756522|gb|EFO15756.1| hypothetical protein LOAG_12753 [Loa loa] Length = 265 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 8/25 (32%), Positives = 10/25 (40%) Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ A+ AA LK Sbjct: 5 VLGTGCGNSKKTAKLDAARNALKVL 29 >gi|291390365|ref|XP_002711677.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog [Oryctolagus cuniculus] Length = 493 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 50/181 (27%), Gaps = 2/181 (1%) Query: 47 GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106 G R L ++ + + + E L A+ Sbjct: 256 GLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESSQGRLLHAAQSSQEICEAFG 315 Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166 + +F + + L + A+K + + + Sbjct: 316 LGAFYKEMTQKLDARRAELLARTPKETKEPAEDTSGVIKMAVKFDRRAYAPQITPKMCLL 375 Query: 167 AKFGVTPEYKVTFRS-GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224 + T+ + D F VV ++ + D SK+ AEQ AA L+ +G Sbjct: 376 EWCRREKLAQPTYETVQRPLDRLFCSVVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQG 435 Query: 225 I 225 + Sbjct: 436 L 436 >gi|254569420|ref|XP_002491820.1| hypothetical protein [Pichia pastoris GS115] gi|238031617|emb|CAY69540.1| Hypothetical protein PAS_chr2-2_0365 [Pichia pastoris GS115] gi|328351680|emb|CCA38079.1| hypothetical protein PP7435_Chr2-0386 [Pichia pastoris CBS 7435] Length = 349 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 64/217 (29%), Gaps = 10/217 (4%) Query: 5 RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 L K F N++LL K L + S ++ + L +LG + L+S L Sbjct: 134 DIDRLPKLKNETFENKALLHKKLV---SNDSSVQTNDSLVYLGSKFCHCLVSFKLNELHP 190 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 S + V L R + + F + A+ + +A Sbjct: 191 SLDAE----LLDCAVQEVLHFNNVHIWALRLNFRELLESKFPAKQFRPKVMAECFMAYVA 246 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 AL ++ G + + W + ++ + + A + Sbjct: 247 ALKIETGSDYNLLTLLTQWILKLASEKIYKLRVENLVDRSAKDSLHKLMGPMRYATAFNG 306 Query: 185 HDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVL 220 F + G G +K +E +A L Sbjct: 307 SK--FISKCLNNKGEVLGHGSGYNKTDSELRSAMHAL 341 >gi|326673261|ref|XP_003199818.1| PREDICTED: adenosine deaminase domain-containing protein 1 [Danio rerio] Length = 597 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 14/35 (40%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F I G+ GM +K+ A A+ LK Sbjct: 145 FAFCAVIDGIQYKTGMGTTKKEARAKASELALKEL 179 >gi|148744644|gb|AAI42886.1| LOC564818 protein [Danio rerio] Length = 575 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 14/35 (40%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F I G+ GM +K+ A A+ LK Sbjct: 123 FAFCAVIDGIQYKTGMGTTKKEARAKASELALKEL 157 >gi|145244913|ref|XP_001394726.1| hypothetical protein ANI_1_2256094 [Aspergillus niger CBS 513.88] gi|134079418|emb|CAK40799.1| unnamed protein product [Aspergillus niger] Length = 228 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 P+F + + G+ A G +K+ A+ +AA V R G+ Sbjct: 188 PKFRITISYKGIQ-ASGEGKTKKLAKHIAAKGVCHRLGL 225 >gi|297699046|ref|XP_002826610.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine synthase 2-like [Pongo abelii] Length = 493 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 4/76 (5%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKR 209 + K L EW + P Y+ R D F+ +V ++ + D SK+ Sbjct: 364 YPAQITPKMCLLEWCRREKLAQPVYETVQR---PVDRLFSSIVTVAEQKYQSTLWDKSKK 420 Query: 210 AAEQVAAAEVLKREGI 225 AEQ AA L+ +G+ Sbjct: 421 LAEQAAAIVCLRSQGL 436 >gi|320583778|gb|EFW97991.1| Mitochondrial ribosomal protein of the large subunit [Pichia angusta DL-1] Length = 237 Score = 41.1 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Query: 9 LEKRI--GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 L+ ++ Y ++ LL + +TH S +H Q RL + G ++ L + Sbjct: 72 LQSKLQGKYELPDK-LLLQIITHKSFAHGTQPYNARLSYFGRELIQLSAAKY 122 >gi|158341356|ref|YP_001522521.1| double-stranded RNA binding domain-containing protein [Acaryochloris marina MBIC11017] gi|158311597|gb|ABW33207.1| double-stranded RNA binding motif domain protein [Acaryochloris marina MBIC11017] Length = 148 Score = 41.1 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 51/151 (33%), Gaps = 6/151 (3%) Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + ++ +++ + D + + + + + + + Sbjct: 1 MRSQHSHNLNIHITEEQIGFLAYLFPNDDPEDALVKLLERARKQAIRQAEKQIRVLHLGQ 60 Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193 + + ++ + + + +LQE + P Y + R P+ F+ V Sbjct: 61 ESEENQGEIPEKPISQGDDWVENPIGQLQELCQKQQITLPRYGFSER--PNG---FSCNV 115 Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + GL G SK+ A+ AA E+L + Sbjct: 116 QAMGLQE-NGEGSSKQEAKTKAARELLSKIN 145 >gi|260828967|ref|XP_002609434.1| hypothetical protein BRAFLDRAFT_124637 [Branchiostoma floridae] gi|229294790|gb|EEN65444.1| hypothetical protein BRAFLDRAFT_124637 [Branchiostoma floridae] Length = 1237 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%) Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 G RF V + G G SK+ A+ AA + Sbjct: 27 GSKQRQRFVCEVRVPGYDYVGAGNSTSKKDAQTNAARD 64 >gi|168984491|emb|CAO98759.1| double-stranded RNA activated protein kinase 1 [Gasterosteus aculeatus] Length = 497 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 15/36 (41%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210 Y+ G DH FTV + G G+ +KR Sbjct: 19 YEDVGCVGLDHIKTFTVRAVVDGKPYPDGVGKNKRE 54 >gi|289739511|gb|ADD18503.1| ultrabithorax binding protein 1 [Glossina morsitans morsitans] Length = 411 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F VV ++G +G SK AA+ A + L+ Sbjct: 187 FVTVVTVNGNQY-EGRGNSKMAAKNNACEKALR 218 >gi|242018043|ref|XP_002429492.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212514430|gb|EEB16754.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 426 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 2/65 (3%) Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218 + E + K F GP++ + + A G + + +++ AA Sbjct: 186 HPISEIQRSAIINRVTPKWCFDVGPENSKI--CKIYFNNTFIASGKGKTTKLSKENAAIS 243 Query: 219 VLKRE 223 + + Sbjct: 244 AISKL 248 >gi|321463684|gb|EFX74698.1| hypothetical protein DAPPUDRAFT_251621 [Daphnia pulex] Length = 308 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAK 67 +EK +GY F + S L A+ + + + +LE +GDR L L+I + Sbjct: 16 IEKMLGYRFTDESWLHMAIQQPTANVRNAAKEAGKLELIGDRALDLIIVDECESRKPEYG 75 Query: 68 EGELSVRFNSLVSAETCSQVARELDLASFIRV 99 G+L+ ++L T + +A + +L ++ Sbjct: 76 AGQLTTVKSALTCNNTLAVIAIKKNLHLVMQQ 107 >gi|260099980|pdb|3HTX|A Chain A, Crystal Structure Of Small Rna Methyltransferase Hen1 gi|260099983|pdb|3HTX|D Chain D, Crystal Structure Of Small Rna Methyltransferase Hen1 Length = 950 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 17/37 (45%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + +++ + + K+ +EQ AA L + GI Sbjct: 59 YRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDKLGI 95 >gi|15638615|gb|AAL05056.1|AF411383_1 HEN1 [Arabidopsis thaliana] Length = 942 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 17/37 (45%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + +++ + + K+ +EQ AA L + GI Sbjct: 51 YRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDKLGI 87 >gi|3135493|gb|AAC97105.1| unknown [Arabidopsis thaliana] Length = 942 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 17/37 (45%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + +++ + + K+ +EQ AA L + GI Sbjct: 51 YRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDKLGI 87 >gi|18415589|ref|NP_567616.1| HEN1 (HUA ENHANCER 1); RNA methyltransferase [Arabidopsis thaliana] gi|75333381|sp|Q9C5Q8|HEN1_ARATH RecName: Full=Small RNA 2'-O-methyltransferase; AltName: Full=Protein CORYMBOSA 2; AltName: Full=Protein HUA ENHANCER 1; AltName: Full=S-adenosylmethionine-dependent RNA methyltransferase HEN1 gi|13241746|gb|AAK16435.1|AF327068_1 CORYMBOSA2 [Arabidopsis thaliana] gi|332658974|gb|AEE84374.1| RNA methylase HUA ENHANCER 1 [Arabidopsis thaliana] gi|332658975|gb|AEE84375.1| RNA methylase HUA ENHANCER 1 [Arabidopsis thaliana] Length = 942 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 17/37 (45%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + +++ + + K+ +EQ AA L + GI Sbjct: 51 YRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDKLGI 87 >gi|261328153|emb|CBH11130.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 382 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 12/108 (11%) Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + L E R + ++ + ++ + R GP Sbjct: 273 SQELRKAREEKQEKKYMSDLLRDECTTRWPHTPVHKSVIFSLEEQQAETVGGRPGRKGP- 331 Query: 185 HDPRFTVVVEI---SGLAPAQGMDC------SKRAAEQVAAAEVLKRE 223 + VE+ +G +K+ AE AA L+ Sbjct: 332 --RMYLATVELPLLNGKKGGTASFKAPQWCTTKKDAENAAAEVALRAL 377 >gi|72389150|ref|XP_844870.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62358643|gb|AAX79101.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70801404|gb|AAZ11311.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 380 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 12/108 (11%) Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184 + L E R + ++ + ++ + R GP Sbjct: 271 SQELRKAREEKQEKKYMSDLLRDECTTRWPHTPVHKSVIFSLEEQQAETVGGRPGRKGP- 329 Query: 185 HDPRFTVVVEI---SGLAPAQGMDC------SKRAAEQVAAAEVLKRE 223 + VE+ +G +K+ AE AA L+ Sbjct: 330 --RMYLATVELPLLNGKKGGTASFKAQQWCTTKKDAENAAAEVALRAL 375 >gi|312073196|ref|XP_003139411.1| dihydrouridine synthase domain-containing protein [Loa loa] gi|307765423|gb|EFO24657.1| dihydrouridine synthase domain-containing protein [Loa loa] Length = 439 Score = 41.1 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 186 DPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLKREG 224 D R+ +E+ + + +K+ AEQVAA L G Sbjct: 388 DKRYEATIEVDSRKFSSRIGQPNKKMAEQVAALAALVGLG 427 >gi|332227763|ref|XP_003263057.1| PREDICTED: tRNA-dihydrouridine synthase 2 [Nomascus leucogenys] Length = 540 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225 D F+ +V ++ + D SK+ AEQ AA L+ +G+ Sbjct: 443 DRLFSSIVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 483 >gi|321450358|gb|EFX62407.1| hypothetical protein DAPPUDRAFT_270469 [Daphnia pulex] Length = 140 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 18/38 (47%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 D F VV+E+ G S +AA+ AA ++R Sbjct: 55 DGNFHVVLEVQNTQYFHGSGPSLKAAKTTAAKLGIRRI 92 >gi|194383804|dbj|BAG59260.1| unnamed protein product [Homo sapiens] Length = 458 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225 D F+ +V ++ + D SK+ AEQ AA L+ +G+ Sbjct: 361 DRLFSSIVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 401 >gi|90083447|dbj|BAE90806.1| unnamed protein product [Macaca fascicularis] Length = 493 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225 D F+ +V ++ + D SK+ AEQ AA L+ +G+ Sbjct: 396 DRLFSSIVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 436 >gi|114663254|ref|XP_001166802.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 5 [Pan troglodytes] Length = 477 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225 D F+ +V ++ + D SK+ AEQ AA L+ +G+ Sbjct: 380 DRLFSSIVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 420 >gi|114663256|ref|XP_001166706.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 2 [Pan troglodytes] Length = 406 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225 D F+ +V ++ + D SK+ AEQ AA L+ +G+ Sbjct: 309 DRLFSSIVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 349 >gi|114663240|ref|XP_001166638.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 1 [Pan troglodytes] gi|114663242|ref|XP_001166736.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 3 [Pan troglodytes] gi|114663244|ref|XP_001166768.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 4 [Pan troglodytes] gi|114663246|ref|XP_001166835.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 6 [Pan troglodytes] gi|114663248|ref|XP_001166866.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 7 [Pan troglodytes] gi|114663250|ref|XP_001166896.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 8 [Pan troglodytes] gi|114663252|ref|XP_001166928.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 9 [Pan troglodytes] Length = 493 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225 D F+ +V ++ + D SK+ AEQ AA L+ +G+ Sbjct: 396 DRLFSSIVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 436 >gi|109128993|ref|XP_001097732.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Macaca mulatta] Length = 492 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225 D F+ +V ++ + D SK+ AEQ AA L+ +G+ Sbjct: 395 DRLFSSIVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 435 >gi|47201631|emb|CAF92245.1| unnamed protein product [Tetraodon nigroviridis] Length = 65 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 186 DPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225 D F VV ++ + SK+ AEQ AA L+ G+ Sbjct: 5 DRSFQSVVTVAHKKYRSSLWEKSKKLAEQAAAIVCLRVLGL 45 >gi|465431|sp|P34717|NSP3_ROTBS RecName: Full=Non-structural protein 3; Short=NSP3; Contains: RecName: Full=p38; Contains: RecName: Full=p8 Length = 402 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 D + +++ G A A G CSK+ A++ AA +L + G Sbjct: 362 DGSIMYICYLKV-GSAEATGNGCSKKEAKRRAAVSILDQLG 401 >gi|8923374|ref|NP_060273.1| tRNA-dihydrouridine synthase 2-like [Homo sapiens] gi|73620832|sp|Q9NX74|DUS2L_HUMAN RecName: Full=tRNA-dihydrouridine synthase 2-like; Short=hDUS2; AltName: Full=Up-regulated in lung cancer protein 8; Short=URLC8 gi|7020473|dbj|BAA91143.1| unnamed protein product [Homo sapiens] gi|16306804|gb|AAH06527.1| Dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) [Homo sapiens] gi|71006842|dbj|BAE07219.1| up-regulated in lung cancer 8 [Homo sapiens] gi|119603613|gb|EAW83207.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens] gi|119603614|gb|EAW83208.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens] gi|119603615|gb|EAW83209.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens] gi|158254588|dbj|BAF83267.1| unnamed protein product [Homo sapiens] gi|312152458|gb|ADQ32741.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) [synthetic construct] Length = 493 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225 D F+ +V ++ + D SK+ AEQ AA L+ +G+ Sbjct: 396 DRLFSSIVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 436 >gi|291222158|ref|XP_002731085.1| PREDICTED: ATP-dependent RNA helicase A-like protein-like [Saccoglossus kowalevskii] Length = 1325 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 1/38 (2%) Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 G H RF V + G SK+ A+ A + Sbjct: 27 GSKHRQRFMCEVRVQDYDYIGVGNSTSKKDAQANCARD 64 >gi|149412383|ref|XP_001508965.1| PREDICTED: similar to 65 kD protein kinase [Ornithorhynchus anatinus] Length = 546 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%) Query: 151 GKFRRDAKTELQEWAHAKFGV--TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + + Y+ ++GPDH+ +FT+ V I G + S Sbjct: 1 MANAPEPRIHSAHLHEYCQKRGLKLVYRDVSKTGPDHNLQFTIQVIIEGREFPEASGSS 59 >gi|327409791|ref|YP_004347211.1| putative ribonuclease III [Lausannevirus] gi|326784965|gb|AEA07099.1| putative ribonuclease III [Lausannevirus] Length = 319 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 24/67 (35%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N + A TH ++ +YE E LGD ++ I + + + E R Sbjct: 29 NNLAKFRVAFTHKTVQSGDDNNYELYELLGDSLVNAAILRYISSIRPDITDVETLTRIKH 88 Query: 78 LVSAETC 84 + + Sbjct: 89 YIQSRAF 95 >gi|260833280|ref|XP_002611585.1| hypothetical protein BRAFLDRAFT_117159 [Branchiostoma floridae] gi|229296956|gb|EEN67595.1| hypothetical protein BRAFLDRAFT_117159 [Branchiostoma floridae] Length = 351 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 62/223 (27%), Gaps = 20/223 (8%) Query: 19 NRSLLEKALTHSSISHSYQ-----------------ESYERLEFLGDRILGLLISTLLFN 61 N S L A S + + +L G ++ I + L Sbjct: 98 NLSTLRAAFIDRSYVKEEEERRRELSLPLEDVKLDMQDNSQLAEQGWQVTTNYIHSFLRA 157 Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121 F + + + + + +A L + IR S+ + V+ + Sbjct: 158 EFPLLPDEGVKAIHDYVTQEDMLVWIANHLGVKDLIRCSTFPIPP--PVTKQVFLAVIGA 215 Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + FV + + + + L E PE +V +S Sbjct: 216 VNHDQGSQRAETFVHDFVVAQLVGKDVNAMWDIPNPMGMLAEMLQKAGKGEPEPRVINQS 275 Query: 182 GPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 G + P F V V + + + A + AA L Sbjct: 276 GANTVTPVFFVGVYSNKELLGEASGDTMPLAVEEAARVALANM 318 >gi|301775697|ref|XP_002923269.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Ailuropoda melanoleuca] Length = 122 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225 D F VV ++ + D SK+ AEQ AA L+ G+ Sbjct: 25 DRLFCSVVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSRGL 65 >gi|73957464|ref|XP_546866.2| PREDICTED: similar to dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Canis familiaris] Length = 560 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225 D F VV ++ + D SK+ AEQ AA L+ G+ Sbjct: 463 DRLFCSVVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSRGL 503 >gi|223992605|ref|XP_002285986.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977301|gb|EED95627.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 711 Score = 40.7 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 7/23 (30%), Positives = 12/23 (52%) Query: 201 AQGMDCSKRAAEQVAAAEVLKRE 223 G +K+ A+ AA +LK+ Sbjct: 680 GTGEGTTKKQAQHKAAMIILKQL 702 >gi|221109699|ref|XP_002169974.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 349 Score = 40.7 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 37/221 (16%) Query: 6 YSTLEKRIGYAFANRSLLEKALT--HSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63 + ++ +G + +L++ LT HS + S + + + + N+ Sbjct: 23 FDDIKNILGI--HDSNLVQGLLTDLHSQYLIEFT-SNQHYRLI---------TGIYHNYP 70 Query: 64 DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 S +V+ + ++A + S+ + + + +S + Sbjct: 71 APMNNINYSDNVAPMVNQPNSYNINYGENVAPMVNPSNSYNVNYGESIQQQMINQPKSAV 130 Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 +YL G + ++ + + T G Sbjct: 131 PVIYLPGTNKFCSYKNSLQEY----CQKSRLPTPSYKVVLSGPGMYIGNVTFNNTLVHG- 185 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 TV I + AE AA E LK+ G Sbjct: 186 ------TVAYRI------------IKEAENNAAFEALKQLG 208 >gi|195391980|ref|XP_002054637.1| GJ24564 [Drosophila virilis] gi|194152723|gb|EDW68157.1| GJ24564 [Drosophila virilis] Length = 321 Score = 40.7 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 69/232 (29%), Gaps = 19/232 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRI 50 KR+ F LL+ A T + +H QE +L G I Sbjct: 67 LFAFGKRLNEEFQ-LPLLQTAFTQRTYAHQEQERQRMLGIAEADLQTADNSQLAAKGAHI 125 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + L + + L+ ET + V+ L I + Sbjct: 126 AKAYVEAYLQHALPKVPSAGHQAIASYLLGTETLAHVSTHLGTKELIFSTEYP--PSSET 183 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 + ++ +L + ++ F+ Q+ L L E + Sbjct: 184 LAQTLQAIIGALADSSGVERAFLFVRDFICTQLNQKDLLEIWTPEQPLQLLSEVCTERQL 243 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 PE ++ G + F V + + +G + + A + AA + L+ Sbjct: 244 GEPEPRLLGDCGKNTVLAAFQVGIYANRQLLGKGFGENVQTATETAAIDALQ 295 >gi|146318846|ref|YP_001198558.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33] gi|145689652|gb|ABP90158.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33] Length = 42 Score = 40.7 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ 37 M L ++ L G F++ +LLE A TH+S ++ ++ Sbjct: 1 MKDL-HAKLLADFGIDFSDLNLLETAFTHTSYANEHR 36 >gi|289740327|gb|ADD18911.1| mitochondrial ribosomal protein L44 [Glossina morsitans morsitans] Length = 325 Score = 40.7 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 75/238 (31%), Gaps = 27/238 (11%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---------------ESYERLEFLGDRI 50 KR+ F LL+ ALT S + + L G R+ Sbjct: 67 LFAFGKRLNEDFQVP-LLQTALTQESYVAKEKLKQEELGVENADIQLKHNAELAEHGQRL 125 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 I + + + L++ +T + VA L + + + Sbjct: 126 AKAYIEAFVAHSLPKMPAEGHKAVTSYLLTVDTLAHVALHLGMKELLMDADYPPSSDA-- 183 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK----QRALKSGKFRRDAKTELQEWAH 166 + + ++I L G+E A +FV + Q+ L + L++ Sbjct: 184 ----MSRSLLAVIGCLQQSSGLERAFSFVRDFICTQLNQKDLMEIWHIDKPEEVLKQVCR 239 Query: 167 AKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 K PE ++ G + + V + + +G A Q+AA + L+ Sbjct: 240 QKGISEPEPRLIADCGRNTILAAYFVGLYSNKKLLGKGFGEDINTATQLAALDALQTI 297 >gi|149038073|gb|EDL92433.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) (predicted), isoform CRA_b [Rattus norvegicus] Length = 380 Score = 40.7 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKR 209 + KT L EW + P Y+ R D F VV ++ + D SK+ Sbjct: 251 YPPQITPKTCLLEWCRREKLPQPVYETVQR---PIDRMFCSVVTVAEQKYQSTLWDKSKK 307 Query: 210 AAEQVAAAEVLKREGI 225 AEQ AA L+ +G+ Sbjct: 308 LAEQTAAIVCLRSQGL 323 >gi|157818491|ref|NP_001099651.1| tRNA-dihydrouridine synthase 2-like [Rattus norvegicus] gi|149038072|gb|EDL92432.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) (predicted), isoform CRA_a [Rattus norvegicus] gi|165971659|gb|AAI58729.1| Dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) [Rattus norvegicus] Length = 493 Score = 40.7 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKR 209 + KT L EW + P Y+ R D F VV ++ + D SK+ Sbjct: 364 YPPQITPKTCLLEWCRREKLPQPVYETVQR---PIDRMFCSVVTVAEQKYQSTLWDKSKK 420 Query: 210 AAEQVAAAEVLKREGI 225 AEQ AA L+ +G+ Sbjct: 421 LAEQTAAIVCLRSQGL 436 >gi|301776895|ref|XP_002923866.1| PREDICTED: adenosine deaminase domain-containing protein 1-like isoform 2 [Ailuropoda melanoleuca] Length = 566 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 102 HQFAQMQRVHLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161 Query: 223 E 223 Sbjct: 162 L 162 >gi|301776893|ref|XP_002923865.1| PREDICTED: adenosine deaminase domain-containing protein 1-like isoform 1 [Ailuropoda melanoleuca] Length = 577 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 102 HQFAQMQRVHLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161 Query: 223 E 223 Sbjct: 162 L 162 >gi|149699255|ref|XP_001498775.1| PREDICTED: similar to tRNA-dihydrouridine synthase 2-like (hDUS2) (Up-regulated in lung cancer) (URLC8) isoform 1 [Equus caballus] Length = 493 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225 D F VV ++ + D SK+ AEQ AA L+ +G+ Sbjct: 396 DRLFCSVVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 436 >gi|146180696|ref|XP_001470932.1| conserved hypothetical protein [Tetrahymena thermophila] gi|146144409|gb|EDK31487.1| conserved hypothetical protein [Tetrahymena thermophila SB210] Length = 1822 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 34/71 (47%) Query: 34 HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 +Y +RLEFLGD +L L+I LFN F ++ GEL+ SLV +T + Sbjct: 1600 KNYNLCNQRLEFLGDAVLDLIIVEYLFNKFPNSDPGELTQMKTSLVQNKTLCLINLMKGF 1659 Query: 94 ASFIRVSSDLR 104 FI S Sbjct: 1660 YKFIIGSIQHN 1670 >gi|115495449|ref|NP_001068887.1| tRNA-dihydrouridine synthase 2-like [Bos taurus] gi|111308646|gb|AAI20343.1| Dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) [Bos taurus] gi|296477934|gb|DAA20049.1| dihydrouridine synthase 2-like, SMM1 homolog [Bos taurus] Length = 493 Score = 40.7 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225 D F VV ++ + D SK+ AEQ AA L+ +G+ Sbjct: 396 DRLFCSVVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 436 >gi|242059029|ref|XP_002458660.1| hypothetical protein SORBIDRAFT_03g037610 [Sorghum bicolor] gi|241930635|gb|EES03780.1| hypothetical protein SORBIDRAFT_03g037610 [Sorghum bicolor] Length = 529 Score = 40.7 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 53/186 (28%), Gaps = 14/186 (7%) Query: 22 LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 LL A H + + + + RL FLG +L L + G + R Sbjct: 160 LLYLAFQHLDPSSERTRTRHVRNGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 219 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 +L+ + + + L + + DL K + V +L A+YL G+ Sbjct: 220 FALIGKKVLPRWLKAASLHNLVFPYDDLDKMIRKDREPPSKAVFWALFGAIYLCFGMPEV 279 Query: 136 GT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDP 187 F R ++ + ++ P H Sbjct: 280 YRVLFEAFGMDPDDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPR 339 Query: 188 RFTVVV 193 F V Sbjct: 340 LFRACV 345 Score = 38.0 bits (86), Expect = 0.91, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 5/87 (5%) Query: 18 ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + YERLE++G +I L+++ L A L+ Sbjct: 386 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDLVMAERLLMKHLDAPGRWLA 445 Query: 73 VRFNSLVSAETCSQVARELDLASFIRV 99 + + + C + R+ L +I Sbjct: 446 EKHRRTLMNKYCGRYLRDKHLQHYIIY 472 >gi|221114051|ref|XP_002158541.