BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780940|ref|YP_003065353.1| ribonuclease III [Candidatus
Liberibacter asiaticus str. psy62]
         (227 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|302391792|ref|YP_003827612.1| RNAse III [Acetohalobium arabaticum DSM 5501]
 gi|302203869|gb|ADL12547.1| RNAse III [Acetohalobium arabaticum DSM 5501]
          Length = 234

 Score =  172 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 121/228 (53%), Gaps = 6/228 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTL 58
             +   L+ +I   FA+  LL++ALTH S ++  ++      ERLEFLGD +L +++S  
Sbjct: 7   KEKLEELQSKIDIYFADLDLLQRALTHKSYANENRDLNLKDNERLEFLGDSVLDIVVSEY 66

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +FN +    EG+L+    S+VSA T +  ARELDL  ++ +            +SI AD 
Sbjct: 67  MFNRYPDYPEGKLAKMRASVVSAPTLAAKARELDLGRYLLLGHGEEMTGGRKRSSILADA 126

Query: 119 VESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            E+L+ ++YLD  +++A  F+         + ++G+  RD KT LQE    +    PEY 
Sbjct: 127 FEALVGSIYLDQDLDIAEDFIMKLMKVDIESAEAGEHIRDYKTTLQEMIQKRSNARPEYY 186

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           V    GPDH   FTV V+ +  +  +G   SK+ A+Q AA   LK+  
Sbjct: 187 VIEEKGPDHSKEFTVEVKFNDRSLGEGTGSSKKEAQQQAAKNALKKLK 234


>gi|325677853|ref|ZP_08157495.1| ribonuclease III [Ruminococcus albus 8]
 gi|324110407|gb|EGC04581.1| ribonuclease III [Ruminococcus albus 8]
          Length = 232

 Score =  171 bits (432), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 5/230 (2%)

Query: 1   MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIS 56
           M      +  +KRIGY+F N  LL +AL+HSS ++  ++   S ERLEFLGD +L +++S
Sbjct: 1   MDEEKNLAEFQKRIGYSFKNDRLLYEALSHSSFANENKKQRHSNERLEFLGDSVLSIVVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             +F HF    EGEL+    SLV  +   + + + +L  +I +             SI +
Sbjct: 61  DYIFEHFKHLPEGELTKLRASLVCEKALFEFSHKFELGKYIFLGKGEELTGGRERASIVS 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E++IAA+YLDGG+E A   +  +  +    +          + +    +        
Sbjct: 121 DAMEAVIAAIYLDGGLEAARKHIMGFLPKDINPAHTETFHDYKTVLQEVIQRNPEEKIEY 180

Query: 177 VTF-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
                 GPDHD RFTV V+++     +G+  SK++AEQ AA E L   GI
Sbjct: 181 FLKGEEGPDHDKRFTVQVKLNSNVIGEGVGRSKKSAEQNAAKEALDLMGI 230


>gi|254780940|ref|YP_003065353.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040617|gb|ACT57413.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62]
          Length = 227

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 227/227 (100%), Positives = 227/227 (100%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF
Sbjct: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE
Sbjct: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR
Sbjct: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT
Sbjct: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227


>gi|317057716|ref|YP_004106183.1| ribonuclease III [Ruminococcus albus 7]
 gi|315449985|gb|ADU23549.1| ribonuclease III [Ruminococcus albus 7]
          Length = 232

 Score =  170 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 5/230 (2%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIS 56
           M   +     +K+IGY F N  LL +AL+HSS ++  ++   S ERLEFLGD +L +++S
Sbjct: 1   MDEQKCLEAFQKKIGYHFKNEKLLYEALSHSSFANENKKQRHSNERLEFLGDSVLSIVVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             +F HF    EGEL+    SLV  +   + + +++L  +I +             SI +
Sbjct: 61  DHIFEHFKHLPEGELTKLRASLVCEKALFEFSHKIELGKYIFLGKGEELTGGRERASIVS 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E++IAA+YLDGG+E A   +  +  +    +          + +    +        
Sbjct: 121 DAMEAVIAAIYLDGGLEAARKHIMNFLPKDLNPAHTDTFHDYKTVLQEIIQRNPEEKVEY 180

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
                 GPDHD RFTV V+++     +G+  SK+ AEQ AA E L   G+
Sbjct: 181 FLKGEDGPDHDKRFTVQVKLNNNVIGEGIGRSKKNAEQNAAKEALALMGV 230


>gi|295696065|ref|YP_003589303.1| ribonuclease III [Bacillus tusciae DSM 2912]
 gi|295411667|gb|ADG06159.1| ribonuclease III [Bacillus tusciae DSM 2912]
          Length = 231

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 110/226 (48%), Gaps = 4/226 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTL 58
            A ++  LE R+G  F N SLL +A THSS  + ++   E  ERLEFLGD +L LL+S  
Sbjct: 1   MATKWDELEARLGITFRNASLLRQAFTHSSYRNEHRGDVEDNERLEFLGDAVLELLVSEF 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  +    EGEL+    ++V   +  + A  L L  +IR+             S+ ADV
Sbjct: 61  LFRAYPRFPEGELTRMRAAIVCEPSLVRFATALGLDQYIRLGRGEEMSGGRRRPSLLADV 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+LI A++LD G+E A  F+ +        +      D KT LQE           Y++
Sbjct: 121 YEALIGAIFLDQGLEAAREFLQRMMFPALQREQAPILDDYKTMLQEHVQKVGLGPLTYRI 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           T   GP H   F   V I G A  +G   SK+ AEQ AA E L + 
Sbjct: 181 TDERGPAHHREFVAQVWIGGQAYGEGSGRSKKEAEQHAAREALMKL 226


>gi|291530279|emb|CBK95864.1| RNAse III [Eubacterium siraeum 70/3]
          Length = 226

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 114/224 (50%), Gaps = 3/224 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDS 65
           + LE+ IGY F N  LL++ALTHSS ++  +  S ERLEFLGD +L +++S  LF +  +
Sbjct: 2   TELEQIIGYTFKNPELLKEALTHSSYTNGKHLRSNERLEFLGDSVLSIVVSEHLFENLTN 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+    S+V        AR++DL  +I +             SI AD  E+LIAA
Sbjct: 62  LPEGQLTKIRASVVCENALYPFARKIDLGKYIFLGKGEEHTGGRDRHSILADAFEALIAA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGG E A  F+  +       S       D KT LQE           Y+++  SG 
Sbjct: 122 IYLDGGFEAARNFILPFIPPLDKLSTGKFLLGDYKTVLQEIIQQNPEERVTYEISDESGQ 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
            H+ +FT  V ++G     G   SK+ AEQ AA E +   G  T
Sbjct: 182 AHNKQFTANVLLNGQIIGTGKGKSKKEAEQSAAKEAISLMGYET 225


>gi|167751472|ref|ZP_02423599.1| hypothetical protein EUBSIR_02468 [Eubacterium siraeum DSM 15702]
 gi|167655280|gb|EDR99409.1| hypothetical protein EUBSIR_02468 [Eubacterium siraeum DSM 15702]
 gi|291557094|emb|CBL34211.1| RNAse III [Eubacterium siraeum V10Sc8a]
          Length = 226

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 115/224 (51%), Gaps = 3/224 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDS 65
           + LE+ IGY F N  LL++ALTHSS ++  +  S ERLEFLGD +L +++S  LF +  +
Sbjct: 2   TELEQIIGYTFKNPELLKEALTHSSYTNGKHLRSNERLEFLGDSVLSIVVSEHLFENLTN 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+    S+V        AR++DL  +I +             SI AD  E+LIAA
Sbjct: 62  LPEGQLTKIRASVVCENALYPFARKIDLGKYIFLGKGEEHTGGRDRHSILADAFEALIAA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGG E A +F+  +       S       D KT LQE           Y+++  SG 
Sbjct: 122 IYLDGGFEAARSFILPFIPPLDKLSTGKFLLGDYKTVLQEIIQQNPEERVTYEISDESGQ 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
            H+ +FT  V ++G     G   SK+ AEQ AA E +   G  T
Sbjct: 182 AHNKQFTANVLLNGQIIGTGKGKSKKEAEQSAAKEAISLMGYET 225


>gi|257440564|ref|ZP_05616319.1| ribonuclease III [Faecalibacterium prausnitzii A2-165]
 gi|257196887|gb|EEU95171.1| ribonuclease III [Faecalibacterium prausnitzii A2-165]
          Length = 224

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 84/222 (37%), Positives = 117/222 (52%), Gaps = 7/222 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFD 64
            LE  IGY F N  LLE ALTH+S ++  +   +  ERLEFLGD +L ++ +  LF+ + 
Sbjct: 4   QLETIIGYKFKNPKLLETALTHTSYANESRTPVQHNERLEFLGDSVLQIVSADYLFHAYA 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+   +SLVS     Q A+E++L  ++R+     +       S+ +D  E++IA
Sbjct: 64  DRPEGDLTRIRSSLVSEGALFQFAQEINLGEYLRLGRGEERCGGRTRPSVVSDAFEAVIA 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           ALYLDGG+EVA +F+         +      D KT LQE           Y V   SGPD
Sbjct: 124 ALYLDGGMEVAKSFIL----PFITEGKHAEADYKTRLQEIVQQNPEERLSYVVEQESGPD 179

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           HD  F V V  +    A+G   SK+ AEQ AA E LK  G+ 
Sbjct: 180 HDKHFVVAVRFNSDKVARGEGRSKKMAEQHAAREALKLLGVI 221


>gi|160934422|ref|ZP_02081809.1| hypothetical protein CLOLEP_03295 [Clostridium leptum DSM 753]
 gi|156867095|gb|EDO60467.1| hypothetical protein CLOLEP_03295 [Clostridium leptum DSM 753]
          Length = 237

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
            +  LE+ +GYAF N  LL+ ALTHSS ++       S ERLEFLGD +L +++S  +F 
Sbjct: 13  DFRRLEENLGYAFQNPKLLKTALTHSSYANEAHNGTRSNERLEFLGDAVLSIVVSDYIFR 72

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     EGEL+    SLV  ++  + +R L++ SF+R+S   +    +  +SI AD  E+
Sbjct: 73  NCPHLPEGELTKMRASLVCEKSLQRFSRVLEIGSFLRLSRGEQNSGGAERSSILADAFEA 132

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++AA+YLDGG+E A  FV ++             +D KT LQE           Y +   
Sbjct: 133 VLAAIYLDGGMEKAREFVLRFTVPEMENPKPKAFKDYKTALQEIVQQNPEEKLNYVLVGE 192

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGPDH+  F V V ++     +G   SK+ AEQ AA E L+  G
Sbjct: 193 SGPDHNKHFVVEVHLNSNVIGKGGGRSKKEAEQQAAREALELMG 236


>gi|291542641|emb|CBL15751.1| RNAse III [Ruminococcus bromii L2-63]
          Length = 225

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
             L+KRIGY F N  LL +ALTHSS ++ ++    +  ERLEFLGD +L +++S  +F H
Sbjct: 2   EDLQKRIGYTFKNTDLLTEALTHSSYANEHKAKHIKYNERLEFLGDAVLSIVVSDYIFKH 61

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                EGEL+    SLV  +T  + A++++L  ++ +S   R +  +   SI +D  E+L
Sbjct: 62  CPELPEGELTKLRASLVCEKTLFEFAKQIELGKYLVLSKGERNNGGAERPSILSDAFEAL 121

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           IAA+Y+DGGI+ A   +  +       S K +  D KT LQE      G   EY +   S
Sbjct: 122 IAAIYIDGGIDPASKHILNFVIPAIKNSKKKKLNDYKTALQEIIQKNPGEQLEYVLVGES 181

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GPDH+  F V V ++     +G   SK+ AEQ AA E L+  G
Sbjct: 182 GPDHNKHFVVEVHLNSNVIGKGGGRSKKEAEQQAAREALELMG 224


>gi|269123548|ref|YP_003306125.1| ribonuclease III [Streptobacillus moniliformis DSM 12112]
 gi|268314874|gb|ACZ01248.1| ribonuclease III [Streptobacillus moniliformis DSM 12112]
          Length = 233

 Score =  167 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 6/230 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  +    L  +I Y F N+ LL +ALTHSS  + +     +  ERLEFLGD ++ L+ +
Sbjct: 1   MKKMDLEKLMSKINYTFKNKKLLLEALTHSSYVNEHNFPNIKDNERLEFLGDSVMDLITT 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++ +   + EGELS   + ++S    S ++R+L+L ++I +S+           S+  
Sbjct: 61  EYIYKNNLKSNEGELSKIKSQIISETVFSTISRDLNLGNYIFLSNGENMSGGRERNSVLG 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPE 174
           DV E+++ A+YLD         V K  + +       ++  D K+ LQE    K+ VTP 
Sbjct: 121 DVFEAMVGAIYLDSDYATTRDVVLKLLESKINNLDKIEWVSDYKSALQEITQLKYKVTPI 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           Y V    GPDHD  F + V +      +G+  SK+ AE++AA + +++  
Sbjct: 181 YTVLSEIGPDHDKTFEIEVRVEERLYGKGVAKSKKMAEKIAAKQAIEKLN 230


>gi|254469250|ref|ZP_05082655.1| ribonuclease III [Pseudovibrio sp. JE062]
 gi|211961085|gb|EEA96280.1| ribonuclease III [Pseudovibrio sp. JE062]
          Length = 235

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 103/224 (45%), Positives = 145/224 (64%), Gaps = 3/224 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + LE+RIGY F N+ LL +ALTH+S    + +  +SY+RLEFLGDR+LGL I+T+L  +F
Sbjct: 11  AALEERIGYKFTNKELLVRALTHASALPVAKASLQSYQRLEFLGDRVLGLAIATMLEENF 70

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGEL+ R N LV  ETC++V++ + +   +RV            T+I AD+ ESLI
Sbjct: 71  PKADEGELARRLNQLVKRETCAEVSKVIGIGQHMRVGEAEAHTGGRTKTAILADMCESLI 130

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AA+YLD G + A  F+ +Y+ +R +      RDAKT LQEWA +K   TP+Y+   RSGP
Sbjct: 131 AAIYLDSGFDEAENFIKRYFAERMVSYTGPLRDAKTTLQEWAQSKGRPTPQYETISRSGP 190

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           DH P F + V + G+ P + +  SKR AEQ AA  +L+REG+W+
Sbjct: 191 DHAPIFKIRVNVEGVDPGEAVGSSKRIAEQSAAENILRREGVWS 234


>gi|160946001|ref|ZP_02093227.1| hypothetical protein FAEPRAM212_03534 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443732|gb|EDP20737.1| hypothetical protein FAEPRAM212_03534 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103252|emb|CBL00796.1| RNAse III [Faecalibacterium prausnitzii SL3/3]
          Length = 224

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 86/222 (38%), Positives = 116/222 (52%), Gaps = 7/222 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFD 64
            LE  IGY F N  LLE ALTH+S ++  +   +  ERLEFLGD +L ++ +  LF+ + 
Sbjct: 4   QLETIIGYKFKNPELLEIALTHTSYANESRTPVKHNERLEFLGDSVLQIVSADYLFHAYA 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    SLVS     Q A+E+DL  ++R+     +       S+ +D  E++IA
Sbjct: 64  DRPEGDLTRIRASLVSESALFQFAQEIDLGEYLRLGRGEERCGGRTRPSVVSDAFEAVIA 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           ALYLDGG+EVA  F+         +      D KT LQE           Y V   SGPD
Sbjct: 124 ALYLDGGMEVARKFIL----PFITEGKHAEADYKTRLQEIVQQNPEERLSYVVESESGPD 179

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           HD  F V V  +    A+G   SK+AAEQ AA E LK  G+ 
Sbjct: 180 HDKHFVVAVRFNSDRVARGEGRSKKAAEQCAAKEALKLLGVI 221


>gi|295100361|emb|CBK97906.1| RNAse III [Faecalibacterium prausnitzii L2-6]
          Length = 224

 Score =  167 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 115/222 (51%), Gaps = 7/222 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFD 64
            LE  IGY F +  LLE ALTH+S ++  +   +  ERLEFLGD +L ++ +  LF+ + 
Sbjct: 4   QLETIIGYKFKHPELLETALTHTSYANETRPPVKHNERLEFLGDSVLQIVSADYLFHAYA 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+   +SLVS     Q A+E++L  ++R+             S+ +D  E+LIA
Sbjct: 64  DRPEGDLTRIRSSLVSEGALFQFAQEINLGDYLRLGRGEEHCGGRTRPSVVSDAFEALIA 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           ALYLDGG+EVA  F+         +      D KT LQE           Y V   +GPD
Sbjct: 124 ALYLDGGMEVAKNFIL----PFITEGKHAEADYKTRLQEIVQQNPEEKLSYVVEQETGPD 179

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           H+  F V V  +    A+G   SK+ AEQ AA E LK  G+ 
Sbjct: 180 HNKHFVVAVRFNSDCVARGEGRSKKMAEQHAAREALKLLGVI 221


>gi|126698844|ref|YP_001087741.1| ribonuclease III [Clostridium difficile 630]
 gi|254974792|ref|ZP_05271264.1| ribonuclease III [Clostridium difficile QCD-66c26]
 gi|255092180|ref|ZP_05321658.1| ribonuclease III [Clostridium difficile CIP 107932]
 gi|255100264|ref|ZP_05329241.1| ribonuclease III [Clostridium difficile QCD-63q42]
 gi|255306204|ref|ZP_05350376.1| ribonuclease III [Clostridium difficile ATCC 43255]
 gi|255313919|ref|ZP_05355502.1| ribonuclease III [Clostridium difficile QCD-76w55]
 gi|255516598|ref|ZP_05384274.1| ribonuclease III [Clostridium difficile QCD-97b34]
 gi|255649698|ref|ZP_05396600.1| ribonuclease III [Clostridium difficile QCD-37x79]
 gi|260682854|ref|YP_003214139.1| ribonuclease III [Clostridium difficile CD196]
 gi|260686452|ref|YP_003217585.1| ribonuclease III [Clostridium difficile R20291]
 gi|306519814|ref|ZP_07406161.1| ribonuclease III [Clostridium difficile QCD-32g58]
 gi|115250281|emb|CAJ68103.1| ribonuclease III [Clostridium difficile]
 gi|260209017|emb|CBA62108.1| putative ribonuclease III [Clostridium difficile CD196]
 gi|260212468|emb|CBE03371.1| putative ribonuclease III [Clostridium difficile R20291]
          Length = 236

 Score =  167 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 118/226 (52%), Gaps = 5/226 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNH 62
                E  I Y F N+  + +ALTHSS S+  ++    ERLEFLGD +LG++IS  LFN 
Sbjct: 10  NIQRFENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIVISDYLFNE 69

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             +  EGEL+    ++V  ++ S+VA +++L   + +            TSI AD  E++
Sbjct: 70  EANLPEGELTKLRANIVCEDSLSEVANDINLGIHMLLGRGEEATGGRHRTSILADAFEAV 129

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           IAA+YLDGG E A  F+  + +     S K    RD KT LQE           Y++   
Sbjct: 130 IAAIYLDGGFESARQFILHHMENIIYDSRKGNIFRDYKTHLQEVLQGNGENNIWYRLIEE 189

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            GPDH+ RF + V I+      G   SK+ AEQ+AA   LK+  +W
Sbjct: 190 KGPDHNKRFVMEVGINDDVLGIGEGKSKKEAEQLAAKIALKK-KLW 234


>gi|167463674|ref|ZP_02328763.1| ribonuclease III [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382556|ref|ZP_08056436.1| ribonuclease III-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153472|gb|EFX45877.1| ribonuclease III-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 287

 Score =  167 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 113/230 (49%), Gaps = 6/230 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+      L+ RIG  F N  LL +A THSS  + ++    +  ERLEFLGD +L L++S
Sbjct: 55  MNG-DLKELQARIGITFNNVDLLRQAFTHSSYVNEHRITNHKDNERLEFLGDAVLELMVS 113

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EGEL+    S+V   +    A  L+  S++ +             ++ A
Sbjct: 114 EHLYFTYPRRAEGELTKLRASIVCEPSLVNFAERLNFGSYVLLGKGEEMTGGRTRPALLA 173

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEY 175
           D+ ES I ALYLD G+E    F+ K+        GK    D KT+LQE+       T EY
Sbjct: 174 DLFESFIGALYLDQGLEPVRDFLIKHVFPHISNEGKLLVVDYKTQLQEYVQHHNLGTLEY 233

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           ++    GP H+  F   V++ G    +G+  SK+ AEQ AA++   +  +
Sbjct: 234 RIVEERGPAHEREFVAEVQMDGKILGKGVGRSKKEAEQQAASKASVKLNV 283


>gi|315652049|ref|ZP_07905050.1| ribonuclease III [Eubacterium saburreum DSM 3986]
 gi|315485696|gb|EFU76077.1| ribonuclease III [Eubacterium saburreum DSM 3986]
          Length = 228

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 115/228 (50%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIS 56
           M+    + L++ +GY + NR LL++ALTHSS ++ +      S ERLEFLGD +L L+ S
Sbjct: 1   MNN-NLNELQELLGYEYKNRELLKQALTHSSYANEHQLGKNGSNERLEFLGDAVLELVSS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
              +  +    EGEL+    S V        A  + L+ FIR+          F  SI +
Sbjct: 60  EFFYEVYPDKPEGELTKIRASFVCEPALVDCAGNIRLSEFIRLGKGEEHTGGRFRPSIIS 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E++I ++YLDGG   A   + K+          F  D+KT LQE   ++     EY 
Sbjct: 120 DTFEAVIGSIYLDGGFANAKEVILKFILNGYENKV-FFYDSKTILQEIIQSQDSRPVEYC 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +    GPDH  +F V V I+G     G   SK++AEQ AA E LK+ G
Sbjct: 179 LLSEEGPDHLKKFVVAVNINGQVAGVGEGVSKKSAEQAAAYEALKKLG 226


>gi|239826585|ref|YP_002949209.1| ribonuclease III [Geobacillus sp. WCH70]
 gi|259491901|sp|C5D8T6|RNC_GEOSW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|239806878|gb|ACS23943.1| ribonuclease III [Geobacillus sp. WCH70]
          Length = 246

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 105/225 (46%), Gaps = 5/225 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L+K+IG  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF
Sbjct: 17  KFKELQKKIGIFFTNEKLLIQAFTHSSYVNEHRRRPHEDNERLEFLGDAVLELTVSQYLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EGEL+    ++V   +  + A  L     + +             ++ ADV E
Sbjct: 77  KKFPHMSEGELTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G++    F+ +    +  +       D K++LQE          EY +  
Sbjct: 137 AFIGALYLDQGMDAVMQFLGQTIFPKIDEGAFSHVMDFKSQLQELVQRDGIGVLEYSILE 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GP H+  F   V ++G     G+  SK+ AEQ AA   L++  
Sbjct: 197 EKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQKLK 241


>gi|255655258|ref|ZP_05400667.1| ribonuclease III [Clostridium difficile QCD-23m63]
 gi|296451243|ref|ZP_06892983.1| ribonuclease III [Clostridium difficile NAP08]
 gi|296880405|ref|ZP_06904368.1| ribonuclease III [Clostridium difficile NAP07]
 gi|296259849|gb|EFH06704.1| ribonuclease III [Clostridium difficile NAP08]
 gi|296428646|gb|EFH14530.1| ribonuclease III [Clostridium difficile NAP07]
          Length = 236

 Score =  166 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 118/226 (52%), Gaps = 5/226 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNH 62
                E  I Y F N+  + +ALTHSS S+  ++    ERLEFLGD +LG++IS  LFN 
Sbjct: 10  NIQRFENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIVISDYLFNE 69

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             +  EGEL+    ++V  ++ S+VA +++L   + +            TSI AD  E++
Sbjct: 70  EANLPEGELTKLRANIVCEDSLSEVANDINLGVHMLLGRGEEATGGRHRTSILADAFEAV 129

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           IAA+YLDGG E A  F+  + +     S K    RD KT LQE           Y++   
Sbjct: 130 IAAIYLDGGFESARQFILHHMENIIYDSRKGNIFRDYKTHLQEVLQGNGENNIWYRLIEE 189

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            GPDH+ RF + V I+      G   SK+ AEQ+AA   LK+  +W
Sbjct: 190 KGPDHNKRFVMEVGINEDVLGIGEGKSKKEAEQLAAKIALKK-KLW 234


>gi|313114998|ref|ZP_07800491.1| ribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622689|gb|EFQ06151.1| ribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 224

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 86/222 (38%), Positives = 117/222 (52%), Gaps = 7/222 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFD 64
            LE  IGY F N  LLE ALTH+S ++  +   +  ERLEFLGD +L ++ +  LF+ + 
Sbjct: 4   QLETIIGYKFKNPELLEIALTHTSYANESRTPVKHNERLEFLGDSVLQIVSADYLFHAYA 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    SLVS     Q A+E+DL  ++R+     +       S+ +D  E+LIA
Sbjct: 64  DRPEGDLTRIRASLVSEGALFQFAQEIDLGEYLRLGRGEERCGGRTRPSVVSDAFEALIA 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           ALYLDGG++VA +F+         +      D KT LQE           Y V   SGPD
Sbjct: 124 ALYLDGGMDVARSFIL----PFITEGKHAEADYKTRLQEIVQQNPEERLSYVVESESGPD 179

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           HD  F V V  +    A+G   SK+AAEQ AA E LK  G+ 
Sbjct: 180 HDKHFVVAVRFNSDRVARGEGRSKKAAEQCAAKEALKLLGVI 221


>gi|225019245|ref|ZP_03708437.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
           DSM 5476]
 gi|224947876|gb|EEG29085.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
           DSM 5476]
          Length = 228

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 112/223 (50%), Gaps = 5/223 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNH 62
              EK IGY F N+ LLE+ALTHSS ++     + ++ ERLEFLGD ++ L+I+  LF +
Sbjct: 2   KNFEKTIGYTFHNQKLLEQALTHSSFTNETGRHHHKNNERLEFLGDSVVSLIIANHLFVN 61

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGEL+    SLV   + ++ A  +DL + + +             S   D  E+L
Sbjct: 62  FPDMPEGELTKLRASLVCDRSLAEFAGRIDLGNQLIMGKGEEHSGGRQRRSNLEDAFEAL 121

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A+YLDGG+E A +FV  +  +     S     D KT LQE           Y +   S
Sbjct: 122 VGAIYLDGGLEAARSFVLGFIPKTLDLNSISRVTDYKTALQEIIQKNPEEKLSYVLVSES 181

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GPDHD  F   V ++      G   SK+ AEQ AA + L+  G
Sbjct: 182 GPDHDKMFEAEVHLNSNVIGTGSGKSKKQAEQNAAKQALELMG 224


>gi|295399780|ref|ZP_06809761.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111708|ref|YP_003990024.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
 gi|294978183|gb|EFG53780.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216809|gb|ADP75413.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
          Length = 246

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 105/225 (46%), Gaps = 5/225 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L+K+IG  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF
Sbjct: 17  KFKELQKKIGIFFTNEKLLIQAFTHSSYVNEHRKRPHEDNERLEFLGDAVLELTVSQYLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EGEL+    ++V   +  + A  L     + +             ++ ADV E
Sbjct: 77  KKFPHMSEGELTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G++    F+ +    +  +       D K++LQE          EY +  
Sbjct: 137 AFIGALYLDKGMDAVMQFLGQTIFPKIDEGAFSHVMDFKSQLQELVQRDGIGVLEYSILE 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GP H+  F   V ++G     G+  SK+ AEQ AA   L++  
Sbjct: 197 EKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQKLK 241


>gi|297530632|ref|YP_003671907.1| ribonuclease III [Geobacillus sp. C56-T3]
 gi|297253884|gb|ADI27330.1| ribonuclease III [Geobacillus sp. C56-T3]
          Length = 246

 Score =  165 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L+K+IG  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF
Sbjct: 17  KFQELQKKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+L+    ++V   +  + A  L     + +             ++ ADV E
Sbjct: 77  QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G++    F++K    +  +       D K++LQE        T EY +  
Sbjct: 137 AFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILE 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H+  F   V ++G     G+  SK+ AEQ AA   L+  
Sbjct: 197 EKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALETL 240


>gi|261419391|ref|YP_003253073.1| ribonuclease III [Geobacillus sp. Y412MC61]
 gi|319766206|ref|YP_004131707.1| ribonuclease III [Geobacillus sp. Y412MC52]
 gi|261375848|gb|ACX78591.1| ribonuclease III [Geobacillus sp. Y412MC61]
 gi|317111072|gb|ADU93564.1| ribonuclease III [Geobacillus sp. Y412MC52]
          Length = 246

 Score =  165 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L+K+IG  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF
Sbjct: 17  KFQELQKKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+L+    ++V   +  + A  L     + +             ++ ADV E
Sbjct: 77  QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G++    F++K    +  +       D K++LQE        T EY +  
Sbjct: 137 AFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILE 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H+  F   V ++G     G+  SK+ AEQ AA   L+  
Sbjct: 197 EKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALETL 240


>gi|78044311|ref|YP_360276.1| ribonuclease III [Carboxydothermus hydrogenoformans Z-2901]
 gi|90101616|sp|Q3AC58|RNC_CARHZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|77996426|gb|ABB15325.1| ribonuclease III [Carboxydothermus hydrogenoformans Z-2901]
          Length = 235

 Score =  165 bits (416), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 117/230 (50%), Gaps = 6/230 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M      +LEK +G+ F N S+L  A+TH S +  + E      ERLEFLGD +L L IS
Sbjct: 1   MDKENLISLEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFIS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F    EG+L+   + LV AE+  ++A +++L  F+R+     K   +   S  A
Sbjct: 61  DYLFRTFPQKSEGDLTKLRSRLVCAESLYELAFKINLDKFLRLGKGEFKAGGNQRMSNLA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPE 174
           + VE++I A+Y D GIE A +F+ + + ++       +  +D KT LQE    +      
Sbjct: 121 NAVEAVIGAVYFDCGIEAAFSFITRLYGEKLKPENLEQLPKDEKTTLQELLQKEKNNVLR 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           Y++    GP H   FT  V I+    A G   SK+ AEQ AA + L+   
Sbjct: 181 YEILLEEGPPHQKIFTAGVIINDKLIATGRGKSKKEAEQEAAKKALELLK 230


>gi|328543513|ref|YP_004303622.1| ribonuclease III [polymorphum gilvum SL003B-26A1]
 gi|326413257|gb|ADZ70320.1| Ribonuclease III [Polymorphum gilvum SL003B-26A1]
          Length = 234

 Score =  164 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 111/224 (49%), Positives = 147/224 (65%), Gaps = 3/224 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHF 63
            TLE R+GY+F +++LL +ALTH+S  ++    + SY+RLEFLGDR+LGL ++T+L  HF
Sbjct: 10  DTLEGRLGYSFQDKALLMQALTHASALNAGGAARGSYQRLEFLGDRVLGLAVATMLHRHF 69

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGEL+ R N +V  ETC+ +A ELDL   +R+S    +      T++ AD+ E++I
Sbjct: 70  PLADEGELARRLNHMVKRETCADIALELDLGEAMRISQSEAQTGGRRKTALLADICEAVI 129

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AA+YLDGG   A  FV + W+ R L      RDAKT LQEWA +K    P Y+VT R GP
Sbjct: 130 AAIYLDGGFPAAEDFVRRLWEPRMLAWSGPLRDAKTTLQEWAQSKGLPAPGYQVTTREGP 189

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           DH P F V V +SG AP +G   SKR AEQ AA  VL+REG+WT
Sbjct: 190 DHAPVFVVAVTVSGYAPGEGRGGSKRIAEQNAAEAVLRREGVWT 233


>gi|138894713|ref|YP_001125166.1| ribonuclease III [Geobacillus thermodenitrificans NG80-2]
 gi|196247668|ref|ZP_03146370.1| Ribonuclease III [Geobacillus sp. G11MC16]
 gi|189043318|sp|A4IM67|RNC_GEOTN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|134266226|gb|ABO66421.1| Ribonuclease III [Geobacillus thermodenitrificans NG80-2]
 gi|196212452|gb|EDY07209.1| Ribonuclease III [Geobacillus sp. G11MC16]
          Length = 246

 Score =  164 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L+K+IG  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF
Sbjct: 17  KFQELQKKIGITFQNEKLLIQAFTHSSYVNEHRRRFHEDNERLEFLGDAVLELTVSQYLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+L+    ++V   +  + A  L     + +             ++ ADV E
Sbjct: 77  QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G++V   F+ +    +  +       D K++LQE        T EY +  
Sbjct: 137 AFIGALYLDQGMDVVLRFLGQTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILE 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H+  F   V ++G     G+  SK+ AEQ AA   L+  
Sbjct: 197 EKGPAHNKEFVARVALNGQELGVGVGRSKKEAEQHAAQMALETL 240


>gi|42521037|ref|NP_966952.1| ribonuclease III, putative [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|225630900|ref|YP_002727691.1| ribonuclease III, putative [Wolbachia sp. wRi]
 gi|225677311|ref|ZP_03788288.1| ribonuclease III, putative [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|81652137|sp|Q73FT3|RNC_WOLPM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807910|sp|C0R4Q8|RNC_WOLWR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|42410778|gb|AAS14886.1| ribonuclease III, putative [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|225590638|gb|EEH11888.1| ribonuclease III, putative [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225592881|gb|ACN95900.1| ribonuclease III, putative [Wolbachia sp. wRi]
          Length = 232

 Score =  164 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 84/228 (36%), Positives = 126/228 (55%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56
           M +L    + K I Y F N ++LE+ALTH S++    ++    YERLEFLGD +L +++S
Sbjct: 1   MKSLN-DAISKIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F   KEG L+ R   LV   T + VA+E+ L SFI +++  R +          
Sbjct: 60  ATLFKLFPEEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCNGGRCNLKNLE 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + +E+LI A+Y+DGG+E    F+ +YW++ A       +D KT LQEW        PEY+
Sbjct: 120 NSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQKNKLPLPEYE 179

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  ++GP H+P FT+ V I           SK+ AEQ AA  +L++ G
Sbjct: 180 LVKQTGPAHNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKIG 227


>gi|99035124|ref|ZP_01314908.1| hypothetical protein Wendoof_01000254 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 234

 Score =  164 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 84/228 (36%), Positives = 126/228 (55%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56
           M +L    + K I Y F N ++LE+ALTH S++    ++    YERLEFLGD +L +++S
Sbjct: 3   MKSLN-DAISKIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVS 61

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F   KEG L+ R   LV   T + VA+E+ L SFI +++  R +          
Sbjct: 62  ATLFKLFPEEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCNGGRCNLKNLE 121

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + +E+LI A+Y+DGG+E    F+ +YW++ A       +D KT LQEW        PEY+
Sbjct: 122 NSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQKNKLPLPEYE 181

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  ++GP H+P FT+ V I           SK+ AEQ AA  +L++ G
Sbjct: 182 LVKQTGPAHNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKIG 229


>gi|310658889|ref|YP_003936610.1| ribonuclease 3 [Clostridium sticklandii DSM 519]
 gi|308825667|emb|CBH21705.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Clostridium
           sticklandii]
          Length = 229

 Score =  164 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 84/230 (36%), Positives = 121/230 (52%), Gaps = 7/230 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M +  Y  L+K+I Y F +  LL++ALTHSS S+ Y++    + ERLEFLGD ILGL+IS
Sbjct: 1   MKSKSY-ELQKKINYEFQDLKLLKEALTHSSYSNEYKKIKNRNNERLEFLGDSILGLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF       EGEL+    ++V   +   +A+ + L  ++ +             SI A
Sbjct: 60  NYLFRLKKELPEGELTKIRAAIVCERSLKDIAKSIHLGEYLYLGKGEESTGGRTRDSILA 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPE 174
           D  E+LIAA+YLDGG   A  FV ++      +   GK  RD KT+LQE           
Sbjct: 120 DATEALIAAIYLDGGFRKATDFVLEHMGDIISQAIQGKIMRDYKTQLQELIQKDNKENII 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           YK+  + GPDHD  F + V +       G+  SK+ AEQ AA + +++E 
Sbjct: 180 YKLVDQLGPDHDKTFKMNVFLGEKLIGTGIGKSKKEAEQEAAKDAMEKEN 229


>gi|317131320|ref|YP_004090634.1| ribonuclease III [Ethanoligenens harbinense YUAN-3]
 gi|315469299|gb|ADU25903.1| ribonuclease III [Ethanoligenens harbinense YUAN-3]
          Length = 226

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 86/224 (38%), Positives = 120/224 (53%), Gaps = 5/224 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFN 61
              LEK +GY FA++SLLE ALTHSS ++  ++      ERLEFLGD +LG++ +  L+ 
Sbjct: 2   LEELEKNLGYTFADKSLLENALTHSSYANEMKKHSCGSNERLEFLGDAVLGIISAEYLYF 61

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H     EGEL+    S+V   +    AR ++L  ++R+            +SI AD  E+
Sbjct: 62  HHTRVPEGELTRLRASMVCERSLQGFARTVELGRWLRLGRGEENTGGRERSSILADAFEA 121

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +IAA+Y+DGG   A  FV ++         +  RRD KTELQE      G   EY +   
Sbjct: 122 VIAAIYIDGGFPAAKRFVTRFADSFFAAHLENGRRDYKTELQEIVQKNHGEKLEYVLVGE 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGPDHD +F V V ++      G   SK+ AEQ+AA E L   G
Sbjct: 182 SGPDHDKQFLVEVHLNNNCIGAGRGGSKKEAEQMAAREALSLMG 225


>gi|323705471|ref|ZP_08117046.1| ribonuclease III [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535373|gb|EGB25149.1| ribonuclease III [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 232

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/232 (34%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIS 56
           M  + RY  LEK +GY F N+ LL+ ALTHSS ++  +    S ERLEFLGD +L ++IS
Sbjct: 1   MELSDRYENLEKNMGYTFNNKKLLKNALTHSSWANESKNFLSSNERLEFLGDSVLSIVIS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ +    +EG LS     +V   + ++ ARE+D+  ++ +             SI A
Sbjct: 61  EYLYKNRTDLEEGYLSKYRAEIVCEPSLARCAREIDIGKYLNIGRGEEMTGGRNRDSILA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPE 174
           D +E+LIAA+YLD  ++     V + +++   +       RD KT+LQE           
Sbjct: 121 DAMEALIAAVYLDSDLKTVSEVVLRLFEKIINEVLSGLIYRDYKTKLQEVTQKMGSERVI 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           YK+    GPDH+  F + V +      +G   SK+ AEQ AA E L + G+ 
Sbjct: 181 YKLIDEYGPDHNKMFVIEVFVGENRLGRGKGRSKKEAEQYAAMEALSKMGLI 232


>gi|56419727|ref|YP_147045.1| ribonuclease III [Geobacillus kaustophilus HTA426]
 gi|81347639|sp|Q5L0Q3|RNC_GEOKA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56379569|dbj|BAD75477.1| dsRNA-specific ribonuclease [Geobacillus kaustophilus HTA426]
          Length = 246

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L+ +IG  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF
Sbjct: 17  KFQELQNKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+L+    ++V   +  + A  L     + +             ++ ADV E
Sbjct: 77  QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G++    F++K    +  +       D K++LQE        T EY +  
Sbjct: 137 AFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILE 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H+  F   V ++G     G+  SK+ AEQ AA   L+  
Sbjct: 197 EKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALETL 240


>gi|220928138|ref|YP_002505047.1| ribonuclease III [Clostridium cellulolyticum H10]
 gi|219998466|gb|ACL75067.1| ribonuclease III [Clostridium cellulolyticum H10]
          Length = 236

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/234 (35%), Positives = 118/234 (50%), Gaps = 10/234 (4%)

Query: 1   MSALRY----STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILG 52
           M+ +RY    S LE  IGY F N+ ++  A+THSS ++  +    +  ERLEFLGD +LG
Sbjct: 1   MAEIRYDNRISELEDIIGYTFKNKDIIFAAVTHSSYANEKKSRKLKYNERLEFLGDSVLG 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L IS  LF    +  EGELSV    +V   + SQ A ++ L  ++ +             
Sbjct: 61  LTISEYLFQKKPNLPEGELSVTRAKIVCENSLSQCATDIGLGKYLLLGKGEELSGGREKI 120

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFG 170
           S+ +D  E+LI ALY+DGG E A +F+ +Y  +        K   D KT+LQE       
Sbjct: 121 SLLSDAFEALIGALYIDGGFETAKSFIYRYMDKIIKSCIEGKLFYDYKTQLQELVQQNGE 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               Y VT + GPDH+  F   V+I+G    +G   SK+ AEQ AA   L    
Sbjct: 181 QQITYSVTDQFGPDHNKTFITEVKINGAIQGRGKGHSKKEAEQNAAKNALNNLK 234


>gi|20807916|ref|NP_623087.1| dsRNA-specific ribonuclease [Thermoanaerobacter tengcongensis MB4]
 gi|22654052|sp|Q8R9W3|RNC_THETN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|20516484|gb|AAM24691.1| dsRNA-specific ribonuclease [Thermoanaerobacter tengcongensis MB4]
          Length = 228

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 122/226 (53%), Gaps = 5/226 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62
            + LE++I Y F +++LL +ALTHSS +H  +    S ERLEFLGD +L L+IS  L+ +
Sbjct: 2   LTYLEQKINYEFKDKTLLLEALTHSSWAHEGKNEKVSNERLEFLGDSVLSLVISEYLYKN 61

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               +EG LS     +V   + ++ AR+++L SF+R+             SI AD +E+L
Sbjct: 62  RKDLEEGSLSKYRAEIVCEPSLARCARKIELGSFLRMGKGEEISGGRDRDSILADAMEAL 121

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +AA+YLDGG+E     +   +K+   +  K    RD KT LQE   +       Y++   
Sbjct: 122 LAAVYLDGGLEAVRRVILDLFKEIIDEVLKGIIYRDYKTRLQEVVQSMEVGKITYELVEE 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            GPDH+  F   V+I  +    G   SK+ +EQ AA E L + GI 
Sbjct: 182 IGPDHNKTFVTQVKIGDVVLGIGQGKSKKESEQAAAMEALSKLGIL 227


>gi|326791395|ref|YP_004309216.1| ribonuclease III [Clostridium lentocellum DSM 5427]
 gi|326542159|gb|ADZ84018.1| ribonuclease III [Clostridium lentocellum DSM 5427]
          Length = 240

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 111/226 (49%), Gaps = 7/226 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
            ++    +++++ Y F N +LLE+ALTHSS ++ ++       ERLEFLGD IL L+IS 
Sbjct: 10  KSIVLDEMQRKLSYTFTNSNLLEEALTHSSYANEHRNERVKDNERLEFLGDAILDLIISE 69

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF       EG+LS    S+V   + +++AR + L  +I +             SI AD
Sbjct: 70  YLFKKHPEMPEGDLSKIRASIVCEASLAKMARFIGLGEYILLGKGEEMTGGRERASILAD 129

Query: 118 VVESLIAALYLDGGIEVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
             E+L  AL+LDGG   A  F+        ++         D KT LQE           
Sbjct: 130 GFEALTGALFLDGGFNEAKCFLTDTLIAQVEQVASLEDLYTDYKTLLQECIQKVSNAPIH 189

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y+V    GPDHD  F V V    ++  +G+  SK+ AEQ AA + L
Sbjct: 190 YEVVGEEGPDHDKYFYVEVYHDTISLGRGIGKSKKEAEQDAAKKAL 235


>gi|306819680|ref|ZP_07453341.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304552246|gb|EFM40176.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 233

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 7/229 (3%)

Query: 1   MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLI 55
           M          +E  IGY F N++ L+ ALTHSS  + ++  +  ERLEFLGD +LGL++
Sbjct: 1   MKEKDRLILEQVENTIGYKFKNKNYLQIALTHSSYVNEHKLTKDNERLEFLGDSVLGLIV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  +F +  S KEGEL+   +++V  ++   +A +L +  +I++    +    +   SI 
Sbjct: 61  SNYIFAYKSSLKEGELTKIRSTIVCEKSLMHIAEKLKIGQYIKLGKGEKISGGAKRASIL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTP 173
           AD VE++IAA+YLD   +    +V  +           K   D K++LQE      G T 
Sbjct: 121 ADAVEAMIAAIYLDSDFDNVSKYVLDWLGDTIKNALDNKKNDDYKSKLQEEVQKVRGRTL 180

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +Y++    GPDH+  FT+ V         G   SK+ AEQ+AA + L++
Sbjct: 181 KYELIAMKGPDHERTFTIGVYCDNKLIGTGKGHSKKEAEQLAAKDALEK 229


>gi|228992577|ref|ZP_04152504.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
 gi|228998625|ref|ZP_04158212.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
 gi|229006125|ref|ZP_04163813.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
 gi|228755201|gb|EEM04558.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
 gi|228761093|gb|EEM10052.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
 gi|228767211|gb|EEM15847.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
          Length = 245

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 110/224 (49%), Gaps = 5/224 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKMFQQKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   + + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAVVCEPSLVRFANELSFGNLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GP H+  F   V ++G+A   G   SK+ AEQ AA+E LK+  
Sbjct: 199 KGPAHNREFVSRVTLNGVALGLGSGKSKKEAEQQAASEALKKLK 242


>gi|152993835|ref|YP_001359556.1| ribonuclease III [Sulfurovum sp. NBC37-1]
 gi|189043369|sp|A6QCJ0|RNC_SULNB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|151425696|dbj|BAF73199.1| ribonuclease III [Sulfurovum sp. NBC37-1]
          Length = 223

 Score =  162 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+   YS LEKR+ Y F ++ L+ +ALTH S    Y  + ERLEFLGD +L L++   LF
Sbjct: 1   MN--DYSQLEKRLNYTFKDKQLIIEALTHKSYKKPY--NNERLEFLGDAVLDLIVGEYLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  + EG LS    SLV+    + +AR++DL S+I +S     +      S+ ++  E
Sbjct: 57  KKFPKSDEGILSKIRASLVNESGFTLLARKIDLGSYIYLSLAEENNNGRDKPSLLSNAFE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YL+ G++ A     K  ++   K       +D KT LQE   A   VTP Y++ 
Sbjct: 117 AIIGAVYLEAGLDTAKEISIKLLEECHPKIDLQSLSKDYKTALQELTQATHAVTPGYEML 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             SGPDH   F + V +     A     SK+ A+Q AA   L+   
Sbjct: 177 GSSGPDHKKEFEIAVTLDNKTIATAKGKSKKDAQQKAAKIALEALK 222


>gi|291165574|gb|EFE27623.1| ribonuclease III [Filifactor alocis ATCC 35896]
          Length = 229

 Score =  162 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 119/227 (52%), Gaps = 8/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M        +K+IGY F +  LL +ALTH+S  +  +       ERLEFLGD ILG+++S
Sbjct: 1   MKE--LKEFQKKIGYTFQDEKLLREALTHTSYINENRNKNLRPNERLEFLGDSILGVVVS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
           T LF       EGELS    S+V  ++   VA+ LD  S+I +             SI A
Sbjct: 59  TYLFEKRKDLPEGELSKIRASIVCEDSLQLVAKRLDAGSYIYMGKGEEMTGGRTRHSILA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPE 174
           D+VE+LIAA+YLDGG++ A  F+  + +    ++ K    +D KT LQE    K   + E
Sbjct: 119 DMVEALIAAIYLDGGMKAASKFIFLFMEDVMKRATKGDMDKDYKTRLQEIVQQKPDRSIE 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           Y+V    GPDH   F V + +     A G   SK+ AE+ AA + L+
Sbjct: 179 YRVIGEKGPDHRKIFVVELLVDKKQVAVGEGYSKKEAEKQAAKKALQ 225


>gi|58698421|ref|ZP_00373332.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58535076|gb|EAL59164.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 232

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 83/227 (36%), Positives = 125/227 (55%), Gaps = 5/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56
           M +L    + K I Y F N ++LE+ALTH S++    ++    YERLEFLGD +L +++S
Sbjct: 1   MKSLN-DAISKIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F   KEG L+ R   LV   T + VA+E+ L SFI +++  R +          
Sbjct: 60  ATLFKLFPEEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCNGGRCNLKNLE 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + +E+LI A+Y+DGG+E    F+ +YW++ A       +D KT LQEW        PEY+
Sbjct: 120 NSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQKNKLPLPEYE 179

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  ++GP H+P FT+ V I           SK+ AEQ AA  +L++ 
Sbjct: 180 LVKQTGPAHNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKI 226


>gi|313673188|ref|YP_004051299.1| rnase iii [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939944|gb|ADR19136.1| RNAse III [Calditerrivibrio nitroreducens DSM 19672]
          Length = 229

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 113/220 (51%), Gaps = 4/220 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +    L + + Y F N+ LL +ALTHSS S+  +   +YERLEFLGD +L L++S  L  
Sbjct: 1   MNLEKLNEILNYNFENKELLIEALTHSSYSYENKLCRNYERLEFLGDAVLQLIVSEYLIF 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG LS      VS E  S++A+++DL +FIR+             SI  D+ ES
Sbjct: 61  KYKDFDEGMLSRYRAYFVSEEFISELAKQIDLGNFIRLGKGELNSGGKDRPSILCDIFES 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++AA+YLDGG   A  F+      +           D K+ELQ+     F   P+YKV  
Sbjct: 121 IVAAMYLDGGYNEARRFIITIASDKIDEVIQQNIFTDYKSELQKLTQKIFESLPDYKVKD 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            +GP+HD  F V + I+      G   SK+ AEQ AA + 
Sbjct: 181 ETGPEHDKTFIVDLYINDRYYCSGSGKSKKKAEQDAAKKA 220


>gi|319957798|ref|YP_004169061.1| rnase iii [Nitratifractor salsuginis DSM 16511]
 gi|319420202|gb|ADV47312.1| RNAse III [Nitratifractor salsuginis DSM 16511]
          Length = 226

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 4/221 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y  LE+R+GY F N  L+ +ALTH S    Y  + ERLEFLGD +L L++   LF+ F 
Sbjct: 3   NYHELERRLGYEFKNPQLIVEALTHKSYKKPY--NNERLEFLGDAVLDLIVGEFLFHKFP 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            + EG LS    SLV+    + +AR +DL  +I +S     +      S+ ++  E++I 
Sbjct: 61  QSDEGVLSKIRASLVNESGFATLARAIDLGRYIYLSPAEENNQGRSKPSLLSNAFEAVIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL+ G+E A + V +   +   +       +D KT LQE   A  GVTP+Y++   SG
Sbjct: 121 AIYLEAGLENARSIVVRLLDETYPRIDLDTLCKDYKTALQELTQATHGVTPDYEMIGSSG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH   F V V++ G   A     SK+AA+Q AA   L++ 
Sbjct: 181 PDHRKEFEVAVKLDGETIASAKGRSKKAAQQKAAEIALQKL 221


>gi|212639596|ref|YP_002316116.1| ribonuclease III [Anoxybacillus flavithermus WK1]
 gi|226735364|sp|B7GGE9|RNC_ANOFW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|212561076|gb|ACJ34131.1| DsRNA-specific ribonuclease [Anoxybacillus flavithermus WK1]
          Length = 238

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 106/233 (45%), Gaps = 9/233 (3%)

Query: 1   MSA----LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILG 52
           MS     +++   +++ G  F N  LL +A THSS  + ++    E  ERLEFLGD +L 
Sbjct: 1   MSKQRPYVKFKQFQEQTGIFFRNEKLLIQAFTHSSYVNEHRKRLHEDNERLEFLGDAVLE 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L +S  LF  F    EGEL+    ++V   +    A  L     + +             
Sbjct: 61  LTVSQYLFEQFPQMSEGELTKMRAAIVCEPSLVTFAHALSFGDLVLLGKGEELTGGRMRP 120

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGV 171
           S+ ADV E+ I ALYLD GIE    F+ K    +  +       D K++LQE+       
Sbjct: 121 SLLADVFEAFIGALYLDQGIEAVVQFLGKTIFPKIREGAFSHVMDYKSQLQEFVQRDGSG 180

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             EYK+    GP H+  F   V ++G     G+  SK+ AEQ AA   L +  
Sbjct: 181 VLEYKILQERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAAQMALAKLK 233


>gi|23098981|ref|NP_692447.1| ribonuclease III [Oceanobacillus iheyensis HTE831]
 gi|38372423|sp|Q8ER05|RNC_OCEIH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|22777209|dbj|BAC13482.1| ribonuclease III [Oceanobacillus iheyensis HTE831]
          Length = 228

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 5/226 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
           +    LE+ +G +F  ++LL++A THSS  + +++      ERLEFLGD +L L +S  L
Sbjct: 1   MDIRPLEEHLGISFQQKALLKEAFTHSSYVNEHRKQRLSDNERLEFLGDAVLELAVSQYL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + +     EGE++    ++V   +    A EL+   F+R+    ++       +I AD  
Sbjct: 61  YRNNKDMPEGEMTKLRAAIVCEPSLKNFAEELEFGKFLRLGKGEQQTGGRERPAILADAF 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+ + ALYLD G +    F++ +   +    +     D K++LQE+         EY++ 
Sbjct: 121 EAFLGALYLDQGFDNVLDFLNIHVFPKLTTGAFSHAMDYKSQLQEFVQQHKDQKIEYRII 180

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GP H+  F   V I   A   G   +K+ AEQ AA   L    
Sbjct: 181 EEKGPSHNKEFVAEVVIQEKAAGIGTGRTKKEAEQRAAKNALDSIN 226


>gi|164688568|ref|ZP_02212596.1| hypothetical protein CLOBAR_02213 [Clostridium bartlettii DSM
           16795]
 gi|164602981|gb|EDQ96446.1| hypothetical protein CLOBAR_02213 [Clostridium bartlettii DSM
           16795]
          Length = 233

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLF 60
           +      E++I Y F N+  + +ALTHSS S+  +     ERLEFLGD +L ++IS  LF
Sbjct: 8   SSNIELFEQKINYEFKNKEYILEALTHSSYSNENKNYPFNERLEFLGDSVLSIVISDYLF 67

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EGEL+    ++V  E+ S+V++ + L  ++ +             SI AD +E
Sbjct: 68  KKETKLPEGELTKIRANIVCEESLSEVSKNIHLGKYMLLGKGEEATGGRERISILADALE 127

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLDGGI+ A  F+    ++    S K    RD KT LQE   +       YK+ 
Sbjct: 128 AVIAAIYLDGGIKCAREFILTNMEKIINDSIKGKIFRDYKTCLQEVLQSNGENNIWYKLI 187

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              GPDH+ RF + V I+      G   SK+ AEQVAA   L +
Sbjct: 188 EEKGPDHNKRFVMEVGINDTVLGVGEGKSKKDAEQVAAKCALDK 231


>gi|150390513|ref|YP_001320562.1| ribonuclease III [Alkaliphilus metalliredigens QYMF]
 gi|149950375|gb|ABR48903.1| Ribonuclease III [Alkaliphilus metalliredigens QYMF]
          Length = 239

 Score =  160 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 116/223 (52%), Gaps = 6/223 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHF 63
             E+ I Y F ++ LL++ALTHSS ++  +    +  ERLEFLGD +LG++IS  +F  +
Sbjct: 13  DFEEMIQYQFKDKQLLKEALTHSSYANESKVKKIKHNERLEFLGDSVLGIIISDYIFKKY 72

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+    ++V        A +++L  F+R+             SI AD  E+LI
Sbjct: 73  THLPEGDLTKVRANVVCEPALGSCATKINLGGFLRLGRGEEVSGGRQRESILADAFEALI 132

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            ALYLDGG+ +A TFV  +      ++ K    RD KT LQE   +K      Y+V   S
Sbjct: 133 GALYLDGGMVIAQTFVLNHLIDSVEQATKGSLFRDYKTYLQELLQSKHSERITYQVIKES 192

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GPDH   F V V +       GM  SK+ AEQ AA E +++  
Sbjct: 193 GPDHSKIFDVEVLLGEQLLGHGMGKSKKEAEQRAAKEAVEKIK 235


>gi|319789592|ref|YP_004151225.1| ribonuclease III [Thermovibrio ammonificans HB-1]
 gi|317114094|gb|ADU96584.1| ribonuclease III [Thermovibrio ammonificans HB-1]
          Length = 236

 Score =  160 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 6/227 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH 62
           +   LE+ +GY+F ++ LL++AL H S +      E+YE LEFLGD ++GL++S  L   
Sbjct: 6   KLVALERLLGYSFKDKELLKRALIHRSFAFEKDTGENYEVLEFLGDAVIGLIVSEELIKR 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGELS     LVS  + S++AR ++L  F+ +    ++       SI  DV ES+
Sbjct: 66  FPEKSEGELSQIRAFLVSEPSLSKLARTINLGQFLYLGKGEKRTGGREKDSILCDVFESV 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTF 179
             ALYLD G E A       + ++  +  +     +D K+ LQE    ++ V P+Y+V  
Sbjct: 126 FGALYLDAGFEKAKEIFKNKFLKKLWEILENAVTYKDFKSYLQEITQREYKVLPKYRVVK 185

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
             GP+HD  FTV  +++ +    G   SK+AAEQ AA E+LK  G+ 
Sbjct: 186 AEGPEHDKTFTVECQVNDIT-TYGKGKSKKAAEQDAAREMLKALGVI 231


>gi|282892110|ref|ZP_06300585.1| hypothetical protein pah_c207o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498005|gb|EFB40349.1| hypothetical protein pah_c207o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 236

 Score =  160 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/234 (35%), Positives = 118/234 (50%), Gaps = 9/234 (3%)

Query: 1   MSALRY-----STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILG 52
           M AL       S +E R+GY F +R LL  A  H S  +  +E     ERLEFLGD +LG
Sbjct: 1   MKALDLLAQNISNIELRLGYKFQDRDLLALAFVHRSFINENREIHEHNERLEFLGDSVLG 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           LLI+  L+ +  S  EGELS   + LV A +C     +LDL  F+ +    R +      
Sbjct: 61  LLIADYLYRYLPSTPEGELSYLKSRLVEASSCVTYIHKLDLEQFLLLGRGERMNDGRGRE 120

Query: 113 SIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
           SI AD++E++I A+YLDGG+E A       +  +         R+ K  LQ++   K+  
Sbjct: 121 SILADLLEAIIGAVYLDGGLESAKAFLFKNFSTEIEAILKTPVRNWKALLQDYCQKKYQT 180

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           TP Y V    GPDH   F + V ++     +G   SK+ A+Q AA + L +  I
Sbjct: 181 TPSYHVIDEKGPDHSKTFKISVFLNDEEVGKGEGGSKKEAQQKAAEDALSKMDI 234


>gi|118587961|ref|ZP_01545371.1| Ribonuclease III [Stappia aggregata IAM 12614]
 gi|118439583|gb|EAV46214.1| Ribonuclease III [Stappia aggregata IAM 12614]
          Length = 236

 Score =  160 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 108/224 (48%), Positives = 143/224 (63%), Gaps = 3/224 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            S L+  + Y F +  LL  ALTH+S    S +   SY+RLEFLGDR+LGL+I+++L  H
Sbjct: 11  ISALKNALQYEFRDLELLRVALTHASALPPSETVAGSYQRLEFLGDRVLGLVIASMLHKH 70

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A EGEL+ RFN +V  ETC+++A+EL +   +R+     +      T++ AD+ ES+
Sbjct: 71  FPRADEGELARRFNHMVKRETCAEIAQELGVGDAMRIGLAEAQTGGRKKTALLADICESV 130

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLDGG E A +F+ + W+ R L      RDAKT LQEWA +K   TP Y VT R G
Sbjct: 131 IAAIYLDGGFEAAESFITRLWEPRMLSWSGPLRDAKTTLQEWAQSKSLPTPRYDVTSRDG 190

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           PDH P FTV V + GL P +G   SKR AEQ AA  VL+REG+W
Sbjct: 191 PDHAPNFTVSVTVQGLPPGEGKGGSKRIAEQNAAEAVLRREGVW 234


>gi|116628032|ref|YP_820651.1| ribonuclease III [Streptococcus thermophilus LMD-9]
 gi|122267372|sp|Q03K17|RNC_STRTD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116101309|gb|ABJ66455.1| RNAse III [Streptococcus thermophilus LMD-9]
 gi|312278628|gb|ADQ63285.1| Ribonuclease 3 [Streptococcus thermophilus ND03]
          Length = 229

 Score =  160 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 112/229 (48%), Gaps = 6/229 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+ L    LE+  G  F+ + LLE A TH+S ++ ++       ERLEFLGD  L L+IS
Sbjct: 1   MNQLE-QKLEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+N + +  EGE+S   +++V  E+ +   +      +IR+     K       +I  
Sbjct: 60  VYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD G+     F+++    +  K +     D KT LQE       V   Y
Sbjct: 120 DLWEAFLGALYLDQGLPAVEKFLNQVMIPQVEKGNFDRVIDYKTALQERLQVNGKVDITY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            V   SGP H   FT+ V + G   + G   SK+ AEQ AA   L++ G
Sbjct: 180 TVIDESGPAHAKEFTMQVAVDGKELSTGFGKSKKLAEQAAAKSALEQLG 228


>gi|158320491|ref|YP_001512998.1| ribonuclease III [Alkaliphilus oremlandii OhILAs]
 gi|158140690|gb|ABW19002.1| Ribonuclease III [Alkaliphilus oremlandii OhILAs]
          Length = 241

 Score =  160 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 8/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M  ++    +K IGY F N S++ +ALTHSS ++ Y++    + ERLEFLGD +LG+++S
Sbjct: 8   MEQIK--EFQKIIGYQFKNLSIINEALTHSSYTNEYRKKQVQNNERLEFLGDSVLGIVVS 65

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++  +    EGEL+    ++V   +    A+E+ L  ++ +             SI A
Sbjct: 66  EYIYLKYKDLPEGELTKIRANVVCEPSLGNQAKEIKLGQYLLLGKGEEATGGRDRVSILA 125

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPE 174
           D  E++I ALYLDGGI VAG F+     +       G   RD KT+LQE   +K+     
Sbjct: 126 DAFEAVIGALYLDGGIAVAGKFILDMLTRSIELAIEGNLFRDYKTDLQEILQSKYDEKIS 185

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           YKV    GPDH+  F V + +   +   G   SK+ AEQ AA   LK+
Sbjct: 186 YKVVSEVGPDHNKTFEVEILLGEKSLGMGEGKSKKEAEQRAAKSALKK 233


>gi|319407031|emb|CBI80668.1| ribonuclease III [Bartonella sp. 1-1C]
          Length = 227

 Score =  160 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 112/226 (49%), Positives = 146/226 (64%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LEK  G++F +   L++ALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 1   MEHQIIDQLEKLTGHSFKDADRLKRALTHSSVQSSEQGNYERLEFLGDRVLGLLIAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +A E+ L   + V  +++      + +I ADV+E
Sbjct: 61  QIFPQASEGELSVRLNGLVNAQTCADIALEMGLPDMVHVGCEMKNLEGRRLVNIYADVIE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG+E     + +YW  RA K    RRD+KTELQEWAH +    P Y+V  R
Sbjct: 121 ALIAVIYLDGGLESVRPVIQRYWHDRAKKMNAGRRDSKTELQEWAHTQDSAQPHYQVVQR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            GPDHDP F V V I G AP  G   SKR AE+ AA  +L+REGIW
Sbjct: 181 YGPDHDPVFMVEVSICGYAPEIGRGSSKRQAERDAAERILRREGIW 226


>gi|319405458|emb|CBI79077.1| ribonuclease III [Bartonella sp. AR 15-3]
          Length = 235

 Score =  160 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 110/226 (48%), Positives = 147/226 (65%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LEK  G++F +   L++ALTH+S+  S   +YERLEFLGDR+LGLLI+ +L+
Sbjct: 1   MKYHVIDQLEKLTGHSFKDVDRLKRALTHASVQSSENGNYERLEFLGDRVLGLLIAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +A E+ L+  + V  +++      + ++ ADV+E
Sbjct: 61  KIFPQASEGELSVRLNGLVNAQTCADIALEMGLSDMVHVGCEMKNLEGRRLANVYADVIE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG+E     + +YW+ RA K    RRDAKTELQEWAH +    P Y+V  R
Sbjct: 121 ALIAVIYLDGGLESVRPVIQRYWQDRAKKMNAGRRDAKTELQEWAHTQDNAQPHYQVVQR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            GPDHDP F V V I G AP  G   SKR AE+ AA  +L+REGIW
Sbjct: 181 YGPDHDPIFIVEVSICGYAPEIGRGSSKRQAERDAAERILRREGIW 226


>gi|307946585|ref|ZP_07661920.1| ribonuclease III [Roseibium sp. TrichSKD4]
 gi|307770249|gb|EFO29475.1| ribonuclease III [Roseibium sp. TrichSKD4]
          Length = 235

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 103/224 (45%), Positives = 143/224 (63%), Gaps = 3/224 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH 62
              L +R+ Y F +  L+ KALTH+S         +SY+RLEFLGDR+LGL+++T+L  +
Sbjct: 10  LRQLSERLHYTFKDEKLIRKALTHASALEPGEGDDQSYQRLEFLGDRVLGLVVATMLHKN 69

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A EGEL+ RFN +V  ETC+++A+EL+L   +R+     +      T++ AD+ E++
Sbjct: 70  FPKADEGELARRFNHMVKRETCAEIAQELNLGDAMRIGHSEAQTGGRKKTALLADICEAV 129

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLDGG + A  F+ ++WK+R L      RDAKT LQEWA +K   TP Y+V  R G
Sbjct: 130 IAAIYLDGGFDAATAFIQRFWKKRMLSWTGPLRDAKTTLQEWAQSKSLPTPFYEVISRDG 189

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           PDH P F V V + GL   +G   SKR AEQ AA  VL+REG+W
Sbjct: 190 PDHAPIFVVAVAVKGLENGEGKGGSKRLAEQNAAEAVLRREGVW 233


>gi|187933552|ref|YP_001885438.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B]
 gi|238691613|sp|B2TJ22|RNC_CLOBB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|187721705|gb|ACD22926.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B]
          Length = 232

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/227 (35%), Positives = 123/227 (54%), Gaps = 4/227 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58
           M+  +++ +E R+G  F N SL++ ALTHSS  + +++    ERLEFLGD +L L I+  
Sbjct: 1   MNRYKFNDIENRLGVYFNNPSLIKTALTHSSFGNQFKDAKYNERLEFLGDSVLQLCITEY 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LFN F    EGEL+   + +V   +  ++A++L L  +IR+S            SIQAD 
Sbjct: 61  LFNKFKDKSEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMSKGEELTGGRERMSIQADA 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           VE++IAA+YLD GI     F+  ++++      + +   D KT+LQE       +  +Y+
Sbjct: 121 VEAVIAAVYLDKGIGFVNDFILLHFEEMINKAINNEIVLDFKTKLQELLQKDGEILIQYE 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GP H  +F   V I+      G   SK+ AEQ AA E LKR 
Sbjct: 181 LVKYEGPPHRRKFFTNVIINEKVMGIGEGYSKKEAEQNAAKEALKRL 227


>gi|319404018|emb|CBI77606.1| ribonuclease III [Bartonella rochalimae ATCC BAA-1498]
          Length = 227

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 113/226 (50%), Positives = 146/226 (64%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LEK  G++F +   L++ALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 1   MEHQIIDQLEKLTGHSFKDADRLKRALTHSSVQSSEQGNYERLEFLGDRVLGLLIAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +A E+ L   + V  +++      + +I ADV+E
Sbjct: 61  QIFPQASEGELSVRLNGLVNAQTCADIALEMGLPDMVHVGCEMKNLEGRRLVNIYADVIE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG+E     + +YW  RA K    RRDAKTELQEWAH +    P Y+V  R
Sbjct: 121 ALIAVIYLDGGLESVRPVIQRYWHDRAQKMNAGRRDAKTELQEWAHTQDSAQPYYQVVQR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            GPDHDP F V V I G AP  G   SKR AE+ AA  +L+REGIW
Sbjct: 181 YGPDHDPVFMVEVSICGYAPEIGRGSSKRQAERDAAERILRREGIW 226


>gi|307245400|ref|ZP_07527488.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306853741|gb|EFM85958.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
          Length = 243

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++GY F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 18  MNNMQLERLQKKLGYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 75  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V 
Sbjct: 135 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240


>gi|307256562|ref|ZP_07538343.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306864972|gb|EFM96874.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 243

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++GY F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 18  MNNMQLERLQKKLGYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 75  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V 
Sbjct: 135 AIIAAIYLDAGMDKAIAQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240


>gi|169342696|ref|ZP_02863737.1| ribonuclease III [Clostridium perfringens C str. JGS1495]
 gi|169299202|gb|EDS81272.1| ribonuclease III [Clostridium perfringens C str. JGS1495]
          Length = 237

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 82/228 (35%), Positives = 121/228 (53%), Gaps = 4/228 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58
           M  +    +EK IG  F N+ +L  ALTHSS ++ +++    ERLEFLGD +L L ++  
Sbjct: 1   MKDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKY 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LFN++    EGEL+     +V   +  +V++ L L  +IR+S           TSIQAD 
Sbjct: 61  LFNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADA 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +E++IAA+YLD GIEVA  F+ + +K       + +   D KT LQE       V   Y 
Sbjct: 121 LEAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYN 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +    GP H  +F   + I+     QG+  SK+ +EQ AA   L+R G
Sbjct: 181 LVKHEGPPHRRKFFTDLLINNEVMGQGVGFSKKESEQNAAKAALQRLG 228


>gi|188589361|ref|YP_001920585.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43]
 gi|251778911|ref|ZP_04821831.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|238689672|sp|B2V4D6|RNC_CLOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|188499642|gb|ACD52778.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43]
 gi|243083226|gb|EES49116.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 232

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 81/227 (35%), Positives = 123/227 (54%), Gaps = 4/227 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58
           M+  +++ +E R+G  F N SL++ ALTHSS  + +++    ERLEFLGD +L L I+  
Sbjct: 1   MNRYKFNDIENRLGVYFNNPSLIKTALTHSSFGNQFKDAKYNERLEFLGDSVLQLCITEY 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LFN F    EGEL+   + +V   +  ++A++L L  +IR+S            SIQAD 
Sbjct: 61  LFNKFKDKSEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMSKGEELTGGRERMSIQADA 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           VE++IAA+YLD GI     F+  ++++      + +   D KT+LQE       +  +Y+
Sbjct: 121 VEAVIAAVYLDKGIGFVNDFILLHFEEMINKAINNEIVLDFKTKLQELLQKDGEILIQYE 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GP H  +F   V I+      G   SK+ AEQ AA E LKR 
Sbjct: 181 LLKYEGPPHRRKFFTNVIINEKVMGIGEGYSKKEAEQNAAKEALKRL 227


>gi|309389054|gb|ADO76934.1| RNAse III [Halanaerobium praevalens DSM 2228]
          Length = 237

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57
           +  +    EK +   F N+ LLE+ALTH S  +  +    +  ERLEFLGD +L L IST
Sbjct: 6   NKRKTLKFEKSLDLNFNNKFLLERALTHKSYPNENRHLNLKDNERLEFLGDSVLSLSIST 65

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            +FN F    EG+L+     +VSA   ++ A+ ++L  ++ +             SI AD
Sbjct: 66  YIFNKFSDFPEGDLAKMRAVIVSAPILAEAAKRINLGQYLFLGKGEEMTGGRERDSILAD 125

Query: 118 VVESLIAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            +E++  ALYLD   +V   F+ +        + +G   +D KT LQE         PEY
Sbjct: 126 TMEAIFGALYLDQSFKVVSDFILELLKVDIINVAAGNHIQDYKTMLQEVIQDMGNFRPEY 185

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +V    GPDH+  F V V+++  +   G   SK+ AEQ AA   L + 
Sbjct: 186 EVIDEEGPDHNKTFIVAVKMNEESLGSGQGSSKKEAEQEAAKVALDKL 233


>gi|240850197|ref|YP_002971590.1| ribonuclease III [Bartonella grahamii as4aup]
 gi|240267320|gb|ACS50908.1| ribonuclease III [Bartonella grahamii as4aup]
          Length = 235

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 119/226 (52%), Positives = 151/226 (66%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  L    L K  G+ F +   L+KALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 1   MKRLMIDQLFKLTGHRFKDEERLKKALTHSSVQDSEQGNYERLEFLGDRVLGLLIAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +ARE+ L   IRV  +++      + ++ ADVVE
Sbjct: 61  QLFPQASEGELSVRLNHLVNAQTCADIAREMRLPDMIRVGFEMKNFEGRRLINMHADVVE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG+E    F+ KYW  RA K    RRDAKTELQEWAH +    P Y+V  R
Sbjct: 121 ALIAVIYLDGGLESVRPFIQKYWHSRAKKMDAGRRDAKTELQEWAHIQGNAQPHYQVIKR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDP F V V ISG A   G   SKR AE++AA ++L+REG+W
Sbjct: 181 SGPDHDPVFMVEVSISGFASEIGQGSSKRYAERMAAEKILRREGVW 226


>gi|149183216|ref|ZP_01861662.1| ribonuclease III [Bacillus sp. SG-1]
 gi|148849081|gb|EDL63285.1| ribonuclease III [Bacillus sp. SG-1]
          Length = 249

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 5/225 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   +++    F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  L+
Sbjct: 19  KFKEFQRKHNIKFNNEKLLRQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTVSQFLY 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EGEL+    ++V   +    A EL     + +             ++ ADV E
Sbjct: 79  KKYPTMSEGELTKLRAAIVCEPSLVTFANELKFGELVLLGKGEELTGGRERPALLADVFE 138

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G+E   + +++    +          D K++LQE        T EY +  
Sbjct: 139 AFIGALYLDQGLEPVLSILEENVYPKINSGAFSHVMDFKSQLQELVQRDSAGTIEYGILQ 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GP H+  F   V ++G     G   SK+ AEQ AA   L++  
Sbjct: 199 EKGPAHNREFVSRVCLNGEELGIGTGRSKKEAEQHAAQMALEKLK 243


>gi|55821300|ref|YP_139742.1| ribonuclease III [Streptococcus thermophilus LMG 18311]
 gi|55823213|ref|YP_141654.1| ribonuclease III [Streptococcus thermophilus CNRZ1066]
 gi|81559233|sp|Q5LZ68|RNC_STRT1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81560422|sp|Q5M3S3|RNC_STRT2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|55737285|gb|AAV60927.1| ribonuclease III [Streptococcus thermophilus LMG 18311]
 gi|55739198|gb|AAV62839.1| ribonuclease III [Streptococcus thermophilus CNRZ1066]
          Length = 237

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 113/229 (49%), Gaps = 6/229 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+ L    LE+  G  F+ + LLE A TH+S ++ ++       ERLEFLGD  L L+IS
Sbjct: 9   MNQLE-QKLEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 67

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+N + +  EGE+S   +++V  E+ +   +      +IR+     K       +I  
Sbjct: 68  VYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILG 127

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD G+     F+++    +  K +     D KT LQE       V   Y
Sbjct: 128 DLWEAFLGALYLDQGLPAVEKFLNQVMIPQVEKGNFDRVIDYKTALQERLQVNGKVDITY 187

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            V   SGP H   FT+ V + G   + G+  SK+ AEQ AA   L++ G
Sbjct: 188 TVIDESGPAHAKEFTMQVAVDGKELSTGLGKSKKLAEQAAAKSALEQLG 236


>gi|315122353|ref|YP_004062842.1| ribonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495755|gb|ADR52354.1| ribonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 232

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 169/225 (75%), Positives = 200/225 (88%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +L+ S LE+RIGY F+N+ LL+KALTHSSI HS QE+YERLEFLGDR+LG+LIS LLF++
Sbjct: 8   SLKLSALERRIGYTFSNKYLLKKALTHSSICHSPQENYERLEFLGDRVLGILISKLLFDY 67

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           FDSAKEGELS+RFNSLVSAETCSQVA+EL+L SFI VSSDLR +VC F+  IQADVVESL
Sbjct: 68  FDSAKEGELSIRFNSLVSAETCSQVAKELELDSFIYVSSDLRMEVCKFVKGIQADVVESL 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAALYLDGGIE A +FV KYWK+R LK+G+FRRDAKTELQEWAHAKF VTP YK+  RSG
Sbjct: 128 IAALYLDGGIESASSFVTKYWKKRVLKNGEFRRDAKTELQEWAHAKFRVTPTYKIMLRSG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           PDHDPRFTV+V++ GL   +G+DCSKR+AEQ+AAAE+L+REGIW+
Sbjct: 188 PDHDPRFTVMVDVLGLYSGKGIDCSKRSAEQMAAAEILRREGIWS 232


>gi|331082011|ref|ZP_08331139.1| ribonuclease III [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330405606|gb|EGG85136.1| ribonuclease III [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 236

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 118/226 (52%), Gaps = 5/226 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIST 57
           ++ ++  LEK+IGY F N  LL  ALTHSS ++ +    +E+ ERLEFLGD +L L  S 
Sbjct: 3   NSKKFLELEKKIGYEFENFDLLVNALTHSSYANEHHIAYKENNERLEFLGDAVLELTSSE 62

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  +    EG+L+ +  S+V   T +  A+E+ L  ++ +             SI +D
Sbjct: 63  FLFYQYADLPEGKLTKKRASIVCEPTLALCAKEISLGDYLLLGKGEEATGGRNRNSIISD 122

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+YLDGG   A  FV KY         +   D+KT LQE   A++    +Y +
Sbjct: 123 AMEALIGAIYLDGGFANAKEFVHKYILNDIENK-QLFYDSKTTLQEIVQAQYEDDVKYVL 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDH+  F V   +      +G   +K+AAEQ AA   +K+ 
Sbjct: 182 VKEEGPDHNKSFYVEALLGDKKLGEGCGHTKKAAEQQAAYCAIKKL 227


>gi|18310700|ref|NP_562634.1| ribonuclease III [Clostridium perfringens str. 13]
 gi|168210649|ref|ZP_02636274.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626]
 gi|168214195|ref|ZP_02639820.1| ribonuclease III [Clostridium perfringens CPE str. F4969]
 gi|168217005|ref|ZP_02642630.1| ribonuclease III [Clostridium perfringens NCTC 8239]
 gi|182625857|ref|ZP_02953623.1| ribonuclease III [Clostridium perfringens D str. JGS1721]
 gi|22654058|sp|Q8XJN8|RNC_CLOPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|18145381|dbj|BAB81424.1| ribonuclease III [Clostridium perfringens str. 13]
 gi|170711273|gb|EDT23455.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626]
 gi|170714262|gb|EDT26444.1| ribonuclease III [Clostridium perfringens CPE str. F4969]
 gi|177908891|gb|EDT71383.1| ribonuclease III [Clostridium perfringens D str. JGS1721]
 gi|182380899|gb|EDT78378.1| ribonuclease III [Clostridium perfringens NCTC 8239]
          Length = 237

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 82/228 (35%), Positives = 121/228 (53%), Gaps = 4/228 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58
           M  +    +EK IG  F N+ +L  ALTHSS ++ +++    ERLEFLGD +L L ++  
Sbjct: 1   MKDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKY 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LFN++    EGEL+     +V   +  +V++ L L  +IR+S           TSIQAD 
Sbjct: 61  LFNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADA 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +E++IAA+YLD GIEVA  F+ + +K       + +   D KT LQE       V   Y 
Sbjct: 121 LEAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYN 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +    GP H  +F   + I+     QG+  SK+ +EQ AA   L+R G
Sbjct: 181 LVKHEGPPHRRKFFTDLLINNEIMGQGVGFSKKESEQNAAKAALQRLG 228


>gi|167745647|ref|ZP_02417774.1| hypothetical protein ANACAC_00339 [Anaerostipes caccae DSM 14662]
 gi|317472750|ref|ZP_07932063.1| ribonuclease III [Anaerostipes sp. 3_2_56FAA]
 gi|167654959|gb|EDR99088.1| hypothetical protein ANACAC_00339 [Anaerostipes caccae DSM 14662]
 gi|316899776|gb|EFV21777.1| ribonuclease III [Anaerostipes sp. 3_2_56FAA]
          Length = 231

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 80/231 (34%), Positives = 117/231 (50%), Gaps = 6/231 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+       +K+I   F ++ LL  ALTHSS ++  +    +  ERLEFLGD +L L++S
Sbjct: 1   MNQSNQEDFQKKIKIRFHDKKLLTTALTHSSYANERKLSRGKDNERLEFLGDAVLELIMS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF+ +    EG+L+    SLV   T +  A++L L  ++ +S            SI +
Sbjct: 61  DYLFHTYKDEPEGKLTKMRASLVCEPTLAFCAKDLSLGDYLLLSKGEDLTGGRERDSILS 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E++I A+YLD G E A  FV+ Y  Q   +   F  DAKT LQE   +       Y+
Sbjct: 121 DAFEAVIGAVYLDQGFEEARKFVETYLLQDVDEKVLFY-DAKTSLQELVQSFSKQPLTYE 179

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK-REGIW 226
           +    GPDH   FTV   +       G   SK++AEQ AA E +K ++GI 
Sbjct: 180 LIKEDGPDHQKTFTVEARLGEKVIGTGTGRSKKSAEQTAAYEAMKHKDGIL 230


>gi|121602768|ref|YP_988789.1| ribonuclease III [Bartonella bacilliformis KC583]
 gi|189043293|sp|A1US36|RNC_BARBK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|120614945|gb|ABM45546.1| ribonuclease III [Bartonella bacilliformis KC583]
          Length = 235

 Score =  158 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 112/226 (49%), Positives = 151/226 (66%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       L+K  G++F N  LL+KALTHSS+  S Q +YERLEFLGDR+LGLL++ +L+
Sbjct: 1   MKHQTIDQLKKLTGHSFKNEDLLKKALTHSSVQRSEQGNYERLEFLGDRVLGLLVAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +ARE+ L   + V  +++      + ++ ADVVE
Sbjct: 61  QFFPQASEGELSVRLNGLVNAQTCADIAREIGLPDMVHVGCEMKNLEGRRLANMHADVVE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG++    F+ +YW+ RA K    RRDAKTELQEWAH + GV P+Y+V  R
Sbjct: 121 ALIAVIYLDGGLKSVRPFIQRYWQDRAKKIDASRRDAKTELQEWAHTQNGVQPQYRVIKR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            G DHDP F V V + G     G   SKR AE+ AA ++L+REG+W
Sbjct: 181 CGLDHDPVFVVEVSVPGFVSEVGEGGSKRHAERAAAEKILRREGMW 226


>gi|206603814|gb|EDZ40294.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG']
          Length = 247

 Score =  158 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 8/231 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLL 54
           M   R  S LE  +GY F    LLE+A TH S  +  +      + ERLEFLGD +LGL+
Sbjct: 1   MKPHRELSELEDLLGYRFRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLV 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           I+  L   +    EG LS     +VS  T + V+R L +  F+ +            +S+
Sbjct: 61  IAEYLMVTYPKYPEGVLSKFKGRIVSEPTLASVSRVLGIGGFLLIGKGEELTQGREKSSL 120

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVT 172
            AD +E++IAA+YLD G++ A TF+  +++    +       +D KT+LQE+   +    
Sbjct: 121 LADAMEAVIAAIYLDSGLDAARTFIIGHFRSVIEQTVQEDSIQDYKTDLQEYCQRELETL 180

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P Y+V  + GPDH   F V V I G    +G   SK+ AEQ AA + L R 
Sbjct: 181 PVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGRSKKEAEQKAAKDALSRL 231


>gi|124515064|gb|EAY56575.1| ribonuclease III [Leptospirillum rubarum]
          Length = 247

 Score =  158 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLL 59
             S LE R+ Y F    LLE+A TH S  +  +      + ERLEFLGD +LGL+++  L
Sbjct: 6   DLSELEDRLRYRFRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLVVAEYL 65

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              +    EG LS     +VS  T + V+R L +  F+ +            +S+ AD +
Sbjct: 66  MVTYPKYPEGILSKFKGRVVSEPTLASVSRALGIGGFLLIGKGEELTQGREKSSLLADAM 125

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++IAA+YLD G++ A TF+  +++    +       +D KT+LQE+   +    P Y+V
Sbjct: 126 EAVIAAIYLDSGLDAARTFIIGHFRSVIEQTVHEDSIQDYKTDLQEYCQRELETLPVYQV 185

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             + GPDH   F V V I G    +G   SK+ AEQ AA + L R 
Sbjct: 186 MDQRGPDHQKEFDVAVLIRGKIYGEGSGKSKKEAEQKAAKDALSRL 231


>gi|163867992|ref|YP_001609196.1| ribonuclease III [Bartonella tribocorum CIP 105476]
 gi|189043294|sp|A9IRN0|RNC_BART1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|161017643|emb|CAK01201.1| ribonuclease III [Bartonella tribocorum CIP 105476]
          Length = 235

 Score =  157 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 117/226 (51%), Positives = 152/226 (67%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  L    L K  G+ F +   L++ALTH+S+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 1   MRRLMIDQLFKLTGHRFKDEEKLKRALTHASVQDSEQGNYERLEFLGDRVLGLLIAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +ARE+ L   I+V  ++R      + ++ ADVVE
Sbjct: 61  QLFPQASEGELSVRLNHLVNAQTCADIAREMRLPDMIQVGFEMRNFEGRRLINMHADVVE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG+E    F+ KYW+ RA K    RRDAKTELQEWAH +    P Y+V  R
Sbjct: 121 ALIAVMYLDGGLESVRPFIQKYWQSRAKKMDAGRRDAKTELQEWAHIQGDAQPHYQVIKR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDP F V V ISG A   G   SKR AE++AA ++L+REG+W
Sbjct: 181 SGPDHDPVFMVEVSISGFASEIGQGSSKRNAERMAAEKILRREGVW 226


>gi|304316939|ref|YP_003852084.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778441|gb|ADL69000.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 232

 Score =  157 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 81/231 (35%), Positives = 121/231 (52%), Gaps = 6/231 (2%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIS 56
           M  + +Y  LEK IGY F N+ LL+ AL HSS ++  +    S ERLEFLGD +L ++IS
Sbjct: 1   METSEKYENLEKNIGYVFNNKKLLKNALAHSSWANESKNIGISNERLEFLGDSVLSIIIS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+      +EG LS   + +V   + ++ ARE++L  ++ +             SI A
Sbjct: 61  EYLYKSRSDLEEGYLSKYRSEIVCEPSLARCAREIELGKYLLMGKGEEMTGGRNRESILA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPE 174
           D +E+LIAA+YLD  ++ A   V + + +   +       RD KT+LQE           
Sbjct: 121 DAMEALIAAIYLDSDLKTASDIVLRLFDEIIKEVLSGLIYRDYKTKLQEVTQKMGSEKII 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           YK+T   GPDH+  F + V +      +GM  SK+ AEQ AA E L + G+
Sbjct: 181 YKLTDEYGPDHNKMFVIEVYVGENRLGRGMGRSKKEAEQYAAMEALSKMGL 231


>gi|89098685|ref|ZP_01171567.1| Rnc [Bacillus sp. NRRL B-14911]
 gi|89086647|gb|EAR65766.1| Rnc [Bacillus sp. NRRL B-14911]
          Length = 259

 Score =  157 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 5/227 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
            +++   +K+IG +F N  LL++A THSS  + ++    E  ERLEFLGD +L L +S  
Sbjct: 17  EMQFREFQKKIGISFENEKLLKQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTVSQF 76

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  +    EGEL+    ++V   +    A EL+    + +             ++ ADV
Sbjct: 77  LYKKYPMMSEGELTKLRAAVVCEPSLVTFANELEFGKLVLLGKGEEMTGGRERPALLADV 136

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ I ALYL+ GI+    F+++    +          D K++LQE          EYK+
Sbjct: 137 FEAFIGALYLEKGIDTVIGFLEQTVFPKINSGAFSHVMDFKSQLQELVQRDGAGAIEYKI 196

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               GP H   F   V +SG     G   SK+ AEQ AA   L+   
Sbjct: 197 LQEKGPAHSREFVSRVSLSGNELGTGTGRSKKEAEQHAAQMALEILK 243


>gi|229541120|ref|ZP_04430180.1| ribonuclease III [Bacillus coagulans 36D1]
 gi|229325540|gb|EEN91215.1| ribonuclease III [Bacillus coagulans 36D1]
          Length = 246

 Score =  157 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 109/224 (48%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
           ++  L++++G  F + +LL++A THSS  + + E      ERLEFLGD +L L +S  LF
Sbjct: 15  KFGKLQEQLGIHFQDVNLLKQAFTHSSYVNEHPEKRRHDNERLEFLGDAVLELTVSHYLF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N F S  EGE++    S+V   +    A EL    +I +             ++ ADV E
Sbjct: 75  NRFPSMNEGEMTKLRASVVCEPSLVIFANELHFGEYILLGKGEEMTGGRTRPALLADVFE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G++   + ++K    +  +       D K++LQE+   +     EY +  
Sbjct: 135 AFIGALYLDKGLKAVVSLLEKVVFPKIDEGLFSSTADYKSKLQEYVQKRTSGVLEYTILD 194

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP HD  F   V ++  A   G   SK+ AEQ AA   L   
Sbjct: 195 ERGPAHDKEFVSSVSLNNKALGTGKGRSKKEAEQQAAQTALSNL 238


>gi|303242104|ref|ZP_07328595.1| ribonuclease III [Acetivibrio cellulolyticus CD2]
 gi|302590398|gb|EFL60155.1| ribonuclease III [Acetivibrio cellulolyticus CD2]
          Length = 235

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 111/225 (49%), Gaps = 6/225 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
              + EK I Y F ++  L  ALTHSS ++ Y+     S ERLEFLGD +L ++IS  ++
Sbjct: 10  NIESFEKIIKYEFKDKDNLVLALTHSSYANEYKSEKLISNERLEFLGDSVLSVVISENIY 69

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++    EGE++    ++V   +    A  L +  ++ +            TSI +D +E
Sbjct: 70  KNYSHLSEGEMTKFRANVVCEASLENCANNLSIGQYLLLGKGEEITGGRTRTSILSDAME 129

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLDGG+E A +FV    ++    S K     D KT+LQE           Y++ 
Sbjct: 130 ALIGAIYLDGGLESAKSFVLSQMEKFIDDSIKGEIFMDYKTQLQEIIQKNNDQKVTYEII 189

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GPDH   F   V++       G   +K+ AEQ+AA   LK+ 
Sbjct: 190 DEKGPDHSKIFVSQVKLDDKVIGVGEGRTKKEAEQMAAKTSLKKI 234


>gi|331269661|ref|YP_004396153.1| ribonuclease III [Clostridium botulinum BKT015925]
 gi|329126211|gb|AEB76156.1| Ribonuclease III [Clostridium botulinum BKT015925]
          Length = 236

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/230 (34%), Positives = 116/230 (50%), Gaps = 7/230 (3%)

Query: 1   MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLI 55
           M   R    + +E ++   F + +LL+ ALTHSS  +  +   S ERLEFLGD IL L I
Sbjct: 1   MKKNRENILNEVENKLNVKFNDINLLDTALTHSSFVNENKNIYSNERLEFLGDSILQLCI 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S LL+N ++   EG L+ +   +V   +  +VA+E ++  +I +S           TSI 
Sbjct: 61  SELLYNKYEQEPEGFLTKKRALIVCGNSLHEVAKEWNIGKYINMSKGEEMTGGRTRTSIL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTP 173
           +D VE++IA++YLD G EVA  F+   + +      S +   D KT+LQE          
Sbjct: 121 SDCVEAIIASIYLDQGYEVAKKFIIDNFNEIIQKANSDQIILDYKTKLQETIQKFGDYNI 180

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           EY++    GP H  +F   V I       G   SK+ AEQ AA E LK  
Sbjct: 181 EYRLVSFDGPPHRRKFITEVLIDSEVKGVGEGYSKKEAEQNAAKEALKGL 230


>gi|262037510|ref|ZP_06010969.1| ribonuclease III [Leptotrichia goodfellowii F0264]
 gi|261748440|gb|EEY35820.1| ribonuclease III [Leptotrichia goodfellowii F0264]
          Length = 238

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56
           M       L ++I Y F N S L++ALTH S S+ +++S     E+LEFLGD +L L+ +
Sbjct: 1   MKIKNVEELMEKIDYKFRNESYLKEALTHRSFSNEHEKSKNFDNEKLEFLGDAVLNLITT 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++N      EGEL+   + ++S    S +A E+ L  ++ +S+           SI  
Sbjct: 61  EYIYNSGKGKNEGELAKLKSQIISEPVFSAIAAEIGLGDYLYLSNGEESSGGRKRKSILG 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPE 174
           D  E+LI A++LD     A     K+   +       +   D KT LQE   +K+   PE
Sbjct: 121 DAFEALIGAVFLDSDYYTAKNTALKFLPDKINNLEDIEGIIDYKTVLQEVFQSKYKKMPE 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           Y++    GPDH+  F + V+++      G   SK+ AE+ AA E ++
Sbjct: 181 YEILDTKGPDHNKVFEISVKLNNKIIGIGRGKSKKEAEKRAAKEAIE 227


>gi|260588638|ref|ZP_05854551.1| ribonuclease III [Blautia hansenii DSM 20583]
 gi|260541113|gb|EEX21682.1| ribonuclease III [Blautia hansenii DSM 20583]
          Length = 263

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 118/226 (52%), Gaps = 5/226 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIST 57
           ++ ++  LEK+IGY F N  LL  ALTHSS ++ +    +E+ ERLEFLGD +L L  S 
Sbjct: 30  NSKKFLELEKKIGYEFENFDLLVNALTHSSYANEHHIAYKENNERLEFLGDAVLELTSSE 89

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  +    EG+L+ +  S+V   T +  A+E+ L  ++ +             SI +D
Sbjct: 90  FLFYQYADLPEGKLTKKRASIVCEPTLALCAKEISLGDYLLLGKGEEATGGRNRNSIISD 149

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+YLDGG   A  FV KY         +   D+KT LQE   A++    +Y +
Sbjct: 150 AMEALIGAIYLDGGFANAKEFVHKYILNDIENK-QLFYDSKTTLQEIVQAQYEDDVKYVL 208

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDH+  F V   +      +G   +K+AAEQ AA   +K+ 
Sbjct: 209 VKEEGPDHNKSFYVEALLGDKKLGEGCGHTKKAAEQQAAYCAIKKL 254


>gi|254503847|ref|ZP_05115998.1| ribonuclease III [Labrenzia alexandrii DFL-11]
 gi|222439918|gb|EEE46597.1| ribonuclease III [Labrenzia alexandrii DFL-11]
          Length = 235

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 103/233 (44%), Positives = 144/233 (61%), Gaps = 7/233 (3%)

Query: 1   MSALR----YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGL 53
           M+  +     + L+  + Y F +  LL  +LTH+S    + +   SY+RLEFLGDR+LGL
Sbjct: 1   MTKDKKQNPIAALKAALAYEFKDLELLRVSLTHASALDPADTVAGSYQRLEFLGDRVLGL 60

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           +++++L +HF  A EGEL+ RFN +V  ETC+++A EL +   +R+     +      T+
Sbjct: 61  VVASMLHHHFPKADEGELARRFNHMVKRETCAEIASELGVGDAMRIGQAEAQTGGRKKTA 120

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
           + AD+ E++IAA+YLDGG E A  FV + W+ R L      RDAKT LQEWA +K   TP
Sbjct: 121 LLADICEAIIAAIYLDGGFEAADEFVRRLWEPRMLSWTGPLRDAKTTLQEWAQSKSLPTP 180

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            Y+V  R GPDH P FTV V + GL   +G   SKR AEQ AA  VL+REG+W
Sbjct: 181 HYEVASREGPDHAPSFTVSVIVQGLKNGEGKGGSKRIAEQHAAEAVLRREGVW 233


>gi|160892686|ref|ZP_02073476.1| hypothetical protein CLOL250_00216 [Clostridium sp. L2-50]
 gi|156865727|gb|EDO59158.1| hypothetical protein CLOL250_00216 [Clostridium sp. L2-50]
          Length = 230

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 111/228 (48%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  R+  +E  IGY F +  LL  ALTH S ++  +    ESYER EFLGD IL  ++S
Sbjct: 1   MNTERFHNIEDIIGYTFRDLDLLVTALTHKSYANERKINKVESYERSEFLGDAILEFVVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ ++    EG+L+    SLV   T SQ+++EL    ++ +S            SI  
Sbjct: 61  EYLYQNYPEYPEGKLTKLRASLVCEFTLSQISKELKFGHYVLLSKGEDLTGGRNRNSIMC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D+ E+++ A+YLDGG++ A  FV ++          F         +    K   T  Y 
Sbjct: 121 DLFEAVLGAIYLDGGLDEAKKFVHRFLLDDVETHSLFYD--AKSTLQELAQKEEKTLTYA 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +    GPDH+  +   V I+G   A G   S++A+EQ AA   L +  
Sbjct: 179 LLEEKGPDHNKSYVSEVCINGEHVATGEGASRKASEQTAAYNALLQIK 226


>gi|319408283|emb|CBI81936.1| ribonuclease III [Bartonella schoenbuchensis R1]
          Length = 236

 Score =  157 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 111/226 (49%), Positives = 152/226 (67%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LEK  G+ F N + L++ALTHSS+    + +YERLEFLGDR+LGLL++ +L+
Sbjct: 2   MKRHIIDQLEKLTGHRFKNENRLKRALTHSSVQGLAEGNYERLEFLGDRVLGLLVAEMLY 61

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+ +TC+++A E+ L   I V  +++      + ++ ADV+E
Sbjct: 62  QFFPHASEGELSVRLNGLVNTQTCAEIALEMGLPDMIHVGFEMKNLENRRVANMYADVIE 121

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDG +E   +F+ KYW+ RA K    RRDAKTELQEWAH + G  P+Y+V  R
Sbjct: 122 ALIAVMYLDGDLECVRSFIRKYWQDRARKMDAGRRDAKTELQEWAHTQDGAQPQYRVVKR 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            GPDHDP F V V++ G AP  G   SKR AE+VAA ++L+REG+W
Sbjct: 182 YGPDHDPIFMVEVKVFGFAPEIGQGSSKRHAERVAAEKILRREGVW 227


>gi|326203626|ref|ZP_08193490.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
 gi|325986446|gb|EGD47278.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
          Length = 236

 Score =  157 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 84/228 (36%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             R S LE  IG+ F N+ ++  A+THSS ++  +    +  ERLEFLGD +LGL+IS  
Sbjct: 7   NNRISELENIIGHNFNNKDIIFAAITHSSYANEKKAKKLKYNERLEFLGDSVLGLVISEY 66

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF    +  EGELSV    +V   + SQ A ++ L  ++ +             S+ +D 
Sbjct: 67  LFQKKPNLPEGELSVTRAKIVCENSLSQCATDISLGKYLLLGKGEELSGGREKISLLSDA 126

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYK 176
            E+LI ALY+DGG E A  FV KY  +        K   D KT+LQE           Y 
Sbjct: 127 FEALIGALYIDGGFETAKGFVHKYMDKIIRSCIEGKLFYDYKTQLQELVQQNGEQQISYS 186

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           VT + GPDH+  F   V+I+G+   QG   SK+ AEQ AA + L    
Sbjct: 187 VTDQFGPDHNKTFVTEVKINGVTQGQGKGHSKKEAEQNAAKDALNNLK 234


>gi|323489554|ref|ZP_08094781.1| ribonuclease 3 [Planococcus donghaensis MPA1U2]
 gi|323396685|gb|EGA89504.1| ribonuclease 3 [Planococcus donghaensis MPA1U2]
          Length = 251

 Score =  157 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           +  L+K +   F   +LL +A THSS  + ++       ERLEFLGD +L L +S  L+ 
Sbjct: 23  FEQLQKELNITFKKPTLLYQAFTHSSYVNEHRRKQFTDNERLEFLGDAVLELSVSHYLYM 82

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EGEL+    ++V   +    A EL    +I +             ++ ADV ES
Sbjct: 83  KYPEMSEGELTKLRAAIVCEPSLVLFANELGFGKYILLGKGEELTGGRTRPALLADVFES 142

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E   +F++     +          D K++LQE    K   T  Y++   
Sbjct: 143 YIGALYLDQGLEPVVSFLEMVLFPKVDIGAFSHVMDYKSQLQELVQQKNTGTLSYEIIDE 202

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GP H   F   V ++      G   SK+ AEQ AA   +++ 
Sbjct: 203 IGPAHSRVFVTRVSLADRELGVGNGRSKKEAEQQAAQLAIRKL 245


>gi|160947505|ref|ZP_02094672.1| hypothetical protein PEPMIC_01439 [Parvimonas micra ATCC 33270]
 gi|158446639|gb|EDP23634.1| hypothetical protein PEPMIC_01439 [Parvimonas micra ATCC 33270]
          Length = 237

 Score =  157 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 110/225 (48%), Gaps = 6/225 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62
            + L + +GY F +  LL  A  H S  +  ++   S ERLEFLGD ILG ++S  L+  
Sbjct: 10  LNELMEVLGYKFKDLELLNLAFVHRSYLNECKDATISNERLEFLGDVILGFIVSVELYEQ 69

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F ++ EG L+   + +V  E+ S  AR  +L  ++ +             SI AD  E+L
Sbjct: 70  FPNSDEGYLTKIRSKVVCEESFSYAARTFNLGKYLLLGKGEDSFGGRNRNSILADTFEAL 129

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
             ALYLDGG++V     +KY+       +    F +D K+ LQE+ H        Y +  
Sbjct: 130 FGALYLDGGMDVVTEIANKYFFDTVVYKIDKNIFIKDYKSYLQEYFHKNATTKISYTLVA 189

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GPDHD  F + V I  +    G   +K+ AEQ AA + L + G
Sbjct: 190 ERGPDHDKEFDMCVNIDDVVKGYGTGKNKKQAEQQAARDALIKSG 234


>gi|289423974|ref|ZP_06425766.1| ribonuclease III [Peptostreptococcus anaerobius 653-L]
 gi|289155610|gb|EFD04283.1| ribonuclease III [Peptostreptococcus anaerobius 653-L]
          Length = 236

 Score =  157 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 117/225 (52%), Gaps = 3/225 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLF 60
             + S+ EK+IGY F ++  ++ ALTHSS ++ ++E    ERLEFLGD +LGL++S  LF
Sbjct: 9   REKISSFEKKIGYIFNDKENIQVALTHSSFANEHKEYKYNERLEFLGDSVLGLVVSDYLF 68

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +      EG+L+    ++V  E+ S VAR+L+L  ++ + +  R+   S   SI AD  E
Sbjct: 69  SVRTDLPEGQLTKFRANVVCEESLSVVARKLNLGEYLLLGNGERQSGGSDRDSILADATE 128

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++IAA+Y+DGG + A  F+    +    K+           + +           Y++  
Sbjct: 129 AVIAAIYIDGGFDKAKEFIMYNLRDVIAKTIDGNIFRDYKTILQEVIQSKNGRISYRLVQ 188

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GPDHD  F + V         G+  +K+ AE+ AA   L+  G
Sbjct: 189 EKGPDHDKVFEMEVRSGNKVLGFGVGKNKKDAEKEAAKNALENMG 233


>gi|260437031|ref|ZP_05790847.1| ribonuclease III [Butyrivibrio crossotus DSM 2876]
 gi|292810340|gb|EFF69545.1| ribonuclease III [Butyrivibrio crossotus DSM 2876]
          Length = 227

 Score =  157 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/221 (38%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
           +     EK+IGYA+ N  LL+ ALTHSS  +   +    + ERLEFLGD +L L +S  L
Sbjct: 1   MNIKEFEKKIGYAYNNVDLLKLALTHSSYGNEVYKDKLHNNERLEFLGDAVLELTVSDYL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           FN   +  EG LS +  S+V   T +  ARE++L   + +          F  SI +D +
Sbjct: 61  FNEECNMPEGSLSRKRASIVCEPTLAMCAREINLPEVLFMGKGEELTGGRFRDSIVSDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++I ++YLDGGIE A  F++K+     +K  +   D+KT LQE   A +   PEY +T 
Sbjct: 121 EAVIGSIYLDGGIECAREFINKFIL-ADIKDKQLFVDSKTILQERIQAGYKEGPEYIITG 179

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            SGPDH   F   V I G     G   +K+AAEQ AA   +
Sbjct: 180 ESGPDHCKVFEAEVRIEGRLIGSGKGRTKKAAEQQAAYNAI 220


>gi|327399771|ref|YP_004340640.1| Ribonuclease 3 [Hippea maritima DSM 10411]
 gi|327182400|gb|AEA34581.1| Ribonuclease 3 [Hippea maritima DSM 10411]
          Length = 234

 Score =  157 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/218 (36%), Positives = 124/218 (56%), Gaps = 2/218 (0%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             E+R+GY F N+ LL++ALTH S      +S ERLEFLGD +L L+++  L N++ +  
Sbjct: 12  EFEERLGYTFKNKELLKRALTHRSYVKDKAKSNERLEFLGDAVLELVVTEFLINNYKNID 71

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS    + V+ +T S++AR+L+L+  I V    +K+  +   SI  D  E+++ A+Y
Sbjct: 72  EGKLSKIRAASVNTKTLSKLARKLELSDQILVGRSEKKEGITNNDSILEDAFEAIVGAIY 131

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG++ A  FV+   K   +   +     D KT LQE    +FG  PEY +    G +H
Sbjct: 132 LDGGLDKARRFVEHMLKDTIIAIVENGIIFDYKTHLQEITQKQFGCLPEYVIVKEDGQEH 191

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  F   V I G+    G+  SK+ AE+ AA E +K+ 
Sbjct: 192 NKTFYCDVMIKGVKYGFGIGKSKKDAEKNAAKEAVKKL 229


>gi|169335334|ref|ZP_02862527.1| hypothetical protein ANASTE_01746 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258072|gb|EDS72038.1| hypothetical protein ANASTE_01746 [Anaerofustis stercorihominis DSM
           17244]
          Length = 227

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 4/227 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +    LE+++GY F ++ L++ ALTHSS S+  +  ++ ERLEFLGD +L L +   L+ 
Sbjct: 1   MEIERLEQKLGYEFKDKELIKVALTHSSKSNENKTLQNNERLEFLGDAVLDLCVGAYLYK 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                KEG L+     +V A++    + +LDL  FI +          +  +I AD  E+
Sbjct: 61  TLPGKKEGVLTKLRALIVCADSLFSASDKLDLGEFIMLGKGEMHSGGKYKKNIIADCFEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++ A+YLD   E   T           K+       D KT LQE+ H+K      Y++  
Sbjct: 121 VLGAIYLDSDYEKVSTIALTLLSDVIKKAISGNLTYDYKTLLQEYIHSKNIKDFSYELVQ 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
             GP+HD  FT  V I+     QG   +K+ +EQ AA   LK+  + 
Sbjct: 181 IKGPEHDQIFTSKVIINNKDMGQGEGKNKKESEQHAALNTLKKLKLI 227


>gi|261368258|ref|ZP_05981141.1| ribonuclease III [Subdoligranulum variabile DSM 15176]
 gi|282569773|gb|EFB75308.1| ribonuclease III [Subdoligranulum variabile DSM 15176]
          Length = 225

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 117/226 (51%), Gaps = 8/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57
           M+  +   L++ + Y F N +LL  ALTH+S ++  +      ERLEFLGD +L ++ + 
Sbjct: 1   MATHKPEELQEVLHYQFKNPALLRIALTHTSYANESKVPTTHNERLEFLGDSVLSVVAAD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF+      EGEL+    SLVS +   Q A+E+ L  ++R+             S+ +D
Sbjct: 61  YLFHQ-SDRPEGELTRMRASLVSEDALFQFAQEIRLGDYLRLGHGEDLGGGRNRPSVVSD 119

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
             E++IAALYLDGG+EVA +F+         +      D KT LQE           Y+V
Sbjct: 120 AFEAVIAALYLDGGLEVARSFIL----PFLSEGKTAEEDYKTRLQEVVQQNPSARLRYEV 175

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +GPDH  +FTV V       A+G+  SK+AAEQ AA + L R 
Sbjct: 176 EGETGPDHAKQFTVAVYCDDKRLAEGVGRSKKAAEQHAAKQALDRL 221


>gi|222475478|ref|YP_002563895.1| ribonuclease III (rnc) [Anaplasma marginale str. Florida]
 gi|254995287|ref|ZP_05277477.1| ribonuclease III [Anaplasma marginale str. Mississippi]
 gi|255003466|ref|ZP_05278430.1| ribonuclease III [Anaplasma marginale str. Puerto Rico]
 gi|254807234|sp|B9KGT5|RNC_ANAMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|222419616|gb|ACM49639.1| ribonuclease III (rnc) [Anaplasma marginale str. Florida]
          Length = 232

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/228 (35%), Positives = 118/228 (51%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRI----GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56
           M  +   +L  +I    GY F +  LL +ALTH S+S+    +YERLEFLGD +L + +S
Sbjct: 1   MHPVDKKSLALKIYEATGYQFRDLDLLLEALTHPSLSYKSAANYERLEFLGDAVLSMTVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +L+  F    EG L+ +  +LV      ++AR + L   I +S   R    S       
Sbjct: 61  EMLYRLFPDDDEGCLTRKRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLE 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           + +E+LI A+Y+DGG E   +F+ K+W  +    S    +D KT LQEW   +    P Y
Sbjct: 121 NALEALIGAMYMDGGPEAYRSFIHKHWLARAQHMSYTPPQDPKTALQEWVQGRGWAMPLY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K+  +SGP+H P F V V I       G   SK+ AEQ AA  +LK+ 
Sbjct: 181 KLVSKSGPEHKPVFAVEVSIQEHGNVLGTGSSKKLAEQEAAKLMLKKI 228


>gi|269121067|ref|YP_003309244.1| ribonuclease III [Sebaldella termitidis ATCC 33386]
 gi|268614945|gb|ACZ09313.1| ribonuclease III [Sebaldella termitidis ATCC 33386]
          Length = 231

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 113/225 (50%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M   +   L ++IGY F +  LL++AL H S ++ + E    + ERLEFLGD +L L+ +
Sbjct: 1   MDDSKLRELMEKIGYEFDDIKLLKEALIHRSYANEHGEIENINNERLEFLGDAVLDLIST 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++       EG+L+   + ++S    S V++E+ L  ++ +S+           SI  
Sbjct: 61  EYIYTKEKDDNEGDLAKLKSRIISEPIFSAVSKEIALGEYLFLSNGEEITGGRDRKSILG 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+LI A+++D G + A     KY K +           D KT LQE   +KF + P 
Sbjct: 121 DAFEALIGAIFMDSGFDEAKRIALKYLKDKIDNIDDLEELKDYKTLLQELFQSKFHIIPN 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           Y++    GPDH+ +F + V++       G   SK+ AE+ AA E 
Sbjct: 181 YEILSEKGPDHNKKFEIAVKLKEEIVGIGTGTSKKEAEKNAAREA 225


>gi|46143661|ref|ZP_00134800.2| COG0571: dsRNA-specific ribonuclease [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 226

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 1   MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 58  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V 
Sbjct: 118 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 178 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 223


>gi|307247515|ref|ZP_07529560.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307249746|ref|ZP_07531725.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307254355|ref|ZP_07536193.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258813|ref|ZP_07540545.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306856018|gb|EFM88176.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306858254|gb|EFM90331.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306862654|gb|EFM94610.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867164|gb|EFM99020.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 243

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 18  MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 75  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V 
Sbjct: 135 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240


>gi|307252103|ref|ZP_07534002.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860403|gb|EFM92417.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 243

 Score =  156 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 18  MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 75  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V 
Sbjct: 135 AIIAAIYLDAGMDKAIAQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240


>gi|307263177|ref|ZP_07544798.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|306871539|gb|EFN03262.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 243

 Score =  156 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 18  MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 75  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V 
Sbjct: 135 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLVKL 240


>gi|190149854|ref|YP_001968379.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|189914985|gb|ACE61237.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
          Length = 226

 Score =  156 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 1   MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 58  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V 
Sbjct: 118 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 178 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLVKL 223


>gi|78778218|ref|YP_394533.1| ribonuclease III [Sulfurimonas denitrificans DSM 1251]
 gi|78498758|gb|ABB45298.1| RNAse III [Sulfurimonas denitrificans DSM 1251]
          Length = 226

 Score =  156 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 4/225 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            +     LE+ +GY F N+ L+ +ALTH S  H      ERLEFLGD +L L++   LF 
Sbjct: 1   MSKNIEALEEILGYKFKNQKLIIEALTHKS--HKQPYDNERLEFLGDAVLDLIVGEYLFF 58

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F S+ EG LS    +LV+ +   ++AR ++L  +I +S+    +      S+ ++  E+
Sbjct: 59  KFASSDEGTLSKIRAALVNEDGFERLARSINLGEYIYLSNAEENNGGREKASLLSNAFEA 118

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A+YL+ G+++         ++   +       RD KT LQE   A+FG TPEY V  
Sbjct: 119 MIGAIYLESGLDIVKPIAIGIIERNYQEISLDSLFRDYKTTLQELTQARFGETPEYIVVA 178

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GPDH   F V V I G   A+ +  SK+ A+Q AA   +K   
Sbjct: 179 SRGPDHKKEFEVAVIIEGKEYARAIGKSKKIAQQEAAEMAVKILK 223


>gi|319649604|ref|ZP_08003760.1| rnc protein [Bacillus sp. 2_A_57_CT2]
 gi|317398766|gb|EFV79448.1| rnc protein [Bacillus sp. 2_A_57_CT2]
          Length = 246

 Score =  156 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 103/225 (45%), Gaps = 5/225 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   +  IG  F N  LL++A THSS  + ++    E  ERLEFLGD +L L +S  L+
Sbjct: 18  QFKEFQTEIGIQFENEKLLKQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTVSKFLY 77

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EGEL+    ++V   +    A  L   S + +             ++ ADV E
Sbjct: 78  LKYPMMSEGELTKLRAAVVCEPSLVSFAHALSFGSLVLLGKGEEMTGGRTRPALLADVFE 137

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G++    F++K    +          D K++LQE        T EYK+  
Sbjct: 138 AFIGALYLDKGLDTVVGFLEKVVFPKIDSGAFSHVMDFKSQLQELVQRDGAGTIEYKILQ 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GP H+  F   V ++G     G   SK+ AEQ AA   L+   
Sbjct: 198 EKGPAHNREFVSTVSLNGRELGTGTGRSKKEAEQHAAQMALEVLK 242


>gi|302389624|ref|YP_003825445.1| RNAse III [Thermosediminibacter oceani DSM 16646]
 gi|302200252|gb|ADL07822.1| RNAse III [Thermosediminibacter oceani DSM 16646]
          Length = 241

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 106/225 (47%), Gaps = 6/225 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFN 61
              L++ +G  F + ++L +A  H S ++     +QE  +RLEFLGD +L L+IS  +++
Sbjct: 11  LKKLQQILGVDFDDLNILNQAFIHPSYAYEKGLSHQEHNQRLEFLGDAVLELVISEWIYD 70

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+     LV  E+ + ++REL L  F+ +             SI AD  E+
Sbjct: 71  KYPNYTEGELTKLRALLVCEESLAYLSRELTLGDFLIMGKGEEITGGREKASILADTFEA 130

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA--KTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD G      FV + +K    ++ K +     KT LQE           Y V  
Sbjct: 131 LIGAMYLDKGFGAITGFVREKFKPVMERAEKGKLFPDYKTALQEMLQRISPDRITYNVIK 190

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GPDH+  F V V         G   SK+ AEQ AA   ++   
Sbjct: 191 EEGPDHNKTFFVEVVWKNKILGSGCGKSKKEAEQNAAKAAIRFLK 235


>gi|255004592|ref|ZP_05279393.1| ribonuclease III [Anaplasma marginale str. Virginia]
          Length = 232

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 81/228 (35%), Positives = 118/228 (51%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRI----GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56
           M  +   +L  +I    GY F +  LL +ALTH S+S+    +YERLEFLGD +L + IS
Sbjct: 1   MHPVDKKSLALKIYEATGYQFRDLDLLLEALTHPSLSYKSAANYERLEFLGDAVLSMTIS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +L+  F    EG L+ +  +LV      ++AR + L   I +S   R    S       
Sbjct: 61  EMLYRLFPDDDEGCLTRKRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLE 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           + +E+LI A+Y+DGG E   +F+ K+W  +    S    +D KT LQEW   +    P Y
Sbjct: 121 NALEALIGAMYMDGGPEAYRSFIHKHWLARAQHMSYTPPQDPKTALQEWVQGRGWAMPLY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K+  +SGP+H P F V V I       G   SK+ AEQ AA  +L++ 
Sbjct: 181 KLVSKSGPEHKPVFAVEVSIQEHGNVLGTGSSKKLAEQEAAKLMLQKI 228


>gi|307260992|ref|ZP_07542674.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306869294|gb|EFN01089.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 243

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 18  MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 75  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V 
Sbjct: 135 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240


>gi|253682200|ref|ZP_04862997.1| ribonuclease III [Clostridium botulinum D str. 1873]
 gi|253561912|gb|EES91364.1| ribonuclease III [Clostridium botulinum D str. 1873]
          Length = 236

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 113/230 (49%), Gaps = 7/230 (3%)

Query: 1   MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLI 55
           M   R    + +E ++   F + +LL+ ALTHSS  +  +   S ERLEFLGD IL L I
Sbjct: 1   MKKNRESILNEVENKLNVKFNDINLLDTALTHSSFVNENKNIYSNERLEFLGDSILQLCI 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+N ++   EG L+ +   +V   +  +VA+E ++  +I +S           TSI 
Sbjct: 61  SEFLYNKYEQEPEGFLTKKRALIVCGNSLHEVAKEWNIGKYINMSKGEEMTGGRTRTSIL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTP 173
           +D VE++IA++YLD G   A  F+   + +      S +   D KT+LQE          
Sbjct: 121 SDCVEAIIASIYLDQGYATAKKFIIDNFNEIIQKANSDQIILDYKTKLQETIQKFGDYNI 180

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           EYK+    GP H  +F   V I       G   SK+ AEQ AA E LK  
Sbjct: 181 EYKLVSFDGPPHRRKFITEVLIDSEVKGVGEGYSKKEAEQNAAKEALKGL 230


>gi|311029996|ref|ZP_07708086.1| ribonuclease III [Bacillus sp. m3-13]
          Length = 247

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 107/227 (47%), Gaps = 5/227 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
              +  L++++G  F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  
Sbjct: 17  KKNFVMLQEKLGVKFHNEKLLYQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTISQF 76

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  +    EG+L+    S+V   +    A +L    ++ +             ++ ADV
Sbjct: 77  LYKKYPMMSEGQLTKLRASIVCEPSLVSFANDLSFGQYVLLGKGEEITGGRARPALLADV 136

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ I ALYLD G+E    F++KY   +  +       D K++LQE          EY+V
Sbjct: 137 FEAFIGALYLDLGLETVFQFLEKYVYPKINEGAFSHVMDFKSQLQEMIQRNALGVIEYEV 196

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               GP H+  F   V ++      G+  SK+ AEQ AA   L++  
Sbjct: 197 LEEKGPAHNREFVSKVSLNKEEMGIGVGRSKKEAEQHAAQFALQKLK 243


>gi|213018872|ref|ZP_03334680.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|212995823|gb|EEB56463.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 233

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 83/233 (35%), Positives = 129/233 (55%), Gaps = 6/233 (2%)

Query: 1   MSALRY--STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLL 54
           M  +R    T+ K I Y F + ++LE+ALTH S++    E    SYERLEFLGD +L ++
Sbjct: 1   MINMRVLNDTISKVINYKFTDYAILEEALTHPSVNKRNSEDQVVSYERLEFLGDSVLNMV 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           +S +LF  F   KEG L+ R   LV   T + VA+E++L +FI +++  R +        
Sbjct: 61  VSVMLFKMFPEEKEGALAKRKTDLVCGSTIANVAKEIELGNFIIMNNSERCNGGKCNLKN 120

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
             + +E+LI A+Y+DGG+E    F+ ++W++ A       +D KT LQEW        P+
Sbjct: 121 LENSLEALIGAIYIDGGLESVEKFIIRHWEKLAKDILDPPQDPKTSLQEWTQRNKLPLPK 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           Y++  ++GP H+P FT+ V I           SK+ AEQ AA  +L++    T
Sbjct: 181 YELVKQTGPAHNPEFTISVCIESYDKVSACAPSKKIAEQKAAELILEKIKKTT 233


>gi|320547232|ref|ZP_08041525.1| ribonuclease III [Streptococcus equinus ATCC 9812]
 gi|320448120|gb|EFW88870.1| ribonuclease III [Streptococcus equinus ATCC 9812]
          Length = 228

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M AL  + L++  G  F + +LL+ A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MQALD-TKLQRDFGITFKDTTLLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R      FI++ +   K       +I  
Sbjct: 60  QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDDFIKLGNGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL +D G+E    F+++    +  K + +  +D KT LQE       VT +Y
Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELLQGHGDVTIDY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +V+  SGP H   F V V ++  A +QG+  SK+ AEQ AA   L
Sbjct: 180 RVSNESGPAHAKVFEVTVYVNDEAKSQGIGKSKKLAEQDAAKNAL 224


>gi|118474451|ref|YP_892860.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40]
 gi|261885507|ref|ZP_06009546.1| ribonuclease III [Campylobacter fetus subsp. venerealis str.
           Azul-94]
 gi|189043299|sp|A0RRM7|RNC_CAMFF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|118413677|gb|ABK82097.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40]
          Length = 223

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M   + + LE+ +GY F N++LL++ALTH S+  S   + ERLEFLGD +L L++   LF
Sbjct: 1   MD--KLNRLEEHLGYKFKNKTLLKEALTHKSMKSSV--NNERLEFLGDAVLDLIVGEYLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG LS    +LV+ ++ + ++ ++ L  F+ +S+    +      S+ +D +E
Sbjct: 57  FKFKDTDEGNLSKLRAALVNEKSFASISSQIRLGDFLYLSAAEDNNNGRNKPSLVSDALE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           +L+ A+YL+ G+E          + +          +D KT LQE   A+FGVTP Y++ 
Sbjct: 117 ALMGAIYLESGLEAVKKIFINLLESQYNNIDLQSLGKDYKTTLQEITQARFGVTPRYELV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             SGPDH   F + V ++    A+ +  SK+ AEQ AA +VL+   I
Sbjct: 177 SSSGPDHKKSFEMAVFLNDKELARAIGNSKKEAEQSAAWKVLQGMNI 223


>gi|197303071|ref|ZP_03168119.1| hypothetical protein RUMLAC_01798 [Ruminococcus lactaris ATCC
           29176]
 gi|197297926|gb|EDY32478.1| hypothetical protein RUMLAC_01798 [Ruminococcus lactaris ATCC
           29176]
          Length = 229

 Score =  155 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 111/224 (49%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M   R   LEK+IGY F N  LLE+A+ HSS ++          ERLEFLGD +L L+ S
Sbjct: 1   MDK-RLKELEKKIGYTFENHKLLERAMMHSSYTNEKHLEKYRCNERLEFLGDAVLELISS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF       EGEL+    S+V   + +  AR++DL S++ +             SI +
Sbjct: 60  EYLFGELPRVSEGELTKTRASMVCEPSLAMCARDIDLGSYLLLGKGEEATGGRMRDSITS 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LI A+YLDGG   +       +    L+  K   D+KT LQE   A       Y+
Sbjct: 120 DAMEALIGAIYLDGGF-TSAKEFIHRFILTDLEDKKLFYDSKTILQEIVQANKAGNITYE 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +    GPDH+  F V V I G     G   SK+AAEQ AA + +
Sbjct: 179 LVGEEGPDHNKTFEVRVRIGGQPYGSGKGRSKKAAEQKAAYQAI 222


>gi|182417248|ref|ZP_02948601.1| ribonuclease III [Clostridium butyricum 5521]
 gi|237669155|ref|ZP_04529139.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378894|gb|EDT76407.1| ribonuclease III [Clostridium butyricum 5521]
 gi|237657503|gb|EEP55059.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 232

 Score =  155 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 123/227 (54%), Gaps = 4/227 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58
           M+      +E+ +G  F N +LL+ ALTHSS ++ +++    ERLEFLGD +L L I+  
Sbjct: 1   MNKYTLKEIEENLGVCFNNPTLLKTALTHSSFANQFKDAEYNERLEFLGDAVLQLCITEY 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LFN+F S  EGEL+   + +V   +  ++A++L L  +IR+S            SIQAD 
Sbjct: 61  LFNNFKSKSEGELTKTRSLIVCENSLYEIAKKLHLGEYIRMSKGEELTGGRERISIQADA 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           VE++IAA+YLD GI     F+  ++++      + +   D KT+LQE+      V+  Y+
Sbjct: 121 VEAVIAAVYLDKGIGFVRDFILLHFEEIIKKAINNEIILDFKTKLQEFLQKDGEVSIHYE 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GP H  +F   V I      +G   SK+ AEQ AA + L + 
Sbjct: 181 LIKHEGPPHRRKFFTNVVIENNIMGEGCGYSKKEAEQNAAKQALMKL 227


>gi|220931875|ref|YP_002508783.1| Ribonuclease III [Halothermothrix orenii H 168]
 gi|219993185|gb|ACL69788.1| Ribonuclease III [Halothermothrix orenii H 168]
          Length = 236

 Score =  155 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 75/217 (34%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
              F + SLL+KA+TH S  H   +      ERLEFLGD +L ++IST L+ +F    EG
Sbjct: 18  NIRFNDISLLQKAVTHKSFVHEKSDPDLEDNERLEFLGDSVLSIVISTYLYKNFPEYNEG 77

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           EL+     +VS+   +  AREL L  +I +      +      SI AD +E++I A+YLD
Sbjct: 78  ELAKMRAYIVSSSHLACKARELGLGKYILMGKGEELNGGRERESILADTLEAVIGAIYLD 137

Query: 130 GGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            G       +  ++K        G   RD KT LQE+         +Y +    GPDH+ 
Sbjct: 138 QGFNTITDLLINFFKDDVKKLDQGNIIRDYKTYLQEFIQKDGSCEIKYNIINEYGPDHNK 197

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +F V V+++G    +G   SK+ AEQ AA + L   G
Sbjct: 198 KFEVGVKVNGKELGRGTGFSKKEAEQKAAKDALSNLG 234


>gi|227821403|ref|YP_002825373.1| ribonuclease III [Sinorhizobium fredii NGR234]
 gi|259491961|sp|C3M8S4|RNC_RHISN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|227340402|gb|ACP24620.1| ribonuclease III [Sinorhizobium fredii NGR234]
          Length = 239

 Score =  155 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 131/225 (58%), Positives = 163/225 (72%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           SA   + LE  IGY FA +  L++ALTHSS  ++   +Y+RLEFLGDR+LGL ++ LLF 
Sbjct: 8   SAEDRARLETAIGYQFAEKERLDRALTHSSARNARASNYQRLEFLGDRVLGLCVAELLFQ 67

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A EGELSVR N LVSAE+C++VA EL L  +IR  SD++K     M +++ADVVES
Sbjct: 68  TFLDANEGELSVRLNQLVSAESCARVADELSLHEYIRTGSDVKKITGKHMMNVRADVVES 127

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           LIAA+YLDGG+E A  FV ++W  RA  +   RRDAKTELQEWAHAKFG  P Y+   RS
Sbjct: 128 LIAAIYLDGGLEAARRFVLRHWTDRAASADGARRDAKTELQEWAHAKFGAAPRYRTDDRS 187

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           GPDHDPRFTV VE+ G+AP  G D SKR AEQ+AA  +L+REG+W
Sbjct: 188 GPDHDPRFTVTVEVDGIAPETGTDRSKRGAEQIAAMRLLEREGVW 232


>gi|310779301|ref|YP_003967634.1| RNAse III [Ilyobacter polytropus DSM 2926]
 gi|309748624|gb|ADO83286.1| RNAse III [Ilyobacter polytropus DSM 2926]
          Length = 237

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M    +  LEK++ Y F ++ LL+ AL H S  +   +    + ERLE LGD +L L+++
Sbjct: 1   MGESCFVELEKKLKYTFKSKKLLKHALIHRSYGNENWDYKKVNNERLELLGDAVLDLVVT 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ HF S+ EG+L+   + +VS    ++++R+L + + + +S           +SI  
Sbjct: 61  EYLYLHFTSSSEGDLAKLKSMIVSEPVLAKISRKLGVGNHLLLSKGEELTGGRDRSSILG 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           DV E+++ A+YLD    +A  F  K+ K+      +     D KT LQE++  ++ V P 
Sbjct: 121 DVFEAILGAVYLDSDFMLAKEFAIKHLKRFIDHIDENEDLIDFKTILQEFSQREYKVIPS 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           Y+V    GPDH   F + V+I+      G   +K++AEQ AA    ++ G+
Sbjct: 181 YEVIKEMGPDHRKSFEIAVKINDELMGLGTGRNKKSAEQSAARNACRKLGV 231


>gi|254519218|ref|ZP_05131274.1| ribonuclease III [Clostridium sp. 7_2_43FAA]
 gi|226912967|gb|EEH98168.1| ribonuclease III [Clostridium sp. 7_2_43FAA]
          Length = 242

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 115/227 (50%), Gaps = 4/227 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTL 58
           M+      +E  IG  F    LL+ ALTHSS ++ +++    ER EFLGD IL L I+  
Sbjct: 11  MAKFNIKEVEDSIGLTFNEPKLLKTALTHSSYANQHKDQEYNERFEFLGDSILQLCITEY 70

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF ++ +  EGEL+   + +V   +  ++ ++L+L  FIR+S            SI AD 
Sbjct: 71  LFLNYKNKSEGELTKIRSLIVCENSLYEIGKKLNLGYFIRISRGEELTGGRERVSIIADA 130

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           VE+L+A +YLD G+E    ++  ++K+      +     D KT+LQE       V+  Y+
Sbjct: 131 VEALLAGIYLDKGLEFVKDYIIGHFKEIIDKAINNDIVLDYKTKLQEEMQKSGEVSIIYE 190

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GP H  +F   V I      +G   SK+ +EQ AA E L+  
Sbjct: 191 LLKYEGPPHRRKFFTSVLIEDRELGKGEGYSKKESEQNAAKEALRNL 237


>gi|160938006|ref|ZP_02085363.1| hypothetical protein CLOBOL_02899 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439000|gb|EDP16755.1| hypothetical protein CLOBOL_02899 [Clostridium bolteae ATCC
           BAA-613]
          Length = 234

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 118/228 (51%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M++     LE+RI Y F N++L  +ALTHSS ++ ++       ERLEFLGD +L ++ S
Sbjct: 1   MNS-HLKELEERIAYEFKNKNLFTQALTHSSYANEHRLDHSRCNERLEFLGDAVLEIVTS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +++  EG+L+    S+V   T +  A +++L  ++ +             S+ +
Sbjct: 60  EFLYRKYETLPEGDLTKIRASIVCEPTLAYCAGDIELGQYLYLGKGEDATGGRNRNSVVS 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LI A+YLDGG   A  F+ ++         +   D+KT LQE   ++      Y+
Sbjct: 120 DAMEALIGAIYLDGGFANAKEFIHRFILNDIEHK-QLFYDSKTILQEMVQSRQEAPLSYE 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +    GPDH+  F V  +I      +G   +K+AAEQVAA   + +  
Sbjct: 179 IIREEGPDHNKSFEVCAKIGDEEVGRGAGRTKKAAEQVAAYNGILKLK 226


>gi|291288904|ref|YP_003505720.1| ribonuclease III [Denitrovibrio acetiphilus DSM 12809]
 gi|290886064|gb|ADD69764.1| ribonuclease III [Denitrovibrio acetiphilus DSM 12809]
          Length = 235

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 129/227 (56%), Gaps = 4/227 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLL 59
           S++   +LE R+GY F+++S++ +ALTH S +H    +++YERLEFLGD +L L+++  L
Sbjct: 6   SSVDIDSLEGRLGYHFSDKSIVLEALTHRSYAHEKKNKQNYERLEFLGDAVLQLIVTEYL 65

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
            + +    EG LS      VS    S++A EL L   I +    +     +  S+  D+ 
Sbjct: 66  LDRYKDYDEGLLSKLRGYFVSEGFLSRIAIELKLGEHILLGKGEKASGGKYKESLLCDIF 125

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           ES++AA+YLDGG   A   + +++  R  +        DAK+ELQ+ +  KFG  P+Y V
Sbjct: 126 ESVVAAIYLDGGYGFARDIIIRHFGSRIDEDISNSSFVDAKSELQKISQRKFGTLPDYTV 185

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               GP+HD  F V V++  L   QG+  +K++AE+ AA   L++ G
Sbjct: 186 LDEKGPEHDKIFVVRVDVETLVSEQGIGKTKKSAEKDAAKNALRKLG 232


>gi|189219126|ref|YP_001939767.1| Ribonuclease III [Methylacidiphilum infernorum V4]
 gi|189185984|gb|ACD83169.1| Ribonuclease III [Methylacidiphilum infernorum V4]
          Length = 247

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 10/230 (4%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLL 59
           ++   LEK++GYAF N  LLE+ALTH S         +  ++RLEFLGD +LGL ++  L
Sbjct: 1   MQLEELEKKMGYAFKNPQLLEEALTHPSFFVESIRVNKGDFQRLEFLGDAVLGLAVTEKL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F S  EG+L+     LVS +    +A  L++  ++R+     K+      S  A+ +
Sbjct: 61  FQLFPSFDEGKLTKLRARLVSRKNLCSLASLLEIGKYLRLGKGEEKNQGRTKPSNLANAL 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL------KSGKFRRDAKTELQEWAHAKFGVTP 173
           ES+I ALYLDGG + A +F+ + +    +             ++K  LQE+   K    P
Sbjct: 121 ESVIGALYLDGGWDRAKSFIFELFNPLFMELEKDPMRFVEHENSKGLLQEFLQKKGTELP 180

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            Y++   SG  H+  + V V        +G   SK+ AE  AA E  ++ 
Sbjct: 181 IYRIVLESGEAHNKWYEVEVSWKNQVLGKGSGKSKKEAELRAAKEAFEKL 230


>gi|57238646|ref|YP_179777.1| ribonuclease III [Campylobacter jejuni RM1221]
 gi|81353160|sp|Q5HSF8|RNC_CAMJR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|57167450|gb|AAW36229.1| ribonuclease III [Campylobacter jejuni RM1221]
 gi|315059085|gb|ADT73414.1| Ribonuclease III [Campylobacter jejuni subsp. jejuni S3]
          Length = 224

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  +    LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF
Sbjct: 1   MKNI--EKLERSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E
Sbjct: 57  HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGREKPSILSDALE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++L+ G E   T   +  ++   +       +D KT+LQE    K G TP+Y+  
Sbjct: 117 AIIGAIHLEAGFEFTKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 177 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222


>gi|29377554|ref|NP_816708.1| ribonuclease III [Enterococcus faecalis V583]
 gi|255970707|ref|ZP_05421293.1| ribonuclease III [Enterococcus faecalis T1]
 gi|255974283|ref|ZP_05424869.1| ribonuclease III [Enterococcus faecalis T2]
 gi|256618145|ref|ZP_05474991.1| ribonuclease III [Enterococcus faecalis ATCC 4200]
 gi|256761074|ref|ZP_05501654.1| ribonuclease III [Enterococcus faecalis T3]
 gi|256958378|ref|ZP_05562549.1| ribonuclease III [Enterococcus faecalis DS5]
 gi|256960445|ref|ZP_05564616.1| ribonuclease III [Enterococcus faecalis Merz96]
 gi|256962935|ref|ZP_05567106.1| ribonuclease III [Enterococcus faecalis HIP11704]
 gi|257078311|ref|ZP_05572672.1| ribonuclease III [Enterococcus faecalis JH1]
 gi|257080500|ref|ZP_05574861.1| ribonuclease III [Enterococcus faecalis E1Sol]
 gi|257083236|ref|ZP_05577597.1| ribonuclease III [Enterococcus faecalis Fly1]
 gi|257088212|ref|ZP_05582573.1| ribonuclease III [Enterococcus faecalis D6]
 gi|257091337|ref|ZP_05585698.1| ribonuclease III [Enterococcus faecalis CH188]
 gi|257417226|ref|ZP_05594220.1| ribonuclease III [Enterococcus faecalis AR01/DG]
 gi|257417943|ref|ZP_05594937.1| ribonuclease III [Enterococcus faecalis T11]
 gi|257420449|ref|ZP_05597439.1| ribonuclease III [Enterococcus faecalis X98]
 gi|294780225|ref|ZP_06745597.1| ribonuclease III [Enterococcus faecalis PC1.1]
 gi|300861565|ref|ZP_07107649.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11]
 gi|75541427|sp|Q82ZG1|RNC_ENTFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|29345021|gb|AAO82778.1| ribonuclease III [Enterococcus faecalis V583]
 gi|255961725|gb|EET94201.1| ribonuclease III [Enterococcus faecalis T1]
 gi|255967155|gb|EET97777.1| ribonuclease III [Enterococcus faecalis T2]
 gi|256597672|gb|EEU16848.1| ribonuclease III [Enterococcus faecalis ATCC 4200]
 gi|256682325|gb|EEU22020.1| ribonuclease III [Enterococcus faecalis T3]
 gi|256948874|gb|EEU65506.1| ribonuclease III [Enterococcus faecalis DS5]
 gi|256950941|gb|EEU67573.1| ribonuclease III [Enterococcus faecalis Merz96]
 gi|256953431|gb|EEU70063.1| ribonuclease III [Enterococcus faecalis HIP11704]
 gi|256986341|gb|EEU73643.1| ribonuclease III [Enterococcus faecalis JH1]
 gi|256988530|gb|EEU75832.1| ribonuclease III [Enterococcus faecalis E1Sol]
 gi|256991266|gb|EEU78568.1| ribonuclease III [Enterococcus faecalis Fly1]
 gi|256996242|gb|EEU83544.1| ribonuclease III [Enterococcus faecalis D6]
 gi|257000149|gb|EEU86669.1| ribonuclease III [Enterococcus faecalis CH188]
 gi|257159054|gb|EEU89014.1| ribonuclease III [Enterococcus faecalis ARO1/DG]
 gi|257159771|gb|EEU89731.1| ribonuclease III [Enterococcus faecalis T11]
 gi|257162273|gb|EEU92233.1| ribonuclease III [Enterococcus faecalis X98]
 gi|294452768|gb|EFG21198.1| ribonuclease III [Enterococcus faecalis PC1.1]
 gi|295114417|emb|CBL33054.1| RNAse III [Enterococcus sp. 7L76]
 gi|300849026|gb|EFK76779.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11]
          Length = 230

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 110/228 (48%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M     + L++R G  F + +LLE+A THSS  + ++       ERLEFLGD +L L++S
Sbjct: 1   MDNQLTTELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  F    EG+L+    ++V  ++ ++ A+E    ++I +             S+  
Sbjct: 61  QYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD  +  A  F++     +          D KT+LQE    K  V+ EY
Sbjct: 121 DLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHEMDHKTQLQEVLQRKGDVSIEY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++    GP HD  F   V ++G     G   SK+ AEQ AA   LK  
Sbjct: 181 RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSI 228


>gi|307244287|ref|ZP_07526402.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678]
 gi|306492437|gb|EFM64475.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678]
          Length = 235

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 3/222 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63
               E++IGY F N++ ++ ALTHSS ++ ++E    ERLEFLGD +LGL++S  LF   
Sbjct: 12  IRAFEEKIGYEFKNKTYIQTALTHSSFANEHKEFNYNERLEFLGDSVLGLVVSDYLFRAR 71

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           +   EG+L+    ++V  E+ S VAR+++L   + +    +    S   SI AD  E++I
Sbjct: 72  NDLPEGKLTRLRANVVCEESLSAVARKINLGDHLFLGKGEKTSGGSDRDSILADATEAVI 131

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AA+YLDGG + A  F+    +    K+           + +           YK+   SG
Sbjct: 132 AAIYLDGGFDQAKDFILSNLRDTIAKNIDGNIFRDYKTILQEIIQGNNGKISYKLVGESG 191

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH+  F + V+        G   +K+ AE+ AA + L + G
Sbjct: 192 PDHNKEFEMQVKCGQDTIGIGKGKNKKEAEKEAARDALVKMG 233


>gi|150395906|ref|YP_001326373.1| ribonuclease III [Sinorhizobium medicae WSM419]
 gi|189043356|sp|A6U7A8|RNC_SINMW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|150027421|gb|ABR59538.1| Ribonuclease III [Sinorhizobium medicae WSM419]
          Length = 238

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 132/225 (58%), Positives = 164/225 (72%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +A   + LE  IGY FA +  L++ALTHSS       +Y+RLEFLGDRILGL ++ LLF 
Sbjct: 7   NAEDRARLEAAIGYQFAEKERLDRALTHSSARSGRAINYQRLEFLGDRILGLCVAELLFQ 66

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A EGELSVR N LVSAE+C++VA EL L  FIR  SD++K     M +++ADVVES
Sbjct: 67  TFSDANEGELSVRLNQLVSAESCAKVADELSLHEFIRTGSDVKKITGKHMMNVRADVVES 126

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           LIAA+YLDGG+E A  FV ++W  RA  +   RRDAKTELQEWAHA+FGV P+Y+   RS
Sbjct: 127 LIAAIYLDGGLEAARRFVLEHWTHRAASADGARRDAKTELQEWAHARFGVAPKYRTEDRS 186

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           GPDHDPRFTV VE+ G+ P  G+D SKR AEQVAA ++L+REG+W
Sbjct: 187 GPDHDPRFTVTVEVDGIDPETGVDRSKRGAEQVAAMKLLEREGVW 231


>gi|114706260|ref|ZP_01439162.1| ribonuclease III [Fulvimarina pelagi HTCC2506]
 gi|114538121|gb|EAU41243.1| ribonuclease III [Fulvimarina pelagi HTCC2506]
          Length = 234

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 116/223 (52%), Positives = 154/223 (69%), Gaps = 2/223 (0%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            + LEKRIG  F++   L++ALTHSS   S     SYERLEFLGDR+LGL+++  LF  F
Sbjct: 8   LAELEKRIGVRFSDHDRLQRALTHSSFRSSKGDGRSYERLEFLGDRVLGLVVADKLFEMF 67

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +A EGELS+R NSLV+AETC+ VA E+ L  F+R   DLRK   S   SI+AD++ESLI
Sbjct: 68  PNADEGELSLRLNSLVNAETCAAVADEIGLYEFVRQGGDLRKLAASRTKSIRADLMESLI 127

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AA+YL+ G++ A  F++ +W +R  KS   RRD KT LQEWAH +    P+Y+V  RSGP
Sbjct: 128 AAIYLNSGLDDARAFIESHWGERLNKSVAARRDPKTALQEWAHQRGPEPPKYEVVDRSGP 187

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           DH+P+F + V I+G+ P++G   SKR AEQ AA  +L RE +W
Sbjct: 188 DHNPKFRIKVSIAGVDPSEGEGSSKRLAEQSAATAMLIRENVW 230


>gi|110801795|ref|YP_699005.1| ribonuclease III [Clostridium perfringens SM101]
 gi|110682296|gb|ABG85666.1| ribonuclease III [Clostridium perfringens SM101]
          Length = 241

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/227 (35%), Positives = 120/227 (52%), Gaps = 4/227 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLL 59
             +    +EK IG  F N+ +L  ALTHSS ++ +++    ERLEFLGD +L L ++  L
Sbjct: 6   KDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKYL 65

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           FN++    EGEL+     +V   +  +V++ L L  +IR+S           TSIQAD +
Sbjct: 66  FNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADAL 125

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++IAA+YLD GIEVA  F+ + +K       + +   D KT LQE       V   Y +
Sbjct: 126 EAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYNL 185

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               GP H  +F   + I+     QG+  SK+ +EQ AA   L+R G
Sbjct: 186 VKHEGPPHRRKFFTDLLINNEVMGQGVGFSKKESEQNAAKAALQRLG 232


>gi|297620496|ref|YP_003708633.1| ribonuclease III [Waddlia chondrophila WSU 86-1044]
 gi|297375797|gb|ADI37627.1| ribonuclease III [Waddlia chondrophila WSU 86-1044]
          Length = 252

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/232 (34%), Positives = 122/232 (52%), Gaps = 9/232 (3%)

Query: 1   MSALR-----YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILG 52
           M+ L+      S +E +IG+ F ++ LL  A TH S  +   +     ERLE+LGD ILG
Sbjct: 10  MNDLKELLSLSSEIEAKIGHTFKDKQLLSLAFTHRSYINENNDAHEHNERLEYLGDSILG 69

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
            LI+  L+ +  +  EGELS   + LV A +C    ++LDL  ++ +    + +      
Sbjct: 70  FLIAEYLYKYLPNTPEGELSYLRSRLVEASSCVIYVQKLDLEQYLLLGKGEQMNDGRGRD 129

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGV 171
           SI AD+ ESLI A+YLDGG++ A  F+ K + +   +  K    + K +LQ++   K+  
Sbjct: 130 SILADLFESLIGAIYLDGGMDAARLFLFKNFSKEIEEILKTPICNWKAQLQDYCQKKYRH 189

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            P YKV   SGPDH   FT+ V I+      G   SK+ A+Q AA +   R 
Sbjct: 190 PPLYKVVSESGPDHQKIFTISVLINNQEVGHGEGPSKKEAQQAAAKDAFSRI 241


>gi|306833964|ref|ZP_07467088.1| ribonuclease III [Streptococcus bovis ATCC 700338]
 gi|304423965|gb|EFM27107.1| ribonuclease III [Streptococcus bovis ATCC 700338]
          Length = 228

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M AL  + L++  G  F +++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MQALD-TKLQQDFGIVFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R      FI++ +   K       +I  
Sbjct: 60  QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL +D G+E    F+++    +  K + +  +D KT LQE       VT +Y
Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELLQGHGDVTIDY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +V+  SGP H   F V V ++  A +QG+  SK+ AEQ AA   L
Sbjct: 180 RVSNESGPAHAKVFEVTVYVNDKAKSQGIGKSKKLAEQDAAKNAL 224


>gi|332981630|ref|YP_004463071.1| ribonuclease III [Mahella australiensis 50-1 BON]
 gi|332699308|gb|AEE96249.1| ribonuclease III [Mahella australiensis 50-1 BON]
          Length = 228

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNH 62
           R   L   +GY F + + L++ALTHSS ++ +   Y  ERLE LGD +L ++I+  LF  
Sbjct: 3   RLKELMDLLGYRFNDINKLDEALTHSSYAYEHGLDYYNERLELLGDSVLNIIITDYLFVT 62

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG LS   +++VS +   +VA  ++L S++ +S   +        S  AD VE++
Sbjct: 63  YPELSEGNLSKLRSNIVSEKPLYKVAAAMNLGSYLLLSRGEKLSHGDMRPSTLADTVEAI 122

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLDGG + A  FV         ++       D K+ELQE          +Y++   
Sbjct: 123 IGAVYLDGGFDAAKVFVLSLLAPIIEETAAISNFNDYKSELQERLQIDGYSDIKYEIIRE 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GPDHD  F   V++ G    +G   SK+ AEQ AA + L   
Sbjct: 183 EGPDHDKMFFAEVKVDGKPVGRGSGRSKKDAEQKAAQQALSEL 225


>gi|1389549|dbj|BAA10976.1| ORF3 [Bacillus subtilis]
          Length = 266

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 108/224 (48%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  LF
Sbjct: 19  QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLF 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG+L+    ++V   +   +A EL     + +             ++ ADV E
Sbjct: 79  PKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G+E   +F+  Y   +          D K++LQE+       + EYK++ 
Sbjct: 139 AFIGALYLDQGLEPVESFLKVYVFPKINDGAFPHVMDFKSQLQEYVQRDGKGSLEYKISN 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H+  F  +V + G     G   SK+ AEQ AA E L + 
Sbjct: 199 EKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAKL 242


>gi|257126255|ref|YP_003164369.1| ribonuclease III [Leptotrichia buccalis C-1013-b]
 gi|257050194|gb|ACV39378.1| ribonuclease III [Leptotrichia buccalis C-1013-b]
          Length = 232

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 6/228 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTL 58
                 L K+IGY F N+  LE+ALTH S S+      + + E+LEFLGD IL L+ +  
Sbjct: 4   RKNSKDLIKKIGYEFKNKKYLEEALTHRSYSNEAEKTRRFNNEKLEFLGDAILNLITTEY 63

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +++ +    EGEL+   + ++S    S +A ++ L  ++ +S+           SI  D 
Sbjct: 64  IYDLYGKKTEGELAKLKSQIISEPVFSTIASDIKLGEYLYLSNGEIMSGGRNRRSILGDA 123

Query: 119 VESLIAALYLDGGIEVAGTFVDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            E+LI A++ D     A     K+   K   L+  +   D KT LQE+   K+   PEYK
Sbjct: 124 FEALIGAIFKDSDYYTAKNVALKFLLGKINKLEEIEGTGDYKTILQEFVQGKYKKMPEYK 183

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +    GPDH+  F + V  +      G   SK+ AE+ AA E L++  
Sbjct: 184 LLRTKGPDHNKVFEICVRWNDKIYGIGTGKSKKEAEKHAAKEALEKLK 231


>gi|257468859|ref|ZP_05632953.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185]
 gi|317063109|ref|ZP_07927594.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185]
 gi|313688785|gb|EFS25620.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185]
          Length = 235

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 123/233 (52%), Gaps = 8/233 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIS 56
           M    Y  LE  +GY+F N+ LL+ +L H S  + +    + S ERLE LGD +L L+++
Sbjct: 1   MKR-NYLELEGNLGYSFNNKELLKNSLIHRSFGNEHWRYKKISNERLELLGDAVLDLVVT 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+   +S+ EG+L+   + +VS    + +++++D+  ++ +S           +SI  
Sbjct: 60  EYLYKSHESSTEGDLAKIKSMVVSEPVLASISKKMDVGKYLLLSKGEEMTGGRERSSILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+++ A+YLD   E A  +   + +       K     D KT LQE++  ++ + P 
Sbjct: 120 DAFEAILGAIYLDSDFETAKKYALSHIQDSIDHVDKNEDILDFKTILQEYSQREYKIIPS 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           Y+V   +GPDH   F + V+I      +G   +K++AEQ AA E+ K+ G+ T
Sbjct: 180 YEVIRETGPDHQKIFEIEVKIGDRT-GRGTGKNKKSAEQSAAKELCKKLGVKT 231


>gi|34558193|ref|NP_908008.1| ribonuclease III [Wolinella succinogenes DSM 1740]
 gi|81653364|sp|Q7M840|RNC_WOLSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|34483912|emb|CAE10908.1| RIBONUCLEASE III [Wolinella succinogenes]
          Length = 238

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M ++     EKR+GY F N++LL +ALTH S    Y  + ERLEFLGD +L L+I   LF
Sbjct: 1   MESI--EEFEKRLGYRFQNKNLLIEALTHKSYKKPY--NNERLEFLGDAVLDLVIGEFLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    SLV+ +  +++A  + L   I +S+    +      S+ ++  E
Sbjct: 57  LKFPKADEGELSKMRASLVNEKGFAKLAERVSLGRHIFISNAEENNKGREKPSLLSNAFE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVT 178
           + + A+YL+ G+ V    V +   +   K       RD KT LQE   AKFG TPEY + 
Sbjct: 117 ATMGAIYLETGLSVVREVVHRLLDEVYPKIDLGSLFRDYKTALQELTQAKFGETPEYVIL 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             SGPDH   F V V + G   A+    SK+ A+Q AA   L+
Sbjct: 177 GSSGPDHKKEFEVAVCVLGSEYARACGSSKKEAQQEAARIALE 219


>gi|239948355|ref|ZP_04700108.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922631|gb|EER22655.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 567

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 115/228 (50%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M +  +  LEK + Y+F N+ LL +AL+H S+   ++    + YERLEFLGD +L L+I+
Sbjct: 1   MES--FEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVIT 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +LF +F +  EG L+   + LV  ET   V  +L L  +I ++            +   
Sbjct: 59  EILFKNFANYNEGNLAKIRSYLVCKETICMVGAKLALKDYIIMTHGEEVVGGRDNPNNIE 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +  E+LIAA+YLD  IE     + K W++          D KT LQEWA A     P Y+
Sbjct: 119 NATEALIAAIYLDSNIETTHNIIGKLWEEFIKVQNLTDYDPKTALQEWAQASDHHLPIYR 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  R G  H   FTV+V++       G   S + AE+ AA  +L R  
Sbjct: 179 LIKREGAAHSSTFTVLVKVKDYEQ-TGTGHSIKEAEKNAARSLLHRLK 225


>gi|170749855|ref|YP_001756115.1| ribonuclease III [Methylobacterium radiotolerans JCM 2831]
 gi|170656377|gb|ACB25432.1| Ribonuclease III [Methylobacterium radiotolerans JCM 2831]
          Length = 259

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 90/220 (40%), Positives = 131/220 (59%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + LE+RIG++F ++ LL +ALTH+S +     SY+RLEFLGDR+LGL ++  L+  F  
Sbjct: 28  LTALEERIGHSFGDQDLLTRALTHTSKASGRGGSYQRLEFLGDRVLGLAVADRLYGAFPE 87

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EG+LS R  +LV  ETC+ VA   ++   + +             +I ADV E+++ A
Sbjct: 88  ADEGDLSRRLAALVRRETCAAVAASWEVGPHLILGQGEVMGGGRRNQTILADVCEAILGA 147

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +YLD G + A   V+ +++     +    RDAK+ LQEWA  +    P Y V  R+GPDH
Sbjct: 148 IYLDAGFDAARAVVETHFRPGEPTAAARGRDAKSALQEWAMGRSLPIPTYAVVERTGPDH 207

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            PRF + V++ GL P  G   SKR AEQ AA  +++REGI
Sbjct: 208 APRFRIAVQVEGLEPGLGDGTSKRIAEQAAARALMEREGI 247


>gi|121613213|ref|YP_001001278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
 gi|121504230|gb|EAQ72743.2| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 225

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF
Sbjct: 1   MMK-NIEKLERSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E
Sbjct: 58  HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++L+ G E A T   +  ++   +       +D KT+LQE    K G TP+Y+  
Sbjct: 118 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 178 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 223


>gi|241203889|ref|YP_002974985.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857779|gb|ACS55446.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 239

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 131/222 (59%), Positives = 169/222 (76%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + LE  IG+ FA +  L++ALTH+S       +YERLEFLGDR+LGL I+ LLF  F 
Sbjct: 11  DRAKLEALIGHDFAEKERLDRALTHASARTEKGGNYERLEFLGDRVLGLCIAELLFRTFG 70

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +A EGELSVR N LVSAETC+ VA EL+L  +IR  +D++K     M +++ADVVESLIA
Sbjct: 71  TAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVESLIA 130

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG+EVA  F+ +YW+ RA+++   +RDAKTELQEW+HAKFGVTP Y+V  RSGPD
Sbjct: 131 AIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDERSGPD 190

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           HDPRF V VE++G+ P  G++ SKRAAEQVAA ++L+REGIW
Sbjct: 191 HDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232


>gi|190571469|ref|YP_001975827.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|238056573|sp|B3CMS0|RNC_WOLPP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|190357741|emb|CAQ55192.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
          Length = 230

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 83/231 (35%), Positives = 128/231 (55%), Gaps = 5/231 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M  L   T+ K I Y F + ++LE+ALTH S++    E    SYERLEFLGD +L +++S
Sbjct: 1   MRVLN-DTISKVINYKFTDYAILEEALTHPSVNKRNSEDQVVSYERLEFLGDSVLNMVVS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +LF  F   KEG L+ R   LV   T + VA+E++L +FI +++  R +          
Sbjct: 60  VMLFKMFPEEKEGALAKRKTDLVCGSTIANVAKEIELGNFIIMNNSERCNGGKCNLKNLE 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + +E+LI A+Y+DGG+E    F+ ++W++ A       +D KT LQEW        P+Y+
Sbjct: 120 NSLEALIGAIYIDGGLESVEKFIIRHWEKLAKDILDPPQDPKTSLQEWTQRNKLPLPKYE 179

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +  ++GP H+P FT+ V I           SK+ AEQ AA  +L++    T
Sbjct: 180 LVKQTGPAHNPEFTISVCIESYDKVSACAPSKKIAEQKAAELILEKIKKTT 230


>gi|163814044|ref|ZP_02205436.1| hypothetical protein COPEUT_00197 [Coprococcus eutactus ATCC 27759]
 gi|158450493|gb|EDP27488.1| hypothetical protein COPEUT_00197 [Coprococcus eutactus ATCC 27759]
          Length = 232

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 113/227 (49%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+   Y  LEK+IGY F + +LL  ALTH+S ++  +    +SYERLEFLGD IL  ++S
Sbjct: 4   MNR-NYDELEKKIGYQFKDINLLITALTHTSFANELKVNKTDSYERLEFLGDAILEYIVS 62

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF      +EG L+    SLV   T SQ++  L    ++R+S            SI  
Sbjct: 63  EYLFLKKKEYEEGRLTKLRASLVCEFTLSQISESLGYGDYVRLSKGEELTGGRKRKSILC 122

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D+ ES++ A+YLDGGIE A  FV ++          F         +    K G    Y+
Sbjct: 123 DLFESVLGAMYLDGGIEPAKEFVHRFLLDDVETKSLFYD--AKSTLQEFCQKHGRQLSYE 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GP+H   F     I+G   A+G   +++ +EQ+AA + L + 
Sbjct: 181 LIEERGPEHSKIFVSDAVINGKVTARGEGPNRKTSEQMAAYKTLLQL 227


>gi|205355648|ref|ZP_03222418.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346425|gb|EDZ33058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 225

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF
Sbjct: 1   MMK-NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E
Sbjct: 58  HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDTLE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++L+ G E A T   +  ++   +       +D KT+LQE    K G TP+Y+  
Sbjct: 118 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 178 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 223


>gi|110798679|ref|YP_696405.1| ribonuclease III [Clostridium perfringens ATCC 13124]
 gi|110673326|gb|ABG82313.1| ribonuclease III [Clostridium perfringens ATCC 13124]
          Length = 241

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/227 (35%), Positives = 120/227 (52%), Gaps = 4/227 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLL 59
             +    +EK IG  F N+ +L  ALTHSS ++ +++    ERLEFLGD +L L ++  L
Sbjct: 6   KDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKYL 65

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           FN++    EGEL+     +V   +  +V++ L L  +IR+S           TSIQAD +
Sbjct: 66  FNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADAL 125

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++IAA+YLD GIEVA  F+ + +K       + +   D KT LQE       V   Y +
Sbjct: 126 EAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYNL 185

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               GP H  +F   + I+     QG+  SK+ +EQ AA   L+R G
Sbjct: 186 VKHEGPPHRRKFFTDLLINNEIMGQGVGFSKKESEQNAAKAALQRLG 232


>gi|126654291|ref|ZP_01726068.1| ribonuclease III [Bacillus sp. B14905]
 gi|126589255|gb|EAZ83416.1| ribonuclease III [Bacillus sp. B14905]
          Length = 254

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
           ++  L+  +   F N++LL +A THSS  + ++       ERLEFLGD +L L +S  LF
Sbjct: 22  QFELLQHELNITFVNKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EGEL+    S+V   +    A EL    F+ +             ++ ADV E
Sbjct: 82  EKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           S + ALYLD  ++   +F+++    +          D K++LQE           Y++  
Sbjct: 142 SFVGALYLDQDLQTVVSFLERIVFPKVEVGAFSHVMDFKSQLQEMVQQTNNGLLHYEIID 201

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H+  F   V ++G     G   SK+ AEQ AA   ++  
Sbjct: 202 EKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAAQCAMRMM 245


>gi|325292414|ref|YP_004278278.1| ribonuclease III [Agrobacterium sp. H13-3]
 gi|325060267|gb|ADY63958.1| ribonuclease III [Agrobacterium sp. H13-3]
          Length = 237

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 130/232 (56%), Positives = 166/232 (71%), Gaps = 6/232 (2%)

Query: 1   MSALR------YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54
           MS  +       S LE  IGY F  ++ L++ALTH+S   +   +YERLEFLGDR+LGL 
Sbjct: 1   MSKTKPLSIAEISRLEALIGYEFKEKARLDRALTHASARSAAAGNYERLEFLGDRVLGLC 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           ++ LLF+ F +A EGELSVR N LVSAE+C+ +  E+ L +FIR  SD++K     M ++
Sbjct: 61  VAELLFSTFRNASEGELSVRLNQLVSAESCAAIGDEMGLHNFIRTGSDVKKLTGKAMLNV 120

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           +ADVVESLIA LYLDGG+E +  F+ KYW+ RA +    RRDAKTELQEWAHA+F VTP 
Sbjct: 121 RADVVESLIATLYLDGGLEASRKFILKYWQGRATRVDAGRRDAKTELQEWAHARFAVTPA 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           Y+V  RSGPDHDP FTV VEI G+ P  G++ SKRAAEQVAA  +L+REG+W
Sbjct: 181 YRVDDRSGPDHDPSFTVTVEIPGVKPETGVERSKRAAEQVAATRLLEREGVW 232


>gi|253581846|ref|ZP_04859070.1| ribonuclease III [Fusobacterium varium ATCC 27725]
 gi|251836195|gb|EES64732.1| ribonuclease III [Fusobacterium varium ATCC 27725]
          Length = 235

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 8/233 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIS 56
           M    Y  LE  +GY+F N+ LL+ +L H S  + +    + S ERLE LGD +L L+++
Sbjct: 1   MKK-NYLELEGNLGYSFNNKELLKNSLIHRSFGNEHWRYKKISNERLELLGDAVLDLVVT 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+   +S+ EG+L+   + +VS    + +++++D+  ++ +S           +SI  
Sbjct: 60  EYLYKSHESSTEGDLAKIKSMVVSEPVLASISKKMDVGKYLLLSKGEEMTGGRERSSILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+++ A+YLD   E A  +   + K       K     D KT LQE++  ++ + P 
Sbjct: 120 DAFEAILGAIYLDSDFETAKKYALSHIKDSIDHVDKNEDILDFKTILQEYSQREYKIIPS 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           Y+V   +GPDH   F + V I G    +G   +K++AEQ AA E+ K+ G+ T
Sbjct: 180 YEVIRETGPDHQKVFEIEVRI-GERTGRGTGKNKKSAEQSAAKELCKKLGVKT 231


>gi|297343244|pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
           Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
 gi|297343245|pdb|3N3W|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
           Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
          Length = 248

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  +    LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF
Sbjct: 25  MKNI--EKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 80

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E
Sbjct: 81  HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALE 140

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++L+ G E A T   +  ++   +       +D KT+LQE    K G TP+Y+  
Sbjct: 141 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 200

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 201 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 246


>gi|169827094|ref|YP_001697252.1| ribonuclease 3 [Lysinibacillus sphaericus C3-41]
 gi|168991582|gb|ACA39122.1| Ribonuclease 3 [Lysinibacillus sphaericus C3-41]
          Length = 254

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
           ++  L+  +   F N++LL +A THSS  + ++       ERLEFLGD +L L +S  LF
Sbjct: 22  QFELLQHELNITFINKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EGEL+    S+V   +    A EL    F+ +             ++ ADV E
Sbjct: 82  EKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           S + ALYLD  ++   +F+++    +          D K++LQE           Y++  
Sbjct: 142 SFVGALYLDQDLQTVVSFLERIVFPKVEVGAFSHVMDFKSQLQEMVQQTNNGLLHYEIID 201

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H+  F   V ++G     G   SK+ AEQ AA   ++  
Sbjct: 202 EKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAAQCAMRMM 245


>gi|299821773|ref|ZP_07053661.1| ribonuclease III [Listeria grayi DSM 20601]
 gi|299817438|gb|EFI84674.1| ribonuclease III [Listeria grayi DSM 20601]
          Length = 230

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M   ++  L++ +G+ F N  LL++A THSS  + +++      ERLEFLGD +L L +S
Sbjct: 1   MD--KWEELQESVGFTFENVGLLQEAFTHSSYVNEHRKEKLNDNERLEFLGDAVLELTVS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  + +  EG+L+    ++V   +  + A  +  + +IR+ +   K       ++ A
Sbjct: 59  DYLFQKYPNLAEGQLTKMRAAIVCEPSLVEFAENIHFSKYIRLGNGEEKAGGRTRPALLA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           DV ES I ALYLD G++    F+++    +          D KT+LQE       V  +Y
Sbjct: 119 DVFESFIGALYLDNGLKNVIRFLERVIFPKIDTGAFLETVDHKTQLQEIVQRDRDVLIQY 178

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +   SGP H   F   V ++G    +G   +K+ AEQ AA E + + 
Sbjct: 179 DILEESGPAHSKAFEAQVVVNGQMLGRGEGRTKKQAEQNAAKEAINKL 226


>gi|306825115|ref|ZP_07458457.1| ribonuclease III [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432551|gb|EFM35525.1| ribonuclease III [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 232

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 113/230 (49%), Gaps = 7/230 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+KR    FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +  +D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR-EG 224
           +VT  +GP HD  F V V + G +  +G   SK+ AEQ AA   +++  G
Sbjct: 180 QVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEKGLG 229


>gi|195978496|ref|YP_002123740.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975201|gb|ACG62727.1| ribonuclease III Rnc [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 231

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M     + LE      F ++ LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MMKKLEALLENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG++S   +++V  E+ +  +R     ++I++     K       +I  
Sbjct: 61  EYLFAKYPKQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGKGEEKSGGRHRETILG 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD GIE    F+++    +  + + +  +D KT LQE   AK  V  +Y
Sbjct: 121 DLFEAFLGALLLDKGIEEVRRFLNQVMIPQVEQGTFEKVKDYKTCLQELLQAKGDVVIDY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +V   +GP H  +F V V +     ++G   SK+ AEQ AA   L + 
Sbjct: 181 QVISETGPAHAKQFEVAVLVDEDRLSKGTGRSKKLAEQDAAKNALAQL 228


>gi|260890105|ref|ZP_05901368.1| hypothetical protein GCWU000323_01267 [Leptotrichia hofstadii
           F0254]
 gi|260860128|gb|EEX74628.1| ribonuclease III [Leptotrichia hofstadii F0254]
          Length = 243

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 112/226 (49%), Gaps = 6/226 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
               L ++IGY F N   LE+ALTH S S+  ++    + E+LEFLGD +L L+ +  ++
Sbjct: 8   DAKELMQKIGYEFKNEEYLEEALTHRSYSNETEKDRRFNNEKLEFLGDAVLNLITTEYIY 67

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             ++   EGEL+   + ++S    S +A +++L  ++ +S+           SI  D  E
Sbjct: 68  ELYEKKTEGELAKLKSQIISEPVFSTIASDIELGEYLYLSNGEIMSGGRNRRSILGDAFE 127

Query: 121 SLIAALYLDGGIEVAGTFVDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A++ D     A     K    K   L+  +   D KT LQE+   K+   PEYK+ 
Sbjct: 128 ALIGAIFKDSDYYTAKNVALKLLLGKINKLEEIEGTGDYKTVLQEFVQGKYRKMPEYKLL 187

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDHD  F + V  +      G+  SK+ AE+ AA E L +  
Sbjct: 188 NTKGPDHDKVFEISVSWNDKIYGVGIGKSKKEAEKHAAKEALVKLK 233


>gi|295706311|ref|YP_003599386.1| ribonuclease III [Bacillus megaterium DSM 319]
 gi|294803970|gb|ADF41036.1| ribonuclease III [Bacillus megaterium DSM 319]
          Length = 265

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 108/231 (46%), Gaps = 8/231 (3%)

Query: 1   MS---ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGL 53
           M+      ++  +K IG  F N +LL +A THSS  + ++    E  ERLEFLGD +L L
Sbjct: 29  MNVKFKQNFAEFQKEIGIQFTNEALLFQAFTHSSYVNEHRRRPYEDNERLEFLGDAVLEL 88

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            +S  LF  + +  EGEL+    ++V   +    A E+D    + +             +
Sbjct: 89  TVSQFLFKKYPTMSEGELTKLRAAVVCEPSLVTFANEMDFGKLVLLGKGEEMTGGRSRPA 148

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVT 172
           + ADV E+ I ALYLD G++   T + K    +  +       D K++LQE         
Sbjct: 149 LLADVFEAFIGALYLDQGLDTVVTILKKVVFPKINEGAFSHVMDFKSQLQEVIQRDGVGQ 208

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            EYKV    GP H+  F   V ++G     G+  SK+ AEQ AA   + + 
Sbjct: 209 LEYKVLQEKGPAHNREFLSRVSLNGEELGVGVGRSKKEAEQKAAQVAITKI 259


>gi|294500965|ref|YP_003564665.1| ribonuclease III [Bacillus megaterium QM B1551]
 gi|294350902|gb|ADE71231.1| ribonuclease III [Bacillus megaterium QM B1551]
          Length = 248

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 108/231 (46%), Gaps = 8/231 (3%)

Query: 1   MS---ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGL 53
           M+      ++  +K IG  F N +LL +A THSS  + ++    E  ERLEFLGD +L L
Sbjct: 12  MNVKFKQNFAEFQKEIGIQFTNEALLFQAFTHSSYVNEHRRRPYEDNERLEFLGDAVLEL 71

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            +S  LF  + +  EGEL+    ++V   +    A E+D    + +             +
Sbjct: 72  TVSQFLFKKYPTMSEGELTKLRAAVVCEPSLVTFANEMDFGKLVLLGKGEEMTGGRSRPA 131