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 615 Score = 40.7 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 3/70 (4%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 ++ +L E+ F T + F V V + L G +K+ A Sbjct: 381 PVIKNPLQKLYEYCQLHFKKTIAFNKLDECF---SGLFYVEVLVGFLRYGVGQGDNKKNA 437 Query: 212 EQVAAAEVLK 221 + AA L+ Sbjct: 438 KYAAAQATLE 447 >gi|47227529|emb|CAG04677.1| unnamed protein product [Tetraodon nigroviridis] Length = 349 Score = 40.7 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 14/33 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F I G+ G+ +K+ A AA L+ Sbjct: 46 FAFCALIDGVEHKTGIGKNKKEARLAAAQYALE 78 >gi|241950193|ref|XP_002417819.1| 60S ribosomal protein L15, mitochondrial precursor, putative [Candida dubliniensis CD36] gi|223641157|emb|CAX45534.1| 60S ribosomal protein L15, mitochondrial precursor, putative [Candida dubliniensis CD36] Length = 220 Score = 40.7 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Query: 2 SALRYSTLEKRIG--YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + + ++ +G Y + + + +TH S + + E+L +G ++L L + + Sbjct: 54 NETNINHIKSFLGDKYNIPD-EIALQVITHKSFGNGIKPYNEKLAAMGSKLLSLYFAKYV 112 Query: 60 FNHFDSAKE 68 N + Sbjct: 113 TNQPCKHEN 121 >gi|198477035|ref|XP_002136790.1| GA22530 [Drosophila pseudoobscura pseudoobscura] gi|198145112|gb|EDY71816.1| GA22530 [Drosophila pseudoobscura pseudoobscura] Length = 153 Score = 40.7 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 188 RFTVVVEISGLAPA--QGMDCSKRAAEQVAAAEVLKREGIWT 227 +F +V++S L G + R A++ AA L+ I T Sbjct: 110 QFQCLVQLSTLPVGVCHGTGPTAREAQRHAAQNALEYLKIMT 151 >gi|158340645|ref|YP_001521813.1| hypothetical protein AM1_D0002 [Acaryochloris marina MBIC11017] gi|158310886|gb|ABW32499.1| hypothetical protein AM1_D0002 [Acaryochloris marina MBIC11017] Length = 78 Score = 40.7 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 3/57 (5%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 T ++ + D F E+ G+ K+ A+ +AA E+L++ Sbjct: 6 CQTLRWETPVYTMVSSDEWFICECELSVLGQQLEGSGVAKKKKLAKSIAAREILEQL 62 >gi|302805889|ref|XP_002984695.1| hypothetical protein SELMODRAFT_423789 [Selaginella moellendorffii] gi|300147677|gb|EFJ14340.1| hypothetical protein SELMODRAFT_423789 [Selaginella moellendorffii] Length = 810 Score = 40.3 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 188 RFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 F VE+ +G K+ AEQ AA + L G Sbjct: 41 TFYCKVELPNGAVVVSEPCRRKKDAEQDAARKALHEIG 78 >gi|290976137|ref|XP_002670797.1| predicted protein [Naegleria gruberi] gi|284084360|gb|EFC38053.1| predicted protein [Naegleria gruberi] Length = 656 Score = 40.3 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 16/23 (69%) Query: 7 STLEKRIGYAFANRSLLEKALTH 29 ++E IGY F+N+S L ALTH Sbjct: 336 ESVEDIIGYTFSNKSYLMIALTH 358 >gi|145545985|ref|XP_001458676.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124426497|emb|CAK91279.1| unnamed protein product [Paramecium tetraurelia] Length = 313 Score = 40.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 26/234 (11%) Query: 16 AFANRSLLEKALT---H------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 F N LL +A T H + + E G ++L + Sbjct: 7 EFRNTKLLVQAFTNKIHEIEYFQKTGQQYQYGNNEDFSIAGQQLLEFYFYDYMLLQGFPN 66 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC---SFMTSIQADVVESLI 123 ++ + + + + ++A + + + L + +D V+S+I Sbjct: 67 QQSQFKKPSDIIQLRQRLINDKYLSEIAILLSIQNLLNIGNQKSLKNNPKVLSDCVKSII 126 Query: 124 AALYLDGGIEVAGTFVDKY-------WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 A Y D ++ + K + +++ + K+ E+ ++ G Sbjct: 127 GAHYYDKQNDLEALRDIIHPIVVQLLNKGEQITRTQWKYNPKSSFLEYLNSYKGELNINP 186 Query: 177 VTFRSGP-------DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + + +E++ Q + +KR EQ E L + Sbjct: 187 KLTIEWKKDDSILNQNKSLYLISLELNSTMKVQKVGINKRETEQSVYLEALLQL 240 >gi|321466884|gb|EFX77877.1| hypothetical protein DAPPUDRAFT_321006 [Daphnia pulex] Length = 131 Score = 40.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 5/70 (7%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-----AQGMDCSKRAAE 212 L + + PEY +T SGP H F V +++ ++ + S + A+ Sbjct: 16 PMCLVDELPCHHEIQPEYCLTEESGPVHQKTFVVNLKLGKISFKKQFPIVQVAQSTKKAQ 75 Query: 213 QVAAAEVLKR 222 AA LK+ Sbjct: 76 HAAAVLALKK 85 >gi|317156819|ref|XP_001826034.2| hypothetical protein AOR_1_658054 [Aspergillus oryzae RIB40] Length = 216 Score = 40.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 RF + ++ G+ A G +K+ A +AA V +R + Sbjct: 176 RFRITIQYCGVE-ASGEGRNKKTARHLAARRVCERLNL 212 >gi|297699341|ref|XP_002826745.1| PREDICTED: adenosine deaminase domain-containing protein 2-like isoform 2 [Pongo abelii] Length = 662 Score = 40.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V E+ G+ G SK A+Q AA L Sbjct: 214 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 245 >gi|297699339|ref|XP_002826744.1| PREDICTED: adenosine deaminase domain-containing protein 2-like isoform 1 [Pongo abelii] Length = 580 Score = 40.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V E+ G+ G SK A+Q AA L Sbjct: 142 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 173 >gi|223972688|ref|NP_631913.3| adenosine deaminase domain-containing protein 2 isoform 1 [Homo sapiens] Length = 665 Score = 40.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V E+ G+ G SK A+Q AA L Sbjct: 217 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 248 >gi|238492893|ref|XP_002377683.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] gi|220696177|gb|EED52519.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] Length = 247 Score = 40.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 RF + ++ G+ A G +K+ A +AA V +R + Sbjct: 207 RFRITIQYCGVE-ASGEGRNKKTARHLAARRVCERLNL 243 >gi|160380524|sp|Q95JV3|ADAD2_MACFA RecName: Full=Adenosine deaminase domain-containing protein 2 Length = 580 Score = 40.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V E+ G+ G SK A+Q AA L Sbjct: 142 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 173 >gi|119615897|gb|EAW95491.1| testis nuclear RNA-binding protein-like, isoform CRA_a [Homo sapiens] gi|189054790|dbj|BAG37613.1| unnamed protein product [Homo sapiens] Length = 583 Score = 40.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V E+ G+ G SK A+Q AA L Sbjct: 145 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 176 >gi|109129347|ref|XP_001112377.1| PREDICTED: adenosine deaminase domain-containing protein 2-like isoform 1 [Macaca mulatta] Length = 562 Score = 40.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V E+ G+ G SK A+Q AA L Sbjct: 124 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 155 >gi|109129345|ref|XP_001112441.1| PREDICTED: adenosine deaminase domain-containing protein 2-like isoform 2 [Macaca mulatta] gi|15207991|dbj|BAB63020.1| hypothetical protein [Macaca fascicularis] Length = 580 Score = 40.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V E+ G+ G SK A+Q AA L Sbjct: 142 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 173 >gi|223972690|ref|NP_001138872.1| adenosine deaminase domain-containing protein 2 isoform 2 [Homo sapiens] gi|74730183|sp|Q8NCV1|ADAD2_HUMAN RecName: Full=Adenosine deaminase domain-containing protein 2; AltName: Full=Testis nuclear RNA-binding protein-like gi|20513942|gb|AAM22869.1|AF447586_1 unknown [Homo sapiens] gi|23273980|gb|AAH33491.1| ADAD2 protein [Homo sapiens] gi|325463397|gb|ADZ15469.1| adenosine deaminase domain containing 2 [synthetic construct] Length = 583 Score = 40.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V E+ G+ G SK A+Q AA L Sbjct: 145 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 176 >gi|83774778|dbj|BAE64901.1| unnamed protein product [Aspergillus oryzae] Length = 250 Score = 40.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 RF + ++ G+ A G +K+ A +AA V +R + Sbjct: 207 RFRITIQYCGVE-ASGEGRNKKTARHLAARRVCERLNL 243 >gi|34526549|dbj|BAC85152.1| FLJ00337 protein [Homo sapiens] Length = 288 Score = 40.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V E+ G+ G SK A+Q AA L Sbjct: 82 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 113 >gi|21751785|dbj|BAC04032.1| unnamed protein product [Homo sapiens] gi|119615898|gb|EAW95492.1| testis nuclear RNA-binding protein-like, isoform CRA_b [Homo sapiens] Length = 665 Score = 40.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F+V E+ G+ G SK A+Q AA L Sbjct: 217 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 248 >gi|161579133|gb|ABX72054.1| R2D2 protein [Tribolium castaneum] Length = 141 Score = 40.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 7/21 (33%), Positives = 14/21 (66%) Query: 203 GMDCSKRAAEQVAAAEVLKRE 223 +K+ A+Q+AA E+L++ Sbjct: 1 ATANTKKQAKQLAAREMLEKI 21 >gi|50550997|ref|XP_502972.1| YALI0D18150p [Yarrowia lipolytica] gi|49648840|emb|CAG81164.1| YALI0D18150p [Yarrowia lipolytica] Length = 397 Score = 40.3 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 1/69 (1%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 E+ + PE ++ +G P F V V +G S A+ Sbjct: 299 FNQPHKEIVRVCAREGLERPEARLMAETGRLSKAPVFVVGVFSGKHKLGEGQGASLAEAK 358 Query: 213 QVAAAEVLK 221 A+ LK Sbjct: 359 IRASVNALK 367 >gi|293335075|ref|NP_001167848.1| hypothetical protein LOC100381550 [Zea mays] gi|223944409|gb|ACN26288.1| unknown [Zea mays] Length = 264 Score = 40.3 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 4/73 (5%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAA 211 D EL+E + T +G H V V I+G + + + + A Sbjct: 1 MHIDPMRELRETCQYNGFDLGLPEPTKYNGEFHVK---VEVNINGKMISCTAANRNSKDA 57 Query: 212 EQVAAAEVLKREG 224 +VAA E L + Sbjct: 58 RKVAAQETLSKLK 70 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 18/91 (19%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 R+ A++ L E A + PE+++ GP H +FT V I G S Sbjct: 169 YHGDMVRKTARSFLYELCAANYWKPPEFELCNDEGPSHLRKFTCKVLIE----ITGTSVS 224 Query: 208 -----------KRAAEQVAAAEV---LKREG 224 KRAA++ AA LK G Sbjct: 225 LLECYSDPKLQKRAAQEHAAEGALWYLKHLG 255 >gi|169598446|ref|XP_001792646.1| hypothetical protein SNOG_02027 [Phaeosphaeria nodorum SN15] gi|111069119|gb|EAT90239.1| hypothetical protein SNOG_02027 [Phaeosphaeria nodorum SN15] Length = 145 Score = 40.3 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLL 59 + +++ + Y F + +LL++A S S ++ +RL +GD +L L + Sbjct: 4 FKSIQDCVDYHFHDSTLLKEAFLASGAPISNKDIEGPVKGNKRLALVGDAVLRLAVLDEW 63 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 F E R + + E ++VA +L ++ + + + Sbjct: 64 F--ESGTSTAEGHGRVVEVGTNERLAKVAENWNLKKYMIENPCQQGEAPRE 112 >gi|241954798|ref|XP_002420120.1| RNase III, putative; ribonuclease III, putative [Candida dubliniensis CD36] gi|223643461|emb|CAX42340.1| RNase III, putative [Candida dubliniensis CD36] Length = 666 Score = 40.3 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 18/35 (51%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + V+V + G+ G D +K+ A Q AA L Sbjct: 621 EKVYHVLVSVKGIYLGGGFDLNKKLAAQKAAMCAL 655 >gi|221122562|ref|XP_002164293.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Hydra magnipapillata] Length = 1280 Score = 40.3 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219 + + G + F + PD RF +I G+ A G SK+ E AA ++ Sbjct: 5 AKGFLFHWVGKQMKLIPHFYAVPDGPHRFNYQAKIDGINYIAFGGGPSKKEGEAAAARDL 64 Query: 220 LKRE 223 L Sbjct: 65 LNYL 68 >gi|242025160|ref|XP_002432994.1| ATP-dependent RNA helicase A, putative [Pediculus humanus corporis] gi|212518503|gb|EEB20256.1| ATP-dependent RNA helicase A, putative [Pediculus humanus corporis] Length = 1249 Score = 40.3 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 1/53 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 +G + RF +++ G + G +K+ A+ AA + Sbjct: 11 CIKSGRTPTFDVRAAGLKNRQRFICELKVDGYSYIGCGNSTNKKDAQFNAARD 63 >gi|313224856|emb|CBY20648.1| unnamed protein product [Oikopleura dioica] Length = 808 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 17/38 (44%) Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 D+ F + + + +G +K+ A+ A A L+ Sbjct: 239 DNTGLFVIQLGFTDGVMFEGYGRNKKLAKHHACAVALE 276 >gi|147832855|emb|CAN72816.1| hypothetical protein VITISV_004100 [Vitis vinifera] Length = 894 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 8/29 (27%), Positives = 12/29 (41%) Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V G +G ++R A+ AA L Sbjct: 683 EVWNQGEKIGEGTGKTRREAQCQAAEASL 711 Score = 39.5 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 13/30 (43%) Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 VEI G +G + A+ AA + L Sbjct: 812 AQVEIDGQVLGKGTGSTWDDAKMQAAEKAL 841 >gi|327290459|ref|XP_003229940.1| PREDICTED: NF-kappa-B-repressing factor-like [Anolis carolinensis] Length = 719 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + AQG +K+ ++ AA E LK Sbjct: 396 NRLWRCGVYLEDHFLAQGFG-TKKTSKHAAADEALKIL 432 >gi|313222343|emb|CBY39288.1| unnamed protein product [Oikopleura dioica] Length = 826 Score = 40.3 bits (92), Expect = 0.22, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 17/38 (44%) Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 D+ F + + + +G +K+ A+ A A L+ Sbjct: 255 DNTGLFVIQLGFTDGVMFEGYGRNKKLAKHHACAVALE 292 >gi|195166832|ref|XP_002024238.1| GL14922 [Drosophila persimilis] gi|198468810|ref|XP_002134128.1| GA26573 [Drosophila pseudoobscura pseudoobscura] gi|194107611|gb|EDW29654.1| GL14922 [Drosophila persimilis] gi|198146581|gb|EDY72755.1| GA26573 [Drosophila pseudoobscura pseudoobscura] Length = 463 Score = 40.3 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 24/192 (12%), Positives = 44/192 (22%), Gaps = 7/192 (3%) Query: 34 HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93 E Y RL D + + + RF + + ++ D Sbjct: 263 DELIERYLRLCVDYDNAPHNAKYCVQNMLKELQETP-RGKRFLQCQTLQQICEIWHLGDY 321 Query: 94 ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153 + + + + + + Sbjct: 322 CRRKQKELRTLGNSGRAEVEPPEAQAKRQKLEEAATAITDEYEGVICRSMPFLRSTYASD 381 Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAE 212 KT L +A P Y+ D F + + + +K+ AE Sbjct: 382 NHLPKTVLYVYAGKMGKSPPAYETQQC-----DKLFRAICSYDDQRYSSTFWEKNKKQAE 436 Query: 213 QVAAAEVLKREG 224 Q AA L G Sbjct: 437 QGAALVALLHIG 448 >gi|227206366|dbj|BAH57238.1| AT1G09700 [Arabidopsis thaliana] Length = 403 Score = 40.3 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 26/76 (34%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 Q + K LQE+A P Y+ +FT VEI G+ Sbjct: 74 QCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAA 133 Query: 205 DCSKRAAEQVAAAEVL 220 +K+ AE A L Sbjct: 134 TRTKKDAEISAGRTAL 149 >gi|330797669|ref|XP_003286881.1| hypothetical protein DICPUDRAFT_150900 [Dictyostelium purpureum] gi|325083116|gb|EGC36577.1| hypothetical protein DICPUDRAFT_150900 [Dictyostelium purpureum] Length = 790 Score = 40.3 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 17/38 (44%) Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212 + + G DH+P F + I+ + +K+ A+ Sbjct: 733 WDIPQIGGSDHNPEFKCSLYINDKYIHSTIAETKKKAK 770 >gi|332244469|ref|XP_003271396.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform 3 [Nomascus leucogenys] Length = 565 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161 Query: 223 E 223 Sbjct: 162 L 162 >gi|332244467|ref|XP_003271395.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform 2 [Nomascus leucogenys] Length = 558 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 84 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 143 Query: 223 E 223 Sbjct: 144 L 144 >gi|332244465|ref|XP_003271394.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform 1 [Nomascus leucogenys] Length = 576 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161 Query: 223 E 223 Sbjct: 162 L 162 >gi|307776249|pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1 Length = 77 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 24/71 (33%) Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 K LQE+A P Y+ +FT VEI G+ +K+ Sbjct: 2 HMHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKK 61 Query: 210 AAEQVAAAEVL 220 AE A L Sbjct: 62 DAEISAGRTAL 72 >gi|297293318|ref|XP_001103214.2| PREDICTED: adenosine deaminase domain-containing protein 1 isoform 4 [Macaca mulatta] Length = 613 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 139 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 198 Query: 223 E 223 Sbjct: 199 L 199 >gi|296195646|ref|XP_002745514.1| PREDICTED: adenosine deaminase domain-containing protein 1-like [Callithrix jacchus] Length = 509 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 101 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 160 Query: 223 E 223 Sbjct: 161 L 161 >gi|291401839|ref|XP_002717282.1| PREDICTED: adenosine deaminase domain containing 1 (testis-specific) [Oryctolagus cuniculus] Length = 565 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161 Query: 223 E 223 Sbjct: 162 L 162 >gi|148703150|gb|EDL35097.1| testis nuclear RNA binding protein [Mus musculus] Length = 556 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 144 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 203 Query: 223 E 223 Sbjct: 204 L 204 >gi|126330710|ref|XP_001370522.1| PREDICTED: similar to testis nuclear RNA binding protein [Monodelphis domestica] Length = 660 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 185 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 244 Query: 223 E 223 Sbjct: 245 L 245 >gi|123263539|emb|CAM28065.1| adenosine deaminase domain containing 1 (testis specific) [Mus musculus] Length = 218 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 144 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 203 Query: 223 E 223 Sbjct: 204 L 204 >gi|123263540|emb|CAM28066.1| adenosine deaminase domain containing 1 (testis specific) [Mus musculus] Length = 178 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 104 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 163 Query: 223 E 223 Sbjct: 164 L 164 >gi|226530771|ref|NP_001152767.1| adenosine deaminase domain-containing protein 1 isoform 3 [Homo sapiens] gi|119625634|gb|EAX05229.1| testis nuclear RNA-binding protein, isoform CRA_b [Homo sapiens] Length = 558 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 84 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 143 Query: 223 E 223 Sbjct: 144 L 144 >gi|115528969|gb|AAI07347.1| Adad1 protein [Mus musculus] Length = 222 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 144 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 203 Query: 223 E 223 Sbjct: 204 L 204 >gi|114595929|ref|XP_001155017.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform 2 [Pan troglodytes] Length = 558 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 84 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 143 Query: 223 E 223 Sbjct: 144 L 144 >gi|114595923|ref|XP_001155068.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform 3 [Pan troglodytes] Length = 576 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161 Query: 223 E 223 Sbjct: 162 L 162 >gi|114595925|ref|XP_001154908.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform 1 [Pan troglodytes] gi|114595927|ref|XP_517424.2| PREDICTED: testis nuclear RNA-binding protein isoform 4 [Pan troglodytes] Length = 565 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161 Query: 223 E 223 Sbjct: 162 L 162 >gi|109075564|ref|XP_001103054.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform 2 [Macaca mulatta] Length = 565 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161 Query: 223 E 223 Sbjct: 162 L 162 >gi|109075566|ref|XP_001102972.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform 1 [Macaca mulatta] Length = 558 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 84 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 143 Query: 223 E 223 Sbjct: 144 L 144 >gi|16041086|dbj|BAB69710.1| hypothetical protein [Macaca fascicularis] Length = 345 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 15 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 74 Query: 223 E 223 Sbjct: 75 L 75 >gi|21752129|dbj|BAC04125.1| unnamed protein product [Homo sapiens] Length = 558 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 84 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 143 Query: 223 E 223 Sbjct: 144 L 144 >gi|153945870|ref|NP_033376.2| adenosine deaminase domain-containing protein 1 [Mus musculus] gi|81871891|sp|Q5SUE7|ADAD1_MOUSE RecName: Full=Adenosine deaminase domain-containing protein 1; AltName: Full=Testis nuclear RNA-binding protein gi|56238160|emb|CAI26206.1| adenosine deaminase domain containing 1 (testis specific) [Mus musculus] gi|123272971|emb|CAM18412.1| adenosine deaminase domain containing 1 (testis specific) [Mus musculus] gi|183396967|gb|AAI65984.1| Adenosine deaminase domain containing 1 (testis specific) [synthetic construct] Length = 619 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 144 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 203 Query: 223 E 223 Sbjct: 204 L 204 >gi|673456|emb|CAA59168.1| testis nuclear RNA binding protein [Mus musculus] Length = 619 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 144 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 203 Query: 223 E 223 Sbjct: 204 L 204 >gi|226529650|ref|NP_001152757.1| adenosine deaminase domain-containing protein 1 isoform 2 [Homo sapiens] gi|25955608|gb|AAH40229.1| ADAD1 protein [Homo sapiens] gi|119625639|gb|EAX05234.1| testis nuclear RNA-binding protein, isoform CRA_d [Homo sapiens] gi|123993053|gb|ABM84128.1| testis nuclear RNA-binding protein [synthetic construct] gi|123993055|gb|ABM84129.1| testis nuclear RNA-binding protein [synthetic construct] gi|124000041|gb|ABM87529.1| testis nuclear RNA-binding protein [synthetic construct] gi|124000043|gb|ABM87530.1| testis nuclear RNA-binding protein [synthetic construct] Length = 565 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161 Query: 223 E 223 Sbjct: 162 L 162 >gi|297484624|ref|XP_002694442.1| PREDICTED: adenosine deaminase domain containing 1 (testis-specific) isoform 2 [Bos taurus] gi|296478716|gb|DAA20831.1| adenosine deaminase domain containing 1 (testis-specific) isoform 2 [Bos taurus] Length = 566 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161 Query: 223 E 223 Sbjct: 162 L 162 >gi|297484622|ref|XP_002694441.1| PREDICTED: adenosine deaminase domain containing 1 (testis-specific) isoform 1 [Bos taurus] gi|296478715|gb|DAA20830.1| adenosine deaminase domain containing 1 (testis-specific) isoform 1 [Bos taurus] Length = 577 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161 Query: 223 E 223 Sbjct: 162 L 162 >gi|74354638|gb|AAI02559.1| Adenosine deaminase domain containing 1 (testis-specific) [Bos taurus] Length = 208 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161 Query: 223 E 223 Sbjct: 162 L 162 >gi|62244087|ref|NP_001006978.2| adenosine deaminase domain-containing protein 1 [Rattus norvegicus] gi|123780593|sp|Q3KR54|ADAD1_RAT RecName: Full=Adenosine deaminase domain-containing protein 1; AltName: Full=Testis nuclear RNA-binding protein gi|76780258|gb|AAI05907.1| Adenosine deaminase domain containing 1 (testis specific) [Rattus norvegicus] Length = 619 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 144 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 203 Query: 223 E 223 Sbjct: 204 L 204 >gi|21245124|ref|NP_640336.1| adenosine deaminase domain-containing protein 1 isoform 1 [Homo sapiens] gi|74732329|sp|Q96M93|ADAD1_HUMAN RecName: Full=Adenosine deaminase domain-containing protein 1; AltName: Full=Testis nuclear RNA-binding protein gi|16552939|dbj|BAB71416.1| unnamed