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVT 172
           + ADV E+ I ALYLD G++   T + K    +  +       D K++LQE         
Sbjct: 132 LLADVFEAFIGALYLDQGLDTVVTILKKVVFPKINEGAFSHVMDFKSQLQEVIQRDGVGQ 191

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            EYKV    GP H+  F   V ++G     G+  SK+ AEQ AA   + + 
Sbjct: 192 LEYKVLQEKGPAHNREFLSRVSLNGEELGVGVGRSKKEAEQKAAQVAITKI 242


>gi|190891073|ref|YP_001977615.1| ribonuclease III protein [Rhizobium etli CIAT 652]
 gi|218515110|ref|ZP_03511950.1| ribonuclease III [Rhizobium etli 8C-3]
 gi|238692512|sp|B3PUN8|RNC_RHIE6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|190696352|gb|ACE90437.1| ribonuclease III protein [Rhizobium etli CIAT 652]
 gi|327191322|gb|EGE58355.1| ribonuclease III protein [Rhizobium etli CNPAF512]
          Length = 239

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 131/222 (59%), Positives = 169/222 (76%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + LE  IG+ FA +  L++ALTH+S       +YERLEFLGDR+LGL I+ LLF  F 
Sbjct: 11  DRAKLESLIGHDFAEKERLDRALTHASARTEKGSNYERLEFLGDRVLGLCIAELLFRTFG 70

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +A EGELSVR N LVSAETC+ VA EL+L  +IR  +D++K     M +++ADVVESLIA
Sbjct: 71  TAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVESLIA 130

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG+EVA  F+ +YW+ RA+++   +RDAKTELQEW+HAKFGVTP Y+V  RSGPD
Sbjct: 131 AIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPLYRVDERSGPD 190

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           HDPRF V VE++G+ P  G++ SKRAAEQVAA ++L+REGIW
Sbjct: 191 HDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232


>gi|299536778|ref|ZP_07050086.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1]
 gi|298727790|gb|EFI68357.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1]
          Length = 254

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
           ++  L+  +   F N++LL +A THSS  + ++       ERLEFLGD +L L +S  LF
Sbjct: 22  QFELLQHELNITFINKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EGEL+    S+V   +    A EL    F+ +             ++ ADV E
Sbjct: 82  EKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           S + ALYLD  ++   +F+++    +          D K++LQE           Y++  
Sbjct: 142 SFVGALYLDQDLQTVVSFLERVVFPKVEVGAFSHVMDFKSQLQEMVQQTNNGLLHYEIID 201

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H+  F   V ++G     G   SK+ AEQ AA   ++  
Sbjct: 202 EKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAAQCAMRMM 245


>gi|293365563|ref|ZP_06612272.1| ribonuclease III [Streptococcus oralis ATCC 35037]
 gi|315613276|ref|ZP_07888185.1| ribonuclease III [Streptococcus sanguinis ATCC 49296]
 gi|291315931|gb|EFE56375.1| ribonuclease III [Streptococcus oralis ATCC 35037]
 gi|315314511|gb|EFU62554.1| ribonuclease III [Streptococcus sanguinis ATCC 49296]
          Length = 232

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+KR    FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +  +D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +VT  +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 180 QVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|170754285|ref|YP_001781997.1| ribonuclease III [Clostridium botulinum B1 str. Okra]
 gi|169119497|gb|ACA43333.1| ribonuclease III [Clostridium botulinum B1 str. Okra]
          Length = 234

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 1   MSALR--YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLIS 56
           M   +     L+ ++   F N  LL+ ALTHSS ++     + YERLEFLGD +L L+IS
Sbjct: 1   MKNRQDVLKELQYKLKVYFKNEKLLDVALTHSSYANGKRNIKYYERLEFLGDSVLQLIIS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  ++  KEGEL+ +   +V   +  ++A+  DL  ++++S            SI A
Sbjct: 61  EHLYQKYEDKKEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPE 174
           D VES+IAA+YLD G++ A  FV K +K+        +   D KT LQE       +T  
Sbjct: 121 DCVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTIN 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           Y++  + GP H  RF   V I       G+  SK+ AEQ AA E LK  G
Sbjct: 181 YELLKQEGPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230


>gi|159184588|ref|NP_354058.2| ribonuclease III [Agrobacterium tumefaciens str. C58]
 gi|22654057|sp|Q8UGK2|RNC_AGRT5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|159139890|gb|AAK86843.2| ribonuclease III [Agrobacterium tumefaciens str. C58]
          Length = 239

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 129/232 (55%), Positives = 164/232 (70%), Gaps = 6/232 (2%)

Query: 1   MSALR------YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54
           MS  +       S LE  IGY F  ++ L++ALTH+S   +   +YERLEFLGDR+LGL 
Sbjct: 1   MSKTKPLSADEISRLEALIGYEFKEKARLDRALTHASARSAAAGNYERLEFLGDRVLGLC 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           ++ LLF+ F +A EGELSVR N LVSAE+C+ +  E+ L +FIR  SD++K     M ++
Sbjct: 61  VAELLFSTFRNASEGELSVRLNQLVSAESCAAIGDEMGLHNFIRTGSDVKKLTGKAMLNV 120

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           +ADVVESLIA LYLDGG+E +  F+ KYW+ RA      RRDAKTELQEWAHA+F  TP 
Sbjct: 121 RADVVESLIATLYLDGGLEASRKFILKYWQGRATSVDAGRRDAKTELQEWAHARFAATPA 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           Y+V  RSGPDHDP FTV VEI G+ P  G++ SKRAAEQVAA  +L+REG+W
Sbjct: 181 YRVDDRSGPDHDPSFTVTVEIPGVKPETGVERSKRAAEQVAATRLLEREGVW 232


>gi|86152963|ref|ZP_01071168.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|167006173|ref|ZP_02271931.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
 gi|85843848|gb|EAQ61058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 224

 Score =  153 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  +    LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF
Sbjct: 1   MKNI--EKLERSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E
Sbjct: 57  HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++L+ G E A T   +  ++   +       +D KT+LQE    K G TP+Y+  
Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 177 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222


>gi|313890255|ref|ZP_07823889.1| ribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121360|gb|EFR44465.1| ribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
          Length = 230

 Score =  153 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L++     F ++ LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MKKLK-ALLKETFNIVFNDQDLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  + S  EG+LS   + +V  E+ +  +R     ++I++     K       +I  
Sbjct: 60  EYLFKKYPSKPEGDLSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD GIE    F+++    +  K + +  +D KT LQE   AK  V  +Y
Sbjct: 120 DLFEAFLGALLLDKGIEDVRLFLNQVMIPQVEKGNFEKVKDYKTSLQEVLQAKGDVQIDY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +V   SGP H  +F V + ++    ++G+  SK+ AEQ AA + L+  
Sbjct: 180 QVVKESGPAHAKQFEVAILVNQEIISRGIGKSKKIAEQNAAKKALEHL 227


>gi|288905744|ref|YP_003430966.1| Ribonuclease III [Streptococcus gallolyticus UCN34]
 gi|306831841|ref|ZP_07464997.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978776|ref|YP_004288492.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288732470|emb|CBI14042.1| Ribonuclease III [Streptococcus gallolyticus UCN34]
 gi|304426039|gb|EFM29155.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325178704|emb|CBZ48748.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 228

 Score =  153 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M AL  + L++  G  F +++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MQALD-TKLQRDFGIVFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R      FI++ +   K       +I  
Sbjct: 60  QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL +D G+E    F+++    +  K + +  +D KT LQE       VT +Y
Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELLQGHGDVTIDY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +V+  SGP H   F V V ++  A +QG+  SK+ AEQ AA   L
Sbjct: 180 RVSNESGPAHAKVFEVTVYVNDEAKSQGIGRSKKLAEQDAAKNAL 224


>gi|86152331|ref|ZP_01070542.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315125039|ref|YP_004067043.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|85840820|gb|EAQ58071.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315018761|gb|ADT66854.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
          Length = 224

 Score =  153 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  +    LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF
Sbjct: 1   MKNI--EKLERSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG+LS    +LV+ ++ +++A  L+L  FI +S   + +      SI +D +E
Sbjct: 57  HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEKNNGGKEKPSILSDALE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++L+ G E A T   +  ++   +       +D KT+LQE    K G TP+Y+  
Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 177 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222


>gi|153951733|ref|YP_001398912.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
 gi|189043301|sp|A7H5Y2|RNC_CAMJD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|152939179|gb|ABS43920.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
          Length = 225

 Score =  153 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  +    LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF
Sbjct: 1   MKNI--EKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E
Sbjct: 57  HKFTKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++L+ G E A T   +  ++   +       +D KT+LQE    K G TP+Y+  
Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLMEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 177 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222


>gi|90101642|sp|Q57LD0|RNC_SALCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 226

 Score =  153 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD +E
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTME 117

Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  HD  FT+  ++SGL  P  G   S+R AEQ AA +VLK+ 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQVLKKL 223


>gi|62181146|ref|YP_217563.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62128779|gb|AAX66482.1| RNase III, ds RNA [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715636|gb|EFZ07207.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 245

 Score =  153 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 20  MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD +E
Sbjct: 77  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTME 136

Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  HD  FT+  ++SGL  P  G   S+R AEQ AA +VLK+ 
Sbjct: 197 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQVLKKL 242


>gi|15964825|ref|NP_385178.1| ribonuclease III [Sinorhizobium meliloti 1021]
 gi|307300895|ref|ZP_07580664.1| ribonuclease III [Sinorhizobium meliloti BL225C]
 gi|307320712|ref|ZP_07600124.1| ribonuclease III [Sinorhizobium meliloti AK83]
 gi|22654067|sp|Q92R47|RNC_RHIME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|15074004|emb|CAC45651.1| Probable ribonuclease III [Sinorhizobium meliloti 1021]
 gi|306893639|gb|EFN24413.1| ribonuclease III [Sinorhizobium meliloti AK83]
 gi|306903850|gb|EFN34436.1| ribonuclease III [Sinorhizobium meliloti BL225C]
          Length = 238

 Score =  153 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 131/225 (58%), Positives = 164/225 (72%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +    + LE  IGY FA +  L++ALTHSS       +Y+RLEFLGDR+LGL ++ LLF 
Sbjct: 7   NTEDRARLEAAIGYRFAEKERLDRALTHSSARSGRAINYQRLEFLGDRVLGLCVAELLFQ 66

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A EGELSVR N LVSAE+C++VA EL L  FIR  SD++K     M +++ADVVES
Sbjct: 67  TFTDANEGELSVRLNQLVSAESCAKVADELSLHEFIRTGSDVKKITGKHMMNVRADVVES 126

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           LIAA+YLDGG++ A  FV ++W  RA  +   RRDAKTELQEWAHAKFGV P+Y+   RS
Sbjct: 127 LIAAIYLDGGLDAARRFVLEHWTHRAASADGARRDAKTELQEWAHAKFGVAPKYRTDDRS 186

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           GPDHDPRFTV VE+ G+AP  G+D SKR AEQVAA ++L+REG+W
Sbjct: 187 GPDHDPRFTVTVEVDGIAPETGVDRSKRGAEQVAAMKLLEREGVW 231


>gi|86357028|ref|YP_468920.1| ribonuclease III [Rhizobium etli CFN 42]
 gi|123512466|sp|Q2KAE3|RNC_RHIEC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|86281130|gb|ABC90193.1| ribonuclease III protein [Rhizobium etli CFN 42]
          Length = 239

 Score =  153 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 131/222 (59%), Positives = 169/222 (76%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + LE  IG+ FA +  L++ALTH+S       +YERLEFLGDR+LGL I+ LLF  F 
Sbjct: 11  DRAKLEALIGHDFAEKERLDRALTHASARTEKGSNYERLEFLGDRVLGLCIAELLFRTFG 70

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +A EGELSVR N LVSAETC+ VA EL+L  +IR  +D++K     M +++ADVVESLIA
Sbjct: 71  TAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVESLIA 130

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG+EVA  F+ +YW+ RA+++   +RDAKTELQEW+HAKFGVTP Y+V  RSGPD
Sbjct: 131 AIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDERSGPD 190

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           HDPRF V VE++G+ P  G++ SKRAAEQVAA ++L+REGIW
Sbjct: 191 HDPRFRVTVEVAGIKPESGVERSKRAAEQVAATKMLEREGIW 232


>gi|209548601|ref|YP_002280518.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|226741375|sp|B5ZW73|RNC_RHILW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|209534357|gb|ACI54292.1| Ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 239

 Score =  153 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 131/222 (59%), Positives = 169/222 (76%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + LE  IG+ FA +  L++ALTH+S       +YERLEFLGDR+LGL I+ LLF  F 
Sbjct: 11  DRAKLEGLIGHDFAEKERLDRALTHASARTEKGGNYERLEFLGDRVLGLCIAELLFRTFG 70

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +A EGELSVR N LVSAETC+ VA EL+L  +IR  +D++K     M +++ADVVESLIA
Sbjct: 71  TAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVESLIA 130

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG+EVA  F+ +YW+ RA+++   +RDAKTELQEW+HAKFGVTP Y+V  RSGPD
Sbjct: 131 AIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPNYRVDERSGPD 190

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           HDPRF V VE++G+ P  G++ SKRAAEQVAA ++L+REGIW
Sbjct: 191 HDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232


>gi|270292630|ref|ZP_06198841.1| ribonuclease III [Streptococcus sp. M143]
 gi|270278609|gb|EFA24455.1| ribonuclease III [Streptococcus sp. M143]
          Length = 232

 Score =  153 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 110/227 (48%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+KR    FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +   D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEVGDFEMITDYKTHLQELLQVNGDVDIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +VT   GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 180 QVTSEMGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|157415855|ref|YP_001483111.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
 gi|283957021|ref|ZP_06374493.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
 gi|189043300|sp|A8FNU7|RNC_CAMJ8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157386819|gb|ABV53134.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
 gi|283791522|gb|EFC30319.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
 gi|307748491|gb|ADN91761.1| Ribonuclease 3 [Campylobacter jejuni subsp. jejuni M1]
 gi|315931680|gb|EFV10641.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 327]
          Length = 224

 Score =  153 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  +    LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF
Sbjct: 1   MKNI--EKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E
Sbjct: 57  HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++L+ G E A T   +  ++   +       +D KT+LQE    K G TP+Y+  
Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 177 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222


>gi|167771632|ref|ZP_02443685.1| hypothetical protein ANACOL_03004 [Anaerotruncus colihominis DSM
           17241]
 gi|167666272|gb|EDS10402.1| hypothetical protein ANACOL_03004 [Anaerotruncus colihominis DSM
           17241]
          Length = 232

 Score =  153 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 83/222 (37%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63
           S LE RIGY F N   L+ ALTHSS ++  +++    ER EFLGD +L +++S  LF+ +
Sbjct: 11  SALEGRIGYTFQNGRYLDIALTHSSYANEVKKNISSNERQEFLGDAVLSIVVSDYLFHTY 70

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EG+L+    +LV  ++  + ++ L L  F+++             SI AD  E+LI
Sbjct: 71  HLA-EGDLTKLRAALVCEKSLWEFSQALGLGDFLKLGRGEEMMGGRTRPSILADAFEALI 129

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AA+YLDGGIE A  FV  Y              D KT LQE           Y +   SG
Sbjct: 130 AAIYLDGGIEPARRFVLGYIVDALENRDDLAFSDYKTMLQEIIQKNPEERLSYVLVNESG 189

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH+ +F V V ++      G   SK++AEQ AA E LK  G
Sbjct: 190 PDHNKKFLVEVRLNSNVIGVGCGGSKKSAEQAAAREALKLMG 231


>gi|254797243|ref|YP_003082085.1| ribonuclease III [Neorickettsia risticii str. Illinois]
 gi|254590493|gb|ACT69855.1| ribonuclease III [Neorickettsia risticii str. Illinois]
          Length = 222

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 3/224 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L+  +G  F N+ LL +ALTH S+      SYERLEFLGD +L L+++++L++ F
Sbjct: 1   MELEELQSLLGVHFKNKELLVEALTHPSV--EKCPSYERLEFLGDAVLNLVVASMLYDLF 58

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG LS R + LV     + +AR+++L   IR+SS          T+   +V+E+LI
Sbjct: 59  PGDPEGRLSQRQSVLVCKTALAMLARQMNLGDCIRLSSSEEASGGRDKTNNLENVLEALI 118

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++LD G E    F+ K+W + A++S     + K+ LQE   AK    P Y V  RSGP
Sbjct: 119 GAIFLDAGFETVTCFIQKHWYELAVQSDSIEPNPKSALQELLQAKGMKPPVYNVIDRSGP 178

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
            H P F V + + G    +    SK+  E+ AA  +L+     T
Sbjct: 179 AHLPIFEVEICVDGKKR-RATGRSKKLGEENAARMMLEELKAET 221


>gi|116251277|ref|YP_767115.1| ribonuclease III [Rhizobium leguminosarum bv. viciae 3841]
 gi|189043336|sp|Q1MJ54|RNC_RHIL3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|115255925|emb|CAK07006.1| putative ribonuclease III [Rhizobium leguminosarum bv. viciae 3841]
          Length = 239

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 131/222 (59%), Positives = 169/222 (76%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + LE  IG+ FA +  L++ALTH+S       +YERLEFLGDR+LGL I+ LLF  F 
Sbjct: 11  DRAKLEGLIGHDFAEKERLDRALTHASARTEKGGNYERLEFLGDRVLGLCIAELLFRTFG 70

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +A EGELSVR N LVSAETC+ VA EL+L  +IR  +D++K     M +++ADVVESLIA
Sbjct: 71  TAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVESLIA 130

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG+EVA  F+ +YW+ RA+++   +RDAKTELQEW+HAKFGVTP Y+V  RSGPD
Sbjct: 131 AIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDERSGPD 190

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           HDPRF V VE++G+ P  G++ SKRAAEQVAA ++L+REGIW
Sbjct: 191 HDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232


>gi|86149260|ref|ZP_01067491.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88596211|ref|ZP_01099448.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218563224|ref|YP_002345004.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|22654076|sp|Q9PM40|RNC_CAMJE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|85840042|gb|EAQ57300.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88191052|gb|EAQ95024.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360931|emb|CAL35732.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926829|gb|ADC29181.1| ribonuclease III [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927617|gb|EFV06948.1| ribonuclease III [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315928870|gb|EFV08132.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 305]
          Length = 224

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  +    LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF
Sbjct: 1   MKNI--EKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E
Sbjct: 57  HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++L+ G E A T   +  ++   +       +D KT+LQE    K G TP+Y+  
Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 177 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222


>gi|302670933|ref|YP_003830893.1| ribonuclease III Rnc [Butyrivibrio proteoclasticus B316]
 gi|302395406|gb|ADL34311.1| ribonuclease III Rnc [Butyrivibrio proteoclasticus B316]
          Length = 230

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57
           +       ++ IGY F N  LL +ALTHSS  +  +      YERLEFLGD IL ++ S 
Sbjct: 3   NEQEIINFQQVIGYKFKNIDLLIQALTHSSFVNEQKINKKPDYERLEFLGDAILEMVSSE 62

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  +   KEGE+S    SLV     +  A  ++L  +I++             SI AD
Sbjct: 63  YLFKKYPDKKEGEMSKIRASLVCEPALAFCAEHIELKKYIQLGKGEELTGGRNKESIIAD 122

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           V+E++I AL+LDGG++ +  F+D Y       S     D+K+ LQE+  A      +Y++
Sbjct: 123 VMEAVIGALFLDGGLQESKRFIDTYVL-TNADSMAMFNDSKSLLQEFVQAGGLGQIKYEI 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              SGP+HD  F V V I      +G   +K+AAEQ AA + L
Sbjct: 182 CGESGPEHDKIFDVRVWIGDKNMGEGTGKTKKAAEQKAAYQAL 224


>gi|225868184|ref|YP_002744132.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus]
 gi|259646553|sp|C0MCR4|RNC_STRS7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|225701460|emb|CAW98596.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus]
          Length = 230

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L  + LE      F ++ LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MKKLE-ALLENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG++S   +++V  E+ +  +R     ++I++     K       +I  
Sbjct: 60  EYLFAKYPKQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGKGEEKSGGRHRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD GIE    F+++    +  + + +  +D KT LQE   AK  V  +Y
Sbjct: 120 DLFEAFLGALLLDKGIEEVRRFLNQVMIPQVEQGTFEKVKDYKTCLQELLQAKGDVVIDY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +V   +GP H  +F V V +     ++G   SK+ AEQ AA   L + 
Sbjct: 180 QVISETGPAHAKQFEVAVLVDEDRLSKGTGRSKKLAEQDAAKNALAQL 227


>gi|153930813|ref|YP_001384630.1| ribonuclease III [Clostridium botulinum A str. ATCC 19397]
 gi|153937224|ref|YP_001388147.1| ribonuclease III [Clostridium botulinum A str. Hall]
 gi|153940610|ref|YP_001391753.1| ribonuclease III [Clostridium botulinum F str. Langeland]
 gi|168180664|ref|ZP_02615328.1| ribonuclease III [Clostridium botulinum NCTC 2916]
 gi|226949808|ref|YP_002804899.1| ribonuclease III [Clostridium botulinum A2 str. Kyoto]
 gi|152926857|gb|ABS32357.1| ribonuclease III [Clostridium botulinum A str. ATCC 19397]
 gi|152933138|gb|ABS38637.1| ribonuclease III [Clostridium botulinum A str. Hall]
 gi|152936506|gb|ABS42004.1| ribonuclease III [Clostridium botulinum F str. Langeland]
 gi|182668630|gb|EDT80609.1| ribonuclease III [Clostridium botulinum NCTC 2916]
 gi|226841844|gb|ACO84510.1| ribonuclease III [Clostridium botulinum A2 str. Kyoto]
 gi|295319777|gb|ADG00155.1| ribonuclease III [Clostridium botulinum F str. 230613]
 gi|322806720|emb|CBZ04289.1| ribonuclease III [Clostridium botulinum H04402 065]
          Length = 234

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 1   MSALR--YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLIS 56
           M   +     L+ ++   F N  LL+ ALTHSS ++     + YERLEFLGD +L L+IS
Sbjct: 1   MKNRQDVLKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIIS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  ++  KEGEL+ +   +V   +  ++A+  DL  ++++S            SI A
Sbjct: 61  EHLYQKYEDKKEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPE 174
           D VES+IAA+YLD G++ A  FV K +K+        +   D KT LQE       +T  
Sbjct: 121 DCVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTIN 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           Y++  + GP H  RF   V I       G+  SK+ AEQ AA E LK  G
Sbjct: 181 YELLKQEGPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230


>gi|322375351|ref|ZP_08049864.1| ribonuclease III [Streptococcus sp. C300]
 gi|321279614|gb|EFX56654.1| ribonuclease III [Streptococcus sp. C300]
          Length = 232

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 111/227 (48%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+KR    FA++ LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKKRFAIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPRKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +  +D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +VT  +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 180 QVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|148925776|ref|ZP_01809464.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145845786|gb|EDK22877.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 229

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF
Sbjct: 5   MMK-NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 61

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E
Sbjct: 62  HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALE 121

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++L+ G E A T   +  ++   +       +D KT+LQE    K G TP+Y+  
Sbjct: 122 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 182 RAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 227


>gi|27904735|ref|NP_777861.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29427422|sp|P59476|RNC_BUCBP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|27904132|gb|AAO26966.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 226

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      L+K +GY F  + LL +ALTH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNHTVIQKLQKILGYTFIKKDLLIQALTHRSA---NSKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++A E DL  ++++     K       SI A+ VE
Sbjct: 58  HCFPHVNEGDMSRMRATLVRGHTLAKIAYEFDLGDYLQLGQGELKSGGFRRESILANTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI +++LD  ++     + K++K R  A+     ++D KT LQE+  +K    P Y V 
Sbjct: 118 ALIGSIFLDSNLKTIEKLILKWYKNRLKAINPSDTQKDPKTRLQEYLQSKHLPLPSYLVE 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  FT+  EISG+     G+  S+R AEQ AA   L + GI
Sbjct: 178 QVYGEAHNQLFTIYCEISGINEKTIGIGSSRRKAEQEAAQNALIKLGI 225


>gi|225180933|ref|ZP_03734381.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1]
 gi|225168414|gb|EEG77217.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1]
          Length = 233

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 108/229 (47%), Gaps = 6/229 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M     + L K++     NR +  +ALTHSS +H +        ERLEFLGD +L L+IS
Sbjct: 1   MGKKDLNYLFKQLNIEPKNREIYIQALTHSSYAHEHNLGSHAHNERLEFLGDAVLELVIS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F    EG+L+     +V  ++  ++A  L+L  ++R+             S+ A
Sbjct: 61  EALFKRFPLLPEGKLTRFRAGMVCEDSLFKIANSLELGKYLRLGKGEAASGGRQRPSLLA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPE 174
           D  E+++ A+YLD G  V    V   +        K   R D KT +QE+  A    TPE
Sbjct: 121 DAFEAMLGAMYLDQGFYVVQETVTGIFAPLFEDMAKGSMRHDYKTLMQEYTQASLATTPE 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y++    GPDH   F   + ++     +G   SK+ AEQ AA    ++ 
Sbjct: 181 YRIVAEQGPDHSKVFVAQLLLNREVYGEGSGRSKKEAEQEAARVAYQQL 229


>gi|319898692|ref|YP_004158785.1| ribonuclease III [Bartonella clarridgeiae 73]
 gi|319402656|emb|CBI76202.1| ribonuclease III [Bartonella clarridgeiae 73]
          Length = 234

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 114/226 (50%), Positives = 148/226 (65%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LE+   ++F +   L+KALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 1   MKHQIIDQLERLTEHSFKDADKLKKALTHSSVQSSEQGNYERLEFLGDRVLGLLIAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +A E+ L + IRV  +++      + ++ ADV+E
Sbjct: 61  QIFPQASEGELSVRLNGLVNAQTCADIALEMGLPNMIRVGCEMKNLEGRRLANMYADVIE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YL+GG+E    F+ KYW+ RA K    RRDAKTELQEWAH K    P Y+V  R
Sbjct: 121 ALIAVIYLEGGLESVRPFIQKYWQNRAKKMNAGRRDAKTELQEWAHTKDRAHPHYQVLQR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            GPDHDP F V V I G A   G   SKR AE+ AA  +L+REGIW
Sbjct: 181 CGPDHDPIFVVEVSICGFASEIGRGSSKRQAERDAAERILRREGIW 226


>gi|224582877|ref|YP_002636675.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224467404|gb|ACN45234.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 245

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 20  MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 77  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 136

Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  HD  FT+  ++SGL  P  G   S+R AEQ AA +VLK+ 
Sbjct: 197 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQVLKKL 242


>gi|16803845|ref|NP_465330.1| ribonuclease III [Listeria monocytogenes EGD-e]
 gi|224501394|ref|ZP_03669701.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
 gi|22654060|sp|Q8Y691|RNC_LISMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|16411259|emb|CAC99883.1| rncS [Listeria monocytogenes EGD-e]
          Length = 229

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  ++  L++ +G+ F N  LL++A THSS  + ++    +  ERLEFLGD +L L +S
Sbjct: 1   MN--QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LFN +    EG ++    ++V   +  + A  +  + ++R+     K       ++ A
Sbjct: 59  DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           DV ES I ALYLD GI+   TF+++    +          D KT+LQE       V  EY
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +   +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINKL 226


>gi|168184661|ref|ZP_02619325.1| ribonuclease III [Clostridium botulinum Bf]
 gi|237795890|ref|YP_002863442.1| ribonuclease III [Clostridium botulinum Ba4 str. 657]
 gi|182672267|gb|EDT84228.1| ribonuclease III [Clostridium botulinum Bf]
 gi|229262399|gb|ACQ53432.1| ribonuclease III [Clostridium botulinum Ba4 str. 657]
          Length = 234

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 1   MSALR--YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLIS 56
           M   +     L+ ++   F N  LL+ ALTHSS ++     + YERLEFLGD +L L+IS
Sbjct: 1   MKNRQDVLKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIIS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  ++  KEGEL+ +   +V   +  ++A+  DL  ++++S            SI A
Sbjct: 61  EHLYQKYEDKKEGELTRKRAIIVCENSLYEIAKRWDLGLYLQMSKGEELTGGRERVSILA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPE 174
           D VES+IAA+YLD G++ A  FV K +K+        +   D KT LQE       +T  
Sbjct: 121 DCVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTIN 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           Y++  + GP H  RF   V I       G+  SK+ AEQ AA E LK  G
Sbjct: 181 YELLKQEGPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230


>gi|329116187|ref|ZP_08244904.1| ribonuclease III [Streptococcus parauberis NCFD 2020]
 gi|326906592|gb|EGE53506.1| ribonuclease III [Streptococcus parauberis NCFD 2020]
          Length = 230

 Score =  152 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 115/229 (50%), Gaps = 6/229 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L    L+      FA+R+LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MKKLEV-LLKDSFDITFADRNLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  + +  EG++S + + +V  E+ +  +R     ++I++     K       +I  
Sbjct: 60  EYLFEKYPNKAEGDMSKQRSMIVREESLAGFSRFCTFDNYIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD G+E    F+ +    +  K + +   D KT LQE   ++  +  +Y
Sbjct: 120 DLFEAFLGALLLDKGVEKVRKFLYQVMIPQVEKGTFEQVMDYKTNLQELLQSQGDIIIDY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +V    GP HD  F V V  +    +QG   SK+ AEQ AA   L++  
Sbjct: 180 QVISEEGPAHDKVFEVAVLSNEKTLSQGKGKSKKLAEQAAAKNALEQLK 228


>gi|25010800|ref|NP_735195.1| ribonuclease III [Streptococcus agalactiae NEM316]
 gi|76788414|ref|YP_329471.1| ribonuclease III [Streptococcus agalactiae A909]
 gi|76798198|ref|ZP_00780449.1| ribonuclease III [Streptococcus agalactiae 18RS21]
 gi|77406421|ref|ZP_00783480.1| ribonuclease III [Streptococcus agalactiae H36B]
 gi|77408361|ref|ZP_00785102.1| ribonuclease III [Streptococcus agalactiae COH1]
 gi|77410795|ref|ZP_00787153.1| ribonuclease III [Streptococcus agalactiae CJB111]
 gi|77413080|ref|ZP_00789281.1| ribonuclease III [Streptococcus agalactiae 515]
 gi|81457210|sp|Q8E680|RNC_STRA3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101649|sp|Q3K1Y2|RNC_STRA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101650|sp|Q8E0K7|RNC_STRA5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|23095154|emb|CAD46389.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563471|gb|ABA46055.1| ribonuclease III [Streptococcus agalactiae A909]
 gi|76586461|gb|EAO62968.1| ribonuclease III [Streptococcus agalactiae 18RS21]
 gi|77160873|gb|EAO71983.1| ribonuclease III [Streptococcus agalactiae 515]
 gi|77163174|gb|EAO74127.1| ribonuclease III [Streptococcus agalactiae CJB111]
 gi|77173042|gb|EAO76170.1| ribonuclease III [Streptococcus agalactiae COH1]
 gi|77174985|gb|EAO77795.1| ribonuclease III [Streptococcus agalactiae H36B]
          Length = 228

 Score =  152 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 83/228 (36%), Positives = 118/228 (51%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  LR S LEK  G  FAN+ LL+ A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELR-SKLEKDYGIVFANQELLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R      +I++     K       +I  
Sbjct: 60  QYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD G+EV   FV+K       K + +  +D KT LQE   +   V  +Y
Sbjct: 120 DLFEAFLGALLLDKGVEVVHAFVNKVMIPHVEKGTYERVKDYKTSLQELLQSHGDVKIDY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +VT  SGP H   F V V ++    +QG+  SK+AAEQ AA   L   
Sbjct: 180 QVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNALATL 227


>gi|322391777|ref|ZP_08065242.1| ribonuclease III [Streptococcus peroris ATCC 700780]
 gi|321145257|gb|EFX40653.1| ribonuclease III [Streptococcus peroris ATCC 700780]
          Length = 232

 Score =  152 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+ R    FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNRFAIEFADQNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDEFIKLGKGEEKSGGRHRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+      +      +   D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVATVKNFIYTVMIPKVETGDFEMITDYKTHLQELLQVNGDVDICY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +VT  +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 180 QVTSETGPAHDKIFEVEVLVEGTSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|111073612|emb|CAL29457.1| Ribonuclease III [Wolbachia endosymbiont of Onchocerca volvulus]
          Length = 243

 Score =  152 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 82/228 (35%), Positives = 122/228 (53%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L   T+ + I Y F N S+L++ALTH S++        E+YERLEFLGD IL +++S
Sbjct: 9   MQNLN-DTISEIINYRFKNYSILKEALTHPSLNKRNSKNQIENYERLEFLGDSILNMVVS 67

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
           T+LF  F   KEG L+ R   LV   T + VA+ + L  FI + +  R +   +      
Sbjct: 68  TILFKLFPKEKEGRLAKRKTDLVCGSTIANVAKVIKLGDFIIMDNSERCNGGKYNLKNLE 127

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + +E+LI A+Y+DGG      FV +YW++ A       +D KT LQEW        P+Y+
Sbjct: 128 NALEALIGAIYIDGGFRNVERFVTQYWEKLAKYMLNPPQDPKTSLQEWTQKNKLPLPKYE 187

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  ++GP H+P FT+ V I           SK+ AEQ AA  ++ +  
Sbjct: 188 LKKQTGPAHNPEFTISVYIKNYGRVSACASSKKVAEQKAAELMIGKIN 235


>gi|332523874|ref|ZP_08400126.1| ribonuclease III [Streptococcus porcinus str. Jelinkova 176]
 gi|332315138|gb|EGJ28123.1| ribonuclease III [Streptococcus porcinus str. Jelinkova 176]
          Length = 230

 Score =  152 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L++     F ++ LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MKKLK-ALLKETFNIVFNDQDLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R     ++I++     K       +I  
Sbjct: 60  EYLFKKYPHKPEGDLSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD GIE            Q    + +  +D KT LQE   AK  V  +Y
Sbjct: 120 DLFEAFLGALLLDKGIEEVRLFLNQVMISQVEKGNFEKVKDYKTGLQEVLQAKGDVQIDY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +V   SGP H  +F V + ++    ++G+  SK+ AEQ AA + L+  
Sbjct: 180 QVVKESGPAHAKQFEVAILVNQEVISRGIGKSKKIAEQNAAKKALEHL 227


>gi|305674324|ref|YP_003865996.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23]
 gi|305412568|gb|ADM37687.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 249

 Score =  152 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 108/224 (48%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  LF
Sbjct: 19  QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLF 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG+L+    ++V   +   +A EL     + +             ++ ADV E
Sbjct: 79  AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G+E   +F+  Y   +          D K++LQE+       + EYK+T 
Sbjct: 139 AFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQLQEYVQRDGKGSLEYKITN 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H+  F  +V + G     G   SK+ AEQ AA E L + 
Sbjct: 199 EKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAKL 242


>gi|238897755|ref|YP_002923434.1| RNase III, ds RNA [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259491902|sp|C4K3Z3|RNC_HAMD5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|229465512|gb|ACQ67286.1| RNase III, ds RNA [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 226

 Score =  152 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+++  ++LE ++ Y+F  RSLL +ALTH S+   + +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNSININSLELKLRYSFKERSLLLQALTHRSL---HTQHNERLEFLGDSILSFVIANQLY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG +S    +LV  +T +++ARE D+ +++++     K   +   SI AD +E
Sbjct: 58  HRFPEINEGNMSRMRATLVRGDTLTEIAREFDIGAYLQLGQGELKTGGAQRESILADSIE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++LD  I+     + +++ +R   +     ++D KT LQE+  +     P Y + 
Sbjct: 118 AIIGAIFLDSDIQTVEKTILRWYHKRLEQINPTHHQKDPKTRLQEYMQSHQLPLPFYLLA 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  HD  FT+  ++SG      G   ++R AEQ AA + LK+ 
Sbjct: 178 QVCGEAHDQEFTIHCQVSGLEELVVGKGSNRRKAEQEAAEKTLKKL 223


>gi|242309254|ref|ZP_04808409.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
 gi|239524295|gb|EEQ64161.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
          Length = 224

 Score =  152 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + ++  ++ +GY F N++LL++ALTH S   S     ERLEFLGD +L L+I   L+  F
Sbjct: 1   MDFNHFQQTLGYHFKNQNLLKEALTHKSAKKST--HNERLEFLGDAVLDLIIGEFLYKKF 58

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S+ EGELS    S+V+ +  +++AR L +  ++ +S    ++      SI ++  E++I
Sbjct: 59  PSSPEGELSKMRASMVNEKAFAKIARYLGIGEYLFISHSEEQNHGRDKDSILSNAFEAII 118

Query: 124 AALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YL+ G+E                +       D KT LQE   A FGV PEY V    
Sbjct: 119 GAIYLESGLEKVQKIVLKILEILYPKIDIQHLFYDHKTSLQELTQALFGVIPEYVVLDSK 178

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GPDH+  F + V I G   A     SK+ A+Q  A   L+   
Sbjct: 179 GPDHNKEFLIGVFIQGKEYAHASGKSKKEAQQNCAKIALEILK 221


>gi|291563451|emb|CBL42267.1| RNAse III [butyrate-producing bacterium SS3/4]
          Length = 226

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 114/219 (52%), Gaps = 5/219 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIST 57
              +   L++ IGY F +  LL  ALTHSS ++          ERLEFLGD +L ++ S 
Sbjct: 1   MKEKLEKLQEMIGYQFKDPGLLTHALTHSSYANEKHWDKTRCNERLEFLGDAVLEVISSD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF+ ++S  EGE++    SLV   T +  A  + L  ++ +             S+ +D
Sbjct: 61  FLFHTYESMPEGEMTKLRASLVCEPTLAYCADVIPLGDYLLLGKGEDLTGGRKRPSVVSD 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E++I A+YLDGG+  A  F+ ++         +   D+KT LQE   AK+  T  Y++
Sbjct: 121 AMEAVIGAIYLDGGLANAKEFIHRFILNDIEHK-QLFYDSKTILQEMVQAKYKETLVYEL 179

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
               GPDH+  F V V+I      +G+  +K+AAEQVAA
Sbjct: 180 LKEEGPDHNKSFEVCVKIGDEEIGRGLGRTKKAAEQVAA 218


>gi|148380412|ref|YP_001254953.1| ribonuclease III [Clostridium botulinum A str. ATCC 3502]
 gi|148289896|emb|CAL84004.1| putative ribonuclease III [Clostridium botulinum A str. ATCC 3502]
          Length = 237

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 117/223 (52%), Gaps = 4/223 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63
              L+ ++   F N  LL+ ALTHSS ++     + YERLEFLGD +L L+IS  L+  +
Sbjct: 11  LKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKY 70

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           +  KEGEL+ +   +V   +  ++A+  DL  ++++S            SI AD VES+I
Sbjct: 71  EDKKEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESII 130

Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A  FV K +K+        +   D KT LQE       +T  Y++  + 
Sbjct: 131 AAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTINYELLKQE 190

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H  RF   V I       G+  SK+ AEQ AA E LK  G
Sbjct: 191 GPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 233


>gi|307276679|ref|ZP_07557797.1| ribonuclease III [Enterococcus faecalis TX2134]
 gi|306506789|gb|EFM75941.1| ribonuclease III [Enterococcus faecalis TX2134]
          Length = 243

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 110/228 (48%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M     + L++R G  F + +LLE+A THSS  + ++       ERLEFLGD +L L++S
Sbjct: 14  MDNQLTTELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVS 73

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  F    EG+L+    ++V  ++ ++ A+E    ++I +             S+  
Sbjct: 74  QYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLC 133

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD  +  A  F++     +          D KT+LQE    K  V+ EY
Sbjct: 134 DLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHELDHKTQLQEVLQRKGDVSIEY 193

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++    GP HD  F   V ++G     G   SK+ AEQ AA   LK  
Sbjct: 194 RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSI 241


>gi|302036171|ref|YP_003796493.1| ribonuclease III [Candidatus Nitrospira defluvii]
 gi|300604235|emb|CBK40567.1| Ribonuclease III [Candidatus Nitrospira defluvii]
          Length = 234

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 119/227 (52%), Gaps = 9/227 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
              +++ +GY F    LLE+ALTH S S+  +       ERLEFLGD +L L++S  L  
Sbjct: 7   IEAVQRLLGYRFHQPRLLEEALTHKSYSNERRSRDRTQNERLEFLGDAVLSLVMSEYLAA 66

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  + EG LS     LVS  + ++ AR + L   +R+             S+ AD +E+
Sbjct: 67  EFPGSNEGGLSKLKAHLVSEASLAKAARRMKLGRLLRLGKGEELSKGREKHSLLADALEA 126

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ-----RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           LIAA+YLDGG+E +  F  +  ++     RA ++     D KT+LQE    ++   P+Y+
Sbjct: 127 LIAAIYLDGGLEASRKFTLQVLEEELLATRAEQARPGMEDYKTQLQEVCQKRYESLPQYE 186

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               SGPDH+  F V + I G+    G   SK+ AEQ+AA E L + 
Sbjct: 187 TVRESGPDHEKVFEVELTIQGVMRGIGRGRSKKEAEQMAAKEALTQL 233


>gi|168333987|ref|ZP_02692211.1| Ribonuclease III [Epulopiscium sp. 'N.t. morphotype B']
          Length = 239

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 111/221 (50%), Gaps = 6/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
             + EK+I Y F    LL+ ALTHSS ++ ++E      ERLEFLGD IL L++S  LF 
Sbjct: 11  LESFEKKIEYTFKRIELLDLALTHSSYANEHREQGVKDNERLEFLGDAILDLIVSEYLFK 70

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  ++EG+LS    S+V   + ++  + L+L  +I +             SI AD  E+
Sbjct: 71  KYPESQEGDLSKFRASIVCEASLAKAGKRLELGKYILLGHGEEMGGGRDRESIIADAFEA 130

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +  A+ +D   E   T++ K   +    +   K  +D KT LQ  +         Y+V  
Sbjct: 131 VTGAMLIDSSYEDVKTYLAKTLIEFIKHTSATKLYKDYKTILQIESQKNVNTVIAYEVVE 190

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             GPDH+  F V ++ +G    +G   +KR AEQVAA + L
Sbjct: 191 EKGPDHEKEFVVELKQNGKVIGKGSGRTKRDAEQVAAHQAL 231


>gi|289435148|ref|YP_003465020.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171392|emb|CBH27936.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|313632767|gb|EFR99733.1| ribonuclease III [Listeria seeligeri FSL N1-067]
 gi|313637349|gb|EFS02832.1| ribonuclease III [Listeria seeligeri FSL S4-171]
          Length = 230

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 113/228 (49%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S
Sbjct: 1   MN--KWEELQESVGFDFQDIELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LFN +    EG ++    ++V   +  + A  +  + ++R+     K       ++ A
Sbjct: 59  NYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKGEEKAGGRTRPALLA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           DV ES I ALYLD G+E    F+++    +          D KT+LQE       V  EY
Sbjct: 119 DVFESFIGALYLDNGLEKVVKFLERVIFPKIDAGAYLETVDYKTQLQEIVQRDRDVLIEY 178

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +   +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226


>gi|239624036|ref|ZP_04667067.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522067|gb|EEQ61933.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 235

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+      LE+RI Y F ++SL  +ALTHSS ++ ++       ERLEFLGD +L ++ S
Sbjct: 1   MNG-HLKELEERIDYQFKDQSLFSQALTHSSYANEHRLDHSRCNERLEFLGDAVLEIVTS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L++ + +  EG+L+    S+V   T +  A ++ L  ++ +             S+ +
Sbjct: 60  DFLYHKYATLPEGDLTKIRASIVCEPTLAYCAGDIRLGEYLFLGKGEDATGGRGRNSVVS 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LI A+YLDGG   A  F+ ++         +   D+KT LQE   ++      Y+
Sbjct: 120 DAMEALIGAIYLDGGFANAKEFIHRFILNDIEHK-QLFYDSKTILQEMVQSRQAEALSYE 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GPDH+  F V  +I      +GM  +K+AAEQVAA   + + 
Sbjct: 179 ILREEGPDHNKSFEVCAKIGDAEIGRGMGRTKKAAEQVAAYNGILKL 225


>gi|22536887|ref|NP_687738.1| ribonuclease III [Streptococcus agalactiae 2603V/R]
 gi|22533737|gb|AAM99610.1|AE014224_13 ribonuclease III [Streptococcus agalactiae 2603V/R]
 gi|319744744|gb|EFV97086.1| ribonuclease III [Streptococcus agalactiae ATCC 13813]
          Length = 236

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 83/228 (36%), Positives = 118/228 (51%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  LR S LEK  G  FAN+ LL+ A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 9   MKELR-SKLEKDYGIVFANQELLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 67

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R      +I++     K       +I  
Sbjct: 68  QYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTILG 127

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD G+EV   FV+K       K + +  +D KT LQE   +   V  +Y
Sbjct: 128 DLFEAFLGALLLDKGVEVVHAFVNKVMIPHVEKGTYERVKDYKTSLQELLQSHGDVKIDY 187

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +VT  SGP H   F V V ++    +QG+  SK+AAEQ AA   L   
Sbjct: 188 QVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNALATL 235


>gi|15616869|ref|NP_240082.1| ribonuclease III [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219681624|ref|YP_002468010.1| ribonuclease III [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|219682181|ref|YP_002468565.1| ribonuclease III [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|257471312|ref|ZP_05635311.1| ribonuclease III [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|11134313|sp|P57346|RNC_BUCAI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807240|sp|B8D951|RNC_BUCA5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807241|sp|B8D7F5|RNC_BUCAT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|25289216|pir||H84959 ribonuclease III (EC 3.1.26.3) [imported] - Buchnera sp.  (strain
           APS)
 gi|10038933|dbj|BAB12968.1| ribonuclease III [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219621914|gb|ACL30070.1| ribonuclease III [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219624467|gb|ACL30622.1| ribonuclease III [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|311085996|gb|ADP66078.1| ribonuclease III [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086571|gb|ADP66652.1| ribonuclease III [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
 gi|311087152|gb|ADP67232.1| ribonuclease III [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
 gi|311087686|gb|ADP67765.1| ribonuclease III [Buchnera aphidicola str. JF98 (Acyrthosiphon
           pisum)]
          Length = 226

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +    ++K +GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNHIVTKKIQKVLGYTFTHKDLLKQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            HF    EG++S    +LV   T +++A E DL  ++++     K       SI A+ VE
Sbjct: 58  QHFPYIDEGDMSRMRATLVRGNTLAEIAYEFDLGEYLKLGQGELKSGGFRRESILANTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI ++YLD  I+     + K++++R   +  G  ++D KT LQE+  +K    P Y + 
Sbjct: 118 ALIGSIYLDSNIKTVEELILKWYEKRLEKISPGDTQKDPKTRLQEYLQSKHLSLPLYFIV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  FT+  +IS +     G   S+R AEQ AA + L + G+
Sbjct: 178 EVYGEAHNQLFTIHCKISTISEYLIGTGSSRRKAEQDAAQKALIKLGV 225


>gi|331266250|ref|YP_004325880.1| ribonuclease III [Streptococcus oralis Uo5]
 gi|326682922|emb|CBZ00539.1| ribonuclease III [Streptococcus oralis Uo5]
          Length = 232

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+KR    FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +  +D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +VT  +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 180 QVTSETGPAHDKVFDVEVLVEGRSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|313888515|ref|ZP_07822182.1| ribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845544|gb|EFR32938.1| ribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 231

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 111/227 (48%), Gaps = 5/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+      LE+++ Y F ++ LLE ALTHSS  +  +    ES ERLEFLGD +LGL+I 
Sbjct: 1   MTFSNLKNLERKLNYDFKDKGLLETALTHSSYVNENKMKQYESNERLEFLGDAVLGLVIG 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
              + +F    EG L+      V+ +    +A+ L+L  FIR     +K+  S   S  A
Sbjct: 61  EYFYKNFPKDLEGSLTKMRAESVNEKVLFFIAKGLELGDFIRFGKGEKKNGGSKRESTSA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           D +E+LI A++LD     A   V   + +     + K        + +    + G   EY
Sbjct: 121 DALEALIGAIFLDSNFNNAKKIVLNLFDEFLKEDAYKLFNVDFKTMLQEEVQRSGQKAEY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           K+    GPD+D  F   + +  +   +G   +K+ ++Q AA E L+R
Sbjct: 181 KLVREEGPDNDKTFFTELYLDEVLAGKGSGKTKKESQQEAAREALER 227


>gi|134299915|ref|YP_001113411.1| ribonuclease III [Desulfotomaculum reducens MI-1]
 gi|189043307|sp|A4J683|RNC_DESRM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|134052615|gb|ABO50586.1| RNAse III [Desulfotomaculum reducens MI-1]
          Length = 246

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 82/231 (35%), Positives = 113/231 (48%), Gaps = 8/231 (3%)

Query: 1   MSALR--YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLL 54
           MS      + L+ R+G+ + N +LL +ALTHSS  H  +       +RLEFLGD +L L+
Sbjct: 1   MSKQDEQANRLKTRLGFKWHNPTLLIQALTHSSCVHENRGHGLCHNQRLEFLGDAVLELI 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           IS  L+  F    EGEL+    S V   + ++VAR LDL   +R+     +       SI
Sbjct: 61  ISEHLYKMFPDRTEGELTKMRASSVCEPSLAKVARGLDLGRCLRMGRGEERSGGRERPSI 120

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVT 172
            AD  E+L+ A+YLD G+E++  FV              +  RD KTELQE         
Sbjct: 121 LADAFEALLGAIYLDQGLEISRHFVLNCLSSIIDDVVAGRLDRDYKTELQEILQQSSPDP 180

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             Y +   SGPDHD  FT  V   G    +G   SK+ AEQ AA +  +  
Sbjct: 181 LTYTIMDESGPDHDKTFTAGVIYKGKVIGKGSGHSKKEAEQQAAKDAFQHL 231


>gi|313906054|ref|ZP_07839406.1| ribonuclease III [Eubacterium cellulosolvens 6]
 gi|313469099|gb|EFR64449.1| ribonuclease III [Eubacterium cellulosolvens 6]
          Length = 228

 Score =  152 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 7/224 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLIS 56
           M  LR   LE++ G+ F + S L+ A++HSS ++     ++   ERLEFLGD +L L+ S
Sbjct: 1   MKKLR--ELEQKTGHVFNDISWLKLAMSHSSYANEQHLGHRGCNERLEFLGDAVLELVSS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L++ +    EG+L+    SLV   T +  AR + L  ++ +             S+ +
Sbjct: 59  EYLYDTYPEMPEGKLTRLRASLVCEPTLAYDARCIGLPEYLLLGKGEDATGGRKRDSVVS 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+ I A++ DGG E A  F+ +Y          F  D+KT LQE   +       Y+
Sbjct: 119 DALEATIGAIFKDGGFEEAKKFILRYIMNDVENKQLFH-DSKTRLQEMIQSVTDEELSYQ 177

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +   SGPDH+  F   V +      +G   SK+AAEQ AA + +
Sbjct: 178 IVAESGPDHEKVFEAEVRLGDKLLGRGTGHSKKAAEQQAAYKAI 221


>gi|227517298|ref|ZP_03947347.1| ribonuclease III [Enterococcus faecalis TX0104]
 gi|227554519|ref|ZP_03984566.1| ribonuclease III [Enterococcus faecalis HH22]
 gi|229547475|ref|ZP_04436200.1| ribonuclease III [Enterococcus faecalis TX1322]
 gi|229548050|ref|ZP_04436775.1| ribonuclease III [Enterococcus faecalis ATCC 29200]
 gi|256854772|ref|ZP_05560136.1| ribonuclease III [Enterococcus faecalis T8]
 gi|293385103|ref|ZP_06630929.1| ribonuclease III [Enterococcus faecalis R712]
 gi|293389076|ref|ZP_06633548.1| ribonuclease III [Enterococcus faecalis S613]
 gi|307270584|ref|ZP_07551882.1| ribonuclease III [Enterococcus faecalis TX4248]
 gi|307273593|ref|ZP_07554821.1| ribonuclease III [Enterococcus faecalis TX0855]
 gi|307284870|ref|ZP_07565026.1| ribonuclease III [Enterococcus faecalis TX0860]
 gi|307288870|ref|ZP_07568843.1| ribonuclease III [Enterococcus faecalis TX0109]
 gi|307292116|ref|ZP_07571982.1| ribonuclease III [Enterococcus faecalis TX0411]
 gi|312902145|ref|ZP_07761405.1| ribonuclease III [Enterococcus faecalis TX0470]
 gi|312905399|ref|ZP_07764513.1| ribonuclease III [Enterococcus faecalis TX0635]
 gi|312906714|ref|ZP_07765714.1| ribonuclease III [Enterococcus faecalis DAPTO 512]
 gi|312910825|ref|ZP_07769661.1| ribonuclease III [Enterococcus faecalis DAPTO 516]
 gi|312953196|ref|ZP_07772042.1| ribonuclease III [Enterococcus faecalis TX0102]
 gi|227075305|gb|EEI13268.1| ribonuclease III [Enterococcus faecalis TX0104]
 gi|227176317|gb|EEI57289.1| ribonuclease III [Enterococcus faecalis HH22]
 gi|229306839|gb|EEN72835.1| ribonuclease III [Enterococcus faecalis ATCC 29200]
 gi|229307399|gb|EEN73386.1| ribonuclease III [Enterococcus faecalis TX1322]
 gi|256710332|gb|EEU25376.1| ribonuclease III [Enterococcus faecalis T8]
 gi|291077580|gb|EFE14944.1| ribonuclease III [Enterococcus faecalis R712]
 gi|291081544|gb|EFE18507.1| ribonuclease III [Enterococcus faecalis S613]
 gi|306496769|gb|EFM66320.1| ribonuclease III [Enterococcus faecalis TX0411]
 gi|306500142|gb|EFM69486.1| ribonuclease III [Enterococcus faecalis TX0109]
 gi|306503129|gb|EFM72386.1| ribonuclease III [Enterococcus faecalis TX0860]
 gi|306509606|gb|EFM78648.1| ribonuclease III [Enterococcus faecalis TX0855]
 gi|306513165|gb|EFM81799.1| ribonuclease III [Enterococcus faecalis TX4248]
 gi|310627362|gb|EFQ10645.1| ribonuclease III [Enterococcus faecalis DAPTO 512]
 gi|310628813|gb|EFQ12096.1| ribonuclease III [Enterococcus faecalis TX0102]
 gi|310631128|gb|EFQ14411.1| ribonuclease III [Enterococcus faecalis TX0635]
 gi|311288848|gb|EFQ67404.1| ribonuclease III [Enterococcus faecalis DAPTO 516]
 gi|311290809|gb|EFQ69365.1| ribonuclease III [Enterococcus faecalis TX0470]
 gi|315026454|gb|EFT38386.1| ribonuclease III [Enterococcus faecalis TX2137]
 gi|315028377|gb|EFT40309.1| ribonuclease III [Enterococcus faecalis TX4000]
 gi|315031785|gb|EFT43717.1| ribonuclease III [Enterococcus faecalis TX0017]
 gi|315034802|gb|EFT46734.1| ribonuclease III [Enterococcus faecalis TX0027]
 gi|315145468|gb|EFT89484.1| ribonuclease III [Enterococcus faecalis TX2141]
 gi|315146605|gb|EFT90621.1| ribonuclease III [Enterococcus faecalis TX4244]
 gi|315151034|gb|EFT95050.1| ribonuclease III [Enterococcus faecalis TX0012]
 gi|315152764|gb|EFT96780.1| ribonuclease III [Enterococcus faecalis TX0031]
 gi|315154690|gb|EFT98706.1| ribonuclease III [Enterococcus faecalis TX0043]
 gi|315159400|gb|EFU03417.1| ribonuclease III [Enterococcus faecalis TX0312]
 gi|315161159|gb|EFU05176.1| ribonuclease III [Enterococcus faecalis TX0645]
 gi|315164397|gb|EFU08414.1| ribonuclease III [Enterococcus faecalis TX1302]
 gi|315167205|gb|EFU11222.1| ribonuclease III [Enterococcus faecalis TX1341]
 gi|315171217|gb|EFU15234.1| ribonuclease III [Enterococcus faecalis TX1342]
 gi|315172944|gb|EFU16961.1| ribonuclease III [Enterococcus faecalis TX1346]
 gi|315573246|gb|EFU85437.1| ribonuclease III [Enterococcus faecalis TX0309B]
 gi|315577147|gb|EFU89338.1| ribonuclease III [Enterococcus faecalis TX0630]
 gi|315581180|gb|EFU93371.1| ribonuclease III [Enterococcus faecalis TX0309A]
 gi|323479029|gb|ADX78468.1| ribonuclease III [Enterococcus faecalis 62]
 gi|327536218|gb|AEA95052.1| ribonuclease III [Enterococcus faecalis OG1RF]
 gi|329575676|gb|EGG57203.1| ribonuclease III [Enterococcus faecalis TX1467]
          Length = 243

 Score =  152 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 110/228 (48%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M     + L++R G  F + +LLE+A THSS  + ++       ERLEFLGD +L L++S
Sbjct: 14  MDNQLTTELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVS 73

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  F    EG+L+    ++V  ++ ++ A+E    ++I +             S+  
Sbjct: 74  QYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLC 133

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD  +  A  F++     +          D KT+LQE    K  V+ EY
Sbjct: 134 DLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHEMDHKTQLQEVLQRKGDVSIEY 193

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++    GP HD  F   V ++G     G   SK+ AEQ AA   LK  
Sbjct: 194 RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSI 241


>gi|293391848|ref|ZP_06636182.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952382|gb|EFE02501.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 226

 Score =  152 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M   +   L+++I Y F N  LL++ALTH S  H   +  ERLEFLGD IL L I   LF
Sbjct: 1   MKENQLERLQRQINYRFQNIELLKQALTHRSAGH---QHNERLEFLGDAILNLTIGEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+  L  +I +     K       SI AD VE
Sbjct: 58  HQFPKCNEGELSRMRATLVREPTLALLARDFKLGDYILLGQGELKSGGFRRESILADCVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD  +  A   V ++++   + +K G  ++DAKT LQE+        P Y + 
Sbjct: 118 AIIGAISLDSNLTNATQIVCQWYQNLLKEIKPGDNQKDAKTRLQEYLQGNRLPLPTYNIV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  F V   I        G   S+R AEQ AA ++L+   I
Sbjct: 178 NIQGEAHNQLFIVECSIQNSDRTFIGKGSSRRKAEQAAAEQILQELNI 225


>gi|291278588|ref|YP_003495423.1| ribonuclease III [Deferribacter desulfuricans SSM1]
 gi|290753290|dbj|BAI79667.1| ribonuclease III [Deferribacter desulfuricans SSM1]
          Length = 231

 Score =  152 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 82/220 (37%), Positives = 119/220 (54%), Gaps = 4/220 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
               LE+ IGY F N+SLL +ALTHSS ++  +   +YERLEFLGD +L L+++  L   
Sbjct: 3   NIEELEELIGYRFKNKSLLLEALTHSSYAYEKKLKRNYERLEFLGDSVLQLIVTEYLVIK 62

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +   KEG LS   +  VS +  S++A ++ L  F+ +             SI AD+ ESL
Sbjct: 63  YKEFKEGVLSKYRSFFVSEDIISEIALKIRLNDFLMLGKGEIVSGGYTKPSILADIFESL 122

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YLDGG   A   V     +   +  +     D KTELQ+    KFG  PEYKV   
Sbjct: 123 LGAVYLDGGYNEARRIVLMLMSELMDEYIEKGIIIDPKTELQKITQQKFGYIPEYKVLKE 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GP+HD  FTV ++++      G+  +K+ AE  AA++ L
Sbjct: 183 EGPEHDKVFTVELKLADGNKFIGVGRNKKKAEIDAASKAL 222


>gi|332799147|ref|YP_004460646.1| Ribonuclease 3 [Tepidanaerobacter sp. Re1]
 gi|332696882|gb|AEE91339.1| Ribonuclease 3 [Tepidanaerobacter sp. Re1]
          Length = 238

 Score =  152 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 111/226 (49%), Gaps = 6/226 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLF 60
           +   L++ IG  F N + L +A  H S+++     YQE+ +RLEFLGD +L L IS  L+
Sbjct: 10  QLMILQENIGIQFNNLNTLNQAFIHPSLTNEKEKPYQENNQRLEFLGDAVLELAISEYLY 69

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            H+D   EG+++      V   + +Q+AR+L L  ++ +S            SI AD +E
Sbjct: 70  RHYDFLTEGQMTKIRAFTVCESSLAQIARQLFLGDYLILSKGEENTGGREKVSILADTLE 129

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+Y+D   +    F+ K  +        G++  D KT+LQE           Y V 
Sbjct: 130 ALIGAIYIDKNYKTTYDFIIKNLEAIIFKAIQGEWGTDYKTDLQELLQKFDEDKILYNVV 189

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             SGPDHD  F V V         G+  SK+ AEQ AA E L R  
Sbjct: 190 NESGPDHDKLFCVEVVWKNKILGTGIGKSKKQAEQNAAKEALDRMN 235


>gi|170761820|ref|YP_001787766.1| ribonuclease III [Clostridium botulinum A3 str. Loch Maree]
 gi|169408809|gb|ACA57220.1| ribonuclease III [Clostridium botulinum A3 str. Loch Maree]
          Length = 234

 Score =  152 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 1   MSALR--YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLIS 56
           M   +     L+ ++   F N  LL+ ALTHSS ++     + YERLEFLGD +L L+IS
Sbjct: 1   MKNRQDVLKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIIS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  ++  KEGEL+ +   +V   +  ++A+  DL  ++++S            SI A
Sbjct: 61  EHLYQKYEDKKEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPE 174
           D VES+IAA+YLD G++ A  FV K +K+        +   D KT LQE       +T  
Sbjct: 121 DCVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTIN 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           Y++  + GP H  RF   V I       G+  SK+ AEQ AA E LK  G
Sbjct: 181 YELLKQEGPPHRRRFFTNVTIDNEIRGTGIGYSKKEAEQNAAREALKNLG 230


>gi|146296620|ref|YP_001180391.1| ribonuclease III [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410196|gb|ABP67200.1| RNAse III [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 224

 Score =  152 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 1/221 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +EK++GY F N +LL+ ALTH S +H  +  YERLEFLGD +L L++S  LF HF   
Sbjct: 2   TDIEKKLGYRFKNPNLLKLALTHKSATHDDKSCYERLEFLGDAVLELVVSKYLFEHFPQL 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V +ET S+VA  L+L  +I    + +K+      SI +DV+E++   +
Sbjct: 62  SEGELTNLRATIVCSETLSKVAETLNLKRYIVFGKNEKKEGFEGNKSIWSDVLEAIFGGI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDH 185
           +L+ G ++A   V    +    K+ + +     + +     +     + K        D+
Sbjct: 122 FLESGFDMAEKIVINLLEPFIKKAAEGKLFYDYKTKLQEFIQREKNVKIKYIDYENFEDN 181

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
             RF   + I     ++G   SK+ A+Q AA   LK+ G+ 
Sbjct: 182 LSRFKSELYIGKNKISEGYGNSKKEAQQEAALNALKKLGVI 222


>gi|237807623|ref|YP_002892063.1| ribonuclease III [Tolumonas auensis DSM 9187]
 gi|237499884|gb|ACQ92477.1| ribonuclease III [Tolumonas auensis DSM 9187]
          Length = 223

 Score =  152 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
              + S LE+++GY F N+ LL +A+TH S    +    ERLEFLGD IL L+I+ +L++
Sbjct: 1   MNDKLSRLEQKLGYPFQNKDLLVRAITHRSAGSRH---NERLEFLGDSILSLVIAEVLYH 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F +  EG++S    +LV  +T +++ARE  L  ++ +     K       SI AD VE+
Sbjct: 58  RFPNVSEGDMSRMRATLVREKTLAELAREFALGDYLILGPGELKSGGYRRESILADTVEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD  ++   T +  ++ +R         ++D KT LQE+   +    P Y VT 
Sbjct: 118 LIGAIYLDSDLDGIRTLMLNWYNERLDSIRPGVEQKDPKTRLQEFLQGRRRPLPTYAVTD 177

Query: 180 RSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223
             G  H+ +FTV   I  +  A  G+  S+R AEQ AA   L++ 
Sbjct: 178 VKGEAHNQQFTVECAIDDIEAAFVGVGSSRRKAEQAAAERALEQL 222


>gi|56417113|ref|YP_154187.1| ribonuclease III [Anaplasma marginale str. St. Maries]
 gi|81358903|sp|Q5P9U8|RNC_ANAMM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56388345|gb|AAV86932.1| ribonuclease III [Anaplasma marginale str. St. Maries]
          Length = 232

 Score =  152 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 117/228 (51%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRI----GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56
           M  +   +L  +I    GY F +  LL +ALTH  +S+    +YERLEFLGD +L + +S
Sbjct: 1   MHPVDKKSLALKIYEATGYQFRDLDLLLEALTHPRLSYKSAANYERLEFLGDAVLSMTVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +L+  F    EG L+ +  +LV      ++AR + L   I +S   R    S       
Sbjct: 61  EMLYRLFPDDDEGCLTRKRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLE 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           + +E+LI A+Y+DGG E   +F+ K+W  +    S    +D KT LQEW   +    P Y
Sbjct: 121 NALEALIGAMYMDGGPEAYRSFIHKHWLARAQHMSYTPPQDPKTALQEWVQGRGWAMPLY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K+  +SGP+H P F V V I       G   SK+ AEQ AA  +LK+ 
Sbjct: 181 KLVSKSGPEHKPVFAVEVSIQEHGNVLGTGSSKKLAEQEAAKLMLKKI 228


>gi|297588527|ref|ZP_06947170.1| ribonuclease III [Finegoldia magna ATCC 53516]
 gi|297573900|gb|EFH92621.1| ribonuclease III [Finegoldia magna ATCC 53516]
          Length = 238

 Score =  152 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 74/236 (31%), Positives = 112/236 (47%), Gaps = 10/236 (4%)

Query: 1   MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGL 53
           M      +   LE+++ Y F + +LL  A  HSS  +  +     S ERLEFLGD +L L
Sbjct: 1   MDKARIEKLHELEEKLDYRFTDINLLNLAFFHSSYGNENKSYKDISNERLEFLGDSVLDL 60

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           ++S  L+N   S KEG ++   + +V  ++ S +A+ L+L  ++ +         S   S
Sbjct: 61  IVSDFLYNSKSSLKEGAMTKIRSQMVCEKSFSNMAKYLELGKYLMMGHGEFISGGSEKPS 120

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFG 170
           + AD  E++  A+YLD G E A   V+  +K   +   +      D KT LQE       
Sbjct: 121 VLADTFEAVFGAIYLDSGYESAFKIVENKFKSLFIAEIETKSSFIDYKTMLQENNQKNSR 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
              +YK+    GPDHD +F V V    L    G   SK+ AEQ AA   L +  + 
Sbjct: 181 DKLKYKIVKEEGPDHDKKFYVDVYEGNLVIGSGFGSSKKHAEQDAARNALIKLRVI 236


>gi|291550077|emb|CBL26339.1| RNAse III [Ruminococcus torques L2-14]
          Length = 228

 Score =  152 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  ++   LE++IGY F ++SL+E+AL HSS ++       E  ERLEFLGD +L L+ S
Sbjct: 1   MDRVK--ELEQKIGYVFKDKSLIERALMHSSYTNEKHLKKYECNERLEFLGDAVLELVSS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LFN F    EGEL+    S+V   + +  AR++ L  ++ +             SI +
Sbjct: 59  AYLFNEFPKVSEGELTKTRASMVCEPSLAMCARDIGLGDYLLLGKGEEATGGRKRDSITS 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LI A+YLDGG          ++    L+  K   D+KT LQE   A       Y+
Sbjct: 119 DAMEALIGAIYLDGGF-TNAKEFIHHFILTDLEDKKLFYDSKTILQEIVQANMTGNVSYE 177

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GPDH+  F V   I   A  +G   SK++AEQ AA E +   
Sbjct: 178 LIDEQGPDHNKIFEVEARIGRKAWGRGKGSSKKSAEQQAAYEAILNL 224


>gi|153009954|ref|YP_001371169.1| ribonuclease III [Ochrobactrum anthropi ATCC 49188]
 gi|151561842|gb|ABS15340.1| Ribonuclease III [Ochrobactrum anthropi ATCC 49188]
          Length = 234

 Score =  152 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 115/228 (50%), Positives = 157/228 (68%), Gaps = 2/228 (0%)

Query: 1   MSALRYST--LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           M++   +   LE+R G+ F N   L++ALTHSS+    + +YERLEFLGDR+LGL ++ +
Sbjct: 1   MASANQAAAILEERTGHRFLNLKRLDRALTHSSVQAPSRANYERLEFLGDRVLGLTVAEM 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF+ F  A EGELSVR N+LV+AETC+ +A E+ LA+ I   SD++      + +++ADV
Sbjct: 61  LFDEFPDASEGELSVRLNALVNAETCAAIADEIGLANLIHTGSDIKSLNDKRLLNVRADV 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           VE+LIA +YLDGG+E    FV +YW++R+L++G  RRDAKTELQEWAH +  V P Y + 
Sbjct: 121 VEALIATIYLDGGLEAVRPFVKRYWEKRSLQTGAARRDAKTELQEWAHQQGNVHPSYAII 180

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            R+GPDHDP F V V + G A   G   SKR AEQ AA  +L REG+W
Sbjct: 181 SRTGPDHDPLFAVEVTVKGFATETGEGRSKRIAEQNAAEAMLYREGVW 228


>gi|261868615|ref|YP_003256537.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413947|gb|ACX83318.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 226

 Score =  152 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M   +   L+++I Y F N  LL++ALTH S  H   +  ERLEFLGD IL L I   LF
Sbjct: 1   MKENQLERLQRQINYRFQNIELLKQALTHRSAGH---QHNERLEFLGDAILNLTIGEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+  L  +I +     K       SI AD VE
Sbjct: 58  HQFPKCNEGELSRMRATLVREPTLALLARDFKLGDYILLGQGELKSGGFRRESILADCVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD  +  A   V ++++   + +K G  ++DAKT LQE+        P Y + 
Sbjct: 118 AIIGAISLDSSLTNATQIVCQWYQNLLKEIKPGDNQKDAKTRLQEYLQGNRLPLPTYNIV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  F V   I        G   S+R AEQ AA ++L+   I
Sbjct: 178 NIQGEAHNQLFIVECSIQNSDRTFIGKGSSRRKAEQAAAEQILQELNI 225


>gi|224500035|ref|ZP_03668384.1| ribonuclease III [Listeria monocytogenes Finland 1988]
 gi|254831594|ref|ZP_05236249.1| ribonuclease III [Listeria monocytogenes 10403S]
 gi|284802251|ref|YP_003414116.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
 gi|284995393|ref|YP_003417161.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
 gi|284057813|gb|ADB68754.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
 gi|284060860|gb|ADB71799.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
          Length = 229

 Score =  152 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  ++  L++ +G+ F N  LL++A THSS  + ++    +  ERLEFLGD +L L +S
Sbjct: 1   MN--QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LFN +    EG ++    ++V   +  + A  +  + ++R+     K       ++ A
Sbjct: 59  DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           DV ES I ALYLD GI+   TF+++    +          D KT+LQE       V  EY
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +   +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226


>gi|116873240|ref|YP_850021.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123466444|sp|A0AJR0|RNC_LISW6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116742118|emb|CAK21242.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 229

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S
Sbjct: 1   MN--QWEELQESVGFDFQDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LFN +    EG ++    ++V   +  + A  +  + +IR+     K       ++ A
Sbjct: 59  NYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAIHFSKYIRLGKGEEKAGGRTRPALLA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           DV ES I ALYLD GI+   TF+++    +          D KT+LQE       V  EY
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGEYLQTVDYKTQLQEIVQRDRDVLIEY 178

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +   +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226


>gi|313623280|gb|EFR93523.1| ribonuclease III [Listeria innocua FSL J1-023]
          Length = 229

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  ++  L++ +G+ F N  LL++A THSS  + ++    +  ERLEFLGD +L L +S
Sbjct: 1   MN--QWEELQESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LFN +    EG ++    ++V   +  + A  +  + ++R+     K       ++ A
Sbjct: 59  DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           DV ES I ALYLD GI+   TF+++    +          D KT+LQE       V  EY
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +   +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 179 DILGETGPAHNKSFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226


>gi|251772101|gb|EES52671.1| Ribonuclease III [Leptospirillum ferrodiazotrophum]
          Length = 254

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 7/226 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLL 59
               LE+R+GY F++   LE+A  H S ++  ++       ERLEFLGD +LGL+++  L
Sbjct: 10  NLPVLEERLGYRFSSLERLEEATIHKSFTNETKKGGVRRDNERLEFLGDTVLGLVVAEYL 69

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              +  + EG LS     +VS  + +Q+AR + L  ++ +             SI +D +
Sbjct: 70  MRLWPDSPEGVLSKLKGRIVSEPSLAQIARNIGLGRYLLIGRGEEMTQGREKNSILSDAL 129

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++IAA+Y DGG++ A  F+ + +++       G+   D KT+LQE+   +    P+Y +
Sbjct: 130 EAVIAAIYQDGGLDAARQFILREFRELFESVSRGESVADYKTQLQEYCQRELETLPQYVI 189

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           T +SGPDH   F V V I      +G   SK+ AEQ AA   L+R 
Sbjct: 190 TGQSGPDHQKVFEVAVRIRDKNWGEGQGHSKKEAEQKAAKSALERI 235


>gi|46908036|ref|YP_014425.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
 gi|47093844|ref|ZP_00231588.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
 gi|226224408|ref|YP_002758515.1| ribonuclease III [Listeria monocytogenes Clip81459]
 gi|254826153|ref|ZP_05231154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
 gi|254852713|ref|ZP_05242061.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
 gi|254933277|ref|ZP_05266636.1| ribonuclease III [Listeria monocytogenes HPB2262]
 gi|300763882|ref|ZP_07073879.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
 gi|73917580|sp|Q71YL2|RNC_LISMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|259491903|sp|C1KWA4|RNC_LISMC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|46881306|gb|AAT04602.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
 gi|47017785|gb|EAL08574.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
 gi|225876870|emb|CAS05579.1| Putative ribonuclease III [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258606034|gb|EEW18642.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
 gi|293584837|gb|EFF96869.1| ribonuclease III [Listeria monocytogenes HPB2262]
 gi|293595393|gb|EFG03154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
 gi|300515618|gb|EFK42668.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
 gi|328473534|gb|EGF44371.1| ribonuclease III [Listeria monocytogenes 220]
 gi|332312246|gb|EGJ25341.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
          Length = 229

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S
Sbjct: 1   MN--QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LFN +    EG ++    ++V   +  + A  +  + ++R+     K       ++ A
Sbjct: 59  NYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           DV ES I ALYLD GI+   TF+++    +          D KT+LQE       V  EY
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +   +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226


>gi|332289238|ref|YP_004420090.1| ribonuclease III [Gallibacterium anatis UMN179]
 gi|330432134|gb|AEC17193.1| ribonuclease III [Gallibacterium anatis UMN179]
          Length = 226

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 117/228 (51%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      L+ ++ Y F   +LL++ALTH S +  +    ERLEFLGD IL   I   L+
Sbjct: 1   MNNQHLDRLQNKLSYQFKKMALLQQALTHRSAASEH---NERLEFLGDSILNFTIGEALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F  + EG+LS    +LV  +T +Q+A E DL  ++++     K      +SI +D VE
Sbjct: 58  HQFPKSAEGDLSRMRATLVREQTLAQIAIEFDLGEYLKLGPGELKSGGYRRSSILSDCVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD   E     +  +++QR   +K G  ++D KT LQE+        P Y V 
Sbjct: 118 AIIGAIYLDSNFEKVKETILNWYQQRLAEIKPGDNQKDPKTRLQEYLQGIRQPLPTYNVV 177

Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  F V  +I       +G+  S+R AEQ AA ++L    I
Sbjct: 178 EIKGEAHNQTFKVTCKISQSDTLFEGIGSSRRKAEQAAAEKILSALKI 225


>gi|288553095|ref|YP_003425030.1| ribonuclease III [Bacillus pseudofirmus OF4]
 gi|288544255|gb|ADC48138.1| ribonuclease III [Bacillus pseudofirmus OF4]
          Length = 263

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             ++  L  +I   F NR LL +A THSS  + ++    +  ERLEFLGD +L L +S  
Sbjct: 32  KKQFDDLLLKIDLTFENRKLLIQAFTHSSYVNEHRIYSFQDNERLEFLGDAVLELAVSQF 91

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  F+S  EGE++    S+V   + ++ A EL+    + +             ++ ADV
Sbjct: 92  LYKKFNSMSEGEMTKLRASIVCEPSLARFAEELEFGELVLLGKGEEMTGGRNRPALLADV 151

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKV 177
            ES I ALYLD G+E    F+ +    +          D K++LQE+         +Y +
Sbjct: 152 FESFIGALYLDQGLEAVYKFLSQTMYPKINDGAFSHMMDFKSQLQEFIQRDNLGQIQYVI 211

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP H+  F   V+++      G   SK+ AEQ AA + L + 
Sbjct: 212 VQEIGPAHNREFVSEVQLNESKLGVGSGRSKKEAEQHAAQQALIKL 257


>gi|225025907|ref|ZP_03715099.1| hypothetical protein EUBHAL_00143 [Eubacterium hallii DSM 3353]
 gi|224956693|gb|EEG37902.1| hypothetical protein EUBHAL_00143 [Eubacterium hallii DSM 3353]
          Length = 232

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
           R+  LE++IGY F N+  L  A+THSS ++  +     + ERLEFLGD +L + IS  +F
Sbjct: 6   RFKGLEEKIGYTFTNKRTLALAMTHSSYANEQRGRRKANNERLEFLGDAVLEVTISDYVF 65

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EG L+   +SLV   T +  AR+++L  ++ +S            SI +D  E
Sbjct: 66  REYPGYNEGRLTKLRSSLVCEYTLAICARDVELGKYLLLSRGEDATGGRERDSILSDAFE 125

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+YLDGG++ A TF+  +  +       F  DAKT LQE   A      EY +T  
Sbjct: 126 ALIGAIYLDGGMDRARTFIHTHLLKDVEDKSLFY-DAKTILQEMVQAGPDPRLEYVLTRE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKR 222
           +GPDH+  FTV  +I G   A G   +K+ AEQ+AA +   +LK+
Sbjct: 185 AGPDHNKEFTVEAKIGGKTYAIGKGKTKKGAEQIAAYQTILLLKK 229


>gi|47097388|ref|ZP_00234939.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
 gi|217964043|ref|YP_002349721.1| ribonuclease III [Listeria monocytogenes HCC23]
 gi|254829200|ref|ZP_05233887.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
 gi|254899498|ref|ZP_05259422.1| ribonuclease III [Listeria monocytogenes J0161]
 gi|254912363|ref|ZP_05262375.1| ribonuclease III [Listeria monocytogenes J2818]
 gi|254936690|ref|ZP_05268387.1| ribonuclease III [Listeria monocytogenes F6900]
 gi|290893065|ref|ZP_06556054.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
 gi|254807893|sp|B8DDU8|RNC_LISMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|47014236|gb|EAL05218.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
 gi|217333313|gb|ACK39107.1| ribonuclease III [Listeria monocytogenes HCC23]
 gi|258601611|gb|EEW14936.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
 gi|258609286|gb|EEW21894.1| ribonuclease III [Listeria monocytogenes F6900]
 gi|290557425|gb|EFD90950.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
 gi|293590344|gb|EFF98678.1| ribonuclease III [Listeria monocytogenes J2818]
 gi|307571387|emb|CAR84566.1| ribonuclease III [Listeria monocytogenes L99]
 gi|313608181|gb|EFR84216.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
          Length = 229

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S
Sbjct: 1   MN--QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LFN +    EG ++    ++V   +  + A  +  + ++R+     K       ++ A
Sbjct: 59  DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           DV ES I ALYLD GI+   TF+++    +          D KT+LQE       V  EY
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +   +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226


>gi|315282805|ref|ZP_07871128.1| ribonuclease III [Listeria marthii FSL S4-120]
 gi|313613534|gb|EFR87355.1| ribonuclease III [Listeria marthii FSL S4-120]
          Length = 229

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S
Sbjct: 1   MN--QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LFN +    EG ++    ++V   +  + A  +  + ++R+     K       ++ A
Sbjct: 59  DYLFNKYPEMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           DV ES I ALYLD GI+   TF+++    +          D KT+LQE       V  EY
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +   +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226


>gi|187778952|ref|ZP_02995425.1| hypothetical protein CLOSPO_02547 [Clostridium sporogenes ATCC
           15579]
 gi|187772577|gb|EDU36379.1| hypothetical protein CLOSPO_02547 [Clostridium sporogenes ATCC
           15579]
          Length = 237

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 4/223 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63
              L+ ++   F +  LL+ ALTHSS ++     + YERLEFLGD +L L+IS  L+  +
Sbjct: 11  LKELQYKLKVCFKDEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKY 70

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           +  KEGEL+ +   +V   +  ++A+  DL  ++++S            SI AD VES+I
Sbjct: 71  EDKKEGELTRKRAIIVCENSLYEMAKRWDLGFYLQMSKGEELTGGRERVSILADCVESII 130

Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A  FV K +K+        +   D KT LQE       +T  Y++  + 
Sbjct: 131 AAIYLDKGLDEAREFVMKNFKEIIEKAMRDEIILDYKTTLQEIVQQNNDLTINYELLKQE 190

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H  +F   V I       G+  SK+ AEQ AA E LK  G
Sbjct: 191 GPPHRRKFFTNVTIDNEVRGTGIGYSKKEAEQNAAKEALKNLG 233


>gi|297584006|ref|YP_003699786.1| ribonuclease III [Bacillus selenitireducens MLS10]
 gi|297142463|gb|ADH99220.1| ribonuclease III [Bacillus selenitireducens MLS10]
          Length = 261

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 5/227 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             +Y    K +   + + ++  +A THSS  + ++    +  ERLEFLGD +L L IS  
Sbjct: 26  KAKYKQFLKTLHVPYQDDNVFIQAFTHSSYVNEHRIRPHDDNERLEFLGDAVLELAISQY 85

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  F+   EGE++    ++V   + +++A  L+   ++ +             ++ ADV
Sbjct: 86  LFKLFEQMSEGEMTKLRAAIVCEPSLAKLADSLEFGDYVLLGKGEEMTGGRKRPALLADV 145

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ I ALY+D G+E    F+++Y   +    S     D K++LQE+   +     +Y++
Sbjct: 146 FEAFIGALYVDLGMEAVYDFLERYVYPKIHDGSFSHMMDFKSQLQEFIQRENQGQVQYRI 205

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               GP H   F   V +       G+  SK+ AEQ+AA E LK+ G
Sbjct: 206 VEEKGPAHAREFVSEVMLDDDQLGTGVGKSKKEAEQMAAQEALKKLG 252


>gi|225870877|ref|YP_002746824.1| ribonuclease III [Streptococcus equi subsp. equi 4047]
 gi|254807900|sp|C0M8Y3|RNC_STRE4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|225700281|emb|CAW94534.1| ribonuclease III [Streptococcus equi subsp. equi 4047]
          Length = 230

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L  + LE      F ++ LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MKKLE-ALLENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG++S   +++V  E+ +  +R     ++I++     K       +I  
Sbjct: 60  EYLFAKYPKQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGRGEEKSGGRHRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD GIE    F+++    +  + + +  +D KT LQE   AK  V  +Y
Sbjct: 120 DLFEAFLGALLLDKGIEEVRRFLNQVMIPQVEQGTFEKVKDYKTCLQELLQAKGDVVIDY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +V   +GP H  +F V V +     ++G   SK+ AEQ AA   L + 
Sbjct: 180 QVISETGPAHAKQFEVAVLVGEDHLSKGTGRSKKLAEQDAAKNALAQL 227


>gi|52785573|ref|YP_091402.1| ribonuclease III [Bacillus licheniformis ATCC 14580]
 gi|163119429|ref|YP_078987.2| ribonuclease III [Bacillus licheniformis ATCC 14580]
 gi|319646025|ref|ZP_08000255.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
 gi|81385589|sp|Q65JQ5|RNC_BACLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|52348075|gb|AAU40709.1| Rnc [Bacillus licheniformis ATCC 14580]
 gi|145902936|gb|AAU23349.2| ribonuclease III [Bacillus licheniformis ATCC 14580]
 gi|317391775|gb|EFV72572.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
          Length = 249

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 106/227 (46%), Gaps = 5/227 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57
            A ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS 
Sbjct: 16  KAEQFKKFQERISVQFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQ 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+  + +  EG+L+    ++V   +   +A EL     + +             ++ AD
Sbjct: 76  FLYAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGELVLLGKGEEMTGGRKRPALLAD 135

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYK 176
           V E+ I ALYLD G+E   TF+  Y   +          D K++LQE+         EYK
Sbjct: 136 VFEAFIGALYLDQGLEAVVTFLKAYVFPKIDDGAFSHVMDFKSQLQEFVQRDGRGILEYK 195

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GP H+  F   V + G     G   SK+ AEQ AA E L + 
Sbjct: 196 ILQEKGPAHNREFEANVSLKGEVLGVGSGRSKKEAEQHAAQEALAKL 242


>gi|262277162|ref|ZP_06054955.1| ribonuclease III [alpha proteobacterium HIMB114]
 gi|262224265|gb|EEY74724.1| ribonuclease III [alpha proteobacterium HIMB114]
          Length = 225

 Score =  151 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 122/225 (54%), Gaps = 1/225 (0%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M     + +EK +   F N+SL+E+A TH S S +   + ERLEFLGDR+LGL+I++ L 
Sbjct: 1   MKKNDLAQVEKILEIKFNNKSLIEQAFTHKSKSVNINNNNERLEFLGDRVLGLVIASYLN 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +++    EG L  +  SLV+ ETCS++   L++  F+ +S   +++       I  D+ E
Sbjct: 61  DNYPKDSEGVLDKKLASLVNKETCSKIISSLEIDRFLSLSEAQKQNKA-GNKKILGDLCE 119

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           S+I A+++D G E    F+ K WK+    + +   D KT+LQE++   +   P YK    
Sbjct: 120 SIIGAVFMDKGFEQTKKFILKIWKENLKNTTQVFIDPKTKLQEYSLKLYKKLPVYKYISN 179

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           SGP H P F V V I           SK+ AE  AA ++++   I
Sbjct: 180 SGPSHKPNFRVSVSIEQSKSFVATGTSKKNAETNAAKKLIEYLKI 224


>gi|260881779|ref|ZP_05893556.1| ribonuclease III [Mitsuokella multacida DSM 20544]
 gi|260847870|gb|EEX67877.1| ribonuclease III [Mitsuokella multacida DSM 20544]
          Length = 247

 Score =  151 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFN 61
           +   L +R+G  F + +LL++ALTH+S ++  + +    ERLEFLGD +L L  ST L+ 
Sbjct: 16  QLLVLSERLGVTFHDIALLDQALTHTSYANESKRNTAHNERLEFLGDAVLELASSTYLYE 75

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF    EGEL+    S+V + T +++A  L L  ++ +             +   DV E+
Sbjct: 76  HFPEMPEGELTKTRASIVCSTTLAKLATGLHLGDYLLLGRGEEMGGGRTRQTNLEDVFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A+YLD G E A  +V +  +     +      +D KT LQE    K G +  Y++  
Sbjct: 136 VIGAVYLDQGWEAAQAYVVRQLRGEFENAEHGAILKDYKTILQEIVFRKEGQSIAYELVS 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            SGPDH   FT  V ++G    +G   SK+ AEQ AA   L++ 
Sbjct: 196 ESGPDHAKEFTFRVRVTGKVMGEGTGHSKKEAEQHAARRALEKI 239


>gi|165975962|ref|YP_001651555.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|238687533|sp|B0BUA6|RNC_ACTPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|165876063|gb|ABY69111.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 223

 Score =  151 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY F N   L +ALTH S      ++ ERLEFLGD IL   I   LF  F
Sbjct: 1   MQLERLQKKLGYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRATLVREQTLAILARKFGLGEYMKLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V    
Sbjct: 118 AAIYLDAGMDKAIAQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLNIK 177

Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 178 GEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 220


>gi|296444865|ref|ZP_06886827.1| ribonuclease III [Methylosinus trichosporium OB3b]
 gi|296257533|gb|EFH04598.1| ribonuclease III [Methylosinus trichosporium OB3b]
          Length = 233

 Score =  151 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 102/223 (45%), Positives = 132/223 (59%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
                 LE  +G+ F NR LLE ALTH S S +  ESYERLEFLGDR+LG++++ LL+  
Sbjct: 6   RKDLEALEASVGHGFVNRGLLEHALTHVSGSTARTESYERLEFLGDRVLGVVVAHLLYET 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F +  EGELS R   LV  E+C++VA    +  F+R+     +       +I  D+ E++
Sbjct: 66  FPAESEGELSRRLADLVRKESCAEVAERWGVGPFMRLGDGEAQTGGRKKRAILGDMCEAI 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I A+YLDGG   A   V + +  R    G+  RDAKT LQEWA A+   TP Y++T RSG
Sbjct: 126 IGAVYLDGGAAAAEAVVREAFGARMQTQGRRLRDAKTSLQEWAQARRLPTPCYRMTSRSG 185

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PDH P F V V + G  PA+G   SKR AEQ AA   L REGI
Sbjct: 186 PDHAPFFKVEVVVEGFVPAEGGGASKRVAEQSAAQAFLDREGI 228


>gi|187251071|ref|YP_001875553.1| ribonuclease III [Elusimicrobium minutum Pei191]
 gi|186971231|gb|ACC98216.1| Ribonuclease III [Elusimicrobium minutum Pei191]
          Length = 221

 Score =  151 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + +E+ + Y+F N+ L+ +ALTH S +   +  +  ERLEFLGD +LGL+ +  +++ + 
Sbjct: 3   NDIEQVLDYSFKNKELIREALTHKSFTGERRSVKHNERLEFLGDSVLGLVAAEYIYSKYP 62

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG LS   + LVS       A ELDL +++ + +           SI ++ +E+++ 
Sbjct: 63  EVEEGVLSKIKSGLVSRHNLYLWASELDLGAYLALGAGEAATGGRTRESILSNAMEAVLG 122

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG E     ++K+         +   D K+ LQE    K+   PEY+V    GP+
Sbjct: 123 AVYLDGGFESVKNIINKWIS--TQSLTEVSSDYKSTLQEIVQKKYKSVPEYEVIQTVGPE 180

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H+  FTVVV        +G   +K+ AEQ AA   L+   
Sbjct: 181 HEKIFTVVVSSLKKELGRGRGKNKKLAEQDAAKNALENLK 220


>gi|251797476|ref|YP_003012207.1| ribonuclease III [Paenibacillus sp. JDR-2]
 gi|247545102|gb|ACT02121.1| ribonuclease III [Paenibacillus sp. JDR-2]
          Length = 231

 Score =  151 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 6/229 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M     + L+ R+   F    LL++A TH+S  + ++    E  ERLEFLGD +L LL+S
Sbjct: 1   MKRDSINELQTRLQLRFKQLKLLKQAFTHTSYVNEHKHGTIEHNERLEFLGDAVLQLLVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  + +  EGEL+    S+V   + +Q A  L+L + I++     +       ++ A
Sbjct: 61  EYLFAAYPNRPEGELTRMRASVVCEPSLAQFAERLELGAHIQLGRGEEQLGGRQRPALLA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPE 174
           D+ E+ + A++LD GIE    F++ +          G   +D K++LQE A  K     E
Sbjct: 121 DLFEAFVGAIFLDAGIERTRAFLETHMFPYIESNDYGLLVKDFKSKLQERAQHKGLGAVE 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y++    GP HD  F V V I  +    G   +K+ AEQ AAA   +  
Sbjct: 181 YRIMEERGPAHDREFVVEVCIGEIPYGNGSGRTKKEAEQRAAAVAWQSL 229


>gi|169824545|ref|YP_001692156.1| ribonuclease III [Finegoldia magna ATCC 29328]
 gi|302380368|ref|ZP_07268838.1| ribonuclease III [Finegoldia magna ACS-171-V-Col3]
 gi|303233642|ref|ZP_07320296.1| ribonuclease III [Finegoldia magna BVS033A4]
 gi|167831350|dbj|BAG08266.1| ribonuclease III [Finegoldia magna ATCC 29328]
 gi|302311858|gb|EFK93869.1| ribonuclease III [Finegoldia magna ACS-171-V-Col3]
 gi|302495076|gb|EFL54828.1| ribonuclease III [Finegoldia magna BVS033A4]
          Length = 238

 Score =  151 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 75/236 (31%), Positives = 113/236 (47%), Gaps = 10/236 (4%)

Query: 1   MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGL 53
           M      +   LE+++ Y F + +LL  A  HSS  +  +     S ERLEFLGD +L L
Sbjct: 1   MDKARIEKLHELEEKLDYRFTDINLLNLAFFHSSYGNENKAYKNISNERLEFLGDSVLDL 60

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           ++S  L+N   S KEG ++   + +V  ++ S +A+ L+L  ++ +         S   S
Sbjct: 61  VVSDFLYNSKSSLKEGAMTKIRSQMVCEKSFSNMAKYLELGKYLMMGHGEFISGGSEKPS 120

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFG 170
           + AD  E++  A+YLD G E A   V+  +K   +   +      D KT LQE    K  
Sbjct: 121 VLADTFEAVFGAIYLDSGYESAFKIVENKFKSLFIAEIETKSSFIDYKTMLQENNQKKSR 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
              +YK+    GPDHD +F V V    L    G   SK+ AEQ AA   L +  + 
Sbjct: 181 DKLKYKIVKEEGPDHDKKFYVDVYEGNLVIGSGFGSSKKHAEQDAARNALIKLRVI 236


>gi|269958484|ref|YP_003328271.1| ribonuclease 3 [Anaplasma centrale str. Israel]
 gi|269848313|gb|ACZ48957.1| ribonuclease 3 [Anaplasma centrale str. Israel]
          Length = 249

 Score =  151 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 114/227 (50%), Gaps = 5/227 (2%)

Query: 2   SALRYSTL----EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIST 57
             +    L     +  GY F +  LL ++LTH S+S     +YERLEFLGD +L + +S 
Sbjct: 6   DNIDKENLACRVYEVTGYRFRDLDLLLESLTHPSLSRESAANYERLEFLGDAVLSMAVSE 65

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +L+  F    EG L+ +  +LV      ++AR + L   I +SS       S       +
Sbjct: 66  MLYRLFPDDDEGCLTQKRTALVRGSEVVEIARSIGLGGLILMSSGEMSCGGSDNPGTLEN 125

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            +E+LI A+Y+DG  E    F+ ++W  R    S    +D KT LQEW  ++    P YK
Sbjct: 126 ALEALIGAMYIDGSSEDYKNFIREHWFSRAQRMSSAPPQDPKTALQEWVQSRGWTVPLYK 185

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +SGP+H P F V V I G     G   SK+ AEQ AA  +LKR 
Sbjct: 186 LVSKSGPEHKPVFAVEVSIQGHGSILGTGSSKKLAEQEAAKLMLKRI 232


>gi|224418414|ref|ZP_03656420.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
 gi|253827732|ref|ZP_04870617.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
 gi|313141944|ref|ZP_07804137.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
 gi|253511138|gb|EES89797.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
 gi|313130975|gb|EFR48592.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
          Length = 224

 Score =  151 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 4/223 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +     ++ +GY F+N++LL++ALTH S   S     ERLEFLGD +L L+I   L+  F
Sbjct: 1   MDLKDFQQYLGYHFSNQNLLQEALTHKSAKKST--HNERLEFLGDAVLDLIIGEFLYKKF 58

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             + EGELS    S+V+ +  +++AR L++  ++ +S    ++      SI ++  E+++
Sbjct: 59  PHSPEGELSKMRASMVNEKAFAKIARYLNIGEYLYISHSEEQNNGREKDSILSNAFEAIV 118

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YL+ G+E   T V K       K        D KT LQE   A FG+TPEY V    
Sbjct: 119 GAIYLESGLEKVQTIVLKILDILYPKIDLENLFYDYKTSLQELTQALFGITPEYVVLDSK 178

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GPDH+  F + V I     AQ    SK+ A+Q  A   LK   
Sbjct: 179 GPDHNKEFLMGVFIQNKEYAQAKGKSKKEAQQNCAKIALKILK 221


>gi|91205996|ref|YP_538351.1| ribonuclease III [Rickettsia bellii RML369-C]
 gi|157826640|ref|YP_001495704.1| ribonuclease III [Rickettsia bellii OSU 85-389]
 gi|122425284|sp|Q1RHA2|RNC_RICBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043340|sp|A8GYE2|RNC_RICB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|91069540|gb|ABE05262.1| Ribonuclease III [Rickettsia bellii RML369-C]
 gi|157801944|gb|ABV78667.1| ribonuclease III [Rickettsia bellii OSU 85-389]
          Length = 227

 Score =  151 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 80/230 (34%), Positives = 119/230 (51%), Gaps = 7/230 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIS 56
           M +  +  LEK + Y+F N++LL +AL+H S+   +     + YERLEFLGD +L L+I+
Sbjct: 1   MES--FEELEKLLDYSFKNKALLTEALSHPSLRQHHEYKANKDYERLEFLGDAVLNLIIT 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +LFN+F    EG L+   + LV  ET   V  +L L ++I ++            +   
Sbjct: 59  EILFNNFKEYNEGNLAKIRSYLVCKETICVVGAKLGLKNYIIMTHGEEIAGGRDNPNNIE 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +V E+LIAA+YLD  I      + K W +          D KT LQEWA +K    P Y+
Sbjct: 119 NVTEALIAAIYLDSDITTIHNIIGKLWAEFIKVKDLTDYDPKTALQEWAQSKDHHIPIYR 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           +  R G  H   FTV V+I+G     G   S + AE+ AA E+L +  + 
Sbjct: 179 LIKREGVAHLSTFTVSVKINGYEQ-TGKGHSIKEAEKNAARELLHKLKLL 227


>gi|306829619|ref|ZP_07462809.1| ribonuclease III [Streptococcus mitis ATCC 6249]
 gi|304428705|gb|EFM31795.1| ribonuclease III [Streptococcus mitis ATCC 6249]
          Length = 232

 Score =  151 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 110/227 (48%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+ R    FA++ LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKDRFAIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPRKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +  +D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVVRVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +VT  +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 180 QVTSETGPAHDKIFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|307722018|ref|YP_003893158.1| RNAse III [Sulfurimonas autotrophica DSM 16294]
 gi|306980111|gb|ADN10146.1| RNAse III [Sulfurimonas autotrophica DSM 16294]
          Length = 227

 Score =  151 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 117/226 (51%), Gaps = 5/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M      TLE+++GY F ++ L+ +ALTH S    Y    ERLEFLGD +L L++   LF
Sbjct: 1   MHK-NIKTLEEKLGYEFKDKKLIIEALTHKSYKQPY--DNERLEFLGDAVLDLVVGEYLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F ++ EG+LS    SLV+     ++AR L L  +I +S+    +     +S+ ++  E
Sbjct: 58  RKFRTSDEGKLSKIRASLVNETGFDKLARALHLGDYILLSNAEDNNGGREKSSLLSNAFE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+YL+ G+           ++   +       RD KT LQE   A+FG+TPEYKV 
Sbjct: 118 AIMGAVYLEAGLGEVQRIAIDLIEKNHEEISLDSLFRDFKTTLQELTQARFGITPEYKVL 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDH   F V V I     A+    SK+ A+Q AA   ++   
Sbjct: 178 ASRGPDHQKEFEVGVFIEDKEYARANGKSKKIAQQEAARVAVELLN 223


>gi|307708796|ref|ZP_07645258.1| ribonuclease III [Streptococcus mitis NCTC 12261]
 gi|307615162|gb|EFN94373.1| ribonuclease III [Streptococcus mitis NCTC 12261]
          Length = 232

 Score =  151 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +   D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 180 QVISETGPAHDKVFEVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|58584360|ref|YP_197933.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|75498100|sp|Q5GTI3|RNC_WOLTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|58418676|gb|AAW70691.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 243

 Score =  151 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 85/228 (37%), Positives = 124/228 (54%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L   T+ K I Y F N ++LE+ALTH S++        E+YERLEFLGD IL +++S
Sbjct: 11  MEDLN-DTISKIINYRFKNDAILEEALTHPSLNKRNSKNQIENYERLEFLGDSILNMIVS 69

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +LF  F   KEG L+ R   LV   T + VA+E+ L +FI +++  R +          
Sbjct: 70  AILFRLFPKEKEGALARRKTDLVCGNTIANVAKEIKLGNFIIMNNSERCNGGKRNLKNLE 129

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + +E+LI A+Y+DGG      FV K+W++RA       +D KT LQEW        PEY+
Sbjct: 130 NALEALIGAIYIDGGFANVKKFVTKHWEERAKGMLSLPQDPKTSLQEWTQKNKLPLPEYE 189

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  ++GP H P FT+ + I           SK+ AEQ AA  +L++  
Sbjct: 190 LMKQTGPAHSPEFTISICIENYGKVFACASSKKVAEQKAAELMLEKIN 237


>gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309468|ref|ZP_03591315.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313793|ref|ZP_03595598.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221318717|ref|ZP_03600011.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322988|ref|ZP_03604282.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321315359|ref|YP_004207646.1| ribonuclease III [Bacillus subtilis BSn5]
 gi|7531275|sp|P51833|RNC_BACSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|2633965|emb|CAB13466.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
 gi|291484144|dbj|BAI85219.1| ribonuclease III [Bacillus subtilis subsp. natto BEST195]
 gi|320021633|gb|ADV96619.1| ribonuclease III [Bacillus subtilis BSn5]
          Length = 249

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 108/224 (48%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  LF
Sbjct: 19  QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLF 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG+L+    ++V   +   +A EL     + +             ++ ADV E
Sbjct: 79  AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G+E   +F+  Y   +          D K++LQE+       + EYK++ 
Sbjct: 139 AFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQLQEYVQRDGKGSLEYKISN 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H+  F  +V + G     G   SK+ AEQ AA E L + 
Sbjct: 199 EKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAKL 242


>gi|67459568|ref|YP_247192.1| ribonuclease III [Rickettsia felis URRWXCal2]
 gi|75536032|sp|Q4UKA8|RNC_RICFE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|67005101|gb|AAY62027.1| Ribonuclease III [Rickettsia felis URRWXCal2]
          Length = 225

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 114/223 (51%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +  LEK +GY+F N+ LL +AL+H S+   ++    + YERLEFLGD +L L+++ +LF 
Sbjct: 4   FEKLEKLLGYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVVTEILFK 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +F +  EG L+   + LV  ET   V  +L L  +I ++            +   +  E+
Sbjct: 64  NFANYNEGNLAKIRSYLVCKETICVVGTKLTLKDYIIMTHGEEVAGGRDNPNNIENATEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           LIAA+YLD  IE     + K W +          D KT LQEWA A     P Y++  R 
Sbjct: 124 LIAAIYLDSNIETTRNIIGKLWAEFIKIQNLTDYDPKTALQEWAQASSHHLPIYRLIKRE 183

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           G  H   FTV+V++       G   S + AE+ AA ++L +  
Sbjct: 184 GAAHSSTFTVLVKVKDYKQ-IGTGHSIKEAEKNAARKLLHKLK 225


>gi|283953747|ref|ZP_06371278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414]
 gi|283794788|gb|EFC33526.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414]
          Length = 224

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  +    LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF
Sbjct: 1   MKNI--EKLEQNLTYEFKDKNLLMHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG+LS    +LV+ ++ +++A  L+L  FI +S     +     +SI +D +E
Sbjct: 57  HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKSSILSDALE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++L+ G E A T   +  ++   +       +D KT+LQE    K G TP+Y+  
Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 177 RAFGPDHLKQFEIALMLDGKEIARAIAGSKKEAQQMAAKIALEKLG 222


>gi|223041196|ref|ZP_03611448.1| ribonuclease III [Campylobacter rectus RM3267]
 gi|222877555|gb|EEF12684.1| ribonuclease III [Campylobacter rectus RM3267]
          Length = 222

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 113/219 (51%), Gaps = 4/219 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LE+++GY F +  LL+ ALTH S+      + ERLEFLGD ++ L+I   LF+ F    
Sbjct: 3   NLEEKLGYKFKDEKLLKTALTHKSV--KGGANNERLEFLGDAVMDLVIGDYLFHKFSRLS 60

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS    +LV+ ++ +++A+ L+L   I +S     +      SI +D  E+L+ A+Y
Sbjct: 61  EGDLSKLRAALVNEKSFAELAKYLNLGQLINISPAEEHNGGRLKASILSDAFEALMGAIY 120

Query: 128 LDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           L+ G +     +          +   +  +D KT LQE   A+F   P+Y +    GPDH
Sbjct: 121 LESGFDAVRAASLKAFERCYPDINFDRMVKDYKTALQELTQARFAEIPKYVLVGSKGPDH 180

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              F + + ++    ++    SK+ AEQ AA   L+  G
Sbjct: 181 KKEFEIALMLNEREISRAAGKSKKEAEQKAAKTALEILG 219


>gi|325265084|ref|ZP_08131811.1| ribonuclease III [Clostridium sp. D5]
 gi|324029774|gb|EGB91062.1| ribonuclease III [Clostridium sp. D5]
          Length = 232

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/233 (34%), Positives = 118/233 (50%), Gaps = 10/233 (4%)

Query: 1   MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLL 54
           M  +      LEK+IGY F + SLL +A+ HSS ++          ERLEFLGD +L L+
Sbjct: 1   MKYMSDNLKELEKKIGYKFRDFSLLRRAMMHSSFTNEKHLEKYHCNERLEFLGDAVLELV 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
            S  LF       EGEL+    S+V   + +  AR++DL S++ +             SI
Sbjct: 61  SSEYLFLESPKVSEGELTKTRASMVCEPSLAFCARDIDLGSYLLLGRGEEATGGRARDSI 120

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
            +D +E+LI A+YLDGG   A  F+ ++     L+  K   D+KT LQE   A+   +  
Sbjct: 121 TSDALEALIGAIYLDGGFTNAKEFIHRFIL-TDLEDKKLFFDSKTILQEIVQARMAGSIS 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKREG 224
           Y++    GPDH+  F V V I       G   +K+AAEQ AA +    L++E 
Sbjct: 180 YRLIKEEGPDHNKAFFVEVMIEENGYGIGKGRTKKAAEQEAAYKAILELRKEK 232


>gi|169830829|ref|YP_001716811.1| ribonuclease III [Candidatus Desulforudis audaxviator MP104C]
 gi|169637673|gb|ACA59179.1| Ribonuclease III [Candidatus Desulforudis audaxviator MP104C]
          Length = 235

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 112/220 (50%), Gaps = 4/220 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
             +  ++ IG  + +  LL +ALTHSS S+ +      +RLEFLGD +L +++S  L+  
Sbjct: 6   NLAEFQEGIGLFWRDPDLLLEALTHSSFSYEHPGHRHNQRLEFLGDAVLEIVVSEHLYRR 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A EG+L+    ++V     + VARE++L +++R+             S+ AD +E+L
Sbjct: 66  LPDAPEGDLTKIRAAVVCEPALAHVAREMNLGTYLRMGRGEELSGGRERPSVLADALEAL 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + ALYLD G+EVA  F  +  +     +  GK   D KT LQE    +      Y +   
Sbjct: 126 LGALYLDQGLEVARWFALQSLEPIISATLAGKGEADYKTRLQELLQKRSPEPLRYVIIKE 185

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GPDH+  FT  V   G    +G   +K+ AEQ AA E L
Sbjct: 186 EGPDHNKLFTAGVVYRGKVLGRGTGRTKKEAEQHAAREAL 225


>gi|251791907|ref|YP_003006627.1| ribonuclease III [Aggregatibacter aphrophilus NJ8700]
 gi|247533294|gb|ACS96540.1| ribonuclease III [Aggregatibacter aphrophilus NJ8700]
          Length = 226

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 115/228 (50%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       L+++I Y F +  LL++ALTH S  H   +  ERLEFLGD IL L I+  LF
Sbjct: 1   MRTDNLDRLQRKIDYQFQDTGLLKQALTHRSAGH---KHNERLEFLGDAILNLTIAEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+  L  ++ +     K       SI AD VE
Sbjct: 58  HQFPKCNEGELSRMRATLVREPTLAILARDFQLGDYLSLGQGELKSGGFRRESILADCVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD  +  A   V ++++   + ++ G  ++DAKT LQE+        P Y + 
Sbjct: 118 AIIGAISLDSNLTNATEIVTRWYQPLLKDIQPGDNQKDAKTRLQEYLQGNRLPVPTYNIV 177

Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  FTV   I +      G   S+R AEQ AA ++L+   I
Sbjct: 178 NIQGEAHNQLFTVECSIQNNDRTFIGKGSSRRKAEQAAAEQILQELKI 225


>gi|16800985|ref|NP_471253.1| ribonuclease III [Listeria innocua Clip11262]
 gi|22654065|sp|Q92AK3|RNC_LISIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|16414420|emb|CAC97149.1| rncS [Listeria innocua Clip11262]
 gi|313618316|gb|EFR90363.1| ribonuclease III [Listeria innocua FSL S4-378]
          Length = 229

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  ++  L++ +G+ F N  LL++A THSS  + ++    +  ERLEFLGD +L L +S
Sbjct: 1   MN--QWEELQESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LFN +    EG ++    ++V   +  + A  +  + ++R+     K       ++ A
Sbjct: 59  DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           DV ES I ALYLD GI+    F+++    +          D KT+LQE       V  EY
Sbjct: 119 DVFESFIGALYLDNGIDKVVKFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +   +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226


>gi|42523419|ref|NP_968799.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
 gi|81617308|sp|Q6MLR5|RNC_BDEBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|39575625|emb|CAE79792.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
          Length = 234

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 6/221 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
            +LE+R+G+ F N +LLE+ALTH S ++  +   E  E+LEFLGD +L L++   L+  F
Sbjct: 7   KSLEERVGHQFKNPALLERALTHKSFANELRNTVEHNEKLEFLGDAVLDLVVGEFLYEKF 66

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +  EG LS +  S+V+ E  S++A E+ L   +++         +    + A   E+++
Sbjct: 67  PTDTEGGLSKKRASIVNEEVLSELALEMGLNKLMQLGKGEALTGGAQKPRLIASSFEAIV 126

Query: 124 AALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            ALYLDGG EVA +F+ + +     R      F RD KT LQE        TP Y+V   
Sbjct: 127 GALYLDGGFEVARSFIRQEFVPLADRVCGHEDFERDYKTRLQELVQKSSKETPRYEVLAE 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            GP HD  F V V++     AQG   SK+ AEQ+AA   L+
Sbjct: 187 EGPPHDREFLVCVKVKEDVWAQGRGRSKKNAEQMAAKNALE 227


>gi|222824476|ref|YP_002576050.1| ribonuclease III [Campylobacter lari RM2100]
 gi|222539697|gb|ACM64798.1| ribonuclease III [Campylobacter lari RM2100]
          Length = 222

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 111/221 (50%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L++R+ Y F N  LL +ALTH S    Y  + ERLEFLGD ++ L++   LF  F  
Sbjct: 2   LKKLQERLNYHFKNEQLLIEALTHKSYKKPY--NNERLEFLGDAVMDLVVGEFLFFKFQK 59

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG LS    +LV+ ++ + +A++LDL   I +S     +      SI +D  E+L+ A
Sbjct: 60  ESEGNLSKLRAALVNEKSFANLAQKLDLGECIFMSIAEENNDGRNKPSILSDAFEALMGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G E           +           +D KT+LQE   A    TPEY V    GP
Sbjct: 120 MYLEIGFEKTKNIALNLLNEVYPHIDTQSLFKDYKTKLQEITQANMAGTPEYIVVNAFGP 179

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH  +F + ++I G   A+ +  SK+ A+Q  A   L++ G
Sbjct: 180 DHKKQFEIAIKIQGKEFARAIAGSKKEAQQQCAKIALEKLG 220


>gi|255321781|ref|ZP_05362936.1| ribonuclease III [Campylobacter showae RM3277]
 gi|255301261|gb|EET80523.1| ribonuclease III [Campylobacter showae RM3277]
          Length = 222

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 113/219 (51%), Gaps = 4/219 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LE+++GY F +  LL+ ALTH S+      + ERLEFLGD ++ L+I   LF+ F    
Sbjct: 3   NLEEKLGYKFKDEKLLKTALTHKSV--KGGANNERLEFLGDAVMDLVIGDYLFHKFSRLS 60

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS    +LV+ ++ +++A+ L+L   I +S     +      SI +D  E+L+ A+Y
Sbjct: 61  EGDLSKLRAALVNEKSFAELAKYLNLGQLINISPAEEHNGGRAKASILSDAFEALMGAIY 120

Query: 128 LDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           L+ G +     +          +   +  +D KT LQE   A+F   P+Y +    GPDH
Sbjct: 121 LESGFDAVRAASLKAFERCYPDINFDRMVKDYKTALQELTQARFAQIPKYVLVGSKGPDH 180

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              F + + ++    ++    SK+ AEQ AA   L+  G
Sbjct: 181 KKEFEIALMLNEREISRAAGKSKKEAEQKAAKTALEILG 219


>gi|322389960|ref|ZP_08063500.1| ribonuclease III [Streptococcus parasanguinis ATCC 903]
 gi|321143396|gb|EFX38834.1| ribonuclease III [Streptococcus parasanguinis ATCC 903]
          Length = 242

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L +R    F++ SLL+ A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 10  MEKLQ-TLLSERFQIVFSDSSLLDTAFTHTSYANEHRLLKISHNERLEFLGDAVLQLVIS 68

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+    +  EG+LS   + +V  E+ +  +R+     +I++     K       +I  
Sbjct: 69  EYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDHYIKLGKGEEKSGGRDRDTILG 128

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD G+E    F+ +    +          D KT LQE       V  +Y
Sbjct: 129 DLFEAFLGALLLDQGVEAVKRFIYQVMIPKVETGQFSQVIDYKTRLQELLQVHGDVEIQY 188

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +V   SGP H   F V V ++G     G   SK+ AEQ AA   ++
Sbjct: 189 QVVSESGPAHAKEFEVEVFVNGKTLGHGHGRSKKLAEQEAARNAVE 234


>gi|308173556|ref|YP_003920261.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7]
 gi|307606420|emb|CBI42791.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7]
 gi|328553511|gb|AEB24003.1| ribonuclease III [Bacillus amyloliquefaciens TA208]
 gi|328911697|gb|AEB63293.1| ribonuclease III [Bacillus amyloliquefaciens LL3]
          Length = 249

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 107/224 (47%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  LF
Sbjct: 19  QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG+L+    ++V   +   +A EL     + +             ++ ADV E
Sbjct: 79  AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G+E    F+  Y   +          D K++LQE+       + EYK+  
Sbjct: 139 AFIGALYLDQGLEPVQQFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRDGKGSLEYKILN 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H+  F  +V + G A   G   SK+ AEQ AA E L + 
Sbjct: 199 EKGPAHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAKL 242


>gi|167854942|ref|ZP_02477717.1| GTP-binding protein LepA [Haemophilus parasuis 29755]
 gi|167853899|gb|EDS25138.1| GTP-binding protein LepA [Haemophilus parasuis 29755]
          Length = 223

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY FAN   L +ALTH S +    ++ ERLEFLGD IL   I   L+  F
Sbjct: 1   MQLERLQKKLGYQFANLDYLTQALTHRSAA---SKNNERLEFLGDSILNFAIGKALYEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + VAR+ +L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKADEGELSRMRAALVKEQTLAVVARQFELGEYMKLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD GI+ A   V  +++Q    ++ G+ ++D KT LQE+   +    P Y+V    
Sbjct: 118 AAVYLDAGIDRAMERVHCWYQQLLNDMQLGEAQKDPKTRLQEYLQGRKLPLPTYEVIDIK 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
           G  H+  F V  ++  +     G   S+R AEQ AA +V+K  GI
Sbjct: 178 GEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAALQVIKVLGI 222


>gi|120555160|ref|YP_959511.1| ribonuclease III [Marinobacter aquaeolei VT8]
 gi|120325009|gb|ABM19324.1| RNAse III [Marinobacter aquaeolei VT8]
          Length = 229

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/229 (35%), Positives = 119/229 (51%), Gaps = 7/229 (3%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           MS+      L++RIGY F     L  ALTH S  +   ++ ERLEFLGD I+ ++I+  L
Sbjct: 1   MSSQPDLDQLQRRIGYQFKEPERLLLALTHRSFGN---QNNERLEFLGDSIVNMVIAEYL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + HF+ A+EG+LS     +V   T +++ RE  L  ++R+ S   K       SI AD V
Sbjct: 58  YLHFEKAREGQLSRLRARMVKGVTLAEIGREFQLGQYLRLGSGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ES+I A+YLD         V ++++QR   L     ++D KT LQE+  ++    P Y+V
Sbjct: 118 ESIIGAIYLDSDFHTCRAQVLRWFEQRLANLDIQDTQKDPKTRLQEYLQSRQFPLPRYEV 177

Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
               G  H+  F V   +  L     G   S+R AEQ AA   LK+ G+
Sbjct: 178 ISVDGEAHNQTFHVSCALPSLDRKTTGTGSSRRVAEQQAARNALKQLGV 226


>gi|302386299|ref|YP_003822121.1| ribonuclease III [Clostridium saccharolyticum WM1]
 gi|302196927|gb|ADL04498.1| ribonuclease III [Clostridium saccharolyticum WM1]
          Length = 233

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 113/220 (51%), Gaps = 6/220 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           MS      LE+RIGY F++R L+ +A+THSS ++ ++    E  ERLEFLGD +L ++ S
Sbjct: 1   MSR-NLKELEERIGYRFSDRHLMTQAMTHSSYANEHRLNKLECNERLEFLGDSVLEVVSS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L++ +    EG+L+    S+V   T +  A  + L  ++ +             SI +
Sbjct: 60  DCLYHKYPEKPEGDLTKIRASIVCEPTLAYCAESIRLGEYLLLGKGEEATGGRGRASIVS 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LI A+YLDGG   A  F+ ++         +   D+KT LQE    K      Y+
Sbjct: 120 DAMEALIGAIYLDGGFANAKEFILRFIMNDLEHK-QLFYDSKTILQEIVQRKTDEPLSYE 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           +    GPDH+  F   V I      QG   +K+AAEQVAA
Sbjct: 179 LLREEGPDHNKVFEAQVLIGQEVIGQGTGRTKKAAEQVAA 218


>gi|219870402|ref|YP_002474777.1| ribonuclease III [Haemophilus parasuis SH0165]
 gi|254807496|sp|B8F3C7|RNC_HAEPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|219690606|gb|ACL31829.1| ribonuclease III/dsRNA-specific ribonuclease [Haemophilus parasuis
           SH0165]
          Length = 223

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY FAN   L +ALTH S +    ++ ERLEFLGD IL   I   L+  F
Sbjct: 1   MQLERLQKKLGYQFANLDYLTQALTHRSAA---SKNNERLEFLGDSILNFAIGKALYEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + VAR+ +L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRAALVKEQTLAVVARQFELGEYMKLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD GI+ A   V  +++Q    ++ G+ ++D KT LQE+   +    P Y+V    
Sbjct: 118 AAVYLDAGIDRAMERVHCWYQQLLNDMQLGEAQKDPKTRLQEYLQGRKLPLPTYEVIDIK 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
           G  H+  F V  ++  +     G   S+R AEQ AA +V+K  GI
Sbjct: 178 GEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAALQVIKVLGI 222


>gi|21672530|ref|NP_660597.1| ribonuclease III [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25009123|sp|Q8K9R1|RNC_BUCAP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|21623153|gb|AAM67808.1| ribonuclease III [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 226

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 125/228 (54%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + +++ +GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNHIVANKIQQILGYTFTHQELLKQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            HF    EG++S    +LV   T +++A E DL  ++++     K       SI A+ VE
Sbjct: 58  QHFPYIDEGDMSRMRATLVRGNTLAEIAYEFDLGEYLQLGQGELKSGGFRRESILANTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI ++YLD  I+     + K++++R   +  G  ++D KT LQE+  +K    P Y + 
Sbjct: 118 ALIGSIYLDSNIKTVEELILKWYEKRLEKISPGDTQKDPKTRLQEYLQSKHLSLPSYFIV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  FT+  E+S L     G   S+R AEQ AA + L + G+
Sbjct: 178 EVYGEAHNQLFTIHCEVSTLSTSFIGKGTSRRKAEQDAARKALIKLGV 225


>gi|330814142|ref|YP_004358381.1| signal peptidase I [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487237|gb|AEA81642.1| signal peptidase I [Candidatus Pelagibacter sp. IMCC9063]
          Length = 224

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 88/225 (39%), Positives = 127/225 (56%), Gaps = 1/225 (0%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M     + +EK +   F N + LEKALTH SI+     + ERLEF+GDR+LGL+I+T L 
Sbjct: 1   MDKNYLTKVEKILNIKFKNTNFLEKALTHKSITKISASNNERLEFIGDRVLGLVIATKLS 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EG L  +  SLV+ +TCSQ+  +L+L  +I +SS  +K+       I  D+ E
Sbjct: 61  ILYPEDVEGSLDKKLASLVNKDTCSQIIEKLNLGKYILLSSSQQKNKI-GHKKIYGDLCE 119

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLI A+YLD G   A  FV   W++   +S     D+KT+LQE++   F V P YK    
Sbjct: 120 SLIGAVYLDKGFSEANKFVLSLWRENLKRSTIVEVDSKTQLQEYSLKFFKVLPIYKNLSN 179

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            GP H P F + V+I+      G   SK+ AEQ+AA+++LK   +
Sbjct: 180 KGPSHKPSFKISVKITNSKLCTGEGTSKKKAEQLAASKLLKTLNL 224


>gi|300023749|ref|YP_003756360.1| ribonuclease III [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525570|gb|ADJ24039.1| ribonuclease III [Hyphomicrobium denitrificans ATCC 51888]
          Length = 235

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 95/222 (42%), Positives = 134/222 (60%), Gaps = 2/222 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
           ++  LE ++G+ F +  LLE+ALTH+S+      +   ERLEF+GDR+LGL I+ +L   
Sbjct: 6   KFKELETKLGHRFKDPGLLERALTHASVRGGKIARFDNERLEFIGDRVLGLAIAEILNQQ 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  A EGEL+ R+N LV  E C++VAR + L + + +S           T+I AD  E+L
Sbjct: 66  YPEASEGELARRYNRLVRGEACAKVARNIGLGAHLILSESEADSGGRDKTTILADAAEAL 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + A+++D G E A   V K W++++    +   DAK+ LQEWA  +    P+Y V  R G
Sbjct: 126 LGAVFIDVGFEKARAVVRKLWQEQSEPVPEVAVDAKSALQEWAQGQGLALPKYTVVSRKG 185

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH PRFT  V I+G APAQG   SKR AEQ AA  +L REG
Sbjct: 186 PDHAPRFTAEVIIAGRAPAQGEGASKRIAEQAAATALLTREG 227


>gi|224372163|ref|YP_002606535.1| ribonuclease III [Nautilia profundicola AmH]
 gi|223589278|gb|ACM93014.1| ribonuclease III [Nautilia profundicola AmH]
          Length = 226

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 7/224 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++ S LEK +GY F N+ L+ +ALTH S       + ERLEFLGD ++ L++   LF+ F
Sbjct: 1   MQISELEKSLGYQFKNKKLITEALTHRSYKKEV--NNERLEFLGDAVMDLIVGEYLFHLF 58

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A+EG LS    +LV+ ++ +++A+ L+L  ++ +S     +      SI +   E++I
Sbjct: 59  PKAEEGILSKLRAALVNEDSFTRLAKRLNLGKYLYLSPAEENNNGREKPSILSSAFEAVI 118

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YL+ G E A     +  K+           +D KT LQE   A FGV PEY++   S
Sbjct: 119 GAIYLEAGFEKAKDVALRLLKEEFPIITPEELLKDYKTTLQEITQAHFGVVPEYRLISAS 178

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKR 222
           GPDH   F + V I     A+    SK+ A+Q  A    ++LK+
Sbjct: 179 GPDHKKEFEIGVFIQDKEYARAKGKSKKTAQQEGARLTIDMLKK 222


>gi|332074858|gb|EGI85330.1| ribonuclease III [Streptococcus pneumoniae GA41301]
          Length = 232

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      F +++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFTDKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +   D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVVIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|270308287|ref|YP_003330345.1| ribonuclease III [Dehalococcoides sp. VS]
 gi|270154179|gb|ACZ62017.1| ribonuclease III [Dehalococcoides sp. VS]
          Length = 248

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLL 59
           L  + LE+ +G  F N SLLE+AL H+S  +        S ER+EFLGD +LG++ +  L
Sbjct: 13  LDLTELEESLGVKFENPSLLEQALIHTSWVNENPTHLNGSNERMEFLGDAVLGVIFADRL 72

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F   +EG+L+   + LV  E+  +VA  ++L +++ +          F  +  A   
Sbjct: 73  YHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGNYLYLGRGEDVSKGRFKPANLAGAF 132

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177
           E+++AA+Y+D GI++    + + ++    +        D K+ LQE   A+  +TP Y++
Sbjct: 133 EAVLAAIYIDKGIDITREVIFRLFRTEMERVQTLSSNIDYKSRLQELIQAQMQMTPRYRI 192

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           T  SGP+H+  F   V       A+G   SK+ AE  AA   L++
Sbjct: 193 TNFSGPEHNRLFVAEVYTEDKVLAEGSGRSKKEAETSAAKAALQQ 237


>gi|289168052|ref|YP_003446321.1| ribonuclease III [Streptococcus mitis B6]
 gi|288907619|emb|CBJ22456.1| ribonuclease III [Streptococcus mitis B6]
          Length = 232

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +   D KT LQE       VT  Y
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVTIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|225860919|ref|YP_002742428.1| ribonuclease III [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229966|ref|ZP_06963647.1| ribonuclease III [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254343|ref|ZP_06977929.1| ribonuclease III [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502755|ref|YP_003724695.1| ribonuclease III [Streptococcus pneumoniae TCH8431/19A]
 gi|254807906|sp|C1CR56|RNC_STRZT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|225726586|gb|ACO22437.1| ribonuclease III [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238350|gb|ADI69481.1| ribonuclease III [Streptococcus pneumoniae TCH8431/19A]
 gi|327389483|gb|EGE87828.1| ribonuclease III [Streptococcus pneumoniae GA04375]
          Length = 232

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      F +++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFTDKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +   D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|57168805|ref|ZP_00367936.1| ribonuclease III Cj1635c [Campylobacter coli RM2228]
 gi|57019852|gb|EAL56535.1| ribonuclease III Cj1635c [Campylobacter coli RM2228]
          Length = 224

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  +    LE+++ Y F ++ LL  ALTH S    Y  + ERLEFLGD +L L++   LF
Sbjct: 1   MKNIEL--LEQKLAYKFKDKDLLIHALTHKSFKKPY--NNERLEFLGDAVLDLVVGEYLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG+LS    +LV+ ++ +++A  L+L  FI +S+    +      SI +D +E
Sbjct: 57  HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A++L+ G + A     K  ++   +       +D KT+LQE   AK G TP+Y+  
Sbjct: 117 AIMGAIHLEAGFDFARNIALKLIEKNFPQIDAKNLIKDYKTKLQEITQAKLGQTPQYETV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDH  +F + + ++G   A+ +  +K+ A+Q+AA   L++ G
Sbjct: 177 RAFGPDHLKQFEIALFLNGQELARAIAGNKKEAQQMAAKITLEKLG 222


>gi|322387562|ref|ZP_08061171.1| ribonuclease III [Streptococcus infantis ATCC 700779]
 gi|321141429|gb|EFX36925.1| ribonuclease III [Streptococcus infantis ATCC 700779]
          Length = 232

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 108/226 (47%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L  + LE+R G  F+++ LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELE-TVLEQRFGLVFSDKQLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +  +D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDLLTVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +V    GP HD  F V V + G +  +G   SK+ AEQ AA   ++
Sbjct: 180 QVISEIGPAHDKMFEVEVLVEGQSLGRGQGRSKKLAEQEAAKNAVE 225


>gi|28210930|ref|NP_781874.1| ribonuclease III [Clostridium tetani E88]
 gi|73917577|sp|Q895M9|RNC_CLOTE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28203369|gb|AAO35811.1| ribonuclease III [Clostridium tetani E88]
          Length = 235

 Score =  150 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 5/230 (2%)

Query: 1   MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57
           M+  +    L+ +I   F N  LL  ALTHSS ++  +  +  ERLEFLGD +L L+I+ 
Sbjct: 1   MNKYMDLKDLQNKIEIKFENIKLLHIALTHSSYANEKKRIQYNERLEFLGDSVLQLVITE 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF ++    EGELS +   +V   +   +A+ L+L  +I++S            SI AD
Sbjct: 61  YLFMNYKDKSEGELSKKRALIVCENSLFSIAKNLELGEYIKMSKGEELTGGRERISILAD 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEY 175
            VE+LIA++YLD GI+V   F+ K +          +   D KT+LQE       +   Y
Sbjct: 121 AVEALIASIYLDKGIDVVREFILKNFYNIVEKAMKDEIILDYKTKLQEIIQKDGDIQINY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            +    GP H  +F   V+I       G+  SK+ +EQ AA + ++   +
Sbjct: 181 ILIKHEGPPHRRKFYTEVKIKDNVLGYGIGYSKKESEQNAAKKAIENMEV 230


>gi|157825292|ref|YP_001493012.1| ribonuclease III [Rickettsia akari str. Hartford]
 gi|189043339|sp|A8GM79|RNC_RICAH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157799250|gb|ABV74504.1| ribonuclease III [Rickettsia akari str. Hartford]
          Length = 227

 Score =  150 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 117/222 (52%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           + TLEK +GY+F N+ LL +AL+H S+   ++    + YERLEFLGD +L L+++ +LF 
Sbjct: 4   FETLEKLLGYSFKNQELLIEALSHPSLRQHHEYKYDKDYERLEFLGDAVLNLVVTEILFR 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +F S  EG L+   + LV  ET   V  +L L  +I ++            +   + +E+
Sbjct: 64  NFASYNEGNLAKIRSYLVCKETICVVGTKLTLKDYIIMTYGEEVAGGRDNPNNIENAMEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           LIAA+YLD  IE     + K W++          D KT LQEWA A     P Y++  R 
Sbjct: 124 LIAAIYLDSNIETTRNIIGKLWEEFIKIQNLTDYDPKTALQEWAQASSHHLPIYRLIKRE 183

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G  H   FTV+V++       G   S + AE+ AA ++L R 
Sbjct: 184 GAAHSSTFTVLVKVKDYEQ-TGTGHSIKEAEKNAARDLLHRL 224


>gi|157803302|ref|YP_001491851.1| ribonuclease III [Rickettsia canadensis str. McKiel]
 gi|189043341|sp|A8EXI3|RNC_RICCK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157784565|gb|ABV73066.1| ribonuclease III [Rickettsia canadensis str. McKiel]
          Length = 227

 Score =  150 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 117/228 (51%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIS 56
           MS+  ++ LEK +GY+F N+ LL +AL+H S+   +     + YERLEFLGD +L L+I+
Sbjct: 1   MSS--FNELEKLLGYSFKNKELLIEALSHPSLRQHHEYKDNKDYERLEFLGDAVLNLVIT 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +LF++F S  EG L+   + LV  ET   V  +L L  +I ++            +   
Sbjct: 59  KILFSNFASYNEGNLAKIRSYLVCKETICMVGAKLALKDYIIMTYGEEVAGGRDNPNNIE 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +  E+LIAA+YLD  IE     + + W +          D KT LQEWA A     P Y 
Sbjct: 119 NATEALIAAIYLDSNIETTHNIIGQLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYC 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  R G  H   FTV+V++       G+  S + AE+ AA  +L R  
Sbjct: 179 LIKREGAAHSSTFTVLVKVKDYEQ-IGIGYSIKEAEKNAARSLLHRLK 225


>gi|261492470|ref|ZP_05989024.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496943|ref|ZP_05993311.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307467|gb|EEY08802.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311833|gb|EEY12982.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 224

 Score =  150 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY F N   L +ALTH S +    ++ ERLEFLGD IL   I  +L++ F
Sbjct: 1   MQLERLQKKLGYQFHNLDYLIQALTHRSAA---TKNNERLEFLGDSILNFTIGKVLYDKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             + EGELS    +LV  +T + +AR+ DL  ++++     K       SI +D VE++I
Sbjct: 58  PKSNEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGGFRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD  +  A   V+ ++    + +  G  ++D KT LQE+   +    PEY V    
Sbjct: 118 AAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEFLQGRKLPLPEYDVLDIK 177

Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVL 220
           G  H+  F V  ++        G+  S+R AEQ AA + L
Sbjct: 178 GEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKAL 217


>gi|305432452|ref|ZP_07401614.1| ribonuclease III [Campylobacter coli JV20]
 gi|304444491|gb|EFM37142.1| ribonuclease III [Campylobacter coli JV20]
          Length = 225

 Score =  150 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LE+++ Y F ++ LL  ALTH S    Y  + ERLEFLGD +L L++   LF
Sbjct: 1   MMK-NIELLEQKLAYKFKDKDLLIHALTHKSFKKPY--NNERLEFLGDAVLDLVVGEYLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG+LS    +LV+ ++ +++A  L+L  FI +S+    +      SI +D +E
Sbjct: 58  HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A++L+ G + A     K  ++   +       +D KT+LQE   AK G TP+Y+  
Sbjct: 118 AIMGAIHLEAGFDFARNIALKLIEKNFPQIDAKNLIKDYKTKLQEITQAKLGQTPQYETV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDH  +F + + ++G   A+ +  +K+ A+Q+AA   L++ G
Sbjct: 178 RAFGPDHLKQFEIALFLNGQELARAIAGNKKEAQQMAAKITLEKLG 223


>gi|254360744|ref|ZP_04976892.1| ribonuclease III [Mannheimia haemolytica PHL213]
 gi|153091314|gb|EDN73288.1| ribonuclease III [Mannheimia haemolytica PHL213]
          Length = 224

 Score =  150 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY F N   L +ALTH S +    ++ ERLEFLGD IL   I  +L++ F
Sbjct: 1   MQLERLQKKLGYQFHNLDYLIQALTHRSAA---TKNNERLEFLGDSILNFTIGKVLYDKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+ DL  ++++     K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGGFRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD  +  A   V+ ++    + +  G  ++D KT LQE+   +    PEY V    
Sbjct: 118 AAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEFLQGRKLPLPEYDVLDIK 177

Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVL 220
           G  H+  F V  ++        G+  S+R AEQ AA + L
Sbjct: 178 GEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKAL 217


>gi|315634822|ref|ZP_07890104.1| ribonuclease III [Aggregatibacter segnis ATCC 33393]
 gi|315476374|gb|EFU67124.1| ribonuclease III [Aggregatibacter segnis ATCC 33393]
          Length = 226

 Score =  150 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       L+++I Y F + +LL++ALTH S  H      ERLEFLGD IL L I+  LF
Sbjct: 1   MREDNLDRLQRKIDYHFQDVALLKQALTHRSAGH---NHNERLEFLGDAILNLTIAEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+  L  ++ +     K       SI AD VE
Sbjct: 58  HLFPKCNEGELSRMRATLVREPTLAILARDFQLGDYLSLGQGELKSGGFRRESILADCVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD  +  A   V+++++     +K G  ++DAKT LQE+        P Y V 
Sbjct: 118 AIIGAISLDSSLTHATQIVNRWYQTLLENIKPGDNQKDAKTRLQEYLQGNRQPLPTYNVV 177

Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  F V   I        G   S+R AEQ AA ++L+   I
Sbjct: 178 SIQGEAHNQLFIVECSISDNDRTFIGKGSSRRKAEQAAAEQILQELNI 225


>gi|217967335|ref|YP_002352841.1| Ribonuclease III [Dictyoglomus turgidum DSM 6724]
 gi|217336434|gb|ACK42227.1| Ribonuclease III [Dictyoglomus turgidum DSM 6724]
          Length = 238

 Score =  150 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 110/222 (49%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNH 62
              ++++   +F ++ LL +ALTH S  H     ++  +RLEFLGD +L ++I+ +LF  
Sbjct: 15  VERVKEKTRVSFNDKDLLIEALTHPSFKHENPNFKQDNQRLEFLGDAVLNMIITEILFQR 74

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  A EG L+ +   LV  ET  + A+ LDL   I +     K       SI +D+ E+ 
Sbjct: 75  YREASEGFLTQKRIYLVKEETLYKKAKSLDLGELILLGVGEEKQGGRDKISILSDLFEAF 134

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I ALYLD G E    FV++ +K+               L +    K G  P+Y V+   G
Sbjct: 135 IGALYLDKGYEYTKNFVEEIFKEEIES--IEMEVDWKNLLQTYLQKEGKKPQYIVSREVG 192

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           P+HD  F V + I     ++G   +KR AE  AA + L++  
Sbjct: 193 PEHDKTFYVELWIDDEKISEGEGKNKREAEIKAAQKALEKIK 234


>gi|168493169|ref|ZP_02717312.1| ribonuclease III [Streptococcus pneumoniae CDC3059-06]
 gi|183576640|gb|EDT97168.1| ribonuclease III [Streptococcus pneumoniae CDC3059-06]
          Length = 232

 Score =  150 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      F +++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFTDKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +   D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTYLQELLQVNGDVAIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|150016054|ref|YP_001308308.1| ribonuclease III [Clostridium beijerinckii NCIMB 8052]
 gi|189043303|sp|A6LSM2|RNC_CLOB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|149902519|gb|ABR33352.1| Ribonuclease III [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  150 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 4/227 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58
           M+      +E+ +G  F N +LL+ ALTHSS  + +++    ERLEFLGD +L L I+  
Sbjct: 1   MNRYTLKEIEENLGVFFNNHTLLKTALTHSSFGNQFKDAEYNERLEFLGDSVLQLCITEY 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LFN++    EGEL+   + +V   +  ++A++++L S+IR+S            SIQAD 
Sbjct: 61  LFNNYKHKTEGELTKIRSLIVCENSLYEIAKKINLGSYIRMSKGEEITGGRERISIQADA 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           VE++IAA+YLD GI     F+  ++++      + +   D KT+LQE       V  +Y+
Sbjct: 121 VEAIIAAVYLDKGIGFVRDFILLHFEEIINKAINNEIVLDFKTKLQELLQKDGEVVIQYE 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +T   GP H  +F   V I      +G   SK+ AEQ AA + L   
Sbjct: 181 LTKFEGPPHRRKFFTNVVIDKKLMGEGSGYSKKEAEQNAAKQALDIL 227


>gi|81647146|sp|Q6G082|RNC_BARQU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|49239570|emb|CAF25927.1| Ribonuclease III [Bartonella quintana str. Toulouse]
          Length = 235

 Score =  150 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 117/226 (51%), Positives = 153/226 (67%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      LE+   + F +   L+KALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 1   MNCPIIDQLERLTEHHFKDEERLKKALTHSSVQDSEQGNYERLEFLGDRVLGLLIAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +A E+ L   I V  ++R      +T++ ADV+E
Sbjct: 61  KLFPQASEGELSVRLNGLVNAQTCADIALEMGLPDMIHVGFEMRNLKGRRLTNMHADVIE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG++    F+ +YW+ RA +    RRDAKTELQEWAH + GV P Y+V  R
Sbjct: 121 ALIAVMYLDGGLKSVRPFIRRYWQSRAKQMDAGRRDAKTELQEWAHVQGGVQPHYRVVKR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDP F V V I G AP  G   SKR AE++AA +VL+REGIW
Sbjct: 181 SGPDHDPVFMVEVSILGFAPEIGQGNSKRCAERMAAEKVLRREGIW 226


>gi|161761284|ref|YP_032108.2| ribonuclease III [Bartonella quintana str. Toulouse]
          Length = 246

 Score =  150 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 117/226 (51%), Positives = 153/226 (67%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      LE+   + F +   L+KALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 12  MNCPIIDQLERLTEHHFKDEERLKKALTHSSVQDSEQGNYERLEFLGDRVLGLLIAEMLY 71

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +A E+ L   I V  ++R      +T++ ADV+E
Sbjct: 72  KLFPQASEGELSVRLNGLVNAQTCADIALEMGLPDMIHVGFEMRNLKGRRLTNMHADVIE 131

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG++    F+ +YW+ RA +    RRDAKTELQEWAH + GV P Y+V  R
Sbjct: 132 ALIAVMYLDGGLKSVRPFIRRYWQSRAKQMDAGRRDAKTELQEWAHVQGGVQPHYRVVKR 191

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDP F V V I G AP  G   SKR AE++AA +VL+REGIW
Sbjct: 192 SGPDHDPVFMVEVSILGFAPEIGQGNSKRCAERMAAEKVLRREGIW 237


>gi|15615052|ref|NP_243355.1| ribonuclease III [Bacillus halodurans C-125]
 gi|20139354|sp|Q9KA05|RNC_BACHD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|10175109|dbj|BAB06208.1| ribonuclease III [Bacillus halodurans C-125]
          Length = 263

 Score =  150 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +  L + +   FAN+ LL +A THSS  + ++    +  ERLEFLGD +L L +S  L+ 
Sbjct: 35  FDELLRTLNLTFANKKLLVQAFTHSSYVNEHRIQSCKDNERLEFLGDAVLELAVSQYLYK 94

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F+   EG+++    S+V   + +Q+A EL     + +             ++ ADV ES
Sbjct: 95  AFEQMSEGDMTKLRASIVCEPSLAQLAEELHFGELVLLGKGEEMTGGRKRPALLADVFES 154

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            + ALYLD G++    F+++    +  +       D K++LQE+          Y++   
Sbjct: 155 FVGALYLDQGMDAVYLFLERTIYPKISEGAFSHMMDFKSQLQEFIQRDNLGHIHYEIVQE 214

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GP H+  F   V ++      G   SK+ AEQ AA + L   
Sbjct: 215 RGPAHNREFVSEVVLNNETLGVGTGRSKKEAEQHAAQQALITL 257


>gi|126208025|ref|YP_001053250.1| ribonuclease III [Actinobacillus pleuropneumoniae L20]
 gi|189043287|sp|A3MZQ9|RNC_ACTP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|126096817|gb|ABN73645.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 223

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF  F
Sbjct: 1   MQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+  L  ++R+ +   K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRATLVREQTLAILARQFGLGEYMRLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V    
Sbjct: 118 AAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDIK 177

Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 178 GEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 220


>gi|332976630|gb|EGK13471.1| ribonuclease III [Desmospora sp. 8437]
          Length = 231

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTL 58
           +  + L + IG +  N+ L  +A TH+S +H      +Q   ERLEFLGD +L L +S  
Sbjct: 1   MNLAELGQTIGLSLQNKELFLQAFTHTSFAHERKGERHQPDNERLEFLGDAVLELTVSEH 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L++ F   KEG+L+     +V   + +  AR+L+    +R+             ++ ADV
Sbjct: 61  LYHRFPHLKEGDLTRMRARIVCEPSLASFARDLNFGKHVRLGKGEELTGGRNRPALLADV 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ I ALYL+ G++    F+++    R          DAK+ LQE    +   +  Y++
Sbjct: 121 FEAFIGALYLEKGLDGVIDFMNRVILPRIDDQWLAQGSDAKSRLQEAVQQEHLGSLVYQI 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               GP HD +F   V +SG     G   SK+ AEQ AAAE L+R
Sbjct: 181 VDVQGPAHDRQFVAEVWLSGEKLGTGAGRSKKEAEQQAAAEGLQR 225


>gi|118444155|ref|YP_878292.1| ribonuclease III [Clostridium novyi NT]
 gi|118134611|gb|ABK61655.1| ribonuclease III [Clostridium novyi NT]
          Length = 237

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 116/230 (50%), Gaps = 7/230 (3%)

Query: 1   MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLI 55
           M   R    + +E ++   F + ++L+ ALTHSS  +  +   S ERLEFLGD IL L I
Sbjct: 1   MKKNRNIILNEVENKLKVKFNDINILDTALTHSSFINENKNINSNERLEFLGDSILQLCI 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S LL+N ++   EG L+ +   +V   +  +VA++ ++  +I +S            SI 
Sbjct: 61  SELLYNKYNDEPEGFLTKKRALIVCGNSLHEVAKKWNIGKYINMSKGEEMTGGRTRISIL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTP 173
           +D VE++IA++YLD G EVA  F+ + + +      S +   D KT+LQE          
Sbjct: 121 SDCVEAIIASIYLDQGYEVAKNFIIENFNEIIQKAHSNEIILDYKTKLQETIQKFGEYNI 180

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           EY +    GP H  +F   V I  L    G   SK+ +EQ AA E LK  
Sbjct: 181 EYTLVSFEGPPHRRKFVTEVSIDSLVKGVGEGYSKKESEQNAAKEALKGL 230


>gi|306845262|ref|ZP_07477838.1| ribonuclease III [Brucella sp. BO1]
 gi|306274421|gb|EFM56228.1| ribonuclease III [Brucella sp. BO1]
          Length = 257

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 118/218 (54%), Positives = 155/218 (71%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+R G+ F N   LE+ALTHSS+    + +YERLEFLGDR+LGL ++ +LF  F  A E
Sbjct: 34  LEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEASE 93

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELSVR N+LV+AETC+ +A E+ LA  I   SD++      + +++ADVVE+LIA +YL
Sbjct: 94  GELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATIYL 153

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG+E A +F+ +YWK+R+L++G  RRDAKTELQEWAH +  V P Y +  RSGPDHDP 
Sbjct: 154 DGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHDPL 213

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           F V V + G AP +G   SKR AEQ AA  +L REG+W
Sbjct: 214 FLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 251


>gi|237815116|ref|ZP_04594114.1| ribonuclease III [Brucella abortus str. 2308 A]
 gi|260545623|ref|ZP_05821364.1| ribonuclease III [Brucella abortus NCTC 8038]
 gi|260563710|ref|ZP_05834196.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M]
 gi|260566758|ref|ZP_05837228.1| ribonuclease III family protein [Brucella suis bv. 4 str. 40]
 gi|260754424|ref|ZP_05866772.1| ribonuclease III [Brucella abortus bv. 6 str. 870]
 gi|260757643|ref|ZP_05869991.1| ribonuclease III [Brucella abortus bv. 4 str. 292]
 gi|260761470|ref|ZP_05873813.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59]
 gi|261213670|ref|ZP_05927951.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya]
 gi|261218969|ref|ZP_05933250.1| ribonuclease III [Brucella ceti M13/05/1]
 gi|261315123|ref|ZP_05954320.1| ribonuclease III [Brucella pinnipedialis M163/99/10]
 gi|261317321|ref|ZP_05956518.1| ribonuclease III [Brucella pinnipedialis B2/94]
 gi|261321532|ref|ZP_05960729.1| ribonuclease III [Brucella ceti M644/93/1]
 gi|261751989|ref|ZP_05995698.1| ribonuclease III [Brucella suis bv. 5 str. 513]
 gi|261754648|ref|ZP_05998357.1| ribonuclease III [Brucella suis bv. 3 str. 686]
 gi|261757876|ref|ZP_06001585.1| ribonuclease III family [Brucella sp. F5/99]
 gi|265983784|ref|ZP_06096519.1| ribonuclease III [Brucella sp. 83/13]
 gi|294852025|ref|ZP_06792698.1| ribonuclease III [Brucella sp. NVSL 07-0026]
 gi|297248033|ref|ZP_06931751.1| ribonuclease III [Brucella abortus bv. 5 str. B3196]
 gi|237789953|gb|EEP64163.1| ribonuclease III [Brucella abortus str. 2308 A]
 gi|260097030|gb|EEW80905.1| ribonuclease III [Brucella abortus NCTC 8038]
 gi|260153726|gb|EEW88818.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M]
 gi|260156276|gb|EEW91356.1| ribonuclease III family protein [Brucella suis bv. 4 str. 40]
 gi|260667961|gb|EEX54901.1| ribonuclease III [Brucella abortus bv. 4 str. 292]
 gi|260671902|gb|EEX58723.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674532|gb|EEX61353.1| ribonuclease III [Brucella abortus bv. 6 str. 870]
 gi|260915277|gb|EEX82138.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya]
 gi|260924058|gb|EEX90626.1| ribonuclease III [Brucella ceti M13/05/1]
 gi|261294222|gb|EEX97718.1| ribonuclease III [Brucella ceti M644/93/1]
 gi|261296544|gb|EEY00041.1| ribonuclease III [Brucella pinnipedialis B2/94]
 gi|261304149|gb|EEY07646.1| ribonuclease III [Brucella pinnipedialis M163/99/10]
 gi|261737860|gb|EEY25856.1| ribonuclease III family [Brucella sp. F5/99]
 gi|261741742|gb|EEY29668.1| ribonuclease III [Brucella suis bv. 5 str. 513]
 gi|261744401|gb|EEY32327.1| ribonuclease III [Brucella suis bv. 3 str. 686]
 gi|264662376|gb|EEZ32637.1| ribonuclease III [Brucella sp. 83/13]
 gi|294820614|gb|EFG37613.1| ribonuclease III [Brucella sp. NVSL 07-0026]
 gi|297175202|gb|EFH34549.1| ribonuclease III [Brucella abortus bv. 5 str. B3196]
 gi|326408683|gb|ADZ65748.1| Ribonuclease III family [Brucella melitensis M28]
 gi|326538408|gb|ADZ86623.1| ribonuclease III [Brucella melitensis M5-90]
          Length = 234

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 118/218 (54%), Positives = 155/218 (71%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+R G+ F N   LE+ALTHSS+    + +YERLEFLGDR+LGL ++ +LF  F  A E
Sbjct: 11  LEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEASE 70

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELSVR N+LV+AETC+ +A E+ LA  I   SD++      + +++ADVVE+LIA +YL
Sbjct: 71  GELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATIYL 130

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG+E A +F+ +YWK+R+L++G  RRDAKTELQEWAH +  V P Y +  RSGPDHDP 
Sbjct: 131 DGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHDPL 190

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           F V V + G AP +G   SKR AEQ AA  +L REG+W
Sbjct: 191 FLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 228


>gi|148560325|ref|YP_001258645.1| ribonuclease III [Brucella ovis ATCC 25840]
 gi|306837522|ref|ZP_07470397.1| ribonuclease III [Brucella sp. NF 2653]
 gi|306842074|ref|ZP_07474746.1| ribonuclease III [Brucella sp. BO2]
 gi|148371582|gb|ABQ61561.1| ribonuclease III [Brucella ovis ATCC 25840]
 gi|306287824|gb|EFM59247.1| ribonuclease III [Brucella sp. BO2]
 gi|306407414|gb|EFM63618.1| ribonuclease III [Brucella sp. NF 2653]
          Length = 257

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 118/218 (54%), Positives = 155/218 (71%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+R G+ F N   LE+ALTHSS+    + +YERLEFLGDR+LGL ++ +LF  F  A E
Sbjct: 34  LEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEASE 93

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELSVR N+LV+AETC+ +A E+ LA  I   SD++      + +++ADVVE+LIA +YL
Sbjct: 94  GELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATIYL 153

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG+E A +F+ +YWK+R+L++G  RRDAKTELQEWAH +  V P Y +  RSGPDHDP 
Sbjct: 154 DGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHDPL 213

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           F V V + G AP +G   SKR AEQ AA  +L REG+W
Sbjct: 214 FLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 251


>gi|148993857|ref|ZP_01823259.1| ribonuclease III [Streptococcus pneumoniae SP9-BS68]
 gi|149007089|ref|ZP_01830758.1| ribonuclease III [Streptococcus pneumoniae SP18-BS74]
 gi|149012300|ref|ZP_01833369.1| ribonuclease III [Streptococcus pneumoniae SP19-BS75]
 gi|149019239|ref|ZP_01834601.1| ribonuclease III [Streptococcus pneumoniae SP23-BS72]
 gi|168486568|ref|ZP_02711076.1| ribonuclease III [Streptococcus pneumoniae CDC1087-00]
 gi|168489075|ref|ZP_02713274.1| ribonuclease III [Streptococcus pneumoniae SP195]
 gi|182684025|ref|YP_001835772.1| ribonuclease III [Streptococcus pneumoniae CGSP14]
 gi|225854713|ref|YP_002736225.1| ribonuclease III [Streptococcus pneumoniae JJA]
 gi|225859042|ref|YP_002740552.1| ribonuclease III [Streptococcus pneumoniae 70585]
 gi|303254257|ref|ZP_07340366.1| ribonuclease III [Streptococcus pneumoniae BS455]
 gi|303258883|ref|ZP_07344862.1| ribonuclease III [Streptococcus pneumoniae SP-BS293]
 gi|303261566|ref|ZP_07347513.1| ribonuclease III [Streptococcus pneumoniae SP14-BS292]
 gi|303264237|ref|ZP_07350157.1| ribonuclease III [Streptococcus pneumoniae BS397]
 gi|303266132|ref|ZP_07352025.1| ribonuclease III [Streptococcus pneumoniae BS457]
 gi|303268141|ref|ZP_07353941.1| ribonuclease III [Streptococcus pneumoniae BS458]
 gi|307127162|ref|YP_003879193.1| ribonuclease III [Streptococcus pneumoniae 670-6B]
 gi|238691158|sp|B2IPN5|RNC_STRPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807901|sp|C1C7M6|RNC_STRP7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807904|sp|C1CEK4|RNC_STRZJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|147761393|gb|EDK68359.1| ribonuclease III [Streptococcus pneumoniae SP18-BS74]
 gi|147763626|gb|EDK70561.1| ribonuclease III [Streptococcus pneumoniae SP19-BS75]
 gi|147927682|gb|EDK78707.1| ribonuclease III [Streptococcus pneumoniae SP9-BS68]
 gi|147931109|gb|EDK82088.1| ribonuclease III [Streptococcus pneumoniae SP23-BS72]
 gi|182629359|gb|ACB90307.1| ribonuclease III [Streptococcus pneumoniae CGSP14]
 gi|183570477|gb|EDT91005.1| ribonuclease III [Streptococcus pneumoniae CDC1087-00]
 gi|183572564|gb|EDT93092.1| ribonuclease III [Streptococcus pneumoniae SP195]
 gi|225722013|gb|ACO17867.1| ribonuclease III [Streptococcus pneumoniae 70585]
 gi|225722854|gb|ACO18707.1| ribonuclease III [Streptococcus pneumoniae JJA]
 gi|301801897|emb|CBW34621.1| ribonuclease III [Streptococcus pneumoniae INV200]
 gi|302598751|gb|EFL65788.1| ribonuclease III [Streptococcus pneumoniae BS455]
 gi|302637146|gb|EFL67634.1| ribonuclease III [Streptococcus pneumoniae SP14-BS292]
 gi|302639826|gb|EFL70282.1| ribonuclease III [Streptococcus pneumoniae SP-BS293]
 gi|302642358|gb|EFL72705.1| ribonuclease III [Streptococcus pneumoniae BS458]
 gi|302644302|gb|EFL74556.1| ribonuclease III [Streptococcus pneumoniae BS457]
 gi|302646049|gb|EFL76276.1| ribonuclease III [Streptococcus pneumoniae BS397]
 gi|306484224|gb|ADM91093.1| ribonuclease III [Streptococcus pneumoniae 670-6B]
 gi|332073586|gb|EGI84065.1| ribonuclease III [Streptococcus pneumoniae GA17570]
 gi|332074581|gb|EGI85055.1| ribonuclease III [Streptococcus pneumoniae GA17545]
          Length = 232

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      F ++ LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFTDKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +   D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|17987570|ref|NP_540204.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M]
 gi|23501548|ref|NP_697675.1| ribonuclease III [Brucella suis 1330]
 gi|62289621|ref|YP_221414.1| ribonuclease III [Brucella abortus bv. 1 str. 9-941]
 gi|82699549|ref|YP_414123.1| ribonuclease III [Brucella melitensis biovar Abortus 2308]
 gi|161618631|ref|YP_001592518.1| ribonuclease III [Brucella canis ATCC 23365]
 gi|163842933|ref|YP_001627337.1| ribonuclease III [Brucella suis ATCC 23445]
 gi|189023875|ref|YP_001934643.1| ribonuclease III [Brucella abortus S19]
 gi|225852182|ref|YP_002732415.1| ribonuclease III [Brucella melitensis ATCC 23457]
 gi|254688937|ref|ZP_05152191.1| ribonuclease III [Brucella abortus bv. 6 str. 870]
 gi|254693419|ref|ZP_05155247.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya]
 gi|254697072|ref|ZP_05158900.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701449|ref|ZP_05163277.1| ribonuclease III [Brucella suis bv. 5 str. 513]
 gi|254703995|ref|ZP_05165823.1| ribonuclease III [Brucella suis bv. 3 str. 686]
 gi|254707631|ref|ZP_05169459.1| ribonuclease III [Brucella pinnipedialis M163/99/10]
 gi|254709787|ref|ZP_05171598.1| ribonuclease III [Brucella pinnipedialis B2/94]
 gi|254713789|ref|ZP_05175600.1| ribonuclease III [Brucella ceti M644/93/1]
 gi|254717154|ref|ZP_05178965.1| ribonuclease III [Brucella ceti M13/05/1]
 gi|254718802|ref|ZP_05180613.1| ribonuclease III [Brucella sp. 83/13]
 gi|254729968|ref|ZP_05188546.1| ribonuclease III [Brucella abortus bv. 4 str. 292]
 gi|256031277|ref|ZP_05444891.1| ribonuclease III [Brucella pinnipedialis M292/94/1]
 gi|256044358|ref|ZP_05447262.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060789|ref|ZP_05450951.1| ribonuclease III [Brucella neotomae 5K33]
 gi|256113201|ref|ZP_05454069.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether]
 gi|256159387|ref|ZP_05457169.1| ribonuclease III [Brucella ceti M490/95/1]
 gi|256254685|ref|ZP_05460221.1| ribonuclease III [Brucella ceti B1/94]
 gi|256257185|ref|ZP_05462721.1| ribonuclease III [Brucella abortus bv. 9 str. C68]
 gi|256264307|ref|ZP_05466839.1| ribonuclease III family protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369099|ref|YP_003106607.1| ribonuclease III [Brucella microti CCM 4915]
 gi|260168415|ref|ZP_05755226.1| ribonuclease III [Brucella sp. F5/99]
 gi|260883452|ref|ZP_05895066.1| ribonuclease III [Brucella abortus bv. 9 str. C68]
 gi|261221863|ref|ZP_05936144.1| ribonuclease III [Brucella ceti B1/94]
 gi|261324780|ref|ZP_05963977.1| ribonuclease III [Brucella neotomae 5K33]
 gi|265988360|ref|ZP_06100917.1| ribonuclease III [Brucella pinnipedialis M292/94/1]
 gi|265990773|ref|ZP_06103330.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994609|ref|ZP_06107166.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether]
 gi|265997827|ref|ZP_06110384.1| ribonuclease III [Brucella ceti M490/95/1]
 gi|54039241|sp|P66665|RNC_BRUSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54041613|sp|P66664|RNC_BRUME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|75497081|sp|Q57E81|RNC_BRUAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101615|sp|Q2YN02|RNC_BRUA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043295|sp|A9MA35|RNC_BRUC2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043296|sp|B0CKY7|RNC_BRUSI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238691497|sp|B2SAD9|RNC_BRUA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807239|sp|C0RI03|RNC_BRUMB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|17983275|gb|AAL52468.1| ribonuclease iii [Brucella melitensis bv. 1 str. 16M]
 gi|23347459|gb|AAN29590.1| ribonuclease III [Brucella suis 1330]
 gi|62195753|gb|AAX74053.1| ribonuclease III [Brucella abortus bv. 1 str. 9-941]
 gi|82615650|emb|CAJ10637.1| Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain
           [Brucella melitensis biovar Abortus 2308]
 gi|161335442|gb|ABX61747.1| ribonuclease III [Brucella canis ATCC 23365]
 gi|163673656|gb|ABY37767.1| ribonuclease III [Brucella suis ATCC 23445]
 gi|189019447|gb|ACD72169.1| Ribonuclease III family [Brucella abortus S19]
 gi|225640547|gb|ACO00461.1| ribonuclease III [Brucella melitensis ATCC 23457]
 gi|255999259|gb|ACU47658.1| ribonuclease III [Brucella microti CCM 4915]
 gi|260872980|gb|EEX80049.1| ribonuclease III [Brucella abortus bv. 9 str. C68]
 gi|260920447|gb|EEX87100.1| ribonuclease III [Brucella ceti B1/94]
 gi|261300760|gb|EEY04257.1| ribonuclease III [Brucella neotomae 5K33]
 gi|262552295|gb|EEZ08285.1| ribonuclease III [Brucella ceti M490/95/1]
 gi|262765722|gb|EEZ11511.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether]
 gi|263001557|gb|EEZ14132.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094580|gb|EEZ18378.1| ribonuclease III family protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264660557|gb|EEZ30818.1| ribonuclease III [Brucella pinnipedialis M292/94/1]
          Length = 245

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 118/218 (54%), Positives = 155/218 (71%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+R G+ F N   LE+ALTHSS+    + +YERLEFLGDR+LGL ++ +LF  F  A E
Sbjct: 22  LEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEASE 81

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELSVR N+LV+AETC+ +A E+ LA  I   SD++      + +++ADVVE+LIA +YL
Sbjct: 82  GELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATIYL 141

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG+E A +F+ +YWK+R+L++G  RRDAKTELQEWAH +  V P Y +  RSGPDHDP 
Sbjct: 142 DGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHDPL 201

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           F V V + G AP +G   SKR AEQ AA  +L REG+W
Sbjct: 202 FLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 239


>gi|157150981|ref|YP_001450082.1| ribonuclease III [Streptococcus gordonii str. Challis substr. CH1]
 gi|189043362|sp|A8AWC2|RNC_STRGC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157075775|gb|ABV10458.1| Ribonuclease III (RNase III) [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 232

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 112/229 (48%), Gaps = 6/229 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L  + L  R G  F + SLLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MKKLE-NLLFDRFGLVFKDVSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+L+   +++V  E+ +  +R+     FI++     K       +I  
Sbjct: 60  EYLFEKYPKRPEGDLTKLRSTIVREESLAGFSRDCQFDRFIKLGKGEEKSGGRERETILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD G+EV   F+ +    +      +   D KT+LQE   +   V   Y
Sbjct: 120 DLFEAFLGALLLDKGLEVVKNFIYQVMIPKVEAGDFEQVTDYKTKLQELLQSNGDVEILY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +V   SGP H   F V V + G    +G   SK+ AEQ AA    ++E 
Sbjct: 180 QVVSESGPAHAKNFEVSVSVDGRLVGKGQGRSKKLAEQEAAKNAFEKEN 228


>gi|167755900|ref|ZP_02428027.1| hypothetical protein CLORAM_01417 [Clostridium ramosum DSM 1402]
 gi|237734864|ref|ZP_04565345.1| ribonuclease III [Mollicutes bacterium D7]
 gi|167704839|gb|EDS19418.1| hypothetical protein CLORAM_01417 [Clostridium ramosum DSM 1402]
 gi|229382192|gb|EEO32283.1| ribonuclease III [Coprobacillus sp. D7]
          Length = 226

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 4/224 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60
           +      +++   + N  + ++A TH S ++  +     YERLEFLGD +L   +S  +F
Sbjct: 1   MELEQFLQKMEIPYQNIEIFKEAFTHPSYANENKMKNHDYERLEFLGDAVLQYHVSRHIF 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + +    EG L+     LV  E+ ++ ARELDL   I + +    +      S+ AD+ E
Sbjct: 61  DLYPELPEGRLTKLRAKLVREESLARFARELDLGPLIYLGAGELNNGGRDRDSVLADIFE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + + A+  D G E     +D    +     +     D KT+LQE   A    T  Y +  
Sbjct: 121 AFMGAICHDCGPEYVEKMLDITIYKHVEDVNYDEITDFKTKLQELIQADQRKTVTYDLIS 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            SGP ++P F + V++  +    G+  SK+ AEQ AA + L + 
Sbjct: 181 SSGPSNNPVFEMAVKMDEMVLGVGVGSSKKRAEQQAAKDALNKL 224


>gi|237737605|ref|ZP_04568086.1| ribonuclease III [Fusobacterium mortiferum ATCC 9817]
 gi|229419485|gb|EEO34532.1| ribonuclease III [Fusobacterium mortiferum ATCC 9817]
          Length = 240

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 121/235 (51%), Gaps = 11/235 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M    Y   EK +GY+F N+ LL+ +L H S  + ++     S ERLE LGD +L L+++
Sbjct: 1   MKR-NYLDFEKNLGYSFKNKELLKNSLIHRSFGNEHRRYKKISNERLELLGDAVLDLVVT 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  + ++ EG+L+   + +VS    + ++++L++  ++ +S           +SI  
Sbjct: 60  EYLYKSYANSTEGDLAKVKSMVVSEPVLAGISKKLEVGKYLLLSRGEELTGGRERSSILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           D  E+++ A+Y+D   E A  FV  + K     + S +   D KT LQE++   + V PE
Sbjct: 120 DAFEAILGAIYMDSNFETAKEFVLTHIKDSIDHVDSNEEILDFKTILQEYSQKNYRVIPE 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           Y V    GPDH   F + V+I          +G   +K+ AEQ AA  + K+ G+
Sbjct: 180 YSVINEIGPDHQKIFEIEVKIDNGIDEEKSDRGTGKNKKTAEQAAAKSLCKKLGV 234


>gi|88608789|ref|YP_506782.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama]
 gi|88600958|gb|ABD46426.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama]
          Length = 222

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L+  +G  F N+ LL +ALTH S+      SYERLEFLGD +L L+I+++L++ F
Sbjct: 1   MELEELQSLLGVYFKNKDLLVEALTHPSV--EKCPSYERLEFLGDAVLNLVIASMLYDLF 58

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG LS R ++L+   T + +AR+++L  +IR+SS          TS   +V+E+L+
Sbjct: 59  PGDPEGRLSHRQSALICKNTLAMLARQMNLGDYIRLSSSEEAGGGRDKTSNLENVLEALV 118

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++LD G+E    F+ K W   A++S     + K+ LQE   AK    P Y V  RSGP
Sbjct: 119 GAIFLDAGLETVTCFIKKRWYGLAVQSDSIEPNPKSTLQELLQAKGMKPPIYNVINRSGP 178

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
            H P F + + + G    +    SK+  E+ AA  +L+     T
Sbjct: 179 AHLPIFEIEIRVDGKKR-RATGKSKKLGEENAARMMLEELKAET 221


>gi|322376803|ref|ZP_08051296.1| ribonuclease III [Streptococcus sp. M334]
 gi|321282610|gb|EFX59617.1| ribonuclease III [Streptococcus sp. M334]
          Length = 232

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +   D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVAKVKKFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|254463926|ref|ZP_05077337.1| ribonuclease III [Rhodobacterales bacterium Y4I]
 gi|206684834|gb|EDZ45316.1| ribonuclease III [Rhodobacterales bacterium Y4I]
          Length = 225

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 90/225 (40%), Positives = 132/225 (58%), Gaps = 1/225 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +      E+RIG+ FA   LL++A+TH+S+S S ++  +RLEFLGDR+LGL+++T L
Sbjct: 1   MKLSKELRAFEERIGHKFARPELLQRAVTHASVSSSNRKDNQRLEFLGDRVLGLVMATAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
             H  +A EG+L+ RFN+LV  E C+ VA+E+DL + +++             ++  D +
Sbjct: 61  LEHDKTATEGQLAPRFNALVRKEACADVAKEIDLGAVLKLGRSEMMSGGRRKQALLGDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+Y D G + A   + + W  R  +     RDAKT LQEWA A+    P Y    
Sbjct: 121 EAVIAAVYKDAGFDAAAEMILRLWGTRIHQVETDARDAKTSLQEWAQARGQQVPIYVEVS 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           RSGPDH P FT+   +     AQ    SKR AEQ AA  +L++ G
Sbjct: 181 RSGPDHAPVFTIAARLQDGTEAQATAGSKRQAEQAAAKALLEQLG 225


>gi|256544903|ref|ZP_05472274.1| ribonuclease III [Anaerococcus vaginalis ATCC 51170]
 gi|256399402|gb|EEU13008.1| ribonuclease III [Anaerococcus vaginalis ATCC 51170]
          Length = 238

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 116/225 (51%), Gaps = 7/225 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFN 61
              LE+ IGY F N++L++ ALTHSS  +      + S ERLEFLGD IL L++S  L+ 
Sbjct: 11  IEKLEESIGYTFKNKNLIDVALTHSSYINESKDENKSSNERLEFLGDSILDLIVSEELYK 70

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +  +  EG+L+   + +V   + S+ + + +L+S++               S++AD  E+
Sbjct: 71  NHKTYPEGKLTKIRSRIVCTSSFSKASEKFNLSSYLLFGKGEESHNGREKKSVKADTFEA 130

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
             AA+YLD G +    F+ K + +   +  +      D KT+LQE+ +    +  +YK+ 
Sbjct: 131 FCAAIYLDAGYDFLKDFLMKNYYEIVKELLENDLLFIDYKTKLQEYFNKTNRIILKYKLV 190