protein product [Homo sapiens] gi|119625633|gb|EAX05228.1| testis nuclear RNA-binding protein, isoform CRA_a [Homo sapiens] gi|119625635|gb|EAX05230.1| testis nuclear RNA-binding protein, isoform CRA_a [Homo sapiens] gi|119625636|gb|EAX05231.1| testis nuclear RNA-binding protein, isoform CRA_a [Homo sapiens] gi|119625637|gb|EAX05232.1| testis nuclear RNA-binding protein, isoform CRA_a [Homo sapiens] Length = 576 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161 Query: 223 E 223 Sbjct: 162 L 162 >gi|118398179|ref|XP_001031419.1| Double-stranded RNA binding motif family protein [Tetrahymena thermophila] gi|89285747|gb|EAR83756.1| Double-stranded RNA binding motif family protein [Tetrahymena thermophila SB210] Length = 967 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 28/95 (29%) Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188 + EV T + + K +D+ + + + V Sbjct: 305 NMSNEVLITRKIVKILEEFKEVQKRDQDSIFHIALKQYCEKFHKNYDCVFTEEKDSKLKG 364 Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + G+ + SK+ A+ A + R Sbjct: 365 FICEVIVDGIRLGPQLAKSKKDAKTQACMCAMARI 399 >gi|114599995|ref|XP_001146638.1| PREDICTED: similar to endoribonuclease Dicer [Pan troglodytes] Length = 84 Score = 39.9 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 17/35 (48%) Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 V +E++G +G+ S R A+ AA L+ Sbjct: 41 RVTMEVAGQEKFKGVGRSNRIAKSAAARRALRSLK 75 >gi|224061609|ref|XP_002300565.1| hypothetical protein POPTRDRAFT_177484 [Populus trichocarpa] gi|222847823|gb|EEE85370.1| hypothetical protein POPTRDRAFT_177484 [Populus trichocarpa] Length = 926 Score = 39.9 bits (91), Expect = 0.25, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 3/78 (3%) Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 +A+ KF A +++E + GP F +E+ + Sbjct: 2 PKAIIHQKFGNKACYKVEEVKEESAQNGCPGLAIPQKGPF---LFRCRLELPEFTVVSDI 58 Query: 205 DCSKRAAEQVAAAEVLKR 222 K+ AEQ AA LK+ Sbjct: 59 CRKKKDAEQSAADLALKK 76 >gi|58264878|ref|XP_569595.1| hypothetical protein CNC03680 [Cryptococcus neoformans var. neoformans JEC21] gi|57225827|gb|AAW42288.1| hypothetical protein CNC03680 [Cryptococcus neoformans var. neoformans JEC21] Length = 839 Score = 39.9 bits (91), Expect = 0.25, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 9/102 (8%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF- 60 + + + L +A+T + + + +YERLE LGD +L + + + Sbjct: 487 EEMSAKEFNSIL-----DPELALQAITAAEGLNVPRWTYERLEILGDTLLKFMTTLHFYL 541 Query: 61 ---NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 ++ + L+S T + A + L ++R Sbjct: 542 LGGGADSEDDMNKVWQDRHMLISNRTLTANAVKQGLVKYVRN 583 >gi|134109495|ref|XP_776862.1| hypothetical protein CNBC3530 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259542|gb|EAL22215.1| hypothetical protein CNBC3530 [Cryptococcus neoformans var. neoformans B-3501A] Length = 839 Score = 39.9 bits (91), Expect = 0.25, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 9/102 (8%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF- 60 + + + L +A+T + + + +YERLE LGD +L + + + Sbjct: 487 EEMSAKEFNSIL-----DPELALQAITAAEGLNVPRWTYERLEILGDTLLKFMTTLHFYL 541 Query: 61 ---NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 ++ + L+S T + A + L ++R Sbjct: 542 LGGGADSEDDMNKVWQDRHMLISNRTLTANAVKQGLVKYVRN 583 >gi|224613148|dbj|BAH24251.1| dsRNA-specific ribonuclease RNaseIII [Tsuwabuki witches'-broom phytoplasma] Length = 159 Score = 39.9 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 44/137 (32%), Gaps = 3/137 (2%) Query: 71 LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130 ++ + V ++ A E+ L +I + +K SI AD E+L A+YLD Sbjct: 1 MTKKRAQAVCVDSLLIYAEEIQLKKYIYLGKGEKKRSVHN-YSIVADAFEALFGAIYLDL 59 Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190 G E A K + YK+ G H+ F Sbjct: 60 GFEQAQKTFYHVVLPCLNKIINIIDFKTQ--LQELVQTRKQNITYKIISEKGLAHEKEFV 117 Query: 191 VVVEISGLAPAQGMDCS 207 V + +G + Sbjct: 118 SEVYLGKEWLGKGNGKT 134 >gi|145506903|ref|XP_001439412.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|74830350|emb|CAI39053.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia] gi|124406596|emb|CAK72015.1| unnamed protein product [Paramecium tetraurelia] Length = 632 Score = 39.9 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 7/97 (7%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 ++E + Y ++E+A+ SS +++ +YE LE LGD +L +++ +F ++ Sbjct: 333 DSVESILNYQ-----VVEEAIVTSS--SNFKRNYENLELLGDSVLKYVVTVDIFRQYELL 385 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 EGE++ + L+ +Q+ +L L +I Sbjct: 386 DEGEMTSLRSRLIMNTFLAQLFEQLGLQHYIINQDLH 422 Score = 37.2 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 8/47 (17%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 Y F N L E A+ Y+RLEFLGD + LL+ + +F Sbjct: 503 DYKFNNPQLFEIAI--------NPLQYDRLEFLGDAAIELLVISYIF 541 >gi|145517933|ref|XP_001444844.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|74830355|emb|CAI39054.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia] gi|124412277|emb|CAK77447.1| unnamed protein product [Paramecium tetraurelia] Length = 632 Score = 39.9 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 7/103 (6%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 ++E + Y E+A+ SS + ++ +YE LE LGD +L +I+ +F + Sbjct: 333 DSVESILNYQVP-----EEAIVTSSFN--FKRNYENLEVLGDSVLKYVITADIFKQYKLL 385 Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 EGE++ + L+ +Q+ +L L FI K + + Sbjct: 386 DEGEMTSLRSRLIMNTFLAQLFEQLGLEQFIINQDLHFKQIKN 428 Score = 38.8 bits (88), Expect = 0.68, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 8/47 (17%) Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 Y F N L E A+ + Y+RLEFLGD + LL+ + F Sbjct: 503 DYKFNNPQLYEIAI--------NPQYYDRLEFLGDAAIELLVISYAF 541 >gi|212722406|ref|NP_001131481.1| hypothetical protein LOC100192817 [Zea mays] gi|194691644|gb|ACF79906.1| unknown [Zea mays] gi|195623306|gb|ACG33483.1| double-stranded RNA binding motif family protein [Zea mays] Length = 184 Score = 39.9 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 7/52 (13%) Query: 176 KVTFRSGPDHDPRFTVVVEI--SGLAPAQGMDCS-----KRAAEQVAAAEVL 220 GP H+ FT V + GL S K+AA + AA L Sbjct: 108 FDFEEQGPPHNRIFTCKVTVHLDGLVNTIMECFSDPKPKKKAARENAAQGAL 159 >gi|296863416|pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular Implications Processing Length = 76 Score = 39.9 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 24/67 (35%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 K LQE+A P Y+ +FT VEI G+ +K+ AE Sbjct: 3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEI 62 Query: 214 VAAAEVL 220 A L Sbjct: 63 SAGRTAL 69 >gi|183985546|gb|AAI66047.1| LOC100158445 protein [Xenopus laevis] Length = 796 Score = 39.9 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223 + V + G A+G +K+ ++ AA E LK Sbjct: 488 VWKCGVFVQGHCVAEGYG-NKKTSKHAAAKEAVRILKNL 525 >gi|299750448|ref|XP_001836762.2| hypothetical protein CC1G_04075 [Coprinopsis cinerea okayama7#130] gi|298408908|gb|EAU84979.2| hypothetical protein CC1G_04075 [Coprinopsis cinerea okayama7#130] Length = 118 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 10/80 (12%), Positives = 23/80 (28%), Gaps = 5/80 (6%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SG--LAPAQGMDC 206 +K++ + + F V + G +G Sbjct: 29 TMTVLSKSDACMHYNNACEKLFGKTFPPTVHEINKSEFKAEVRVTFEDGVIKLLGEGAGT 88 Query: 207 SKRAAEQVAAAEVLKREGIW 226 SK+ A+ +A +E + + Sbjct: 89 SKQIAKNLACSEAYNQLRVI 108 >gi|301774350|ref|XP_002922598.1| PREDICTED: NF-kappa-B-repressing factor-like [Ailuropoda melanoleuca] Length = 824 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 507 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 543 >gi|269114857|ref|YP_003302620.1| hypothetical protein MHO_0830 [Mycoplasma hominis] gi|268322482|emb|CAX37217.1| Hypothetical protein, putative Ribonuclease III [Mycoplasma hominis ATCC 23114] Length = 219 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 70/184 (38%), Gaps = 23/184 (12%) Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119 + + E + + N +VS +T ++ +L A ++ + + +++ + S++AD+ Sbjct: 24 YCLIANKNESDFTDLKNQIVSNKTLAKKINKLGFAKYLVLGDNDKRNNVANQDSVKADLF 83 Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177 E++I A+ +D G ++ K R+ + + + +A + + Sbjct: 84 EAIIGAIAIDSGWDIKRLKNIIIKMLDIEHFFKDVDCREKRPDKFKLENAINTLKELAER 143 Query: 178 TFRSGP------------DHDPRFTVVVEIS---------GLAPAQGMDCSKRAAEQVAA 216 S P + + ++ +G SK+ A+++AA Sbjct: 144 GECSMPIYQISEKPIIDNNGKQWWHCRCNVNFRNLQWMGLWTKYTEGYGTSKKLAKKMAA 203 Query: 217 AEVL 220 VL Sbjct: 204 YIVL 207 >gi|119183947|ref|XP_001242948.1| hypothetical protein CIMG_06844 [Coccidioides immitis RS] Length = 238 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 1/100 (1%) Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 L+ + +Q + +L + + P ++ +G Sbjct: 103 AIYLHCGRPVAKQFFKEHFMSRQLPVADLFSFAQPTRDLTKLCAREGFERPVARIISETG 162 Query: 183 P-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P F V + +G S A AA LK Sbjct: 163 RLSRHPVFVVGIFSGQDLLGEGSGPSLTEARFRAAVAALK 202 >gi|327274104|ref|XP_003221818.1| PREDICTED: adenosine deaminase domain-containing protein 1-like [Anolis carolinensis] Length = 576 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 14/35 (40%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F + G+ G+ +K+ ++ AA L Sbjct: 122 FAFCAVVDGITYKTGLGQNKKESKSNAAKLALDEL 156 >gi|281340897|gb|EFB16481.1| hypothetical protein PANDA_011578 [Ailuropoda melanoleuca] Length = 690 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 409 >gi|198429691|ref|XP_002127325.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8 [Ciona intestinalis] Length = 577 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 8/68 (11%), Positives = 21/68 (30%), Gaps = 1/68 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215 + T + + + DP F + ++ +K++A+ A Sbjct: 293 KPMICILHEYAQSVLRTKPHYIFATNEDASDP-FQATIVLNEKNYGTASGINKKSAKNKA 351 Query: 216 AAEVLKRE 223 A ++ Sbjct: 352 ALLTMEML 359 >gi|109132065|ref|XP_001082426.1| PREDICTED: NF-kappa-B-repressing factor isoform 2 [Macaca mulatta] Length = 690 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 409 >gi|297710881|ref|XP_002832086.1| PREDICTED: NF-kappa-B-repressing factor-like isoform 2 [Pongo abelii] Length = 705 Score = 39.9 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 388 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 424 >gi|291084505|ref|NP_001166958.1| NF-kappa-B-repressing factor isoform 1 [Homo sapiens] gi|332861530|ref|XP_001135674.2| PREDICTED: NF-kappa-B-repressing factor isoform 1 [Pan troglodytes] gi|119610265|gb|EAW89859.1| NF-kappaB repressing factor, isoform CRA_a [Homo sapiens] Length = 705 Score = 39.9 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 388 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 424 >gi|332226246|ref|XP_003262300.1| PREDICTED: NF-kappa-B-repressing factor isoform 1 [Nomascus leucogenys] Length = 705 Score = 39.9 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 388 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 424 >gi|121511852|gb|ABM55377.1| NF-kappaB repressing factor [Homo sapiens] Length = 599 Score = 39.9 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 282 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 318 >gi|156368791|ref|XP_001627875.1| predicted protein [Nematostella vectensis] gi|156214837|gb|EDO35812.1| predicted protein [Nematostella vectensis] Length = 803 Score = 39.9 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 12/99 (12%), Positives = 24/99 (24%), Gaps = 5/99 (5%) Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 A ++ + + P GPDH+ F Sbjct: 2 NNTIYFCLTSQAEDIDLDAHLHGNWTLANSKSRLHQFLQQNRLPAEFKYGAVGPDHNRAF 61 Query: 190 TVV--VEISG---LAPAQGMDCSKRAAEQVAAAEVLKRE 223 V + +K+ A Q A ++++ Sbjct: 62 KCELSVFVKSHRRNIHGTANASTKKQAAQSCALSLVRQL 100 >gi|124431167|gb|ABN11234.1| NF-kappaB repressing factor [Homo sapiens] Length = 690 Score = 39.9 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 409 >gi|291407867|ref|XP_002720262.1| PREDICTED: transcription factor NRF [Oryctolagus cuniculus] Length = 705 Score = 39.9 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 388 NRTWRCQVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 424 >gi|71019739|ref|XP_760100.1| hypothetical protein UM03953.1 [Ustilago maydis 521] gi|46099865|gb|EAK85098.1| hypothetical protein UM03953.1 [Ustilago maydis 521] Length = 281 Score = 39.5 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 16/30 (53%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLG 47 +N L +A+TH S ++ + R FLG Sbjct: 112 SNPDLALRAVTHESYLNAREGHNRRFAFLG 141 >gi|332226248|ref|XP_003262301.1| PREDICTED: NF-kappa-B-repressing factor isoform 2 [Nomascus leucogenys] Length = 690 Score = 39.5 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 409 >gi|63003897|ref|NP_060014.2| NF-kappa-B-repressing factor isoform 2 [Homo sapiens] gi|291084508|ref|NP_001166959.1| NF-kappa-B-repressing factor isoform 2 [Homo sapiens] gi|114689983|ref|XP_001135754.1| PREDICTED: transcription factor NRF isoform 2 [Pan troglodytes] gi|33860178|sp|O15226|NKRF_HUMAN RecName: Full=NF-kappa-B-repressing factor; Short=NFkB-repressing factor; AltName: Full=Protein ITBA4; AltName: Full=Transcription factor NRF gi|37784392|gb|AAP43025.1| transcription factor NRF [Homo sapiens] gi|49119071|gb|AAH47878.1| NFKB repressing factor [Homo sapiens] gi|66840154|gb|AAH40379.1| NFKB repressing factor [Homo sapiens] gi|119610266|gb|EAW89860.1| NF-kappaB repressing factor, isoform CRA_b [Homo sapiens] gi|124431169|gb|ABN11235.1| NF-kappaB repressing factor [Homo sapiens] gi|208965280|dbj|BAG72654.1| NF-kappaB repressing factor [synthetic construct] Length = 690 Score = 39.5 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 409 >gi|297710879|ref|XP_002832085.1| PREDICTED: NF-kappa-B-repressing factor-like isoform 1 [Pongo abelii] Length = 690 Score = 39.5 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 409 >gi|328714433|ref|XP_003245358.1| PREDICTED: hypothetical protein LOC100570158 [Acyrthosiphon pisum] Length = 540 Score = 39.5 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 22/225 (9%), Positives = 58/225 (25%), Gaps = 16/225 (7%) Query: 2 SALRYSTLEKRIGYAFAN-RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +++ ++ ++ N +L++ + + E+ D + Sbjct: 185 NSMNSLKIKSNHNVSYNNHIGMLQE------YCQARGLDLPKYEYHQDNDIKNKRYMYSV 238 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 + + + ++D + Sbjct: 239 ICSIGKCKCTGVGISKQIAKNHAARLMYIQIDSNNATINEHSTSNTRKKKPI-------- 290 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 + + K + LQE A+ P+Y+ Sbjct: 291 -DFGLGLSKNEAKNNTVNIALDQIYHGKNKTKMSANYIGTLQEKCAARGWELPKYEYHQE 349 Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225 + + F V+ +G + G+ SK+ A+ AA V + + Sbjct: 350 NDNEIHKLFYSVICSAGPYKSTGVGNSKQLAKNQAAQIVCDQINL 394 >gi|290760511|gb|ADD59808.1| dsRNA-specific ribonuclease RNase III [Periwinkle leaf yellowing phytoplasma] Length = 112 Score = 39.5 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 13/37 (35%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 T +YK+ GP H F V + G + Sbjct: 42 KTIQYKIVQEQGPAHSKNFVAEVYLEKNLLGTGEGST 78 >gi|170029002|ref|XP_001842383.1| ribonuclease iii [Culex quinquefasciatus] gi|167879433|gb|EDS42816.1| ribonuclease iii [Culex quinquefasciatus] Length = 192 Score = 39.5 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 15/44 (34%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + P + + G A S + AE AA + L+ Sbjct: 90 IECNSPTSTRVYMMADYFRGKRLACSNGHSTQQAEMNAAKQALE 133 >gi|321254347|ref|XP_003193044.1| hypothetical protein CGB_C7350C [Cryptococcus gattii WM276] gi|317459513|gb|ADV21257.1| hypothetical protein CNC05030 [Cryptococcus gattii WM276] Length = 409 Score = 39.5 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 186 DPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P F + + + G+ A+G SK A+ AA L+ Sbjct: 302 APLFLIGLFLPSGIKLAEGHGSSKAMAQHRAAVNALQSI 340 >gi|46250431|gb|AAH68514.1| NFKB repressing factor [Homo sapiens] Length = 690 Score = 39.5 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 409 >gi|58265282|ref|XP_569797.1| hypothetical protein CNC05030 [Cryptococcus neoformans var. neoformans JEC21] gi|134109217|ref|XP_776723.1| hypothetical protein CNBC2140 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259403|gb|EAL22076.1| hypothetical protein CNBC2140 [Cryptococcus neoformans var. neoformans B-3501A] gi|57226029|gb|AAW42490.1| hypothetical protein CNC05030 [Cryptococcus neoformans var. neoformans JEC21] Length = 422 Score = 39.5 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 186 DPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P F + + + G+ A+G SK A+ AA L+ Sbjct: 315 APLFLIGLFLPSGIKLAEGHGSSKAMAQHRAAVNALQSI 353 >gi|149060014|gb|EDM10830.1| rCG53269, isoform CRA_b [Rattus norvegicus] Length = 634 Score = 39.5 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 391 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 427 >gi|27820005|gb|AAL39540.2| LD10028p [Drosophila melanogaster] Length = 334 Score = 39.5 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 75/234 (32%), Gaps = 19/234 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRI 50 KR+G +F S L++A T S + ++ L G +I Sbjct: 80 LFAFGKRLGESFE-LSELQRAFTEKSFAEREEDRRRQLGIEESDLQMPHNSDLVEKGQQI 138 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + L + L + L+S ET + V+ L I+ + Sbjct: 139 ARAYVEAFLQHQLPKVPNEGLQAIASYLLSTETLAHVSTHLGTKDLIQSTEYP--PSAES 196 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 V+ +L ++ ++ F+ Q+ L ++ L++ + Sbjct: 197 QAKSLHAVIGALASSSGIERAFIFVRDFICTQLNQKDLLEVWTPQEPIQLLEKICQERKL 256 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 E ++ G + + V + + +G + A + AA + L+ Sbjct: 257 GEAEPRLLGDCGKNTVLAAYQVGIYANRQLLGKGFGEDVKTATETAALDALQSI 310 >gi|21357105|ref|NP_649541.1| mitochondrial ribosomal protein L44 [Drosophila melanogaster] gi|7296746|gb|AAF52025.1| mitochondrial ribosomal protein L44 [Drosophila melanogaster] Length = 321 Score = 39.5 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 75/234 (32%), Gaps = 19/234 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRI 50 KR+G +F S L++A T S + ++ L G +I Sbjct: 67 LFAFGKRLGESFE-LSELQRAFTEKSFAEREEDRRRQLGIEESDLQMPHNSDLVEKGQQI 125 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + L + L + L+S ET + V+ L I+ + Sbjct: 126 ARAYVEAFLQHQLPKVPNEGLQAIASYLLSTETLAHVSTHLGTKDLIQSTEYP--PSAES 183 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 V+ +L ++ ++ F+ Q+ L ++ L++ + Sbjct: 184 QAKSLHAVIGALASSSGIERAFIFVRDFICTQLNQKDLLEVWTPQEPIQLLEKICQERKL 243 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 E ++ G + + V + + +G + A + AA + L+ Sbjct: 244 GEAEPRLLGDCGKNTVLAAYQVGIYANRQLLGKGFGEDVKTATETAALDALQSI 297 >gi|158339712|ref|YP_001520718.1| hypothetical protein AM1_A0060 [Acaryochloris marina MBIC11017] gi|158309953|gb|ABW31569.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 157 Score = 39.5 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 F V+ GL G SK+ A+ AA ++L Sbjct: 112 FRCSVQAMGLR-GVGEGVSKKKAKMGAARKLL 142 >gi|149698252|ref|XP_001503088.1| PREDICTED: similar to adenosine deaminase domain containing 1 (testis specific) isoform 2 [Equus caballus] Length = 566 Score = 39.5 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGLNKKESRSNAAKLALDE 161 Query: 223 E 223 Sbjct: 162 L 162 >gi|149698250|ref|XP_001503078.1| PREDICTED: similar to adenosine deaminase domain containing 1 (testis specific) isoform 1 [Equus caballus] Length = 577 Score = 39.5 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 V + K T +G P F + G+ G+ +K+ + AA L Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGLNKKESRSNAAKLALDE 161 Query: 223 E 223 Sbjct: 162 L 162 >gi|281343287|gb|EFB18871.1| hypothetical protein PANDA_013094 [Ailuropoda melanoleuca] Length = 584 Score = 39.5 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 14/37 (37%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P F + G+ G+ +K+ + AA L Sbjct: 133 PYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDEL 169 >gi|149060013|gb|EDM10829.1| rCG53269, isoform CRA_a [Rattus norvegicus] Length = 616 Score = 39.5 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 409 >gi|149048753|gb|EDM01294.1| testis nuclear RNA-binding protein [Rattus norvegicus] Length = 454 Score = 39.5 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 14/37 (37%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P F + G+ G+ +K+ + AA L Sbjct: 3 PYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDEL 39 >gi|119625638|gb|EAX05233.1| testis nuclear RNA-binding protein, isoform CRA_c [Homo sapiens] Length = 578 Score = 39.5 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 14/37 (37%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P F + G+ G+ +K+ + AA L Sbjct: 128 PYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDEL 164 >gi|324504592|gb|ADY41982.1| tRNA-dihydrouridine synthase 2-like protein [Ascaris suum] Length = 454 Score = 39.5 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLKREG 224 +D R+ ++E+ G + +KR AEQVAA L G Sbjct: 396 YDCKFRPNDKRYEALIEVDGCKFLSRVGQPNKRMAEQVAALAALVGLG 443 >gi|291240590|ref|XP_002740205.1| PREDICTED: RIKEN cDNA 1810030O07-like [Saccoglossus kowalevskii] Length = 838 Score = 39.5 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 1/64 (1%) Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVAAAEVL 220 + V + G + V + + SK + AEQ AA L Sbjct: 327 YTYILLSCIVCCFAYQIYILGILGRSLVSCEVTVGEQTYRSTIVTSKPKDAEQDAARVAL 386 Query: 221 KREG 224 G Sbjct: 387 VELG 390 >gi|326924609|ref|XP_003208518.1| PREDICTED: LOW QUALITY PROTEIN: NF-kappa-B-repressing factor-like [Meleagris gallopavo] Length = 713 Score = 39.5 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 395 NRMWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 431 >gi|149759351|ref|XP_001491812.1| PREDICTED: similar to NF-kappaB repressing factor [Equus caballus] Length = 784 Score = 39.5 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 467 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 503 >gi|308198210|ref|XP_001387150.2| predicted protein [Scheffersomyces stipitis CBS 6054] gi|149389085|gb|EAZ63127.2| predicted protein [Pichia stipitis CBS 6054] Length = 217 Score = 39.5 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 3/53 (5%) Query: 5 RYSTLEKRI--GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55 ++ + Y+ + L + LTH S + + E+L +G +IL L Sbjct: 47 NLKHIKDFLTEKYSIDD-DLALQVLTHKSFGNGIKPYNEKLSAMGSKILNLYF 98 >gi|148226408|ref|NP_001087383.1| ATP-dependent RNA helicase A-like protein [Xenopus laevis] gi|71153340|sp|Q68FK8|DHX9_XENLA RecName: Full=ATP-dependent RNA helicase A-like protein; AltName: Full=DEAH box protein 9; AltName: Full=Nuclear DNA helicase II; Short=NDH II gi|51262114|gb|AAH79701.1| MGC81010 protein [Xenopus laevis] Length = 1262 Score = 39.5 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 5/78 (6%) Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV----VE-ISGLAPAQGMD 205 + + + T + GPDH+ F V+ + A+ Sbjct: 176 HGNWTLENAKARLNQFFQKEKTQGEYKYSQVGPDHNRSFIAEMTLYVKQLGRKIIAREHG 235 Query: 206 CSKRAAEQVAAAEVLKRE 223 +K+ A Q A ++++ Sbjct: 236 SNKKLAAQSCALSIVRQL 253 Score = 39.1 bits (89), Expect = 0.50, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 1/53 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 +G + +F V I G G +K+ A+ +A + Sbjct: 12 CGKKKLTPNYEIRAAGNKNRQKFMCEVRIDGFNYIGMGNSTNKKDAQTNSARD 64 >gi|311276875|ref|XP_001927218.2| PREDICTED: NF-kappa-B-repressing factor-like [Sus scrofa] Length = 767 Score = 39.5 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 450 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 486 >gi|302689897|ref|XP_003034628.1| hypothetical protein SCHCODRAFT_107278 [Schizophyllum commune H4-8] gi|300108323|gb|EFI99725.1| hypothetical protein SCHCODRAFT_107278 [Schizophyllum commune H4-8] Length = 227 Score = 39.5 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 15/46 (32%) Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 + TP GP H P +T + G + SK+ Sbjct: 133 NYIQQLTGTPFRFEDKSHGPPHQPIWTSQLYFGGKLVGESQHSSKK 178 >gi|255638997|gb|ACU19799.1| unknown [Glycine max] Length = 168 Score = 39.5 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 12/78 (15%) Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA------PAQGMDCSKRA- 210 ++ L E + P ++ GPDH +FT V + G SK+ Sbjct: 85 RSRLYELCASYCWKPPSFECCKAEGPDHLKQFTCKVTLEIEEAQNLILEFVGEPLSKKKD 144 Query: 211 -AEQVAAAEV---LKREG 224 AE AA L+ EG Sbjct: 145 AAE-SAAEGAFWYLQHEG 161 >gi|308499431|ref|XP_003111901.1| CRE-PASH-1 protein [Caenorhabditis remanei] gi|308268382|gb|EFP12335.1| CRE-PASH-1 protein [Caenorhabditis remanei] Length = 757 Score = 39.5 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 7/25 (28%), Positives = 11/25 (44%) Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223 G +K+ A VAA + L + Sbjct: 423 EIGSGNGSNKKTARLVAAKDALSKL 447 >gi|219124880|ref|XP_002182722.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406068|gb|EEC46009.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 1021 Score = 39.5 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + ++G + F VV+E G G C+K AA+Q+AA L+ Sbjct: 380 CSKRQRTPSFLLQKAGYSGNFAFKVVLE-DGEEYGVGDGCTKIAAKQLAAKRSLQAL 435 >gi|26335267|dbj|BAC31334.1| unnamed protein product [Mus musculus] Length = 547 Score = 39.5 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 409 >gi|297742898|emb|CBI35689.3| unnamed protein product [Vitis vinifera] Length = 160 Score = 39.5 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 13/30 (43%) Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 VEI G +G + A+ AA + L Sbjct: 78 AQVEIDGQVLGKGTGSTWDDAKMQAAEKAL 107 >gi|296471316|gb|DAA13431.1| transcription factor NRF [Bos taurus] Length = 690 Score = 39.5 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 409 >gi|145489315|ref|XP_001430660.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|74830695|emb|CAI39097.1| Dicer-like ribonuclease with mutated helicase and Rnase III domains [Paramecium tetraurelia] gi|124397759|emb|CAK63262.1| unnamed protein product [Paramecium tetraurelia] Length = 1596 Score = 39.5 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 3/79 (3%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 +S+LE +I Y F + LL +A+T S +L+F Sbjct: 1295 FSSLEYKIKYQFKHFELLFQAMTDISFKFVINN---KLKFKYYEQFQKKEEFQGMIQEQQ 1351 Query: 66 AKEGELSVRFNSLVSAETC 84 E + + Sbjct: 1352 WIEFKSQFECMNETDQNNY 1370 >gi|148697036|gb|EDL28983.1| NF-kappaB repressing factor, isoform CRA_a [Mus musculus] Length = 708 Score = 39.5 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 391 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 427 >gi|115298524|ref|YP_762377.1| 47.7 kDa RNAse III [Spodoptera frugiperda ascovirus 1a] gi|114416791|emb|CAL44622.1| 47.7 kDa RNAse III [Spodoptera frugiperda ascovirus 1a] Length = 417 Score = 39.5 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 7/88 (7%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS-----TLLFNHFDSAKEGELSV 73 N + ALT S + +YE E++GD ++ I H G ++ Sbjct: 172 NMDKFQAALT--SKEYDNIFNYEYFEYIGDSVINRFIIDYIRENYTDIHNIQQDIGVMTK 229 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSS 101 + V S+ + L FIR Sbjct: 230 LRSIYVGKWNLSKCCVSIGLNKFIRCQY 257 >gi|291230324|ref|XP_002735119.1| PREDICTED: CG31301-like [Saccoglossus kowalevskii] Length = 530 Score = 39.5 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 16/38 (42%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P+ I+ + SK+ A+ ++A + L R Sbjct: 279 KPKHVCKTVINDQVVGVAIHESKKDAKSLSAEKALSRL 316 >gi|224613100|dbj|BAH24210.1| dsRNA-specific ribonuclease RNaseIII [Onion yellows phytoplasma] Length = 157 Score = 39.5 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 13/37 (35%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 T +YK+ GP H F V + G + Sbjct: 87 KTIQYKIVQEQGPAHSKNFVAEVYLEKNLLGTGEGST 123 >gi|296236275|ref|XP_002763246.1| PREDICTED: NF-kappa-B-repressing factor-like [Callithrix jacchus] Length = 952 Score = 39.5 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 635 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 671 >gi|156523218|ref|NP_001096023.1| transcription factor NRF [Bos taurus] gi|133777427|gb|AAI14698.1| NKRF protein [Bos taurus] Length = 690 Score = 39.5 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 409 >gi|115491843|ref|XP_001210549.1| hypothetical protein ATEG_00463 [Aspergillus terreus NIH2624] gi|114197409|gb|EAU39109.1| hypothetical protein ATEG_00463 [Aspergillus terreus NIH2624] Length = 396 Score = 39.5 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 47/158 (29%), Gaps = 8/158 (5%) Query: 67 KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126 R + VS + R + F A V +++ ++ Sbjct: 208 PTRPNDDRKSWRVSMTS-----RVVYDNEFGEPPQSRAPSQGVTAEQASATFVRAVMGSI 262 Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSG-P 183 YL G A F ++++ R L + +L + P K+ +G Sbjct: 263 YLHAGRPAAKRFFEQHFLSRHLNISELFNFSQPARDLSRLCARENFEPPVAKIISETGRK 322 Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P F V + +G S A AA LK Sbjct: 323 SRHPVFVVGIYSGQDKLGEGAGASLLEARSRAAVAALK 360 >gi|34098365|sp|Q8BY02|NKRF_MOUSE RecName: Full=NF-kappa-B-repressing factor; Short=NFkB-repressing factor; AltName: Full=Transcription factor NRF Length = 690 Score = 39.5 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 409 >gi|322511164|gb|ADX06477.1| putative ribonuclease III [Organic Lake phycodnavirus 2] Length = 92 Score = 39.5 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 40/78 (51%) Query: 37 QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96 Q S ERLEF+GD IL ++ L+ F A EG ++ + +LV + ++A +L L + Sbjct: 15 QSSNERLEFIGDGILEMITKYYLYKRFPDADEGFMTEKKINLVKNDHIGKLAYKLGLHKW 74 Query: 97 IRVSSDLRKDVCSFMTSI 114 + +S + +T Sbjct: 75 LLLSKQSEEKKIDVITKN 92 >gi|313237547|emb|CBY12695.1| unnamed protein product [Oikopleura dioica] Length = 853 Score = 39.5 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 3/74 (4%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV--VVEISGLAPA-QGMDCSKR 209 + SG + +F +EI G A +K+ Sbjct: 384 NWTLELARSRLSEFFHKQGKQLNCEEKESGGPFNKQFVCSTEIEIDGEKFAASATAPNKK 443 Query: 210 AAEQVAAAEVLKRE 223 +A++ A ++ + Sbjct: 444 SAQKKCALSMVIQL 457 >gi|312212763|emb|CBX92846.1| hypothetical protein [Leptosphaeria maculans] Length = 1067 Score = 39.1 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKAL--THSSISHSYQ------ESYERLEFLGDRILGLL 54 A+R +E R GY F N+ L +AL T + Y+ + RL LGDR+LGL Sbjct: 124 AVRVGHIEARTGYNFKNKFLCIEALKNTGKNWPLYYKGVVVEIDRNNRLALLGDRVLGLA 183 Query: 55 ISTLLFNHFD 64 + + F+ Sbjct: 184 LCEIWFHSGH 193 >gi|321253836|ref|XP_003192868.1| hypothetical protein CGB_C5540W [Cryptococcus gattii WM276] gi|317459337|gb|ADV21081.1| hypothetical protein CNC03670 [Cryptococcus gattii WM276] Length = 972 Score = 39.1 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 9/102 (8%) Query: 2 SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF- 60 + + + L +A+T + + + +YERLE LGD +L + + + Sbjct: 487 EEMSAKEFNSIL-----DPELALQAITAAEGLNVPRWTYERLEILGDTLLKFITTLHFYL 541 Query: 61 ---NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 ++ + L+S T + A + L +IR Sbjct: 542 LGGGADSEVDMNKVWQDRHMLISNRTLTANAVKQGLVKYIRN 583 >gi|303282409|ref|XP_003060496.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457967|gb|EEH55265.1| predicted protein [Micromonas pusilla CCMP1545] Length = 661 Score = 39.1 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 5/44 (11%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL-----KREGIW 226 +F V I G + A+ +K++A + A + L ++EG W Sbjct: 529 QFVADVRIHGRSLARARGKTKKSAIRAATSRALDVVRAEKEGKW 572 >gi|78191784|ref|NP_084167.2| NF-kappa-B-repressing factor [Mus musculus] gi|123231949|emb|CAM19779.1| NF-kappaB repressing factor [Mus musculus] gi|187951215|gb|AAI38829.1| NF-kappaB repressing factor [Mus musculus] gi|187956749|gb|AAI38830.1| NF-kappaB repressing factor [Mus musculus] Length = 690 Score = 39.1 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 409 >gi|261327625|emb|CBH10601.1| ATP-dependent DEAH-box RNA helicase, putative [Trypanosoma brucei gambiense DAL972] Length = 1439 Score = 39.1 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 2/42 (4%) Query: 187 PRFTVVVEISG--LAPAQGMDCSKRAAEQVAAAEVLKREGIW 226 F + + A G+ S + A+Q A L + Sbjct: 292 RIFVATLLLDDTSQLSATGVATSLKEAKQRCAMHALNILKLI 333 >gi|224613107|dbj|BAH24216.1| dsRNA-specific ribonuclease RNaseIII [Onion yellows phytoplasma] Length = 149 Score = 39.1 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 13/37 (35%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 T +YK+ GP H F V + G + Sbjct: 79 KTIQYKIVQEQGPAHSKNFVAEVYLEKNLLGTGEGST 115 >gi|293351174|ref|XP_002727718.1| PREDICTED: NF-kappaB repressing factor-like [Rattus norvegicus] Length = 780 Score = 39.1 bits (89), Expect = 0.42, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 466 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 502 >gi|56567165|gb|AAV98578.1| mitochondrial ribosomal protein L44 [Macaca mulatta] Length = 78 Score = 39.1 bits (89), Expect = 0.42, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 16/37 (43%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P + V + A+G + AE+ AA L++ Sbjct: 14 PLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 50 >gi|303320123|ref|XP_003070061.1| 54S ribosomal protein L3, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|240109747|gb|EER27916.1| 54S ribosomal protein L3, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|320031896|gb|EFW13853.1| 60S ribosomal protein L3 [Coccidioides posadasii str. Silveira] Length = 372 Score = 39.1 bits (89), Expect = 0.43, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 1/100 (1%) Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 L+ + +Q + +L + + P ++ +G Sbjct: 237 AIYLHCGRPVAKQFFKEHFMSRQLPVADLFSFAQPTRDLTKLCAREGFERPVARIISETG 296 Query: 183 P-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P F V + +G S A AA LK Sbjct: 297 RLSRHPVFVVGIFSGADLLGEGSGPSLTEARFRAAVAALK 336 >gi|169595488|ref|XP_001791168.1| hypothetical protein SNOG_00483 [Phaeosphaeria nodorum SN15] gi|111070858|gb|EAT91978.1| hypothetical protein SNOG_00483 [Phaeosphaeria nodorum SN15] Length = 167 Score = 39.1 bits (89), Expect = 0.43, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 10/99 (10%) Query: 1 MSAL--RYSTLEKRIGYAFANRSLLEKAL---THSSISH-----SYQESYERLEFLGDRI 50 M+ + + + +E+ IGY + ++ + +AL + LE +GD I Sbjct: 1 MANIEQKIAIIEQIIGYIYTDKLICLEALQMNMDPMYVSLGGIRHLVRKNKNLETVGDAI 60 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 + ++ + DS +F+S + Sbjct: 61 IDAVLCKKWYEFRDSHGHRLSVEQFDSQIRQRNACNNFF 99 >gi|124487075|ref|NP_001074679.1| 39S ribosomal protein L44, mitochondrial precursor [Mus musculus] gi|74142583|dbj|BAE33863.1| unnamed protein product [Mus musculus] gi|148684323|gb|EDL16270.1| mCG21676 [Mus musculus] Length = 333 Score = 39.1 bits (89), Expect = 0.43, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 68/236 (28%), Gaps = 21/236 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48 R+ F+ LL+ A +S S + + L G Sbjct: 72 VQAFGSRLQETFS-LDLLKTAFINSCYIKSEEAKRQSLGIEKEAALLNLKDNQELFEQGL 130 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ L + F + L VAR L + + Sbjct: 131 SFSHRCLTQFLEDEFPDLPAEGTESLVSFLTGEAVVCHVARNLAVEQLTLSAEFPVPL-- 188 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + V+ +L+ + + F+ + L + L E + Sbjct: 189 PVLRQTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWTVVNPMGLLVEELKKR 248 Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 249 NISAPESRLTRQSGSTTALPLYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 304 >gi|74222039|dbj|BAE26840.1| unnamed protein product [Mus musculus] Length = 308 Score = 39.1 bits (89), Expect = 0.43, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 68/236 (28%), Gaps = 21/236 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48 R+ F+ LL+ A +S S + + L G Sbjct: 47 VQAFGSRLQETFS-LDLLKTAFINSCYIKSEEAKRQSLGIEKEAALLNLKDNQELFEQGL 105 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ L + F + L VAR L + + Sbjct: 106 SFSHRCLTQFLEDEFPDLPAEGTESLVSFLTGEAVVCHVARNLAVEQLTLSAEFPVPL-- 163 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + V+ +L+ + + F+ + L + L E + Sbjct: 164 PVLRQTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWTVVNPMGLLVEELKKR 223 Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 224 NISAPESRLTRQSGSTTALPLYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 279 >gi|74151695|dbj|BAE29642.1| unnamed protein product [Mus musculus] gi|74199060|dbj|BAE30743.1| unnamed protein product [Mus musculus] Length = 292 Score = 39.1 bits (89), Expect = 0.43, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 68/236 (28%), Gaps = 21/236 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48 R+ F+ LL+ A +S S + + L G Sbjct: 31 VQAFGSRLQETFS-LDLLKTAFINSCYIKSEEAKRQSLGIEKEAALLNLKDNQELFEQGL 89 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ L + F + L VAR L + + Sbjct: 90 SFSHRCLTQFLEDEFPDLPAEGTESLVSFLTGEAVVCHVARNLAVEQLTLSAEFPVPL-- 147 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + V+ +L+ + + F+ + L + L E + Sbjct: 148 PVLRQTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWTVVNPMGLLVEELKKR 207 Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 208 NISAPESRLTRQSGSTTALPLYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 263 >gi|68053231|sp|Q9CY73|RM44_MOUSE RecName: Full=39S ribosomal protein L44, mitochondrial; Short=L44mt; Short=MRP-L44; Flags: Precursor Length = 333 Score = 39.1 bits (89), Expect = 0.43, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 68/236 (28%), Gaps = 21/236 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48 R+ F+ LL+ A +S S + + L G Sbjct: 72 VQAFGSRLQETFS-LDLLKTAFINSCYIKSEEAKRQSLGIEKEAALLNLKDNQELFEQGL 130 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ L + F + L VAR L + + Sbjct: 131 SFSHRCLTQFLEDEFPDLPAEGTESLVSFLTGEAVVCHVARNLAVEQLTLSAEFPVPL-- 188 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + V+ +L+ + + F+ + L + L E + Sbjct: 189 PVLRQTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWPVVNPMGLLVEELKKR 248 Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 249 DISAPESRLTRQSGSTTALPLYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 304 >gi|109510373|ref|XP_233308.4| PREDICTED: NF-kappaB repressing factor [Rattus norvegicus] Length = 783 Score = 39.1 bits (89), Expect = 0.43, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 466 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 502 >gi|328862737|gb|EGG11837.1| hypothetical protein MELLADRAFT_76432 [Melampsora larici-populina 98AG31] Length = 1308 Score = 39.1 bits (89), Expect = 0.43, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 18/38 (47%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 R TVV + G D SK+ AE++AA + G Sbjct: 81 QRVTVVADTGTNIIGTGDDPSKKEAEKLAALSACFQLG 118 >gi|254572081|ref|XP_002493150.1| Mitochondrial ribosomal protein of the large subunit [Pichia pastoris GS115] gi|238032948|emb|CAY70971.1| Mitochondrial ribosomal protein of the large subunit [Pichia pastoris GS115] gi|328352834|emb|CCA39232.1| 54S ribosomal protein L3, mitochondrial [Pichia pastoris CBS 7435] Length = 355 Score = 39.1 bits (89), Expect = 0.43, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +P F V + +G S A+ A LK+ Sbjct: 288 NPIFIVGIFSGNDKLGEGQGPSILKAKTDACINSLKQ 324 >gi|189189610|ref|XP_001931144.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187972750|gb|EDU40249.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 949 Score = 39.1 bits (89), Expect = 0.43, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 10/95 (10%) Query: 8 TLEKRIGYAFANRSLLEKAL-----THSSISHS---YQESYERLEFLGDRILGLLISTLL 59 +E+ IGY F + +AL T + RL LGDR L L +S + Sbjct: 90 RVEESIGYTFKYKLYCIEALKQTNSTTPLYFQGVVINTDCNRRLALLGDRALDLALSEIW 149 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94 F + + V+ + +++L Sbjct: 150 F--YTGNTLANYTAMSLKTVTRAALNTQGLQINLH 182 >gi|224049213|ref|XP_002188195.1| PREDICTED: similar to testis nuclear RNA-binding protein [Taeniopygia guttata] Length = 552 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 21/61 (34%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + E+K T G P F I+G+ G+ +K+ + AA L Sbjct: 102 HLYAKMHHLQLEFKETNLEGDIIRPYFAYCAVINGVCYKTGLGKNKKECKLNAAKLTLAE 161 Query: 223 E 223 Sbjct: 162 L 162 >gi|14249969|gb|AAH08370.1| STAU2 protein [Homo sapiens] Length = 105 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + F+V + + + S + A+Q A + L Sbjct: 5 NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38 >gi|313219943|emb|CBY43644.1| unnamed protein product [Oikopleura dioica] Length = 813 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 1/103 (0%) Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173 Q + + + ++ WK + + + + Sbjct: 74 YQKKLFSAAQNYMGKKQKQDLMDNIRRFNWKVQNGQKSSRIKANDIKGYLHIWCNQRRVT 133 Query: 174 EYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVA 215 G H F+ ++ISGL A SK+ A+ A Sbjct: 134 PEFDYKELGNRHKKLFSCSIQISGLDFVAIKEARSKKEAQNEA 176 >gi|284504268|ref|YP_003406983.1| ribonuclease III [Marseillevirus] gi|282935706|gb|ADB04021.1| ribonuclease III [Marseillevirus] Length = 312 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77 N + A TH ++ + + +YE E +GD ++ I + + E R Sbjct: 29 KNLAKFRVAFTHKTVQTNDRNNYELYELVGDSLVNAAILGFIRTKRPEITDVETLTRIKH 88 Query: 78 LVSAETC 84 + + + Sbjct: 89 YIQSRSF 95 >gi|119495412|ref|XP_001264491.1| 60S ribosomal protein L3 [Neosartorya fischeri NRRL 181] gi|119412653|gb|EAW22594.1| 60S ribosomal protein L3 [Neosartorya fischeri NRRL 181] Length = 406 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 1/70 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +L + P K+ +G P F V + +G S A Sbjct: 301 NFSQPARDLTRLCARENFERPVAKIISETGRKSRHPVFVVGIYSGQDKLGEGAGASLMEA 360 Query: 212 EQVAAAEVLK 221 AA LK Sbjct: 361 RSRAAVAALK 370 Score = 38.8 bits (88), Expect = 0.65, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 3/96 (3%) Query: 2 SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + + + L R+ Y + L L +AL SS + + E L LG +L S L Sbjct: 81 ESAKLAALHARL-YLPSRLPLETLARALVDSSADPNPDFNNESLATLGHDLLTNYTSEHL 139 Query: 60 FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95 + + + V +T S +ARE + Sbjct: 140 ICTYPRLPLTVIFAAMYAYVGPKTLSAMAREWGVEM 175 >gi|42820678|emb|CAF31991.1| possible ribonuclease III [Aspergillus fumigatus] Length = 394 Score = 39.1 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 1/70 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +L + P K+ +G P F V + +G S A Sbjct: 289 NFSQPARDLTRLCARENFERPVAKIISETGRKSRHPVFVVGIYSGQDKLGEGAGASLMEA 348 Query: 212 EQVAAAEVLK 221 AA LK Sbjct: 349 RSRAAVAALK 358 Score = 35.7 bits (80), Expect = 4.6, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 3/68 (4%) Query: 2 SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + + + L R+ Y + L L +AL +S + + E L LG +L S L Sbjct: 81 ESAKLAALHARL-YLPSRLPLETLARALVDASADPNPDFNNESLATLGHDLLTNYTSEHL 139 Query: 60 FNHFDSAK 67 + Sbjct: 140 ICTYPRLP 147 >gi|242044684|ref|XP_002460213.1| hypothetical protein SORBIDRAFT_02g024705 [Sorghum bicolor] gi|241923590|gb|EER96734.1| hypothetical protein SORBIDRAFT_02g024705 [Sorghum bicolor] Length = 172 Score = 39.1 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 7/54 (12%) Query: 174 EYKVTFRSGPDHDPRFTVVVEI--SGLAPAQGMDCS-----KRAAEQVAAAEVL 220 GP H+ F V + GL S K+AA + AA L Sbjct: 108 PQFDFEEQGPQHNKTFKCKVTVHLDGLLNTIMECFSKPNPRKKAARENAAQGAL 161 >gi|72255535|ref|NP_001026820.1| 39S ribosomal protein L44, mitochondrial [Rattus norvegicus] gi|71051110|gb|AAH98715.1| Mitochondrial ribosomal protein L44 [Rattus norvegicus] gi|149016242|gb|EDL75488.1| mitochondrial ribosomal protein L44 [Rattus norvegicus] Length = 332 Score = 39.1 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 21/236 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48 R+ AF+ LL+ A +S S + + L G Sbjct: 72 IQAFGSRLQEAFS-LDLLKTAFVNSCYIKSEEAKRQNLGIEKEAALLNLKDNQELFEQGL 130 Query: 49 RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108 ++ L + F + + N L VA L + + Sbjct: 131 SFSHRCLTQFLEDEFPNLPTEGIESLVNFLTGEAVVCHVASNLAVEQLTLSAEFPVPQ-- 188 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + V+ +L+ + + F+ + L + L E + Sbjct: 189 PVLRRTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWTIVNPMGLLVEELKKR 248 Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++T +SG P + V + A+G + AE+ AA L++ Sbjct: 249 NISAPESRLTRQSGSTTALPLYFVGLYCDKRLIAEGPGETVLVAEEEAARVALRKL 304 >gi|198473861|ref|XP_001356477.2| GA20129 [Drosophila pseudoobscura pseudoobscura] gi|198138140|gb|EAL33541.2| GA20129 [Drosophila pseudoobscura pseudoobscura] Length = 314 Score = 39.1 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211 RD EL+++ P ++ + G P F ++ + S K+ A Sbjct: 96 NRDMLKELRDYCVRHEMPLPLIEIVQQCGTPDAPEFLACCSVASIKR---YGKSDKKKDA 152 Query: 212 EQVAAAEVL 220 Q AA E+L Sbjct: 153 RQRAAIEML 161 >gi|195147336|ref|XP_002014636.1| GL19287 [Drosophila persimilis] gi|194106589|gb|EDW28632.1| GL19287 [Drosophila persimilis] Length = 314 Score = 39.1 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211 RD EL+++ P ++ + G P F ++ + S K+ A Sbjct: 96 NRDMLKELRDYCVRHEMPLPLIEIVQQCGTPDAPEFLACCSVASIKR---YGKSDKKKDA 152 Query: 212 EQVAAAEVL 220 Q AA E+L Sbjct: 153 RQRAAIEML 161 >gi|289619592|emb|CBI53875.1| unnamed protein product [Sordaria macrospora] Length = 441 Score = 39.1 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 37/110 (33%), Gaps = 3/110 (2%) Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD--AKTELQEWAHAKFGVT 172 A V +++ A+Y G E A FV + R L K EL + Sbjct: 294 HAHFVRAVVGAIYAHCGREAAKAFVKGHIMSRTLDIAKLFEFKYPTRELAALCAREDFEP 353 Query: 173 PEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P ++ +G P F V + +G S A AA LK Sbjct: 354 PVARLVSETGRQSRTPVFVVGIYSGSDKLGEGAGASLDHARFKAAMNALK 403 >gi|148697037|gb|EDL28984.1| NF-kappaB repressing factor, isoform CRA_b [Mus musculus] Length = 751 Score = 39.1 bits (89), Expect = 0.50, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 434 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 470 >gi|170037638|ref|XP_001846663.1| ribonuclease iii [Culex quinquefasciatus] gi|167880947|gb|EDS44330.1| ribonuclease iii [Culex quinquefasciatus] Length = 166 Score = 39.1 bits (89), Expect = 0.50, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 15/45 (33%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + P + + G A S + AE AA + L+ Sbjct: 64 IECNSPTSTRVYMMADYFRGKGLACSNGHSTQQAEMNAAKQALEN 108 >gi|50306031|ref|XP_452977.