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP+H+  F + V       + G   +K+ AEQ+AA    K+ 
Sbjct: 191 KEEGPEHNKTFYMEVSAKNKKLSTGKGKNKKEAEQMAARIAYKKL 235


>gi|149374709|ref|ZP_01892483.1| ribonuclease III [Marinobacter algicola DG893]
 gi|149361412|gb|EDM49862.1| ribonuclease III [Marinobacter algicola DG893]
          Length = 229

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 113/229 (49%), Gaps = 7/229 (3%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           MS+      L++RIGY F     L  ALTH S  +   ++ ERLEFLGD I+ ++I+  L
Sbjct: 1   MSSQPDLEQLQRRIGYQFKTPERLLLALTHRSFGN---QNNERLEFLGDSIVNMVIAEYL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + HF+ A+EG+LS     +V   T +++ RE +L  ++R+ S   K       SI AD V
Sbjct: 58  YLHFEKAREGQLSRLRARMVKGVTLAEIGREFELGKYLRLGSGEMKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ES+I A+YLD                + + L     ++D KT LQE+  ++    P Y V
Sbjct: 118 ESIIGAIYLDSDFHTCREQVLRWFEVRLQKLDLQDTQKDPKTRLQEYLQSRQFPLPRYDV 177

Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
               G  H   F V   +  L     G   S+R AEQ AA   LK+ G+
Sbjct: 178 ISVDGEAHAQTFHVSCALPSLDRKTTGTGNSRRIAEQQAARNALKQLGV 226


>gi|169833544|ref|YP_001694678.1| ribonuclease III [Streptococcus pneumoniae Hungary19A-6]
 gi|221231942|ref|YP_002511094.1| ribonuclease III [Streptococcus pneumoniae ATCC 700669]
 gi|307706718|ref|ZP_07643523.1| ribonuclease III [Streptococcus mitis SK321]
 gi|307709493|ref|ZP_07645950.1| ribonuclease III [Streptococcus mitis SK564]
 gi|238688328|sp|B1IC43|RNC_STRPI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807902|sp|B8ZJR8|RNC_STRPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|168996046|gb|ACA36658.1| ribonuclease III [Streptococcus pneumoniae Hungary19A-6]
 gi|220674402|emb|CAR68952.1| ribonuclease III [Streptococcus pneumoniae ATCC 700669]
 gi|301794330|emb|CBW36755.1| ribonuclease III [Streptococcus pneumoniae INV104]
 gi|301800168|emb|CBW32773.1| ribonuclease III [Streptococcus pneumoniae OXC141]
 gi|307617803|gb|EFN96965.1| ribonuclease III [Streptococcus mitis SK321]
 gi|307619807|gb|EFN98926.1| ribonuclease III [Streptococcus mitis SK564]
 gi|332203096|gb|EGJ17164.1| ribonuclease III [Streptococcus pneumoniae GA47901]
          Length = 232

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +   D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|125973448|ref|YP_001037358.1| ribonuclease III [Clostridium thermocellum ATCC 27405]
 gi|256005344|ref|ZP_05430309.1| ribonuclease III [Clostridium thermocellum DSM 2360]
 gi|281417648|ref|ZP_06248668.1| ribonuclease III [Clostridium thermocellum JW20]
 gi|125713673|gb|ABN52165.1| RNAse III [Clostridium thermocellum ATCC 27405]
 gi|255990663|gb|EEU00780.1| ribonuclease III [Clostridium thermocellum DSM 2360]
 gi|281409050|gb|EFB39308.1| ribonuclease III [Clostridium thermocellum JW20]
 gi|316940315|gb|ADU74349.1| ribonuclease III [Clostridium thermocellum DSM 1313]
          Length = 236

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 113/225 (50%), Gaps = 6/225 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
            + LE+ I Y F ++  L  ALTHSS ++  ++    S ERLEFLGD +L +++S  ++ 
Sbjct: 11  INELERVIDYCFEDKMKLVLALTHSSYANECRDERITSNERLEFLGDTVLNMVVSEYIYK 70

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     EGE++    ++V   T ++ A+ L +  ++ +             SI +D VE+
Sbjct: 71  NCSYLAEGEMTKFRANVVCERTLAECAQNLSIGKYLLLGKGEENTGGRTRVSILSDAVEA 130

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+Y+DGG+E A TF+    ++   KS +     D KT+LQE           Y++  
Sbjct: 131 LIGAIYIDGGLESARTFILNQLEKTIEKSIQGTIFMDYKTQLQEIIQKTNEHKIAYEIIE 190

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GPDH   F   V++       G   +K+ AEQ+AA   L+   
Sbjct: 191 EKGPDHSKVFVAQVKVDEKVVGVGEGRTKKEAEQMAAKSSLENIN 235


>gi|262282633|ref|ZP_06060401.1| ribonuclease III [Streptococcus sp. 2_1_36FAA]
 gi|262261924|gb|EEY80622.1| ribonuclease III [Streptococcus sp. 2_1_36FAA]
          Length = 232

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 112/229 (48%), Gaps = 6/229 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L  + L  R G  F + SLLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MKKLE-NLLFDRFGLVFKDVSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+L+   +++V  E+ +  +R+     FI++     K       +I  
Sbjct: 60  EYLFEKYPKRPEGDLTKLRSTIVREESLAGFSRDCQFDLFIKLGKGEEKSGGRERETILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD G+E+   F+ +    +      +   D KT+LQE   +   V   Y
Sbjct: 120 DLFEAFLGALLLDKGLEIVKDFIYQVMIPKVEAGDFEQVTDYKTKLQELLQSNGDVEILY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +V   SGP H   F V V + G    +G   SK+ AEQ AA    ++E 
Sbjct: 180 QVVSESGPAHAKNFEVSVSVDGRLVGKGQGRSKKLAEQEAAKNAFEKEN 228


>gi|261416404|ref|YP_003250087.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372860|gb|ACX75605.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326232|gb|ADL25433.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 270

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 6/221 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           LE ++GY F +  LL  AL H S        Y  + ERLEFLGD +L +L +  L+  + 
Sbjct: 23  LEAKLGYRFRDPELLAHALVHRSFLVGKDVPYASNNERLEFLGDSVLNMLTTEFLYRTYP 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           S  EGELS R +++VS   C+Q ++E DL+ ++++     K       SI AD  E+++ 
Sbjct: 83  SDPEGELSKRKSAIVSGHACAQSSKEWDLSEYVKIGKSEAKMGGRGKESILADAYEAVLG 142

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLDGG+E     ++K+   R  +        + K+EL E+   K   +PEY +    G
Sbjct: 143 AVYLDGGLEEVRAILNKFHFPRVQEIISATDFVNYKSELLEFCQGKLRCSPEYVIVGEEG 202

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P+H   FTV V ++G + A+G   +K+ AEQ A+   L+  
Sbjct: 203 PEHQKVFTVEVVVNGKSYARGQGPNKKKAEQEASRLSLETL 243


>gi|239831496|ref|ZP_04679825.1| ribonuclease III [Ochrobactrum intermedium LMG 3301]
 gi|239823763|gb|EEQ95331.1| ribonuclease III [Ochrobactrum intermedium LMG 3301]
          Length = 234

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 113/228 (49%), Positives = 156/228 (68%), Gaps = 2/228 (0%)

Query: 1   MSALRYST--LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           M++   +   LE+R G+ F N   L++ALTHSS+    + +YERLEFLGDR+LGL ++ +
Sbjct: 1   MASANQAAAILEERTGHRFLNVKRLDRALTHSSVQAPSRANYERLEFLGDRVLGLTVAEM 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L++ F  A EGELSVR N+LV+AETC+ +A E+ LA  I   SD++      + +++ADV
Sbjct: 61  LYDEFPEASEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADV 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           VE+LIA +YLDGG++    FV ++WK+R+L++G  RRDAKTELQEWAH +  V P Y + 
Sbjct: 121 VEALIATIYLDGGLDAVRPFVKRFWKKRSLQTGAARRDAKTELQEWAHQQGNVHPAYSII 180

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            R+GPDHDP F V V + G A   G   SKR AEQ AA  +L REG+W
Sbjct: 181 SRTGPDHDPLFMVEVTVKGFAAETGEGRSKRIAEQHAAEAMLYREGVW 228


>gi|68171854|ref|ZP_00545186.1| Ribonuclease III [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658070|ref|YP_507839.1| ribonuclease III [Ehrlichia chaffeensis str. Arkansas]
 gi|123492713|sp|Q2GFE4|RNC_EHRCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|67998723|gb|EAM85443.1| Ribonuclease III [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599527|gb|ABD44996.1| ribonuclease III [Ehrlichia chaffeensis str. Arkansas]
          Length = 226

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 82/220 (37%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHF 63
             ++ K I Y F N  LL +ALTH S+    + + +YERLEFLGD +L ++IS +LFN F
Sbjct: 2   IESISKIIKYNFKNPQLLNEALTHPSLVSKDTLKFNYERLEFLGDAVLNIVISEMLFNIF 61

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+ +  +LV      +VA+ ++L  FI +S   R            + +E+LI
Sbjct: 62  PKDTEGNLAKKKTALVCGNKLVEVAQSINLGQFIMMSDGERACGGINNFRNLENALEALI 121

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG   A  F+  +W+  A       +DAKT LQE    K    P Y    +SGP
Sbjct: 122 GAIYLDGGFTAAQDFIYLFWEHSATHMNVPPQDAKTILQELVQGKRLPAPAYHTIDKSGP 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH+P FTV V I      Q    +K+ AEQ AA+ +L + 
Sbjct: 182 DHNPTFTVEVRIPSYQAIQATGHNKKLAEQKAASLMLNQI 221


>gi|295094866|emb|CBK83957.1| RNAse III [Coprococcus sp. ART55/1]
          Length = 229

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 115/227 (50%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M    Y  LEKRIGY F +  LL  ALTH+S ++  +    ESYERLEFLGD IL  ++S
Sbjct: 1   MKK-DYGELEKRIGYEFKDIRLLITALTHTSFANELKVNKTESYERLEFLGDAILEYIVS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF      +EG+L+    SLV   T SQ++  L    F+ +S    +       SI  
Sbjct: 60  DYLFRKKREYEEGKLTKLRASLVCEFTLSQISESLGYGKFVLLSKGEAQTGGRTRKSILC 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D+ ES++ A+YLDGG++VA  FV ++          F         +    K G   +Y+
Sbjct: 120 DLFESVLGAMYLDGGMDVAKKFVHQFLLDDVETKSLFYD--AKSTLQEFCQKNGKELKYE 177

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GP+H+  F     I G A A+G   +++ +EQ+AA + L + 
Sbjct: 178 LIEEKGPEHNKIFVSDALIDGQATARGEGSNRKNSEQMAAYKTLLQL 224


>gi|257870561|ref|ZP_05650214.1| ribonuclease III [Enterococcus gallinarum EG2]
 gi|257804725|gb|EEV33547.1| ribonuclease III [Enterococcus gallinarum EG2]
          Length = 230

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 103/228 (45%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M+    + L++  G  F +  LLE+A THSS  + ++       ERLEFLGD +L L++S
Sbjct: 1   MNTQLMNELKEDYGIVFHDVDLLEQAFTHSSYVNEHRNLHLSDNERLEFLGDAVLELIVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+       EG+L+    ++V  ++ S  A++     +IR+             S+  
Sbjct: 61  RYLYRELPDLPEGKLTKLRAAIVREDSLSMFAKDCRFDQYIRLGKGEENSGGRKRPSLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD G+E    F+      +          D KT LQE       V+  Y
Sbjct: 121 DLFEAFLGALYLDQGLESVDGFLTAVVFPKVKAGAFSHEMDHKTRLQEVLQRSGDVSINY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++T   GP H+  F   V    +   +G   SK+ +EQ AA   L   
Sbjct: 181 RLTKEEGPAHERIFWTEVYCDDVLIGEGQGKSKKLSEQAAAENALASL 228


>gi|303252175|ref|ZP_07338343.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|302648958|gb|EFL79146.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
          Length = 223

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF  F
Sbjct: 1   MQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V    
Sbjct: 118 AAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDIK 177

Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 178 GEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 220


>gi|194014593|ref|ZP_03053210.1| ribonuclease III [Bacillus pumilus ATCC 7061]
 gi|194013619|gb|EDW23184.1| ribonuclease III [Bacillus pumilus ATCC 7061]
          Length = 247

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 104/224 (46%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  LF
Sbjct: 17  QFREFQQRISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG+L+    ++V   +   +A EL     + +             ++ ADV E
Sbjct: 77  AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G+E    F++ Y   +          D K++LQE+         EY +  
Sbjct: 137 AFIGALYLDQGLEPVERFLEAYVYPKINDGAFSHVMDFKSQLQEFVQRDGKGVLEYHILH 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H+  F   V + G     G   SK+ AEQ AA E L + 
Sbjct: 197 EKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHAAQEALAKL 240


>gi|157692273|ref|YP_001486735.1| ribonuclease III [Bacillus pumilus SAFR-032]
 gi|157681031|gb|ABV62175.1| ribonuclease III [Bacillus pumilus SAFR-032]
          Length = 247

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  LF
Sbjct: 17  QFREFQQRISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG+L+    ++V   +   +A EL     + +             ++ ADV E
Sbjct: 77  AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G+E    F++ Y   +          D K++LQE+         EY++  
Sbjct: 137 AFIGALYLDQGLEPVERFLEAYVYPKINDGAFSHVMDFKSQLQEFVQRDGKGVLEYRILH 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H+  F   V + G     G   SK+ AEQ AA E L + 
Sbjct: 197 EKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHAAQEALAKL 240


>gi|189043297|sp|A8Z6F6|RNC_CAMC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|158604915|gb|ABW74738.1| ribonuclease III [Campylobacter concisus 13826]
          Length = 223

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M        E+ +GY F    LLE+ALTH S       + ERLEFLGD ++ LL++  LF
Sbjct: 1   MK--NLEEFERNLGYKFKKSELLEEALTHKS--TKQALNNERLEFLGDAVMDLLVAEYLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV+ ++ + +AR L +  F+R+S     +      SI +D  E
Sbjct: 57  KKFSKIAEGDMSKLRAALVNEKSFANMARRLKMGEFLRLSQAEENNGGREKDSILSDAFE 116

Query: 121 SLIAALYLDGG--IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+YL+ G       +          +      +D KT LQE   A  GV P Y++ 
Sbjct: 117 AVMGAIYLEAGLLKVREISISLLELCYPQIDFAHLEKDYKTALQEVTQATLGVIPTYELI 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDH   F + + ++G   ++ +  SK+ A+Q+AA   L++  
Sbjct: 177 GSFGPDHKKEFEIALLLNGKEISRAVGSSKKQAQQLAAKIALEKIK 222


>gi|307704936|ref|ZP_07641827.1| ribonuclease III [Streptococcus mitis SK597]
 gi|307621550|gb|EFO00596.1| ribonuclease III [Streptococcus mitis SK597]
          Length = 232

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +   D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVVKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|83858196|ref|ZP_00951718.1| ribonuclease III [Oceanicaulis alexandrii HTCC2633]
 gi|83853019|gb|EAP90871.1| ribonuclease III [Oceanicaulis alexandrii HTCC2633]
          Length = 228

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 132/223 (59%), Gaps = 2/223 (0%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLL 59
            + R    E RI Y F +R LLE+ALTH+S         S ERLEFLGDR+LGL+ S  L
Sbjct: 1   MSDRIKDFEARINYRFKDRELLERALTHASHGDGRSRAASNERLEFLGDRVLGLMASQRL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F + +EG L+ R N++V+   C++ AR  DL   +R+S+   +       SI AD  
Sbjct: 61  YETFPNLEEGGLAQRLNAVVNKSACARAARRCDLGEGLRLSAAEERLGGREKESIIADAC 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++I ALYLDGG++ A  F   +W     +  +  +DAK++LQEWA  K    P Y+   
Sbjct: 121 EAVIGALYLDGGLDAAWAFFTTFWADEIDQLTRRPKDAKSQLQEWAAQKGYGVPVYETVA 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           R GPDH P F + V + G+APA+G   SK+ A++ AA+E+LKR
Sbjct: 181 RKGPDHRPVFEIEVRLDGVAPARGEGGSKQDAQRAAASEMLKR 223


>gi|229828999|ref|ZP_04455068.1| hypothetical protein GCWU000342_01084 [Shuttleworthia satelles DSM
           14600]
 gi|229792162|gb|EEP28276.1| hypothetical protein GCWU000342_01084 [Shuttleworthia satelles DSM
           14600]
          Length = 230

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 5/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
           +R  TLE +IGY F ++SLL +ALTHSS ++          ERLEFLGD +L ++ S  L
Sbjct: 1   MRNETLEAKIGYQFQDKSLLRQALTHSSFANERHMKAHSDNERLEFLGDAVLEVVSSEFL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + ++    EG L+    SLV   T +  ARE+ L + +R++    +       SI +D +
Sbjct: 61  YLNYPDLPEGRLTPLRASLVCEPTLAIAAREIGLGACLRLARGEDQSGGRERDSILSDAL 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++I A++LDGGIE A   + +Y     ++  K   D+KT LQE   A    + +Y +  
Sbjct: 121 EAVIGAVFLDGGIEPAKALIIRYIL-TDIEHKKLYHDSKTRLQEMVQAMEEASLDYVLVR 179

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GPDH  RF     + G    +G   SK+A+EQ AA + L    
Sbjct: 180 EEGPDHAKRFVTEARLDGRTIGRGEGGSKKASEQEAAYQGLLYLK 224


>gi|113461383|ref|YP_719452.1| ribonuclease III [Haemophilus somnus 129PT]
 gi|112823426|gb|ABI25515.1| RNAse III [Haemophilus somnus 129PT]
          Length = 227

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 81/229 (35%), Positives = 127/229 (55%), Gaps = 7/229 (3%)

Query: 1   MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M   ++   L+K++G+ F N   L++ALTH S +     + ERLEFLGD IL   I   L
Sbjct: 1   MKKIMQLEKLQKKLGHQFTNLDYLKQALTHRSAA---AFNNERLEFLGDSILNFAIGKAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F  + EGELS    +LV  +T + VAR+++L  ++++ +   K       SI +D V
Sbjct: 58  YEKFPKSNEGELSRMRATLVKEQTLAVVARQVELGDYLKLGAGELKSGGFRRESILSDCV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+LIAA+YLD GI+VA   V +++++    +K G+ ++D KT LQE+        PEY+V
Sbjct: 118 EALIAAIYLDAGIDVALARVYQWYQELLEQIKPGEAQKDPKTRLQEFLQGHRLKLPEYEV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225
               G  H+  F V  ++  L     G   S+R AEQ AA + +++  I
Sbjct: 178 IEIKGDAHNQSFRVSCKVETLTDVVFGQGTSRRKAEQHAAQQAIEKLKI 226


>gi|15903170|ref|NP_358720.1| ribonuclease III [Streptococcus pneumoniae R6]
 gi|116517072|ref|YP_816576.1| ribonuclease III [Streptococcus pneumoniae D39]
 gi|148989271|ref|ZP_01820651.1| ribonuclease III [Streptococcus pneumoniae SP6-BS73]
 gi|148998680|ref|ZP_01826119.1| ribonuclease III [Streptococcus pneumoniae SP11-BS70]
 gi|168575703|ref|ZP_02721618.1| ribonuclease III [Streptococcus pneumoniae MLV-016]
 gi|194398097|ref|YP_002037848.1| ribonuclease III [Streptococcus pneumoniae G54]
 gi|307067896|ref|YP_003876862.1| dsRNA-specific ribonuclease [Streptococcus pneumoniae AP200]
 gi|73917586|sp|Q8DPJ8|RNC_STRR6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122278538|sp|Q04K72|RNC_STRP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741378|sp|B5E4Y2|RNC_STRP4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|15458754|gb|AAK99930.1| Ribonuclease III [Streptococcus pneumoniae R6]
 gi|116077648|gb|ABJ55368.1| ribonuclease III [Streptococcus pneumoniae D39]
 gi|147755517|gb|EDK62565.1| ribonuclease III [Streptococcus pneumoniae SP11-BS70]
 gi|147925249|gb|EDK76328.1| ribonuclease III [Streptococcus pneumoniae SP6-BS73]
 gi|183578209|gb|EDT98737.1| ribonuclease III [Streptococcus pneumoniae MLV-016]
 gi|194357764|gb|ACF56212.1| ribonuclease III [Streptococcus pneumoniae G54]
 gi|306409433|gb|ADM84860.1| dsRNA-specific ribonuclease [Streptococcus pneumoniae AP200]
          Length = 232

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      FA++ LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFEIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +   D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|303251584|ref|ZP_07337758.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302649582|gb|EFL79764.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 223

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF  F
Sbjct: 1   MQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V    
Sbjct: 118 AAIYLDAGMDKAIAQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDIK 177

Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 178 GEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 220


>gi|227500106|ref|ZP_03930177.1| ribonuclease III [Anaerococcus tetradius ATCC 35098]
 gi|227217821|gb|EEI83118.1| ribonuclease III [Anaerococcus tetradius ATCC 35098]
          Length = 239

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFN 61
           +    E++IGY+F ++ L++ A THSS ++     ++S ERLEFLGD IL +++S +LF 
Sbjct: 10  KIEEFEEKIGYSFNDKELIDVAFTHSSYTNEVKGKKKSNERLEFLGDSILDMIVSEILFK 69

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++    EG L+   + LV   + ++   +  ++S++   +  ++        ++AD  E+
Sbjct: 70  NYSQKPEGWLTKTRSRLVCTSSFAKACEKFQMSSYLNFGNGEKQGGGELKKHVKADTFEA 129

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           + AA+YLD   E    F+   +K      +       D KT+LQE+ +AK     +Y++T
Sbjct: 130 VCAAIYLDSSYENLFNFLVTNYKAEALHVINDDSIFNDYKTKLQEYHNAKDKKILKYELT 189

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GP+H   FT+ V++     A G+  +K+ AEQ+AA    ++  
Sbjct: 190 KEEGPEHSKTFTMAVKLGNKILAYGVGKNKKQAEQMAAKAAFEKIN 235


>gi|149002616|ref|ZP_01827548.1| ribonuclease III [Streptococcus pneumoniae SP14-BS69]
 gi|168485011|ref|ZP_02709949.1| ribonuclease III [Streptococcus pneumoniae CDC1873-00]
 gi|168491168|ref|ZP_02715311.1| ribonuclease III [Streptococcus pneumoniae CDC0288-04]
 gi|225856914|ref|YP_002738425.1| ribonuclease III [Streptococcus pneumoniae P1031]
 gi|237649948|ref|ZP_04524200.1| ribonuclease III [Streptococcus pneumoniae CCRI 1974]
 gi|237822503|ref|ZP_04598348.1| ribonuclease III [Streptococcus pneumoniae CCRI 1974M2]
 gi|254807905|sp|C1CKY7|RNC_STRZP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|147759227|gb|EDK66220.1| ribonuclease III [Streptococcus pneumoniae SP14-BS69]
 gi|172041872|gb|EDT49918.1| ribonuclease III [Streptococcus pneumoniae CDC1873-00]
 gi|183574495|gb|EDT95023.1| ribonuclease III [Streptococcus pneumoniae CDC0288-04]
 gi|225724496|gb|ACO20348.1| ribonuclease III [Streptococcus pneumoniae P1031]
 gi|332200695|gb|EGJ14767.1| ribonuclease III [Streptococcus pneumoniae GA41317]
 gi|332201711|gb|EGJ15781.1| ribonuclease III [Streptococcus pneumoniae GA47368]
          Length = 232

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFNQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +   D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVIIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|332685822|ref|YP_004455596.1| ribonuclease III [Melissococcus plutonius ATCC 35311]
 gi|332369831|dbj|BAK20787.1| ribonuclease III [Melissococcus plutonius ATCC 35311]
          Length = 230

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M       L++R G  F + +LLE+A THSS  + ++       ER+EFLGD +L L+IS
Sbjct: 1   MDDRLTKELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERIEFLGDAVLELIIS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  + +  EG+L+    ++V  ++ ++ A+E     +I + +          +++  
Sbjct: 61  QYLYQKYQNLPEGKLTKMRAAIVREDSLAKFAKECQFDQYILLGNGEENSGGRERSALLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD GIE    F+ +    +  + +     D KT LQE    K  V  +Y
Sbjct: 121 DLFEAFLGALYLDQGIETVKYFISEIIFPKIEEGNFSHEVDHKTHLQEVLQHKGDVNIDY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++    GP HD  F   +        +G   SK+ AEQ AA   LK  
Sbjct: 181 RLVDEKGPAHDRIFYTEIYADEKLIGRGHGRSKKLAEQDAAERALKEI 228


>gi|327441090|dbj|BAK17455.1| dsRNA-specific ribonuclease [Solibacillus silvestris StLB046]
          Length = 253

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 103/228 (45%), Gaps = 8/228 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTL 58
             ++  LE  +   F N+ LL +A THSS  + ++       ERLEFLGD +L L +S  
Sbjct: 20  KSQFEILENEMNIHFQNKDLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKY 79

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  F    EGEL+    S+V   +    A EL+   F+ +             ++ ADV
Sbjct: 80  LFEKFPHMSEGELTKLRASIVCEPSLVVFANELNFGQFVLLGKGEELTGGRERPALLADV 139

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKV 177
            ES + ALYLD G+EV   F+++    +          D K++LQE           Y++
Sbjct: 140 FESFVGALYLDQGLEVVVAFLERVVFPKVEVGAFSHVMDFKSQLQEIIQQTNNGLLNYEI 199

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKR 222
               GP H+  F   V ++      G   SK+ AEQ AA      LK+
Sbjct: 200 VDEKGPAHNRTFVSRVLLNSQELGIGRGKSKKEAEQQAAQSAMLMLKQ 247


>gi|172057915|ref|YP_001814375.1| ribonuclease III [Exiguobacterium sibiricum 255-15]
 gi|171990436|gb|ACB61358.1| Ribonuclease III [Exiguobacterium sibiricum 255-15]
          Length = 256

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 107/224 (47%), Gaps = 4/224 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFN 61
           ++  L++R+   FAN  LL++A THSS  +  +ES    ERLEFLGD +L L +S  LF 
Sbjct: 30  KFGQLQERLDIHFANVELLKQAFTHSSFVNEQRESDGDNERLEFLGDAVLELTVSRYLFQ 89

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H+    EGEL+    ++V   +  Q A   + +  I +             ++ ADV E+
Sbjct: 90  HYPERSEGELTKLRAAIVCEPSLVQFANHYEFSEMILLGKGEELTGGRNRPALLADVFEA 149

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD GIE A  F+ +    +      + + D K++LQE          EY++   
Sbjct: 150 FIGALYLDQGIEAAERFLAEAVFPKVASGFFEEQTDFKSQLQEAIQRVGLGQIEYEIIEE 209

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GP H   F   V I+      G   SK+ AEQ AA + L    
Sbjct: 210 RGPAHSREFISRVHIADKLEGIGTGRSKKEAEQQAAKQALLELK 253


>gi|311068114|ref|YP_003973037.1| ribonuclease III [Bacillus atrophaeus 1942]
 gi|310868631|gb|ADP32106.1| ribonuclease III [Bacillus atrophaeus 1942]
          Length = 249

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 108/224 (48%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  LF
Sbjct: 19  QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG+L+    ++V   +   +A EL     + +             ++ ADV E
Sbjct: 79  AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G+E   +F+  Y   +          D K++LQE+       T EYK+  
Sbjct: 139 AFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRDGKGTLEYKIQN 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H+  F  +V + G A   G   SK+ AEQ AA E L + 
Sbjct: 199 EKGPAHNREFEAIVSLKGEALGIGNGRSKKEAEQHAAQEALAKL 242


>gi|15901109|ref|NP_345713.1| ribonuclease III [Streptococcus pneumoniae TIGR4]
 gi|111658429|ref|ZP_01409108.1| hypothetical protein SpneT_02000400 [Streptococcus pneumoniae
           TIGR4]
 gi|22654070|sp|Q97QG6|RNC_STRPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|14972730|gb|AAK75353.1| ribonuclease III [Streptococcus pneumoniae TIGR4]
          Length = 232

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      FA++ LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +   D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 180 QVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|154686009|ref|YP_001421170.1| ribonuclease III [Bacillus amyloliquefaciens FZB42]
 gi|189043290|sp|A7Z4L3|RNC_BACA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|154351860|gb|ABS73939.1| Rnc [Bacillus amyloliquefaciens FZB42]
          Length = 249

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 107/224 (47%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  LF
Sbjct: 19  QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG+L+    ++V   +   +A EL     + +             ++ ADV E
Sbjct: 79  AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G++    F+  Y   +          D K++LQE+       + EYK+  
Sbjct: 139 AFIGALYLDQGLDPVQQFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRDGKGSLEYKILN 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H+  F  +V + G A   G   SK+ AEQ AA E L + 
Sbjct: 199 EKGPAHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAKM 242


>gi|296273889|ref|YP_003656520.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299]
 gi|296098063|gb|ADG94013.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299]
          Length = 223

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+   Y  LEK + Y F N+ L+ +ALTH S    Y  + ERLEFLGD +L L++   L+
Sbjct: 1   MN--DYVNLEKCLDYQFKNKDLIVEALTHKSFKKPY--NNERLEFLGDAVLNLIVGEYLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  + EG+LS    SLV+    +++A E+ L  +I +S    ++      SI +D  E
Sbjct: 57  KKFPQSNEGDLSKIRASLVNETGFTKLANEIKLGDYIYLSIAEERNKGRTKASILSDAFE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178
           S++ A+YL+ G+E     +    ++   K        D KT LQE   A+FG  P+YK+ 
Sbjct: 117 SIMGAIYLESGLETLKPIILTLLEKSYDKINLDVLFSDYKTALQEITQAEFGSIPDYKIE 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDH   F V + I+     Q +  SK+ A+Q  A   L +  
Sbjct: 177 GSYGPDHKKEFEVSIWINNQCYGQAIGKSKKLAQQAVAKIALDKLK 222


>gi|266623888|ref|ZP_06116823.1| ribonuclease III [Clostridium hathewayi DSM 13479]
 gi|288864294|gb|EFC96592.1| ribonuclease III [Clostridium hathewayi DSM 13479]
          Length = 229

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 5/229 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57
            + +   LE RIGY F +R LL +A+THSS ++ ++    E  ERLEFLGD +L ++ S 
Sbjct: 1   MSKKLHELEGRIGYRFTDRQLLTQAMTHSSYANEHRLNKLECNERLEFLGDSVLEVVSSD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L++ +    EG+L+    S+V   T +  A ++DL +++ +             S+ +D
Sbjct: 61  FLYHKYPERPEGDLTKIRASIVCEPTLAYCAEDIDLGAYLLLGKGEEATGGRGRASVVSD 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+YLDGG   A  F+ ++     ++  +   D+KT LQE   ++      Y++
Sbjct: 121 AMEALIGAIYLDGGFANAKEFILRFIMN-DIEHKQLFFDSKTILQEIVQSQTDQPLAYEL 179

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
               GPDH+  F     I      +G   +K+AAE VAA   + +   W
Sbjct: 180 LREEGPDHNKLFESRALIGEEEIGRGTGRTKKAAEAVAAYHGILKLKKW 228


>gi|169350084|ref|ZP_02867022.1| hypothetical protein CLOSPI_00826 [Clostridium spiroforme DSM 1552]
 gi|169293297|gb|EDS75430.1| hypothetical protein CLOSPI_00826 [Clostridium spiroforme DSM 1552]
          Length = 226

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 4/224 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60
           +      + +   + +  + ++A TH+S ++  +     YERLEFLGD +L   +S  LF
Sbjct: 1   MELEKFLQAMEIPYHDIEIFKQAFTHTSYANENKLKNHDYERLEFLGDAVLQYHVSRYLF 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + + +  EG L+   + LV  E+ ++ ARELDL ++I + +    +      S+ AD+ E
Sbjct: 61  DLYPTMPEGRLTKLRSKLVREESLARFARELDLGTYIYLGAGEINNGGRDRDSVLADIFE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + + A+  D G+E     + K   +     +     D KT+LQE   A    T  Y++  
Sbjct: 121 AFMGAICHDCGMEYVDMMLKKTIYRHVNDVNYDDITDFKTKLQELIQADQRKTVTYELLS 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +GP ++P F + V +  +    G+  SK+ AEQ AA + L + 
Sbjct: 181 ATGPSNNPVFEMAVRMDDMILGTGIGSSKKRAEQQAAKDALNKL 224


>gi|205373341|ref|ZP_03226145.1| ribonuclease III [Bacillus coahuilensis m4-4]
          Length = 249

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 112/224 (50%), Gaps = 5/224 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG +F+N S+L++A THSS  + ++    E  ERLEFLGD +L L +S  L+N
Sbjct: 19  FKDFQEKIGISFSNVSILKQAFTHSSYVNEHRKKPFEDNERLEFLGDAVLELTVSHFLYN 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A ELD  S + +             ++ ADV E+
Sbjct: 79  KYATMSEGELTKLRAAIVCEPSLVKFANELDFGSVVLLGKGEELTGGRTRPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G++    F+++    +          D K++LQE    +     EY++   
Sbjct: 139 FIGALYLDQGLQSVEKFLEQIVFPKINDGAFSHVMDYKSQLQELIQREGSGQLEYRILLE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GP H   F   V ++ +    G   SK+ AEQ AA + L+   
Sbjct: 199 KGPAHSKEFVSQVLLNSMEIGVGNGRSKKEAEQHAAQKALEHLK 242


>gi|168188027|ref|ZP_02622662.1| ribonuclease III [Clostridium botulinum C str. Eklund]
 gi|169294133|gb|EDS76266.1| ribonuclease III [Clostridium botulinum C str. Eklund]
          Length = 237

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 116/230 (50%), Gaps = 7/230 (3%)

Query: 1   MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLI 55
           M   R    + +E ++   F + ++L+ ALTHSS  +  +   S ERLEFLGD IL L I
Sbjct: 1   MKKNRKIILNEVENKLKVKFNDINILDTALTHSSFINENKNINSNERLEFLGDSILQLCI 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S LL+N +    EG L+ +   +V   +  +VA++ ++  +I +S           TSI 
Sbjct: 61  SELLYNKYKDEPEGFLTKKRALIVCGNSLHEVAKKWNIGKYINMSKGEEMTGGRTRTSIL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTP 173
           +D VE++IA++YLD G EVA  F+ + + +      S +   D KT+LQE          
Sbjct: 121 SDCVEAIIASIYLDQGYEVAKNFILENFDEIIQKAHSNEIILDYKTKLQEIIQKFGEYNI 180

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           EY +    GP H  +F   V +  L    G   SK+ +EQ AA E LK  
Sbjct: 181 EYTLISFEGPPHRRKFVTEVSVDSLVKGIGEGYSKKESEQNAAREALKGL 230


>gi|303256999|ref|ZP_07343013.1| ribonuclease III [Burkholderiales bacterium 1_1_47]
 gi|330999188|ref|ZP_08322907.1| ribonuclease III [Parasutterella excrementihominis YIT 11859]
 gi|302860490|gb|EFL83567.1| ribonuclease III [Burkholderiales bacterium 1_1_47]
 gi|329575388|gb|EGG56932.1| ribonuclease III [Parasutterella excrementihominis YIT 11859]
          Length = 228

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 74/218 (33%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + LE+RIGY F N+ LL +A+TH S S  +    ERLEFLGD +L  +I   LF     
Sbjct: 4   LTVLEERIGYTFKNKELLRRAMTHRSFSAEH---NERLEFLGDSVLNCVIGNALFLKDKH 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG LS   ++LV     +++A  + ++ F++V +  +    +   S  AD VE++  A
Sbjct: 61  FDEGSLSRVRSNLVRQSALAEIAERIGISDFLKVGAGEKHTGGNHRPSTIADAVEAIFGA 120

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ++ DGG E A T + + ++    +       +DAKT LQE         P Y +    G 
Sbjct: 121 VFTDGGFEEAQTVIIRLYEPMLSQLTPTTLGKDAKTNLQEVLQRMHFGLPLYDIVEIRGA 180

Query: 184 DHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220
            HD  F V V+I  L  +  G+  S+R AEQ AA + L
Sbjct: 181 PHDQEFEVRVDIPDLGISLTGVGKSRRQAEQDAAQKAL 218


>gi|227484649|ref|ZP_03914965.1| ribonuclease III [Anaerococcus lactolyticus ATCC 51172]
 gi|227237369|gb|EEI87384.1| ribonuclease III [Anaerococcus lactolyticus ATCC 51172]
          Length = 237

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 6/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61
           +    EK IGY F +++L++ A THSS ++  +   +S ERLEFLGD IL +++S  LF 
Sbjct: 10  KIEEFEKSIGYTFNDKTLIDVAFTHSSFTNEARIKTKSNERLEFLGDTILDMVVSEYLFK 69

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++    EG L+   + +V  ++ ++   + DL  ++R     +K        ++AD  E+
Sbjct: 70  NYKEKPEGWLTRTRSRIVCTDSFAKACEKFDLTKYLRFGMGEKKQGGKLKKHVKADTFEA 129

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
             AA+YLD   +    F+   + +   + +       D KT LQE+ +A       Y++ 
Sbjct: 130 FCAAIYLDSSYQRLFEFLKSNYSEEVLQIINDDSLFLDYKTRLQEYYNAHSKKNLSYELI 189

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GP+HD  FT+ V +   A AQG   +K+ AEQ+AA    +
Sbjct: 190 KEVGPEHDKTFTMEVRLGNRALAQGEGKNKKTAEQMAAKAAYE 232


>gi|308061992|gb|ADO03880.1| ribonuclease III [Helicobacter pylori Cuz20]
          Length = 239

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +   +        D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 196 DHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 236


>gi|167765553|ref|ZP_02437617.1| hypothetical protein CLOSS21_00047 [Clostridium sp. SS2/1]
 gi|317498509|ref|ZP_07956803.1| ribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167712738|gb|EDS23317.1| hypothetical protein CLOSS21_00047 [Clostridium sp. SS2/1]
 gi|291559019|emb|CBL37819.1| RNAse III [butyrate-producing bacterium SSC/2]
 gi|316894202|gb|EFV16390.1| ribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 228

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 111/226 (49%), Gaps = 5/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M A      +++IG  F   S L  A  HSS ++  +    ++ ERLEFLGD +L L+ S
Sbjct: 1   MDAKSVEEFQEQIGIKFHEPSRLWNAFIHSSYANERRMSKDKNNERLEFLGDAVLELVTS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS    SLV   T +  AR+++L  ++ +S            SI +
Sbjct: 61  NYLYRTYQKESEGKLSKIRASLVCEPTLAGCARDINLGKYVLLSKGEDMTGGRSRDSILS 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E++I A+YLD GIE A  F++ Y  +       F  DAKT LQE    +     +Y 
Sbjct: 121 DAFEAVIGAIYLDQGIETATKFIETYLFKDVENKVLFF-DAKTNLQEIVQGEGKGRLKYV 179

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +    GPDH   FTV   +       G   SK++AEQ AA E +KR
Sbjct: 180 LVGEEGPDHAKIFTVEARLGENVIGTGSGHSKKSAEQHAAFEAIKR 225


>gi|227872403|ref|ZP_03990750.1| ribonuclease III [Oribacterium sinus F0268]
 gi|227841763|gb|EEJ52046.1| ribonuclease III [Oribacterium sinus F0268]
          Length = 241

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 116/235 (49%), Gaps = 10/235 (4%)

Query: 1   MSAL----RYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILG 52
           M  +      S LE+ +GY F ++ LL  ALTH S S+      + S +RLEFLGD +L 
Sbjct: 2   MENMGSTPSLSKLEEDLGYHFQDQKLLLHALTHPSYSNEMGHPKEASNQRLEFLGDAVLE 61

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L+ STLL++     +EG ++    +LV     + VA+ L L+S++ +     ++   F  
Sbjct: 62  LVSSTLLYHKKPVIQEGRMTKLRAALVCESALAVVAKSLQLSSYLLLGKGEEREGIQFRD 121

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
           S+ +D +E++I A+YLDGG++ A  FV             F+       +     ++   
Sbjct: 122 SVLSDALEAVIGAIYLDGGMKKAECFVRGKVLSDIEHKTLFQDAKTMLQEYCTAKRY--P 179

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
            EY +   SGP H   + V V+++      G   SK+ AEQ AA   L++  + T
Sbjct: 180 LEYDLLEESGPFHQRFYKVSVKVNEEVYGIGEGSSKKKAEQAAAYFALEKIKVET 234


>gi|77919004|ref|YP_356819.1| RNase III [Pelobacter carbinolicus DSM 2380]
 gi|90101632|sp|Q3A4Q8|RNC_PELCD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|77545087|gb|ABA88649.1| RNAse III [Pelobacter carbinolicus DSM 2380]
          Length = 232

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 6/221 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE  I Y F N++LL +ALTH S S+   +      ERLEFLGD +LG+++S  +F  F 
Sbjct: 10  LEDTIDYVFDNQALLLEALTHKSFSNEQNDRTEPDNERLEFLGDAVLGVVVSHYIFRTFP 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+   + +VS +  + + + + L  ++R+     +      +S+ A+ +E+L+ 
Sbjct: 70  HLPEGELTRIRSEVVSEKGLTVIGKAICLGDYMRLGKGEERSGGRQKSSLLANTMEALLG 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++ DGG +     ++  +     +    K   D KT LQE   A+FG  P+Y +    G
Sbjct: 130 AVFCDGGFDSVRRVIEALFIPHIQRAARRKTGVDYKTRLQERLQARFGDVPQYVLIHADG 189

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P H   ++V     G    QG   SK++AEQ AA + L+  
Sbjct: 190 PPHQRSYSVEAHFRGSCIGQGQGRSKKSAEQAAAKQALEYL 230


>gi|296876109|ref|ZP_06900163.1| ribonuclease III [Streptococcus parasanguinis ATCC 15912]
 gi|296432820|gb|EFH18613.1| ribonuclease III [Streptococcus parasanguinis ATCC 15912]
          Length = 233

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L +R    F++ SLL+ A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MEKLQ-ALLLERFQIVFSDSSLLDTAFTHTSYANEHRLLKISHNERLEFLGDAVLQLVIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+    +  EG+LS   + +V  E+ +  +R+     +I++     K       +I  
Sbjct: 60  EYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDRYIKLGKGEEKSGGRDRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD G+E    F+ +    +          D KT LQE       V  +Y
Sbjct: 120 DLFEAFLGALLLDQGVEAVKRFIYQVMIPKVETGQFSQVIDYKTRLQELLQVHGDVEIQY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +V   SGP H   F V V ++G     G   SK+ AEQ AA   ++
Sbjct: 180 QVVSESGPAHAKEFEVEVFVNGQTMGHGHGRSKKLAEQEAARNAVE 225


>gi|311693675|gb|ADP96548.1| ribonuclease 3 [marine bacterium HP15]
          Length = 229

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 113/229 (49%), Gaps = 7/229 (3%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           MS+      L++RIGY F +   L  ALTH S  +   ++ ERLEFLGD I+ ++I+  L
Sbjct: 1   MSSQPDLDQLQRRIGYQFKSPERLLLALTHRSYGN---QNNERLEFLGDSIVNMVIAEYL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F HF+ A+EG+LS     +V   T +++ RE  L +++R+ S   K       SI AD V
Sbjct: 58  FLHFEKAREGQLSRLRARMVKGVTLAEIGREFQLGTYLRLGSGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ES+I A+YLD                +   L     ++D KT LQE+  ++    P Y V
Sbjct: 118 ESIIGAIYLDSDFHTCREQVLRWFEHRLEKLDLQDTQKDPKTRLQEYLQSRQFPLPRYDV 177

Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
               G  H+  F V   +  L     G   S+R AEQ AA   LK  G+
Sbjct: 178 ISVDGEAHNQTFHVSCALPSLDRKTTGTGSSRRVAEQQAARNALKELGV 226


>gi|317181975|dbj|BAJ59759.1| ribonuclease III [Helicobacter pylori F57]
          Length = 238

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 4/224 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ 
Sbjct: 14  NSSYATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 71

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L
Sbjct: 72  FYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEAL 131

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +A +YL+ G+            +   +        D KT LQE   A+F V P Y++   
Sbjct: 132 MAGVYLEAGLAKVRKITQNLLNRTYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 191

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GPDH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 192 KGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 235


>gi|33152642|ref|NP_873995.1| ribonuclease III [Haemophilus ducreyi 35000HP]
 gi|73917578|sp|Q7VL75|RNC_HAEDU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|33148866|gb|AAP96384.1| ribonuclease III [Haemophilus ducreyi 35000HP]
          Length = 222

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L+K+IGY FAN   L +ALTH S +    ++ ERLEFLGD IL   I   LF  F
Sbjct: 1   MYIERLQKKIGYQFANLDYLLQALTHRSAA---AKNNERLEFLGDSILNYAIGQALFERF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+ DL  ++++ +   K       SI +D VE++I
Sbjct: 58  PQANEGELSRMRATLVREQTLAILARQFDLGEYMKLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A   +  +++     +K G  ++D KT LQE+   +    PEY+V    
Sbjct: 118 AAIYLDAGMDKASERIYAWYQTLLDEMKPGDAQKDPKTRLQEFLQGRRLKLPEYEVLDIK 177

Query: 182 GPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREG 224
           G  H+  F V  +I        G+  S+R AEQ AA ++L +  
Sbjct: 178 GEAHNQIFKVSCKIETFTDIFIGIGTSRRKAEQNAAEQILLKLN 221


>gi|323484230|ref|ZP_08089599.1| hypothetical protein HMPREF9474_01350 [Clostridium symbiosum
           WAL-14163]
 gi|323692112|ref|ZP_08106358.1| ribonuclease III [Clostridium symbiosum WAL-14673]
 gi|323402472|gb|EGA94801.1| hypothetical protein HMPREF9474_01350 [Clostridium symbiosum
           WAL-14163]
 gi|323503835|gb|EGB19651.1| ribonuclease III [Clostridium symbiosum WAL-14673]
          Length = 228

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 115/227 (50%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56
           M   +   LE++ GY F NR LL +A+THSS ++   +S     ERLEFLGD +L ++ S
Sbjct: 1   MDK-KLMELEEKTGYHFNNRELLGRAMTHSSYANECHKSKLECNERLEFLGDAVLEIVSS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF+ F    EG+L+    S+V   T +  A EL L  ++ +             S+ +
Sbjct: 60  DFLFHKFPDMPEGDLTKTRASMVCEPTLAYCAEELSLGKYLLLGKGEEATGGRNRNSVVS 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LI A+YLDGG   A  F+ K+         K   D+KT LQE   ++      Y+
Sbjct: 120 DAMEALIGAIYLDGGFASAKEFIHKFILNDMEHK-KLFYDSKTILQEIVQSRCEEGLSYQ 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GPDH+  F V  +I      +G   +K+AAEQ+AA   + + 
Sbjct: 179 LLREEGPDHNKMFEVAAKIGEKEIGRGTGRTKKAAEQLAAYRGILKI 225


>gi|308063545|gb|ADO05432.1| ribonuclease III [Helicobacter pylori Sat464]
          Length = 238

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 17  YATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 74

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 75  YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 134

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +   +        D KT LQE   A+F V P Y++    GP
Sbjct: 135 VYLEAGLAKVQKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGP 194

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 195 DHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 235


>gi|261838098|gb|ACX97864.1| ribonuclease III [Helicobacter pylori 51]
          Length = 239

 Score =  148 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ 
Sbjct: 15  NSSYATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 72

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L
Sbjct: 73  FYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEAL 132

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +A +YL+ G+      +     +   +        D KT LQE   A+F V P Y++   
Sbjct: 133 MAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 192

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GPDH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 193 KGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 236


>gi|222148081|ref|YP_002549038.1| ribonuclease III [Agrobacterium vitis S4]
 gi|259491897|sp|B9JUN7|RNC_AGRVS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|221735069|gb|ACM36032.1| ribonuclease III [Agrobacterium vitis S4]
          Length = 239

 Score =  148 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 130/221 (58%), Positives = 157/221 (71%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +E  IGY F  +  L+KALTHSS   +    YERLEFLGDR+LGL ++  LF  F +A
Sbjct: 13  EKVEAVIGYHFIGKERLDKALTHSSARPAKGSDYERLEFLGDRVLGLCVAEHLFKVFRAA 72

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELSVR N LVSAETC+ VA E+ L  +IR  +D++K     M +++ADVVESLIAA+
Sbjct: 73  TEGELSVRLNQLVSAETCAAVADEIQLHRYIRTGADVKKLTDKNMLNVRADVVESLIAAI 132

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLD G+E A  FV K+W +RA +    RRDAKTELQEWAHAKF VTP Y+V  RSGPDHD
Sbjct: 133 YLDAGLEAARAFVLKFWAERASRQDAGRRDAKTELQEWAHAKFAVTPVYRVADRSGPDHD 192

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           P FTV VEI  L P  G+D SKRAAEQ AA  +L+REG+WT
Sbjct: 193 PSFTVTVEIGKLEPETGIDRSKRAAEQAAATRLLEREGVWT 233


>gi|85068686|gb|ABC54695.1| ribonuclease III [Ehrlichia sp. P-Mtn]
          Length = 228

 Score =  148 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 87/221 (39%), Positives = 130/221 (58%), Gaps = 3/221 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + + + IGY+F N  LL +ALTH S+S    +   +YERLEFLGD +L L+IS +LFN F
Sbjct: 4   NNISEIIGYSFKNIQLLNEALTHPSVSSSKDNINFNYERLEFLGDAVLNLVISEMLFNIF 63

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+ +  +LV      +VA+ ++L +FI +S   R    +  +S   + +E+LI
Sbjct: 64  PKDTEGNLAKKKTALVCGTKLVEVAQFINLGTFIIMSDGERTCGGANNSSNLENALEALI 123

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG++ A  F+  +WK  A       +DAKT LQEWA A+  + P Y +  +SGP
Sbjct: 124 GAIYLDGGLKAAKNFIFLFWKNSAKHMKVPPQDAKTILQEWAQAQGLLAPSYHIVNKSGP 183

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH+P FTV V ++     Q    +K+ AEQ AA+ +L +  
Sbjct: 184 DHNPTFTVEVRMNSHETLQATGNNKKIAEQKAASLMLAKIN 224


>gi|317180453|dbj|BAJ58239.1| ribonuclease III [Helicobacter pylori F32]
          Length = 238

 Score =  148 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 4/224 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ 
Sbjct: 14  NSSYATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 71

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L
Sbjct: 72  FYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEAL 131

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +A +YL+ G+            +   +        D KT LQE   A+F V P Y++   
Sbjct: 132 MAGVYLEAGLAKVRKITQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 191

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GPDH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 192 KGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 235


>gi|163793042|ref|ZP_02187018.1| SsrA-binding protein [alpha proteobacterium BAL199]
 gi|159181688|gb|EDP66200.1| SsrA-binding protein [alpha proteobacterium BAL199]
          Length = 227

 Score =  148 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 85/219 (38%), Positives = 123/219 (56%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             S L + +G+ F +  +L +A+TH+S       +YERLEFLGDR+L L ++  L + F 
Sbjct: 7   DLSHLAEVLGHTFNHPDILRRAVTHASAEPRAWNAYERLEFLGDRVLALAVAEQLLDRFP 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG ++ R  SLV  ET + VA  +DL  ++ VS            +I +D +E++IA
Sbjct: 67  HEREGAIAKRHVSLVRRETLADVAHTIDLGRYLIVSRGEDDAGARASDTILSDSMEAVIA 126

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           ALYLDGG+  A  F+ K+W        +  +D KT LQEWA  +    P Y    ++GP 
Sbjct: 127 ALYLDGGLAAAQKFILKHWNPLLEMDHRPPQDPKTGLQEWAQGRRLPLPVYTTVEQTGPA 186

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H P FTV V + GLAP +    SKR AEQ+AAA +L+  
Sbjct: 187 HAPEFTVEVVVEGLAPQRASGKSKRLAEQLAAAAMLEAI 225


>gi|163802958|ref|ZP_02196845.1| ribonuclease III [Vibrio sp. AND4]
 gi|159173248|gb|EDP58076.1| ribonuclease III [Vibrio sp. AND4]
          Length = 226

 Score =  148 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LE+++GY F +  L+  ALTH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIEKLERKLGYQFKDAGLINLALTHRSA---NSKHNERLEFLGDSILSFVIADELY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  IE     V  ++  R         ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDIEAVRGIVLSWYHSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FTV  +++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 177 NIKGEAHNQEFTVECDVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222


>gi|188585989|ref|YP_001917534.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|229564354|sp|B2A2N1|RNC_NATTJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|179350676|gb|ACB84946.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 230

 Score =  148 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 5/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
               L++++G    ++ LL +A+TH+S +H  ++     ERLEFLGD +L L IS  L+ 
Sbjct: 7   DIVELKEKLGIYVDDK-LLLQAVTHTSYAHEQKDVVDHNERLEFLGDAVLELAISETLYK 65

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EGEL+     LV   +  ++A +LDL  ++R+             S  AD VE+
Sbjct: 66  KYPELPEGELTKLRAELVCELSLVKIAEKLDLGKYLRLGKGEDSTGGRDRRSTLADTVEA 125

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           LI A+YL    +     +   +K + +    +   D KT +QE    ++G  P+Y++   
Sbjct: 126 LIGAVYLQTNYDQTKQLILDLFKDQLSHIDNQRIGDYKTMIQELVQDRYGDPPKYQIVKE 185

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGPDHD  F   V+I+     +G   SK+ AEQ AA    ++ 
Sbjct: 186 SGPDHDKSFVAEVQINNEVVGRGSGKSKKEAEQNAAHFAFQKL 228


>gi|217033708|ref|ZP_03439135.1| hypothetical protein HP9810_5g50 [Helicobacter pylori 98-10]
 gi|216943897|gb|EEC23334.1| hypothetical protein HP9810_5g50 [Helicobacter pylori 98-10]
          Length = 238

 Score =  148 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ 
Sbjct: 14  NSSYTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 71

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L
Sbjct: 72  FYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEAL 131

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +A +YL+ G+      +     +   +        D KT LQE   A+F V P Y++   
Sbjct: 132 MAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 191

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GPDH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 192 KGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 235


>gi|149194957|ref|ZP_01872050.1| ribonuclease III [Caminibacter mediatlanticus TB-2]
 gi|149134878|gb|EDM23361.1| ribonuclease III [Caminibacter mediatlanticus TB-2]
          Length = 227

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 118/220 (53%), Gaps = 4/220 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L+K +GY F +  L+ +ALTH S S  +  + ERLE+LGD +L L++   L+N F  A
Sbjct: 4   EELQKSLGYQFKDEKLITEALTHRSYSKEF--NNERLEYLGDAVLDLIVGEYLYNLFPKA 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG LS    +LV+ E+  ++A+ L+L  ++ +S     +      SI +   E+LI AL
Sbjct: 62  EEGILSKLRAALVNEESFDKLAKRLNLGKYLFLSPAEENNKGREKPSILSSAFEALIGAL 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YL+ G + A     K  K+   K       +D KT LQE   A FGV PEY++   +GPD
Sbjct: 122 YLEAGFDKAKEIALKLLKEEYPKITPEELLKDYKTTLQEITQAHFGVVPEYRLLSATGPD 181

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H   F + V I+    A+    SK+AA+Q  A   +++  
Sbjct: 182 HKKEFEIGVFINDREYARAKGRSKKAAQQEGARLTIEKLK 221


>gi|312868336|ref|ZP_07728536.1| ribonuclease III [Streptococcus parasanguinis F0405]
 gi|311096081|gb|EFQ54325.1| ribonuclease III [Streptococcus parasanguinis F0405]
          Length = 233

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L +R    F++ SLL+ A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MEKLQ-ALLSERFQIVFSDSSLLDTAFTHTSYANEHRLLKISHNERLEFLGDAVLQLVIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+    +  EG+LS   + +V  E+ +  +R+     +I++     K       +I  
Sbjct: 60  EYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDHYIKLGKGEEKSGGRDRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD G+E    F+ +    +          D KT LQE       V  +Y
Sbjct: 120 DLFEAFLGALLLDQGVEAVKRFIYQVMIPKVETGQFSQVIDYKTRLQELLQVHGDVEIQY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +V   +GP H   F V V ++G     G   SK+ AEQ AA   ++
Sbjct: 180 QVVSEAGPAHAKEFEVEVFVNGQTMGHGHGRSKKLAEQEAARNAVE 225


>gi|210612575|ref|ZP_03289366.1| hypothetical protein CLONEX_01568 [Clostridium nexile DSM 1787]
 gi|210151500|gb|EEA82507.1| hypothetical protein CLONEX_01568 [Clostridium nexile DSM 1787]
          Length = 231

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 110/220 (50%), Gaps = 5/220 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHF 63
            L++RIGY F  + LL+ AL HSS ++       +  ERLEFLGD +L L+ S  LF   
Sbjct: 7   ELQERIGYTFRRQELLKSALMHSSYTNETHLPKYKCNERLEFLGDAVLELVSSEFLFFAD 66

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EGEL+    S+V   + +  ARE++L  ++ +             SI +D +E+LI
Sbjct: 67  RKMPEGELTKTRASMVCEPSLAFCAREIELGKYLFMGRGEENTGGRERDSITSDALEALI 126

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG   A  F+ K+         K   D+KT LQE   A F     Y +    GP
Sbjct: 127 GAIYLDGGFANAKEFILKFVLNDLEHK-KLFYDSKTILQEIVQAHFPYGVLYHLIKEEGP 185

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH+  FTV V I      +G   +K+AAEQ AA   + + 
Sbjct: 186 DHNKSFTVAVHIGEECYGEGTGRTKKAAEQEAAYHAILKL 225


>gi|325478725|gb|EGC81836.1| ribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 236

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61
           +    E +IGY+F ++ L++ A THSS ++  +   +S ERLEFLGD IL +++S +LF 
Sbjct: 10  KIEEFENKIGYSFNDKELIDVAFTHSSYTNEARGESKSNERLEFLGDSILDMIVSEILFK 69

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H+++  EG L+   + LV   + ++   + D++S++      ++        ++AD  E+
Sbjct: 70  HYNNKPEGWLTKTRSRLVCTSSFAKACEKFDMSSYLNFGKGEKEHGGHLKKHVKADTFEA 129

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           + AA+YLD   E     + K +K+     +       D KT+LQE+ +AK     +Y++ 
Sbjct: 130 VCAAIYLDSSYEKLFDILVKNYKEEALVIINDDSIFNDYKTKLQEYHNAKDKKILKYELV 189

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GP+H   FT+ V++     A G+  +K+ AEQ AA     +  
Sbjct: 190 KEEGPEHAKTFTMAVKLGNRILATGVGKNKKQAEQDAAKAAYNKIK 235


>gi|323351215|ref|ZP_08086871.1| ribonuclease III [Streptococcus sanguinis VMC66]
 gi|322122439|gb|EFX94150.1| ribonuclease III [Streptococcus sanguinis VMC66]
 gi|324991496|gb|EGC23429.1| ribonuclease III [Streptococcus sanguinis SK353]
 gi|328946755|gb|EGG40893.1| ribonuclease III [Streptococcus sanguinis SK1087]
          Length = 232

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+   L ++    F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENLK-KALLEQFDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD G+E   +F+ +    +      +   D KT+LQE       V   Y
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPKVEAGDFERVTDYKTKLQELLQINGDVEITY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +V   +GP H   F V V I+G    QG   SK+ AEQ AA    ++
Sbjct: 180 QVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEK 226


>gi|84390104|ref|ZP_00991366.1| ribonuclease III [Vibrio splendidus 12B01]
 gi|86146359|ref|ZP_01064683.1| ribonuclease III [Vibrio sp. MED222]
 gi|218710569|ref|YP_002418190.1| ribonuclease III [Vibrio splendidus LGP32]
 gi|254807909|sp|B7VK79|RNC_VIBSL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|84376758|gb|EAP93633.1| ribonuclease III [Vibrio splendidus 12B01]
 gi|85835838|gb|EAQ53972.1| ribonuclease III [Vibrio sp. MED222]
 gi|218323588|emb|CAV19828.1| Ribonuclease III [Vibrio splendidus LGP32]
          Length = 225

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 118/226 (52%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LE++IGY F +  L+  ALTH S +    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIDKLERKIGYQFNDADLIHLALTHRSAA---GKHNERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE +L  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGHTLAELGREFELGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD   EV    +  +++ R         ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAVYLDSDTEVVRRIILSWYQSRLESIQPGVSQKDPKTRLQEFLQGRRNPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222


>gi|315303706|ref|ZP_07874220.1| ribonuclease III [Listeria ivanovii FSL F6-596]
 gi|313627919|gb|EFR96538.1| ribonuclease III [Listeria ivanovii FSL F6-596]
          Length = 229

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S
Sbjct: 1   MN--QWEELQESVGFYFEDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LFN +    EG ++    ++V   +  + A  +  + ++R+     K       ++ A
Sbjct: 59  DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKGEEKAGGRTRPALLA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           DV ES I ALYLD GI    TF+++    +          D KT+LQE       V  EY
Sbjct: 119 DVFESFIGALYLDNGIAKVVTFLERIIFPKIDAGAYLETVDYKTQLQEIVQRDRDVLIEY 178

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +   +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226


>gi|291522183|emb|CBK80476.1| RNAse III [Coprococcus catus GD/7]
          Length = 233

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 114/223 (51%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
              L+++I Y F + +LL  ALTHSS ++ ++       ERLEFLGD +L ++ S  LF 
Sbjct: 7   LKELQQKIDYQFKDENLLFTALTHSSYANEHKLHKIHHNERLEFLGDAVLEVVSSDFLFK 66

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +F    EG++S +  SLV   T +  AR++ L  ++ +             SI +D +E+
Sbjct: 67  NFPDMAEGQMSKKRASLVCEPTLAYCARQIGLGKYLMLGKGEDMGGGRNRDSILSDALEA 126

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +I ++YLDGGIE AG+F+  +            +D+KT LQE           Y+V   +
Sbjct: 127 VIGSIYLDGGIEQAGSFIMTHVLNDIEHK-AMFQDSKTILQELLQKDHKDPITYEVVDMT 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP+H+  F + V++      +G   +K+AA Q AA   +    
Sbjct: 186 GPEHNRMFVMQVKLGDRVIGKGSGRTKQAAGQEAAYHAILALK 228


>gi|225419776|ref|ZP_03762079.1| hypothetical protein CLOSTASPAR_06114 [Clostridium asparagiforme
           DSM 15981]
 gi|225041580|gb|EEG51826.1| hypothetical protein CLOSTASPAR_06114 [Clostridium asparagiforme
           DSM 15981]
          Length = 232

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56
           M+      LE+ I Y F    L  +ALTHSS ++ ++ +     ERLEFLGD +L ++ S
Sbjct: 1   MNR-NLQELERTICYQFKEHGLFVQALTHSSYANEHRWNHSRCNERLEFLGDAVLEIVTS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L++ ++   EG+L+    S+V   T +  A ++ L  ++ +             S+ +
Sbjct: 60  DFLYHKYEDLPEGDLTKIRASIVCEPTLAYCAGDISLGEYLLLGKGEEATGGRSRNSVVS 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LI A+YLDGG   A  F+ ++         +   D+KT LQE   ++      Y+
Sbjct: 120 DAMEALIGAIYLDGGFANAKEFIHRFILNDIEHK-QLFYDSKTILQEMVQSRSSEGLSYE 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +    GPDH+  F V   I G    +G   +K+AAEQVAA   + +  
Sbjct: 179 ILREEGPDHNKSFEVCARIGGAEIGRGTGRTKKAAEQVAAYNGILKLK 226


>gi|260899641|ref|ZP_05908036.1| ribonuclease III [Vibrio parahaemolyticus AQ4037]
 gi|308110559|gb|EFO48099.1| ribonuclease III [Vibrio parahaemolyticus AQ4037]
          Length = 225

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LE+++GY F +  L+  ALTH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIDKLERKLGYQFKDAGLINLALTHRSA---NSKHNERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  IE   + V  ++  R         ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDIEKVRSIVLSWYYSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222


>gi|166031773|ref|ZP_02234602.1| hypothetical protein DORFOR_01474 [Dorea formicigenerans ATCC
           27755]
 gi|166028226|gb|EDR46983.1| hypothetical protein DORFOR_01474 [Dorea formicigenerans ATCC
           27755]
          Length = 233

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/232 (33%), Positives = 118/232 (50%), Gaps = 9/232 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M       LE RIGY F + +LL+KA++HSS  +       E  ERLEFLGD +L L+ S
Sbjct: 3   MKR-NLKELEHRIGYTFQDFALLKKAMSHSSYVNEEHLPKYECNERLEFLGDAVLELVSS 61

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF    +  EGEL+    S+V     +  ARE++L  ++ +             S+ +
Sbjct: 62  EFLFFEHPTTPEGELTKTRASMVCEPALAFCAREIELGEYLLLGKGEDATGGRKRESVTS 121

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LI A+Y+DGG   A  F++++  +      K   D+KT LQE   A F     Y 
Sbjct: 122 DAMEALIGAIYVDGGFANAKEFINRFILKDLENK-KLFYDSKTILQEIVQAHFKEELSYH 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKREGI 225
           +    GPDHD  F V ++I       G   +K++AEQ AA +   +L+++ I
Sbjct: 181 LVGEEGPDHDKTFQVELQIGEQVYGIGKGRTKKSAEQEAAYKTILMLRKKNI 232


>gi|327463120|gb|EGF09441.1| ribonuclease III [Streptococcus sanguinis SK1]
 gi|327474731|gb|EGF20136.1| ribonuclease III [Streptococcus sanguinis SK408]
 gi|327490288|gb|EGF22076.1| ribonuclease III [Streptococcus sanguinis SK1058]
 gi|332362454|gb|EGJ40254.1| ribonuclease III [Streptococcus sanguinis SK1056]
          Length = 232

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+   L ++    F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENLK-KALLEQFDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD G+E   +F+ +    +      +   D KT+LQE       V   Y
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPKVEAGDFERVTDYKTKLQELLQINGDVEIAY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +V   +GP H   F V V I+G    QG   SK+ AEQ AA    ++
Sbjct: 180 QVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEK 226


>gi|148981907|ref|ZP_01816565.1| ribonuclease III [Vibrionales bacterium SWAT-3]
 gi|145960708|gb|EDK26050.1| ribonuclease III [Vibrionales bacterium SWAT-3]
          Length = 225

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 117/226 (51%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LE++IGY F +  L+  ALTH S +    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIDKLERKIGYQFNDADLIHLALTHRSAA---GKHNERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE +L  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGHTLAELGREFELGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD   E     +  +++ R         ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDTETVRGIILSWYQSRLEAIQPGVSQKDPKTRLQEFLQGRRNPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222


>gi|170719010|ref|YP_001784170.1| ribonuclease III [Haemophilus somnus 2336]
 gi|189043321|sp|B0USS1|RNC_HAES2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|168827139|gb|ACA32510.1| Ribonuclease III [Haemophilus somnus 2336]
          Length = 223

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 126/225 (56%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++G+ F N   L++ALTH S +     + ERLEFLGD IL   I   L+  F
Sbjct: 1   MQLEKLQKKLGHQFTNLDYLKQALTHRSAA---AFNNERLEFLGDSILNFAIGKALYEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             + EGELS    +LV  +T + VAR+++L  ++++ +   K       SI +D VE+LI
Sbjct: 58  PKSNEGELSRMRATLVKEQTLAVVARQVELGDYLKLGAGELKSGGFRRESILSDCVEALI 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD GI+VA   V +++++    +K G+ ++D KT LQE+        PEY+V    
Sbjct: 118 AAIYLDAGIDVALARVYQWYQELLEQIKPGEAQKDPKTRLQEFLQGHRLKLPEYEVIEIK 177

Query: 182 GPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225
           G  H+  F V  ++  L     G   S+R AEQ AA + +++  I
Sbjct: 178 GDAHNQSFRVSCKVETLTDVVFGQGTSRRKAEQHAAQQAIEKLKI 222


>gi|324993856|gb|EGC25775.1| ribonuclease III [Streptococcus sanguinis SK405]
 gi|325690806|gb|EGD32807.1| ribonuclease III [Streptococcus sanguinis SK115]
 gi|332367146|gb|EGJ44882.1| ribonuclease III [Streptococcus sanguinis SK1059]
          Length = 232

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+   L ++    F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENLK-KALLEQFDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD G+E   +F+ +    +      +   D KT+LQE       V   Y
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPKVEAGDFERVTDYKTKLQELLQINGDVEITY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +V   +GP H   F V V I+G    QG   SK+ AEQ AA    ++
Sbjct: 180 QVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEK 226


>gi|260913782|ref|ZP_05920258.1| ribonuclease III [Pasteurella dagmatis ATCC 43325]
 gi|260632321|gb|EEX50496.1| ribonuclease III [Pasteurella dagmatis ATCC 43325]
          Length = 225

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 114/226 (50%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      L++++GY+F   SLLE+ALTH S S       ERLEFLGD IL L I+  L+
Sbjct: 1   MNK-NLERLQRKLGYSFNQVSLLEQALTHRSAS---INHNERLEFLGDAILNLTIAEALY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+ +L  ++ +     K       SI AD VE
Sbjct: 57  HQFPKCNEGELSRMRATLVREPTLAILARKFELGDYLSLGPGELKSGGFRRESILADCVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD  +      V  ++K     +K G  ++D KT LQE+   K    P Y V 
Sbjct: 117 AIIGAISLDSNLPKTSKIVCNWYKSLLEEIKPGDNQKDPKTRLQEYLQGKRLPLPNYNVV 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H   FTV   +  +     G+  S+R AEQ AA ++L+  
Sbjct: 177 DIKGEAHCQTFTVECYVKNIDRTFIGIGASRRKAEQAAAEKILQLL 222


>gi|206901475|ref|YP_002250663.1| ribonuclease III [Dictyoglomus thermophilum H-6-12]
 gi|206740578|gb|ACI19636.1| ribonuclease III [Dictyoglomus thermophilum H-6-12]
          Length = 237

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 110/221 (49%), Gaps = 5/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNH 62
            S ++++ G +F N++L+ +ALTH S  H     +   +RLEFLGD +L ++I+ +LF  
Sbjct: 17  LSKVKEKTGISFDNKNLIIEALTHPSFKHENPHFEYDNQRLEFLGDAVLNMIITEILFQR 76

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  A EG L+ +   +V  ET  + A+ L+L   I +     K       SI +D+ E+ 
Sbjct: 77  YKEASEGILTQKRIYMVKEETLYKKAKSLNLGDLILLGKGEEKQGGREKISILSDLFEAF 136

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I ALYLD G E    FV++ +++               L +    K G  P Y VT   G
Sbjct: 137 IGALYLDKGYEFTKNFVERIFREEIESVEMEID--WKNLLQSQLMKEGKKPSYIVTREEG 194

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P+H+  F V + I     A+G   +KR AE  AA   L++ 
Sbjct: 195 PEHNKIFYVELWIDNNKIAEGEGKTKREAEIKAAKIALEKM 235


>gi|28899346|ref|NP_798951.1| ribonuclease III [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839958|ref|ZP_01992625.1| ribonuclease III [Vibrio parahaemolyticus AQ3810]
 gi|260365941|ref|ZP_05778431.1| ribonuclease III [Vibrio parahaemolyticus K5030]
 gi|260878963|ref|ZP_05891318.1| ribonuclease III [Vibrio parahaemolyticus AN-5034]
 gi|260898320|ref|ZP_05906816.1| ribonuclease III [Vibrio parahaemolyticus Peru-466]
 gi|31076860|sp|Q87LN9|RNC_VIBPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28807582|dbj|BAC60835.1| ribonuclease III [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746517|gb|EDM57506.1| ribonuclease III [Vibrio parahaemolyticus AQ3810]
 gi|308085245|gb|EFO34940.1| ribonuclease III [Vibrio parahaemolyticus Peru-466]
 gi|308090440|gb|EFO40135.1| ribonuclease III [Vibrio parahaemolyticus AN-5034]
 gi|308113210|gb|EFO50750.1| ribonuclease III [Vibrio parahaemolyticus K5030]
 gi|328474121|gb|EGF44926.1| ribonuclease III [Vibrio parahaemolyticus 10329]
          Length = 225

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LE+++GY F +  L+  ALTH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIDKLERKLGYQFKDAGLINLALTHRSA---NSKHNERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  IE   + V  ++  R         ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDIEKVRSIVLSWYNSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222


>gi|73667460|ref|YP_303476.1| ribonuclease III [Ehrlichia canis str. Jake]
 gi|90101626|sp|Q3YQX7|RNC_EHRCJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|72394601|gb|AAZ68878.1| RNAse III [Ehrlichia canis str. Jake]
          Length = 226

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 85/221 (38%), Positives = 122/221 (55%), Gaps = 2/221 (0%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             T+ K I Y F N  LL +ALTH SI    S + +YERLEFLGD +L ++IS +LFN F
Sbjct: 2   IETISKTIKYHFKNPQLLHEALTHPSIISKDSLKFNYERLEFLGDAVLNIVISEMLFNIF 61

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+ +  +LV      +VA+ ++L  FI +S   R    +   +   + +E+LI
Sbjct: 62  PKDTEGNLAKKKTALVCGNQLVKVAQSINLGQFIIMSDGERTCGGANNHNNLENALEALI 121

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG+  A  F+  +WK  A+      +DAKT LQE+   K    P Y +  +SGP
Sbjct: 122 GAIYLDGGLTAAQNFIHSFWKHTAIHMDIPPQDAKTILQEFIQGKRLPAPTYHIIDKSGP 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH+P FTV + I      Q    +K+ AEQ AA+ +L +  
Sbjct: 182 DHNPIFTVELRIPLYKTIQATGNNKKLAEQKAASLMLNQIK 222


>gi|125718368|ref|YP_001035501.1| ribonuclease III [Streptococcus sanguinis SK36]
 gi|189043368|sp|A3CP46|RNC_STRSV RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|125498285|gb|ABN44951.1| Ribonuclease III, putative [Streptococcus sanguinis SK36]
 gi|324994823|gb|EGC26736.1| ribonuclease III [Streptococcus sanguinis SK678]
 gi|325687264|gb|EGD29286.1| ribonuclease III [Streptococcus sanguinis SK72]
 gi|325694850|gb|EGD36755.1| ribonuclease III [Streptococcus sanguinis SK150]
 gi|332358679|gb|EGJ36502.1| ribonuclease III [Streptococcus sanguinis SK355]
 gi|332358950|gb|EGJ36771.1| ribonuclease III [Streptococcus sanguinis SK49]
          Length = 232

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+   L ++    F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENLK-KALLEQFDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD G+E   +F+ +    +      +   D KT+LQE       V   Y
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPKVEAGDFERVTDYKTKLQELLQINGDVEIAY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +V   +GP H   F V V I+G    QG   SK+ AEQ AA    ++
Sbjct: 180 QVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEK 226


>gi|297379862|gb|ADI34749.1| ribonuclease III [Helicobacter pylori v225d]
          Length = 238

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 115/224 (51%), Gaps = 4/224 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ 
Sbjct: 14  NSSYATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 71

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LS    S+VS    +++A+ + L  ++RVSS           SI +   E+L
Sbjct: 72  FYQYDEGKLSKLRASIVSTHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEAL 131

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +A +YL+ G+      +     +   +        D KT LQE   A+F V P Y++   
Sbjct: 132 MAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 191

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GPDH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 192 KGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 235


>gi|237752001|ref|ZP_04582481.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430]
 gi|229376568|gb|EEO26659.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430]
          Length = 223

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 4/223 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +     EK +GY F  ++LL++ALTH S         ERLEFLGD +L L+I   L+N F
Sbjct: 2   VNLKHFEKTLGYHFKAQNLLKEALTHKSAKKGT--HNERLEFLGDAVLDLIIGEFLYNKF 59

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +++EGELS    S+V+ +  +++AR L++  ++ +S+   ++      SI ++  E++I
Sbjct: 60  PNSREGELSKMRASMVNEKAFAKIARYLNIGEYLFISNSEEQNNGRKKDSILSNAFEAVI 119

Query: 124 AALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YL+ G+++A   +         ++       D KT LQE   AKFG TPEY +   S
Sbjct: 120 GAIYLESGLDIARNLMHNLLSAVYPSIDLNSLFYDHKTALQELTQAKFGETPEYVLLDSS 179

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GPDH+  F + V+I G   A+    SK+ A+Q+ A   ++   
Sbjct: 180 GPDHNKNFLIGVKIQGKEFAKASGKSKKEAQQICAKIAIEALK 222


>gi|163738238|ref|ZP_02145654.1| 4'-phosphopantetheinyl transferase [Phaeobacter gallaeciensis
           BS107]
 gi|161388854|gb|EDQ13207.1| 4'-phosphopantetheinyl transferase [Phaeobacter gallaeciensis
           BS107]
          Length = 228

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 87/224 (38%), Positives = 132/224 (58%), Gaps = 1/224 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +      E RIGY+F+  +LL +ALTH+S+S   ++  +RLEFLGDR+LGL+++T L
Sbjct: 1   MKLSKDMRAFETRIGYSFSQPALLVRALTHASVSSPNRQDNQRLEFLGDRVLGLVMATAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
            +   +A EG+L+ RFN+LV  ETC+ VAR++DL + +++             ++  D +
Sbjct: 61  LDTDKAATEGQLAPRFNALVRKETCADVARDIDLGAVLKLGRSETMSGGRRKLALLGDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+Y DGG + A   + + W  R  +     RD KT LQE+A A+    P Y +  
Sbjct: 121 EAVIAAVYKDGGFDAAQELILRLWGNRIGRVEADARDPKTTLQEFAQARGEQPPAYVLVE 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           R+GPDH P FT+ V++      +    SKR AEQ AA  +L R 
Sbjct: 181 RTGPDHQPEFTISVQLQDGTEGRATAGSKRQAEQAAAKFLLARL 224


>gi|325696125|gb|EGD38016.1| ribonuclease III [Streptococcus sanguinis SK160]
          Length = 232

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+   L ++    FA+ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENLK-KALLEQFDLVFADETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD G+E   +F+ +    +      +   D KT+LQE       V   Y
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPKVEAGDFERVTDYKTKLQELLQINGDVEIAY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +V   +GP H   F V V I+G    QG   SK+ AEQ AA    ++
Sbjct: 180 QVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEK 226


>gi|304404216|ref|ZP_07385878.1| ribonuclease III [Paenibacillus curdlanolyticus YK9]
 gi|304347194|gb|EFM13026.1| ribonuclease III [Paenibacillus curdlanolyticus YK9]
          Length = 232

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 111/228 (48%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M       L++R+   F    LL +A TH+S  + ++    E  ERLEFLGD +L LL+S
Sbjct: 1   MRHDALDQLQQRLLIRFRQPRLLRQAFTHTSYVNEHRGKPIEDNERLEFLGDAVLQLLVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  + +  EGEL+    S+V   + ++ A  L L + + +     +       ++ A
Sbjct: 61  EHLFLTYPNRPEGELTRMRASIVCEPSLARFADLLGLGACVLLGRGEEQLGGRHRPALLA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + A+YLD G++    F+ +    +  ++G    +D K++LQE A      T EY
Sbjct: 121 DLFEAFVGAVYLDQGLDRVRLFLTERIFPQIEENGSLLVKDFKSKLQEKAQHGTLGTVEY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++    GP HD  F V V I       G+  +K+ AEQ +A     + 
Sbjct: 181 RIAEERGPAHDREFVVEVRIGDQPYGIGVGRTKKEAEQRSAEAACLKL 228


>gi|317178975|dbj|BAJ56763.1| ribonuclease III [Helicobacter pylori F30]
          Length = 232

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 116/231 (50%), Gaps = 9/231 (3%)

Query: 1   MSALR-----YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55
           M   R     Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I
Sbjct: 1   MKNKRSQNSPYITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVI 58

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
             LL++ F    EG+LS    S+VS    +++A+ + L  ++RVSS           SI 
Sbjct: 59  GELLYHKFYQYDEGKLSKLRASIVSTHGFTKLAKVIALQDYLRVSSSEEISKGREKPSIL 118

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTP 173
           +   E+L+A +YL+ G+      +     +   +        D KT LQE   A+F V P
Sbjct: 119 SSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIP 178

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            Y++    GPDH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 179 TYQLLKEKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 229


>gi|57234229|ref|YP_181741.1| ribonuclease III [Dehalococcoides ethenogenes 195]
 gi|90101623|sp|Q3Z7Q8|RNC_DEHE1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|57224677|gb|AAW39734.1| ribonuclease III [Dehalococcoides ethenogenes 195]
          Length = 237

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLL 59
           L  + LEK +G  F N SLLE+AL H+S  +          ER+EFLGD +LG++ +  L
Sbjct: 2   LDLTELEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRL 61

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F   +EG+L+   + LV  E+  +VA  ++L  ++ +          F  +  A   
Sbjct: 62  YHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDASKGRFKPANLAGAF 121

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177
           E+++AA+YLD GI+     + + +K    +        D K+ LQE   A+F +TP Y++
Sbjct: 122 EAVLAAIYLDKGIDATREVIFRLFKTEMERVQTLSSNIDYKSRLQELVQAQFQLTPRYRI 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              SGP+H+  F   V       A+G   SK+ AE  AA E L++
Sbjct: 182 IDFSGPEHNHLFIAEVYTEDKVLAEGSGRSKKEAETSAAKEALQQ 226


>gi|50913818|ref|YP_059790.1| ribonuclease III [Streptococcus pyogenes MGAS10394]
 gi|56808931|ref|ZP_00366639.1| COG0571: dsRNA-specific ribonuclease [Streptococcus pyogenes M49
           591]
 gi|139474237|ref|YP_001128953.1| ribonuclease III [Streptococcus pyogenes str. Manfredo]
 gi|209559002|ref|YP_002285474.1| ribonuclease III [Streptococcus pyogenes NZ131]
 gi|255591218|ref|XP_002535468.1| ribonuclease III, putative [Ricinus communis]
 gi|306827819|ref|ZP_07461089.1| ribonuclease III [Streptococcus pyogenes ATCC 10782]
 gi|73917584|sp|Q5XDA6|RNC_STRP6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043367|sp|A2RFW8|RNC_STRPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741379|sp|B5XKB7|RNC_STRPZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|50902892|gb|AAT86607.1| Ribonuclease III [Streptococcus pyogenes MGAS10394]
 gi|134272484|emb|CAM30747.1| ribonuclease III [Streptococcus pyogenes str. Manfredo]
 gi|209540203|gb|ACI60779.1| Ribonuclease III [Streptococcus pyogenes NZ131]
 gi|223523016|gb|EEF26915.1| ribonuclease III, putative [Ricinus communis]
 gi|304429989|gb|EFM33028.1| ribonuclease III [Streptococcus pyogenes ATCC 10782]
          Length = 230

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 114/226 (50%), Gaps = 9/226 (3%)

Query: 7   STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             LE+ +       F + +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  
Sbjct: 2   KQLEELLSTSFDIQFNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  +    EG++S   + +V  E+ +  +R     ++I++     K       +I  D+
Sbjct: 62  LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDL 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ + AL LD GI+    F+ +    +  K + +  +D KT LQE+   K  V  +Y+V
Sbjct: 122 FEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQTKGDVVIDYQV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP H  +F V + ++G   ++G+  SK+ AEQ AA   L + 
Sbjct: 182 ISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQL 227


>gi|71903092|ref|YP_279895.1| ribonuclease III [Streptococcus pyogenes MGAS6180]
 gi|90101651|sp|Q48UR6|RNC_STRPM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71802187|gb|AAX71540.1| ribonuclease III [Streptococcus pyogenes MGAS6180]
          Length = 230

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 114/226 (50%), Gaps = 9/226 (3%)

Query: 7   STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             LE+ +       F + +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  
Sbjct: 2   KQLEELLSTSFDIQFNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  +    EG++S   + +V  E+ +  +R     ++I++     K       +I  D+
Sbjct: 62  LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDL 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ + AL LD GI+    F+ +    +  K + +  RD KT LQE+   K  V  +Y+V
Sbjct: 122 FEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVRDYKTCLQEFLQTKGDVAIDYQV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP H  +F V + ++G   ++G+  SK+ AEQ AA   L + 
Sbjct: 182 ISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQL 227


>gi|91201952|emb|CAJ75012.1| similar to ribonuclease III [Candidatus Kuenenia stuttgartiensis]
          Length = 236

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 86/224 (38%), Positives = 126/224 (56%), Gaps = 3/224 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  ++   +  IGY+F    LLEKALTH+S       S ERLEFLGD +LG++IS  L+ 
Sbjct: 9   NPEKFIACQNIIGYSFKKMLLLEKALTHTSCRVENNFSNERLEFLGDAVLGMIISDYLYK 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EGEL+   + +VS  T ++V  E  L  F+ V   L      F  S+ A+V E+
Sbjct: 69  TMPHYSEGELTNVKSVVVSQSTLAKVGMEAGLKEFLLVGRGLNDRDL-FPKSLLANVFEA 127