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49642110|emb|CAH01828.1| KLLA0C17402p [Kluyveromyces lactis] Length = 241 Score = 39.1 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 1/48 (2%) Query: 11 KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58 ++ G + ++ + LTH S + + ++L +G + Sbjct: 66 EKYGIDLPD-DIITQCLTHKSFAQGIKPYNQKLSIIGGHFVKYQACLH 112 >gi|316973958|gb|EFV57499.1| putative double-stranded RNA binding motif protein [Trichinella spiralis] Length = 514 Score = 38.8 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 8/24 (33%), Positives = 11/24 (45%) Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223 G SK+ A+ AA + LK Sbjct: 265 IGVGNGNSKKNAKLEAARQALKVL 288 >gi|195343659|ref|XP_002038413.1| GM10632 [Drosophila sechellia] gi|194133434|gb|EDW54950.1| GM10632 [Drosophila sechellia] Length = 321 Score = 38.8 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 73/234 (31%), Gaps = 19/234 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRI 50 KR+G +F S L++A T S + + L G I Sbjct: 67 LFAFGKRLGESFE-LSELQRAFTEKSFAEREENRRRQLGIEESDLQMPHNSDLVEKGQHI 125 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + L + L + L+S ET + V+ L I+ + Sbjct: 126 ARAYVEAFLQHQLPKVPNEGLQAIASFLLSTETLAHVSSHLGTKDLIQSTEYP--PSAES 183 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 + V+ +L ++ ++ F+ Q+ L + L++ + Sbjct: 184 LAKSLHAVIGALASSSGIERAFIFVRDFICTQLNQKDLLDVWTPQKPIQLLEKICQERKL 243 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 E ++ G + + V + + +G + A + AA + L+ Sbjct: 244 GEAEPRLLGDCGKNTVLAAYQVGIYANRQLLGKGFGEDVKTATETAALDALQSI 297 >gi|195036694|ref|XP_001989803.1| GH18997 [Drosophila grimshawi] gi|193893999|gb|EDV92865.1| GH18997 [Drosophila grimshawi] Length = 321 Score = 38.8 bits (88), Expect = 0.53, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 68/234 (29%), Gaps = 19/234 (8%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRI 50 KR+ F LL+ A T + +H QE +L G I Sbjct: 67 LFAFGKRLNEDFQ-LPLLQTAFTQRTYAHQEQERQRKLGIAEADLQMGDNSQLATKGVHI 125 Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 I L N + L+S ET + V L I + Sbjct: 126 AKAYIEAYLQNALPKVPPVGQQAIASYLLSTETLAHVCTHLGAKELIFSTEYP--PSSET 183 Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 + ++ +L + ++ F+ Q+ L L E K Sbjct: 184 LAQTLHAIIGALSDSSGVERAFLFVRDFICTQLNQKDLLEIWTPEQPLQLLGEICTQKKL 243 Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++ G + + V + + +G + A + AA + L+ Sbjct: 244 GEPEPRLLGDCGKNTVLAAYHVGIYANRQLLGKGFGEDLQMATETAAIDALQTL 297 >gi|313214863|emb|CBY41096.1| unnamed protein product [Oikopleura dioica] Length = 750 Score = 38.8 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 3/74 (4%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV--VVEISGLAPA-QGMDCSKR 209 + SG + +F +EI G A +K+ Sbjct: 384 NWTLELARSRLSEFFHKQGKQLNCEEKESGGPFNKQFVCSTEIEIDGEKFAASATAPNKK 443 Query: 210 AAEQVAAAEVLKRE 223 +A++ A ++ + Sbjct: 444 SAQKKCALSMVIQL 457 >gi|21226646|ref|NP_632568.1| exoribonuclease II [Methanosarcina mazei Go1] gi|20904927|gb|AAM30240.1| Exoribonuclease II [Methanosarcina mazei Go1] Length = 605 Score = 38.8 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 G + P FT G + + G K+ A+++AA ++ Sbjct: 555 YSFEMEGATNRPIFTCTCTF-GSSTSTGQAGKKQRAKRLAARAMI 598 >gi|145486836|ref|XP_001429424.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|74830341|emb|CAI39051.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia] gi|124396516|emb|CAK62026.1| unnamed protein product [Paramecium tetraurelia] Length = 725 Score = 38.8 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 5/175 (2%) Query: 15 YAFA---NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71 Y N +E+A++ S + Q +Y+ LE LGD ++ L S +LF E L Sbjct: 336 YKINRLANLDRVEEAISCPSFNS--QRNYQNLEMLGDVVIKYLTSAMLFEDSKYKTENTL 393 Query: 72 SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131 S L++ + S + L L + + + M + + + Sbjct: 394 SSARVRLITNKHLSSIYGNLKLNAMNFKINSKKLLNHMMMIINEHEDSKLSQKQQADIYE 453 Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 ++ Y + + K + + + ++ G D+D Sbjct: 454 ALCGACYIKNYQFKDLMDFFKLTKLEFQGTVPQYYKGNPLIDFSIISQDPGKDND 508 Score = 36.1 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 11/71 (15%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65 + + +G +L+ +A+T + +ERLEF GD IL LL+ + + Sbjct: 530 FEEFQDYLGCK---LNLIAEAMT--------VDQFERLEFFGDAILELLVIVNVHKECEK 578 Query: 66 AKEGELSVRFN 76 + Sbjct: 579 LYYNPRQQQLC 589 >gi|157107592|ref|XP_001649849.1| hypothetical protein AaeL_AAEL004808 [Aedes aegypti] gi|108879546|gb|EAT43771.1| conserved hypothetical protein [Aedes aegypti] Length = 919 Score = 38.8 bits (88), Expect = 0.57, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 51/165 (30%), Gaps = 3/165 (1%) Query: 45 FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL--ASFIRVSSD 102 F G + L L + S++ + V+ + +++ + + Sbjct: 734 FFGSTGVQCLTPRELAEGYQPW-AKRDSMKQTAPVTGGMGMHLLQKMGWVPGEGLGKEKN 792 Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 + + + + ++ + + ++K + + L Sbjct: 793 GSLEPLLLDVKLDKRGLVASAEDHQRQVQFQIQQQHSGRRARFMSVKINTDGKHPVSILG 852 Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 E+ + + P Y + SGP H F V ++GL + + Sbjct: 853 EYCSKRKWMPPRYDLVHESGPGHAKNFVFKVIVNGLEYQPAIANN 897 >gi|319803056|ref|NP_001188373.1| ATP-dependent RNA helicase A-like [Danio rerio] Length = 1270 Score = 38.8 bits (88), Expect = 0.58, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 1/53 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 +G + +F V + + G +K+ A+ AA + Sbjct: 12 CGKKKLTPNYDIRAAGNKNRQKFMCEVRVESYSYIGMGNSTNKKDAQSNAARD 64 >gi|169154685|emb|CAQ13278.1| novel protein similar to vertebrate DEAH (Asp-Glu-Ala-His) box polypeptide 9 (DHX9) [Danio rerio] Length = 1271 Score = 38.8 bits (88), Expect = 0.58, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 1/53 (1%) Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218 +G + +F V + + G +K+ A+ AA + Sbjct: 12 CGKKKLTPNYDIRAAGNKNRQKFMCEVRVESYSYIGMGNSTNKKDAQSNAARD 64 >gi|72388056|ref|XP_844452.1| ATP-dependent DEAH-box RNA helicase [Trypanosoma brucei TREU927] gi|62359371|gb|AAX79809.1| ATP-dependent DEAH-box RNA helicase, putative [Trypanosoma brucei] gi|70800985|gb|AAZ10893.1| ATP-dependent DEAH-box RNA helicase, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 1440 Score = 38.8 bits (88), Expect = 0.58, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 2/41 (4%) Query: 187 PRFTVVVEISG--LAPAQGMDCSKRAAEQVAAAEVLKREGI 225 F + + A G+ S + A+Q A L + Sbjct: 292 RIFVATLLLDDTSQLSATGVATSLKEAKQRCAMHALNILKL 332 >gi|145473673|ref|XP_001462500.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|74830346|emb|CAI39052.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia] gi|124430340|emb|CAK95127.1| unnamed protein product [Paramecium tetraurelia] Length = 721 Score = 38.8 bits (88), Expect = 0.60, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 11/74 (14%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 E+ +G S L +A+T E YERLEFLGD IL LI + Sbjct: 519 NQSLDKFEQFLGCK---LSRLNEAMT--------VEDYERLEFLGDAILEFLIVANVHKE 567 Query: 63 FDSAKEGELSVRFN 76 + + + Sbjct: 568 CEKYYYSQDQQQMC 581 >gi|242218623|ref|XP_002475100.1| predicted protein [Postia placenta Mad-698-R] gi|220725717|gb|EED79692.1| predicted protein [Postia placenta Mad-698-R] Length = 154 Score = 38.8 bits (88), Expect = 0.60, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 25/92 (27%) Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192 E K+ + ++ T T + + P + + Sbjct: 54 ETGSCRRMTILNPEVRKAKRSGMNSYNTTSNNGATPQAPTALRWETRQVMSEDPPNWEAI 113 Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 I +G S AA+ +AA LK Sbjct: 114 AYIHDTDFGRGTGISLPAAKDIAAERALKELK 145 >gi|61097971|ref|NP_001012905.1| NF-kappa-B-repressing factor [Gallus gallus] gi|53136634|emb|CAG32646.1| hypothetical protein RCJMB04_31o11 [Gallus gallus] Length = 768 Score = 38.8 bits (88), Expect = 0.61, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 450 NRMWRCRVYLQDHCLAEGYG-TKKTSKHTAADEALKIL 486 >gi|331219058|ref|XP_003322206.1| ATP-dependent RNA helicase A [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309301196|gb|EFP77787.1| ATP-dependent RNA helicase A [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1575 Score = 38.8 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 3/94 (3%) Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH-DPRFTVV 192 + K+W ++ ++ K L + P+Y P P F Sbjct: 80 YNSQEIRKFWTANLPPRPEWSQNPKGILNNFCQHLTHPLPKYHSQQVILPGFTQPLFRAT 139 Query: 193 VEISG--LAPAQGMDCSKRAAEQVAAAEVLKREG 224 V + G D SK+ AE++AA V + G Sbjct: 140 VHLEIAPDIVGIGDDLSKKEAEKIAALSVCFQLG 173 >gi|311273132|ref|XP_001926172.2| PREDICTED: 39S ribosomal protein L44, mitochondrial-like [Sus scrofa] Length = 118 Score = 38.8 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 16/37 (43%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P + V + A+G + AE+ AA L++ Sbjct: 54 PVYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 90 >gi|312074021|ref|XP_003139783.1| hypothetical protein LOAG_04198 [Loa loa] gi|307765056|gb|EFO24290.1| hypothetical protein LOAG_04198 [Loa loa] Length = 184 Score = 38.8 bits (88), Expect = 0.64, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQ 213 + + L E K P++ SGP ++ RF ++G+ SK+ + Sbjct: 92 KHPVSVLMELCSKKRWHAPQFTCLE-SGPSNNRRFLWKAVVNGVEYQPSTPSTSKKTGKA 150 Query: 214 VAAAEVLKREGI 225 A VL+ G+ Sbjct: 151 QACQVVLQSLGL 162 >gi|47204712|emb|CAF92259.1| unnamed protein product [Tetraodon nigroviridis] Length = 54 Score = 38.8 bits (88), Expect = 0.64, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F V + + G G +++AA AA + L+ Sbjct: 8 KIFFVQLSV-GSYEFIGEGRTRQAARHSAAMKALQTL 43 >gi|328715219|ref|XP_003245565.1| PREDICTED: hypothetical protein LOC100573606 [Acyrthosiphon pisum] Length = 339 Score = 38.8 bits (88), Expect = 0.65, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 F V VEI + G+ SK+AA++ E +K Sbjct: 289 VFNVKVEIDNITF-TGLGSSKKAAKRECCIEAIK 321 Score = 37.2 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ R+T +++ G G SK A+Q A L+ Sbjct: 129 NNVKRYTATLQVDGQVY-TGNHNSKIKAKQKACEHFLR 165 >gi|195132297|ref|XP_002010580.1| GI14602 [Drosophila mojavensis] gi|193909030|gb|EDW07897.1| GI14602 [Drosophila mojavensis] Length = 338 Score = 38.8 bits (88), Expect = 0.66, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 D FT +V ++ +G SK AA+ +A + L+ Sbjct: 114 DGGFTAIVTVNTRQY-EGKGPSKMAAKNLACEKALR 148 >gi|148671307|gb|EDL03254.1| mCG115971 [Mus musculus] Length = 102 Score = 38.8 bits (88), Expect = 0.68, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 9 LEKRIGYAFANRSLLEKALTHSSISHSYQES 39 L+K IGY F +R LL+ A+TH S ++ + Sbjct: 21 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 51 >gi|26347803|dbj|BAC37550.1| unnamed protein product [Mus musculus] Length = 329 Score = 38.4 bits (87), Expect = 0.69, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + + V + A+G +K+ ++ AA E LK Sbjct: 12 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 48 >gi|58332356|ref|NP_001011033.1| ATP-binding cassette, sub-family A (ABC1), member 4 [Xenopus (Silurana) tropicalis] gi|46393906|gb|AAS91491.1| retinal-specific ATP transporter ABCA4 [Xenopus (Silurana) tropicalis] Length = 2359 Score = 38.4 bits (87), Expect = 0.69, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 4/67 (5%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG--MDCSKRAAEQVAAAE 218 + + + P H+ F + + S++ AE+ A Sbjct: 1055 VWVRGRDIQTHMDSIRQSLGMCPQHNILFR-HLTVEEHILFYAQLKGKSRKQAERQA-EV 1112 Query: 219 VLKREGI 225 +L+ GI Sbjct: 1113 MLEDMGI 1119 >gi|113931358|ref|NP_001039125.1| NFKB repressing factor [Xenopus (Silurana) tropicalis] gi|89268905|emb|CAJ81865.1| similar to nkrf (NF-kappaB repressing factor) [Xenopus (Silurana) tropicalis] gi|111305543|gb|AAI21306.1| NFKB repressing factor [Xenopus (Silurana) tropicalis] Length = 791 Score = 38.4 bits (87), Expect = 0.69, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224 + V + G A+G +K+ ++ AA E ++ Sbjct: 483 WKCSVFVQGHCVAEGYG-NKKNSKHAAAKEAVRILK 517 >gi|145551869|ref|XP_001461611.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124429446|emb|CAK94238.1| unnamed protein product [Paramecium tetraurelia] Length = 313 Score = 38.4 bits (87), Expect = 0.69, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 73/239 (30%), Gaps = 29/239 (12%) Query: 16 AFANRSLLEKAL---TH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66 F N+ LL +AL H + + E G +++ + Sbjct: 7 EFRNQKLLVQALSNKIHETEYFQKTGKLYQYGNNEEFSIDGQQLIEFYFYDYMLLQGFPN 66 Query: 67 KEGELSVRFNSLVSAE---TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123 ++ + + + + ++ L + + S + + +D ++S+I Sbjct: 67 QQSQFKKPSDIIQLRQRLINDKYLSEIATLLNLQNLVSVGNQKSLKNNPKVLSDCLKSVI 126 Query: 124 AALYLDGGIEVAGTFVDKYW---------KQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 A Y D ++ + ++ LK K+ + + Sbjct: 127 GAHYYDKQNDLEVLRDLIHPIIAQLLNKGQEIGLKKWKYNPKSSFLEFLNQYKGQLGINP 186 Query: 175 YKVTFRSGPD-----HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKREGI 225 D ++ + + +E++ Q + +KR EQ E L++ I Sbjct: 187 KLTIEWKKDDTILNQNNSYYQITLELNSNFQIQKIGINKRETEQNVYQEALVYLRKLNI 245 >gi|162463399|ref|NP_001106055.1| ribonuclease III domain protein1 [Zea mays] gi|149980667|gb|ABR53724.1| chloroplast ribonuclease III domain protein [Zea mays] gi|194704042|gb|ACF86105.1| unknown [Zea mays] gi|195647406|gb|ACG43171.1| RNA binding protein [Zea mays] gi|223950477|gb|ACN29322.1| unknown [Zea mays] Length = 525 Score = 38.4 bits (87), Expect = 0.72, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 51/186 (27%), Gaps = 14/186 (7%) Query: 22 LLEKALTH--SSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 L A H S + + RL FLG +L L + G + R Sbjct: 156 LFYLAFQHLDPSSERTRMRHVRNGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 215 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 +L+ + + + L + + DL K + V ++ A+YL G+ Sbjct: 216 FALIGKKVLPRWLKAASLHNLVFPYDDLDKMIRKDREPPSKAVFWAIFGAIYLCFGMPEV 275 Query: 136 GT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDP 187 F R ++ + ++ P H Sbjct: 276 YRVLFEAFGMDPDDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPR 335 Query: 188 RFTVVV 193 F V Sbjct: 336 LFRACV 341 Score = 38.0 bits (86), Expect = 0.91, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 5/87 (5%) Query: 18 ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + YERLE++G +I L+++ L A L+ Sbjct: 382 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDLVMAERLLMKHLDAPGRWLA 441 Query: 73 VRFNSLVSAETCSQVARELDLASFIRV 99 + + + C + R+ L +I Sbjct: 442 EKHRRTLMNKYCGRYLRDKHLQHYIIY 468 >gi|241999660|ref|XP_002434473.1| double-stranded RNA-specific editase B2, putative [Ixodes scapularis] gi|215497803|gb|EEC07297.1| double-stranded RNA-specific editase B2, putative [Ixodes scapularis] Length = 683 Score = 38.4 bits (87), Expect = 0.75, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 + GP H P F V V++ G G SK Sbjct: 83 SQEGPAHQPSFVVSVDVDGQTF-TGRGQSK 111 >gi|194764847|ref|XP_001964539.1| GF22997 [Drosophila ananassae] gi|190614811|gb|EDV30335.1| GF22997 [Drosophila ananassae] Length = 453 Score = 38.4 bits (87), Expect = 0.75, Method: Composition-based stats. Identities = 7/30 (23%), Positives = 13/30 (43%) Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 V ++ A G + + A+Q A + L Sbjct: 220 AEVLVNDQVIATGQGENLKVAKQAAFKQAL 249 >gi|147866536|emb|CAN81584.1| hypothetical protein VITISV_023190 [Vitis vinifera] Length = 1236 Score = 38.4 bits (87), Expect = 0.75, Method: Composition-based stats. Identities = 20/199 (10%), Positives = 51/199 (25%), Gaps = 13/199 (6%) Query: 4 LRYSTLEKRIGYAFANRS---------LLEKALTHSSISHSYQESY--ERLEFLGDRILG 52 +R+ L + ++ LL A+TH+S + + E L L D + Sbjct: 765 IRWILLLQEFNLQIKDKKGVENVVVNHLLRLAITHNSHGLPINDDFPEESLMLLEDALWY 824 Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112 I+ L ++ + + ++ + + + + Sbjct: 825 AHIANYLGIEEVPSEWKAQDRKHFFAKIHAYYWEELFFFKYCAYQIIKKCVPEQEQQGIL 884 Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT--ELQEWAHAKFG 170 + + A + + F + + + + +L Sbjct: 885 THCHESACEDHFAFHKTTMKVLQSGFSWPSLFKDSHTMCRSCDRCQRLGKLTRRNQMPMN 944 Query: 171 VTPEYKVTFRSGPDHDPRF 189 + G D F Sbjct: 945 PILIVDLFDVWGIDFIGPF 963 >gi|195435714|ref|XP_002065824.1| GK18621 [Drosophila willistoni] gi|194161909|gb|EDW76810.1| GK18621 [Drosophila willistoni] Length = 297 Score = 38.4 bits (87), Expect = 0.75, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 R+ EL ++ ++ +P +++ +S + P+F ++ + G+ K+ A Sbjct: 90 DPNRNMFKELWDFCNSHDMPSPIFEMVEKSRNPNAPKFVACCTLASIKR-YGISDKKKEA 148 Query: 212 EQVAAAEVL 220 Q AA+ +L Sbjct: 149 HQRAASAIL 157 >gi|221120974|ref|XP_002166223.1| PREDICTED: similar to adenosine deaminase [Hydra magnipapillata] Length = 858 Score = 38.4 bits (87), Expect = 0.76, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 22/90 (24%), Gaps = 2/90 (2%) Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 E + K+ + D + G D Sbjct: 123 YSFSDEREISQKMVNQKEFFMDRQAVDEDKVRCHPAMMLTETFPKLVINYVEGLGK-GDH 181 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217 +F EI+G G SK+ A+ A Sbjct: 182 QFKAAAEINGN-MFYGEGRSKKIAKINLAK 210 >gi|325115118|emb|CBZ50674.1| putative ATP-dependent helicase [Neospora caninum Liverpool] Length = 1394 Score = 38.4 bits (87), Expect = 0.77, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 4/43 (9%) Query: 186 DPRFTVVV--EISG--LAPAQGMDCSKRAAEQVAAAEVLKREG 224 + F + I+G +G+ SK+ A++ A +L + G Sbjct: 198 NQFFKASLSWTIAGNRKIQTEGIGRSKKDAKKEAVKALLGQLG 240 >gi|19113607|ref|NP_596815.1| mitochondrial ribosomal protein subunit L15 [Schizosaccharomyces pombe 972h-] gi|74626357|sp|Q9Y7Z7|RM15_SCHPO RecName: Full=60S ribosomal protein L15, mitochondrial; Flags: Precursor gi|5579046|emb|CAB51333.1| mitochondrial ribosomal protein subunit L15 [Schizosaccharomyces pombe] Length = 210 Score = 38.4 bits (87), Expect = 0.77, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 2/125 (1%) Query: 17 FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76 +++SL E+ +TH S H + E +G+ ++ + + + + N Sbjct: 65 ISDKSLREQIVTHKSYKHGLKRYNEPFVSVGNAVIDVCLLNHYLESGNFSTIPSYKDLVN 124 Query: 77 --SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 S ++ I S I + +V L+A +Y G Sbjct: 125 LRSPARLAEVAKKWNPETATQCILPLKGPNSPSSSSFEKIYSSIVSGLVAVVYFQKGGVE 184 Query: 135 AGTFV 139 A F Sbjct: 185 AMNFC 189 >gi|83771830|dbj|BAE61960.1| unnamed protein product [Aspergillus oryzae] Length = 129 Score = 38.4 bits (87), Expect = 0.77, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 4/63 (6%) Query: 5 RYSTLEKRIGYAFANRSLLEKAL-THSSIS---HSYQESYERLEFLGDRILGLLISTLLF 60 R +E+ I Y F N + + +AL T S++ + ++ L LGD L L+++ + Sbjct: 25 RIQLIEQIINYTFTNPATIHEALRTPGSMAILTPHRLDGHKDLAQLGDAALRLVLAKDGY 84 Query: 61 NHF 63 Sbjct: 85 QAH 87 >gi|326506566|dbj|BAJ91324.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 493 Score = 38.4 bits (87), Expect = 0.79, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 5/87 (5%) Query: 18 ANRSL---LEKALTHSS-ISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + + +ERLE++G +I L+++ L A LS Sbjct: 384 RNIELGLGLQLCFMHPSKYKFEHPRFCFERLEYVGQKIQDLVLAERLLMKHLDAPGRWLS 443 Query: 73 VRFNSLVSAETCSQVARELDLASFIRV 99 + L+ + C + R L +I Sbjct: 444 EKHRRLLMNKYCGRYLRGKHLHHYIIY 470 Score = 36.1 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 52/186 (27%), Gaps = 14/186 (7%) Query: 22 LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 LL H + + + + RL FLG +L L + G + R Sbjct: 158 LLYLVFQHLDPSSERTRTRHVRNGHSRLWFLGQFVLELAFCEFFLQRYPRESPGPMRERV 217 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 +L+ + + + L + + DL K + V +L A+YL G+ Sbjct: 218 FALIGKKMLPKWIKAASLHNLVFPYDDLDKMLRKDREPPTKAVFWALFGAIYLCFGMPEV 277 Query: 136 GT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDP 187 F R ++ + ++ P H Sbjct: 278 YRVLFEAFGMDPEEESCQPKLRRQLEDVDYVSVEFEKRQLAWQDVAAYRPPADALFAHPR 337 Query: 188 RFTVVV 193 F V Sbjct: 338 LFRACV 343 >gi|326495340|dbj|BAJ85766.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326503490|dbj|BAJ86251.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326520661|dbj|BAJ92694.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 527 Score = 38.4 bits (87), Expect = 0.79, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 5/87 (5%) Query: 18 ANRSL---LEKALTHSS-ISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + + +ERLE++G +I L+++ L A LS Sbjct: 384 RNIELGLGLQLCFMHPSKYKFEHPRFCFERLEYVGQKIQDLVLAERLLMKHLDAPGRWLS 443 Query: 73 VRFNSLVSAETCSQVARELDLASFIRV 99 + L+ + C + R L +I Sbjct: 444 EKHRRLLMNKYCGRYLRGKHLHHYIIY 470 Score = 36.1 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 52/186 (27%), Gaps = 14/186 (7%) Query: 22 LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 LL H + + + + RL FLG +L L + G + R Sbjct: 158 LLYLVFQHLDPSSERTRTRHVRNGHSRLWFLGQFVLELAFCEFFLQRYPRESPGPMRERV 217 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 +L+ + + + L + + DL K + V +L A+YL G+ Sbjct: 218 FALIGKKMLPKWIKAASLHNLVFPYDDLDKMLRKDREPPTKAVFWALFGAIYLCFGMPEV 277 Query: 136 GT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDP 187 F R ++ + ++ P H Sbjct: 278 YRVLFEAFGMDPEEESCQPKLRRQLEDVDYVSVEFEKRQLAWQDVAAYRPPADALFAHPR 337 Query: 188 RFTVVV 193 F V Sbjct: 338 LFRACV 343 >gi|145550957|ref|XP_001461156.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|74830689|emb|CAI39096.1| Dicer-like ribonuclease with mutated helicase and Rnase III domains [Paramecium tetraurelia] gi|124428989|emb|CAK93783.1| unnamed protein product [Paramecium tetraurelia] Length = 1566 Score = 38.4 bits (87), Expect = 0.79, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 14/27 (51%) Query: 6 YSTLEKRIGYAFANRSLLEKALTHSSI 32 Y E+ I Y F + LL +ALT S Sbjct: 1265 YQKFEEIIKYQFNSFELLFQALTDVSF 1291 >gi|168054513|ref|XP_001779675.1| predicted protein [Physcomitrella patens subsp. patens] gi|162668873|gb|EDQ55471.1| predicted protein [Physcomitrella patens subsp. patens] Length = 461 Score = 38.4 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 6/175 (3%) Query: 21 SLLEKALTHS-SISHSY----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 +LL A H S+ ++++ RL FLG+ +L L ++ L+ F G L R Sbjct: 93 TLLYLAFQHPDSVRARKAPYVRKAHSRLAFLGEYVLELAMAELVLQMFPRELVGSLRERV 152 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEV 134 L + + + + I D + S V +++AA+YL G EV Sbjct: 153 FGLTNKKVLPDWLKNASMDRLIYPDGDWGEIKWSDKLKPCKSVFHAIVAAIYLTLGMPEV 212 Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 + + + R ++ + G ++ P + F Sbjct: 213 YRVLFEAFGFDVDAPQFQPRPRVCEDVDHLSPELDGERLSWQDIAYYQPPEEALF 267 Score = 38.0 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 5/92 (5%) Query: 18 ANRSL---LEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + + ERLE+LG ++ ++++ + A + Sbjct: 318 RNIELQLGLQLCFLHPSAHKAEHPRFCNERLEYLGSKVQDVIMAEKILMKHLDAPGAWIE 377 Query: 73 VRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 R L+ C R L L I S + R Sbjct: 378 ERHRRLLLNRLCGLYLRNLKLHHHIVYSDERR 409 >gi|145354761|ref|XP_001421645.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581883|gb|ABO99938.