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LIAA+Y+DGGIE A  F  +Y K+        + +++ K+ LQ+++  ++G+TP Y++  
Sbjct: 128 LIAAIYIDGGIEAASEFTLRYLKKEIDLVCKNQHKKNYKSILQQYSQKEYGITPTYRLLQ 187

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           + GPDH   F +VV I G    +G   SK+ AEQ AA E LK  
Sbjct: 188 QIGPDHGKSFEIVVSIKGSEYGRGWGKSKKEAEQSAAKEALKIL 231


>gi|15674631|ref|NP_268805.1| ribonuclease III [Streptococcus pyogenes M1 GAS]
 gi|19745653|ref|NP_606789.1| ribonuclease III [Streptococcus pyogenes MGAS8232]
 gi|21909911|ref|NP_664179.1| ribonuclease III [Streptococcus pyogenes MGAS315]
 gi|28896390|ref|NP_802740.1| ribonuclease III [Streptococcus pyogenes SSI-1]
 gi|71910251|ref|YP_281801.1| ribonuclease III [Streptococcus pyogenes MGAS5005]
 gi|94988068|ref|YP_596169.1| ribonuclease III [Streptococcus pyogenes MGAS9429]
 gi|94991954|ref|YP_600053.1| ribonuclease III [Streptococcus pyogenes MGAS2096]
 gi|94993854|ref|YP_601952.1| ribonuclease III [Streptococcus pyogenes MGAS10750]
 gi|54039244|sp|P66671|RNC_STRP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54039245|sp|P66672|RNC_STRP8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54041616|sp|P66670|RNC_STRP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043363|sp|Q1JCZ9|RNC_STRPB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043364|sp|Q1JMX4|RNC_STRPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043366|sp|Q1J7V3|RNC_STRPF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|13621744|gb|AAK33526.1| putative ribonuclease III [Streptococcus pyogenes M1 GAS]
 gi|19747784|gb|AAL97288.1| putative ribonuclease III [Streptococcus pyogenes MGAS8232]
 gi|21904099|gb|AAM78982.1| putative ribonuclease III [Streptococcus pyogenes MGAS315]
 gi|28811641|dbj|BAC64573.1| putative ribonuclease III [Streptococcus pyogenes SSI-1]
 gi|71853033|gb|AAZ51056.1| ribonuclease III [Streptococcus pyogenes MGAS5005]
 gi|94541576|gb|ABF31625.1| ribonuclease III [Streptococcus pyogenes MGAS9429]
 gi|94545462|gb|ABF35509.1| Ribonuclease III [Streptococcus pyogenes MGAS2096]
 gi|94547362|gb|ABF37408.1| Ribonuclease III [Streptococcus pyogenes MGAS10750]
          Length = 230

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 114/226 (50%), Gaps = 9/226 (3%)

Query: 7   STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             LE+ +       F + +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  
Sbjct: 2   KQLEELLSTSFDIQFNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  +    EG++S   + +V  E+ +  +R     ++I++     K       +I  D+
Sbjct: 62  LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDL 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ + AL LD GI+    F+ +    +  K + +  +D KT LQE+   K  V  +Y+V
Sbjct: 122 FEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQTKGDVAIDYQV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP H  +F V + ++G   ++G+  SK+ AEQ AA   L + 
Sbjct: 182 ISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQL 227


>gi|218132444|ref|ZP_03461248.1| hypothetical protein BACPEC_00303 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992554|gb|EEC58556.1| hypothetical protein BACPEC_00303 [Bacteroides pectinophilus ATCC
           43243]
          Length = 234

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 7/228 (3%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLI 55
           M+ +   + L++ +GY+F + SLL+ ALTHSS ++  +     + ERLEFLGD +L L+ 
Sbjct: 7   MNHSTDLNELQQAMGYSFDDVSLLKHALTHSSYANELRINKTGNNERLEFLGDAVLELVS 66

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  LFN      EG LS    S+V   + +  AR++ L  +I +             SI 
Sbjct: 67  SEYLFNEHKDVNEGSLSKLRASMVCEPSLAFCARDISLQKYIMLGKGEDATGGRQRDSIT 126

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           +D +E++I A+YLDGG E A  F+  +          F       + +        TPEY
Sbjct: 127 SDALEAVIGAIYLDGGFEPAKKFIMAHVLNDLDNKKLFYDS--KTILQEILQADNKTPEY 184

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++T   GP+H   F+  V         G   +K+AAEQ AA + + R 
Sbjct: 185 RITGEEGPEHSKTFSAEVLDGSTVLGHGSGHNKKAAEQQAAYDAILRL 232


>gi|260886608|ref|ZP_05897871.1| ribonuclease III [Selenomonas sputigena ATCC 35185]
 gi|330839558|ref|YP_004414138.1| ribonuclease III [Selenomonas sputigena ATCC 35185]
 gi|260863751|gb|EEX78251.1| ribonuclease III [Selenomonas sputigena ATCC 35185]
 gi|329747322|gb|AEC00679.1| ribonuclease III [Selenomonas sputigena ATCC 35185]
          Length = 242

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 109/225 (48%), Gaps = 6/225 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
              L   +G  F N  LL +ALTH+S ++  +       ERLEFLGD +L L  ST LF 
Sbjct: 16  LIELSDHLGIEFQNIVLLHEALTHTSYANEAKNKGVVHNERLEFLGDAVLELATSTYLFE 75

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F +  EGEL+    S+V   T S+ A EL+L  ++ +             S+ AD  E+
Sbjct: 76  RFPNRPEGELTKARASIVREATLSRRAAELELGEYLLLGHGEASMGGGHRPSMLADAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A+YLD G + A  +V K        + SG+  +D KT LQE           Y++  
Sbjct: 136 VIGAIYLDRGWQTAYDYVLKQLHDELLTIDSGENMKDYKTTLQEVVQKHVDSKIAYELLT 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            +GPDHD  F   V I+      G   +K+ AEQ AA E L++  
Sbjct: 196 ETGPDHDKTFEFAVRINDAVYGTGKGRNKKEAEQGAAREALRKMK 240


>gi|94989948|ref|YP_598048.1| ribonuclease III [Streptococcus pyogenes MGAS10270]
 gi|189043365|sp|Q1JI19|RNC_STRPD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|94543456|gb|ABF33504.1| Ribonuclease III [Streptococcus pyogenes MGAS10270]
          Length = 230

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 9/226 (3%)

Query: 7   STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             LE+ +       F + +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  
Sbjct: 2   KQLEELLSTSFDIQFNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  +    EG++S   + +V  E+ +  +R     ++I++     K       +I  D+
Sbjct: 62  LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDL 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ + AL LD GI+    F+ +    +  K + +  +D KT LQE+  AK  V  +Y+V
Sbjct: 122 FEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQAKGDVVIDYQV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP H  +F V + ++G   ++G+  SK+ AEQ AA   L + 
Sbjct: 182 ISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQL 227


>gi|224438391|ref|ZP_03659318.1| ribonuclease III [Helicobacter cinaedi CCUG 18818]
 gi|313144833|ref|ZP_07807026.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818]
 gi|313129864|gb|EFR47481.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818]
          Length = 242

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 4/221 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LEK++GY F ++ LL +ALTH S  ++Y  + ERLEFLGD +L LL+   LF  F 
Sbjct: 9   NAQALEKKLGYTFKDKKLLLEALTHKSCKNAY--NNERLEFLGDAVLDLLVGEFLFRKFP 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           SAKEGELS     +V+ +   ++A+ LDL +F+ +S     +      SI ++  E+L+ 
Sbjct: 67  SAKEGELSKLRACIVNEKGFMKLAKSLDLGAFLHISQSEEHNKGREKASILSNAFEALMG 126

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL+  +      V K  +Q   K        D KT LQE   A FG  P Y +   SG
Sbjct: 127 AIYLESELTFLKDIVLKLLEQNYAKIDLRSLFTDYKTALQELTQAIFGEIPTYTLVSESG 186

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH   F + + ++G+  A+    SK+ A+Q +A    ++ 
Sbjct: 187 PDHQKSFEIALSVNGVEYARAKGSSKKDAQQKSAQIAYEKI 227


>gi|188527489|ref|YP_001910176.1| ribonuclease III [Helicobacter pylori Shi470]
 gi|238691923|sp|B2UTG4|RNC_HELPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|188143729|gb|ACD48146.1| ribonuclease III [Helicobacter pylori Shi470]
          Length = 238

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 115/221 (52%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 17  YATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 74

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++ +SS           SI +   E+L+A 
Sbjct: 75  YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLHISSSEEISNGREKPSILSSAFEALMAG 134

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +   +        D KT LQE   A+F V P Y++    GP
Sbjct: 135 VYLEAGLAKVQKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGP 194

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 195 DHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 235


>gi|261839511|gb|ACX99276.1| ribonuclease III [Helicobacter pylori 52]
          Length = 239

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 115/224 (51%), Gaps = 4/224 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ 
Sbjct: 15  NSSYITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 72

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LS    ++VSA   +++A+ + L  ++RVSS           SI +   E+L
Sbjct: 73  FYQYDEGKLSKLRAAIVSAHGFTKLAKIIALQDYLRVSSSEEISNGREKPSILSSAFEAL 132

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +A +YL+ G+      +     +   +        D KT LQE   A+F V P Y++   
Sbjct: 133 MAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 192

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GPDH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 193 KGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 236


>gi|7531276|sp|P56118|RNC_HELPY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 239

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ 
Sbjct: 15  NSSYTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 72

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L
Sbjct: 73  FYQYDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEAL 132

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +A +YL+ G+      +     +   +        D KT LQE   A+F V P Y++   
Sbjct: 133 MAGVYLEAGLAKVQKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 192

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GPDH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 193 KGPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLK 236


>gi|332673509|gb|AEE70326.1| ribonuclease III [Helicobacter pylori 83]
          Length = 239

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ 
Sbjct: 15  NSSYITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 72

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L
Sbjct: 73  FYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEAL 132

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +A +YL+ G+            +   +        D KT LQE   A+F V P Y++   
Sbjct: 133 MAGVYLEAGLAKVRKITQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 192

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GPDH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 193 KGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 236


>gi|291533418|emb|CBL06531.1| RNAse III [Megamonas hypermegale ART12/1]
          Length = 240

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 6/228 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLL 59
             +   L  R+G  F + +LL +ALTH+S ++  ++     ERLEFLGD +L L  ST L
Sbjct: 8   KQKLGELVVRLGVKFNDLNLLNQALTHTSYANEAKDHSLHNERLEFLGDAVLELASSTYL 67

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F    EGE++    S+V   + +++A  L++  ++ +    R        SI AD  
Sbjct: 68  FKTFTQMPEGEMTKARASVVCETSLAKLAMNLNVGQYLLLGKGERLTGGEHRPSILADAF 127

Query: 120 ESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ES+I A+YLD G + A  +V     ++       +       + +      G   EYK+ 
Sbjct: 128 ESIIGAIYLDQGWQTAYEYVLDKLNEEFIAVKYGYNLKDYKTILQEVVQAKGQHVEYKLL 187

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
             +GPDH   F   V +      +G   +K+ AEQ AA E LK+  IW
Sbjct: 188 AETGPDHAKTFEFAVVVDKKIDGKGKGTTKKEAEQHAAYEALKK--IW 233


>gi|327470651|gb|EGF16107.1| ribonuclease III [Streptococcus sanguinis SK330]
          Length = 232

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+   L ++    F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENLK-KALLEQFDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD G+E   +F+ +    +      +   D KT+LQE       V   Y
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPKVEAGDFERVTDYKTKLQELLQINGDVEIAY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +V   +GP H   F V V I+G    QG   SK+ AEQ AA    K+
Sbjct: 180 QVVSETGPAHAKNFEVAVLINGCKSGQGQGRSKKLAEQEAAKNAFKK 226


>gi|163740176|ref|ZP_02147570.1| ribonuclease III [Phaeobacter gallaeciensis 2.10]
 gi|161386034|gb|EDQ10409.1| ribonuclease III [Phaeobacter gallaeciensis 2.10]
          Length = 228

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 87/224 (38%), Positives = 131/224 (58%), Gaps = 1/224 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +      E RIGY+F+  +LL +ALTH+S+S   ++  +RLEFLGDR+LGL+++T L
Sbjct: 1   MKLSKDMRAFETRIGYSFSQPALLVRALTHASVSSPNRQDNQRLEFLGDRVLGLVMATAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
            +   +A EG+L+ RFN+LV  ETC+ VAR++DL + +++             ++  D +
Sbjct: 61  LDTDKAATEGQLAPRFNALVRKETCADVARDIDLGAVLKLGRSETMSGGRRKLALLGDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+Y DGG + A   + + W  R  +     RD KT LQE+A A+    P Y +  
Sbjct: 121 EAVIAAVYKDGGFDAAQELILRLWGNRIGRVEADARDPKTTLQEFAQARGEQPPAYVLVE 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           R GPDH P FT+ V++      +    SKR AEQ AA  +L R 
Sbjct: 181 RKGPDHQPEFTISVQLQDGTEGRATAGSKRQAEQAAAKFLLARL 224


>gi|255281054|ref|ZP_05345609.1| ribonuclease III [Bryantella formatexigens DSM 14469]
 gi|255268502|gb|EET61707.1| ribonuclease III [Bryantella formatexigens DSM 14469]
          Length = 230

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 111/220 (50%), Gaps = 5/220 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           MS    S LE+  GY+F ++ LLE AL HSS ++ +++      ERLEFLGD +L L  S
Sbjct: 1   MSR-DISELEQMTGYSFKDKELLENALRHSSYANEHKKYHLKDNERLEFLGDAVLELSSS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ H+   KEGE++    S+V   T +Q A  ++L SF+R+     +       S+ +
Sbjct: 60  EYLYRHYPKMKEGEMTKLRASIVCEPTLAQCAAAIELGSFLRLGRGEEQTGGRHRDSVVS 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LI A++LDGG   A  FV+++          F        +    +  G    Y 
Sbjct: 120 DAMEALIGAIFLDGGFTSAKEFVNRFILNGVEHKKLFFDSKTILQEIVQSSYKGEAMSYH 179

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           +    GP+HD  F V + I      +G   +K++AEQ AA
Sbjct: 180 LLREEGPEHDKTFVVQLFIGDKGFEEGRGRTKKSAEQEAA 219


>gi|315586658|gb|ADU41039.1| ribonuclease III [Helicobacter pylori 35A]
          Length = 238

 Score =  146 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 4/224 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ 
Sbjct: 14  NSSYITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 71

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L
Sbjct: 72  FYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEAL 131

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +A +YL+ G+      +     +   +        D KT LQE   A+F V P Y++   
Sbjct: 132 MAGVYLEAGLAKVCKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 191

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GPDH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 192 KGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 235


>gi|83644632|ref|YP_433067.1| ribonuclease III [Hahella chejuensis KCTC 2396]
 gi|123534042|sp|Q2SL32|RNC_HAHCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|83632675|gb|ABC28642.1| ribonuclease III [Hahella chejuensis KCTC 2396]
          Length = 226

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   L++ +GY F   +LL  ALTH S       + ERLEFLGD +L  +I+  LF  F+
Sbjct: 4   KLERLQRALGYTFKEPALLTLALTHRSFG---GRNNERLEFLGDSVLNFIIADYLFGRFE 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A+EG+LS     +V   T +++ARE DL  ++R+ S   K       SI AD +ES+I 
Sbjct: 61  EAREGQLSRLRARMVKGVTLAEIAREFDLGEYLRLGSGEMKSGGFRRESILADALESIIG 120

Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G EV           + + L     ++D+KT LQE+  A+    P Y+V    G
Sbjct: 121 AIYLDAGFEVCADRVLNWFEARLQKLNLKDTQKDSKTRLQEYLQARQLNLPRYEVISVQG 180

Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225
             H   F V  EI GL+ A +G   S+R AEQ AA + L   G+
Sbjct: 181 EAHAQTFHVRCEIDGLSDATEGTGSSRRVAEQKAAKQALLALGV 224


>gi|296133569|ref|YP_003640816.1| ribonuclease III [Thermincola sp. JR]
 gi|296032147|gb|ADG82915.1| ribonuclease III [Thermincola potens JR]
          Length = 245

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 109/227 (48%), Gaps = 7/227 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +   L   +G  + +  LL  ALTHSS +H  +    E  +RLEFLGD +L L+IS  L+
Sbjct: 9   KIDELIGVMGIDWTSPELLVTALTHSSYAHENKREPIEHNQRLEFLGDAVLELVISEYLY 68

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F +  EG L+     +V   + + VAR ++L  +I +     +       SI AD +E
Sbjct: 69  DRFPTYPEGVLTKMRAGIVCESSLASVARAMNLGQYILMGKGEERSGGRNRPSILADAME 128

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKV 177
           ++  A+YLD G+E    F+     ++  K         D KTELQE    K   T  Y +
Sbjct: 129 AIFGAVYLDQGLETTKLFIINTLSEQISKVVAKGGQTGDYKTELQELVQQKADNTLTYAI 188

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               GPDH+  FT  V   G     G   +K+ AEQ AA + L++  
Sbjct: 189 IGEEGPDHNKVFTAGVYCHGKIWGVGKGRTKKEAEQAAAHDALEKIK 235


>gi|322385039|ref|ZP_08058689.1| ribonuclease III [Streptococcus cristatus ATCC 51100]
 gi|321270949|gb|EFX53859.1| ribonuclease III [Streptococcus cristatus ATCC 51100]
          Length = 229

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 111/227 (48%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+   L ++ G  F + SLLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MEQLK-DALLEQFGLVFEDSSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD  +E    F+ +    +      +   D KT+LQE       V   Y
Sbjct: 120 DLFEAFLGALLLDKDVETVKAFIYQVMIPKVEAGDFEQVTDYKTKLQELLQVNGDVEIVY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +VT  +GP H   F V V I+G    QG   SK+ AEQ AA +  ++
Sbjct: 180 QVTDETGPAHAKNFAVAVLINGQKAGQGQGRSKKLAEQEAAKDAFEK 226


>gi|58617572|ref|YP_196771.1| ribonuclease III [Ehrlichia ruminantium str. Gardel]
 gi|75432734|sp|Q5FGH0|RNC_EHRRG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|58417184|emb|CAI28297.1| Ribonuclease III [Ehrlichia ruminantium str. Gardel]
          Length = 227

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 83/220 (37%), Positives = 124/220 (56%), Gaps = 2/220 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + + K I Y F N  LL +ALTH S+    +   +YERLEFLGD +L L++S +LFN F 
Sbjct: 4   NAISKIIKYDFKNTQLLNEALTHPSVLSKDNNNFNYERLEFLGDAVLNLVVSEMLFNIFP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+ +  +LV      ++A+ ++L  FI +S   R    +  ++   + +E+LI 
Sbjct: 64  YDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIG 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG++ A  F+  +WK  A       +DAKT LQEWA +K    P Y +  +SGPD
Sbjct: 124 AIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPD 183

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H+P FTV V I+          +K+ AEQ AA+ +L +  
Sbjct: 184 HNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAKIN 223


>gi|319939366|ref|ZP_08013726.1| ribonuclease 3 [Streptococcus anginosus 1_2_62CV]
 gi|319811352|gb|EFW07647.1| ribonuclease 3 [Streptococcus anginosus 1_2_62CV]
          Length = 232

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 5/219 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L ++ G  F +  LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  + 
Sbjct: 8   LSQQFGIVFQDEKLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLISEYLYKKYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS   +++V  E+ +  +R+     FI++     K       +I  D+ E+ + 
Sbjct: 68  KKPEGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AL LD G+E    F+ +    +      +   D KT+LQE       V   Y+V   SGP
Sbjct: 128 ALLLDKGVEAVKNFLYQVMIPKVEVGDFEQVVDYKTKLQELLQVNGDVEIVYQVISESGP 187

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            H   F V V + G    QG   SK+ AEQ AA    ++
Sbjct: 188 AHAKEFAVAVSVDGRTVGQGQGRSKKLAEQEAAKNAFEK 226


>gi|268680594|ref|YP_003305025.1| ribonuclease III [Sulfurospirillum deleyianum DSM 6946]
 gi|268618625|gb|ACZ12990.1| ribonuclease III [Sulfurospirillum deleyianum DSM 6946]
          Length = 227

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   L+KR+GY F N++L+ +ALTH S       + ERLEFLGD +L L++   L+  F 
Sbjct: 4   KLEALQKRLGYQFKNQNLIIEALTHKS--SKQPYNNERLEFLGDAVLDLIVGEYLYKEFL 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGELS    SLV+ ++  ++AR L L   I +S     +      S+ ++  E++I 
Sbjct: 62  GVAEGELSKLRASLVNEKSFEKLARLLHLGESIYISLAEENNNGREKPSLLSNAFEAIIG 121

Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYL+ G+E A T      ++           RD KT LQE   A FGVTPEY++    G
Sbjct: 122 ALYLEAGLEKARTLAISLLEEAYPKIDMDAIFRDHKTTLQELTQAHFGVTPEYRLVRSFG 181

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH   F + V + G   +     SK+ A+Q AA   L+   
Sbjct: 182 PDHQKEFEIAVSVRGSDLSLASGKSKKEAQQKAALLALEILK 223


>gi|308182848|ref|YP_003926975.1| ribonuclease III [Helicobacter pylori PeCan4]
 gi|308065033|gb|ADO06925.1| ribonuclease III [Helicobacter pylori PeCan4]
          Length = 239

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA+  +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAQGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +   +        D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPIYQLLKEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLK 236


>gi|312897519|ref|ZP_07756939.1| ribonuclease III [Megasphaera micronuciformis F0359]
 gi|310621371|gb|EFQ04911.1| ribonuclease III [Megasphaera micronuciformis F0359]
          Length = 238

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 10/234 (4%)

Query: 1   MSALR---YSTLEKRIGY-AFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILG 52
           M+  R        KR+    F +  LL++ALTHSS ++     +    ERLEFLGD +L 
Sbjct: 1   MNKARREQLRNFTKRLNIGPFTDWHLLDQALTHSSYTNEDKTHHSMHNERLEFLGDAVLD 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           +++   L+  +    EG L+    S+VS E  + V     +  ++R+             
Sbjct: 61  MVVGEYLYRRYPDMPEGNLTKARASIVSEEPLACVCAGFHMGDYLRLGKGEALTGGRTRN 120

Query: 113 SIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
           SI AD  E+++ A+Y+D                  + ++ G + +D KT  QE       
Sbjct: 121 SIMADAFEAVVGAIYMDCSYSAARDFILTQLERYLQLVEKGIYGKDYKTYFQELLQRDGA 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              +Y +    GPDH+  F + V ++G     G   +K++AEQ AA   L++  
Sbjct: 181 QDIKYHLCHEEGPDHNKTFFMEVIVNGTTMGMGSGKTKKSAEQHAAYAALEKMN 234


>gi|319758292|gb|ADV70234.1| dsRNA-specific ribonuclease [Streptococcus suis JS14]
          Length = 228

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 6/229 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L ++ L    G  F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MKDL-HAKLLDDFGIDFSDLNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLMIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EGE+S   ++ V  E+ +  +R      F+R+     K       +I  
Sbjct: 60  KYLYQKYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD G +    F+ K    R    + +   D KT LQE       +   Y
Sbjct: 120 DAFEAFLGALLLDKGEKTVEEFIHKVMIPRLEKGNFERVTDYKTALQEILQVNGEIAISY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +V   SGP HD  F V V        +G   SK+ AEQ AA   ++  G
Sbjct: 180 QVIAESGPAHDKTFEVEVSADQRVIGRGRGRSKKLAEQAAAKNAVEARG 228


>gi|154173754|ref|YP_001409228.1| ribonuclease III [Campylobacter curvus 525.92]
 gi|189043298|sp|A7H186|RNC_CAMC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|112803490|gb|EAU00834.1| ribonuclease III [Campylobacter curvus 525.92]
          Length = 223

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 113/226 (50%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       L+K +GY F N  LL +ALTH S       S ERLEFLGD ++ L++   LF
Sbjct: 1   MK--DLENLQKLLGYEFENTKLLNEALTHKS--TKLPYSNERLEFLGDAVMDLIVGEYLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV+ ++ + +AR L +  FI +S+    +      S+ +D  E
Sbjct: 57  KKFSKTNEGDMSKLRAALVNEKSFANMARHLQIGEFIHLSTAEANNGGREKASLLSDAFE 116

Query: 121 SLIAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+YL+ G++       +        +      +D KT LQE   A  G TP Y++ 
Sbjct: 117 AVMGAVYLEAGLDKVREIAVRLLEICYPKIDFSHLVKDYKTALQEITQASLGTTPIYELV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDH   F + + ++    ++ +  SK+ A+Q+AA   L++  
Sbjct: 177 RSFGPDHKKEFEIALLLNDKEISRAIANSKKEAQQMAAKIALEKMK 222


>gi|153954021|ref|YP_001394786.1| ribonuclease III [Clostridium kluyveri DSM 555]
 gi|219854635|ref|YP_002471757.1| hypothetical protein CKR_1292 [Clostridium kluyveri NBRC 12016]
 gi|189043304|sp|A5N807|RNC_CLOK5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807246|sp|B9E1G8|RNC_CLOK1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|146346902|gb|EDK33438.1| Hypothetical protein CKL_1396 [Clostridium kluyveri DSM 555]
 gi|219568359|dbj|BAH06343.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 244

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 5/229 (2%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57
           M  + +   +EK +  +F ++ L++ ALTHSS ++  +  +  ER+EFLGD +L L IS 
Sbjct: 1   MEKVNFFEEVEKTLNISFNDKELIDTALTHSSYANGKKGVKFNERMEFLGDSVLQLCISE 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  + S  EGEL+ + + +V   +  +VA++ ++  +I++S           TSI A+
Sbjct: 61  YLFLIYKSKSEGELTKKRSLIVCENSLYEVAKKWNIGKYIKMSKGEEITGGRERTSILAN 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEY 175
            VE++IAA+Y+D G +    F+   +K    K+ K +   D KT LQE       +  EY
Sbjct: 121 CVEAIIAAIYIDSGYKKTKQFIIDNFKDIIEKAIKNQIVLDYKTNLQEIVQQDGDIHIEY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            +    GP H  +F   V ++      G+  +K+ +EQ AA + LK+  
Sbjct: 181 MLIKYEGPPHRRKFYTKVCVANNVMGSGVGYTKKESEQNAAQDALKKLK 229


>gi|114570121|ref|YP_756801.1| ribonuclease III [Maricaulis maris MCS10]
 gi|114340583|gb|ABI65863.1| RNAse III [Maricaulis maris MCS10]
          Length = 228

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 106/221 (47%), Positives = 136/221 (61%), Gaps = 2/221 (0%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
            + LE+RIGY F ++ L+E+ALTH S +   +   +YERLEFLGDR+LGL+ +  LF  F
Sbjct: 5   IARLEQRIGYVFTDKRLIERALTHGSFAEGRKTIPTYERLEFLGDRVLGLMTAEALFKSF 64

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           D A EG L+ R NS+V  ETC+ VAR +DL + +R+     K      TSI  D  ESL+
Sbjct: 65  DKADEGALAPRLNSMVRKETCADVARAVDLGAALRIGKSEEKGGGRNKTSILGDACESLM 124

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AA+YLDGG      F D +W  R         DAK+ LQEWA       P Y++T RSGP
Sbjct: 125 AAIYLDGGRAAVQAFFDHHWGPRIEALKAKPLDAKSALQEWAAKTGRGVPRYELTERSGP 184

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH P FTV V ++ LAPA G   SK+ AE+ AA E+LKREG
Sbjct: 185 DHRPVFTVQVTVTPLAPAVGEGGSKQVAERAAAEELLKREG 225


>gi|57239534|ref|YP_180670.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
 gi|58579518|ref|YP_197730.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
 gi|81352757|sp|Q5HA74|RNC_EHRRW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|57161613|emb|CAH58541.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
 gi|58418144|emb|CAI27348.1| Ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
          Length = 227

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 84/220 (38%), Positives = 124/220 (56%), Gaps = 2/220 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + + K I Y F N  LL +ALTH S+    +   +YERLEFLGD +L L+IS +LFN F 
Sbjct: 4   NAISKIIKYDFKNTQLLNEALTHPSVLSKDNNNFNYERLEFLGDAVLNLVISEMLFNIFP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+ +  +LV      ++A+ ++L  FI +S   R    +  ++   + +E+LI 
Sbjct: 64  YDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIG 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG++ A  F+  +WK  A       +DAKT LQEWA +K    P Y +  +SGPD
Sbjct: 124 AIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPD 183

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H+P FTV V I+          +K+ AEQ AA+ +L +  
Sbjct: 184 HNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAKIN 223


>gi|15611674|ref|NP_223325.1| ribonuclease III [Helicobacter pylori J99]
 gi|7531198|sp|Q9ZLH2|RNC_HELPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|4155159|gb|AAD06188.1| RIBONUCLEASE III [Helicobacter pylori J99]
          Length = 239

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +   +        D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLK 236


>gi|315221419|ref|ZP_07863340.1| ribonuclease III [Streptococcus anginosus F0211]
 gi|315189538|gb|EFU23232.1| ribonuclease III [Streptococcus anginosus F0211]
          Length = 232

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 107/219 (48%), Gaps = 5/219 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L ++ G  F +  LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  + 
Sbjct: 8   LSQQFGIVFQDEKLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLISEYLYKKYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS   +++V  E+ +  +R+     FI++     K       +I  D+ E+ + 
Sbjct: 68  KKPEGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AL LD G+E    F+ +    +      +   D KT+LQE       V   Y+VT  SGP
Sbjct: 128 ALLLDKGVEAVKNFLYQVMIPKVEVGDFEQVIDYKTKLQELLQVNGDVEIVYQVTSESGP 187

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            H   F V V + G    QG   SK+ AEQ AA    ++
Sbjct: 188 AHAKEFAVAVSVDGRTVGQGQGRSKKLAEQEAAKNAFEK 226


>gi|317177479|dbj|BAJ55268.1| ribonuclease III [Helicobacter pylori F16]
          Length = 239

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ 
Sbjct: 15  NSSYITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 72

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L
Sbjct: 73  FYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEAL 132

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +A +YL+ G+            +   +        D KT LQE   A+F V P Y++   
Sbjct: 133 MAGVYLEAGLAKVRKITQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 192

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GPDH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 193 KGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 236


>gi|15645286|ref|NP_207456.1| ribonuclease III [Helicobacter pylori 26695]
 gi|2313785|gb|AAD07725.1| ribonuclease III (rnc) [Helicobacter pylori 26695]
          Length = 240

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ 
Sbjct: 16  NSSYTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHK 73

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L
Sbjct: 74  FYQYDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEAL 133

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +A +YL+ G+      +     +   +        D KT LQE   A+F V P Y++   
Sbjct: 134 MAGVYLEAGLAKVQKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKE 193

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GPDH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 194 KGPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLK 237


>gi|154505348|ref|ZP_02042086.1| hypothetical protein RUMGNA_02863 [Ruminococcus gnavus ATCC 29149]
 gi|153794391|gb|EDN76811.1| hypothetical protein RUMGNA_02863 [Ruminococcus gnavus ATCC 29149]
          Length = 252

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 75/216 (34%), Positives = 111/216 (51%), Gaps = 5/216 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           IGY F + SLLE+A+ HSS ++          ERLEFLGD +L L+ S  LF       E
Sbjct: 35  IGYEFQDFSLLEQAMMHSSYTNEKHLEKYHCNERLEFLGDAVLELVSSEFLFLESPKVSE 94

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+    S+V   + +  ARE++L S++ +             S+ +D +E+LI A+YL
Sbjct: 95  GKLTKTRASMVCEPSLAFCAREIELGSYLLLGKGEEATGGRQRPSVTSDAMEALIGAIYL 154

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG   A  F+ ++     L++ K   D+KT LQE   A       Y +    GPDH+  
Sbjct: 155 DGGFTNAKEFIHRFIL-TDLENKKLFYDSKTILQEIVQADMEEGISYHLIKEEGPDHNKS 213

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           FTV V+I       G   +K+AAEQ AA + + +  
Sbjct: 214 FTVEVKIGETVYGTGSGRTKKAAEQEAAYKAILKLK 249


>gi|121533802|ref|ZP_01665629.1| Ribonuclease III [Thermosinus carboxydivorans Nor1]
 gi|121307793|gb|EAX48708.1| Ribonuclease III [Thermosinus carboxydivorans Nor1]
          Length = 243

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 107/225 (47%), Gaps = 6/225 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62
              L   +G +F +  LL +AL H+S ++  +   E  ERLEFLGD +L L+IS  L+ +
Sbjct: 13  LRDLAASLGISFNDLGLLHQALVHTSYANEVKGGVEHNERLEFLGDAVLELIISEYLYRN 72

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGEL+     LV   + +Q A  L L  ++ +            TSI AD  E++
Sbjct: 73  FPELPEGELTKARARLVCEPSLAQCASRLGLGKYLLLGKGEAVSGGRERTSILADAFEAV 132

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           I A+YLDGG+  A  FV  +  +      +      D KT LQE           Y+V  
Sbjct: 133 IGAIYLDGGVSAATNFVLNHLHEDLALIWRGDYVFYDYKTVLQEVVQQAGECKISYEVVA 192

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GPDH+  F V V ++      G   +K+ AEQ AA E L++  
Sbjct: 193 EYGPDHNKTFEVSVLVNHQHLGAGSGKNKKEAEQNAAKEALQKLK 237


>gi|114564093|ref|YP_751607.1| ribonuclease III [Shewanella frigidimarina NCIMB 400]
 gi|122299035|sp|Q07YZ6|RNC_SHEFN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|114335386|gb|ABI72768.1| RNAse III [Shewanella frigidimarina NCIMB 400]
 gi|211926923|dbj|BAG82671.1| ribonuclease III [Shewanella sp. SIB1]
          Length = 226

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 85/228 (37%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     L + +GY F N  LL +ALTH S ++   +  ERLEFLGD IL + IS  L
Sbjct: 1   MEPIKNLPRLCRTLGYEFNNIELLIQALTHRSAAN---KHNERLEFLGDSILSIAISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +T + +A+E  L  ++ +     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVKGDTLTIIAKEFKLGDYLYLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  IEV    +  ++++R   +K G  ++D KT LQE+        P+Y+V
Sbjct: 118 EAIIGAVYLDADIEVCRKLLLSWYQERLAEIKPGINQKDPKTILQEYLQGFKKPLPDYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224
               G  HD  FTV  +IS L     G+  S+R AEQ+AAA+VL+   
Sbjct: 178 VAVEGEAHDQTFTVECKISELDKVVTGVASSRRKAEQLAAAQVLELLN 225


>gi|156975792|ref|YP_001446699.1| ribonuclease III [Vibrio harveyi ATCC BAA-1116]
 gi|269960405|ref|ZP_06174778.1| Ribonuclease 3 [Vibrio harveyi 1DA3]
 gi|189043375|sp|A7MZA8|RNC_VIBHB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|156527386|gb|ABU72472.1| hypothetical protein VIBHAR_03536 [Vibrio harveyi ATCC BAA-1116]
 gi|269834832|gb|EEZ88918.1| Ribonuclease 3 [Vibrio harveyi 1DA3]
          Length = 225

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LE+++GY F +  L+  ALTH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIDKLERKLGYQFKDAGLINLALTHRSA---NSKHNERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  IE     V  ++  R         ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDIEAVRGIVLSWYNSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FTV  +++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 177 NIKGEAHNQEFTVECDVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222


>gi|167758292|ref|ZP_02430419.1| hypothetical protein CLOSCI_00630 [Clostridium scindens ATCC 35704]
 gi|167664189|gb|EDS08319.1| hypothetical protein CLOSCI_00630 [Clostridium scindens ATCC 35704]
          Length = 235

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 115/226 (50%), Gaps = 5/226 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57
                  LEK+IGY F +  LL+KA+ HSS ++       E  ERLEFLGD +L L+ S 
Sbjct: 5   MNQELKELEKKIGYTFKDLQLLKKAMLHSSYANEKHLPKYECNERLEFLGDAVLELVSSE 64

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF   +   EGEL+    S+V     +  AREL L  ++ +             SI +D
Sbjct: 65  FLFYEHEKMPEGELTKTRASMVCEPALAFCARELSLGEYLLLGKGEEATGGRKRESITSD 124

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+Y+DGG   A  F+ ++   + L+  K   D+KT LQE   A F  T  Y++
Sbjct: 125 AMEALIGAIYIDGGFASAKEFIHRFIL-QDLEDKKLFFDSKTILQEIVQANFKETISYRL 183

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDHD  F V+V I       G   +K+AAEQ AA + + + 
Sbjct: 184 VREEGPDHDKSFHVMVYIGEEEYGLGKGRTKKAAEQEAAYQSILKL 229


>gi|146321055|ref|YP_001200766.1| dsRNA-specific ribonuclease [Streptococcus suis 98HAH33]
 gi|253751930|ref|YP_003025071.1| ribonuclease III [Streptococcus suis SC84]
 gi|253753753|ref|YP_003026894.1| ribonuclease III [Streptococcus suis P1/7]
 gi|253755369|ref|YP_003028509.1| ribonuclease III [Streptococcus suis BM407]
 gi|145691861|gb|ABP92366.1| dsRNA-specific ribonuclease [Streptococcus suis 98HAH33]
 gi|251816219|emb|CAZ51846.1| ribonuclease III [Streptococcus suis SC84]
 gi|251817833|emb|CAZ55586.1| ribonuclease III [Streptococcus suis BM407]
 gi|251819999|emb|CAR46159.1| ribonuclease III [Streptococcus suis P1/7]
 gi|292558506|gb|ADE31507.1| Ribonuclease III [Streptococcus suis GZ1]
          Length = 228

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 6/229 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L ++ L    G  F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MKDL-HAKLLADFGIDFSDLNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLMIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EGE+S   ++ V  E+ +  +R      F+R+     K       +I  
Sbjct: 60  KYLYQKYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD G +    F+ K    R    + +   D KT LQE       +   Y
Sbjct: 120 DAFEAFLGALLLDKGEKTVEEFIHKVMIPRLEKGNFERVTDYKTALQEILQVNGEIAISY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +V   SGP HD  F V V        +G   SK+ AEQ AA   ++  G
Sbjct: 180 QVIAESGPAHDKTFEVEVSADQRVIGRGRGRSKKLAEQAAAKNAVEARG 228


>gi|327461014|gb|EGF07347.1| ribonuclease III [Streptococcus sanguinis SK1057]
          Length = 232

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M   +   L ++    FA+ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENFK-KALLEQFDLVFADETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD G+E   +F+ +    +      +   D KT+LQE       V   Y
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPKVEAGDFERVTDYKTKLQELLQINGDVEITY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +V   +GP H   F V V I+G    QG   SK+ AEQ AA    ++
Sbjct: 180 QVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEK 226


>gi|84684005|ref|ZP_01011907.1| Ribonuclease III [Maritimibacter alkaliphilus HTCC2654]
 gi|84667758|gb|EAQ14226.1| Ribonuclease III [Rhodobacterales bacterium HTCC2654]
          Length = 226

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 87/225 (38%), Positives = 125/225 (55%), Gaps = 1/225 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +        RIG+ F    LL +ALTH SIS   +   +RLEFLGDR+LGL+++  +
Sbjct: 1   MKLSADLKGFANRIGHDFKRPELLIRALTHGSISSDTRPDNQRLEFLGDRVLGLVMAEAM 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                 A EG+L+ RFN+LV  E C+ VAR+++L + +++    +        ++  D +
Sbjct: 61  LAADKEASEGQLAPRFNALVRKEACADVARQVELGAVLKLGRSEQMSGGRRKQALLGDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+YLD G E A   + + W  R     +  RDAKT LQEWA A+    P Y    
Sbjct: 121 EAVIAAVYLDAGFEAAREMIVRLWGDRIGAVEEDARDAKTALQEWAQARKMQPPTYVEIA 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           R GPDH P FT+  ++     A+    SKRAAEQ AA  +L+R G
Sbjct: 181 RDGPDHAPEFTIEAQLENGEAARAKANSKRAAEQDAARALLERLG 225


>gi|210134869|ref|YP_002301308.1| ribonuclease III [Helicobacter pylori P12]
 gi|226741371|sp|B6JLQ0|RNC_HELP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|210132837|gb|ACJ07828.1| ribonuclease III [Helicobacter pylori P12]
          Length = 239

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +   +        D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLK 236


>gi|54297783|ref|YP_124152.1| ribonuclease III [Legionella pneumophila str. Paris]
 gi|148359410|ref|YP_001250617.1| ribonuclease III [Legionella pneumophila str. Corby]
 gi|296107456|ref|YP_003619157.1| ribonuclease III [Legionella pneumophila 2300/99 Alcoy]
 gi|81370372|sp|Q5X446|RNC_LEGPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043325|sp|A5ID21|RNC_LEGPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|53751568|emb|CAH12986.1| hypothetical protein lpp1834 [Legionella pneumophila str. Paris]
 gi|148281183|gb|ABQ55271.1| ribonuclease III [Legionella pneumophila str. Corby]
 gi|295649358|gb|ADG25205.1| ribonuclease III [Legionella pneumophila 2300/99 Alcoy]
          Length = 224

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             +    L +R+ Y F N + L++ALTH S      ++YER EFLGD IL  +I+  LFN
Sbjct: 1   MKINLERLCRRLNYHFNNIAYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFN 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+LS   + LV  E  +++ARE+ L  ++ +     +      TSI AD +E+
Sbjct: 58  RFPLHSEGQLSRLRSFLVKGEMLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++AA+YLDGG+  A   +   +  R          +DAKT+LQE+  A     PEY +T 
Sbjct: 118 ILAAIYLDGGMTAAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTK 177

Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
             G +H   F V   I G+   A G   ++R AEQ+AA  +L++ 
Sbjct: 178 IEGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLEQL 222


>gi|15601926|ref|NP_244998.1| ribonuclease III [Pasteurella multocida subsp. multocida str. Pm70]
 gi|13431826|sp|P57805|RNC_PASMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|12720269|gb|AAK02145.1| Rnc [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 225

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 112/225 (49%), Gaps = 6/225 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
                  L+++IGY F   +LL++ALTH S +    +  ERLEFLGD IL  +I+  L++
Sbjct: 1   MTQNLERLQRQIGYQFNQPALLKQALTHRSAA---VKHNERLEFLGDAILNFIIAEALYH 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EGELS    +LV   T + +AR+ +L  ++ +     K       SI AD VE+
Sbjct: 58  QFPKCNEGELSRMRATLVREPTLASLARQFELGDYLSLGPGELKSGGFRRESILADCVEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A+ LD  +      V  +++ +   ++ G  ++D KT LQE+   K    P Y V  
Sbjct: 118 IIGAISLDSDLATTTKIVQHWYQAQLKQIQPGDNQKDPKTRLQEYLQGKRLPLPTYNVVE 177

Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
             G  H   FTV   +  +     G   S+R AEQ AA ++L+  
Sbjct: 178 IKGEAHCQTFTVECYVKNIDRTFMGSGASRRKAEQAAAEKILQLL 222


>gi|290580116|ref|YP_003484508.1| putative ribonuclease III [Streptococcus mutans NN2025]
 gi|254997015|dbj|BAH87616.1| putative ribonuclease III [Streptococcus mutans NN2025]
          Length = 231

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 9/226 (3%)

Query: 7   STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
            TLEK++       F+++ LLE A TH+S ++ ++       ERLEFLGD +L L IS  
Sbjct: 2   KTLEKKLAEDFKIVFSDKELLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLTISRY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF+ +    EG+LS   + +V  E+ +  +R      +I++     K       +I  D+
Sbjct: 62  LFDKYPQKAEGDLSKMRSMIVREESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDL 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ + AL LD G++    F+++    +    + +   D KT LQE       V  +Y+V
Sbjct: 122 FEAFLGALLLDAGLKAVEAFLNQVVIPKVENNNYERVTDYKTALQELLQVDGDVLIDYEV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              SGP H   F V V ++    + G   SK+ AEQ AA   L++ 
Sbjct: 182 LKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEKL 227


>gi|322411350|gb|EFY02258.1| ribonuclease III [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 230

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 9/226 (3%)

Query: 7   STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             LE+ +       F +++LLE A TH+S ++ ++       ERLEFLGD +L L+IS  
Sbjct: 2   KKLEELLAASFDICFEDQTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  +    EG++S   + +V  E+ +  +R     ++I++     K       +I  D+
Sbjct: 62  LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDL 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ + AL LD G++    F+      +  K + +  +D KT LQE   +K  +  +Y+V
Sbjct: 122 FEAFLGALLLDKGVDEVRRFLKLVMIPQVEKGNFEKVKDYKTCLQELLQSKGDIAIDYQV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP H  +F V V ++    ++G+  SK+ AEQ AA   L + 
Sbjct: 182 ISEKGPAHAKQFEVAVFVNEEVLSKGLGKSKKMAEQDAAKNALVQL 227


>gi|116333590|ref|YP_795117.1| dsRNA-specific ribonuclease [Lactobacillus brevis ATCC 367]
 gi|116098937|gb|ABJ64086.1| dsRNA-specific ribonuclease [Lactobacillus brevis ATCC 367]
          Length = 229

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 5/223 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
             L+ R    F ++SLL++A T +S  + +     + YER+EFLGD ++ L++S  +F  
Sbjct: 7   QELKDRFDIHFKDQSLLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVMQLVVSNYIFRR 66

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           + +  +G L+    ++V+ ++ +  ARE     +IR+     K       S+  D+ ES 
Sbjct: 67  YPAMPQGRLTRLRAAMVNEQSFASFARECHFDQYIRLGRGEEKAQARQRDSLLCDIFESF 126

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           I ALY+D G++    FV      +          D KTELQE       V  +Y++    
Sbjct: 127 IGALYMDQGLDKVVEFVTTVVFPKLDEGRFDEFFDHKTELQELVQKNGPVDIDYRLLDEE 186

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GPD+D  F V V +      +G   SK+ AEQ AA   L+   
Sbjct: 187 GPDNDRAFKVAVYVDDKLLGEGHGHSKKHAEQNAARHALENLK 229


>gi|59712694|ref|YP_205470.1| ribonuclease III [Vibrio fischeri ES114]
 gi|197335272|ref|YP_002156886.1| ribonuclease III [Vibrio fischeri MJ11]
 gi|75431522|sp|Q5E314|RNC_VIBF1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|59480795|gb|AAW86582.1| RNase III [Vibrio fischeri ES114]
 gi|197316762|gb|ACH66209.1| ribonuclease III [Vibrio fischeri MJ11]
          Length = 223

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 111/227 (48%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LEK+IGY F + S L+ ALTH S         ERLEFLGD IL  +++  L+
Sbjct: 1   MNS-SLQRLEKKIGYQFKDESFLKLALTHRSA---NGTHNERLEFLGDSILSFVVADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE  L  ++ +     K       SI AD VE
Sbjct: 57  HRFPKVDEGDMSRMRATLVRGHTLAELGREFQLGDYLYLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD   E     +  ++  R         ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDTETVRGIILSWYNTRLESIEPGVSQKDPKTRLQEYLQGRRKPLPTYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224
              G  H+  FT+   ++GL  P  G   S+R AEQ AA   L +  
Sbjct: 177 KIKGEAHNQEFTIECIVAGLDKPVIGKGSSRRKAEQSAADIALGQLN 223


>gi|90407379|ref|ZP_01215564.1| ribonuclease III [Psychromonas sp. CNPT3]
 gi|90311530|gb|EAS39630.1| ribonuclease III [Psychromonas sp. CNPT3]
          Length = 231

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 113/225 (50%), Gaps = 5/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LE+RIGY F N +LL++ALTH S         ERLEFLGD IL  +IST L+
Sbjct: 5   MKETELKRLERRIGYKFNNFALLKQALTHRSA---LGAHNERLEFLGDSILSFVISTDLY 61

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+LS    +LV  +  +++ RE +L   + +     K       SI AD VE
Sbjct: 62  LRFPKVNEGDLSRMRATLVCGKMLAEIGREFELGDSLILGPGELKSGGFRRDSIIADGVE 121

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178
           S+I A++LD  I      V  ++  R         ++D KT LQE   ++    P Y+V 
Sbjct: 122 SIIGAVFLDSDINSVDRLVLAWFNSRLTTIEPGIGQKDPKTRLQEHLQSRKQGLPLYEVL 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+ RFT+   I G+   QG   S+R AEQ+AA ++L   
Sbjct: 182 EIRGEAHNQRFTMSCIIDGIEAVQGQGTSRRKAEQIAAEKMLVAL 226


>gi|147669550|ref|YP_001214368.1| ribonuclease III [Dehalococcoides sp. BAV1]
 gi|289432809|ref|YP_003462682.1| ribonuclease III [Dehalococcoides sp. GT]
 gi|146270498|gb|ABQ17490.1| RNAse III [Dehalococcoides sp. BAV1]
 gi|288946529|gb|ADC74226.1| ribonuclease III [Dehalococcoides sp. GT]
          Length = 248

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLL 59
           L  + LE  +G  F   SLLE+AL H+S  +          ER+EFLGD +LG++ +  L
Sbjct: 13  LDLTELENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRL 72

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F   +EG+L+   + LV  E+  +VA  ++L  ++ +          F  +  A   
Sbjct: 73  YHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDVSKGRFKPANLAGAF 132

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177
           E+++AA+Y+D G++V    + + +K    +        D K+ LQE   A+  +TP Y++
Sbjct: 133 EAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQELIQAQLQLTPRYRI 192

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           T  SGP+H+  F   V       A+G   SK+ AE  AA   L++
Sbjct: 193 TNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAAKVALQQ 237


>gi|160880576|ref|YP_001559544.1| ribonuclease III [Clostridium phytofermentans ISDg]
 gi|160429242|gb|ABX42805.1| Ribonuclease III [Clostridium phytofermentans ISDg]
          Length = 235

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
            +  E++I YAF    LL +ALTHSS ++  +     + ERLEFLGD +L L  S  LF 
Sbjct: 10  LAEFEQKIDYAFTEPGLLRQALTHSSFANEKRLSKLANNERLEFLGDAVLELTTSEWLFE 69

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EG+L+    S+V  +T +  AREL L +++ +             SI +D +ES
Sbjct: 70  KHPKMPEGDLTKLRASMVCEQTLALCARELHLGNYVFLGKGEDTTGGRDRDSILSDALES 129

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +I A+YLDGG   A  F+  Y         K   D+KT LQE   +++     Y++   +
Sbjct: 130 IIGAIYLDGGFANAKEFISNYILSDIEHK-KLFYDSKTILQEIVQSEYKKHLSYELLQET 188

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GPDH+ +FTVV ++   +   G   +K+AAEQ AA   + + 
Sbjct: 189 GPDHNKKFTVVAKMDEESLEIGTGRTKKAAEQEAAYRSILQL 230


>gi|73748788|ref|YP_308027.1| ribonuclease III [Dehalococcoides sp. CBDB1]
 gi|90101624|sp|Q3ZXY9|RNC_DEHSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|73660504|emb|CAI83111.1| ribonuclease III [Dehalococcoides sp. CBDB1]
          Length = 237

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLL 59
           L  + LE  +G  F   SLLE+AL H+S  +          ER+EFLGD +LG++ +  L
Sbjct: 2   LDLTELENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRL 61

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F   +EG+L+   + LV  E+  +VA  ++L  ++ +          F  +  A   
Sbjct: 62  YHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDVSKGRFKPANLAGAF 121

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177
           E+++AA+Y+D G++V    + + +K    +        D K+ LQE   A+  +TP Y++
Sbjct: 122 EAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQELIQAQLQLTPRYRI 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           T  SGP+H+  F   V       A+G   SK+ AE  AA   L++
Sbjct: 182 TNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAAKVALQQ 226


>gi|317050765|ref|YP_004111881.1| ribonuclease III [Desulfurispirillum indicum S5]
 gi|316945849|gb|ADU65325.1| ribonuclease III [Desulfurispirillum indicum S5]
          Length = 247

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61
           R + LE+R+GY F  + LL  ALTH S  HS +   E+ ERLEFLGD +LGL+IS  L  
Sbjct: 10  RIAPLEERLGYVFMRKELLHTALTHRSFFHSNRKSAENNERLEFLGDSVLGLIISHYLLE 69

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            F +  EG+LS   + +V+ +T S+VARE + L  ++ +             SI AD +E
Sbjct: 70  SFPAQSEGKLSKIRSFIVNEKTLSRVAREKIQLGRYLFIGKGEENTGGRNKASILADAME 129

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++AA+YLDGG+  A   + +   +           RD KTELQE +     + PEY+V 
Sbjct: 130 AVVAAIYLDGGLNAARNIILELMSEEIESTVFSNRHRDYKTELQELSQGSLSLAPEYRVE 189

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GPDH   F V + +       G   SK++AEQ AA   +++ 
Sbjct: 190 REWGPDHQKHFAVSLYLHDQVYGHGEGTSKKSAEQKAARAAMEKL 234


>gi|91227852|ref|ZP_01262025.1| ribonuclease III [Vibrio alginolyticus 12G01]
 gi|269965785|ref|ZP_06179882.1| Ribonuclease 3 [Vibrio alginolyticus 40B]
 gi|91188362|gb|EAS74658.1| ribonuclease III [Vibrio alginolyticus 12G01]
 gi|269829653|gb|EEZ83890.1| Ribonuclease 3 [Vibrio alginolyticus 40B]
          Length = 225

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 118/226 (52%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LE+++GY F +  L+  ALTH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIDKLERKLGYQFQDAGLINLALTHRSA---NSKHNERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  +EV    V  +++ R         ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDLEVVRGIVLSWYQSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222


>gi|251781986|ref|YP_002996288.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390615|dbj|BAH81074.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 230

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 9/226 (3%)

Query: 7   STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             LE+ +       F + +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  
Sbjct: 2   KKLEELLAASFDICFEDHTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  +    EG++S   + +V  E+ +  +R     ++I++     K       +I  D+
Sbjct: 62  LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDL 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ + AL LD G++    F+ +    +  K + +  +D KT LQE   +K  +  +Y+V
Sbjct: 122 FEAFLGALLLDKGVDEVRRFLQQVMIPQVEKGNFEKVKDYKTCLQELLQSKGDIAIDYQV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP H  +F V V ++    ++G+  SK+ AEQ AA   L + 
Sbjct: 182 ISEKGPAHAKQFEVAVFVNEEVLSKGLGKSKKMAEQDAAKNALVQL 227


>gi|110633304|ref|YP_673512.1| ribonuclease III [Mesorhizobium sp. BNC1]
 gi|110284288|gb|ABG62347.1| RNAse III [Chelativorans sp. BNC1]
          Length = 238

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 106/221 (47%), Positives = 143/221 (64%), Gaps = 1/221 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             + +RIG +F +  LLE+ALTHSS +      Y+RLEFLGDR+LGL ++ +L+  +  A
Sbjct: 13  EAVNERIGLSFRDAELLERALTHSS-ARGKGGDYQRLEFLGDRVLGLAVAEMLYEAYPDA 71

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS+R NSLV+AET +++  EL L + IR  SDL+        +++ADV+E+LIA +
Sbjct: 72  SEGELSLRLNSLVNAETLAEITEELGLDTLIRTGSDLKALAMRKQVNLRADVLEALIAVI 131

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YL  G++ A  F+  +W +R+   G  R DAKT LQEWAH     TP+Y +  R GPDHD
Sbjct: 132 YLQDGLDGARQFIRTHWTERSTAEGAARADAKTALQEWAHRVSSATPDYVIESREGPDHD 191

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           P FT VV I+G    +G   SKR AEQ AA EVL RE +WT
Sbjct: 192 PVFTAVVRIAGFQEGRGRGRSKREAEQAAATEVLIREAVWT 232


>gi|308184450|ref|YP_003928583.1| ribonuclease III [Helicobacter pylori SJM180]
 gi|308060370|gb|ADO02266.1| ribonuclease III [Helicobacter pylori SJM180]
          Length = 239

 Score =  145 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++ VSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAISLQDYLHVSSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      + K   +   +        D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 196 DHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 236


>gi|240949696|ref|ZP_04754031.1| ribonuclease III [Actinobacillus minor NM305]
 gi|240295954|gb|EER46630.1| ribonuclease III [Actinobacillus minor NM305]
          Length = 223

 Score =  145 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 6/223 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY F     L +ALTH S +    ++ ERLEFLGD IL   I   L++ F
Sbjct: 1   MQLERLQKKLGYQFETLDYLTQALTHRSAA---SKNNERLEFLGDSILNFTIGKALYDKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+ +L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKADEGELSRMRAALVREQTLAVIARQFELGEYLKLGAGELKSGGFRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G+E A   +  +++     +  G+ ++D KT LQE+   +    PEY+V    
Sbjct: 118 AAIYLDKGMEPAMERIYAWYETFLAEITPGEAQKDPKTRLQEFLQGRKLPLPEYEVIDIK 177

Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G  H+  F V  ++ G      G   S+R AEQ  A +VL + 
Sbjct: 178 GEAHNQTFKVTCKVQGIEEIFTGQGTSRRKAEQNVAEKVLTQI 220


>gi|254474637|ref|ZP_05088023.1| ribonuclease III [Ruegeria sp. R11]
 gi|214028880|gb|EEB69715.1| ribonuclease III [Ruegeria sp. R11]
          Length = 222

 Score =  145 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 87/216 (40%), Positives = 126/216 (58%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             E RIGY F   +LL +ALTH+S+S   ++  +RLEFLGDR+LGL+++T L      A 
Sbjct: 3   AFEARIGYQFTEPALLVRALTHASVSSPNRKDNQRLEFLGDRVLGLVMATALLETDKDAS 62

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+L+ RFN+LV  ETC+ VAR++D+ S +++             ++  D +E++IAA+Y
Sbjct: 63  EGQLAPRFNALVRKETCADVARQIDVGSVLKLGRSETLSGGRRKMALLGDAMEAVIAAVY 122

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            DGG + A   + + W  R  +     RDAKT LQE+A A+    P Y +  R GPDH P
Sbjct: 123 KDGGFDAAQELILRLWGDRIGRVEADARDAKTTLQEFAQARGEQPPTYVLVERKGPDHQP 182

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            FT+ V++      +    SKR AEQ AA  +L R 
Sbjct: 183 EFTISVQLQDGTEGRATAGSKRQAEQAAAKSLLARL 218


>gi|170744647|ref|YP_001773302.1| ribonuclease III [Methylobacterium sp. 4-46]
 gi|168198921|gb|ACA20868.1| Ribonuclease III [Methylobacterium sp. 4-46]
          Length = 244

 Score =  145 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 91/222 (40%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             S LE RIG+AF ++ LL +ALTH S     +ESY+RLEFLGDR+LGL ++  L     
Sbjct: 15  DLSALEGRIGHAFDDKDLLARALTHVSAGAG-EESYQRLEFLGDRVLGLAVAEGLLRALP 73

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG+LS R + LV  E+C+ VA+  ++   +R+ +           +I ADV E+++ 
Sbjct: 74  GADEGDLSRRLSGLVRRESCAAVAQAWEVGPHLRLGAGEVHGGGRRNPAILADVCEAILG 133

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A++LD G   A   +D+ +       G   RD K+ LQEWA      TP Y V  R+GPD
Sbjct: 134 AIFLDAGYAAAKAVIDRAFAAAEEAEGPRGRDPKSALQEWAQGLGLPTPTYAVVERAGPD 193

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           H P F +   ++G+AP+ G+  SKR AEQ AA  +L+REG+W
Sbjct: 194 HAPIFRIEARVAGVAPSLGVGGSKRLAEQEAARLLLRREGVW 235


>gi|119471905|ref|ZP_01614213.1| RNase III, ds RNA [Alteromonadales bacterium TW-7]
 gi|119445278|gb|EAW26568.1| RNase III, ds RNA [Alteromonadales bacterium TW-7]
          Length = 225

 Score =  145 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 112/223 (50%), Gaps = 6/223 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M     + L  +IGY F+++ LLE+A+TH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MKK-NVTELYNKIGYEFSDQGLLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANALY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A+EG+LS   ++LV  +T ++   E  L  ++R+     K       S  AD VE
Sbjct: 57  AKFPKAREGDLSRMRSTLVRGQTLAEFGVEFGLGDYLRLGPGELKSGGFRRESTLADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A +LD GIE     +  +++ R         ++D KT LQE    +    P Y V 
Sbjct: 117 AIIGAAFLDSGIERCSELILSWYESRLDAISPGLNQKDPKTLLQEHLQGRKLPLPGYTVV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              G  H+  FTV   + G+     +  S+R AEQ AA + LK
Sbjct: 177 DTKGQAHNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALK 219


>gi|254230524|ref|ZP_04923895.1| ribonuclease III [Vibrio sp. Ex25]
 gi|262393270|ref|YP_003285124.1| ribonuclease III [Vibrio sp. Ex25]
 gi|151936949|gb|EDN55836.1| ribonuclease III [Vibrio sp. Ex25]
 gi|262336864|gb|ACY50659.1| ribonuclease III [Vibrio sp. Ex25]
          Length = 225

 Score =  145 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LE+++GY F +  L+  ALTH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIDKLERKLGYQFQDAGLINLALTHRSA---NSKHNERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  +EV    V  ++  R         ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDLEVVRGIVLSWYNSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222


>gi|39997326|ref|NP_953277.1| ribonuclease III [Geobacter sulfurreducens PCA]
 gi|81701827|sp|Q74AX1|RNC_GEOSL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|39984217|gb|AAR35604.1| ribonuclease III [Geobacter sulfurreducens PCA]
 gi|298506263|gb|ADI84986.1| ribonuclease III [Geobacter sulfurreducens KN400]
          Length = 248

 Score =  145 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 6/221 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LE  IGY F +R  L++ALTH S  +  +       ERLEF GD ILG  I  +L  H+ 
Sbjct: 19  LETSIGYRFTDRRFLDEALTHRSWLNEVRSPTVPDNERLEFFGDAILGFCIGKMLLRHYP 78

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            ++EG L+   ++LV  ET + +A  ++L S++R+     +       S+ A+ +E+L+A
Sbjct: 79  ESREGALARMKSALVGEETLADLAAAVELGSYLRLGRGEERSGGRHRRSLLANALEALLA 138

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLDGG+      VD ++  R   + +G   RD KT+ QE A A++G  P Y +   SG
Sbjct: 139 AMYLDGGMAPVERLVDAWFGPRLAGVAAGIKGRDFKTDFQELAQAQYGGLPRYVLVDTSG 198

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P HD RFTV   +      QG   SK+ AEQ AA + L+R 
Sbjct: 199 PAHDLRFTVAAYVGERLLGQGTGRSKKEAEQAAARQCLERL 239


>gi|24379904|ref|NP_721859.1| ribonuclease III [Streptococcus mutans UA159]
 gi|81451148|sp|Q8DT66|RNC_STRMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|24377882|gb|AAN59165.1|AE014983_6 putative ribonuclease III [Streptococcus mutans UA159]
          Length = 231

 Score =  145 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 9/226 (3%)

Query: 7   STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
            TLEK++       F+++ LLE A TH+S ++ ++       ERLEFLGD +L L IS  
Sbjct: 2   KTLEKKLAEDFKIVFSDKELLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLTISHY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF+ +    EG+LS   + +V  E+ +  +R      +I++     K       +I  D+
Sbjct: 62  LFDKYPQKAEGDLSKMRSMIVREESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDL 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ + AL LD G++    F+++    +    + +   D KT LQE       V  +Y+V
Sbjct: 122 FEAFLGALLLDAGLKAVEAFLNQVVIPKVENNNYERVTDYKTALQELLQVDGDVLIDYEV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              SGP H   F V V ++    + G   SK+ AEQ AA   L++ 
Sbjct: 182 LKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEKL 227


>gi|332532635|ref|ZP_08408511.1| ribonuclease III [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037851|gb|EGI74300.1| ribonuclease III [Pseudoalteromonas haloplanktis ANT/505]
          Length = 225

 Score =  145 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M     + L K+IGY FA++ LLE+A+TH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MKK-NVTELYKKIGYEFADQGLLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANALY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A+EG+LS   ++LV  +T ++   E  L  ++R+     K       S  AD VE
Sbjct: 57  AKFPKAREGDLSRMRSTLVRGQTLAEFGLEFGLGDYLRLGPGELKSGGFRRESTLADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A +LD GI+  G  +  +++ R         ++D KT LQE+  A+    P Y V 
Sbjct: 117 AIIGAAFLDSGIDSCGDLILSWYESRLDAISPGLNQKDPKTLLQEYLQARKLSLPGYTVV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              G  H+  FTV   + G+     +  S+R AEQ AA + LK   
Sbjct: 177 DTKGQAHNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALKILK 222


>gi|317012480|gb|ADU83088.1| ribonuclease III [Helicobacter pylori Lithuania75]
          Length = 239

 Score =  145 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++R+SS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRISSSEEISNGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +   +        D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLK 236


>gi|316934144|ref|YP_004109126.1| ribonuclease III [Rhodopseudomonas palustris DX-1]
 gi|315601858|gb|ADU44393.1| ribonuclease III [Rhodopseudomonas palustris DX-1]
          Length = 272

 Score =  145 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 105/219 (47%), Positives = 141/219 (64%), Gaps = 2/219 (0%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +E+RIG++FA+ SLL  ALTH S   S    +SY+RLEFLGD +LGL++S +L+  F  A
Sbjct: 47  IEQRIGHSFADPSLLTTALTHVSALKSARRTDSYQRLEFLGDHVLGLIVSDMLYRAFPDA 106

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS R   LV  E+C+ VAR LDL+  I++ +           S+  D+ E++I A+
Sbjct: 107 DEGELSKRLADLVRKESCADVARHLDLSEGIKIGTVGAGAGAKLRKSVLGDICEAVIGAV 166

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG E A  FV   W +R  K  +  RD KT LQEWA A+   TP Y+   R+GP HD
Sbjct: 167 YLDGGYEAASNFVRSNWTERMHKPVRSLRDPKTVLQEWAQARGLPTPVYREVERTGPHHD 226

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           P+F V V + GL PA+G+  SKRAAE+VAA+ +L REG+
Sbjct: 227 PQFRVAVVLPGLEPAEGVGGSKRAAEKVAASAMLAREGV 265


>gi|207092393|ref|ZP_03240180.1| ribonuclease III [Helicobacter pylori HPKX_438_AG0C1]
          Length = 239

 Score =  145 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA+  +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +   +        D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQAQFCVIPTYQLLKEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH   F + + I     A     SK+ AEQ  A   L++  
Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQKLK 236


>gi|317014083|gb|ADU81519.1| ribonuclease III [Helicobacter pylori Gambia94/24]
          Length = 239

 Score =  145 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++R+SS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRISSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      + K   +   +        D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLK 236


>gi|88858204|ref|ZP_01132846.1| RNase III, dsRNA [Pseudoalteromonas tunicata D2]
 gi|88819821|gb|EAR29634.1| RNase III, dsRNA [Pseudoalteromonas tunicata D2]
          Length = 225

 Score =  145 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 6/223 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+    + L  +IGY F N +LLE+A+TH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNK-NVTDLYTKIGYTFNNVALLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANELY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  ++EG+LS   ++LV  +T ++   E +L  ++R+     K       S  AD VE
Sbjct: 57  KRFPKSREGDLSRMRSTLVRGQTLAEFGLEFNLGDYLRLGPGELKSGGYRRESTLADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++LD GI+     +     ++   +  G  ++D KT LQE+  A+    P Y V 
Sbjct: 117 AIIGAVFLDSGIDTCSNLILSWYKFRLDEISPGLNQKDPKTLLQEYLQARKLPLPNYTVI 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              G  H+  FTV   + G+     +  S+R AEQ AA + LK
Sbjct: 177 DTKGQAHNQSFTVECVVEGMNSIVSVGSSRRKAEQKAAEKALK 219


>gi|257464706|ref|ZP_05629077.1| ribonuclease III [Actinobacillus minor 202]
 gi|257450366|gb|EEV24409.1| ribonuclease III [Actinobacillus minor 202]
          Length = 223

 Score =  145 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY F     L +ALTH S +    ++ ERLEFLGD IL   I   L++ F
Sbjct: 1   MQLERLQKKLGYQFETLDYLTQALTHRSAA---SKNNERLEFLGDSILNFTIGKALYDKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+ +L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKADEGELSRMRAALVREQTLAVIARQFELGEYLKLGAGELKSGGFRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G+E A   +  +++     +  G+ ++D KT LQE+   +    PEY+V    
Sbjct: 118 AAIYLDKGMEPAMERIYAWYETFLAEITPGEAQKDPKTRLQEFLQGRKLPLPEYEVIDIK 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           G  H+  F V  ++ G+     G   S+R AEQ  A +VL + 
Sbjct: 178 GEAHNQTFKVTCKVQGIDEIFTGQGTSRRKAEQNVAEKVLTQI 220


>gi|315127397|ref|YP_004069400.1| RNase III, ds RNA [Pseudoalteromonas sp. SM9913]
 gi|315015911|gb|ADT69249.1| RNase III, ds RNA [Pseudoalteromonas sp. SM9913]
          Length = 225

 Score =  145 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M     + L KRIGY FA++ LLE+A+TH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MKK-NVTELYKRIGYTFADQGLLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANALY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A+EG+LS   ++LV  +T ++   E +L  ++R+     K       S  AD VE
Sbjct: 57  AKFPKAREGDLSRMRSTLVRGQTLAEFGLEFELGDYLRLGPGELKSGGFRRESTLADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++LD  I+  G  +  +++ R         ++D KT LQE+  A+    P Y V 
Sbjct: 117 AIIGAVFLDSDIDRCGELILAWYESRLDAISPGLNQKDPKTLLQEYLQARKLSLPGYTVV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              G  H+  FTV   + G+     +  S+R AEQ AA + LK   
Sbjct: 177 DTKGQAHNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALKILK 222


>gi|116748321|ref|YP_845008.1| ribonuclease III [Syntrophobacter fumaroxidans MPOB]
 gi|189043370|sp|A0LGM1|RNC_SYNFM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116697385|gb|ABK16573.1| RNAse III [Syntrophobacter fumaroxidans MPOB]
          Length = 242

 Score =  144 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 11/232 (4%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLI 55
           M        L+  +GY F +  LL +AL H S  H      ++  E LEFLGD +LGL I
Sbjct: 1   MKPSDGLEALQNLLGYRFGDEGLLHRALVHRSYLHENPHLDEKDNETLEFLGDAVLGLAI 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L   F    EGELS   +++V+    +++A EL+L  ++ +             S+ 
Sbjct: 61  SHFLLEQFPDYNEGELSRLRSAIVNERELTRIAVELNLGEYLLLGKGEEMTGGRRKASLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKF 169
           AD +E+L+A++YLDGG++     + K +        +        +D KT+LQE   A++
Sbjct: 121 ADSLEALLASIYLDGGLDAVLGVIKKLFDVYLRFEKREHVLKALDKDYKTQLQELTQARY 180

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +TP Y +    GPDHD  F + V + G   A G   SK+ A+Q AA + L+
Sbjct: 181 KLTPVYVLDREEGPDHDKTFHMNVVLEGQVLAGGSGKSKKDAQQAAAEKALQ 232


>gi|116515099|ref|YP_802728.1| hypothetical protein BCc_163 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285505|sp|Q057R4|RNC_BUCCC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116256953|gb|ABJ90635.1| ribonuclease III [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 226

 Score =  144 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +    L+K IGY F N +LL+ ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVMKKLQKFIGYTFTNITLLKHALTHRSASS---QHNERLEFLGDSILSFIIAKALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +HF    EG +S    +LV   T +++A E  L  ++++    +K       SI A+ +E
Sbjct: 58  HHFPKMNEGGMSRMRATLVRGNTLAEIATEFSLGKYLQLGQGEKKSGGFKRESILANAIE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IA+++LD  I      +  ++K R  K      ++D KT LQE+  +K    P Y + 
Sbjct: 118 AIIASIFLDSNIYTVERIILYWYKNRFKKMNPTGTKKDPKTRLQEYLQSKHFSLPIYSIG 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  FT+  +I GL     G+  S+R AEQ AA   L R  +
Sbjct: 178 QIYGEAHNQIFTIYCKIDGLSELLIGIGASRRKAEQDAAQNALIRLEV 225


>gi|290968970|ref|ZP_06560505.1| ribonuclease III [Megasphaera genomosp. type_1 str. 28L]
 gi|290780926|gb|EFD93519.1| ribonuclease III [Megasphaera genomosp. type_1 str. 28L]
          Length = 236

 Score =  144 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 111/233 (47%), Gaps = 10/233 (4%)

Query: 1   MSALRYSTLEKRIGY----AFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILG 52
           M   R   LE+ +       F N  LL++ALTHSS ++ ++       ERLEFLGD IL 
Sbjct: 1   MDNTRKKQLEEFLRTVGLPPFQNLLLLDQALTHSSYANEHKIRHGYFNERLEFLGDAILD 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L++   LF  +   +EGELS    S+VS    + V     +  ++ +             
Sbjct: 61  LVVGEYLFLQYPQMQEGELSKARASIVSEAPLAAVCSAFHMGKYLLLGHGEISSGGRERP 120

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFG 170
            I AD  E+++ A+Y+D   E A  F+ ++ +     +++G + +D KT  QE+      
Sbjct: 121 GILADAFEAVVGAVYMDASYEEARKFILRHLRDYLALVENGHYDQDYKTLFQEYIQRDGE 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               Y +   SGPDHD  FT+ V   G    +G   SK+ AEQ AA + L R 
Sbjct: 181 HHITYSLCKESGPDHDKTFTMQVAADGKVLGEGCGKSKKMAEQHAARQALLRL 233


>gi|260892849|ref|YP_003238946.1| ribonuclease III [Ammonifex degensii KC4]
 gi|260864990|gb|ACX52096.1| ribonuclease III [Ammonifex degensii KC4]
          Length = 235

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 110/224 (49%), Gaps = 4/224 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +  + L+ ++G ++    LL  ALTH S ++ +   E  +RLEFLGD +L L++S  L+ 
Sbjct: 1   MGLAKLKDKLGISWKEEKLLRLALTHPSYAYEHPGVEHNQRLEFLGDSVLSLVVSDYLYR 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EGEL+    ++V   + ++VA EL +   + +     K       S+ AD  E+
Sbjct: 61  TFPEKSEGELTRLRAAVVCEASLARVAEELGIGEALLLGRGEEKSGGRKRPSLLADAFEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A+YLD G+EVA  F     +        G+  RD KTELQE           Y+V  
Sbjct: 121 LLGAIYLDQGLEVASAFALHLLRPVLQDVLEGRVERDYKTELQELLQKGSPEKIVYEVLQ 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GPDH  RF V V   G    +G   SK+ AEQ AA E   + 
Sbjct: 181 EEGPDHAKRFLVGVYYQGKCLGRGEGRSKKEAEQRAAREAWLKL 224


>gi|254779351|ref|YP_003057456.1| ribonuclease III [Helicobacter pylori B38]
 gi|254001262|emb|CAX29239.1| Ribonuclease III (RNase III) [Helicobacter pylori B38]
          Length = 232

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 81/231 (35%), Positives = 119/231 (51%), Gaps = 9/231 (3%)

Query: 1   MSALR-----YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55
           M   R     Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I
Sbjct: 1   MKNKRSQNSPYTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVI 58

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
             LL++ F    EG+LS    S+VSA   +++A+ + L  ++RVSS           SI 
Sbjct: 59  GELLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSIL 118

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTP 173
           +   E+L+A +YL+ G+      +     +   +        D KT LQE   A+F V P
Sbjct: 119 SSAFEALMAGVYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIP 178

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            Y++    GPDH   F + + I     A     SK+ AEQ  A +VL++  
Sbjct: 179 TYQLLQEKGPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQVLQKLK 229


>gi|116511619|ref|YP_808835.1| ribonuclease III [Lactococcus lactis subsp. cremoris SK11]
 gi|122940253|sp|Q030F9|RNC_LACLS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116107273|gb|ABJ72413.1| RNAse III [Lactococcus lactis subsp. cremoris SK11]
          Length = 231

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 102/226 (45%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+   L+   G  F +  LL+ A THSS ++  +     + ERLEFLGD  L L+IS
Sbjct: 1   MLKLQ-EKLKNDYGLVFNDEDLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EGELS   +S+V  E+ +  +R      F+R+     K       +   
Sbjct: 60  DYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLE 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           ++ E+ + AL++D G++    F+                 D KTELQE        T  Y
Sbjct: 120 NLFEAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVIDYKTELQEVLQVGGETTITY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +    GP HD  F   V  +G    +G+  SK+ AEQ AA   +K
Sbjct: 180 NILKEEGPAHDRSFVAAVYNNGKELGRGLGKSKKVAEQKAAENAIK 225


>gi|91794117|ref|YP_563768.1| ribonuclease III [Shewanella denitrificans OS217]
 gi|123165871|sp|Q12KI1|RNC_SHEDO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|91716119|gb|ABE56045.1| RNAse III [Shewanella denitrificans OS217]
          Length = 226

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 81/228 (35%), Positives = 120/228 (52%), Gaps = 7/228 (3%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +   + L + +GY F N+ LL +ALTH S ++   +  ERLEFLGD IL ++IS  L
Sbjct: 1   MEPVKNLARLSRTLGYEFTNQELLVQALTHRSAAN---KHNERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  ET + +A+E  L  ++ +     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVKGETLTLIAKEFKLGDYLFLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  ++   T        +   +K G  ++D KT LQE+        P+Y+V
Sbjct: 118 EAIIGAVYLDANMQACETLLLSWYKVRLDEIKPGINQKDPKTILQEYLQGYKKPLPDYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224
               G  HD  FTV   I  L     G+  S+R AEQ+AAA++L+   
Sbjct: 178 VQVDGEAHDQTFTVECRIQDLDEVVTGVGSSRRKAEQLAAAQILELIN 225


>gi|15892080|ref|NP_359794.1| ribonuclease III [Rickettsia conorii str. Malish 7]
 gi|22654066|sp|Q92JB0|RNC_RICCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|15619202|gb|AAL02695.1| ribonuclease III [Rickettsia conorii str. Malish 7]
          Length = 227

 Score =  144 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 115/228 (50%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M +  +  LEK + Y+F N+ LL +AL+H S+   ++    + YERLEFLGD +L L+I+
Sbjct: 1   MES--FEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVIT 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +LF +F +  EG L+   + LV  ET   V  +L L ++I ++            +   
Sbjct: 59  EILFRNFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYIIMTHGEEVAGGRDNLNNIE 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +  E+LIAA+YLD  IE     ++  W +          D KT LQEWA A     P Y+
Sbjct: 119 NATEALIAAIYLDSNIETTHDIIENLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYR 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  R G  H   FTV+V++       G   + + AE+ AA  +L R  
Sbjct: 179 LIKREGASHSSTFTVLVKVKDYEQ-TGTGHTIKEAEKNAARSLLHRLK 225


>gi|328955642|ref|YP_004372975.1| RNAse III [Coriobacterium glomerans PW2]
 gi|328455966|gb|AEB07160.1| RNAse III [Coriobacterium glomerans PW2]
          Length = 241

 Score =  144 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 115/225 (51%), Gaps = 3/225 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
           + +    E+   + FA+R LL  ALTH S         SYERLEFLGD ILG +++  LF
Sbjct: 4   SEKLRAAEQICHHRFADRQLLRCALTHPSAVEGQPVCASYERLEFLGDSILGAIVAVALF 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N + S  EG L+    SLVS    S V  EL +   I   +         M S   +V E
Sbjct: 64  NSYPSIDEGRLTRLKVSLVSGAMLSDVGLELGIDRCIIFGASETGTGARGMHSALENVYE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           SL+AA+YLDGG +VA  F+ +  +   A    +   + K+ LQE      G  P YK+  
Sbjct: 124 SLVAAMYLDGGWDVAEAFILRTLEPHLADDRPESVSNPKSILQERVQEDHGEPPCYKLVG 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            SGP H+P FT VV + G+   +G   SK+ AE  AA + L+R G
Sbjct: 184 MSGPAHEPTFTAVVLVDGVRCGRGTGSSKKEAEASAARDALERMG 228


>gi|32266198|ref|NP_860230.1| ribonuclease III [Helicobacter hepaticus ATCC 51449]
 gi|81666107|sp|Q7VIA9|RNC_HELHP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|32262248|gb|AAP77296.1| ribonuclease III [Helicobacter hepaticus ATCC 51449]
          Length = 240

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/217 (34%), Positives = 112/217 (51%), Gaps = 4/217 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK++GY F N+ LL +ALTH S    Y  + ERLEFLGD +L LL+   LF  F  AKE
Sbjct: 13  LEKKLGYVFQNQQLLLEALTHKSCKKQY--NNERLEFLGDAVLDLLVGEYLFKKFPLAKE 70

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS     +V+ +   ++A+ LDL +++ +S     +      SI ++  E+LI A+YL
Sbjct: 71  GELSKLRACIVNEKGFMKLAQSLDLGAYLYISQSEENNNGRQKASILSNAFEALIGAIYL 130

Query: 129 DGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +  +    + +     +    +       D KT LQE   A +G  P Y +   SGPDH 
Sbjct: 131 ESSLTYVQSIIYDLLEYNYIKIDLDSLFMDYKTALQEITQAFYGEIPTYTLISESGPDHK 190

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F + + + G   A+    SK+ A+Q +A    K+ 
Sbjct: 191 KSFEIALSVQGKEYARASGNSKKEAQQKSAQIAYKKL 227


>gi|89070097|ref|ZP_01157427.1| Ribonuclease III [Oceanicola granulosus HTCC2516]
 gi|89044318|gb|EAR50461.1| Ribonuclease III [Oceanicola granulosus HTCC2516]
          Length = 226

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 88/224 (39%), Positives = 128/224 (57%), Gaps = 1/224 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +   +    R+G+ F N  LL +ALTH S S + +   +RLEFLGDR+LGL+++  L
Sbjct: 1   MKLSADLTAFCDRLGHRFENPELLLRALTHPSFSSTGRGDNQRLEFLGDRVLGLVMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F     A+EG L+ R+N+LV  ETC++VARE+D+ + +++     K       ++ AD +
Sbjct: 61  FEADPEAREGLLAPRYNALVRKETCAEVAREIDIGAVLKLGRSEMKTGGRRKEALLADAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+Y D G   A   V  +W +R     +  RDAKT LQE A A+    P Y+   
Sbjct: 121 EAVIAAIYRDAGFARAREVVRAHWGKRIGAVAEDARDAKTALQELAQARGEPPPGYREIS 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           R GPDH P FT+ V ++    A+    SKR AEQ AA  +L R 
Sbjct: 181 RHGPDHQPLFTIEVRLATGESARAEAGSKRQAEQAAARTLLDRL 224


>gi|52842090|ref|YP_095889.1| ribonuclease III [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|81377263|sp|Q5ZUD5|RNC_LEGPH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|52629201|gb|AAU27942.1| ribonuclease III [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 224

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 120/225 (53%), Gaps = 6/225 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             +    L +R+ Y F N + L++ALTH S      ++YER EFLGD IL  +I+  LFN
Sbjct: 1   MKINLERLCRRLNYHFNNIAYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFN 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+LS   + LV  E  +++ARE+DL  ++ +     +      TSI AD +E+
Sbjct: 58  RFPLHSEGQLSRLRSFLVKGEMLAEIAREIDLGDYLFLGQGELRSGGFRRTSILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++AA+YLDGG+  A   +   +  R          +DAKT+LQE+  A     PEY +T 
Sbjct: 118 ILAAIYLDGGMIAAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTK 177

Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
             G +H   F V   I G+   A G   ++R AEQ+AA  +L++ 
Sbjct: 178 IEGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLEQL 222


>gi|91977122|ref|YP_569781.1| ribonuclease III [Rhodopseudomonas palustris BisB5]
 gi|91683578|gb|ABE39880.1| RNAse III [Rhodopseudomonas palustris BisB5]
          Length = 271

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 103/222 (46%), Positives = 141/222 (63%), Gaps = 3/222 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +E+RIG+ FA+ SLL  ALTH S    + +  +SY+RLEFLGD +LGL++S +L+  F +
Sbjct: 45  IEQRIGHTFADPSLLNTALTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLYRAFPN 104

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EGELS R   LV  ETC+ +AR LDL   I++ +           S+  D+ E++I A
Sbjct: 105 ADEGELSKRLADLVRKETCADIARSLDLLDGIKLGTVGAGAGARLRKSVLGDICEAVIGA 164

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           ++LDGG   A  FV + W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP H
Sbjct: 165 VFLDGGYPAAADFVQRNWTERMRKPARSLRDPKTVLQEWAQGKGLPTPVYREVERTGPHH 224