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 389 Score = 38.4 bits (87), Expect = 0.85, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFR--SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213 + + KV SG F + +++ A+G + +AA+ Sbjct: 298 HPVSATHALMDILHAPKSKRKVVEWVGSGSKGGGLFEIELKLGSSVRARGEGRTVKAAKF 357 Query: 214 VAAA---EVLK 221 AA LK Sbjct: 358 EAARGAFAALK 368 >gi|322712474|gb|EFZ04047.1| 60S ribosomal protein L3 [Metarhizium anisopliae ARSEF 23] Length = 392 Score = 38.4 bits (87), Expect = 0.85, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 25/71 (35%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +AL S + + L FLG I+ + L + L + E Sbjct: 98 LARALITPSADANGSFNNSNLAFLGSTIINYHVLEYLVCKWPRLPMAILYEALRAFSGQE 157 Query: 83 TCSQVARELDL 93 + QVAR + Sbjct: 158 SLQQVARRWGV 168 Score = 36.8 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 3/110 (2%) Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVT 172 A V++++ ++Y G E A +FV + R + + EL + Sbjct: 247 FASFVQAVVGSIYAHCGREAAKSFVTSHILSRQFDPSELFQFQLPTRELAMLCAREGFEA 306 Query: 173 PEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P ++ +G P F V + +G S A + A+ VLK Sbjct: 307 PVARLESETGRLSKTPVFVVGIYSGKEKLGEGAGPSLDIARRKASMNVLK 356 >gi|238489357|ref|XP_002375916.1| 60S ribosomal protein L3 [Aspergillus flavus NRRL3357] gi|220698304|gb|EED54644.1| 60S ribosomal protein L3 [Aspergillus flavus NRRL3357] Length = 403 Score = 38.4 bits (87), Expect = 0.85, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 3/117 (2%) Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWA 165 A V +++ A+YL G A F ++++ R L +L Sbjct: 251 GVTAEHANATFVRAVMGAIYLHAGRPAAKRFFEQHFLSRHLNISDLFNFSQPARDLSRLC 310 Query: 166 HAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + P K+ +G P F V + +G S A AA LK Sbjct: 311 ARENFEPPVAKIISETGRKSRHPVFVVGIFSGQDKLGEGAGASLLEARSRAAVAALK 367 >gi|169763446|ref|XP_001727623.1| 60S ribosomal protein L3 [Aspergillus oryzae RIB40] gi|83770651|dbj|BAE60784.1| unnamed protein product [Aspergillus oryzae] Length = 403 Score = 38.4 bits (87), Expect = 0.85, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 3/117 (2%) Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWA 165 A V +++ A+YL G A F ++++ R L +L Sbjct: 251 GVTAEHANATFVRAVMGAIYLHAGRPAAKRFFEQHFLSRHLNISDLFNFSQPARDLSRLC 310 Query: 166 HAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + P K+ +G P F V + +G S A AA LK Sbjct: 311 ARENFEPPVAKIISETGRKSRHPVFVVGIFSGQDKLGEGAGASLLEARSRAAVAALK 367 >gi|170056263|ref|XP_001863951.1| ribonuclease iii [Culex quinquefasciatus] gi|167876020|gb|EDS39403.1| ribonuclease iii [Culex quinquefasciatus] Length = 239 Score = 38.4 bits (87), Expect = 0.86, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 +GP + +T+ V A S + E AA + L+ Sbjct: 135 IECNGPTNTRVYTMAVYF--RLLACCNGHSMQQVEINAAKQALEN 177 >gi|322695413|gb|EFY87222.1| 60S ribosomal protein L3 [Metarhizium acridum CQMa 102] Length = 392 Score = 38.4 bits (87), Expect = 0.88, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 25/71 (35%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L +AL S + + L FLG I+ + L + L + E Sbjct: 98 LARALITPSADANGSFNNANLAFLGSTIINYHVLEYLVCKWPRLPMAILYEALRAFSGQE 157 Query: 83 TCSQVARELDL 93 + QVAR + Sbjct: 158 SLQQVARRWGV 168 Score = 38.0 bits (86), Expect = 0.89, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 3/110 (2%) Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVT 172 A V++++ ++Y G E A +FV + R + EL + + Sbjct: 247 FASFVQAVVGSIYAHCGREAAKSFVTSHILSRHFDPSVLFQFQLPTRELAMLCAREGFES 306 Query: 173 PEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 P ++ +G P + V + +G S A + A+ LK Sbjct: 307 PVARLESETGRLSRTPVYVVGIYSGKEKLGEGAGPSLDIARRKASMNALK 356 >gi|256074989|ref|XP_002573804.1| tar rna binding protein (trbp) [Schistosoma mansoni] gi|238658992|emb|CAZ30036.1| tar rna binding protein (trbp), putative [Schistosoma mansoni] Length = 356 Score = 38.0 bits (86), Expect = 0.89, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 TP Y++ GP H+P + + +G A SK+ A+ A+ +L + Sbjct: 24 TPIYELVSNEGPVHEPLYVFLCT-AGPFSATSKGASKKRAKHQASYLILLKM 74 >gi|21668316|emb|CAC84469.1| putative ribonuclease III [Spodoptera frugiperda ascovirus 1a] Length = 348 Score = 38.0 bits (86), Expect = 0.91, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 7/88 (7%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS-----TLLFNHFDSAKEGELSV 73 N + ALT S + +YE E++GD ++ I H G ++ Sbjct: 172 NMDKFQAALT--SKEYDNIFNYEYFEYIGDSVINRFIIDYIRENYTDIHNIQQDIGVMTK 229 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSS 101 + V S+ + L FIR Sbjct: 230 LRSIYVGKWNLSKCCVSIGLNKFIRCQY 257 >gi|317030485|ref|XP_001392667.2| 60S ribosomal protein L3 [Aspergillus niger CBS 513.88] Length = 406 Score = 38.0 bits (86), Expect = 0.93, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 1/70 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +L + P ++ +G P F V + +G S A Sbjct: 301 NFSQPARDLARLCARENFEQPVARIISETGRKSRHPVFVVGIYSGQDKLGEGAGASLLEA 360 Query: 212 EQVAAAEVLK 221 AA LK Sbjct: 361 RSRAAVAALK 370 >gi|290760516|gb|ADD59812.1| dsRNA-specific ribonuclease RNase III [Paulownia witches'-broom phytoplasma] Length = 112 Score = 38.0 bits (86), Expect = 0.94, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 14/35 (40%) Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208 +YK+ GP H +F V + G +K Sbjct: 45 QYKIVQEQGPAHSKKFVAEVYLEKNLLGTGEGSTK 79 >gi|225714066|gb|ACO12879.1| 39S ribosomal protein L44, mitochondrial precursor [Lepeophtheirus salmonis] Length = 328 Score = 38.0 bits (86), Expect = 0.96, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 73/233 (31%), Gaps = 15/233 (6%) Query: 4 LRYSTLEKRIGYAFANRSLLEKALTHSSI------------SHSYQESYERLEFLGDRIL 51 + L R+ +F N L+ +AL ++ + SY RL LG ++ Sbjct: 74 VELFALGARLRESF-NFELVREALRDPTLYLVSMKEKIDLSLKDSEASYTRLVELGREVI 132 Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 ++ L F + L+S + A + L + S + + Sbjct: 133 SASLNDFLTKTFPKVPSDGIIAFQEYLMSPYVLASKALHIGLKDLVV-SQEYPPSKNTLS 191 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171 + A + + ++ V L ++ L + Sbjct: 192 NAFCALIGAHSESGNNRRQSYQLVVDLVATQIIGMDLHDVWKIQNPMDYLSKILAENNMK 251 Query: 172 TPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PE ++ + SG + + V + + + S A +AA + L+R Sbjct: 252 EPEPRLQWASGKNTLLASYHVGIYSNQSLIGECTGESIETARDMAALDTLRRM 304 >gi|158293152|ref|XP_314491.4| AGAP010518-PA [Anopheles gambiae str. PEST] gi|157016821|gb|EAA09936.5| AGAP010518-PA [Anopheles gambiae str. PEST] Length = 849 Score = 38.0 bits (86), Expect = 0.98, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 41/177 (23%), Gaps = 25/177 (14%) Query: 45 FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 FLG + L L + ++ + + + + + Sbjct: 662 FLGSTGVNCLSQRELAEGYQPWATRDMMKQSAPVTG-----------GMGMHLLQKMGWQ 710 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-------------- 150 + L L G E Sbjct: 711 PGEGLGKEKNGSLQPLLLDVKLDKRGLGEGDNKQRSHQPYPMQAPFGRRDARSRFVNLKI 770 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 + + L E+A P Y++ SGP H F V ++GL + + Sbjct: 771 NTDGKHPVSILCEYATKHKWNAPMYELVHESGPGHAKNFIFKVLVNGLEYQPAIANN 827 >gi|18043980|gb|AAH19727.1| Mrpl44 protein [Mus musculus] Length = 115 Score = 38.0 bits (86), Expect = 0.98, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 16/37 (43%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P + V + A+G + AE+ AA L++ Sbjct: 50 PLYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 86 >gi|260950215|ref|XP_002619404.1| hypothetical protein CLUG_00563 [Clavispora lusitaniae ATCC 42720] gi|238846976|gb|EEQ36440.1| hypothetical protein CLUG_00563 [Clavispora lusitaniae ATCC 42720] Length = 579 Score = 38.0 bits (86), Expect = 0.99, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 18/215 (8%) Query: 23 LEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 L+ LT S SH +L G ++ + +L F +A E +L Sbjct: 200 LKLVLTDKSFRQPGDFLEASHFSNSHNRKLALHGSALVDCALISLANTAFPTAHEDDLQH 259 Query: 74 RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 L + +++A +L+ + + V M +Q + Sbjct: 260 LRFRLTAPHVVARLAYCYNLSEAVMMHISQELPVEDKMRILQTVFYAYVGGMARHGYTFA 319 Query: 134 VAGTFVDKYWKQ--------RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185 ++ K ++ + L A+ F + + Sbjct: 320 EIQKWLSKLYQPLFAKLPDAQVKNLHAVAYAEFQFLVTRANNYFEHPTKKLRYDFEQENE 379 Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 DP + + LA A G + AA+Q AA L Sbjct: 380 DPL-VFRLRVGELALASGSGDTALAAKQRAAYNTL 413 >gi|215768941|dbj|BAH01170.1| unnamed protein product [Oryza sativa Japonica Group] Length = 180 Score = 38.0 bits (86), Expect = 0.99, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 35/123 (28%), Gaps = 7/123 (5%) Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170 M + + + + VA V++ +G + + Sbjct: 54 MDMVMEEAAALSLGVSASKEPVHVATGRVEQSNCGAKHANGTTDNEPARLRLHKICSATH 113 Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-------DCSKRAAEQVAAAEVLKRE 223 GP H FT V I + + SK+AA++ AA L Sbjct: 114 WKEPSYDFEEQGPSHLKLFTCKVTIHVDTFTTTIVECISEPNRSKKAAQEHAAQGALWYL 173 Query: 224 GIW 226 I+ Sbjct: 174 KIF 176 >gi|71654841|ref|XP_816032.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70881133|gb|EAN94181.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 2180 Score = 38.0 bits (86), Expect = 0.99, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 35/128 (27%), Gaps = 6/128 (4%) Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 R + + + + G+ + +++ R Sbjct: 29 RWIHAQEINPGEISLIEAVEESNASVGNASHGSGVFDGSHELPQHFFDAKHVDTFSRARV 88 Query: 158 KTELQEWAHAKFGVTPEYKVT-FRSGPDHDPRFTVVVEIS-----GLAPAQGMDCSKRAA 211 ++ ++ + + G D + V + G A GM C+ + A Sbjct: 89 VNFIKRFSQGAVTGSNDVFQVQEVKGNDGSQLYHCRVRLPFQSQTGEVWAHGMACNGKDA 148 Query: 212 EQVAAAEV 219 E +AA Sbjct: 149 EMLAAMHA 156 >gi|322822628|gb|EFZ28624.1| hypothetical protein TCSYLVIO_5148 [Trypanosoma cruzi] Length = 1905 Score = 38.0 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 35/128 (27%), Gaps = 6/128 (4%) Query: 98 RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157 R + + + + G+ + +++ R Sbjct: 29 RWIHAQEINPGEISLIEAVEESHASVGNASRGSGVFDGSHELPQHFFDAKHVDTFSRARV 88 Query: 158 KTELQEWAHAKFGVTPEYKVT-FRSGPDHDPRFTVVVEIS-----GLAPAQGMDCSKRAA 211 ++ ++ + + G D + V + G A GM C+ + A Sbjct: 89 VNFIKRFSQGAVTGSNDVFQVQEVKGNDGSQLYHCRVRLPFQSQTGEVWAHGMACNGKDA 148 Query: 212 EQVAAAEV 219 E +AA Sbjct: 149 EMLAAMHA 156 >gi|255728661|ref|XP_002549256.1| hypothetical protein CTRG_03553 [Candida tropicalis MYA-3404] gi|240133572|gb|EER33128.1| hypothetical protein CTRG_03553 [Candida tropicalis MYA-3404] Length = 221 Score = 38.0 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 2 SALRYSTLEKRIG--YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + ++ +G YA + + + +TH S + + E+L +G ++L L + Sbjct: 53 NEENIVNIKNFLGEKYAIPD-EVALQVITHKSFGNGIKPYNEKLHIMGSKLLSLFFVKHV 111 Query: 60 FN 61 N Sbjct: 112 TN 113 >gi|167526006|ref|XP_001747337.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774172|gb|EDQ87804.1| predicted protein [Monosiga brevicollis MX1] Length = 487 Score = 38.0 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVL 220 + +F V G A ++R AEQ AA L Sbjct: 426 NKKFVAVCHWLGEQYATSAGHGNRRYAEQAAALVAL 461 >gi|170587044|ref|XP_001898289.1| Probable ATP-dependent RNA helicase A [Brugia malayi] gi|158594684|gb|EDP33268.1| Probable ATP-dependent RNA helicase A, putative [Brugia malayi] Length = 1431 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 5/81 (6%) Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV-----EISGLAPAQ 202 G + D K P G D+ F V ++ A+ Sbjct: 188 HIHGGWTADNSKMHLNEFVQKIKQPPLRYDIRSIGTDNSRTFVAEVSLFVPKVRCTFSAR 247 Query: 203 GMDCSKRAAEQVAAAEVLKRE 223 +K+ AE A ++++ Sbjct: 248 AEGSTKKTAEATCALSLMRQL 268 >gi|119946125|ref|YP_943805.1| ADP-ribosylation/crystallin J1 [Psychromonas ingrahamii 37] gi|119864729|gb|ABM04206.1| ADP-ribosylation/Crystallin J1 [Psychromonas ingrahamii 37] Length = 1138 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 37/187 (19%), Gaps = 5/187 (2%) Query: 27 LTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83 LTH +Y RL FLGD I + + + R V Sbjct: 145 LTHCGYIESEPENAFTYGRLVFLGDLIDNKPDWGGDHLSLLNHIKDLVDKRLAYCVLGNH 204 Query: 84 CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143 D K + + V + IE T Sbjct: 205 EFNAIGWSLKKPDGSYCRDRNKSGNRRQHQLFLEQVGEDSRQYHQW--IEWFKTLPLFMD 262 Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203 + P+H+ + G A Sbjct: 263 FADVRVIHACWHQESIDRIRPYLNDDNSLKTEYWYDAFDPEHELYQFCETLLKGPEIALP 322 Query: 204 MDCSKRA 210 CS + Sbjct: 323 EGCSFKD 329 >gi|320167293|gb|EFW44192.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 326 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 68/201 (33%), Gaps = 12/201 (5%) Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82 L++AL + +Q +R+ LG L + +F F L S++ A Sbjct: 104 LKRALM---SNDKWQSPSQRMSALGQGYFHALFAEHVFQRFPRLPGPALQSITESVMDAP 160 Query: 83 TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142 + SQ AR L F + LR S V+ +++ + G ++ K Sbjct: 161 SISQYARAFGLHQFAQSDLLLR--------SSFFAVIAAIVEVKGIAGVRQIVDDVAQKE 212 Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPA 201 + + + LQ +K+ +G P F V A Sbjct: 213 FAAARPADSILITNPQRLLQSCLEDANQEPLTFKLHKEAGRTTATPTFVVGAYSGSQLLA 272 Query: 202 QGMDCSKRAAEQVAAAEVLKR 222 +G S A++ A+ L + Sbjct: 273 EGTAASMSKAKREASRNSLTK 293 >gi|296806447|ref|XP_002844033.1| conserved hypothetical protein [Arthroderma otae CBS 113480] gi|238845335|gb|EEQ34997.1| conserved hypothetical protein [Arthroderma otae CBS 113480] Length = 156 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 3 ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62 +E + Y+F ++ L+ +AL+ S +Y + L +GD + L I + Sbjct: 13 REDSEAVEGILDYSFKDKCLVLQALSLP-GSSAYSTGNKGLAQVGDAAVRLHIISEGHQR 71 >gi|290974920|ref|XP_002670192.1| predicted protein [Naegleria gruberi] gi|284083748|gb|EFC37448.1| predicted protein [Naegleria gruberi] Length = 643 Score = 38.0 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 20/168 (11%), Positives = 40/168 (23%) Query: 44 EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103 E L I + +L + +K ++ L + Sbjct: 329 EDLSRIITDMTFLFILCGNDYISKPRRFDIKLFMDRYIAHQKYSENREYLIHYDLKQPSE 388 Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163 K F++S+ +D ++ D + + + Sbjct: 389 MKINVKFLSSLYSDYIKDFKQGENEDTETSNSKKKAEMENGFPKINIDNIPTKEAMVFLI 448 Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 + + P F VVV+I SK+ A Sbjct: 449 TLLNLGKREFLCEEYEIIDAEPKPHFQVVVKIGESYITTARGKSKKDA 496 >gi|328724252|ref|XP_003248081.1| PREDICTED: dosage compensation regulator-like [Acyrthosiphon pisum] Length = 190 Score = 38.0 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 3/68 (4%) Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAE 212 + K L EW ++G + RF V + G G +K+ A+ Sbjct: 1 MANPKAFLHEWCAKNNLEPQFE--IKQAGSKFNLRFICEVTVGGHNYVGVGNSTNKKDAQ 58 Query: 213 QVAAAEVL 220 A+ + L Sbjct: 59 GNASKDYL 66 >gi|108863923|gb|ABG22336.1| Double-stranded RNA binding motif family protein, expressed [Oryza sativa Japonica Group] Length = 369 Score = 38.0 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 12/27 (44%) Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVL 220 +I G+ +K+ AE AA L Sbjct: 50 KIGGIQYIGAAARTKKDAEIKAARTAL 76 >gi|260806759|ref|XP_002598251.1| hypothetical protein BRAFLDRAFT_69582 [Branchiostoma floridae] gi|229283523|gb|EEN54263.1| hypothetical protein BRAFLDRAFT_69582 [Branchiostoma floridae] Length = 758 Score = 37.6 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 14/37 (37%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P V I + A G S + A +AA L + Sbjct: 536 PMHQCFVSIKEMIVADGWSFSAKEARHLAAEAALSKL 572 >gi|121701443|ref|XP_001268986.1| 60S ribosomal protein L3 [Aspergillus clavatus NRRL 1] gi|119397129|gb|EAW07560.1| 60S ribosomal protein L3 [Aspergillus clavatus NRRL 1] Length = 406 Score = 37.6 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 1/70 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +L + P K+ +G P F V + +G S A Sbjct: 301 NFSQPARDLTRLCARENFEPPVAKIISETGRKSRHPVFVVGIFSGQDKLGEGAGASLLEA 360 Query: 212 EQVAAAEVLK 221 AA LK Sbjct: 361 RSRAAVAALK 370 >gi|224111576|ref|XP_002315906.1| predicted protein [Populus trichocarpa] gi|222864946|gb|EEF02077.1| predicted protein [Populus trichocarpa] Length = 1053 Score = 37.6 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 21/36 (58%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + +F VE +G+ +K++AE+ AAAE L+ Sbjct: 990 NNQFRATVEFNGMQIMGQPCNNKKSAEKDAAAEALQ 1025 >gi|302693867|ref|XP_003036612.1| hypothetical protein SCHCODRAFT_30567 [Schizophyllum commune H4-8] gi|300110309|gb|EFJ01710.1| hypothetical protein SCHCODRAFT_30567 [Schizophyllum commune H4-8] Length = 216 Score = 37.6 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 61/158 (38%), Gaps = 12/158 (7%) Query: 16 AFANRSLLEKALTHSSI-----------SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 + + + TH S+ + E+ E LGD +LGL+++T + + Sbjct: 7 HVHDERIENQIFTHRSLFGRPTHVFEDRADDLAPDNEKFEHLGDTVLGLVVTTQIQQMYP 66 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124 + G + +V + + ++ + L + ++QAD+ E+ + Sbjct: 67 GLRVGPSTKIRALVVGNQNLAAISVKYKLPE-RLKVHAAQVVSLKASVNVQADLFEAYVG 125 Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162 L+L G+ V ++ ++ + + + R T + Sbjct: 126 GLFLHRGLSVVEAWLKPLFRPYIICAYEQVRQHHTVTR 163 >gi|256600044|gb|ACV04762.1| Dicer [Patiria miniata] Length = 663 Score = 37.6 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 52/167 (31%), Gaps = 16/167 (9%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 + + ++LT S + S + ERLE LGD L ++ L+ + EG+LS + V Sbjct: 358 PTTILQSLTMS--NSSDGFNLERLEMLGDSFLKQAVTIYLYCTYPRRHEGKLSYMRSKQV 415 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139 S F RKD+ M D + +AA + Sbjct: 416 SN--------------FNLYRLGKRKDIGRKMQVALFDPAINWLAACFFVKENVHPDEQR 461 Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186 Q+ + P V + PD D Sbjct: 462 SYQSYQKEGSDVSSDDGDFAIDTWDPSSVDMWDPNMVVEEETAPDID 508 >gi|28574978|ref|NP_647927.3| CG12493 [Drosophila melanogaster] gi|19527791|gb|AAL90010.1| AT07585p [Drosophila melanogaster] gi|28380451|gb|AAF47937.2| CG12493 [Drosophila melanogaster] gi|220949632|gb|ACL87359.1| CG12493-PA [synthetic construct] gi|220958430|gb|ACL91758.1| CG12493-PA [synthetic construct] Length = 296 Score = 37.6 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 15/147 (10%), Positives = 36/147 (24%), Gaps = 3/147 (2%) Query: 79 VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138 C + RE+ + ++ +I + + L + Sbjct: 143 AGNAACEKALREILTTKMKALLAEPENSSGGDEDNILEKMTSYAVYKLAEKWNSDAIDVA 202 Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP--DHDPRFTVVVEIS 196 + S + K G ++ F++ V + Sbjct: 203 ALYNDVKNKKTSSSVGQLPKLWKNMHPCMVLMQMRPQTTFKFLGSSGENRKVFSMGVSVD 262 Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKRE 223 + +K+ A + AA V + Sbjct: 263 NCEF-KADGPTKKDARRKVAALVCNKL 288 >gi|169158555|emb|CAQ13987.1| integrin, beta 5 [Danio rerio] gi|169158642|emb|CAQ15345.1| integrin, beta 5 [Danio rerio] Length = 807 Score = 37.6 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 17/185 (9%), Positives = 31/185 (16%), Gaps = 16/185 (8%) Query: 28 THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL------VSA 81 T S + +RLE D + + + Sbjct: 443 TRKSFTIRPVGFKDRLEVSVDYRCDCRCTYHTKPNSSRCNSAGTYNCGLCRCEPGYLGAR 502 Query: 82 ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141 C + + S R + + S + E + Sbjct: 503 CECQEGEVDHQHLSACREAEGKQVCSGRGECSCNQCLCYESEFGKIYGTFCECDDFSCAR 562 Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 + K + HA + T T Sbjct: 563 HKGILCSGKIKSGHGECHCGECKCHAGYIGDNCNCSTE----------TASCVSDDGKIC 612 Query: 202 QGMDC 206 G Sbjct: 613 SGRGS 617 >gi|238881365|gb|EEQ45003.1| conserved hypothetical protein [Candida albicans WO-1] Length = 673 Score = 37.6 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 17/35 (48%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + V+V G+ G D +K+ A Q AA L Sbjct: 626 EKVYHVLVSAKGIYLGGGYDLNKKLAAQKAAMCAL 660 >gi|68477412|ref|XP_717177.1| possible dsRNA binding protein fragment [Candida albicans SC5314] gi|46438879|gb|EAK98203.1| possible dsRNA binding protein fragment [Candida albicans SC5314] Length = 389 Score = 37.6 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 17/35 (48%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + V+V G+ G D +K+ A Q AA L Sbjct: 342 EKVYHVLVSAKGIYLGGGYDLNKKLAAQKAAMCAL 376 >gi|68477257|ref|XP_717255.1| possible dsRNA binding protein [Candida albicans SC5314] gi|46438959|gb|EAK98282.1| possible dsRNA binding protein [Candida albicans SC5314] Length = 673 Score = 37.6 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 17/35 (48%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 + + V+V G+ G D +K+ A Q AA L Sbjct: 626 EKVYHVLVSAKGIYLGGGYDLNKKLAAQKAAMCAL 660 >gi|47226202|emb|CAG08349.1| unnamed protein product [Tetraodon nigroviridis] Length = 237 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%) Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 PDH R+ V + G A G+ K+ + +AA E L Sbjct: 20 PDH--RWRCEVYLEGQYVAAGIGP-KKLVKHIAANEALATL 57 >gi|17555186|ref|NP_499265.1| RNAi DEfective family member (rde-4) [Caenorhabditis elegans] gi|458490|emb|CAA83012.1| C. elegans protein T20G5.11, confirmed by transcript evidence [Caenorhabditis elegans] gi|21912830|gb|AAL61544.1| RNA interference promoting factor [Caenorhabditis elegans] Length = 385 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 F + + ++ + +G SK+AA Q AA E L++ Sbjct: 71 FEMTLILNEITV-KGQATSKKAARQKAAVEYLRK 103 >gi|332017832|gb|EGI58492.1| NF-kappa-B-repressing factor [Acromyrmex echinatior] Length = 379 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 8/82 (9%), Positives = 20/82 (24%) Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201 ++ + T + + + + + Sbjct: 106 NFQNHPYEDIVLWEKPGTNDNVLNILEMSAGVSGIAMRWKYSKIEEGWECSIIFDSQKLS 165 Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223 D +K+ A Q AA L++ Sbjct: 166 CSTDINKKVARQKAAIIALEKL 187 >gi|326913278|ref|XP_003202966.1| PREDICTED: hypothetical protein LOC100542052 [Meleagris gallopavo] Length = 847 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 20/46 (43%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E + + PE+ + SGPDH F V ++G Sbjct: 758 KHPVSALMEICNKRRWSPPEFVLVDDSGPDHRKHFIFKVRVNGNEY 803 >gi|296425163|ref|XP_002842112.1| hypothetical protein [Tuber melanosporum Mel28] gi|295638371|emb|CAZ86303.1| unnamed protein product [Tuber melanosporum] Length = 302 Score = 37.6 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 20/49 (40%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73 +A+TH S H +Q E+L G R+ L S L N + Sbjct: 135 QAVTHKSFDHGHQPFNEKLAIYGKRVCWLHASLHLLNGPPIEDKRVYEP 183 >gi|195447464|ref|XP_002071225.1| GK25242 [Drosophila willistoni] gi|194167310|gb|EDW82211.1| GK25242 [Drosophila willistoni] Length = 412 Score = 37.2 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 D FT +V ++ +G SK AA+ +A + L+ Sbjct: 167 DGGFTAIVTVNSNQY-EGKGQSKMAAKNLACEKALR 201 >gi|50251545|dbj|BAD28919.1| hypothetical protein [Oryza sativa Japonica Group] gi|50253009|dbj|BAD29259.1| hypothetical protein [Oryza sativa Japonica Group] gi|125605702|gb|EAZ44738.1| hypothetical protein OsJ_29369 [Oryza sativa Japonica Group] Length = 122 Score = 37.2 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 7/58 (12%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGM-------DCSKRAAEQVAAAEVLKREGIW 226 GP H FT V I + + SK+AA++ AA L I+ Sbjct: 61 YDFEEQGPSHLKLFTCKVTIHVDTFTTTIVECISEPNRSKKAAQEHAAQGALWYLKIF 118 >gi|121711916|ref|XP_001273573.1| RNAse III, putative [Aspergillus clavatus NRRL 1] gi|119401725|gb|EAW12147.1| RNAse III, putative [Aspergillus clavatus NRRL 1] Length = 160 Score = 37.2 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 6/100 (6%) Query: 9 LEKRIGYAFANRSLLEKALTHS-S---ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64 +E+ IGY FA+R++L++AL S + + + L +GD +L + +L + Sbjct: 15 VEETIGYKFADRAVLKEALLAPGSVPLAITTERTGNKDLAQIGDAVLR--LILILDGYIA 72 Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 A +++ + +VS + ++ L I + + Sbjct: 73 KADRAKINDVVSPMVSNPNLAAKGFKVGLEQHILANPSQQ 112 >gi|327357524|gb|EGE86381.1| 60S ribosomal protein L3 [Ajellomyces dermatitidis ATCC 18188] Length = 394 Score = 37.2 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 3/120 (2%) Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQ 162 A+ V +++ A+YL G A F +++ R L R +L Sbjct: 239 HHEGVTPNRACANFVRAIVGAVYLHAGRPAAKQFYKEHFTSRHLDMASLFSFRQPTRDLS 298 Query: 163 EWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 + + P K+ +G + P F V + +G S A AAA LK Sbjct: 299 KLCRREGFEDPVAKILSETGRLSNRPVFNVGIFSGPDKLGEGAGGSLSEARFRAAASALK 358 >gi|218202148|gb|EEC84575.1| hypothetical protein OsI_31370 [Oryza sativa Indica Group] Length = 180 Score = 37.2 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 7/58 (12%) Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGM-------DCSKRAAEQVAAAEVLKREGIW 226 GP H FT V I + SK+AA++ AA L I+ Sbjct: 119 YDFEEQGPSHLKLFTCKVTIHVDTFTTTIVECISEPKRSKKAAQEHAAQGALWYLKIF 176 >gi|308162643|gb|EFO65028.1| Dicer [Giardia lamblia P15] Length = 754 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 48/158 (30%), Gaps = 1/158 (0%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 S+ ++RLE LGD +LG +++ L F +A G L LV ET + + + L Sbjct: 324 FGVSHTNVFQRLELLGDAVLGFVVTARLLCLFPNASVGTLVDLKMELVRNETLNYLVQML 383 Query: 92 DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151 L S + ++V S+ G E + Sbjct: 384 RLPQLA-EFSGTLMAKSKTWADMYEELVGSVFTGPNGIYGCEEFLAKTLISPEHSKPIES 442 Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189 L+ + V + + F Sbjct: 443 ACPDAIIRALERICTGEAEVHEFKSIVDYAYEQGIRVF 480 Score = 37.2 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 10/114 (8%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 LL+ ALT Y++LE LGD L ++ L + EG L+ S Sbjct: 633 IQLLQLALT--------PHVYQKLELLGDAFLKCNLAFHLHVLHPTLTEGTLTRMRQSAE 684 Query: 80 SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + ++ R ++ + + D E+++AA+ L G E Sbjct: 685 TNCVLGKLIRRFPSIVDKVITES--HPKIQSDSKVYGDTFEAILAAVLLACGEE 736 >gi|261330250|emb|CBH13234.1| T. brucei spp.-specific protein [Trypanosoma brucei gambiense DAL972] Length = 1648 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 +++LL+ A T +++YE LEF+GD I+ ++ + F + + + + Sbjct: 715 DKTLLKWATTRE--CEDKEQNYEILEFIGDAIMDFIVVSDSFLLGEPWHKDVNTKLCCNE 772 Query: 79 V 79 V Sbjct: 773 V 773 >gi|170043311|ref|XP_001849336.1| ribonuclease iii [Culex quinquefasciatus] gi|167866692|gb|EDS30075.1| ribonuclease iii [Culex quinquefasciatus] Length = 172 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 14/45 (31%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222 + P + G A S + AE AA + L+ Sbjct: 70 IECNSPTSTRVCMMADYFRGKRLACSNGHSTQQAEMNAAKQALEN 114 >gi|72392539|ref|XP_847070.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62175606|gb|AAX69739.1| hypothetical protein Tb927.8.2370 [Trypanosoma brucei] gi|70803100|gb|AAZ13004.1| hypothetical protein Tb927.8.2370 [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 1648 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 19 NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78 +++LL+ A T +++YE LEF+GD I+ ++ + F + + + + Sbjct: 715 DKTLLKWATTRE--CEDKEQNYEILEFIGDAIMDFIVVSDSFLLGEPWHKDVNTKLCCNE 772 Query: 79 V 79 V Sbjct: 773 V 773 >gi|300863100|ref|NP_001025431.2| 39S ribosomal protein L44, mitochondrial [Danio rerio] Length = 332 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 16/37 (43%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P + V + AQG + AE+ AA L++ Sbjct: 266 PLYFVGLYSDRKLLAQGPGETVLIAEEEAARVALRKL 302 >gi|195435716|ref|XP_002065825.1| GK18578 [Drosophila willistoni] gi|194161910|gb|EDW76811.1| GK18578 [Drosophila willistoni] Length = 248 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 RD EL ++ + P +++ ++ + P+F ++ + G+ K+ A Sbjct: 32 DPNRDMFKELCDFCKSHDMPYPVFEMVEQNRNPNAPKFVACCTLASIKR-YGISDKKKEA 90 Query: 212 EQVAAAEVL 220 Q AA+ +L Sbjct: 91 HQKAASAIL 99 >gi|126631560|gb|AAI33991.1| Zgc:114114 protein [Danio rerio] Length = 332 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 16/37 (43%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P + V + AQG + AE+ AA L++ Sbjct: 266 PLYFVGLYSDRKLLAQGPGETVLIAEEEAARVALRKL 302 >gi|66911375|gb|AAH97173.1| Zgc:114114 [Danio rerio] Length = 155 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 16/37 (43%) Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 P + V + AQG + AE+ AA L++ Sbjct: 89 PLYFVGLYSDRKLLAQGPGETVLIAEEEAARVALRKL 125 >gi|241068889|ref|XP_002408520.1| Nkrf protein, putative [Ixodes scapularis] gi|215492506|gb|EEC02147.1| Nkrf protein, putative [Ixodes scapularis] Length = 379 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 7/28 (25%), Positives = 12/28 (42%) Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAA 216 F V + + SK+ A++ AA Sbjct: 167 FRCTVVLGQCEIGVALGTSKQEAKEAAA 194 >gi|258571013|ref|XP_002544310.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237904580|gb|EEP78981.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 266 Score = 37.2 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 +A+TH S + +RL +LG + L + L + S + Sbjct: 116 QAVTHKSFDQGRRGFNDRLAYLGKHAVALQATLALMQNPASHSQK 160 >gi|255937045|ref|XP_002559549.1| Pc13g11310 [Penicillium chrysogenum Wisconsin 54-1255] gi|211584169|emb|CAP92200.1| Pc13g11310 [Penicillium chrysogenum Wisconsin 54-1255] Length = 372 Score = 37.2 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 73/236 (30%), Gaps = 32/236 (13%) Query: 3 ALRYSTLEKRIGYAFAN--RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + + + L R+ Y + L + L +S + + L G +L + L Sbjct: 88 SAKLAALHARL-YLPSRLPIETLARTLVDTSADPNPNFNNASLATFGHDLLSYYATEHLI 146 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---- 116 + + + V +T + +ARE + +K+ +TS Sbjct: 147 CTYPRLPLTVIFAAMYAYVGPKTLAAMAREWGPTHPTARPYETQKNWRKTVTSKIFYDDE 206 Query: 117 ----------------------DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154 + V +++ A+YL G A F ++++ R L + Sbjct: 207 FGDPLKGAKHSAAGVTTEQASAEFVRAVMGAIYLHAGRAAAKRFFEQHFLSRHLNISELF 266 Query: 155 RD--AKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCS 207 +L + P KV +G P F V + +G S Sbjct: 267 NFQAPARDLTRLCARESFERPVAKVISETGRKSRHPVFVVGIFSGQDKLGEGAGAS 322 >gi|115530718|emb|CAL49304.1| novel protein similar to staufen [Xenopus (Silurana) tropicalis] Length = 351 Score = 37.2 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 ++ ++VT +GP H F V + G +G S Sbjct: 315 NMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGEGEGKS 351 >gi|292611918|ref|XP_002661255.1| PREDICTED: hypothetical protein LOC100332647 [Danio rerio] Length = 923 Score = 37.2 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 11/140 (7%), Positives = 29/140 (20%), Gaps = 3/140 (2%) Query: 50 ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109 I + + ++ + ++ R D + + Sbjct: 290 IYDYTSNCYYTTLNYTREQYNRKQCNSKRHHTTHDHTNTCYYTTQNYSREQYDSKCYHTT 349 Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169 + + + Y + + + K E ++K+ Sbjct: 350 HQYNNEQCHSKCYHTTHYYTREQHNSKCYYTTHNYTLEQYHCKCNYTPLYFTSEQFNSKY 409 Query: 170 GVTPEYKVTFRSGPDHDPRF 189 T P H F Sbjct: 410 YHTTHNHTRE---PYHSKCF 426 >gi|222112971|emb|CAP72541.1| disco-interacting protein [Drosophila virilis] Length = 320 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 D FT +V ++ +G SK AA+ +A + L+ Sbjct: 101 DGGFTAIVTVNTRQY-EGKGQSKMAAKNLACEKALR 135 >gi|222112969|emb|CAP72540.1| disco-interacting protein [Drosophila virilis] Length = 385 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 D FT +V ++ +G SK AA+ +A + L+ Sbjct: 166 DGGFTAIVTVNTRQY-EGKGQSKMAAKNLACEKALR 200 >gi|195392816|ref|XP_002055050.1| GJ19010 [Drosophila virilis] gi|194149560|gb|EDW65251.1| GJ19010 [Drosophila virilis] Length = 375 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 D FT +V ++ +G SK AA+ +A + L+ Sbjct: 166 DGGFTAIVTVNTRQY-EGKGQSKMAAKNLACEKALR 200 >gi|260946561|ref|XP_002617578.1| hypothetical protein CLUG_03022 [Clavispora lusitaniae ATCC 42720] gi|238849432|gb|EEQ38896.1| hypothetical protein CLUG_03022 [Clavispora lusitaniae ATCC 42720] Length = 211 Score = 36.8 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 20/36 (55%) Query: 24 EKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59 + LTH S ++ + E+L +G ++L L ++ + Sbjct: 66 LQVLTHKSFANGIKPYNEKLSAMGAKVLNLFLAKHV 101 >gi|259488709|tpe|CBF88369.1| TPA: 60S ribosomal protein L3 (AFU_orthologue; AFUA_1G12730) [Aspergillus nidulans FGSC A4] Length = 406 Score = 36.8 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 1/70 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +L + + P K+ +G P F V + +G S A Sbjct: 301 NFSLPTRDLAQLCARENYEPPVAKIISETGRRSRHPVFVVGIFSGQDKLGEGAGASLPEA 360 Query: 212 EQVAAAEVLK 221 AA LK Sbjct: 361 RSRAAVAALK 370 >gi|67517561|ref|XP_658601.1| hypothetical protein AN0997.2 [Aspergillus nidulans FGSC A4] gi|40746409|gb|EAA65565.1| hypothetical protein AN0997.2 [Aspergillus nidulans FGSC A4] Length = 464 Score = 36.8 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 1/70 (1%) Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAA 211 +L + + P K+ +G P F V + +G S A Sbjct: 359 NFSLPTRDLAQLCARENYEPPVAKIISETGRRSRHPVFVVGIFSGQDKLGEGAGASLPEA 418 Query: 212 EQVAAAEVLK 221 AA LK Sbjct: 419 RSRAAVAALK 428 >gi|322495128|emb|CBZ30432.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 2231 Score = 36.8 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%) Query: 182 GPDHDPRFTVVVEISGLAP--AQGMDCSKRAAEQVAAAEVL 220 GP H V + G +G+ +K A++ AA L Sbjct: 995 GPIHHRLTYATVPLPGFDYLLGRGVGPNKVVAKRRAAMHAL 1035 >gi|146099498|ref|XP_001468659.1| hypothetical protein [Leishmania infantum] gi|134073027|emb|CAM71746.1| RNA editing associated helicase 2,putative;with=GeneDB:Tb927.4.1500 [Leishmania infantum JPCM5] Length = 2548 Score = 36.8 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%) Query: 182 GPDHDPRFTVVVEISGLAP--AQGMDCSKRAAEQVAAAEVL 220 GP H V + G +G+ +K A++ AA L Sbjct: 1311 GPIHHRLTYATVPLPGFDYLLGRGVGPNKVVAKRRAAMHAL 1351 >gi|62421274|gb|AAX82394.1| ribonuclease III [Orange-spotted grouper iridovirus] Length = 265 Score = 36.8 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 55/227 (24%), Gaps = 31/227 (13%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE------- 70 N + THS +YE E LGD I+ ++ F Sbjct: 37 KNTQVFHSVFTHS--KAHPVNNYEWYEKLGDAIIASVMPQYYMERFPKLAHDPSAAVART 94 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIA----- 124 +S + S T S +A+++ ++ + D E+++ Sbjct: 95 VSQLAITYQSGTTMSTIAQKMGFLKWVVAHRDGAAPASYKEQQRLLEDTFEAMVGAISIT 154 Query: 125 --------ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + + + Sbjct: 155 MDDATGVKCSGHIACYRFLKYAYGLINMRLDGLIDNKSMLKELIDMHSSVLDSFTFEYTN 214 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H V ++ L SKR E+V A +VL + Sbjct: 215 NVMTLTVAHGKYMVSEVNVNNL--------SKRELEKVLAGKVLAQL 253 >gi|124808931|ref|XP_001348445.1| transcription factor with AP2 domain(s), putative [Plasmodium falciparum 3D7] gi|23497339|gb|AAN36884.1| transcription factor with AP2 domain(s), putative [Plasmodium falciparum 3D7] Length = 1186 Score = 36.8 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 7/154 (4%), Positives = 21/154 (13%), Gaps = 4/154 (2%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 S + + +F G D +F + + Sbjct: 599 RSYCKE---NNCKKDFYGKNTYRNSFCMNNKCMNDICLGENCENQFCMNKCCMNRCCMNK 655 Query: 90 ELDLASFIRVSSDLRKDVCSFMT-SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 + + + D + Sbjct: 656 YCMNKYCMNKYCMDKYCTNKYCMNKYCMDKYCMDKYCTNKYCTNKYCMDKYCTNKYCMDY 715 Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182 + + + +G Sbjct: 716 CCMNNVCMHNNCMLHNYVRNNCSCIKNTMNDMNG 749 >gi|321466229|gb|EFX77226.1| hypothetical protein DAPPUDRAFT_321627 [Daphnia pulex] Length = 199 Score = 36.8 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 1/96 (1%) Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187 +E + + + + E+ K + P Y G Sbjct: 98 CCEWMEHYSPLLIEDMMVVDSQPREDVGYNYCEVLHRLLRKKHLAPIYYCLQVEGTGPSL 157 Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 F + G + R A+ VAA E+L + Sbjct: 158 TFAMSCHHP-KFVTIGEGRTIRMAKNVAAQEMLMKL 192 >gi|312219307|emb|CBX99251.1| hypothetical protein [Leptosphaeria maculans] Length = 425 Score = 36.8 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 1/68 (1%) Query: 2 SALRYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 S+ + L R+ +L + L H S + L LG +LG S L Sbjct: 112 SSTKLHALRSRLSLPPRFPLQVLARTLVHPSADPDPAFNNASLSILGRHLLGYYTSEWLL 171 Query: 61 NHFDSAKE 68 ++ Sbjct: 172 CNYPRLPM 179 >gi|312385229|gb|EFR29781.1| hypothetical protein AND_01016 [Anopheles darlingi] Length = 158 Score = 36.8 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPA--QGMDCSKRAAEQVAAAEVLKREGIWT 227 E H ++ +V++S + A G + R A+ +AA L+ I T Sbjct: 98 QRFEVTYVDIDEKTHSGQYQCLVQLSTMPVAVCHGTGPTVRDAQLLAARNSLEYLKIMT 156 >gi|224159933|ref|XP_002338148.1| predicted protein [Populus trichocarpa] gi|222871054|gb|EEF08185.1| predicted protein [Populus trichocarpa] Length = 83 Score = 36.8 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 181 SGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219 G +H P F V + + + S + A+ AA + Sbjct: 25 EGQEHSPLFYATVTVDATLFSTPLPSSSSKEAQNAAAKQA 64 >gi|195113551|ref|XP_002001331.1| GI22032 [Drosophila mojavensis] gi|193917925|gb|EDW16792.1| GI22032 [Drosophila mojavensis] Length = 449 Score = 36.8 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 14/31 (45%) Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220 T + I+ A G + +AA+ A + L Sbjct: 215 TAEIVINDEVIATGQGDNLKAAKVAAYKQAL 245 >gi|296087343|emb|CBI33717.3| unnamed protein product [Vitis vinifera] Length = 286 Score = 36.8 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 5/87 (5%) Query: 18 ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + YERLE++G +I ++++ L A L Sbjct: 140 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQ 199 Query: 73 VRFNSLVSAETCSQVARELDLASFIRV 99 + L+ + C + R+ L FI Sbjct: 200 EKHRRLLMNKFCGRYLRDKYLHRFIIY 226 >gi|259150175|emb|CAY86978.1| EC1118_1P2_3378p [Saccharomyces cerevisiae EC1118] Length = 1134 Score = 36.8 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 50/195 (25%), Gaps = 9/195 (4%) Query: 18 ANRSLLEKAL--THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 ++L AL T +S S E E + D I G L + + ++ Sbjct: 530 KQPAILNLALIMTGASFLGS-----EYREQISDPICGPLRWIIFSHADFQPPSKTYIIQS 584 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 LV + R L SF+ + S+ + + I+ Sbjct: 585 LLLVEGYEKTSTNRYLHERSFL--HHGTTIQLLRRTPSLGGHPLMVKTGKTSGENSIQDP 642 Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 ++ LK F + + + P D + Sbjct: 643 QEVYKRWIDFEMLKRIAFYAFYMDTTHAVVFGYWNLFINSNQIQLTLPCPDQVWESYDLS 702 Query: 196 SGLAPAQGMDCSKRA 210 G +KR Sbjct: 703 YETLMEHGYGSTKRD 717 >gi|190407966|gb|EDV11231.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] Length = 1134 Score = 36.8 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 50/195 (25%), Gaps = 9/195 (4%) Query: 18 ANRSLLEKAL--THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 ++L AL T +S S E E + D I G L + + ++ Sbjct: 530 KQPAILNLALIMTGASFLGS-----EYREQISDPICGPLRWIIFSHADFQPPSKTYIIQS 584 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 LV + R L SF+ + S+ + + I+ Sbjct: 585 LLLVEGYEKTSTNRYLHERSFL--HHGTTIQLLRRTPSLGGHPLMVKTGKTSGENSIQDP 642 Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 ++ LK F + + + P D + Sbjct: 643 QEVYKRWIDFEMLKRIAFYAFYMDTTHAVVFGYWNLFINSNQIQLTLPCPDQVWESYDLS 702 Query: 196 SGLAPAQGMDCSKRA 210 G +KR Sbjct: 703 YETLMEHGYGSTKRD 717 >gi|6325279|ref|NP_015347.1| hypothetical protein YPR022C [Saccharomyces cerevisiae S288c] gi|74676534|sp|Q12139|YP022_YEAST RecName: Full=Zinc finger protein YPR022C gi|809587|emb|CAA89276.1| unknown [Saccharomyces cerevisiae] gi|1314096|emb|CAA95018.1| unknown [Saccharomyces cerevisiae] gi|285815556|tpg|DAA11448.1| TPA: hypothetical protein YPR022C [Saccharomyces cerevisiae S288c] Length = 1133 Score = 36.8 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 50/195 (25%), Gaps = 9/195 (4%) Query: 18 ANRSLLEKAL--THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 ++L AL T +S S E E + D I G L + + ++ Sbjct: 529 KQPAILNLALIMTGASFLGS-----EYREQISDPICGPLRWIIFSHADFQPPSKTYIIQS 583 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 LV + R L SF+ + S+ + + I+ Sbjct: 584 LLLVEGYEKTSTNRYLHERSFL--HHGTTIQLLRRTPSLGGHPLMVKTGKTSGENSIQDP 641 Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 ++ LK F + + + P D + Sbjct: 642 QEVYKRWIDFEMLKRIAFYAFYMDTTHAVVFGYWNLFINSNQIQLTLPCPDQVWESYDLS 701 Query: 196 SGLAPAQGMDCSKRA 210 G +KR Sbjct: 702 YETLMEHGYGSTKRD 716 >gi|151942811|gb|EDN61157.1| conserved protein [Saccharomyces cerevisiae YJM789] Length = 1133 Score = 36.8 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 50/195 (25%), Gaps = 9/195 (4%) Query: 18 ANRSLLEKAL--THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 ++L AL T +S S E E + D I G L + + ++ Sbjct: 529 KQPAILNLALIMTGASFLGS-----EYREQISDPICGPLRWIIFSHADFQPPSKTYIIQS 583 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 LV + R L SF+ + S+ + + I+ Sbjct: 584 LLLVEGYEKTSTNRYLHERSFL--HHGTTIQLLRRTPSLGGHPLMVKTGKTSGENSIQDP 641 Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 ++ LK F + + + P D + Sbjct: 642 QEVYKRWIDFEMLKRIAFYAFYMDTTHAVVFGYWNLFINSNQIQLTLPCPDQVWESYDLS 701 Query: 196 SGLAPAQGMDCSKRA 210 G +KR Sbjct: 702 YETLMEHGYGSTKRD 716 >gi|256271983|gb|EEU07000.1| YPR022C-like protein [Saccharomyces cerevisiae JAY291] Length = 1134 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 50/195 (25%), Gaps = 9/195 (4%) Query: 18 ANRSLLEKAL--THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75 ++L AL T +S S E E + D I G L + + ++ Sbjct: 530 KQPAILNLALIMTGASFLGS-----EYREQISDPICGPLRWIIFSHADFQPPSKTYIIQS 584 Query: 76 NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135 LV + R L SF+ + S+ + + I+ Sbjct: 585 LLLVEGYEKTSTNRYLHERSFL--HHGTTIQLLRRTPSLGGHPLMVKTGKTSGENSIQDP 642 Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195 ++ LK F + + + P D + Sbjct: 643 QEVYKRWIDFEMLKRIAFYAFYMDTTHAVVFGYWNLFINSNQIQLTLPCPDQVWESYDLS 702 Query: 196 SGLAPAQGMDCSKRA 210 G +KR Sbjct: 703 YETLMEHGYGSTKRD 717 >gi|148232118|ref|NP_001089022.1| ATP-binding cassette, sub-family A (ABC1), member 4 [Xenopus laevis] gi|38683260|gb|AAR26655.1| retinal ABCA4 transporter [Xenopus laevis] Length = 2363 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 4/67 (5%) Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG--MDCSKRAAEQVAAAE 218 + + + P H+ F + + SK+ AE+ Sbjct: 1055 VWIRGRDIQTHMDSIRQSLGMCPQHNVLFR-HLTVEEHILFYAQLKGKSKKQAERQV-EV 1112 Query: 219 VLKREGI 225 +L+ GI Sbjct: 1113 MLEDIGI 1119 >gi|164658275|ref|XP_001730263.1| hypothetical protein MGL_2645 [Malassezia globosa CBS 7966] gi|159104158|gb|EDP43049.1| hypothetical protein MGL_2645 [Malassezia globosa CBS 7966] Length = 294 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 20/40 (50%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 +L+ ALTH S H Q RL F+G R L +S F Sbjct: 117 TLVSHALTHESWMHGMQGHNRRLAFIGRRALKTYLSLFFF 156 >gi|85108136|ref|XP_962512.1| hypothetical protein NCU08299 [Neurospora crassa OR74A] gi|28924120|gb|EAA33276.1| hypothetical protein NCU08299 [Neurospora crassa OR74A] Length = 439 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 36/107 (33%), Gaps = 3/107 (2%) Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD--AKTELQEWAHAKFGVTPEY 175 V +++ A+Y G E A FV + R L K EL + P Sbjct: 295 FVRAVVGAIYAHCGREAAKAFVKAHIMSRTLDIAKLFEFKYPTRELAALCAREDFEPPVA 354 Query: 176 KVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221 ++ +G P F V + +G S A AA LK Sbjct: 355 RLLSETGRQSRTPVFVVGIYSGSDKLGEGAASSLDHARFKAAMNALK 401 >gi|154336651|ref|XP_001564561.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134061596|emb|CAM38627.1| RNA editing associated helicase 2,putative;with=GeneDB:Tb927.4.1500 [Leishmania braziliensis MHOM/BR/75/M2904] Length = 2250 Score = 36.8 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%) Query: 182 GPDHDPRFTVVVEISGLAP--AQGMDCSKRAAEQVAAAEVL 220 GP H + + G +G+ +K A++ AA L Sbjct: 1013 GPMHHRITYATIPLPGFEYLLGRGVGHNKVVAQRRAAMHAL 1053 >gi|221058875|ref|XP_002260083.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193810156|emb|CAQ41350.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 1945 Score = 36.4 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 11/141 (7%), Positives = 37/141 (26%), Gaps = 2/141 (1%) Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110 + + T + + N + E + +++ ++ DV + Sbjct: 1630 MNPMHHTEMNPMHHTDVNPMHHTDVNPMHHTEVNTMHHTDMNQMHHTEMNPMHHTDVNTM 1689 Query: 111 MTSIQADVVESLIAALYLD--GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + + + + ++ + + + + T++ H Sbjct: 1690 HHTEMNPMHHTDVNTMHHTDMNPMHHTEMNPMHHTDVNTMHHTEMNPMHHTDMNPMRHTD 1749 Query: 169 FGVTPEYKVTFRSGPDHDPRF 189 T + P+H F Sbjct: 1750 MNPMRNVTATQNAEPEHPRNF 1770 >gi|145234665|ref|XP_001389981.1| RNAse III [Aspergillus niger CBS 513.88] gi|134057653|emb|CAK38052.1| unnamed protein product [Aspergillus niger] Length = 154 Score = 36.4 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 4/51 (7%) Query: 7 STLEKRIGYAFANRSLLEKAL----THSSISHSYQESYERLEFLGDRILGL 53 TL+ IGY F + + +AL H + + +++L +GD +L + Sbjct: 12 QTLQSLIGYIFNDPNRAMEALVAAGVHMPGLINRTDGHKQLALVGDAVLRM 62 >gi|50237565|gb|AAT71898.1| dsRNA-specific ribonuclease [Rock bream iridovirus] Length = 265 Score = 36.4 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 56/227 (24%), Gaps = 31/227 (13%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE------- 70 N + THS +YE E LGD I+ ++ F Sbjct: 37 KNTQVFHSVFTHS--KAHPVNNYEWYEKLGDAIIASVMPQYYMERFPKLAHDPSATVART 94 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIA----- 124 +S + S T S +A+++ ++ + + D E+++ Sbjct: 95 VSQLAITYQSGTTMSTIAQKMGFLKWVVAHRDGVAPASYKEQQRLLEDTFEAMVGAISIT 154 Query: 125 --------ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + + + Sbjct: 155 MDDATGVKCSGHIACYRFLKYAYGLINMRLDGLIDNKSMLKELIDMHSSVLDSFTFEYTN 214 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H V ++ L SKR E+V A +VL + Sbjct: 215 NVMTLTVAHGKYTVSEVNVNNL--------SKRELEKVLAGKVLAQL 253 >gi|301621748|ref|XP_002940207.1| PREDICTED: mucin-2-like [Xenopus (Silurana) tropicalis] Length = 1197 Score = 36.4 bits (82), Expect = 2.9, Method: Composition-based stats. Identities = 12/155 (7%), Positives = 34/155 (21%), Gaps = 7/155 (4%) Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 + + +++ V+ + + + Sbjct: 1017 KKCDIITNNVFARCHSKVDPKPFYDACVNDVCSCDTGGDCECFCTAVAAYAQLCAKADVC 1076 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKF 169 + + + Y E + + R++ + T L+ Sbjct: 1077 IHWRTPEICPIFCDYYNTNENECMWHYFACGPEDRSIHHITKYCHSPSVTHLEGCYPTCP 1136 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 P Y +S H I+ + + G Sbjct: 1137 TERPYYDEINKSCVSH-----CSCIINNITYSIGQ 1166 >gi|284054885|ref|ZP_06385095.1| ribonuclease III [Arthrospira platensis str. Paraca] Length = 131 Score = 36.4 bits (82), Expect = 2.9, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 33/95 (34%) Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174 + V + + + + + + R++ K LQEW + + + P+ Sbjct: 13 CFEAVLAALYLSTNTLELIRPWLDPHLLERATEIFNDPARQNYKAALQEWTQSCYKILPQ 72 Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209 YKV + RFT V + G + + Sbjct: 73 YKVNETGYAGDEGRFTASVWLRDEQLGTGTGKTIK 107 >gi|301626584|ref|XP_002942470.1| PREDICTED: mucin-2-like, partial [Xenopus (Silurana) tropicalis] Length = 1401 Score = 36.4 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 12/156 (7%), Positives = 34/156 (21%), Gaps = 7/156 (4%) Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 + + +++ V+ + + + Sbjct: 1029 KKCDIITNNVFARCHSKVDPKPFYDACVNDVCSCDTGGDCECFCTAVAAYAQLCAKADVC 1088 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKF 169 + + + Y E + + R++ + T L+ Sbjct: 1089 IHWRTPEICPIFCDYYNTNENECMWHYFACGPEDRSIHHITKYCHSPSVTHLEGCYPTCP 1148 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205 P Y +S H I+ + + G Sbjct: 1149 TERPYYDEINKSCVSH-----CSCIINNITYSIGQH 1179 >gi|291227541|ref|XP_002733742.1| PREDICTED: fn3_vwb domain protein-like [Saccoglossus kowalevskii] Length = 398 Score = 36.4 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 16/147 (10%), Positives = 29/147 (19%), Gaps = 2/147 (1%) Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV--C 108 T N + + C D C Sbjct: 128 CNGCGGTCKRNGCSKNEVPFTGKVCKCPIGETCCLNNGCAKDYPGRGICRPSDDDLNEQC 187 Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168 + + G D ++ S +F +L + K Sbjct: 188 RNNEKAISMGPCENNCWCCKRKRKKQNGESGDPHFTTFDGLSYEFHGPCTYKLFQDCTDK 247 Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEI 195 + GP H+ + VV + Sbjct: 248 PRFAVHTEHISALGPGHNKTYVYVVWV 274 >gi|253741929|gb|EES98787.1| Dicer [Giardia intestinalis ATCC 50581] Length = 750 Score = 36.4 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 21 SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 LL+ ALT + Y++LE LGD L ++ L + EG L+ S S Sbjct: 630 RLLQLALT--------PQVYQKLELLGDAFLKCSLALHLHTRHPTLTEGALTRMRQSAES 681 Query: 81 AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133 + ++L + + + D ES++AA+ L G E Sbjct: 682 NHVLGVLTKKLPSP--VLEVITDAHPGIQPDSKVYGDTFESILAAVLLACGEE 732 Score = 35.7 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 43/99 (43%) Query: 36 YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95 + + ++RLE LGD +LG +++ L F +A G L LV ET + + R L L Sbjct: 328 HTDIFQRLELLGDAVLGFIVTARLLCLFPNASIGTLVELKMELVRNETLNHLTRMLGLPQ 387 Query: 96 FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134 +S+ L ++ + V ++G E Sbjct: 388 LAEISNQLLASSKTWADMYEEIVGSIFTGPNGINGCEEF 426 >gi|88769943|gb|ABD51459.1| H1L [Squirrel poxvirus] Length = 390 Score = 36.4 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 24/74 (32%) Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196 + DK+ ++ + + + + V + GP H P F V +S Sbjct: 296 MYADKFNEELPVTKVARWQSMNPVSVLAEYCQHTRREWVFVEQQQGPLHSPTFVAYVTVS 355 Query: 197 GLAPAQGMDCSKRA 210 G +K+ Sbjct: 356 GSRFPVERAHTKKE 369 >gi|195435718|ref|XP_002065826.1| GK18553 [Drosophila willistoni] gi|194161911|gb|EDW76812.1| GK18553 [Drosophila willistoni] Length = 248 Score = 36.4 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211 RD EL E+ + P +++ ++ + P+F ++ + G+ K+ A Sbjct: 32 DPNRDMFKELCEFCKSHDMPYPVFEIVEQNRNPNAPKFVACCTLTSIKR-YGISDKKKEA 90 Query: 212 EQVAAAEVL 220 Q AA+ +L Sbjct: 91 HQKAASAIL 99 >gi|145501699|ref|XP_001436830.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124403974|emb|CAK69433.1| unnamed protein product [Paramecium tetraurelia] Length = 589 Score = 36.4 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 15/156 (9%), Positives = 35/156 (22%), Gaps = 5/156 (3%) Query: 1 MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 M + ++E+ + + F+N + + LTH + Q+ + + L + Sbjct: 289 MKKFQQKSIEQMLEFGFSNCCFMARVLTHRIYPVTCQQINYLI-----KTLKSQSKKHMT 343 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 N ++ N+ E S V+ Sbjct: 344 NGKRKQQQASKKQNLNNYAQQYIPCFHEGECGSNSCTCVTCHKYCCCKGQCQQKSKSCDC 403 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156 + + K Sbjct: 404 RVCGYDEKKQKHSCPCYISGYECDPQLCKCQSCSNK 439 >gi|219124437|ref|XP_002182510.