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           DP+F V V + GL PA+G+  SKRAAE+VAA+ +L REG+ T
Sbjct: 225 DPQFRVAVSLPGLEPAEGVGGSKRAAEKVAASVMLAREGVST 266


>gi|51245097|ref|YP_064981.1| ribonuclease III [Desulfotalea psychrophila LSv54]
 gi|81642476|sp|Q6ANV0|RNC_DESPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|50876134|emb|CAG35974.1| related to ribonuclease III [Desulfotalea psychrophila LSv54]
          Length = 241

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 5/227 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTL 58
           +  +++  EK+I Y F +  LL+KAL HSS +       ++ ERLEF+GD +L L++   
Sbjct: 12  NRQKHAEFEKKINYKFIDLRLLQKALIHSSYAFEQAQAGKNNERLEFVGDAVLDLVVGNA 71

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  F   +EGEL+    +LV+    + +AR+++L  F+ +            +SI +  
Sbjct: 72  LYRRFPEMREGELTRLRAALVNEGHLATMARKINLGYFLCLGKGEDNSKGREKSSILSCA 131

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYK 176
            E++I A++ DGG +     V++++     +  +     DAK+ LQE    K    P Y+
Sbjct: 132 YEAVIGAIFQDGGYDAVAALVERFFLPVIDRRKEDLLLADAKSRLQEILQEKHNEGPSYR 191

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GP H  RFT+ V         G   SK+ AEQ  AA  +K+ 
Sbjct: 192 LDNEEGPSHKKRFTISVLFRDEVLGTGEAGSKKEAEQRGAALAIKKI 238


>gi|238916990|ref|YP_002930507.1| ribonuclease III [Eubacterium eligens ATCC 27750]
 gi|238872350|gb|ACR72060.1| ribonuclease III [Eubacterium eligens ATCC 27750]
          Length = 237

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 106/228 (46%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M     S   + IGY F + SLLE ALTHSS ++  ++      ER+EFLGD +L L  S
Sbjct: 1   MHNKNLSVFMQTIGYDFKDISLLEVALTHSSYANEQKKGNCCDNERMEFLGDAVLELSSS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++ +     EG+++    S+V   T +  AR + L +FIR+             SI +
Sbjct: 61  DYIYKNHAEMAEGKMTRLRASIVCEPTLALCARAIKLDTFIRLGKGEELTGGRSRDSIVS 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E++I A+YLDGG   A  FV+K+          F       + +      G   +Y+
Sbjct: 121 DACEAVIGAIYLDGGFANAKEFVNKFILNDLDNKKLFFDS--KTILQEVIQGLGKEVDYE 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                GP+H+ +F V   + GL   +G   +K++A Q AA   L    
Sbjct: 179 FIGEEGPEHNKQFVVAAVVDGLFNIKGTGHTKKSASQNAAYAALIELK 226


>gi|154253314|ref|YP_001414138.1| ribonuclease III [Parvibaculum lavamentivorans DS-1]
 gi|154157264|gb|ABS64481.1| Ribonuclease III [Parvibaculum lavamentivorans DS-1]
          Length = 226

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 94/226 (41%), Positives = 130/226 (57%), Gaps = 4/226 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  L  + L+ R+ + F +  LL +ALTH S       +Y+R EFLGDR+LGL+I+  L 
Sbjct: 1   MGRLN-AALQVRLAHDFKDLGLLSRALTHPSAD---GANYQRFEFLGDRVLGLVIADWLL 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGEL++R+N+LV  E C++VA  + L + I + +   K       +I AD  E
Sbjct: 57  RDFPQADEGELAIRYNALVRKEACAEVAERIGLGACITMGAGEEKAGGRRKPAILADACE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++IAALY DGG++ A  F++  W     KS +  +DAKT LQEWA A+    P Y +  R
Sbjct: 117 AVIAALYTDGGLQAARRFIETEWAYLVEKSSEIPQDAKTALQEWAQARGQGVPTYTLVGR 176

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDH P FTV V      P +    SKR AEQ AA  +L+  G+W
Sbjct: 177 SGPDHAPEFTVEVSAGKAKPLRAQGNSKRQAEQTAARALLEALGVW 222


>gi|15672784|ref|NP_266958.1| ribonuclease III [Lactococcus lactis subsp. lactis Il1403]
 gi|13878708|sp|Q9CHD0|RNC_LACLA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|12723723|gb|AAK04900.1|AE006313_7 ribonuclease III [Lactococcus lactis subsp. lactis Il1403]
 gi|326406354|gb|ADZ63425.1| ribonuclease III [Lactococcus lactis subsp. lactis CV56]
          Length = 231

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 103/223 (46%), Gaps = 9/223 (4%)

Query: 8   TLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
            L+K++    G  F +  LL+ A THSS ++  +     + ERLEFLGD  L L+IS  L
Sbjct: 3   KLQKKLKNDYGLVFNDEDLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYL 62

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  +    EGELS   +S+V  E+ +  +R      F+R+     K       +   ++ 
Sbjct: 63  YRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLF 122

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+ + AL++D G++    F+                 D KTELQE        T  YK+ 
Sbjct: 123 EAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVIDYKTELQEVLQIGGETTISYKIL 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GP HD  F   V  +G    +G+  SK+ AEQ AA   +K
Sbjct: 183 KEEGPAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225


>gi|163783627|ref|ZP_02178616.1| RNase III [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881120|gb|EDP74635.1| RNase III [Hydrogenivirga sp. 128-5-R1-1]
          Length = 222

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 13/224 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFD 64
           +  +E+RIGY F N+ LL++A TH S +       YE LEFLGD +L  +I  +L   F 
Sbjct: 2   FEEVEERIGYTFKNKDLLKQAFTHVSYARDAGVSHYEILEFLGDALLNFIIVDILVKEFP 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+     L+S E  +++A+ELDL  +I +S            SI  DV E+L A
Sbjct: 62  EKREGALASLKAYLISEEFFNELAQELDLPRYILMSR------GKKNVSIIGDVFEALWA 115

Query: 125 ALYLDGGIEVA-----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           A+Y+D G +          + K      ++S + R+D KT LQE    ++   P Y+V  
Sbjct: 116 AVYVDSGRDCNLVKELFNRLFKDRIIETIRSHRIRKDYKTMLQEITQKRWRERPHYRVIS 175

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP+H   FTV   I G   A G   SK+ AEQ AA  ++++ 
Sbjct: 176 VEGPEHAKTFTVESSIKG-VSAVGRGKSKKEAEQEAAKRLVEKL 218


>gi|317009322|gb|ADU79902.1| ribonuclease III [Helicobacter pylori India7]
          Length = 239

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/218 (34%), Positives = 112/218 (51%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F    E
Sbjct: 21  LEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQYDE 78

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    S+VS    +++A+ + L  ++RVSS           SI +   E+L+A +YL
Sbjct: 79  GKLSKLRASIVSVHGFTKLAKAIALQDYLRVSSSEEVSNGREKPSILSSAFEALMAGVYL 138

Query: 129 DGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           + G+      +     +   +        D KT LQE   A+F V P Y++    GPDH 
Sbjct: 139 EAGLAKVHKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGPDHH 198

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             F + + I     A     SK+ AEQ  A + L++  
Sbjct: 199 KEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKLK 236


>gi|147678073|ref|YP_001212288.1| ribonuclease III [Pelotomaculum thermopropionicum SI]
 gi|189043329|sp|A5D1H6|RNC_PELTS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|146274170|dbj|BAF59919.1| dsRNA-specific ribonuclease [Pelotomaculum thermopropionicum SI]
          Length = 241

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           + + L+ R+G A+ +  LL +ALTHSS ++  +    E+ +RLEFLGD +L L +S  L+
Sbjct: 7   KLTLLKNRLGIAWRDEGLLTRALTHSSFTYENRQNGLENNQRLEFLGDAVLELAVSDYLY 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+L+    S+V   + ++VAREL+L + + +     +       SI AD  E
Sbjct: 67  RSKPEMDEGDLTKLRASVVCEPSLARVARELELGTCLYMGKGEERSGGRDRPSILADAFE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           +L+ A+YLD G+E A     KY         + R  RD KTELQE    + G   +Y + 
Sbjct: 127 ALLGAVYLDQGLEKAAGLAIKYLAPLIGDVLEGRLERDYKTELQELVQQRGGEQVQYVIL 186

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              GPDH   FT  V   G+   QG   SK+ AEQ AA + L +
Sbjct: 187 KEEGPDHHKSFTAGVLYRGVLVGQGTGRSKKEAEQQAAKKALMK 230


>gi|109947401|ref|YP_664629.1| ribonuclease III [Helicobacter acinonychis str. Sheeba]
 gi|122973320|sp|Q17XJ6|RNC_HELAH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|109714622|emb|CAJ99630.1| ribonuclease III (RNase III) [Helicobacter acinonychis str. Sheeba]
          Length = 234

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 80/233 (34%), Positives = 118/233 (50%), Gaps = 11/233 (4%)

Query: 1   MSALR-------YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGL 53
           M           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL
Sbjct: 1   MKNKNNKLADCPYITLEKALGYSFKDKHLLEQALTHKSC--KLALNNERLEFLGDAVLGL 58

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           +I  LL++ F    EG+LS    S+VSA+  +++AR + L  ++RVSS           S
Sbjct: 59  VIGELLYHKFYQYDEGKLSKLRASIVSAQGFTKLARAISLQDYLRVSSSEETSKGREKPS 118

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGV 171
           I +   E+L+A +YL+ G++     +     +   +        D KT LQE   A+F V
Sbjct: 119 ILSSAFEALMAGVYLEAGLDKVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQAQFCV 178

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            P Y++    GP H   F +V+ I     A     SK+ AEQ  A + L++  
Sbjct: 179 IPTYQLLKEKGPAHHKEFEMVLYIQNQMYATAKGKSKKEAEQQCAYQALQKLK 231


>gi|222055246|ref|YP_002537608.1| Ribonuclease III [Geobacter sp. FRC-32]
 gi|221564535|gb|ACM20507.1| Ribonuclease III [Geobacter sp. FRC-32]
          Length = 238

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 84/226 (37%), Positives = 124/226 (54%), Gaps = 9/226 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61
            + LEK I Y F ++SLL +ALTH S  +      ++  +RLEFLGD ++GL++S  LF+
Sbjct: 9   IAALEKLINYDFTDKSLLVEALTHPSFVNESGGKVRQDNQRLEFLGDAVVGLVLSHDLFS 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  ++EGEL+    SLV   + + +AR +DL + +++     +       S+ AD  E+
Sbjct: 69  RFPDSREGELTKLRASLVDEASLAILARAIDLGAHLKLGRGEERSGGRTKPSLLADAYEA 128

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTF 179
           L+AA+YLDGGIE A   +  ++     K       RD KTE QE AH    + P Y +  
Sbjct: 129 LLAAVYLDGGIEPAAAIIKSHFASFMEKRNIRTSGRDFKTEFQELAHRLRSLAPRYLLQG 188

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKR 222
            SGPDH   F+V V I      +G+  SK+ AEQ AA +    LK+
Sbjct: 189 VSGPDHQRIFSVAVFIGEEFMGEGLAKSKKEAEQAAAEQGIAFLKK 234


>gi|54294754|ref|YP_127169.1| hypothetical protein lpl1831 [Legionella pneumophila str. Lens]
 gi|81368418|sp|Q5WVI4|RNC_LEGPL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|53754586|emb|CAH16070.1| hypothetical protein lpl1831 [Legionella pneumophila str. Lens]
          Length = 224

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             +    L +R+ Y F N + L++ALTH S      ++YER EFLGD IL  +I+  LFN
Sbjct: 1   MKINLERLCRRLNYHFNNMAYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFN 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+LS   + LV  E  +++ARE+ L  ++ +     +      TSI AD +E+
Sbjct: 58  RFPLHSEGQLSRLRSFLVKGEMLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++AA+YLDGG+  A   +   +  R          +DAKT+LQE+  A     PEY +T 
Sbjct: 118 ILAAIYLDGGMTAAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTK 177

Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
             G +H   F V   I G+   A G   ++R AEQ+AA  +L++ 
Sbjct: 178 VEGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLEQL 222


>gi|208434584|ref|YP_002266250.1| ribonuclease III [Helicobacter pylori G27]
 gi|226741372|sp|B5Z735|RNC_HELPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|208432513|gb|ACI27384.1| ribonuclease III [Helicobacter pylori G27]
          Length = 239

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    ++VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRAAIVSAHGFTKLAKAIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +   +        D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH   F + + I     A     SK+ AEQ  A   L++  
Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQKLK 236


>gi|312143881|ref|YP_003995327.1| ribonuclease III [Halanaerobium sp. 'sapolanicus']
 gi|311904532|gb|ADQ14973.1| ribonuclease III [Halanaerobium sp. 'sapolanicus']
          Length = 238

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/212 (35%), Positives = 109/212 (51%), Gaps = 6/212 (2%)

Query: 18  ANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           +N+ LL++ALTH S  +  +       ERLEFLGD +L L +ST +FN F    EGEL+ 
Sbjct: 22  SNKKLLQRALTHKSFPNENKNLSIKDNERLEFLGDSVLSLAVSTYIFNKFSDFPEGELAK 81

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
               +VSA   ++ A++L+L  ++ +             SI AD +E++  ALYLD G  
Sbjct: 82  MRAVVVSAPILAEAAKKLELGRYLFLGKGEEMTGGRERDSILADSMEAIFGALYLDQGFT 141

Query: 134 VAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
            A  FV K  K+   +   G   +D KT LQE       + PEY+V    GPDH+  F V
Sbjct: 142 AASDFVLKILKEDIKEVAMGNHIQDYKTMLQEIIQQDGNIRPEYEVIDEKGPDHNKTFIV 201

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            V++   +   G   SK+ AEQ AA   L + 
Sbjct: 202 AVKLKENSLGSGQGSSKKEAEQEAAKFALHKL 233


>gi|307637352|gb|ADN79802.1| Ribonuclease III [Helicobacter pylori 908]
 gi|325995944|gb|ADZ51349.1| Ribonuclease III [Helicobacter pylori 2018]
 gi|325997538|gb|ADZ49746.1| Ribonuclease III [Helicobacter pylori 2017]
          Length = 239

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++ VSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLHVSSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      + K   +   +        D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLK 236


>gi|260663569|ref|ZP_05864459.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN]
 gi|260552110|gb|EEX25163.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN]
          Length = 232

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/220 (30%), Positives = 103/220 (46%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L K  G  F N +LL +A T +S  + +     + YER+EFLGD +L L +S  ++  + 
Sbjct: 9   LAKTYGIHFNNPALLAEAFTQASYVNEHPHENLKYYERIEFLGDAVLQLFVSEYIYRRYP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G+L+    ++V  ++ S+ A+E     +IR+             S+  D+ ES I 
Sbjct: 69  ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRASLLCDIFESFIG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ALYLD G +    F+      +          DAKT LQE+      V  EY +    G 
Sbjct: 129 ALYLDQGRQAVEQFIQTVIFPKLDLGWFDHAVDAKTSLQEFLQRNGDVAIEYDLLSEGGT 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++DP F V V + G   A G   SK+ AE  AA   L++ 
Sbjct: 189 ENDPVFEVEVTVDGKKVATGQGSSKKHAEMDAAKHALEKL 228


>gi|317010882|gb|ADU84629.1| ribonuclease III [Helicobacter pylori SouthAfrica7]
          Length = 234

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 13  YITLEKALGYSFKDKHLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 70

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA+  +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 71  YDEGKLSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEETSKGREKPSILSSAFEALMAG 130

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G++     +     +   +        D KT LQE   A+F V P Y++    GP
Sbjct: 131 VYLEAGLDKVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQAQFCVIPTYQLLKEKGP 190

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            H   F + + I     A     SK+ AEQ  A + L++  
Sbjct: 191 AHHKEFEMALYIQNQMYATAKGKSKKEAEQQCAYQALQKLK 231


>gi|184155714|ref|YP_001844054.1| ribonuclease III [Lactobacillus fermentum IFO 3956]
 gi|227515694|ref|ZP_03945743.1| ribonuclease III [Lactobacillus fermentum ATCC 14931]
 gi|238692982|sp|B2GD42|RNC_LACF3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|183227058|dbj|BAG27574.1| ribonuclease III [Lactobacillus fermentum IFO 3956]
 gi|227085942|gb|EEI21254.1| ribonuclease III [Lactobacillus fermentum ATCC 14931]
 gi|299783404|gb|ADJ41402.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus
           fermentum CECT 5716]
          Length = 232

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/220 (30%), Positives = 103/220 (46%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L K  G  F N +LL +A T +S  + +     + YER+EFLGD +L L +S  ++  + 
Sbjct: 9   LAKTYGIHFNNPALLAEAFTQASYVNEHPHENLKYYERIEFLGDAVLQLFVSEYIYRRYP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G+L+    ++V  ++ S+ A+E     +IR+             S+  D+ ES I 
Sbjct: 69  ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRASLLCDIFESFIG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ALYLD G +    F+      +          DAKT LQE+      V  EY +    G 
Sbjct: 129 ALYLDQGRQAVEQFIQTVIFPKLDLGWFDHAVDAKTSLQEFLQRNGDVAIEYDLLSEGGT 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++DP F V V + G   A G   SK+ AE  AA   L++ 
Sbjct: 189 ENDPVFEVEVTVDGKKVATGQGSSKKHAEMEAAKHALEKL 228


>gi|229822809|ref|ZP_04448879.1| hypothetical protein GCWU000282_00098 [Catonella morbi ATCC 51271]
 gi|229787622|gb|EEP23736.1| hypothetical protein GCWU000282_00098 [Catonella morbi ATCC 51271]
          Length = 247

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 6/222 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLIS 56
           M+      +EK++   F    L+++A  H+S ++     +   YERLEFLGD +L LL S
Sbjct: 3   MNRT-IRVIEKQLNLTFKKPELIQQAFRHTSYANEQARRHLPHYERLEFLGDAVLELLSS 61

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L++ + +  EG+L+     +V  ++ + +AR+L    F+++             SI A
Sbjct: 62  EFLYHSYPNLPEGKLTRMRAQIVQEKSLAYLARQLKFNQFLQLGKGEELSGGRERDSILA 121

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E+++ A+Y D G+EVA  ++++    +              L +    K G      
Sbjct: 122 DCFEAVLGAIYEDQGLEVAKDYLNRVMFSQHQLLLGRVTQDHKTLFQERVQKQGTVQIDY 181

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
                 GP HD  FTV + ++    A G   SK+ AE  AA 
Sbjct: 182 RLKDKQGPAHDQIFTVELYVNDQHIATGQGSSKKQAEMQAAE 223


>gi|262170590|ref|ZP_06038268.1| ribonuclease III [Vibrio mimicus MB-451]
 gi|261891666|gb|EEY37652.1| ribonuclease III [Vibrio mimicus MB-451]
          Length = 221

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S      +  ERLEFLGD IL  +I+  L++ F   
Sbjct: 2   NKLTSKLGYTFKEIELLNLALTHRSA---NGKHNERLEFLGDSILSFVIADELYHRFPKV 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 59  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118

Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A        + +   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 119 YLDSDLETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 218


>gi|258622345|ref|ZP_05717370.1| Ribonuclease 3 [Vibrio mimicus VM573]
 gi|258626729|ref|ZP_05721551.1| Ribonuclease 3 [Vibrio mimicus VM603]
 gi|258580985|gb|EEW05912.1| Ribonuclease 3 [Vibrio mimicus VM603]
 gi|258585361|gb|EEW10085.1| Ribonuclease 3 [Vibrio mimicus VM573]
          Length = 225

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S      +  ERLEFLGD IL  +I+  L++ F   
Sbjct: 6   NKLTSKLGYTFKEIELLNLALTHRSA---NGKHNERLEFLGDSILSFVIADELYHRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A        + +   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSDLETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222


>gi|294102050|ref|YP_003553908.1| ribonuclease III [Aminobacterium colombiense DSM 12261]
 gi|293617030|gb|ADE57184.1| ribonuclease III [Aminobacterium colombiense DSM 12261]
          Length = 240

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
            ++ ++R+GY F+ + +L++ALTH+S +H        ERLEFLGD +L L++S  LFN +
Sbjct: 16  LASFQERLGYLFSKKEILQEALTHASYAHEKGLHFHNERLEFLGDAVLELIVSANLFNGY 75

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+   ++LV     S   + + L   IR+   L +   S   SI AD  E+++
Sbjct: 76  PDVDEGTLTRYRSNLVCKNALSVWGKSIGLPQIIRLGKGLEQQGAS--ASIIADTSEAVL 133

Query: 124 AALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A++ DGG   A   V +Y + Q  + +     D K+ +QE    +    P Y V    G
Sbjct: 134 GAVFSDGGFAAAQNVVRRYLFFQSNINAYDKNSDPKSLIQEETQKRGLGQPCYVVISTEG 193

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           P H P FTV ++I G     G   S + AE +AA   LK+ G+
Sbjct: 194 PPHMPIFTVQLKIDGQLYGSGQGHSIKVAETLAAQRALKQVGL 236


>gi|262166502|ref|ZP_06034239.1| ribonuclease III [Vibrio mimicus VM223]
 gi|262026218|gb|EEY44886.1| ribonuclease III [Vibrio mimicus VM223]
          Length = 225

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S      +  ERLEFLGD IL  +I+  L++ F   
Sbjct: 6   NKLTSKLGYTFKEIELLNLALTHRSA---NGKHNERLEFLGDSILSFVIADELYHRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A        + +   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSELETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222


>gi|283798076|ref|ZP_06347229.1| ribonuclease III [Clostridium sp. M62/1]
 gi|291074218|gb|EFE11582.1| ribonuclease III [Clostridium sp. M62/1]
 gi|295091753|emb|CBK77860.1| RNAse III [Clostridium cf. saccharolyticum K10]
 gi|295114861|emb|CBL35708.1| RNAse III [butyrate-producing bacterium SM4/1]
          Length = 234

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M    +  LE +I Y F ++SL+E A++HSS ++          ERLEFLGD +L ++ S
Sbjct: 1   MPREHFRELEDKIHYCFKDKSLIELAMSHSSYANEKHLGKLGCNERLEFLGDAVLEIVSS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF+ F    EG+L+    S+V   T +  A ++ L  ++ +             S+ +
Sbjct: 61  DFLFHRFPDMPEGDLTKTRASMVCEPTLAYCAEQIGLGGYLLLGKGEDATGGRTRNSVVS 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LI A+YLDGG   A  F+  Y         K   D+KT LQE   A+      Y+
Sbjct: 121 DAMEALIGAIYLDGGFSCAKEFILNYVLNDMEHK-KLFYDSKTILQEMVQARGTELLSYE 179

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +    GPDH+  F V   I     ++G   +K+AAEQ+AA + + +  
Sbjct: 180 LLKEEGPDHNKTFEVAALIGEREVSRGAGRTKKAAEQMAAYQAILKLK 227


>gi|260771275|ref|ZP_05880202.1| ribonuclease III [Vibrio furnissii CIP 102972]
 gi|260613872|gb|EEX39064.1| ribonuclease III [Vibrio furnissii CIP 102972]
          Length = 225

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 119/226 (52%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++   S LE ++GY F N  L+  ALTH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PISRLETKLGYQFNNAELISLALTHRSA---NGKHNERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  IEVA   V  +++ R         ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDIEVARATVLSWYQSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FTV  +I+G+  P  G   S+R AEQ AA   L++ 
Sbjct: 177 NIKGEAHNQEFTVACDIAGIGAPVIGKGTSRRKAEQAAAETALEQL 222


>gi|315638039|ref|ZP_07893224.1| ribonuclease III [Campylobacter upsaliensis JV21]
 gi|315481887|gb|EFU72506.1| ribonuclease III [Campylobacter upsaliensis JV21]
          Length = 224

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 122/222 (54%), Gaps = 4/222 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   LE ++ Y F ++ LL  ALTH S   +Y  + ERLEFLGD +L L++   LF+ F 
Sbjct: 3   KLELLEAKLNYKFKDQKLLIYALTHKSAKKNY--NNERLEFLGDAVLDLVVGEFLFHKFK 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+LS    +LV+ ++ +++A  L+L +FI +S   + +      SI +D  E+LI 
Sbjct: 61  NEAEGDLSKLRAALVNEKSFAKIATSLNLGAFIFMSIAEQNNGGKTKPSILSDAFEALIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL+L+ G   A     +  ++           +D KT+LQE   AK G+TPEY+     G
Sbjct: 121 ALHLEAGFIKAKEIALRLIEENFPNIDAKSLFKDYKTKLQEITQAKMGLTPEYETLRAFG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH   F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 181 PDHQKSFEIALNLEGKEMARAIASSKKEAQQMAAKLTLEKLG 222


>gi|108563072|ref|YP_627388.1| ribonuclease III [Helicobacter pylori HPAG1]
 gi|107836845|gb|ABF84714.1| ribonuclease III [Helicobacter pylori HPAG1]
          Length = 240

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 19  YTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 76

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 77  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 136

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +   +        D KT LQE   A+F V P Y++    GP
Sbjct: 137 VYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 196

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH   F + + I     A     SK+ AEQ  A   L++  
Sbjct: 197 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQKLK 237


>gi|325290420|ref|YP_004266601.1| RNAse III [Syntrophobotulus glycolicus DSM 8271]
 gi|324965821|gb|ADY56600.1| RNAse III [Syntrophobotulus glycolicus DSM 8271]
          Length = 259

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 11/226 (4%)

Query: 7   STLEKRIGYAFANRS--LLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60
           +    ++G    N    LL  ALTH S +       +E+ +RLEFLGD +L  +I   L+
Sbjct: 34  TAFITKLGLE--NPENQLLYTALTHPSYTFENPASGRENNQRLEFLGDAVLDFVIGEYLY 91

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EGEL+    ++V+  T ++ AR + +   + +    +        SI AD +E
Sbjct: 92  LKYRDKPEGELTKMRAAVVNESTLARQARGIGIGQALFLGKGEQYSGGRERASILADALE 151

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++I A+YL  G E   +F+ K          K        + +    K  +   Y++   
Sbjct: 152 AVIGAVYLQYGFEEVRSFILKMLVPEIEAIDKGNYGDFKTILQERAQKEDMEVSYRIIDE 211

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            GPDH+  FT  V +      +G   +K+ AEQ AA   L+   +W
Sbjct: 212 QGPDHNKLFTAGVYVQNNFYGKGTGKTKKEAEQHAARLALE---LW 254


>gi|291459099|ref|ZP_06598489.1| ribonuclease III [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418353|gb|EFE92072.1| ribonuclease III [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 234

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 8/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M  L    LE+++ Y+F +R LL  ALTH S S+   +    S +RLEFLGD +L L  S
Sbjct: 1   MDRLSL--LEEKLAYSFRDRELLLHALTHPSYSNEQGDPKEASNQRLEFLGDAVLELAAS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L++     +EG ++    +LV   T ++ AR+L L  ++ +     ++      S+ +
Sbjct: 59  DFLYHRVPVIQEGVMTKLRAALVCEPTLAEAARKLSLGDYLVLGRGEGREGIQLRDSVLS 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E++I A+YLDGG   A  F+ +          K        + +   +K  ++  Y 
Sbjct: 119 DAFEAVIGAIYLDGGFSAAQCFIKRLVLSDIEN--KSLYRDAKTMLQEYVSKQRLSLRYA 176

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +   SGP H+  + V   I      +G   SK+ AEQ AA + L +  
Sbjct: 177 LLEESGPCHERFYRVSALIEEKEYGRGEGSSKKKAEQAAAYQALLKIK 224


>gi|302874772|ref|YP_003843405.1| ribonuclease III [Clostridium cellulovorans 743B]
 gi|307690613|ref|ZP_07633059.1| ribonuclease III [Clostridium cellulovorans 743B]
 gi|302577629|gb|ADL51641.1| ribonuclease III [Clostridium cellulovorans 743B]
          Length = 235

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 1   MSA--LRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLIS 56
           M+    R   LE+++  +F N  LL  ALTHSS  +   + +  ERLEFLGD +L L IS
Sbjct: 1   MNQRIKRIRILEEQLNVSFENIDLLNTALTHSSFVNQKKHIDYNERLEFLGDSVLQLTIS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF       EGEL+   + +V   +   V R+ ++ +F+ +S           TSI A
Sbjct: 61  EYLFKELHGKSEGELTRLRSLIVCENSLHSVGRDWNIGNFLLMSKGEELTGGRSRTSILA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPE 174
           D VE++IAA+YLD G + A  F+  ++K+        K   D KT LQE       ++  
Sbjct: 121 DAVEAVIAAIYLDKGYDAAREFILLHFKEVINLALDNKIVLDYKTRLQEVLQKDGEISIA 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           YK+    GP H  RF V +E++      G   SK+ AEQ+AA EVL
Sbjct: 181 YKLEKYDGPPHRRRFFVNLEVANKVLGSGEGFSKKEAEQMAAKEVL 226


>gi|291524528|emb|CBK90115.1| RNAse III [Eubacterium rectale DSM 17629]
 gi|291527954|emb|CBK93540.1| RNAse III [Eubacterium rectale M104/1]
          Length = 227

 Score =  143 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/209 (32%), Positives = 102/209 (48%), Gaps = 6/209 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
             +  + +IGY F NR LLE+ALTHSS ++          ERLEFLGD +L ++ S  LF
Sbjct: 3   DLNEFQSKIGYTFKNRHLLEQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSEFLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++    EGEL+    S+V   T +   + LDL  ++R+             SI +D +E
Sbjct: 63  INYPQKPEGELTKLRASIVCEPTLALCTKPLDLGKYLRLGRGEDHTGGRKRKSILSDALE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++I A+YLDGG   A  FV ++          F       + +           Y++   
Sbjct: 123 AVIGAIYLDGGFTNAKEFVLRFIMTDIENKQLFYDS--KTILQELIQGRHEQLSYELIDE 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           SGPDHD +FTV V + G   ++G   +K+
Sbjct: 181 SGPDHDKQFTVAVLVDGERVSEGEGHTKK 209


>gi|238923872|ref|YP_002937388.1| ribonuclease III [Eubacterium rectale ATCC 33656]
 gi|238875547|gb|ACR75254.1| ribonuclease III [Eubacterium rectale ATCC 33656]
          Length = 237

 Score =  143 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/209 (32%), Positives = 102/209 (48%), Gaps = 6/209 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
             +  + +IGY F NR LLE+ALTHSS ++          ERLEFLGD +L ++ S  LF
Sbjct: 13  DLNEFQSKIGYTFKNRHLLEQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSEFLF 72

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++    EGEL+    S+V   T +   + LDL  ++R+             SI +D +E
Sbjct: 73  INYPQKPEGELTKLRASIVCEPTLALCTKPLDLGKYLRLGRGEDHTGGRKRKSILSDALE 132

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++I A+YLDGG   A  FV ++          F       + +           Y++   
Sbjct: 133 AVIGAIYLDGGFTNAKEFVLRFIMTDIENKQLFYDS--KTILQELIQGRHEQLSYELIDE 190

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           SGPDHD +FTV V + G   ++G   +K+
Sbjct: 191 SGPDHDKQFTVAVLVDGERVSEGEGHTKK 219


>gi|51598958|ref|YP_073146.1| ribonuclease III [Borrelia garinii PBi]
 gi|219684131|ref|ZP_03539075.1| ribonuclease III [Borrelia garinii PBr]
 gi|81609804|sp|Q660G7|RNC_BORGA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|51573529|gb|AAU07554.1| ribonuclease III [Borrelia garinii PBi]
 gi|219672120|gb|EED29173.1| ribonuclease III [Borrelia garinii PBr]
          Length = 245

 Score =  143 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59
             + S   + +   F N  LL  AL+HSS S+      ++ ERLEFLGD +L L+I+  L
Sbjct: 15  KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKADNNERLEFLGDSVLNLIITDHL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EGELS   + +VS ++ S +ARE+DL S+I +      +       I AD +
Sbjct: 75  YKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134

Query: 120 ESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + A+YLD G  +A  FV        R + +    +D K+ LQE+   K+ ++P YK+
Sbjct: 135 EAFVGAIYLDSGFSMATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDHD  F V + +     + G   SK+ AE  AA   LK  
Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240


>gi|258514469|ref|YP_003190691.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
 gi|257778174|gb|ACV62068.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
          Length = 259

 Score =  143 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 113/225 (50%), Gaps = 6/225 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
           +      L +++G A+ + +LL +ALTHSS  +        + +RLEFLGD +L LL+S 
Sbjct: 4   NQDNIMQLMQQVGVAWNDENLLWQALTHSSYVYESGSAAHTNNQRLEFLGDAVLELLVSG 63

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L++ +    EGEL+    ++V   + ++VAR+L+L   +R+     +       SI AD
Sbjct: 64  YLYSSYPECAEGELTKLRAAIVCEPSLAKVARQLNLGYCLRMGKGEERSGGRERPSILAD 123

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY 175
             E+L+ A+YLD G+E    F  K+          G+  RD KTELQE    K      Y
Sbjct: 124 SFEALLGAVYLDQGLEKTRMFALKFLAPVINDVLEGRVDRDYKTELQEMLQKKSPEPISY 183

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            +    GPDH   FT  V   G+   QG   SK+ AEQ AA   L
Sbjct: 184 VILNEEGPDHQKLFTAGVVYCGIIIGQGTGRSKKEAEQQAAKIAL 228


>gi|32490945|ref|NP_871199.1| hypothetical protein WGLp196 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30173145|sp|Q8D305|RNC_WIGBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|25166151|dbj|BAC24342.1| rnc [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 226

 Score =  143 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 6/229 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  L ++ L+K++GY F N  +L++ALTH S S    ++ ERLEFLGD IL  +IS  L+
Sbjct: 1   MKNLFFNKLQKKMGYLFHNNIILKQALTHRSFSS---KNNERLEFLGDSILNYIISDALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N+F +  EG+LS   + LV   T +++ARE  L  ++ +     K       SI ++ +E
Sbjct: 58  NNFTNIPEGKLSQMRSYLVRGNTLAEIAREFCLGDYLILGIGEVKTGGKNRDSILSNAME 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I  ++LD  I      V  ++K R         ++D KT LQE+        P+Y + 
Sbjct: 118 AIIGGIFLDSNINKTHEIVISWYKNRLYSMSLKNLKKDPKTRLQEYLQGNKFSLPQYYIK 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGIW 226
             +G  H+  FT+   I  L  +  G   ++R AEQ AA + L    I 
Sbjct: 178 NITGESHNQEFTICCFIDDLKKSVIGYGKTRRKAEQSAAKQALLLFNIL 226


>gi|39935763|ref|NP_948039.1| ribonuclease III [Rhodopseudomonas palustris CGA009]
 gi|192291350|ref|YP_001991955.1| ribonuclease III [Rhodopseudomonas palustris TIE-1]
 gi|81562548|sp|Q6N6C1|RNC_RHOPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|39649616|emb|CAE28138.1| putative ribonuclease III [Rhodopseudomonas palustris CGA009]
 gi|192285099|gb|ACF01480.1| Ribonuclease III [Rhodopseudomonas palustris TIE-1]
          Length = 272

 Score =  143 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 105/221 (47%), Positives = 141/221 (63%), Gaps = 2/221 (0%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +E+R+G++FA+ SLL  A TH S   S    +SY+RLEFLGD +LGL++S +L+  F  A
Sbjct: 47  IEQRLGHSFADPSLLTTAFTHVSALKSARRTDSYQRLEFLGDHVLGLIVSDMLYRAFPDA 106

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS R   LV  ETC+ VAR LDL   I++ +           S+  D+ E++I A+
Sbjct: 107 DEGELSKRLADLVRKETCADVARSLDLVEGIKLGTVGAGAGAKLRKSVLGDICEAVIGAI 166

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG E A  FV + W +R  K  +  RD KT LQEWA A+   TP Y+   R+GP HD
Sbjct: 167 YLDGGYEAASDFVRRNWTERMRKPARSLRDPKTVLQEWAQARGLPTPVYREVERTGPHHD 226

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           P+F V V + GL PA+G+  SKRAAE+VAA+ +L REG+ T
Sbjct: 227 PQFRVAVILPGLEPAEGLGGSKRAAEKVAASAMLAREGVGT 267


>gi|301058150|ref|ZP_07199202.1| ribonuclease III [delta proteobacterium NaphS2]
 gi|300447782|gb|EFK11495.1| ribonuclease III [delta proteobacterium NaphS2]
          Length = 236

 Score =  143 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61
           + +L + +GY+F + +L+ +A  HSS  +       E  ERLEFLGD +L L +S LL  
Sbjct: 10  FKSLCETLGYSFNDIALVIQAFRHSSYVNEQMVPGLEDNERLEFLGDAVLDLAVSHLLME 69

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
               A EGELS   + +V       VA  L+L  ++ +     + +     SI ADV E+
Sbjct: 70  RNPHANEGELSRFRSMVVDEAGLHDVATRLELGRYLLLGKGEDQSLGRQKPSILADVTEA 129

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A+YLDGG ++    ++K +      + +    +D K+ LQE+    F   P+Y++T 
Sbjct: 130 LLGAIYLDGGFDITKKVIEKLFAPLLEKVGTDDLVQDYKSLLQEFTQQAFKCLPQYRLTE 189

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP HD  F +V+ ++G+  A+GM  SK+ AEQ AA E   R 
Sbjct: 190 EKGPAHDKVFCIVLAVNGIVMAEGMGKSKKEAEQHAAKEAFLRL 233


>gi|83855027|ref|ZP_00948557.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1]
 gi|83941550|ref|ZP_00954012.1| Ribonuclease III [Sulfitobacter sp. EE-36]
 gi|83842870|gb|EAP82037.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1]
 gi|83847370|gb|EAP85245.1| Ribonuclease III [Sulfitobacter sp. EE-36]
          Length = 228

 Score =  143 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 90/224 (40%), Positives = 130/224 (58%), Gaps = 1/224 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M         E RIGY FA   LL +A+TH+S+S + ++  +RLEFLGDR+LGL+++  L
Sbjct: 1   MKLNADLRAFEGRIGYHFAKPELLNRAVTHASMSSANRDDNQRLEFLGDRVLGLVMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                +A EG+L+ RFN+LV  E C++VARE+D+ + +++             ++  D +
Sbjct: 61  LKLDPAATEGQLAPRFNALVRKEACAEVAREIDMGAVLKLGRSEMLSGGRRKQALLGDAI 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+YLDGG + A   + + W  R ++  +  RDAKT LQEWA A+    P Y  T 
Sbjct: 121 EAIIAAVYLDGGFDEAKALILRLWGDRVMQVKQDARDAKTALQEWAQARGLPPPAYVQTD 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           R GPDH P FT+   I   A A     SKR AEQ AA  +L + 
Sbjct: 181 RQGPDHAPVFTITARIENGASAVASAPSKRQAEQAAAKTLLAQL 224


>gi|222152723|ref|YP_002561900.1| ribonuclease III [Streptococcus uberis 0140J]
 gi|254807903|sp|B9DRH1|RNC_STRU0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|222113536|emb|CAR41327.1| ribonuclease III [Streptococcus uberis 0140J]
          Length = 230

 Score =  143 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 114/226 (50%), Gaps = 9/226 (3%)

Query: 7   STLEKRIG----YAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             LE  +       F +++LLE A TH+S ++ ++       ERLEFLGD +L L+IS  
Sbjct: 2   KNLEALLKSSFAIEFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  +    EGELS + + +V  E+ +  +R      +I++     K       +I  D+
Sbjct: 62  LFKKYPHKAEGELSKQRSMIVREESLASFSRHCAFEPYIKLGKGEEKSGGRNRDTILGDL 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ + AL LD G+E    F+++    +  K + +   D KT LQE   AK     +YKV
Sbjct: 122 FEAFLGALLLDKGVEEVRRFLNQVMIPQVEKGNFEKVNDYKTSLQEILQAKGDTIIDYKV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              SGP H  +F VVV  + +  ++G+  SK+ AEQ AA   LK  
Sbjct: 182 INESGPAHAKQFEVVVLANQVELSKGIGRSKKLAEQNAAENALKAL 227


>gi|216263528|ref|ZP_03435523.1| ribonuclease III [Borrelia afzelii ACA-1]
 gi|215980372|gb|EEC21193.1| ribonuclease III [Borrelia afzelii ACA-1]
          Length = 245

 Score =  143 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59
             + S   + +   F N  LL  AL+HSS S+      ++ ERLEFLGD +L L+I+  L
Sbjct: 15  KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKSDNNERLEFLGDSVLNLIITDHL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EGELS   + +VS ++ S +ARE+DL S+I +      +       I AD +
Sbjct: 75  YKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134

Query: 120 ESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + A+YLD G  +A  FV        R + +    +D K+ LQE+   K+ ++P YK+
Sbjct: 135 EAFVGAIYLDSGFSIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPNYKL 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDHD  F V + +     + G   SK+ AE  AA   LK  
Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240


>gi|218960589|ref|YP_001740364.1| dsRNA-specific ribonuclease [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729246|emb|CAO80157.1| dsRNA-specific ribonuclease [Candidatus Cloacamonas
           acidaminovorans]
          Length = 255

 Score =  143 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 8/228 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES------YERLEFLGDRILGLLISTLL 59
            S L+K+I Y F + +LL  ALTH S  H + E       +ER+EFLGD ILG ++S  L
Sbjct: 28  LSQLQKKIDYTFHDPTLLYAALTHKSYLHRHFEDHKTPSPFERMEFLGDSILGFIVSKEL 87

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F      +EG+LS   + +VS    +  A+ +DL  ++ +S + ++   +   SI +D +
Sbjct: 88  FTRHPDEQEGKLSKLKSKIVSETYLTLKAKAIDLGKYLLLSPEEQQSGGASKPSILSDAM 147

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E+LI A+YLD GI  A  F+  +      ++       + K+ LQE+  ++    P Y  
Sbjct: 148 EALICAIYLDSGISAATRFIRNHILNNYQETVTREELVNYKSILQEYMQSRNQPPPTYVT 207

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
               GP+H   F V V         G   +K+ A Q AA    ++ GI
Sbjct: 208 VAEQGPEHHKTFVVEVRWGNKLLGTGKGNTKKNAHQEAARMACQKLGI 255


>gi|86749730|ref|YP_486226.1| ribonuclease III [Rhodopseudomonas palustris HaA2]
 gi|86572758|gb|ABD07315.1| RNAse III [Rhodopseudomonas palustris HaA2]
          Length = 271

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 102/221 (46%), Positives = 141/221 (63%), Gaps = 3/221 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +E+RIG++FA+ SLL  ALTH S    + +  +SY+RLEFLGD +LGL++S +L+  F 
Sbjct: 44  AIEQRIGHSFADPSLLNTALTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLYRAFP 103

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +A EGELS R   LV  ETC+ VAR LDL   +++ +           S+  D+ E++I 
Sbjct: 104 NADEGELSKRLADLVRKETCADVARSLDLDEGVKLGTVGAGAGARLRKSVLGDICEAVIG 163

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A++LDGG   A  FV + W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP 
Sbjct: 164 AVFLDGGYPAAAEFVQRNWTERMRKPTRSLRDPKTVLQEWAQGKGLPTPVYREVERTGPH 223

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           HDP+F V V + GL PA+G+  SKRAAE+VAA+ +L REG+
Sbjct: 224 HDPQFRVAVSLPGLDPAEGVGGSKRAAEKVAASVMLAREGV 264


>gi|81648073|sp|Q6G459|RNC_BARHE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|49238110|emb|CAF27317.1| Ribonuclease III [Bartonella henselae str. Houston-1]
          Length = 235

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 117/226 (51%), Positives = 155/226 (68%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LEK  G+ F ++  L+KALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 1   MKLPMIDQLEKLTGHYFKDKKKLKKALTHSSVQGSEQGNYERLEFLGDRVLGLLIAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR NSLV+A+TC+ +A E++L   I V  +++      +T++ ADV+E
Sbjct: 61  QLFPQASEGELSVRLNSLVNAQTCADIALEMELPVMIHVGFEMKNLKGRRLTNMYADVIE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG+E    F+ +YW+ RA +    RRDAKT+LQEWAH + GV P Y+V  R
Sbjct: 121 ALIAVIYLDGGLESVRPFIQRYWQSRAKQMDAGRRDAKTQLQEWAHVQGGVQPHYRVVKR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDP F V V I G A   G   SKR AE++AA ++L+REGIW
Sbjct: 181 SGPDHDPVFMVEVSIPGFASEIGQGNSKRCAERMAAEKILRREGIW 226


>gi|154500966|ref|ZP_02039004.1| hypothetical protein BACCAP_04652 [Bacteroides capillosus ATCC
           29799]
 gi|150269990|gb|EDM97509.1| hypothetical protein BACCAP_04652 [Bacteroides capillosus ATCC
           29799]
          Length = 223

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 78/212 (36%), Positives = 120/212 (56%), Gaps = 5/212 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
             LE+++GY F NR+LLE ALTHSS ++  +    +S ERLEFLGD +LG++ +  L+  
Sbjct: 2   EKLEEKLGYTFQNRALLENALTHSSYANENKHTGAQSNERLEFLGDSVLGMVTADYLYRV 61

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                EG+L+    +LV   +  +VA++L+L +++++             SI AD VE++
Sbjct: 62  HPDLPEGDLTRTRAALVCEGSLVEVAQQLELGTYLKLGKGEDAGGGRERPSIVADAVEAV 121

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +AA+YLDGGI  A   + ++   R  +     RD KT LQE    + G    Y++   +G
Sbjct: 122 LAAVYLDGGIGSARKIIQRFILDREEEK-SGSRDYKTALQELVQRESGQVLAYRLVGSTG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           PDH  RF V VE++G     G   SK+ AEQ+
Sbjct: 181 PDHAKRFQVEVELNGTPVGAGEGRSKKEAEQM 212


>gi|148827174|ref|YP_001291927.1| ribonuclease III [Haemophilus influenzae PittGG]
 gi|189043320|sp|A5UFI8|RNC_HAEIG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|148718416|gb|ABQ99543.1| ribonuclease III [Haemophilus influenzae PittGG]
          Length = 227

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 83/231 (35%), Positives = 122/231 (52%), Gaps = 11/231 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L    LE++IGY F + +LL++ALTH S +    +  ERLEFLGD IL   I+  L+
Sbjct: 1   MNHLD--RLERKIGYRFNDIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE
Sbjct: 56  HQFPRCNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD G+ V    +  +++Q    +K G  ++DAKT LQE+   K    P Y+V 
Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVV 175

Query: 179 FRSGPDHDPRFTVVVEIS--GLA--PAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H   FTV  ++   G           S+R AEQ AA ++LK   I
Sbjct: 176 NIQGEAHCQIFTVECKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226


>gi|300854469|ref|YP_003779453.1| dsRNA-specific ribonuclease [Clostridium ljungdahlii DSM 13528]
 gi|300434584|gb|ADK14351.1| dsRNA-specific ribonuclease [Clostridium ljungdahlii DSM 13528]
          Length = 235

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 5/230 (2%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLIST 57
           M  + +   LEK+   +F+N+ ++E ALTHSS ++  +     ERLEFLGD +L L IS 
Sbjct: 1   MEEIGFIELLEKKFNMSFSNKEIIEVALTHSSYANGRKNIKFNERLEFLGDSVLQLCISE 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  + S  EGEL+ + + +V   +   VA++ +L  +I++S           TSI AD
Sbjct: 61  YLFLKYKSKPEGELTKKRSLIVCENSLYHVAKKWNLGKYIKMSKGEEITGGRERTSILAD 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEY 175
            VE++IAA+YL+ G E  G F+ + ++     + K R   D KT+LQE       V+ EY
Sbjct: 121 CVEAIIAAIYLNFGYENTGKFIIENFQDIIENAIKNRIIMDYKTKLQETLQKDGDVSIEY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            +    GP H  +F   V         G+  SK+ +EQ AA + L +  +
Sbjct: 181 NLVKYEGPPHRRKFYTEVCTEKNVLGSGVGYSKKESEQNAAQDALMKLNV 230


>gi|225570731|ref|ZP_03779754.1| hypothetical protein CLOHYLEM_06832 [Clostridium hylemonae DSM
           15053]
 gi|225160474|gb|EEG73093.1| hypothetical protein CLOHYLEM_06832 [Clostridium hylemonae DSM
           15053]
          Length = 231

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 109/226 (48%), Gaps = 5/226 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57
                  LEKRIGY F    LL+KA+ HSS ++       E  ERLEFLGD +L L+ S 
Sbjct: 1   MNQDLKQLEKRIGYTFKEFGLLKKAMMHSSYANEQHLHKYECNERLEFLGDAVLELVSSE 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF       EGEL+    S+V     +  AREL +  F+ +             SI +D
Sbjct: 61  FLFYEHAKMPEGELTKTRASMVCEPALAFCARELQIGDFLLLGKGEDATGGRKRESITSD 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+Y+DGG   A  F++++  +      K   D+KT LQE   A F     Y +
Sbjct: 121 AMEALIGAIYIDGGFANAKEFIERFILKDLENR-KLFFDSKTILQEIVQANFKDAITYHL 179

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDHD  F V V I       G   +K+AAEQ AA + + + 
Sbjct: 180 IGEEGPDHDKSFLVAVHIGEDEYGIGRGRTKKAAEQEAAYQSILKL 225


>gi|219685563|ref|ZP_03540380.1| ribonuclease III [Borrelia garinii Far04]
 gi|219672962|gb|EED29984.1| ribonuclease III [Borrelia garinii Far04]
          Length = 246

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59
             + S   + +   F N  LL  AL+HSS S+      ++ ERLEFLGD +L L+I+  L
Sbjct: 16  KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKADNNERLEFLGDSVLNLIITDHL 75

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EGELS   + +VS ++ S VARE++L S+I +      +       I AD +
Sbjct: 76  YKTYPNKSEGELSKARSYIVSEDSLSSVAREIELGSYILLGRGEESNDGRNKKGILADAI 135

Query: 120 ESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + A+YLD G  +A  FV        R + +    +D K+ LQE+   K+ ++P YK+
Sbjct: 136 EAFVGAIYLDSGFSMATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 195

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDHD  F V + +     + G   SK+ AE  AA   LK  
Sbjct: 196 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 241


>gi|170289493|ref|YP_001739731.1| ribonuclease III [Thermotoga sp. RQ2]
 gi|238688867|sp|B1LCY9|RNC_THESQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|170176996|gb|ACB10048.1| Ribonuclease III [Thermotoga sp. RQ2]
          Length = 240

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 9/227 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58
               +K+ G  F N  LL +AL HSS ++          ES E+LEFLGD +L L +  +
Sbjct: 9   VEEFQKKTGINFKNEELLFRALCHSSYANEQNQAGRKNVESNEKLEFLGDAVLELFVCEI 68

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  +  A+ G+L+   ++  S E  + V+R+++L  F+ +     K       SI AD 
Sbjct: 69  LYKKYPEAEVGDLARVKSAAASEEVLALVSRKMNLGKFLFLGKGEEKTGGRDRDSILADA 128

Query: 119 VESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            E+L+AA+YLD G E        +  +    +  G+   D KT LQE   ++  V PEY 
Sbjct: 129 FEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYV 188

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +      D D  F V V + G   A G   +K+ AE+ AA    ++ 
Sbjct: 189 LVRTEKNDGDRIFVVEVRVDGKTIATGRGRTKKEAEKEAARIAYEKL 235


>gi|126667175|ref|ZP_01738149.1| ribonuclease III [Marinobacter sp. ELB17]
 gi|126628331|gb|EAZ98954.1| ribonuclease III [Marinobacter sp. ELB17]
          Length = 229

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 113/224 (50%), Gaps = 6/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               L++RIGY F ++  L  ALTH S  +   ++ ERLEFLGD I+ ++I+  LF  F 
Sbjct: 6   DLEPLQRRIGYQFKSQERLLLALTHRSFGN---QNNERLEFLGDSIVNMVIAEHLFRRFP 62

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A+EG+LS     +V   T +++ RE DL S++R+ S   K       SI AD VES+I 
Sbjct: 63  KAREGQLSRLRARMVKGVTLAEIGREFDLGSYLRLGSGELKSGGFRRESILADAVESVIG 122

Query: 125 ALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD       A        + + L     ++D KT LQE+  ++    P Y V    G
Sbjct: 123 AIYLDSDFVTCQAQILRWFDLRLQNLDLQDTQKDPKTRLQEYLQSRQFPLPIYDVLSVDG 182

Query: 183 PDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
             H+  F +   +S L     G   S+R AEQ AA   LK  G+
Sbjct: 183 EAHNQTFHISCALSSLGRKTTGSGNSRRIAEQQAARNALKELGV 226


>gi|270156955|ref|ZP_06185612.1| ribonuclease III [Legionella longbeachae D-4968]
 gi|289164621|ref|YP_003454759.1| ribonuclease III [Legionella longbeachae NSW150]
 gi|269988980|gb|EEZ95234.1| ribonuclease III [Legionella longbeachae D-4968]
 gi|288857794|emb|CBJ11638.1| putative ribonuclease III [Legionella longbeachae NSW150]
          Length = 227

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 120/225 (53%), Gaps = 6/225 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             +    L +R+GY F N + L++ALTH S+      +YER EFLGD IL  +I+  LF+
Sbjct: 1   MKIDLERLCRRLGYHFKNSAYLKQALTHCSVGSE---NYERFEFLGDSILSFVIANELFH 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+LS   + LV  E   ++A+E++L  F+ +     K       SI +D +E+
Sbjct: 58  RFPLQSEGQLSRLRSFLVRGEMLVELAKEIELGDFLFLGQGELKSGGFRRASILSDALEA 117

Query: 122 LIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + AA++LDGGI+ A          +  +       +DAKT+LQE+  A+    PEY +T 
Sbjct: 118 VFAAVFLDGGIDCAKEVILKLYRIRLESPNLNDCLKDAKTQLQEYLQAEKIPLPEYILTK 177

Query: 180 RSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
             G +H+  F +   ++G+     G   ++R AEQ+AA  +L+R 
Sbjct: 178 IEGDEHNQIFYITCSVNGMKQQTFGQGSNRRKAEQLAAKAMLERL 222


>gi|217032489|ref|ZP_03437981.1| hypothetical protein HPB128_156g19 [Helicobacter pylori B128]
 gi|298736360|ref|YP_003728886.1| ribonuclease 3 [Helicobacter pylori B8]
 gi|216945835|gb|EEC24456.1| hypothetical protein HPB128_156g19 [Helicobacter pylori B128]
 gi|298355550|emb|CBI66422.1| ribonuclease 3 [Helicobacter pylori B8]
          Length = 239

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 114/221 (51%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +   +        D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH   F + + I     A     SK+ AEQ  A   L++  
Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQKLK 236


>gi|317129239|ref|YP_004095521.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522]
 gi|315474187|gb|ADU30790.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522]
          Length = 253

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 5/225 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
            L Y      +     N  +  +A THSS  + ++    +  ERLEFLGD +L L IS  
Sbjct: 26  KLEYKDFLTSLEVKTTNVDIYIQAFTHSSYVNEHRIRPHDDNERLEFLGDAVLELAISQY 85

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF ++ +  EGE++    ++V   + +++A EL     + +             ++ ADV
Sbjct: 86  LFKNYANMSEGEMTKLRAAIVCEPSLAKIADELKFGERVLLGKGEEMTGGRKRPALLADV 145

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKV 177
            ES + ALYLD G++    F+      +          D K++LQE    +     +YK+
Sbjct: 146 FESFVGALYLDLGMDAVYDFLKVNVYPKIADGAFSDMMDYKSQLQELVQREGQGQIQYKI 205

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               GP H   F   V +       G   SK+ AEQ+AA + L++
Sbjct: 206 VQERGPAHAREFVSEVWLENKLLGIGAGRSKKEAEQMAAQKALEK 250


>gi|153810622|ref|ZP_01963290.1| hypothetical protein RUMOBE_01006 [Ruminococcus obeum ATCC 29174]
 gi|149833018|gb|EDM88100.1| hypothetical protein RUMOBE_01006 [Ruminococcus obeum ATCC 29174]
          Length = 223

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 77/207 (37%), Positives = 109/207 (52%), Gaps = 5/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
             LE+ IGY F N+ LL++ALTHSS ++  +       ERLEFLGD +L L+ S  L+  
Sbjct: 2   EQLEQIIGYTFQNKKLLKQALTHSSYANEKKLGKLGCNERLEFLGDAVLELISSDFLYAK 61

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGEL+ +  SLV   + +  AR+  L  ++ +             SI +D  E+L
Sbjct: 62  FTQVPEGELTKKRASLVCEPSLAYCARQFGLPQYLLLGKGENMTGGRNRDSIVSDATEAL 121

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + A+YLDGG E A  FV K+         +   D+KT LQE    K     EY +T  SG
Sbjct: 122 LGAIYLDGGFEPAKDFVLKFILNDIEHK-QLFYDSKTILQEIVQEKGIQPVEYILTGESG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDHD +FTV V+++G     G   +K+
Sbjct: 181 PDHDKQFTVSVQVNGQVVGNGTGHTKK 207


>gi|113971183|ref|YP_734976.1| ribonuclease III [Shewanella sp. MR-4]
 gi|122943634|sp|Q0HG98|RNC_SHESM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|113885867|gb|ABI39919.1| RNAse III [Shewanella sp. MR-4]
          Length = 226

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 81/228 (35%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     L + +GY F N  LL +ALTH S ++   +  ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNLPRLCRTLGYEFKNIELLTQALTHRSAAN---KHNERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +T + +A+   L  ++ +     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVRGDTLTLIAKAFKLGDYLFLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  +EV    +  ++ +R  +      ++DAKT LQE+        P+Y+V
Sbjct: 118 EAIIGAIYLDSDLEVCRKLLLHWYAERLAEIQPGVNQKDAKTLLQEYLQGLKKPLPDYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
               G  HD  FTV   I  L+ +  G+  S+R AEQ+AAA+VL+   
Sbjct: 178 INIEGDAHDQTFTVECRIDDLSESVIGVASSRRKAEQIAAAQVLELLK 225


>gi|117921465|ref|YP_870657.1| ribonuclease III [Shewanella sp. ANA-3]
 gi|189043353|sp|A0KZN2|RNC_SHESA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|117613797|gb|ABK49251.1| RNAse III [Shewanella sp. ANA-3]
          Length = 226

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 81/228 (35%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     L + +GY F N  LL +ALTH S ++   +  ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNLPRLCRTLGYEFKNIDLLTQALTHRSAAN---KHNERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +T + +A+   L  ++ +     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVRGDTLTLIAKAFKLGDYLFLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  +EV    +  ++ +R  +      ++DAKT LQE+        P+Y+V
Sbjct: 118 EAIIGAIYLDSDLEVCRKLLLHWYAERLAEIQPGVNQKDAKTLLQEYLQGLKKPLPDYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
               G  HD  FTV   I  L+ +  G+  S+R AEQ+AAA+VL+   
Sbjct: 178 INIEGDAHDQTFTVECRIDDLSESVIGVASSRRKAEQIAAAQVLELLK 225


>gi|253578969|ref|ZP_04856240.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849912|gb|EES77871.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 227

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 75/213 (35%), Positives = 105/213 (49%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  +   LE+ IGY F N+  L +ALTHSS ++  +     S ERLEFLGD +L L+ S
Sbjct: 1   MNR-KTEELEEIIGYHFKNKHYLTQALTHSSYANEKKLGKLGSNERLEFLGDAVLELISS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  F    EGEL+ +  SLV   + +  ARE  L  F+ +             SI +
Sbjct: 60  DYLYARFTQIPEGELTKKRASLVCEPSLAYCAREFGLPQFLLLGKGEDMTGGRNRDSIVS 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E+L+ A+YLDGG   A  FV  +         +   D+KT LQE          EY 
Sbjct: 120 DATEALLGAIYLDGGFANAKEFVLNFILNDIEHK-QLFYDSKTILQEIVQENGTQPVEYI 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +T   GPDH+  FTV   ++G    QG   +K+
Sbjct: 179 LTKEEGPDHNKNFTVEARVNGKVMGQGSGHTKK 211


>gi|160915457|ref|ZP_02077668.1| hypothetical protein EUBDOL_01465 [Eubacterium dolichum DSM 3991]
 gi|158432577|gb|EDP10866.1| hypothetical protein EUBDOL_01465 [Eubacterium dolichum DSM 3991]
          Length = 227

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLIST 57
           M  + +  L++R G    N+  + +ALTHSS  + ++ S    ERLEF+GD +L L  + 
Sbjct: 1   MDTI-FEWLKQR-GIQIENKERMVEALTHSSYVNEHKASKHDNERLEFMGDAVLQLWSTR 58

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF+   +  EG+++     LV  E  +   R L    ++ +     K       S+ AD
Sbjct: 59  KLFHLTPALSEGQMTTLRAQLVCEEALAAYNRTLGWGKYLLLGVGEEKTGGRNRDSLLAD 118

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + E+++ A+YLD G+E     ++            +   D KT+LQE+  A       Y+
Sbjct: 119 MFEAVLGAIYLDQGMEAVDIILESVLTPAITQPKSESVIDYKTKLQEYIQADTRKNVHYE 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   SGP + P F V+V++  +   +G+  SK+ AEQ+AA +  ++ 
Sbjct: 179 LVSTSGPSNAPIFEVIVKLEDIIMGKGVGNSKKRAEQMAAKDAFEKM 225


>gi|145630695|ref|ZP_01786474.1| ribonuclease III [Haemophilus influenzae R3021]
 gi|145641851|ref|ZP_01797426.1| ribonuclease III [Haemophilus influenzae R3021]
 gi|144983821|gb|EDJ91271.1| ribonuclease III [Haemophilus influenzae R3021]
 gi|145273473|gb|EDK13344.1| ribonuclease III [Haemophilus influenzae 22.4-21]
          Length = 227

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 82/231 (35%), Positives = 121/231 (52%), Gaps = 11/231 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L    LE++IGY F + +LL++ALTH S +    +  ERLEFLGD IL   I+  L+
Sbjct: 1   MNHLD--RLERKIGYRFNDIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE
Sbjct: 56  HQFPRCNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD G+ V    +  +++Q    +K G  ++DAKT LQE+   K    P Y+V 
Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVV 175

Query: 179 FRSGPDHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H   FTV  ++               S+R AEQ AA ++LK   I
Sbjct: 176 NIQGEAHCQIFTVECKVKSAEKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226


>gi|111115536|ref|YP_710154.1| ribonuclease III [Borrelia afzelii PKo]
 gi|123341290|sp|Q0SMF0|RNC_BORAP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|110890810|gb|ABH01978.1| ribonuclease III [Borrelia afzelii PKo]
          Length = 245

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59
             + S   + +   F N  LL  AL+HSS S+      ++ ERLEFLGD +L L+I+  L
Sbjct: 15  KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKSDNNERLEFLGDSVLNLIITDHL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EGELS   + +VS ++ S +ARE+DL S+I +      +       I AD +
Sbjct: 75  YKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134

Query: 120 ESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + A+YLD G  +A  FV        R + +    +D K+ LQE+   K+ ++P YK+
Sbjct: 135 EAFVGAIYLDSGFLIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPNYKL 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDHD  F V + +     + G   SK+ AE  AA   LK  
Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240


>gi|224542836|ref|ZP_03683375.1| hypothetical protein CATMIT_02028 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524248|gb|EEF93353.1| hypothetical protein CATMIT_02028 [Catenibacterium mitsuokai DSM
           15897]
          Length = 230

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 5/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60
           ++     ++    F    L ++A THSS ++        YERLEF+GD +L L +S  +F
Sbjct: 1   MKILDFLQKENIPFKRIGLYKEAFTHSSYANESNAHIPDYERLEFMGDAVLQLFVSEFIF 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                 KEG+L+   + LV  E+ ++ + EL L   + +     K       S+ A++ E
Sbjct: 61  ALHPEYKEGQLTQLRSKLVREESLARFSEELHLGELLYLGVGEEKSGGRHRESVLANIYE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           S I ALYLD G E     ++K   +            D KT+LQE   +    T  Y V 
Sbjct: 121 SFIGALYLDCGKEQVIRILEKTIFKHVNEVNEFDDITDYKTKLQELVQSDDRKTVSYHVK 180

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +GP + P F + V +  +    G   SK+ AEQ AA + L + 
Sbjct: 181 SSTGPANAPEFVIEVILDDMILGTGKGTSKKRAEQHAAKDALMKM 225


>gi|125624543|ref|YP_001033026.1| ribonuclease III [Lactococcus lactis subsp. cremoris MG1363]
 gi|189043323|sp|A2RLZ8|RNC_LACLM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|124493351|emb|CAL98325.1| ribonuclease III [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071337|gb|ADJ60737.1| ribonuclease III [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 231

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 103/223 (46%), Gaps = 9/223 (4%)

Query: 8   TLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
            L+K++    G  F +  LL+ A THSS ++  +     + ERLEFLGD  L L+IS  L
Sbjct: 3   KLQKKLKNDYGLVFNDEYLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYL 62

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  +    EGELS   +S+V  E+ +  +R      F+R+     K       +   ++ 
Sbjct: 63  YRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLF 122

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+ + AL++D G++    F+                 D KTELQE        T  YK+ 
Sbjct: 123 EAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVIDYKTELQEVLQIGGETTISYKIL 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GP HD  F   V  +G    +G+  SK+ AEQ AA   +K
Sbjct: 183 KEEGPAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225


>gi|313892546|ref|ZP_07826133.1| ribonuclease III [Dialister microaerophilus UPII 345-E]
 gi|313118943|gb|EFR42148.1| ribonuclease III [Dialister microaerophilus UPII 345-E]
          Length = 239

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 111/232 (47%), Gaps = 9/232 (3%)

Query: 1   MSALRYSTLEKRIG---YAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGL 53
           M   R   LE+ I        N  LL  ALTH+S ++ ++++     ERLEFLGD +L L
Sbjct: 1   MHKNRIKELEEFIKENEIPIKNHELLNIALTHTSYANEHKKNKEHDNERLEFLGDAVLDL 60

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           ++   LF  +    EGEL+    S V    C++++  L++  ++ +     K       S
Sbjct: 61  IVGEYLFRKYPLWSEGELTKAKASAVCKPACAEISTRLNVGKYLLLGKGEEKSGGRTRVS 120

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGV 171
           I  D  ESLI A+YLD G EV   FV K+ ++       G + +D KT+LQE       V
Sbjct: 121 ILGDAFESLIGAIYLDIGYEVTFDFVIKHLEKFLDLIMQGDYDKDYKTDLQEILQQNGDV 180

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              Y V    GPDHD    + V   G     G+  SK+ A Q AA E ++R 
Sbjct: 181 EICYNVIHDEGPDHDKTIWMSVTADGKYLGSGIGKSKKQAAQRAAKEAIERI 232


>gi|303233301|ref|ZP_07319972.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
 gi|302480601|gb|EFL43690.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
          Length = 229

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 112/222 (50%), Gaps = 3/222 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
           R   +++ + Y F++ +L + ALTH S         SYERLEFLGD ILG +I+  +F  
Sbjct: 6   RVCRVQEILDYTFSDITLAKAALTHPSAVEGQPVSASYERLEFLGDSILGAIIACDMFEQ 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+    SLVS +T SQVA EL +A  I      R      M S   +V E+L
Sbjct: 66  FPDMDEGALTRMKTSLVSGQTLSQVADELGIAPLIVFGESERGTGTRGMHSALENVYEAL 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A+YLDGG +    F+ +   +  +          K+ELQE++   +   P Y++   S
Sbjct: 126 VGAMYLDGGYDPTAAFIRRTLAEYMVPQRAAHPISPKSELQEFSQRIYHEMPVYELEEES 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GP H P FT  V ++G    +G   SK+ ++  AA   L + 
Sbjct: 186 GPAHLPHFTTAVYVNGELVGRGSGTSKKESQTQAAQAALDKL 227


>gi|224532223|ref|ZP_03672855.1| ribonuclease III [Borrelia valaisiana VS116]
 gi|224511688|gb|EEF82094.1| ribonuclease III [Borrelia valaisiana VS116]
          Length = 245

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 116/226 (51%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59
             + S   + +   F N  LL  AL+HSS S+   +   + ERLEFLGD +L L+I+  L
Sbjct: 15  KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKSGNNERLEFLGDSVLNLIITDHL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EGELS   + +VS ++ S +ARE+DL S+I +      +       I AD +
Sbjct: 75  YKTYPNKSEGELSKARSYIVSEDSLSNIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134

Query: 120 ESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + A+YLD G  VA  FV        R + +    +D K+ LQE+   K+ ++P YK+
Sbjct: 135 EAFVGAIYLDSGFSVATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYIQKKYKISPSYKL 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDHD  F V + +     + G   SK+ AE  AA   LK  
Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240


>gi|224534577|ref|ZP_03675153.1| ribonuclease III [Borrelia spielmanii A14S]
 gi|224514254|gb|EEF84572.1| ribonuclease III [Borrelia spielmanii A14S]
          Length = 245

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59
             + S   + +   F N  LL  AL+HSS S+   +   + ERLEFLGD +L L+I+  L
Sbjct: 15  KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKSGNNERLEFLGDSVLNLIITDHL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EGELS   + +VS ++ S +ARE+DL S+I +      +       I AD +
Sbjct: 75  YKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134

Query: 120 ESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + A+YLD G  +A  FV        R + +    +D K+ LQE+   K+ ++P YK+
Sbjct: 135 EAFVGAIYLDSGFSIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDHD  F V + +     + G   SK+ AE  AA   LK  
Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240


>gi|28378329|ref|NP_785221.1| ribonuclease III [Lactobacillus plantarum WCFS1]
 gi|254556537|ref|YP_003062954.1| ribonuclease III [Lactobacillus plantarum JDM1]
 gi|300767266|ref|ZP_07077178.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308180480|ref|YP_003924608.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|38258332|sp|Q88WK0|RNC_LACPL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28271164|emb|CAD64069.1| ribonuclease III [Lactobacillus plantarum WCFS1]
 gi|254045464|gb|ACT62257.1| ribonuclease III [Lactobacillus plantarum JDM1]
 gi|300495085|gb|EFK30241.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308045971|gb|ADN98514.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 231

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64
           L++R G  F +  LL +A T +S  + +Q+     YER+EFLGD +L L++S  L+  + 
Sbjct: 9   LKERFGIVFNDPDLLAEAFTQASYVNEHQDQQLKYYERVEFLGDAVLELVVSEYLYKRYK 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G+L+    ++V  E+ +  ARE D   +IR+    +K       S+  D+ ES + 
Sbjct: 69  DMPQGKLTRLRAAMVCEESFASFARECDFPQYIRLGKGEQKAHAWERDSLLCDIFESFVG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ALYLD G E    FV +    +          D KT LQE+      V  +Y++  + GP
Sbjct: 129 ALYLDQGREPVLKFVHQVIFPKLDEGRFDGVFDYKTTLQEYLQRDGDVAIDYQLIEQDGP 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            ++  + + V   G    +G   SK+ AEQ AA +   + 
Sbjct: 189 ANERSYEIAVLADGQKIGEGWGHSKKEAEQSAARQAYSQL 228


>gi|229918600|ref|YP_002887246.1| ribonuclease III [Exiguobacterium sp. AT1b]
 gi|229470029|gb|ACQ71801.1| ribonuclease III [Exiguobacterium sp. AT1b]
          Length = 259

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 4/219 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62
           + +LE+R+   F+N  LL +A THSS  +  +   +  ERLEFLGD +L L +S  L+  
Sbjct: 31  FKSLEERLDVQFSNHDLLMQAFTHSSYVNEQRGLRKDNERLEFLGDAVLELTVSRFLYET 90

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EGEL+    ++V   +    A     + FI +             ++ ADV ES 
Sbjct: 91  YPERSEGELTKLRAAIVCEPSLVNFAEAFAFSDFILLGKGEELTGGRKRPALLADVFESY 150

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           I ALYLD GIE    F+ +    +      + + D K++LQE    +      Y++    
Sbjct: 151 IGALYLDQGIEAVERFLAEAVFPKVLAGVFEEQTDFKSQLQESVQREGLGPVSYEIIEER 210

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           GP H   F     +S     +G+  SK+ AEQ+AA E L
Sbjct: 211 GPAHSREFVAHARLSDDIVGEGVGRSKKEAEQLAAKEAL 249


>gi|90101637|sp|Q3IDL2|RNC_PSEHT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 225

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M     + L K I Y FA++ LLE+A+TH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MKK-NVTELYKTIDYIFADQGLLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANALY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A+EG+LS   ++LV  +T ++   E  L  ++R+     K       S  AD VE
Sbjct: 57  AKFPKAREGDLSRMRSTLVRGQTLAEFGLEFGLGDYLRLGPGELKSGGFRRESTLADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++LD  IE  G  +  ++++R         ++D KT LQE   A+    P Y V 
Sbjct: 117 AIIGAVFLDSDIERCGELILSWYEERLNAISPGLNQKDPKTLLQEHLQARKLSLPGYTVV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              G  H+  FTV   + G+     +  S+R AEQ AA + LK   
Sbjct: 177 DTKGQAHNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALKILK 222


>gi|161761286|ref|YP_033345.2| ribonuclease III [Bartonella henselae str. Houston-1]
          Length = 246

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 117/226 (51%), Positives = 155/226 (68%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LEK  G+ F ++  L+KALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 12  MKLPMIDQLEKLTGHYFKDKKKLKKALTHSSVQGSEQGNYERLEFLGDRVLGLLIAEMLY 71

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR NSLV+A+TC+ +A E++L   I V  +++      +T++ ADV+E
Sbjct: 72  QLFPQASEGELSVRLNSLVNAQTCADIALEMELPVMIHVGFEMKNLKGRRLTNMYADVIE 131

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG+E    F+ +YW+ RA +    RRDAKT+LQEWAH + GV P Y+V  R
Sbjct: 132 ALIAVIYLDGGLESVRPFIQRYWQSRAKQMDAGRRDAKTQLQEWAHVQGGVQPHYRVVKR 191

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDP F V V I G A   G   SKR AE++AA ++L+REGIW
Sbjct: 192 SGPDHDPVFMVEVSIPGFASEIGQGNSKRCAERMAAEKILRREGIW 237


>gi|261211555|ref|ZP_05925843.1| ribonuclease III [Vibrio sp. RC341]
 gi|260839510|gb|EEX66136.1| ribonuclease III [Vibrio sp. RC341]
          Length = 221

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S      +  ERLEFLGD IL  +I+  L+  F   
Sbjct: 2   NKLTSKLGYTFKETELLNLALTHRSA---NGKHNERLEFLGDSILSFVIADELYRRFPKV 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 59  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118

Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A        + +   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 119 YLDSELETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 218


>gi|322514172|ref|ZP_08067237.1| ribonuclease III [Actinobacillus ureae ATCC 25976]
 gi|322119958|gb|EFX91960.1| ribonuclease III [Actinobacillus ureae ATCC 25976]
          Length = 222

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 6/224 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L+K++ Y F +   L +ALTH S      ++ ERLEFLGD IL   I   LF  F
Sbjct: 1   MHIERLQKKLDYKFISLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+ DL  ++++ +   K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRATLVREQTLAILARQFDLGEYMKLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A   V  +++     +K    ++D KT LQE+   +    P Y+V    
Sbjct: 118 AAIYLDSGMDNAIERVSVWYQDLLAEMKPSDAQKDPKTRLQEFLQGRKLKLPAYEVIDIK 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224
           G  H+  F V  +I        G+  S+R AEQ AA +VL +  
Sbjct: 178 GEAHNQTFKVTCKIETFDETFIGVGTSRRKAEQNAAEQVLVKLN 221


>gi|15895025|ref|NP_348374.1| ribonuclease III [Clostridium acetobutylicum ATCC 824]
 gi|22654069|sp|Q97IA4|RNC_CLOAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|15024717|gb|AAK79714.1|AE007684_2 DsRNA-specific ribonuclease III [Clostridium acetobutylicum ATCC
           824]
          Length = 230

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 72/216 (33%), Positives = 105/216 (48%), Gaps = 4/216 (1%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           ++G  F N +LL  ALTHSS ++  +  E  ERLEFLGD +L L IS   F  + +  EG
Sbjct: 13  KLGIEFQNINLLVTALTHSSYANENKNAEYNERLEFLGDAVLQLSISEYFFKKYPTISEG 72

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           EL+ +   +V   +   +     L  +IR+S            SI AD VE++IAA+YLD
Sbjct: 73  ELTKKRALVVCGMSLHSIGERWQLGKYIRMSHGEELTGGRTRVSIIADCVEAVIAAIYLD 132

Query: 130 GGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            G + A  F+ + ++         K   D KT LQE   +K     +Y +    GP H  
Sbjct: 133 KGFDTAKNFILREFEGTIQNAVENKIILDYKTRLQEILQSKGKTDIKYTLVRHEGPPHRR 192

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F V +       + G   +K+ AEQ AA + LK  
Sbjct: 193 KFFVNLNFDNDVKSTGEGYTKKDAEQDAACKALKGL 228


>gi|331701485|ref|YP_004398444.1| ribonuclease 3 [Lactobacillus buchneri NRRL B-30929]
 gi|329128828|gb|AEB73381.1| Ribonuclease 3 [Lactobacillus buchneri NRRL B-30929]
          Length = 236

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 5/219 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L++  G    ++ LL++A T +S  + ++    + YERLEFLGD +L L++S  +F  + 
Sbjct: 9   LKQDFGIHIDDQDLLDEAFTQASYVNEHRGEGLKFYERLEFLGDAVLQLIVSDYIFKRYP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G L+    ++V+ ++ S  ARE     +IR+     K       S+  D+ ES + 
Sbjct: 69  KMPQGRLTRLRAAMVNEQSFSTFARECHFNQYIRLGKGEEKAGARDRDSLLCDIFESFVG 128

Query: 125 ALY-LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            LY   G  EV        + +          D KTELQE A A   V  +Y++    GP
Sbjct: 129 CLYLDQGQAEVTRFVTKVIFPKLDEGMFAEFFDHKTELQELAQADGPVAIDYELVDEYGP 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           D+D  F V V I G     G+  SK+ AEQ AA + L++
Sbjct: 189 DNDRSFKVNVSIDGKLYGVGIGHSKKGAEQKAAQQALEQ 227


>gi|257784655|ref|YP_003179872.1| ribonuclease III [Atopobium parvulum DSM 20469]
 gi|257473162|gb|ACV51281.1| ribonuclease III [Atopobium parvulum DSM 20469]
          Length = 243

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 88/224 (39%), Positives = 115/224 (51%), Gaps = 3/224 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
           R +  E   G+ F N+ L+E ALTH S         SYERLEFLGD ILG +I+T LF  
Sbjct: 6   RVAAAEAICGHTFINKDLIEAALTHPSAVEGKPVSASYERLEFLGDSILGAIIATELFER 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+L+    SLVS  T S V+  L ++  I +    +      M S   +V ES+
Sbjct: 66  YPDMDEGQLTRLKISLVSGHTLSIVSDTLGVSPLIVMGISEKGTGKRGMKSALENVYESI 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRS 181
           + ALYLD G E    FV +        +   R    K+ LQE   A+   TPEYK+   S
Sbjct: 126 VGALYLDAGFEPTRDFVIRTLGPHISPTLAVRSVSPKSRLQEAVQAQGKATPEYKLIGES 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           GP H P FT VV + GL   +G   SK+AAE  AA + L R G+
Sbjct: 186 GPAHTPTFTAVVFVDGLKVGRGQGPSKKAAESEAAQDALVRLGV 229


>gi|302338403|ref|YP_003803609.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293]
 gi|301635588|gb|ADK81015.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293]
          Length = 244

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNH 62
               EK +G  F     L  A +H S ++      ++ E+LEFLGD +LGL++S  LF  
Sbjct: 17  LQLFEKHVGIRFRKLEFLNLAFSHRSFANEQGTNVDNNEKLEFLGDSVLGLVVSEYLFAL 76

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                EG+L+   + +VS ++ +++AR++ + ++I +             +I AD +E++
Sbjct: 77  LPDKAEGDLARVKSFVVSEDSLAEIARKIKVDNYILIGKGEEYSGGRNKKAILADCMEAI 136

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I + YLD G + A +FV KY      K    + ++D KT LQE+   +F   P Y +  +
Sbjct: 137 IGSFYLDSGFKAARSFVLKYLIPEINKVLENRHKKDYKTLLQEYVQKQFKSYPRYSLVKK 196

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +GPDHD  F + V+I G     G   +K+ AEQ AA    ++ 
Sbjct: 197 TGPDHDRTFWIEVKIDGKVYGPGKGKNKKEAEQHAAGLAYRKL 239


>gi|114048421|ref|YP_738971.1| ribonuclease III [Shewanella sp. MR-7]
 gi|122944480|sp|Q0HSJ1|RNC_SHESR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|113889863|gb|ABI43914.1| RNAse III [Shewanella sp. MR-7]
          Length = 226

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 81/228 (35%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     L + +GY F N  LL +ALTH S ++   +  ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNLPRLCRTLGYEFKNLELLTQALTHRSAAN---KHNERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +T + +A+   L  ++ +     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVRGDTLTLIAKAFKLGDYLFLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  +EV    +  ++ +R  +      ++DAKT LQE+        P+Y+V
Sbjct: 118 EAIIGAIYLDSDLEVCRKLLLHWYAERLAEIQPGVNQKDAKTLLQEYLQGLKKPLPDYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
               G  HD  FTV   I  L+ +  G+  S+R AEQ+AAA+VL+   
Sbjct: 178 INIEGDAHDQTFTVECRIDDLSESVIGVASSRRKAEQIAAAQVLELLK 225


>gi|301168615|emb|CBW28205.1| RNase III [Haemophilus influenzae 10810]
          Length = 227

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 83/231 (35%), Positives = 122/231 (52%), Gaps = 11/231 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L    LE++IGY F + +LL++ALTH S +    +  ERLEFLGD IL   I+  L+
Sbjct: 1   MNHLD--RLERKIGYCFNDITLLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE
Sbjct: 56  HQFPRCNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD G+ V    +  +++Q    +K G  ++DAKT LQE+   K    P Y+V 
Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVV 175

Query: 179 FRSGPDHDPRFTVVVEIS--GLA--PAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H   FTV  ++   G           S+R AEQ AA ++LK   I
Sbjct: 176 NIQGEAHCQIFTVECKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226


>gi|68248565|ref|YP_247677.1| ribonuclease III [Haemophilus influenzae 86-028NP]
 gi|145629132|ref|ZP_01784931.1| ribonuclease III [Haemophilus influenzae 22.1-21]
 gi|145633429|ref|ZP_01789159.1| ribonuclease III [Haemophilus influenzae 3655]
 gi|145636782|ref|ZP_01792448.1| ribonuclease III [Haemophilus influenzae PittHH]
 gi|145639697|ref|ZP_01795300.1| ribonuclease III [Haemophilus influenzae PittII]
 gi|148825705|ref|YP_001290458.1| ribonuclease III [Haemophilus influenzae PittEE]
 gi|229846933|ref|ZP_04467039.1| ribonuclease III [Haemophilus influenzae 7P49H1]
 gi|260582072|ref|ZP_05849867.1| ribonuclease III [Haemophilus influenzae NT127]
 gi|81337008|sp|Q4QPN0|RNC_HAEI8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043319|sp|A5UBC4|RNC_HAEIE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|68056764|gb|AAX87017.1| ribonuclease III [Haemophilus influenzae 86-028NP]
 gi|144978635|gb|EDJ88358.1| ribonuclease III [Haemophilus influenzae 22.1-21]
 gi|144985992|gb|EDJ92594.1| ribonuclease III [Haemophilus influenzae 3655]
 gi|145270080|gb|EDK10017.1| ribonuclease III [Haemophilus influenzae PittHH]
 gi|145271254|gb|EDK11168.1| ribonuclease III [Haemophilus influenzae PittII]
 gi|148715865|gb|ABQ98075.1| ribonuclease III [Haemophilus influenzae PittEE]
 gi|229810017|gb|EEP45737.1| ribonuclease III [Haemophilus influenzae 7P49H1]
 gi|260094962|gb|EEW78855.1| ribonuclease III [Haemophilus influenzae NT127]
 gi|309750667|gb|ADO80651.1| RNase III, dsRNA [Haemophilus influenzae R2866]
          Length = 227

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 83/231 (35%), Positives = 122/231 (52%), Gaps = 11/231 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L    LE++IGY F + +LL++ALTH S +    +  ERLEFLGD IL   I+  L+
Sbjct: 1   MNHLD--RLERKIGYCFNDIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE
Sbjct: 56  HQFPRCNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD G+ V    +  +++Q    +K G  ++DAKT LQE+   K    P Y+V 
Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVV 175

Query: 179 FRSGPDHDPRFTVVVEIS--GLA--PAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H   FTV  ++   G           S+R AEQ AA ++LK   I
Sbjct: 176 NIQGEAHCQIFTVECKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226