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405856|gb|EEC45797.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|225382102|gb|ACN89263.1| putative dicer-like protein [Phaeodactylum tricornutum] Length = 963 Score = 36.1 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%) Query: 21 SLLEKALT-HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70 LL +A T H Q YERLEFLGD +LG ++ S + Sbjct: 508 RLLLEATTVHP------QPFYERLEFLGDAVLGFCLALNAMTRNASLEYDW 552 >gi|301628369|ref|XP_002943328.1| PREDICTED: mucin-2-like, partial [Xenopus (Silurana) tropicalis] Length = 1565 Score = 36.1 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 12/155 (7%), Positives = 34/155 (21%), Gaps = 7/155 (4%) Query: 52 GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111 + + +++ V+ + + + Sbjct: 902 KKCDIITNNVFARCHSKVDPKPFYDACVNDVCSCDTGGDCECFCTAVAAYAQLCAKADVC 961 Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKF 169 + + + Y E + + R++ + T L+ Sbjct: 962 IHWRTPEICPIFCDYYNTNENECMWHYFACGPEDRSIHHITKYCHSPSVTHLEGCYPTCP 1021 Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 P Y +S H I+ + + G Sbjct: 1022 TERPYYDEINKSCVSH-----CSCIINNITYSIGQ 1051 >gi|327396952|dbj|BAK14318.1| RNase III-like ribonuclease [Red sea bream iridovirus] Length = 265 Score = 36.1 bits (81), Expect = 3.7, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 55/227 (24%), Gaps = 31/227 (13%) Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE------- 70 N + THS +YE E LGD I+ ++ F Sbjct: 37 KNTQVFHSVFTHS--KAHPVNNYEWYEKLGDAIIASVMPQYYMERFPKLAHDPSATVART 94 Query: 71 LSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIA----- 124 +S + S T S +A+++ ++ + D E+++ Sbjct: 95 VSQLAITYQSGTTMSTIAQKMGFLKWVVAHRDGAAPASYKEQQRLLEDTFEAMVGAISIT 154 Query: 125 --------ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176 + + + Sbjct: 155 MDDATGVKCSGHIACYRFLKYAYGLINMRLDGLIDNKSMLKELIDMHSSVLDSFTFEYTN 214 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 H V ++ L SKR E+V A +VL + Sbjct: 215 NVMTLTVAHGKYTVSEVNVNNL--------SKRELEKVLAGKVLAQL 253 >gi|159114523|ref|XP_001707486.1| Hypothetical protein GL50803_3666 [Giardia lamblia ATCC 50803] gi|157435591|gb|EDO79812.1| hypothetical protein GL50803_3666 [Giardia lamblia ATCC 50803] Length = 809 Score = 36.1 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 9/151 (5%), Positives = 34/151 (22%), Gaps = 1/151 (0%) Query: 32 ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91 + E EFL D + ++ ++ G+ + ++ + + Sbjct: 243 FDKQPILNEENFEFLYDSGVYIIHIPHVYMKRTCKLGGDYAAYPCKMIESIIGPALWDRY 302 Query: 92 DLASFIRVSSDLRKDVCSF-MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150 +R + + + + + + + Sbjct: 303 GHTFKLRFPNCSHQVSGPMGTEICCKCHMNDSVHWRIRVIPDDQPIWYNNDCTCGANCSC 362 Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181 + ++ + F P + Sbjct: 363 RCHTKTPESVFTVTYNCVFWCVPCATRCIYT 393 >gi|88602406|ref|YP_502584.1| ribonuclease III [Methanospirillum hungatei JF-1] gi|88187868|gb|ABD40865.1| RNAse III [Methanospirillum hungatei JF-1] Length = 151 Score = 36.1 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 5/131 (3%) Query: 7 STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62 LE+ GY F ++SLL +ALT + S + L LGD ++ L+I T L Sbjct: 8 EQLERITGYTFRDKSLLLRALTRLAYSKEQGLSEDSHLDALATLGDAVIELIILTRLVKG 67 Query: 63 FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122 +G +S++ LV+ AR + L ++R + + A+ +E+ Sbjct: 68 -GEHDKGAVSLKKMDLVNMSVLRDAARSIHLEQYVRWGKGEARMHVWTSGRVLAECMEAF 126 Query: 123 IAALYLDGGIE 133 ALYLDGGI+ Sbjct: 127 AGALYLDGGID 137 >gi|118396910|ref|XP_001030791.1| hypothetical protein TTHERM_01014450 [Tetrahymena thermophila] gi|89285106|gb|EAR83128.1| hypothetical protein TTHERM_01014450 [Tetrahymena thermophila SB210] Length = 1140 Score = 36.1 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 43/190 (22%), Gaps = 11/190 (5%) Query: 31 SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE-TCSQVAR 89 S Q+ Y EF D + + ++S V + + A+ Sbjct: 904 SYLVQLQQKYIFFEFTYD--ISVFNGNQFRCFYESKPLQIQKVYSDVHSKKKDAQHDAAK 961 Query: 90 ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 + + + ++ L+ E Sbjct: 962 KFIPHLLYYIKYKKPYFEDDDQEMLYLKSIKESTQINNLNQNEEQVSIHNQINQDLLLQT 1021 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS--GLAPAQ--GMD 205 S T + + F + F V Q G Sbjct: 1022 SYNDEIQGVTLIVQQHEKTFLQDVLKCYDSQELN----FFKCTVTFQKQNKVIFQEYGFG 1077 Query: 206 CSKRAAEQVA 215 SK+ A+QVA Sbjct: 1078 SSKKNAKQVA 1087 >gi|328722207|ref|XP_003247506.1| PREDICTED: double-stranded RNA-specific editase 1-like [Acyrthosiphon pisum] Length = 281 Score = 36.1 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223 +D +T +EI G G SK A+Q A ++ + Sbjct: 85 NDKTYTATIEIDGQTY-TGNHISKTEAKQKACEQLFRSM 122 >gi|317029357|ref|XP_001391402.2| RNase III domain protein [Aspergillus niger CBS 513.88] Length = 258 Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 15/28 (53%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILG 52 A+TH S + +RL FLG RI+ Sbjct: 108 LAVTHKSFDQGRRGFNDRLAFLGKRIVQ 135 >gi|255949164|ref|XP_002565349.1| Pc22g14250 [Penicillium chrysogenum Wisconsin 54-1255] gi|211592366|emb|CAP98713.1| Pc22g14250 [Penicillium chrysogenum Wisconsin 54-1255] Length = 255 Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 15/28 (53%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILG 52 A+TH S + +RL FLG RI+ Sbjct: 103 LAVTHKSFDQGRRGFNDRLAFLGKRIVQ 130 >gi|170095525|ref|XP_001878983.1| predicted protein [Laccaria bicolor S238N-H82] gi|164646287|gb|EDR10533.1| predicted protein [Laccaria bicolor S238N-H82] Length = 232 Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 12/133 (9%) Query: 20 RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79 +S L +A + +++ + LEF+GDR++ L S ++ +S+ R S Sbjct: 35 KSRLRRA---QNSVKRSKDNNDLLEFIGDRVVNLACSLIVDKVKESSDHHMFVGRVLS-- 89 Query: 80 SAETCSQVARELDLASF-------IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132 + +T ++A +LDL ++ AD+ ES A+Y + G Sbjct: 90 NNDTLGRIAYQLDLHKSAHLDQRDDFEVTEWNPRHAISPPKALADLFESYAGAVYEEHGW 149 Query: 133 EVAGTFVDKYWKQ 145 E ++ + + Sbjct: 150 ERVMDWLKQIFTP 162 >gi|134075874|emb|CAL00253.1| unnamed protein product [Aspergillus niger] Length = 339 Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 15/28 (53%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILG 52 A+TH S + +RL FLG RI+ Sbjct: 108 LAVTHKSFDQGRRGFNDRLAFLGKRIVQ 135 >gi|119479385|ref|XP_001259721.1| RNase III domain protein [Neosartorya fischeri NRRL 181] gi|119407875|gb|EAW17824.1| RNase III domain protein [Neosartorya fischeri NRRL 181] Length = 259 Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 15/28 (53%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILG 52 A+TH S + +RL FLG RI+ Sbjct: 109 LAVTHKSFDQGRRGFNDRLAFLGKRIVQ 136 >gi|115400141|ref|XP_001215659.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114191325|gb|EAU33025.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 264 Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 15/28 (53%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILG 52 A+TH S + +RL FLG RI+ Sbjct: 115 LAVTHKSFDQGRRGFNDRLAFLGKRIVQ 142 >gi|70997880|ref|XP_753672.1| RNase III domain protein [Aspergillus fumigatus Af293] gi|66851308|gb|EAL91634.1| RNase III domain protein [Aspergillus fumigatus Af293] gi|159126595|gb|EDP51711.1| RNase III domain protein [Aspergillus fumigatus A1163] Length = 259 Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 15/28 (53%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILG 52 A+TH S + +RL FLG RI+ Sbjct: 109 LAVTHKSFDQGRRGFNDRLAFLGKRIVQ 136 >gi|198422239|ref|XP_002129221.1| PREDICTED: similar to PDZ and LIM domain 5 [Ciona intestinalis] Length = 333 Score = 35.7 bits (80), Expect = 4.5, Method: Composition-based stats. Identities = 11/131 (8%), Positives = 24/131 (18%), Gaps = 6/131 (4%) Query: 85 SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144 ++ + + I + + + Sbjct: 172 YSTVEGINFHKECFICAAPNCQGNLDAGFIVDGGKAYCVTCHNKYFSQPCLKCNKPIFEE 231 Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204 + ++ + GV G DH+ F V G Sbjct: 232 AFRALNCQWHLSCFICTECNQPMYDGVFHMEGGRVYCGEDHERLFGVTCYACRKLIGPG- 290 Query: 205 DCSKRAAEQVA 215 +E A Sbjct: 291 -----DSEMNA 296 >gi|148643821|ref|YP_001274334.1| DNA repair ATPase [Methanobrevibacter smithii ATCC 35061] gi|148552838|gb|ABQ87966.1| predicted ATPase involved in DNA repair [Methanobrevibacter smithii ATCC 35061] Length = 853 Score = 35.7 bits (80), Expect = 4.8, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 53/215 (24%), Gaps = 15/215 (6%) Query: 5 RYSTLEKRIGYAFANRSL----LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60 + L K I Y F L + A+TH SI + + L + + + Sbjct: 68 KLYEL-KIIDYKFKCMLLEAYQMRNAITHKSIEDFLKSDNKIP-----FQLHRSLFDIAW 121 Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120 +F E + + + S ++ Sbjct: 122 KYFQLCNENYYYPGKPEYTPIYNLNSKTIKSTPKPSDNRNFSRCIICGRANDSKNSNFCI 181 Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180 S L I ++ + + ++L K + + Sbjct: 182 SCNNELEYQNEIINLKNNLNISHFTKEEVNQIHSSMYTSQLLIELTTKKLLKKTNRYYSL 241 Query: 181 SGPDHDP--RFTVVVEISGLAPAQ---GMDCSKRA 210 + +++ FT + G SK+ Sbjct: 242 NESEYEKLIEFTYECYDMEKTLTEFLNGKYTSKQI 276 >gi|46132944|ref|XP_389185.1| hypothetical protein FG09009.1 [Gibberella zeae PH-1] Length = 195 Score = 35.7 bits (80), Expect = 4.8, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 18/56 (32%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80 A+TH S + +RL LG L + + + ++ + Sbjct: 50 LAVTHKSFDQGRRGFNDRLALLGRMTLIMETTKTIVAKDPMSQPKKDKYNREPFTH 105 >gi|194695624|gb|ACF81896.1| unknown [Zea mays] Length = 181 Score = 35.7 bits (80), Expect = 5.0, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 5/87 (5%) Query: 18 ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72 N L L+ H S + YERLE++G +I L+++ L A L+ Sbjct: 38 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDLVMAERLLMKHLDAPGRWLA 97 Query: 73 VRFNSLVSAETCSQVARELDLASFIRV 99 + + + C + R+ L +I Sbjct: 98 EKHRRTLMNKYCGRYLRDKHLQHYIIY 124 >gi|302410091|ref|XP_003002879.1| RNase III domain-containing protein [Verticillium albo-atrum VaMs.102] gi|261357903|gb|EEY20331.1| RNase III domain-containing protein [Verticillium albo-atrum VaMs.102] Length = 279 Score = 35.7 bits (80), Expect = 5.0, Method: Composition-based stats. Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 25 KALTHSSISHSYQESYERLEFLG 47 A+TH S + + +RL FLG Sbjct: 133 LAVTHKSFDYGRRGFNDRLAFLG 155 >gi|297707365|ref|XP_002830479.1| PREDICTED: hypothetical protein LOC100455985 [Pongo abelii] Length = 500 Score = 35.7 bits (80), Expect = 5.1, Method: Composition-based stats. Identities = 14/154 (9%), Positives = 37/154 (24%), Gaps = 3/154 (1%) Query: 58 LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117 + H + + V TC + + + ++ V + + VC++ Sbjct: 76 YVHTHIYVYMCMYIHICVYICVCTYTCVYMCMYIHVCIYVYVHTRVYICVCTYTCVYMCM 135 Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK-FGVTPEYK 176 + I + Y + + H + + Sbjct: 136 YIHVCIYVYVHTRVYICVCIYTCVYVCVYIHVCIYVCIYTYVCIYVYTHMCVYMCRYIHI 195 Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDC--SK 208 + H V+ + + + SK Sbjct: 196 CVYMCRYIHICVCMCEVDDNKVRECPSIGKLASK 229 >gi|291239721|ref|XP_002739770.1| PREDICTED: multiple EGF-like-domains 10-like [Saccoglossus kowalevskii] Length = 1336 Score = 35.7 bits (80), Expect = 5.1, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 30/154 (19%), Gaps = 2/154 (1%) Query: 30 SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89 +S +H + +LGDR S + + + L TC + Sbjct: 498 ASCNHISGQCLCTPGWLGDRCAETCESWKYGFNCEKDCDCNLDNSAGCNAVDGTCICHSG 557 Query: 90 ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149 SS + T + S + Sbjct: 558 YQGAHCNSMCSSGYW--GGACDTPCDCEQQASCDPVDGTCECPAGYTGSRCENICNEGFY 615 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183 + + +GP Sbjct: 616 GRNCETPCPDCTNTNGNCDPVDGHCGCKSGWTGP 649 >gi|169780854|ref|XP_001824891.1| RNase III domain protein [Aspergillus oryzae RIB40] gi|238504942|ref|XP_002383700.1| RNase III domain protein [Aspergillus flavus NRRL3357] gi|83773631|dbj|BAE63758.1| unnamed protein product [Aspergillus oryzae] gi|220689814|gb|EED46164.1| RNase III domain protein [Aspergillus flavus NRRL3357] Length = 255 Score = 35.7 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 15/28 (53%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILG 52 A+TH S + +RL FLG RI+ Sbjct: 108 LAVTHKSFDQGRRGFNDRLAFLGRRIVE 135 >gi|154293059|ref|XP_001547085.1| hypothetical protein BC1G_14795 [Botryotinia fuckeliana B05.10] gi|150845699|gb|EDN20892.1| hypothetical protein BC1G_14795 [Botryotinia fuckeliana B05.10] Length = 264 Score = 35.7 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 10/28 (35%), Positives = 14/28 (50%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILG 52 A+TH S + +RL + G RIL Sbjct: 112 LAITHKSFDQGRRGFNDRLAYFGRRILN 139 >gi|291065638|gb|ADD73908.1| dsRNA binding protein [Banna virus] Length = 207 Score = 35.7 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%) Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + G+ ++ GP HDPRF + ++ Q D SK+ A Q Sbjct: 1 MDPVSVVHNFARSQGLPLNFETVGCEGPSHDPRFVIECKLLDFKH-QCTDSSKKRAIQK 58 >gi|316974656|gb|EFV58139.1| ATPase family AAA domain-containing protein 3-A [Trichinella spiralis] Length = 812 Score = 35.7 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 10/70 (14%) Query: 163 EWAHAKFGVTPEYKVTFRSGPDH---DPRF------TVVVEISGLAPAQGMDCSKRAAEQ 213 + + V + DH P F V +G +G +++ A+ Sbjct: 646 QMFNEICDVARNVISVEITYDDHPTEVPEFNSAKCVCCKVVWNGR-LVRGFGINQKYAKM 704 Query: 214 VAAAEVLKRE 223 AA + L + Sbjct: 705 DAAQKALVKL 714 >gi|9629651|ref|NP_044945.1| replicase polyprotein [Drosophila C virus] gi|81920773|sp|O36966|POLN_DCVEB RecName: Full=Replicase polyprotein; Contains: RecName: Full=Protein 1A; Contains: RecName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Contains: RecName: Full=Protein 2C; Contains: RecName: Full=Protein 3A; Contains: RecName: Full=Protein 3B; Contains: RecName: Full=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL gi|2388673|gb|AAC58807.1| replicase polyprotein [Drosophila C virus] Length = 1759 Score = 35.7 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 3/81 (3%) Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 R L + + K + + +Y P P F G Sbjct: 7 MACLNRILMNKMMFVEDKISTLKMVADYYQKEVKYDFDAVESPREAPVFRCTCRFLGYTI 66 Query: 201 -AQGMDCSKRAAEQVAAAEVL 220 QG+ K+ +Q AA ++L Sbjct: 67 MTQGIG--KKNPKQEAARQML 85 >gi|303319779|ref|XP_003069889.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240109575|gb|EER27744.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|320034181|gb|EFW16126.1| hypothetical protein CPSG_07176 [Coccidioides posadasii str. Silveira] Length = 267 Score = 35.3 bits (79), Expect = 6.1, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 +A+TH S + +RL +LG +++ L + L S + Sbjct: 116 QAVTHKSFDQGRRGFNDRLAYLGKQLVTLQATLALIQDPASYSQK 160 >gi|119183345|ref|XP_001242722.1| hypothetical protein CIMG_06618 [Coccidioides immitis RS] Length = 267 Score = 35.3 bits (79), Expect = 6.1, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69 +A+TH S + +RL +LG +++ L + L S + Sbjct: 116 QAVTHKSFDQGRRGFNDRLAYLGKQLVTLQATLALIQDPASYSQK 160 >gi|9663121|emb|CAC01121.1| drbp76 alpha [Homo sapiens] Length = 245 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 95 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 123 >gi|9663124|emb|CAC01124.1| ILF3 [Homo sapiens] Length = 441 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 91 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 119 >gi|9663123|emb|CAC01123.1| drbp76 gamma [Homo sapiens] Length = 237 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 91 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 119 >gi|9663122|emb|CAC01122.1| drbp76 [Homo sapiens] Length = 249 Score = 35.3 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 91 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 119 >gi|312371610|gb|EFR19749.1| hypothetical protein AND_21879 [Anopheles darlingi] Length = 1007 Score = 35.3 bits (79), Expect = 6.9, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 45/171 (26%), Gaps = 26/171 (15%) Query: 45 FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104 FLG + L L + ++ + + + + + Sbjct: 819 FLGSTGVNCLSQRELAEGYQPWARRDMMKQSAPVTG-----------GMGMHLLQKMGWQ 867 Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK---------------QRALK 149 + L L G E + ++ +K Sbjct: 868 PGEGLGKEKNGSLHPLLLDVKLDKRGLGEGEDKHRNMPFQAPLFSRRGDNRSRFPPNQVK 927 Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200 + + L E+A + P Y++ SGP H F V ++GL Sbjct: 928 VCTEGKHPVSILGEYASKRKWNAPMYELVHESGPGHAKNFIFKVLVNGLEY 978 >gi|307567933|pdb|2L33|A Chain A, Solution Nmr Structure Of Drbm 2 Domain Of Interleukin Enhancer- Binding Factor 3 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4527e Length = 91 Score = 34.9 bits (78), Expect = 7.7, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G QG + Sbjct: 35 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 63 >gi|291065600|gb|ADD73889.1| dsRNA binding protein [Banna virus] gi|291065604|gb|ADD73891.1| dsRNA binding protein [Banna virus] gi|291065606|gb|ADD73892.1| dsRNA binding protein [Banna virus] Length = 208 Score = 34.9 bits (78), Expect = 7.7, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + G+ +K GP HDPRF + ++ Q D SK+ A Q Sbjct: 1 MMDPVSVVHSFARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59 >gi|223712803|gb|ACN22083.1| VP12 [Banna virus] Length = 208 Score = 34.9 bits (78), Expect = 8.1, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + G+ +K GP HDPRF + ++ Q D SK+ A Q Sbjct: 1 MMDPVSVVHSFARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59 >gi|291065602|gb|ADD73890.1| dsRNA binding protein [Banna virus] gi|291065608|gb|ADD73893.1| dsRNA binding protein [Banna virus] gi|291065610|gb|ADD73894.1| dsRNA binding protein [Banna virus] gi|291065612|gb|ADD73895.1| dsRNA binding protein [Banna virus] gi|291065616|gb|ADD73897.1| dsRNA binding protein [Banna virus] Length = 208 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + G+ +K GP HDPRF + ++ Q D SK+ A Q Sbjct: 1 MMDPVSVVHSFARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59 >gi|149582794|ref|XP_001521100.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus] Length = 173 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 +G HD RF + VE+ G +G + Sbjct: 31 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 59 >gi|210161026|gb|ACJ09363.1| VP12 [Banna virus] Length = 208 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 1/60 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + G+ +K GP HDPRF + + Q D SK+ A Q Sbjct: 1 MMDPVSVVHSFARSQGLPLNFKTVGCEGPSHDPRFIIECKFLDFQH-QCTDSSKKRAIQK 59 >gi|145476953|ref|XP_001424499.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124391564|emb|CAK57101.1| unnamed protein product [Paramecium tetraurelia] Length = 484 Score = 34.9 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 31/133 (23%) Query: 29 HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88 H S H ++ L D L + K+ + + S + + Sbjct: 287 HVSSLHFNNQNNSLLSSGWDANLVMWNIDQKDIVMKQFKKEHQAKIYCVQYSNDNQIIAS 346 Query: 89 RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148 LD + L + + + V Y ++ + Sbjct: 347 CSLDKTIRLWDIHGLAQIGQPLQGHSEKVDWIQFTPQYLISCSQSEKNIIVWDYMHRQQI 406 Query: 149 KSGKFRRDAKTEL 161 + D + Sbjct: 407 WNFIPGNDPHRFV 419 >gi|291065614|gb|ADD73896.1| dsRNA binding protein [Banna virus] Length = 208 Score = 34.9 bits (78), Expect = 8.6, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + G+ +K GP HDPRF + ++ Q D SK+ A Q Sbjct: 1 MMDPVSVVHSFARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59 >gi|224613114|dbj|BAH24222.1| dsRNA-specific ribonuclease RNaseIII [Mulberry dwarf phytoplasma] Length = 157 Score = 34.9 bits (78), Expect = 9.2, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 12/37 (32%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 T +YK+ G H F V + G + Sbjct: 87 KTIQYKIVQEQGFAHSKNFVAEVYLEKNLLGTGEGNT 123 >gi|320158397|ref|YP_004190775.1| putative DNA-dependent RNA polymerase [Vibrio vulnificus MO6-24/O] gi|319933709|gb|ADV88572.1| possible DNA-dependent RNA polymerase [Vibrio vulnificus MO6-24/O] Length = 927 Score = 34.9 bits (78), Expect = 9.3, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 46/184 (25%), Gaps = 10/184 (5%) Query: 42 RLEFLGDRILG--LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99 +L F G + + + K + + V T + + + + Sbjct: 435 KLNFQGADYVKALCQFADGVALGKHGLKWLMIHMANLMGVDKVTFEERVKWVKEHKAQII 494 Query: 100 SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT 159 + C ++++ A L + + AL Sbjct: 495 ALAKDPRECRDFLMSADKPMQAIACATELAEAWSMKNHEEFVSYIPIALDGSCSGLQILG 554 Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAA 217 V + VV +I + G SK AE +AA Sbjct: 555 AALRCEKTGEHVNLIPAGRVAD------IYRVVADIVTNEFKSMVGECKSKEDAEALAAQ 608 Query: 218 EVLK 221 + L+ Sbjct: 609 KALE 612 >gi|169218484|gb|ACA50132.1| VP12 [Banna virus] Length = 208 Score = 34.9 bits (78), Expect = 9.3, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + G+ +K GP HDPRF + ++ Q D SK+ A Q Sbjct: 1 MMDPVSVVHSFARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59 >gi|210161028|gb|ACJ09364.1| VP12 [Banna virus] gi|210161030|gb|ACJ09365.1| VP12 [Banna virus] Length = 208 Score = 34.9 bits (78), Expect = 9.4, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 1/60 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + G+ +K GP HDPRF + + Q D SK+ A Q Sbjct: 1 MMDPVSVVHSFARSQGLPLNFKTVGCEGPSHDPRFIIECKFLDFQH-QCTDSSKKRAIQK 59 >gi|291065624|gb|ADD73901.1| dsRNA binding protein [Banna virus] gi|291065634|gb|ADD73906.1| dsRNA binding protein [Banna virus] gi|291065636|gb|ADD73907.1| dsRNA binding protein [Banna virus] Length = 208 Score = 34.5 bits (77), Expect = 9.8, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214 + G+ +K GP HDPRF + ++ Q D SK+ A Q Sbjct: 1 MMDPVSVVHSFARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59 >gi|156379115|ref|XP_001631304.1| predicted protein [Nematostella vectensis] gi|156218342|gb|EDO39241.1| predicted protein [Nematostella vectensis] Length = 440 Score = 34.5 bits (77), Expect = 9.8, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 2/167 (1%) Query: 48 DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107 D + + + + ++ + + + ++E ++ D+ V + Sbjct: 253 DVVKAYIKTAIECDNSFGNTKYCVLRLMHEQYTSEAAAEFTAAKDIREMCEVVGLVSFYK 312 Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167 + +T + G ++ + K K+ L EW Sbjct: 313 NTLLTRQAKQQALEKCGSQVGTGMARSPYGLCLEFLILFSRKDYPDTITPKSVLFEWTRD 372 Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQ 213 + P Y++ R+ + D F +V + A + SKR AEQ Sbjct: 373 QKLQPPSYEMVSRTREE-DCSFKSIVIVDNTKYASTEWEKSKRHAEQ 418 >gi|224613128|dbj|BAH24234.1| dsRNA-specific ribonuclease RNaseIII [Porcelain vine witches'-broom phytoplasma] Length = 131 Score = 34.5 bits (77), Expect = 9.9, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 12/37 (32%) Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207 T +YK+ G H F V + G + Sbjct: 61 KTIQYKIVQEQGFAHSKNFVAEVYLEKNLLGTGEGNT 97 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.307 0.113 0.329 Lambda K H 0.267 0.0351 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,820,155,439 Number of Sequences: 14124377 Number of extensions: 90227601 Number of successful extensions: 266587 Number of sequences better than 10.0: 5225 Number of HSP's better than 10.0 without gapping: 4324 Number of HSP's successfully gapped in prelim test: 901 Number of HSP's that attempted gapping in prelim test: 252118 Number of HSP's gapped (non-prelim): 8301 length of query: 227 length of database: 4,842,793,630 effective HSP length: 134 effective length of query: 93 effective length of database: 2,950,127,112 effective search space: 274361821416 effective search space used: 274361821416 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 78 (34.9 bits)