>gi|325509162|gb|ADZ20798.1| ribonuclease III [Clostridium acetobutylicum EA 2018]
          Length = 230

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 72/216 (33%), Positives = 105/216 (48%), Gaps = 4/216 (1%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           ++G  F N +LL  ALTHSS ++  +  E  ERLEFLGD +L L IS   F  + +  EG
Sbjct: 13  KLGIEFQNINLLVTALTHSSYANENKNAEYNERLEFLGDAVLQLSISEYFFKKYPTISEG 72

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           EL+ +   +V   +   +     L  +IR+S            SI AD VE++IAA+YLD
Sbjct: 73  ELTKKRALVVCGISLHSIGERWQLGKYIRMSHGEELTGGRTRVSIIADCVEAVIAAIYLD 132

Query: 130 GGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            G + A  F+ + ++         K   D KT LQE   +K     +Y +    GP H  
Sbjct: 133 KGFDTAKNFILREFEGTIQNAVENKIILDYKTRLQEILQSKGKTDIKYTLVRHEGPPHRR 192

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F V +       + G   +K+ AEQ AA + LK  
Sbjct: 193 KFFVNLNFDNDVKSTGEGYTKKDAEQDAACKALKGL 228


>gi|167037696|ref|YP_001665274.1| ribonuclease III [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|307264836|ref|ZP_07546398.1| ribonuclease III [Thermoanaerobacter wiegelii Rt8.B1]
 gi|320116111|ref|YP_004186270.1| ribonuclease III [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|326389510|ref|ZP_08211077.1| ribonuclease III [Thermoanaerobacter ethanolicus JW 200]
 gi|166856530|gb|ABY94938.1| Ribonuclease III [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|306920094|gb|EFN50306.1| ribonuclease III [Thermoanaerobacter wiegelii Rt8.B1]
 gi|319929202|gb|ADV79887.1| ribonuclease III [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|325994515|gb|EGD52940.1| ribonuclease III [Thermoanaerobacter ethanolicus JW 200]
          Length = 246

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 75/214 (35%), Positives = 115/214 (53%), Gaps = 5/214 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTL 58
                S LEKRI Y+F +++LL +ALTHSS +H  + S    ERLEFLGD +L L+IS  
Sbjct: 16  KRENLSELEKRINYSFKDKNLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEY 75

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+ +    +EG LS     +V   + ++ ARE++L +F+R+             SI AD 
Sbjct: 76  LYKNRKDLEEGSLSKYRAEIVCEPSLARCAREIELGNFLRIGKGEELTGGRERDSILADA 135

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYK 176
           +E+++AA+YLDGG+EV    + + +K    +  +    RD KT+LQE   +       Y+
Sbjct: 136 MEAILAAVYLDGGLEVVRNVILELFKNIIEEVLEGLIYRDYKTKLQEVVQSMEIGKIIYE 195

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
           +    GPDH+  F   V I  +   +G   SK+ 
Sbjct: 196 LIEEMGPDHNKTFVTQVRIGDVILGKGYGKSKKE 229


>gi|15603994|ref|NP_220509.1| ribonuclease III [Rickettsia prowazekii str. Madrid E]
 gi|6226018|sp|Q9ZE31|RNC_RICPR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|3860685|emb|CAA14586.1| RIBONUCLEASE III (rnc) [Rickettsia prowazekii]
          Length = 225

 Score =  141 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 116/228 (50%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSS----ISHSYQESYERLEFLGDRILGLLIS 56
           M +  +  LE  +GY+F N+ LL +AL+H S      + Y + YERLEFLGD +L LLI+
Sbjct: 1   MES--FEKLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLIT 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +LF +F++ KEG L+   + LV  ET   V  +L L  +I ++            +   
Sbjct: 59  EILFKNFENYKEGNLAKIRSYLVCKETICIVGTKLALKDYIIMTHGEEVAGGRDNPNNIE 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +  E+LIAA+YLD  IE+    ++K W +          D KT LQEWA A     P Y+
Sbjct: 119 NATEALIAAIYLDSNIEITHNIIEKLWAEFMKVQNLTDYDPKTALQEWAQANSHHLPIYR 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  R G  H   FTV+V++           S + AE+ AA  +L R  
Sbjct: 179 LIKREGAAHSSIFTVLVKVKDYEQTC-TGYSIKEAEKKAARSLLHRLK 225


>gi|85712960|ref|ZP_01043999.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina baltica OS145]
 gi|85693198|gb|EAQ31157.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina baltica OS145]
          Length = 228

 Score =  141 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 118/221 (53%), Gaps = 6/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + LE+ IGY F  +SLL++ALTH S    +    ERLEFLGD ILG++I+  LF+ F  
Sbjct: 8   LTQLEQIIGYRFERQSLLKQALTHRSA---HANHNERLEFLGDSILGVVIAEALFSRFPK 64

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    ++V   + +++ ++  L  ++ +     K       SI AD +E++I A
Sbjct: 65  VAEGDLSRMRAAIVCGRSLARLGKKKGLGDYLSLGQGELKSGGYRRESILADAMEAIIGA 124

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ++LD  ++     V  +++++         ++D KT LQEW  A+    PEY V    G 
Sbjct: 125 IFLDSDMDTVKQVVLGWFEEQLETIKPGASQKDPKTRLQEWLQARQRPLPEYDVVATQGQ 184

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
            H+ +FTV   I GL  P  G   S+R AEQ AA   L++ 
Sbjct: 185 AHNQQFTVTCTIEGLPEPLLGTGTSRRKAEQAAATSALEQL 225


>gi|289578474|ref|YP_003477101.1| ribonuclease III [Thermoanaerobacter italicus Ab9]
 gi|297544750|ref|YP_003677052.1| ribonuclease III [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|289528187|gb|ADD02539.1| ribonuclease III [Thermoanaerobacter italicus Ab9]
 gi|296842525|gb|ADH61041.1| ribonuclease III [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 246

 Score =  141 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 74/214 (34%), Positives = 112/214 (52%), Gaps = 5/214 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTL 58
                S LEK+I Y+F N+ LL +ALTHSS +H  + S    ERLEFLGD +L L+IS  
Sbjct: 16  KRKNLSELEKKINYSFKNKDLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEY 75

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+ +    +EG LS     +V   + ++ ARE+ L +F+ +             S+ AD 
Sbjct: 76  LYKNRKDLEEGSLSKYRAEIVCEPSLARCAREIGLGNFLLIGKGEEMTGGRERDSLLADA 135

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYK 176
           +E+L+AA+YLDGG+EV    +   ++    +  +    RD KT+LQE   +       Y+
Sbjct: 136 MEALLAAVYLDGGLEVVRNIILDLFRNIIEEVLEGLIYRDYKTKLQEVVQSMGIGKITYE 195

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
           +    GPDH+  F   V I  +A  +G   SK+ 
Sbjct: 196 LVKEIGPDHNKTFITKVRIGDVALGEGYGKSKKE 229


>gi|157964181|ref|YP_001499005.1| ribonuclease III [Rickettsia massiliae MTU5]
 gi|189043342|sp|A8F0M2|RNC_RICM5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157843957|gb|ABV84458.1| Ribonuclease III [Rickettsia massiliae MTU5]
          Length = 227

 Score =  141 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 117/228 (51%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M +  + TLEK + Y+F N+ LL +AL+H S+   ++    + YERLEFLGD +L L+I+
Sbjct: 1   MES--FETLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVIT 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +LF +F +  EG L+   + LV  ET   V  +L L ++I ++            +   
Sbjct: 59  EILFRNFANYNEGHLAKIRSYLVCKETICMVGAKLTLKNYIIMTHGEEVAGGRDNLNNIE 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +  E+LIAA+YLD  IE     ++K W +          D KT LQEWA A     P Y+
Sbjct: 119 NATEALIAAIYLDSNIETTYDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYR 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  R G  H   FTV+V++       G   + + AE+ AA  +L R  
Sbjct: 179 LIKREGASHSSTFTVLVKVKDYEQ-TGTGHAIKEAEKNAARSLLHRLK 225


>gi|298528053|ref|ZP_07015457.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511705|gb|EFI35607.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
          Length = 232

 Score =  141 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64
              L+ +IGY + +  LL +ALTHSS ++  + E  ERLEFLGD +L L IS +LF  F 
Sbjct: 2   LDELQDKIGYRYQDPELLVRALTHSSYANERHMEHNERLEFLGDAVLELCISNVLFFRFP 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG L+    +LVS  T +++AR L L  +I +             S+ AD +E+++ 
Sbjct: 62  RAPEGHLTRLRAALVSEPTLARLARSLTLGDYIFLGRGEELQGGRDRDSVLADTLEAILG 121

Query: 125 ALYLDGGIEVAGTFV---DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD G + A   +    + +    +++    +D K+ LQE     F   P Y +    
Sbjct: 122 AVYLDSGYDGAFECIAALFEDFIPDRVEALPVSKDFKSRLQEKTQGLFRARPVYTLIDSY 181

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GP+H+  + V VE+      + M  S + AEQ AA++ L+  
Sbjct: 182 GPEHEKIYRVQVELPDGTGIEAMAGSVKKAEQKAASKALEYL 223


>gi|148265180|ref|YP_001231886.1| ribonuclease III [Geobacter uraniireducens Rf4]
 gi|146398680|gb|ABQ27313.1| RNAse III [Geobacter uraniireducens Rf4]
          Length = 240

 Score =  141 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
            + LE  I Y FA+RSLL +ALTH S  +       +  +RLEF GD ++  L+S +L  
Sbjct: 9   LAGLESAINYHFADRSLLTEALTHRSFVNESGGKWTKDNQRLEFFGDAVIDFLLSRMLLE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  ++EG L+    SLV   + + +A E+ L +F+++     +       S+ AD  E+
Sbjct: 69  RFPDSREGALTKIRASLVDEGSLASLAEEIGLGAFLKLGRGEERSGGRRKRSLLADAYEA 128

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+AA+YLDGGIE     V+ ++ +           RD KTE QE AHA  G  P Y +  
Sbjct: 129 LMAAVYLDGGIEPVQRLVEAHFARLMAGREVLSAGRDYKTEFQELAHALRGSMPRYVLRG 188

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            SGPDH+  FTV + I      +G   SK+ AEQ AA E + R 
Sbjct: 189 ISGPDHERSFTVALFIGDERMGEGAGRSKKEAEQAAAREGIARL 232


>gi|238650709|ref|YP_002916562.1| ribonuclease III [Rickettsia peacockii str. Rustic]
 gi|259646552|sp|C4K1R3|RNC_RICPU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238624807|gb|ACR47513.1| ribonuclease III [Rickettsia peacockii str. Rustic]
          Length = 227

 Score =  141 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 116/228 (50%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M +  +  LEK + Y+F N+ LL +AL+H S+   ++    + YERLEFLGD +L L+I+
Sbjct: 1   MES--FEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVIT 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +LF +F +  EG L+   + LV  ET   V  +L L ++I ++            +   
Sbjct: 59  EILFRNFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYIIMTHGEEVAGGRDNLNNIE 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +  E+LIAA+YLD  IE     ++K W +          D KT LQEWA A     P Y+
Sbjct: 119 NATEALIAAIYLDSNIETTHDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYR 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  R G  H   FTV+V++       G   + + AE+ AA  +L R  
Sbjct: 179 LIKREGASHASTFTVLVKVKDYEQ-TGTGHAIKEAEKNAARSLLHRLK 225


>gi|121728984|ref|ZP_01681988.1| ribonuclease III [Vibrio cholerae V52]
 gi|147674970|ref|YP_001217963.1| ribonuclease III [Vibrio cholerae O395]
 gi|153214513|ref|ZP_01949422.1| ribonuclease III [Vibrio cholerae 1587]
 gi|153803086|ref|ZP_01957672.1| ribonuclease III [Vibrio cholerae MZO-3]
 gi|153826905|ref|ZP_01979572.1| ribonuclease III [Vibrio cholerae MZO-2]
 gi|153830879|ref|ZP_01983546.1| ribonuclease III [Vibrio cholerae 623-39]
 gi|229514087|ref|ZP_04403549.1| ribonuclease III [Vibrio cholerae TMA 21]
 gi|229521288|ref|ZP_04410708.1| ribonuclease III [Vibrio cholerae TM 11079-80]
 gi|229524448|ref|ZP_04413853.1| ribonuclease III [Vibrio cholerae bv. albensis VL426]
 gi|229527069|ref|ZP_04416464.1| ribonuclease III [Vibrio cholerae 12129(1)]
 gi|254226246|ref|ZP_04919839.1| ribonuclease III [Vibrio cholerae V51]
 gi|254291661|ref|ZP_04962449.1| ribonuclease III [Vibrio cholerae AM-19226]
 gi|297581085|ref|ZP_06943010.1| ribonuclease III [Vibrio cholerae RC385]
 gi|189043374|sp|A5F5H8|RNC_VIBC3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|121628750|gb|EAX61217.1| ribonuclease III [Vibrio cholerae V52]
 gi|124115315|gb|EAY34135.1| ribonuclease III [Vibrio cholerae 1587]
 gi|124121368|gb|EAY40111.1| ribonuclease III [Vibrio cholerae MZO-3]
 gi|125621219|gb|EAZ49560.1| ribonuclease III [Vibrio cholerae V51]
 gi|146316853|gb|ABQ21392.1| ribonuclease III [Vibrio cholerae O395]
 gi|148873648|gb|EDL71783.1| ribonuclease III [Vibrio cholerae 623-39]
 gi|149739268|gb|EDM53530.1| ribonuclease III [Vibrio cholerae MZO-2]
 gi|150422433|gb|EDN14392.1| ribonuclease III [Vibrio cholerae AM-19226]
 gi|227014353|gb|ACP10563.1| ribonuclease III [Vibrio cholerae O395]
 gi|229335466|gb|EEO00948.1| ribonuclease III [Vibrio cholerae 12129(1)]
 gi|229338029|gb|EEO03046.1| ribonuclease III [Vibrio cholerae bv. albensis VL426]
 gi|229341820|gb|EEO06822.1| ribonuclease III [Vibrio cholerae TM 11079-80]
 gi|229349268|gb|EEO14225.1| ribonuclease III [Vibrio cholerae TMA 21]
 gi|297534911|gb|EFH73747.1| ribonuclease III [Vibrio cholerae RC385]
          Length = 225

 Score =  141 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 111/220 (50%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S      +  ERLEFLGD IL  +I+  L+  F   
Sbjct: 6   NKLTSKLGYTFKETELLNLALTHRSA---NGKHNERLEFLGDSILSFVIADELYRRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A          +   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSDLETARRIVLEWYQCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222


>gi|262167292|ref|ZP_06035002.1| ribonuclease III [Vibrio cholerae RC27]
 gi|262190709|ref|ZP_06048940.1| ribonuclease III [Vibrio cholerae CT 5369-93]
 gi|262024267|gb|EEY42958.1| ribonuclease III [Vibrio cholerae RC27]
 gi|262033421|gb|EEY51928.1| ribonuclease III [Vibrio cholerae CT 5369-93]
 gi|327484953|gb|AEA79360.1| Ribonuclease III [Vibrio cholerae LMA3894-4]
          Length = 221

 Score =  141 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 111/220 (50%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S      +  ERLEFLGD IL  +I+  L+  F   
Sbjct: 2   NKLTSKLGYTFKETELLNLALTHRSA---NGKHNERLEFLGDSILSFVIADELYRRFPKV 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 59  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118

Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A          +   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 119 YLDSDLETARRIVLEWYQCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 218


>gi|300087535|ref|YP_003758057.1| ribonuclease III [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527268|gb|ADJ25736.1| ribonuclease III [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 234

 Score =  141 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 112/223 (50%), Gaps = 6/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
            Y  ++ R+G  FAN ++LE AL HSS  +   +      ERLEFLGD +LG+ I+  LF
Sbjct: 3   DYEEIQARLGVRFANPAILETALIHSSFVNETADQSISHNERLEFLGDAVLGMWIAERLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG L+   + LV  ET + +A EL L   + +     +       +  +  +E
Sbjct: 63  RDFPDEPEGTLTRYRSLLVRRETLAFIADELQLGEALYLGRGEIRSGGRRKPANLSRALE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD G +  G  +D+ +++            D+K+ LQE    ++   PEY++ 
Sbjct: 123 AVIAAVYLDRGYDTTGQVIDRLFERHFADLPGMAAAADSKSHLQEIVQGRYHTPPEYRII 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +GPD+   FT  V ++G     G    K+ AE  AA E L+
Sbjct: 183 EENGPDNAQSFTAEVIVNGQVRGTGRGSRKKDAETAAAQEALE 225


>gi|317058970|ref|ZP_07923455.1| ribonuclease III [Fusobacterium sp. 3_1_5R]
 gi|313684646|gb|EFS21481.1| ribonuclease III [Fusobacterium sp. 3_1_5R]
          Length = 235

 Score =  141 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 9/233 (3%)

Query: 1   MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLL 54
           MS++      LE RI Y F +++LL+ AL H S  + ++     + E+LE LGD +LGL+
Sbjct: 1   MSSVSKNLVDLEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLV 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           ++  L+  +   KEG L+   +  VS    + ++R+L +  ++ +S            SI
Sbjct: 61  VAEYLYQKYPEEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSI 120

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVT 172
             DV E+++ A+YLD G   A  +V  + K        F    D KT LQE+   K+   
Sbjct: 121 LGDVFEAILGAIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDI 180

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           P+Y +    GPDH   F + V+I     A+    +K+ AEQ+AA ++ K  G+
Sbjct: 181 PKYTLVGEEGPDHRKLFEMQVQIQNN-IAKAKGTNKKIAEQMAAKQLCKELGV 232


>gi|262404774|ref|ZP_06081329.1| ribonuclease III [Vibrio sp. RC586]
 gi|262349806|gb|EEY98944.1| ribonuclease III [Vibrio sp. RC586]
          Length = 225

 Score =  141 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S      +  ERLEFLGD IL  +I+  L+  F   
Sbjct: 6   NKLTSKLGYTFKEIELLNLALTHRSA---NGKHNERLEFLGDSILSFVIADELYRRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A +      + +   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222


>gi|222151066|ref|YP_002560220.1| ribonuclease III [Macrococcus caseolyticus JCSC5402]
 gi|222120189|dbj|BAH17524.1| ribonuclease III [Macrococcus caseolyticus JCSC5402]
          Length = 242

 Score =  141 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 5/223 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
            ++ + +   +     +  L  +A +HSS  + ++    +  ERLEFLGD +L L++S  
Sbjct: 12  KVKLNKVLTHLDIIPNDIELYVQAFSHSSFINDFKLDKNKDNERLEFLGDAVLELMVSQY 71

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+       EG L+    ++V   +    A+ L     I +     K       S+ ADV
Sbjct: 72  LYQQHRDLPEGRLTKLRAAIVCEPSLVTFAKMLKFDQLILLGKGEEKTGGRTRPSLIADV 131

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ + ALYLD G +V   F + Y      +       D KT LQE+ H    +   Y++
Sbjct: 132 FEAFVGALYLDQGHDVTKRFFNSYIFPAITEDLLHGLIDYKTCLQEYIHKTKNLQVTYRL 191

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
               GP H   FT  V +       G   +K+ +EQ AA   L
Sbjct: 192 VKEEGPAHFKAFTSEVYVEDKVIGTGTGRTKKESEQQAAQTAL 234


>gi|292571710|gb|ADE29625.1| Ribonuclease III [Rickettsia prowazekii Rp22]
          Length = 225

 Score =  141 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 116/228 (50%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSS----ISHSYQESYERLEFLGDRILGLLIS 56
           M +  +  LE  +GY+F N+ LL +AL+H S      + Y + YERLEFLGD +L LLI+
Sbjct: 1   MES--FEKLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLIT 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +LF +F++ KEG L+   + LV  ET   V  +L L  +I ++            +   
Sbjct: 59  EILFKNFENYKEGNLAKIRSYLVCKETICIVGTKLALKDYIIMTHGEEVAGGRDNPNNIE 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +  E+LIAA+YLD  IE+    ++K W +          D KT LQEWA A     P Y+
Sbjct: 119 NATEALIAAIYLDSNIEITHNIIEKLWAEFMKVQNFTDYDPKTALQEWAQANSHHLPIYR 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  R G  H   FTV+V++           S + AE+ AA  +L R  
Sbjct: 179 LIKREGAAHSSIFTVLVKVKDYEQTC-TGYSIKEAEKKAARSLLHRLK 225


>gi|296185386|ref|ZP_06853796.1| ribonuclease III [Clostridium carboxidivorans P7]
 gi|296050220|gb|EFG89644.1| ribonuclease III [Clostridium carboxidivorans P7]
          Length = 240

 Score =  141 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 113/226 (50%), Gaps = 4/226 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLL 59
               +  LE+++   F ++ LL+ ALTHSS ++     +  ERLEFLGD +L + IS  L
Sbjct: 10  KNDTFVELEQKLDVCFEDKELLKIALTHSSYANGKKNIKFNERLEFLGDSVLQISISEYL 69

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F ++    EGEL+ R   +V   +  ++A++ DL  +IR+S            SI AD V
Sbjct: 70  FLNYSKKTEGELTKRRALIVCENSLYEIAKKWDLGKYIRMSKGEELTGGRERVSILADCV 129

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++IAA+Y+D G E A  FV   +K         K   D KT+LQE       V  +Y +
Sbjct: 130 EAIIAAIYIDAGFEKAKGFVLTNFKDTIEKAIKNKIILDYKTKLQEVMQKNGDVDIQYDL 189

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP H  +F   V ++      G   SK+ +EQ AA + LK  
Sbjct: 190 MKYEGPPHRRKFYTQVSVNNKVLGNGTGYSKKESEQSAAKKALKGL 235


>gi|34580889|ref|ZP_00142369.1| ribonuclease III [Rickettsia sibirica 246]
 gi|157828029|ref|YP_001494271.1| ribonuclease III [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932727|ref|YP_001649516.1| ribonuclease III [Rickettsia rickettsii str. Iowa]
 gi|229586355|ref|YP_002844856.1| ribonuclease III [Rickettsia africae ESF-5]
 gi|166991034|sp|A8GQT8|RNC_RICRS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043343|sp|B0BW84|RNC_RICRO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|259646551|sp|C3PMF3|RNC_RICAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28262274|gb|EAA25778.1| ribonuclease III [Rickettsia sibirica 246]
 gi|157800510|gb|ABV75763.1| ribonuclease III [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907814|gb|ABY72110.1| ribonuclease III [Rickettsia rickettsii str. Iowa]
 gi|228021405|gb|ACP53113.1| Ribonuclease III [Rickettsia africae ESF-5]
          Length = 227

 Score =  141 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 116/228 (50%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M +  +  LEK + Y+F N+ LL +AL+H S+   ++    + YERLEFLGD +L L+I+
Sbjct: 1   MES--FEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVIT 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +LF +F +  EG L+   + LV  ET   V  +L L ++I ++            +   
Sbjct: 59  EILFRNFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYIIMTHGEEVAGGRDNLNNIE 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +  E+LIAA+YLD  IE     ++K W +          D KT LQEWA A     P Y+
Sbjct: 119 NATEALIAAIYLDSNIETTHDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYR 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  R G  H   FTV+V++       G   + + AE+ AA  +L R  
Sbjct: 179 LIKREGASHSSTFTVLVKVKDYEQ-TGTGHAIKEAEKNAARSLLHRLK 225


>gi|16271989|ref|NP_438187.1| ribonuclease III [Haemophilus influenzae Rd KW20]
 gi|260580682|ref|ZP_05848509.1| ribonuclease III [Haemophilus influenzae RdAW]
 gi|1173093|sp|P44441|RNC_HAEIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|1572958|gb|AAC21692.1| ribonuclease III (rnc) [Haemophilus influenzae Rd KW20]
 gi|260092744|gb|EEW76680.1| ribonuclease III [Haemophilus influenzae RdAW]
          Length = 227

 Score =  141 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 82/231 (35%), Positives = 121/231 (52%), Gaps = 11/231 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L    LE++IGY F + +LL++ALTH S +    +  ERLEFLGD IL   I+  L+
Sbjct: 1   MNHLD--RLERKIGYRFNDIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE
Sbjct: 56  HQFPRCNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD G+ V    +  +++Q    +K G  ++DAKT LQE+   K    P Y+V 
Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVV 175

Query: 179 FRSGPDHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H   FTV  ++               S+R AEQ AA ++LK   I
Sbjct: 176 NIQGEAHCQIFTVKCKVKSAEKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226


>gi|15924223|ref|NP_371757.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50]
 gi|156979554|ref|YP_001441813.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu3]
 gi|255006020|ref|ZP_05144621.2| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|22654068|sp|Q931T1|RNC_STAAM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043357|sp|A7X1J9|RNC_STAA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|14247003|dbj|BAB57395.1| RNase III [Staphylococcus aureus subsp. aureus Mu50]
 gi|156721689|dbj|BAF78106.1| RNase III [Staphylococcus aureus subsp. aureus Mu3]
          Length = 243

 Score =  141 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 5/227 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             R+ T    +G+ + N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  
Sbjct: 14  RKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRY 73

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF+   +  EG L+    ++V   +    A ++ L   I +     K       S+ +D 
Sbjct: 74  LFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDA 133

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ I ALYLD G+++   F +K       ++      D KT+ QE+ H +      Y +
Sbjct: 134 FEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNL 193

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               GP H   FT  V + G A A+G   +K+ +EQ AA    K+  
Sbjct: 194 IKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAKSAYKQLK 240


>gi|260828679|ref|XP_002609290.1| hypothetical protein BRAFLDRAFT_86799 [Branchiostoma floridae]
 gi|229294646|gb|EEN65300.1| hypothetical protein BRAFLDRAFT_86799 [Branchiostoma floridae]
          Length = 1490

 Score =  141 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 9/227 (3%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            R +  E R G  F +  LL +A TH +   ++      +RLEFLGD ++ ++ S  L+ H
Sbjct: 1198 RLTEFESRCGMEFKHVRLLARAFTHRTVGFNNLTLGHNQRLEFLGDSVMQMVSSEYLYKH 1257

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V+++L +  +I  S   R+   S      AD++E+ 
Sbjct: 1258 FPDHHEGHLSLLRSSLVNNRTQALVSQDLGMEEYIISSDKARQGKLSLRQKTLADLMEAF 1317

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            + ALY+D G+E    F++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1318 MGALYVDQGLEYVCVFMNVCFFPRLREFIMNQEWNDPKSQLQQCCLTLRTEGKEPDIPFY 1377

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K+  ++GP H  ++TV V   G     G+  S + AE  AA + LK 
Sbjct: 1378 KILDKAGPSHARKYTVAVYFKGERIGTGVGSSIQQAEMAAARDALKN 1424



 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 51/103 (49%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S+ L+  F   +EG L+    ++V  +  + +A++L L  F+
Sbjct: 1088 NHNERLEFLGDAVVEFLTSSHLYFMFPDLEEGGLATYRTAIVQNQHLAVLAKKLRLDEFM 1147

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
              +        S +    A+ +E+LI A+Y+  G+E       
Sbjct: 1148 LYAHGPDLCRESDLRHAMANCLEALIGAMYMQQGLEETKKLFC 1190



 Score = 43.0 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
             + L++ +G  F +RSLLE ALTH S   ++  +
Sbjct: 1001 LNELDQLLGSKFEDRSLLELALTHPSHHLNFGMN 1034


>gi|15643859|ref|NP_228908.1| ribonuclease III [Thermotoga maritima MSB8]
 gi|7531194|sp|Q9X0I6|RNC_THEMA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|4981647|gb|AAD36178.1|AE001769_8 ribonuclease III [Thermotoga maritima MSB8]
          Length = 240

 Score =  141 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 9/227 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58
               +K  G  F N  LL +AL HSS ++          ES E+LEFLGD +L L +  +
Sbjct: 9   VEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEI 68

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  +  A+ G+L+   ++  S E  + V+R+++L  F+ +     K       SI AD 
Sbjct: 69  LYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADA 128

Query: 119 VESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            E+L+AA+YLD G E        +  +    +  G+   D KT LQE   ++  V PEY 
Sbjct: 129 FEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYI 188

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +      D D  F V V ++G   A G   +K+ AE+ AA    ++ 
Sbjct: 189 LVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL 235


>gi|317059911|ref|ZP_07924396.1| ribonuclease 3 [Fusobacterium sp. D12]
 gi|313685587|gb|EFS22422.1| ribonuclease 3 [Fusobacterium sp. D12]
          Length = 235

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 115/233 (49%), Gaps = 9/233 (3%)

Query: 1   MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLL 54
           MSA+      LE  I Y F +++LL+ AL H S  + ++     + ERLE LGD +LGL+
Sbjct: 1   MSAVGRNLVDLEHNINYYFNDKNLLKNALIHRSFGNEHRTYKNINNERLELLGDAVLGLV 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           ++  L+  +   KEG L+   +  VS    S V+R+L +  ++ +S            SI
Sbjct: 61  VAEYLYQKYPKEKEGVLAKIKSMAVSEPVLSGVSRKLHIGDYLLLSKGEIVTGGRDRNSI 120

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVT 172
             D  E+++ A+YLD G   A  +V  + K+       F    D KT LQE    KF   
Sbjct: 121 LGDAFEAILGAIYLDSGFFAAKEYVLFHLKEIIDHIDDFEEILDFKTILQEHCQKKFKEI 180

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           P+Y +    GPDH   F + V+I     A+    +K+ AEQ AA ++ K  G+
Sbjct: 181 PKYTLLREEGPDHRKLFEMQVQIQDKV-ARAKGNNKKIAEQKAAKKLCKEMGV 232


>gi|284048724|ref|YP_003399063.1| ribonuclease III [Acidaminococcus fermentans DSM 20731]
 gi|283952945|gb|ADB47748.1| ribonuclease III [Acidaminococcus fermentans DSM 20731]
          Length = 234

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 106/233 (45%), Gaps = 10/233 (4%)

Query: 1   MSALRYSTLE---KRIGYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILG 52
           M   R   LE   +++G    +  LL+ ALTH+S ++  +++      +RLEFLGD +L 
Sbjct: 1   MEEQRQKELEGLCRQLGMEMKDLHLLDMALTHTSYAYESKKNPRPQHNQRLEFLGDSVLS 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L++ST ++       EGELS     LV  ET +Q+A E  L   + +             
Sbjct: 61  LVVSTHIYKTCPQMDEGELSKLRAFLVCEETLAQLATENHLGDHLLLGKGEINLDGEENP 120

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFG 170
           SI AD  ES++ A YLD G       +++    R  +       RD KT LQE       
Sbjct: 121 SILADAFESVLGAYYLDQGFARVTGLLNRLLISRIPELTADGIDRDYKTRLQEVVQKDGP 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               Y      GP H+  F + V ++G    +G   +K+ AEQ AA E LK  
Sbjct: 181 AEILYDQVSAEGPSHNRTFVMRVLVNGNELGKGRGRTKKEAEQRAAREALKAL 233


>gi|82750837|ref|YP_416578.1| ribonuclease III [Staphylococcus aureus RF122]
 gi|90101646|sp|Q2YXI3|RNC_STAAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|82656368|emb|CAI80786.1| Ribonuclease III [Staphylococcus aureus RF122]
          Length = 243

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 5/227 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             R+ T    +G+ + N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  
Sbjct: 14  RKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRY 73

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF+   +  EG L+    ++V   +    A ++ L   I +     K       S+ +DV
Sbjct: 74  LFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDV 133

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ I ALYLD G+++   F +K       ++      D KT+ QE+ H +      Y +
Sbjct: 134 FEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNL 193

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               GP H   FT  V + G A A+G   +K+ +EQ AA    K+  
Sbjct: 194 IKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLK 240


>gi|313124070|ref|YP_004034329.1| ribonuclease iii [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280633|gb|ADQ61352.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 231

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 97/229 (42%), Gaps = 6/229 (2%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++   L+++ G  F +  LLE+A THSS  +        +YE+LEFLGD +L   +
Sbjct: 1   MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ HF    EGEL+   +++V  E  S+VA +      I++     K       ++ 
Sbjct: 61  SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKKEIKLGVGEEKAGGRKRKALL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            DV E+   AL+LD GIE    F+ +                     +    + G     
Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFLRQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIE 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                      P F V V + G   A G   +K+ AEQ AA+  L+   
Sbjct: 181 YRVLNESQQP-PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228


>gi|27066029|pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From
           Thermotoga Maritima At 2.0 A Resolution
 gi|27066030|pdb|1O0W|B Chain B, Crystal Structure Of Ribonuclease Iii (Tm1102) From
           Thermotoga Maritima At 2.0 A Resolution
          Length = 252

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 9/227 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58
               +K  G  F N  LL +AL HSS ++          ES E+LEFLGD +L L +  +
Sbjct: 21  VEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEI 80

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  +  A+ G+L+   ++  S E  + V+R+++L  F+ +     K       SI AD 
Sbjct: 81  LYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADA 140

Query: 119 VESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            E+L+AA+YLD G E        +  +    +  G+   D KT LQE   ++  V PEY 
Sbjct: 141 FEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYI 200

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +      D D  F V V ++G   A G   +K+ AE+ AA    ++ 
Sbjct: 201 LVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL 247


>gi|24372926|ref|NP_716968.1| ribonuclease III [Shewanella oneidensis MR-1]
 gi|81462673|sp|Q8EH81|RNC_SHEON RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|24347062|gb|AAN54413.1|AE015579_2 ribonuclease III [Shewanella oneidensis MR-1]
          Length = 226

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 82/228 (35%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     L + +GY F N  LL +ALTH S ++   +  ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNLPRLCRTLGYEFKNLDLLTQALTHRSAAN---KHNERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +T + +A+   L  ++ +     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVRGDTLTLIAQAFKLGDYLFLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  +EV    +  ++ +R   ++ G  ++DAKT LQE+        P+Y+V
Sbjct: 118 EAIIGAIYLDSDLEVCRQLLLNWYAERLAEIQPGINQKDAKTLLQEYLQGLKKPLPDYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
               G  HD  FTV   I  L+ +  G+  S+R AEQ+AAA+VL+   
Sbjct: 178 INIEGDAHDQTFTVECRIDDLSQSVIGVASSRRKAEQIAAAQVLELLK 225


>gi|15926816|ref|NP_374349.1| ribonuclease III [Staphylococcus aureus subsp. aureus N315]
 gi|21282845|ref|NP_645933.1| ribonuclease III [Staphylococcus aureus subsp. aureus MW2]
 gi|49483396|ref|YP_040620.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486072|ref|YP_043293.1| ribonuclease III [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651802|ref|YP_186108.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL]
 gi|87160069|ref|YP_493823.1| ribonuclease III [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194940|ref|YP_499740.1| ribonuclease III [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148267724|ref|YP_001246667.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH9]
 gi|150393782|ref|YP_001316457.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH1]
 gi|151221355|ref|YP_001332177.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509405|ref|YP_001575064.1| ribonuclease III [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142023|ref|ZP_03566516.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253315591|ref|ZP_04838804.1| ribonuclease III [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253731850|ref|ZP_04866015.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253733529|ref|ZP_04867694.1| RNase III [Staphylococcus aureus subsp. aureus TCH130]
 gi|257425287|ref|ZP_05601712.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427947|ref|ZP_05604345.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430580|ref|ZP_05606962.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433341|ref|ZP_05609699.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410]
 gi|257436183|ref|ZP_05612230.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876]
 gi|257795711|ref|ZP_05644690.1| ribonuclease III [Staphylococcus aureus A9781]
 gi|258415935|ref|ZP_05682205.1| ribonuclease III [Staphylococcus aureus A9763]
 gi|258419682|ref|ZP_05682649.1| ribonuclease III [Staphylococcus aureus A9719]
 gi|258423926|ref|ZP_05686811.1| ribonuclease III [Staphylococcus aureus A9635]
 gi|258434853|ref|ZP_05688927.1| ribonuclease III [Staphylococcus aureus A9299]
 gi|258444571|ref|ZP_05692900.1| ribonuclease III [Staphylococcus aureus A8115]
 gi|258447596|ref|ZP_05695740.1| ribonuclease III [Staphylococcus aureus A6300]
 gi|258449438|ref|ZP_05697541.1| ribonuclease III [Staphylococcus aureus A6224]
 gi|258454817|ref|ZP_05702781.1| ribonuclease III [Staphylococcus aureus A5937]
 gi|262048131|ref|ZP_06021018.1| RNase III [Staphylococcus aureus D30]
 gi|262051862|ref|ZP_06024078.1| RNase III [Staphylococcus aureus 930918-3]
 gi|269202849|ref|YP_003282118.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98]
 gi|282892720|ref|ZP_06300955.1| ribonuclease III [Staphylococcus aureus A8117]
 gi|282903787|ref|ZP_06311675.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160]
 gi|282905551|ref|ZP_06313406.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908526|ref|ZP_06316356.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910805|ref|ZP_06318608.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914009|ref|ZP_06321796.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899]
 gi|282916483|ref|ZP_06324245.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139]
 gi|282918931|ref|ZP_06326666.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427]
 gi|282920016|ref|ZP_06327745.1| ribonuclease III [Staphylococcus aureus A9765]
 gi|282924054|ref|ZP_06331730.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101]
 gi|282927574|ref|ZP_06335190.1| ribonuclease III [Staphylococcus aureus A10102]
 gi|283770295|ref|ZP_06343187.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19]
 gi|283957975|ref|ZP_06375426.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284024157|ref|ZP_06378555.1| ribonuclease III [Staphylococcus aureus subsp. aureus 132]
 gi|293501041|ref|ZP_06666892.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510001|ref|ZP_06668709.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809]
 gi|293526589|ref|ZP_06671274.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015]
 gi|294848227|ref|ZP_06788974.1| ribonuclease III [Staphylococcus aureus A9754]
 gi|295407172|ref|ZP_06816973.1| ribonuclease III [Staphylococcus aureus A8819]
 gi|295427719|ref|ZP_06820351.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296274790|ref|ZP_06857297.1| ribonuclease III [Staphylococcus aureus subsp. aureus MR1]
 gi|297208123|ref|ZP_06924554.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245941|ref|ZP_06929800.1| ribonuclease III [Staphylococcus aureus A8796]
 gi|297591322|ref|ZP_06949960.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8]
 gi|300912203|ref|ZP_07129646.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381203|ref|ZP_07363856.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|54039243|sp|P66669|RNC_STAAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54041615|sp|P66668|RNC_STAAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56749389|sp|Q6G9Y0|RNC_STAAS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56749418|sp|Q6GHK2|RNC_STAAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|73917582|sp|Q5HGJ9|RNC_STAAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122539710|sp|Q2FZ50|RNC_STAA8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|123486215|sp|Q2FHK5|RNC_STAA3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043358|sp|A6U152|RNC_STAA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043359|sp|A5ISB8|RNC_STAA9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043360|sp|A6QGD3|RNC_STAAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043361|sp|A8Z3R9|RNC_STAAT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|13701033|dbj|BAB42328.1| RNase III [Staphylococcus aureus subsp. aureus N315]
 gi|21204284|dbj|BAB94981.1| RNase III [Staphylococcus aureus subsp. aureus MW2]
 gi|49241525|emb|CAG40211.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244515|emb|CAG42944.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285988|gb|AAW38082.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL]
 gi|87126043|gb|ABD20557.1| ribonuclease III [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202498|gb|ABD30308.1| ribonuclease III, putative [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740793|gb|ABQ49091.1| RNAse III [Staphylococcus aureus subsp. aureus JH9]
 gi|149946234|gb|ABR52170.1| Ribonuclease III [Staphylococcus aureus subsp. aureus JH1]
 gi|150374155|dbj|BAF67415.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368214|gb|ABX29185.1| ribonuclease III [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724449|gb|EES93178.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253728583|gb|EES97312.1| RNase III [Staphylococcus aureus subsp. aureus TCH130]
 gi|257271744|gb|EEV03882.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274788|gb|EEV06275.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278708|gb|EEV09327.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281434|gb|EEV11571.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410]
 gi|257284465|gb|EEV14585.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876]
 gi|257789683|gb|EEV28023.1| ribonuclease III [Staphylococcus aureus A9781]
 gi|257839271|gb|EEV63745.1| ribonuclease III [Staphylococcus aureus A9763]
 gi|257844267|gb|EEV68649.1| ribonuclease III [Staphylococcus aureus A9719]
 gi|257845955|gb|EEV69984.1| ribonuclease III [Staphylococcus aureus A9635]
 gi|257849214|gb|EEV73196.1| ribonuclease III [Staphylococcus aureus A9299]
 gi|257850064|gb|EEV74017.1| ribonuclease III [Staphylococcus aureus A8115]
 gi|257853787|gb|EEV76746.1| ribonuclease III [Staphylococcus aureus A6300]
 gi|257857426|gb|EEV80324.1| ribonuclease III [Staphylococcus aureus A6224]
 gi|257863200|gb|EEV85964.1| ribonuclease III [Staphylococcus aureus A5937]
 gi|259160263|gb|EEW45291.1| RNase III [Staphylococcus aureus 930918-3]
 gi|259163697|gb|EEW48252.1| RNase III [Staphylococcus aureus D30]
 gi|262075139|gb|ACY11112.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98]
 gi|269940725|emb|CBI49106.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282314026|gb|EFB44418.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101]
 gi|282316741|gb|EFB47115.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427]
 gi|282319923|gb|EFB50271.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139]
 gi|282322077|gb|EFB52401.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899]
 gi|282325410|gb|EFB55719.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327588|gb|EFB57871.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330843|gb|EFB60357.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590577|gb|EFB95654.1| ribonuclease III [Staphylococcus aureus A10102]
 gi|282594732|gb|EFB99716.1| ribonuclease III [Staphylococcus aureus A9765]
 gi|282595405|gb|EFC00369.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160]
 gi|282764717|gb|EFC04842.1| ribonuclease III [Staphylococcus aureus A8117]
 gi|283460442|gb|EFC07532.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19]
 gi|283470446|emb|CAQ49657.1| ribonuclease III [Staphylococcus aureus subsp. aureus ST398]
 gi|283790124|gb|EFC28941.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285816915|gb|ADC37402.1| Ribonuclease III [Staphylococcus aureus 04-02981]
 gi|290920661|gb|EFD97724.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015]
 gi|291096046|gb|EFE26307.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466945|gb|EFF09463.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809]
 gi|294825027|gb|EFG41449.1| ribonuclease III [Staphylococcus aureus A9754]
 gi|294968025|gb|EFG44053.1| ribonuclease III [Staphylococcus aureus A8819]
 gi|295128077|gb|EFG57711.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296887366|gb|EFH26268.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177105|gb|EFH36359.1| ribonuclease III [Staphylococcus aureus A8796]
 gi|297576208|gb|EFH94924.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8]
 gi|298694526|gb|ADI97748.1| Ribonuclease III [Staphylococcus aureus subsp. aureus ED133]
 gi|300886449|gb|EFK81651.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70]
 gi|302332837|gb|ADL23030.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751056|gb|ADL65233.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340186|gb|EFM06127.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312438389|gb|ADQ77460.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829627|emb|CBX34469.1| ribonuclease III [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315131026|gb|EFT87010.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS03]
 gi|315194121|gb|EFU24514.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS00]
 gi|315198472|gb|EFU28801.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140951|gb|EFW32798.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144334|gb|EFW36100.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323441008|gb|EGA98715.1| ribonuclease III [Staphylococcus aureus O11]
 gi|323442325|gb|EGA99955.1| ribonuclease III [Staphylococcus aureus O46]
 gi|329313902|gb|AEB88315.1| Ribonuclease 3 [Staphylococcus aureus subsp. aureus T0131]
 gi|329724757|gb|EGG61262.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21189]
 gi|329727692|gb|EGG64148.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21172]
 gi|329733624|gb|EGG69952.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21193]
          Length = 243

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 5/227 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             R+ T    +G+ + N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  
Sbjct: 14  RKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRY 73

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF+   +  EG L+    ++V   +    A ++ L   I +     K       S+ +D 
Sbjct: 74  LFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDA 133

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ I ALYLD G+++   F +K       ++      D KT+ QE+ H +      Y +
Sbjct: 134 FEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNL 193

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               GP H   FT  V + G A A+G   +K+ +EQ AA    K+  
Sbjct: 194 IKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLK 240


>gi|119944412|ref|YP_942092.1| ribonuclease III [Psychromonas ingrahamii 37]
 gi|189043334|sp|A1SSM8|RNC_PSYIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|119863016|gb|ABM02493.1| RNAse III [Psychromonas ingrahamii 37]
          Length = 228

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 111/220 (50%), Gaps = 5/220 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LE+R+ Y F++ SLL++ALTH S         ERLEFLGD IL   IST L+  F  
Sbjct: 8   LKRLERRVDYTFSDFSLLQQALTHRSA---LGNHNERLEFLGDSILSYAISTDLYARFPK 64

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    +LV  +  +++ RE  L   + +     K       SI AD VE++I A
Sbjct: 65  VDEGDLSRMRATLVCGKMLAEIGREFQLGDCLILGPGELKSGGFRRDSIIADGVEAIIGA 124

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            +LD  I+     + K++  R         ++D KT LQE   ++    P Y+V    G 
Sbjct: 125 AFLDSDIDTVKKLILKWFDSRLNTIEPGISQKDPKTRLQEHLQSRKQPLPIYEVLEIKGE 184

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            H+ RFT+   I GL   QG   S+R AEQ+AA ++L   
Sbjct: 185 AHNQRFTMSCSIDGLKSVQGQGTSRRKAEQIAANKMLDSL 224


>gi|52424423|ref|YP_087560.1| ribonuclease III [Mannheimia succiniciproducens MBEL55E]
 gi|81387548|sp|Q65VN5|RNC_MANSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|52306475|gb|AAU36975.1| Rnc protein [Mannheimia succiniciproducens MBEL55E]
          Length = 224

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L    L+++I Y F + +LL++ALTH S +    +  ERLEFLGD IL   I+  L+
Sbjct: 1   MNHLD--RLQRQISYEFKDITLLKQALTHRSAA---TKHNERLEFLGDAILNYTIADALY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+  L  ++ +     K       SI AD VE
Sbjct: 56  HQFPKCNEGELSRMRATLVREPTLAILARQFKLGEYMALGHGELKSGGFRRESILADCVE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD  +  A      ++++  R +K G+ ++D KT LQE+        P Y V 
Sbjct: 116 AIIGAISLDSSLVSATQITLHWYEKLLREIKPGENQKDPKTRLQEYLQGHRLALPTYDVK 175

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H   FT+   +  L     G+  S+R AEQ AA ++L    I
Sbjct: 176 DIKGEAHCQTFTIECHVPNLDRTFIGVGSSRRKAEQAAAEQILTALEI 223


>gi|281491298|ref|YP_003353278.1| ribonuclease III [Lactococcus lactis subsp. lactis KF147]
 gi|281375039|gb|ADA64557.1| Ribonuclease III [Lactococcus lactis subsp. lactis KF147]
          Length = 231

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 102/223 (45%), Gaps = 9/223 (4%)

Query: 8   TLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
            L+K++    G  F +  LL+   THSS ++  +     + ERLEFLGD  L L+IS  L
Sbjct: 3   KLQKKLKNDYGLVFNDEDLLKTVFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYL 62

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  +    EGELS   +S+V  E+ +  +R      F+R+     K       +   ++ 
Sbjct: 63  YRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLF 122

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+ + AL++D G++    F+                 D KTELQE        T  YK+ 
Sbjct: 123 EAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVIDYKTELQEVLQIGGETTISYKIL 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GP HD  F   V  +G    +G+  SK+ AEQ AA   +K
Sbjct: 183 KEEGPAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225


>gi|257452427|ref|ZP_05617726.1| ribonuclease III [Fusobacterium sp. 3_1_5R]
          Length = 232

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 115/230 (50%), Gaps = 7/230 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
            +     LE RI Y F +++LL+ AL H S  + ++     + E+LE LGD +LGL+++ 
Sbjct: 1   MSKNLVDLEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLVVAE 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+  +   KEG L+   +  VS    + ++R+L +  ++ +S            SI  D
Sbjct: 61  YLYQKYPEEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSILGD 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEY 175
           V E+++ A+YLD G   A  +V  + K        F    D KT LQE+   K+   P+Y
Sbjct: 121 VFEAILGAIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDIPKY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            +    GPDH   F + V+I     A+    +K+ AEQ+AA ++ K  G+
Sbjct: 181 TLVGEEGPDHRKLFEMQVQIQNN-IAKAKGTNKKIAEQMAAKQLCKELGV 229


>gi|328952899|ref|YP_004370233.1| Ribonuclease 3 [Desulfobacca acetoxidans DSM 11109]
 gi|328453223|gb|AEB09052.1| Ribonuclease 3 [Desulfobacca acetoxidans DSM 11109]
          Length = 231

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 116/225 (51%), Gaps = 5/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLIST 57
           M+ +  + LE+++ Y+F NR  LE+AL HSS ++       S ERLEF GD +L L IS 
Sbjct: 1   MTDIHLTELERQLRYSFKNRRWLEQALVHSSYAYEFPLQGPSNERLEFFGDAVLSLFISD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L  ++  A EG LS    SLV+A   + +AR LDL   +R+     +       S+ AD
Sbjct: 61  FLMEYYPQAGEGLLSRWRASLVNARHLAGIARSLDLGGHLRLGRGEEQQSGRRKPSVLAD 120

Query: 118 VVESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            +E+++AA+YLDGG   A   V          L+     +D KT LQE+A     VTP Y
Sbjct: 121 ALEAVLAAVYLDGGFAAARGVVKLLFQASLTRLEDKASMQDFKTLLQEYAQKNLKVTPTY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +V   +GP H   F V V ++     +G   SK+ A Q AA   L
Sbjct: 181 RVVTATGPAHARTFEVEVWLADQPWGRGQGKSKKQAAQEAARLAL 225


>gi|167040357|ref|YP_001663342.1| ribonuclease III [Thermoanaerobacter sp. X514]
 gi|256750709|ref|ZP_05491594.1| ribonuclease III [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914441|ref|ZP_07131757.1| ribonuclease III [Thermoanaerobacter sp. X561]
 gi|307724323|ref|YP_003904074.1| ribonuclease III [Thermoanaerobacter sp. X513]
 gi|166854597|gb|ABY93006.1| Ribonuclease III [Thermoanaerobacter sp. X514]
 gi|256750292|gb|EEU63311.1| ribonuclease III [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889376|gb|EFK84522.1| ribonuclease III [Thermoanaerobacter sp. X561]
 gi|307581384|gb|ADN54783.1| ribonuclease III [Thermoanaerobacter sp. X513]
          Length = 246

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/214 (34%), Positives = 115/214 (53%), Gaps = 5/214 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTL 58
                S LE+RI Y+F +++LL +ALTHSS +H  + S    ERLEFLGD +L L+IS  
Sbjct: 16  KRENLSELEERINYSFKDKNLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEY 75

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+ +    +EG LS     +V   + ++ ARE++L +F+R+             SI AD 
Sbjct: 76  LYKNRKDLEEGSLSKYRAEIVCEPSLARCAREIELGNFLRIGKGEELTGGRERDSILADA 135

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYK 176
           +E+++AA+YLDGG+EV    + + +K    +  +    RD KT+LQE   +       Y+
Sbjct: 136 MEAILAAVYLDGGLEVVRNVILELFKNIIEEVLEGLIYRDYKTKLQEVVQSMEIGKIIYE 195

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
           +    GPDH+  F   V I  +   +G   SK+ 
Sbjct: 196 LIEEMGPDHNKTFVTQVRIGDVILGKGYGKSKKE 229


>gi|258452531|ref|ZP_05700537.1| ribonuclease III [Staphylococcus aureus A5948]
 gi|257859749|gb|EEV82591.1| ribonuclease III [Staphylococcus aureus A5948]
          Length = 243

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 5/227 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             R+ T    +G+ + N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  
Sbjct: 14  RKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRY 73

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF+   +  EG L+    ++V   +    A ++ L   I +     K       S+ +D 
Sbjct: 74  LFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDA 133

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ I ALYLD G+++   F +K       ++      D KT+ QE+ H +      Y +
Sbjct: 134 FEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNL 193

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               GP H   FT  V + G A A+G   +K+ +EQ AA    K+  
Sbjct: 194 IKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLK 240


>gi|152999778|ref|YP_001365459.1| ribonuclease III [Shewanella baltica OS185]
 gi|189043347|sp|A6WKQ7|RNC_SHEB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|151364396|gb|ABS07396.1| Ribonuclease III [Shewanella baltica OS185]
          Length = 226

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 84/228 (36%), Positives = 125/228 (54%), Gaps = 7/228 (3%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     L + +GY F N  LL +ALTH S ++   +  ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNLPRLCRTLGYEFKNIELLTQALTHRSAAN---KHNERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +T + +A+E  L  ++ +     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVRGDTLTIIAQEFKLGDYLYLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  +EV    + K++ +R   ++ G  ++DAKT LQE         P+Y+V
Sbjct: 118 EAIIGAVYLDSDLEVCRALLLKWYAERLAEIQPGISQKDAKTLLQEHLQGFKKPLPDYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
               G  HD  FTV   I  L+ +  G+  S+R AEQ+AAA+VL+   
Sbjct: 178 INIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAAAQVLELLK 225


>gi|94987013|ref|YP_594946.1| ribonuclease III [Lawsonia intracellularis PHE/MN1-00]
 gi|94731262|emb|CAJ54625.1| dsRNA-specific ribonuclease [Lawsonia intracellularis PHE/MN1-00]
          Length = 233

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 4/224 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60
           +    L++ +GY F +  LL  ALTHSS  +      E  ERLEFLGD +L + IS  LF
Sbjct: 1   MDLKELQEDLGYYFKDEQLLITALTHSSWVNENDVTAEHNERLEFLGDAVLEICISEELF 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                A+EGEL+   ++LV+ +    +AREL L  ++ ++            ++ AD +E
Sbjct: 61  KRHPEAREGELTRMRSNLVNTKMLVLLARELKLNQYLLLARGEENQGGRQRNTLLADTME 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++  A+++DG +  A   + K +     K      +D KT LQE         P+Y +  
Sbjct: 121 AVFGAVFVDGDLFYARKVISKSYDNFWPKKSAALVKDFKTRLQEETQRHIKGLPKYILEG 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP+H+  F V VE+      +      + AEQ AA   L+  
Sbjct: 181 MHGPEHEKIFEVCVELPDGQVFRASGTGLKRAEQEAARIALESL 224


>gi|309972852|gb|ADO96053.1| RNase III, dsRNA [Haemophilus influenzae R2846]
          Length = 227

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 82/231 (35%), Positives = 120/231 (51%), Gaps = 11/231 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L    LE++IGY F + +LL+ ALTH S +    +  ERLEFLGD IL   I+  L+
Sbjct: 1   MNHLD--RLERKIGYRFNDIALLKLALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE
Sbjct: 56  HQFPRCNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD G+ V    +  +++Q    +K G  ++DAKT LQE+   K    P Y+V 
Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVV 175

Query: 179 FRSGPDHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H   FTV  ++               S+R AEQ AA ++LK   I
Sbjct: 176 NIQGEAHCQIFTVECKVKSAEKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226


>gi|222085390|ref|YP_002543920.1| ribonuclease III [Agrobacterium radiobacter K84]
 gi|254807233|sp|B9JC73|RNC_AGRRK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|221722838|gb|ACM25994.1| ribonuclease III [Agrobacterium radiobacter K84]
          Length = 239

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 137/219 (62%), Positives = 166/219 (75%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           TLE  IG+AF  +  L+ ALTH+S       +YERLEFLGDR+LGL I+ LLF  F +A 
Sbjct: 14  TLEAAIGHAFVEKERLDWALTHASARTHKAGNYERLEFLGDRVLGLCIAELLFRTFGTAT 73

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EGELSVR N LVSAETC+ VA E+ L  FIR  +D++K     M +++ADVVESLIAALY
Sbjct: 74  EGELSVRLNQLVSAETCAAVADEMQLHLFIRTGADVKKLTGKRMLNVRADVVESLIAALY 133

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           LDGG+EVA  F+ +YW+ RA++    RRDAKTELQEWAHAKFGVTP Y+V  RSGPDHDP
Sbjct: 134 LDGGLEVARKFILRYWEGRAVRPDGARRDAKTELQEWAHAKFGVTPVYRVDDRSGPDHDP 193

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           RFTV VE++G AP  G++ SKRAAEQVAA  +L+REGIW
Sbjct: 194 RFTVTVEVAGAAPETGIERSKRAAEQVAATRILEREGIW 232


>gi|51473232|ref|YP_066989.1| ribonuclease III [Rickettsia typhi str. Wilmington]
 gi|81390308|sp|Q68XY5|RNC_RICTY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|51459544|gb|AAU03507.1| RNase D [Rickettsia typhi str. Wilmington]
          Length = 227

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 117/228 (51%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSS----ISHSYQESYERLEFLGDRILGLLIS 56
           M +  +  LE  +GY+F N+ LL +AL+H S      + Y + YERLEFLGD +L LLI+
Sbjct: 1   MES--FEKLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLIT 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +LF +F++ KEG L+   + LV  ET   V  +L L  +I ++            +   
Sbjct: 59  EILFKNFENYKEGNLAKIRSYLVCKETICIVGTKLALKDYIIMTHGEEVAGGRDNPNNIE 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +V E+LIAA+YLD  IE+    ++K W +          D KT LQEWA A     P Y+
Sbjct: 119 NVTEALIAAIYLDSNIEITHNIIEKLWAEFMKVQNLTDYDPKTALQEWAQASSNHLPIYR 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  R G  H   FTV+V++           S + AE+ AA  +L R  
Sbjct: 179 LIKREGAAHSSIFTVLVKVKDYEQIC-TGYSIKEAEKKAARCLLHRLK 225


>gi|304321233|ref|YP_003854876.1| ribonuclease III [Parvularcula bermudensis HTCC2503]
 gi|303300135|gb|ADM09734.1| ribonuclease III [Parvularcula bermudensis HTCC2503]
          Length = 238

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 95/213 (44%), Positives = 126/213 (59%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           G+ F +RSLL +ALTH+S+S    +  ERLEFLGDR+LGLL + LL+  F    EGEL+ 
Sbjct: 22  GHRFDDRSLLARALTHASVSQDGLKDLERLEFLGDRVLGLLAADLLWRRFPDMAEGELAP 81

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           R N+LV  ETC+  AR   L   +R+S+   +       +I  D  ESL+ A+Y+DGG+ 
Sbjct: 82  RLNALVRRETCADAARHWKLGEAVRMSAGEERTGGRNKDAILGDACESLLGAIYIDGGLG 141

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
            A T  + YW  R  +      DAKT LQEWA  K   TP Y+   R GPDH P FTV V
Sbjct: 142 AAKTAFETYWTPRVEELIDDHADAKTALQEWAQEKGLGTPSYRDIDRDGPDHAPIFTVAV 201

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            + GL  A+    +KR+A+  AA  +L REG+W
Sbjct: 202 VVQGLESAEARGPNKRSAQMQAARSILVREGVW 234


>gi|289450366|ref|YP_003474966.1| ribonuclease III [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184913|gb|ADC91338.1| ribonuclease III [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 245

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 7/226 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +    E +IGY+F N+  L +ALTHS+ S+ +     E  ERLEFLGD +LGL +   LF
Sbjct: 14  QICNFENKIGYSFKNKKYLIEALTHSTYSYEHSMYGLECNERLEFLGDLVLGLTVGNHLF 73

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +  EG+LS    +LV   T + VA   +L   + +             S  AD  E
Sbjct: 74  KTFPTYPEGKLSKLKAALVCEPTLAIVAHNWELDKVLLLGKGEETSGGRNKPSSLADATE 133

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE---LQEWAHAKFGVTPEYKV 177
           +++ A++ D     A T + +  +    ++         +   L++           + +
Sbjct: 134 AVLGAVFCDADFVAAATVILRALEPLIQEAVAGNLVYDYKSALLEKIQTKYHSSQLRFVL 193

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +GP H P F + + +     A  +  SK+ AEQ+AA + L+  
Sbjct: 194 LDETGPAHSPSFKMGIYLVNDLLATAIGSSKKEAEQIAAKQALQLL 239


>gi|253699690|ref|YP_003020879.1| ribonuclease III [Geobacter sp. M21]
 gi|251774540|gb|ACT17121.1| ribonuclease III [Geobacter sp. M21]
          Length = 232

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 120/224 (53%), Gaps = 5/224 (2%)

Query: 1   MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLIS 56
           M+ ++      +E R+GY F +R LL +ALTH +  +       +RLEF GD +L  L+S
Sbjct: 1   MNDMQHDPLEGIEGRLGYRFRDRGLLAEALTHRTYVNEAGGRDNQRLEFFGDAVLDFLLS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +L   F  ++EGEL+    +LV   + +++A ELDL   +R+     +       S+ A
Sbjct: 61  DMLLVRFPDSREGELTRIRAALVDEASLAKIAIELDLGQALRLGRGEERGGGRQKRSLLA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEY 175
           D  E+L+AALYLDGG++ A   V+  +            RDAKTELQE A    G  P Y
Sbjct: 121 DAFEALLAALYLDGGLDPARRVVEALFAPLLSSRDLLSGRDAKTELQEKARLVKGELPRY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           ++   SGPDHD RFTV V +      +G+  SK+ AEQ AA   
Sbjct: 181 QLKEVSGPDHDKRFTVEVYLGEELMGEGVGKSKKEAEQDAARAA 224


>gi|255746868|ref|ZP_05420813.1| ribonuclease III [Vibrio cholera CIRS 101]
 gi|262162033|ref|ZP_06031049.1| ribonuclease III [Vibrio cholerae INDRE 91/1]
 gi|255735270|gb|EET90670.1| ribonuclease III [Vibrio cholera CIRS 101]
 gi|262028282|gb|EEY46939.1| ribonuclease III [Vibrio cholerae INDRE 91/1]
          Length = 221

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S      +  ERLEFLGD IL  +I+  L+  F   
Sbjct: 2   NKLTSKLGYTFKETELLNLALTHRSA---NGKHNERLEFLGDSILSFVIADELYRRFPKV 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 59  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118

Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A +      + +   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 119 YLDSDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 218


>gi|15642457|ref|NP_232090.1| ribonuclease III [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121590982|ref|ZP_01678301.1| ribonuclease III [Vibrio cholerae 2740-80]
 gi|153820073|ref|ZP_01972740.1| ribonuclease III [Vibrio cholerae NCTC 8457]
 gi|153823692|ref|ZP_01976359.1| ribonuclease III [Vibrio cholerae B33]
 gi|227082582|ref|YP_002811133.1| ribonuclease III [Vibrio cholerae M66-2]
 gi|229507479|ref|ZP_04396984.1| ribonuclease III [Vibrio cholerae BX 330286]
 gi|229512326|ref|ZP_04401805.1| ribonuclease III [Vibrio cholerae B33]
 gi|229519462|ref|ZP_04408905.1| ribonuclease III [Vibrio cholerae RC9]
 gi|229606984|ref|YP_002877632.1| ribonuclease III [Vibrio cholerae MJ-1236]
 gi|254849586|ref|ZP_05238936.1| ribonuclease III [Vibrio cholerae MO10]
 gi|298500182|ref|ZP_07009987.1| ribonuclease III [Vibrio cholerae MAK 757]
 gi|18203192|sp|Q9KPB2|RNC_VIBCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807908|sp|C3LR04|RNC_VIBCM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|9657039|gb|AAF95603.1| ribonuclease III [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121547159|gb|EAX57288.1| ribonuclease III [Vibrio cholerae 2740-80]
 gi|126509385|gb|EAZ71979.1| ribonuclease III [Vibrio cholerae NCTC 8457]
 gi|126518780|gb|EAZ76003.1| ribonuclease III [Vibrio cholerae B33]
 gi|227010470|gb|ACP06682.1| ribonuclease III [Vibrio cholerae M66-2]
 gi|229344151|gb|EEO09126.1| ribonuclease III [Vibrio cholerae RC9]
 gi|229352291|gb|EEO17232.1| ribonuclease III [Vibrio cholerae B33]
 gi|229354984|gb|EEO19905.1| ribonuclease III [Vibrio cholerae BX 330286]
 gi|229369639|gb|ACQ60062.1| ribonuclease III [Vibrio cholerae MJ-1236]
 gi|254845291|gb|EET23705.1| ribonuclease III [Vibrio cholerae MO10]
 gi|297540875|gb|EFH76929.1| ribonuclease III [Vibrio cholerae MAK 757]
          Length = 225

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S      +  ERLEFLGD IL  +I+  L+  F   
Sbjct: 6   NKLTSKLGYTFKETELLNLALTHRSA---NGKHNERLEFLGDSILSFVIADELYRRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A +      + +   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222


>gi|90420862|ref|ZP_01228767.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1]
 gi|90334837|gb|EAS48609.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1]
          Length = 252

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 123/236 (52%), Positives = 155/236 (65%), Gaps = 10/236 (4%)

Query: 1   MSALR----YSTLEKRIGYAFANRSLLEKALTHSSISH------SYQESYERLEFLGDRI 50
           M+ L+       LE RIG  F  ++  E+ALTHSS+          + SYERLEFLGDR+
Sbjct: 13  MARLKADKPLEELESRIGITFHEKARFERALTHSSLRSSKGGKGEGERSYERLEFLGDRV 72

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           LGL+++  LF+ F  A EGELS+R NSLVSA+TC+++A EL L  F+R   DL+K     
Sbjct: 73  LGLVVAEKLFDMFPGADEGELSLRLNSLVSADTCAEIADELGLYEFVRHGGDLKKLKSDR 132

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
             SI+AD+VESLIAA+YL  G+E A  F+ +YW  R  KS   RRDAKT LQEWAH +  
Sbjct: 133 TKSIRADLVESLIAAIYLGEGLETARDFIVRYWGGRLGKSVAARRDAKTALQEWAHTRGP 192

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           VTP+Y++  RSGPDHDP FTV V I  +APA G   S+R AEQ AA  VL RE +W
Sbjct: 193 VTPQYEIVERSGPDHDPLFTVRVSIPDVAPADGQGRSRRIAEQEAATAVLIRESVW 248


>gi|160871765|ref|ZP_02061897.1| ribonuclease III [Rickettsiella grylli]
 gi|159120564|gb|EDP45902.1| ribonuclease III [Rickettsiella grylli]
          Length = 230

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M +    +L +++ Y F N  LLE AL+H S      ++ ERLE+LGD +L  +I+  LF
Sbjct: 1   MKS-EIESLCEKLNYQFKNPELLEDALSHRSF--RGNKNNERLEYLGDAVLNFVIAAALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                A+EGELS    +LV  ET + +A+  +L  ++R+ +   K   +   SI AD +E
Sbjct: 58  RQNIKAREGELSRLRANLVRGETLTDLAQGFELGKYLRLGAGELKTGGAQRKSILADGME 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+YLDGG +   T + +++  R   ++     +D KT+LQE+  AK    P Y + 
Sbjct: 118 AVVGAIYLDGGFQACETCILRWYANRLENIEMIPDLKDPKTQLQEYLQAKKLALPVYTIL 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225
              GP H   F V  +I GL   A G+  S+R AEQ AA ++L+   I
Sbjct: 178 ALEGPAHQQSFKVECQIQGLPHKAIGLGSSRRRAEQKAAEKILEELAI 225


>gi|300811711|ref|ZP_07092185.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497287|gb|EFK32335.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 231

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 95/229 (41%), Gaps = 6/229 (2%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++   L+++ G  F +  LLE+A THSS  +        +YE+LEFLGD +L   +
Sbjct: 1   MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ HF    EGEL+   +++V  E  S+VA +      I +     K       ++ 
Sbjct: 61  SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            DV E+   AL+LD GIE    F  +                     +    + G     
Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFSSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIE 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                      P F V V + G   A G   +K+ AEQ AA+  L+   
Sbjct: 181 YRVLNESQQP-PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228


>gi|57506125|ref|ZP_00372047.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195]
 gi|57015609|gb|EAL52401.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195]
          Length = 224

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   LE ++ Y F  + LL  ALTH S   +Y  + ERLEFLGD +L L++   LF+ F 
Sbjct: 3   KLELLEAKLNYKFKEQKLLIYALTHKSAKKNY--NNERLEFLGDAVLDLVVGEFLFHKFK 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+LS    +LV+ ++ +++A  L+L  FI +S   + +      SI +D  E+LI 
Sbjct: 61  NEAEGDLSKLRAALVNEKSFAKIATSLNLGDFIFMSIAEQNNGGKTKPSILSDTFEALIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL+L+ G   A     +  ++           +D KT+LQE   AK G+TPEY+     G
Sbjct: 121 ALHLEAGFIKAKEIALRLIEENFPNIDAKSLFKDYKTKLQEITQAKMGLTPEYETQRAFG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH   F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 181 PDHQKSFEIALNLEGKEMARAIASSKKEAQQMAAKLTLEKLG 222


>gi|315499946|ref|YP_004088749.1| ribonuclease iii [Asticcacaulis excentricus CB 48]
 gi|315417958|gb|ADU14598.1| ribonuclease III [Asticcacaulis excentricus CB 48]
          Length = 242

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 88/226 (38%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLF 60
              LE ++GY FA+R LL+ ALTH+S+S    +       ERLEFLGDR+LGLL++  L 
Sbjct: 16  LDELEAKLGYRFADRQLLDSALTHASVSDGRPKKTVSSDNERLEFLGDRVLGLLVAEALM 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGE+S R + LVS ETC+ VA  L + + +R++    K       +I  D  E
Sbjct: 76  QAFPQAAEGEMSQRLHGLVSRETCAAVAMSLGVGAAMRLAPGETKSGGRSNLTILGDACE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +LIAA+YLDGG E A       W+        +   + K+ LQEWA  K   +P+Y++  
Sbjct: 136 ALIAAVYLDGGFETARRIFGPLWQPHIRASHSRSHLNPKSHLQEWAAQKKLPSPKYEIVE 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           RSGPDH P F V + + G  P      S++ AE+ AA   ++  G+
Sbjct: 196 RSGPDHAPIFKVALTLEGYDPVVASGKSRQEAEKAAALSFIEHAGL 241


>gi|281413069|ref|YP_003347148.1| ribonuclease III [Thermotoga naphthophila RKU-10]
 gi|281374172|gb|ADA67734.1| ribonuclease III [Thermotoga naphthophila RKU-10]
          Length = 240

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 9/227 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58
               +K+ G  F N  LL +AL HSS ++          ES E+LEFLGD +L L +  +
Sbjct: 9   VEEFQKKTGINFKNEELLFRALCHSSYANEQNQAGRKNVESNEKLEFLGDAVLELFVCEI 68

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  +  A+ G+L+   ++  S E  + V+R+++L  F+ +     K       SI AD 
Sbjct: 69  LYKKYPEAEVGDLARAKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADA 128

Query: 119 VESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            E+L+AA+YLD G E        +  +    +  G+   D KT LQE   ++  V PEY 
Sbjct: 129 FEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMRGEMLFDYKTALQEIVQSEHKVPPEYV 188

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +      D D  F V V + G + A G   +K+ AE+ AA    ++ 
Sbjct: 189 LVRTEKNDGDRIFVVEVRVDGKSIAMGRGRTKKEAEKEAARIAYEKL 235


>gi|325126041|gb|ADY85371.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 231

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 6/229 (2%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++   L+++ G  F +  LLE+A THSS  +        +YE+LEFLGD +L   +
Sbjct: 1   MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ HF    EGEL+   +++V  E  S+VA +      I +     K       ++ 
Sbjct: 61  SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            DV E+   AL+LD GIE    F+ +                     +    + G     
Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFLSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIE 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                      P F V V + G   A G   +K+ AEQ AA+  L+   
Sbjct: 181 YRVLNESQQP-PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228


>gi|104774253|ref|YP_619233.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103423334|emb|CAI98181.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 231

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 6/229 (2%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++   L+++ G  F +  LLE+A THSS  +        +YE+LEFLGD +L   +
Sbjct: 1   MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTFGNYEKLEFLGDAVLEFTV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ HF    EGEL+   +++V  E  S+VA +      I +     K       ++ 
Sbjct: 61  SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            DV E+   AL+LD GIE    F+ +                     +    + G     
Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFLSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIE 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                      P F V V + G   A G   +K+ AEQ AA+  L+   
Sbjct: 181 YRVLNESQQP-PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228


>gi|325971140|ref|YP_004247331.1| ribonuclease 3 [Spirochaeta sp. Buddy]
 gi|324026378|gb|ADY13137.1| Ribonuclease 3 [Spirochaeta sp. Buddy]
          Length = 248

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/215 (31%), Positives = 112/215 (52%), Gaps = 5/215 (2%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
               +N  LL  A TH S ++   +   + ERLEFLGD +LG+ ++  LF +F +  EG+
Sbjct: 28  KITISNLELLNLAFTHRSFANETSDSVDNNERLEFLGDSVLGMCVADWLFRNFPAKAEGD 87

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
            S   + +VS ++ + +AR+L +  ++ +             ++ AD +E+L AA YLD 
Sbjct: 88  FSKIKSVVVSEDSLAMIARQLSVDKYLLLGKGEEFTGGRDKKALLADCMEALFAACYLDS 147

Query: 131 GIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           G E A +FV  Y +Q+        + RD KT LQE+   ++   P Y +  ++GP+HD  
Sbjct: 148 GFEAAKSFVMLYLEQQIQAVLDDDYHRDYKTSLQEYMQKRWRKVPSYTLVRKTGPEHDFT 207

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F V V+++G         +K+ AEQ+AA     + 
Sbjct: 208 FFVEVDVNGQVFGPASGANKKQAEQMAAKLAYDQL 242


>gi|71892313|ref|YP_278047.1| RNase III [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|90101614|sp|Q492D1|RNC_BLOPB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71796419|gb|AAZ41170.1| RNase III [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 229

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 116/226 (51%), Gaps = 9/226 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  + L++++GY F    LL +ALTH S S+   +  ERLEFLGD IL  +I+ LL++ F
Sbjct: 1   MLVNALQEKLGYIFNRYDLLLQALTHRSSSN---QHNERLEFLGDAILNYVIANLLYHRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG +S    +LV   T + +ARE +L  ++++     K       SI A+ +E+LI
Sbjct: 58  PHISEGGMSRMRANLVRENTLATLAREFNLGDYLQLGQGELKSGGYQRESILANTIEALI 117

Query: 124 AALYLDGGIE-----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
             ++LD  I+     +   +  +        S   ++D KT LQE+   +    P Y + 
Sbjct: 118 GGIFLDSNIQTIEILIINWYKIRIDHMDPYASYDTQKDPKTRLQEYMQRRRLPLPVYWIN 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FT+  ++S L  P  G   S+R AEQ AAA+VL+  
Sbjct: 178 QIIGEAHNQIFTINCQVSELTQPIIGCGSSRRRAEQNAAAKVLEAL 223


>gi|148270763|ref|YP_001245223.1| ribonuclease III [Thermotoga petrophila RKU-1]
 gi|189043372|sp|A5IN74|RNC_THEP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|147736307|gb|ABQ47647.1| RNAse III [Thermotoga petrophila RKU-1]
          Length = 240

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 9/227 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58
               +K+ G  F N  LL +AL HSS ++          ES E+LEFLGD +L L +  +
Sbjct: 9   VEEFQKKTGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEI 68

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  +  A+ G+L+   ++  S E  + V+REL+L  F+ +     K       SI AD 
Sbjct: 69  LYKKYPEAEVGDLARAKSAAASEEVLAMVSRELNLGKFLFLGKGEEKTGGRDRDSILADA 128

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYK 176
            E+L+AA+YLD G        ++ ++    K    +   D KT LQE   ++  V PEY 
Sbjct: 129 FEALLAAIYLDQGYHKIKELFEEEFELYIEKIMRGEMLFDYKTALQEIVQSEHKVPPEYV 188

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +      D D  F V V + G + A G   +K+ AE+ AA    ++ 
Sbjct: 189 LVRTEKNDGDRIFVVEVRVDGKSIAMGRGRTKKEAEKEAARIAYEKL 235


>gi|51892591|ref|YP_075282.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863]
 gi|81388984|sp|Q67PF5|RNC_SYMTH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|51856280|dbj|BAD40438.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863]
          Length = 235

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/214 (33%), Positives = 111/214 (51%), Gaps = 5/214 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           + +GY F + SLL +ALTH++ ++ +    + ERLEFLGD +LG++I+  L+  +    E
Sbjct: 16  EALGYEFRDESLLLEALTHTTYANEHPRARANERLEFLGDSVLGMVIAAHLYERYPDLPE 75

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GEL+    ++V   + ++ AR L +   +R              S  +D  E+++ ALYL
Sbjct: 76  GELTKIRAAVVCEPSLAERARVLGIGRHMRFGRG-EAVSGRDRDSTLSDAFEAVVGALYL 134

Query: 129 DGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           DGG+E A  FV +   Q    + +   R D KT+LQE    +    P+Y++    GP H 
Sbjct: 135 DGGLEAAQRFVLRELGQLVEAARQGLVRVDYKTQLQEQLQRQGAAAPQYRLLVEEGPAHL 194

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            RF V V   G     G   +K+ AEQ AA + L
Sbjct: 195 RRFQVGVYFEGRLLGTGWGRNKKEAEQEAARQAL 228


>gi|319896432|ref|YP_004134625.1| ribonuclease iii [Haemophilus influenzae F3031]
 gi|317431934|emb|CBY80282.1| Ribonuclease III [Haemophilus influenzae F3031]
          Length = 227

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/231 (35%), Positives = 121/231 (52%), Gaps = 11/231 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L    LE++IGY F +  LL++ALTH S +    +  ERLEFLGD IL   I+  L+
Sbjct: 1   MNHLD--RLERKIGYCFNDIVLLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE
Sbjct: 56  HQFPRCNEGELSRMRATLVRESTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD G+ V    +  +++Q    +K G  ++DAKT LQE+   K    P Y+V 
Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVV 175

Query: 179 FRSGPDHDPRFTVVVEIS--GLA--PAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H   FTV  ++   G           S+R AEQ AA ++LK   I
Sbjct: 176 NIQGEAHCQIFTVECKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226


>gi|329121261|ref|ZP_08249888.1| ribonuclease III [Dialister micraerophilus DSM 19965]
 gi|327470195|gb|EGF15658.1| ribonuclease III [Dialister micraerophilus DSM 19965]
          Length = 239

 Score =  140 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 111/232 (47%), Gaps = 9/232 (3%)

Query: 1   MSALRYSTLEKRIG---YAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGL 53
           M   R   LE+ I        N  LL  ALTH+S ++ ++++     ERLEFLGD +L L
Sbjct: 1   MHKNRIKELEEFIKENEIPIENHELLNIALTHTSYANEHKKNKEHDNERLEFLGDAVLDL 60

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           ++   LF  +    EGEL+    S V    C++++  L++  ++ +     K       S
Sbjct: 61  IVGEYLFRKYPLWSEGELTKAKASAVCKPACAEISTRLNVGKYLLLGKGEEKSGGRTRVS 120

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGV 171
           I  D  ESLI A+YLD G EV   FV K+ ++       G + +D KT+LQE       V
Sbjct: 121 ILGDAFESLIGAIYLDIGYEVTFDFVIKHLEKFLDLIMQGDYDKDYKTDLQEILQQNGDV 180

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              Y V    GPDHD    + V   G     G+  SK+ A Q AA E ++R 
Sbjct: 181 EICYNVIHDEGPDHDKTIWMSVTADGKYLGSGIGKSKKQAAQRAAKEAIERI 232


>gi|315917454|ref|ZP_07913694.1| ribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691329|gb|EFS28164.1| ribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
          Length = 235

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 9/233 (3%)

Query: 1   MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLL 54
           MS++      LE RI Y F +++LL+ AL H S  + ++     + E+LE LGD +LGL+
Sbjct: 1   MSSVSKNLVDLEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLV 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           ++  L+  +   KEG L+   +  VS    + ++R+L +  ++ +S            SI
Sbjct: 61  VAEYLYQKYPEEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSI 120

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVT 172
             DV E+++ A+YLD G   A  +V  + K        F    D KT LQE+   K+   
Sbjct: 121 LGDVFEAILGAIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDI 180

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           P+Y +    GPDH   F + V+I     A+    +K+ AEQ+AA ++ K  G+
Sbjct: 181 PKYTLVGEEGPDHRKLFEMQVQIQNN-IAKAKGTNKKVAEQMAAKQLCKELGV 232


>gi|117924215|ref|YP_864832.1| ribonuclease III [Magnetococcus sp. MC-1]
 gi|189043326|sp|A0L633|RNC_MAGSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|117607971|gb|ABK43426.1| RNAse III [Magnetococcus sp. MC-1]
          Length = 246

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 79/237 (33%), Positives = 115/237 (48%), Gaps = 14/237 (5%)

Query: 1   MSALR----YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--------SYERLEFLGD 48
           M+A R       LE+ + Y F    LL+ ALTH S      +          ERLEFLGD
Sbjct: 1   MNAQREPSGLERLEQALDYRFTQSDLLQLALTHRSAPLDGSKAGEVVATTHNERLEFLGD 60

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
            +L L++S  L+  F    EG+LS     LV+  + S+VA++L+L  ++R+     K   
Sbjct: 61  SVLNLIVSHRLYKRFGEVPEGQLSQWRAMLVNTRSLSEVAKDLELGRYLRMGRGEAKSGG 120

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAH 166
               SI  + +E+L+ A+YLDGG E A   VD+ +  +   ++  +  +D KT LQE+  
Sbjct: 121 REKYSILGNALEALLGAIYLDGGFEAAERVVDRLFAHQVAGIEPEQQGKDYKTLLQEYLQ 180

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           A+    P Y V    GP H+  F V           G   SKR AEQ AA + L+  
Sbjct: 181 ARGEALPIYAVLSAEGPPHERVFVVSCHPREQLCGHGQGRSKREAEQHAAQQALELL 237


>gi|57866684|ref|YP_188382.1| ribonuclease III [Staphylococcus epidermidis RP62A]
 gi|242242516|ref|ZP_04796961.1| ribonuclease III [Staphylococcus epidermidis W23144]
 gi|73917583|sp|Q5HPV8|RNC_STAEQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|57637342|gb|AAW54130.1| ribonuclease III [Staphylococcus epidermidis RP62A]
 gi|242234024|gb|EES36336.1| ribonuclease III [Staphylococcus epidermidis W23144]
 gi|319401475|gb|EFV89685.1| ribonuclease III [Staphylococcus epidermidis FRI909]
          Length = 245

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 5/225 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +++   K +G  F N  L ++A +HSS  + +     E  ERLEFLGD +L L +S  LF
Sbjct: 16  KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +      EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + + ALYLD G++   TF +K               D KT+ QE+ H++      Y++  
Sbjct: 136 AFVGALYLDQGLDTVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIK 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GP H   FT  V +   A A+G   +K+ +EQ AA +  K   
Sbjct: 196 EEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYKLMK 240


>gi|157374287|ref|YP_001472887.1| ribonuclease III [Shewanella sediminis HAW-EB3]
 gi|189043354|sp|A8FSD6|RNC_SHESH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157316661|gb|ABV35759.1| Ribonuclease III [Shewanella sediminis HAW-EB3]
          Length = 225

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 81/227 (35%), Positives = 115/227 (50%), Gaps = 6/227 (2%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     L + +GY F ++SLLE ALTH S S    +  ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNMPRLCRTLGYEFNDQSLLEHALTHRSAS---SKHNERLEFLGDSILSIIISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F+ F  A EG+LS    +LV  +  +++  E  L  ++ +     K       SI AD V
Sbjct: 58  FHQFPKATEGDLSRMRATLVCGKMLAEIGFEFKLGDYLNLGPGELKSGGFRRESIIADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVT 178
           E++I A+Y+D G+E     V  +++ R        ++D KT LQE         P YKV 
Sbjct: 118 EAIIGAVYIDSGVEKCRCLVLSWYESRLAIIQPVNQKDPKTLLQELLQGFKKPLPVYKVI 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224
              G  H   FTV   +  L  P  G+  S+R AEQ+AAA+ L+   
Sbjct: 178 DIKGEAHAQTFTVECYVEELSKPVIGIASSRRKAEQLAAADALELMK 224


>gi|227543196|ref|ZP_03973245.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181005|gb|EEI61977.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 250

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 4/219 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           + ++ L +++G   +   LL  ALTH S ++      + ERLEFLGD +LG  ++  LF 
Sbjct: 20  VDHAPLLEKLGTTVS-PELLRLALTHRSFANENGGLPNNERLEFLGDSVLGCSVAWKLFE 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + S+ E  +S     +VS    + +ARE+ L  +I +             SI AD  E+
Sbjct: 79  TYPSSPESVISKMRARIVSRFGLADIAREIGLGKYILLGRGEILTDGREKDSILADTTEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           L  A++L+ G E A   +   + ++ +  S          L +   A+  +         
Sbjct: 139 LFGAIFLEHGFETARHTILTLFHEKIVHASSDSIHTDWKTLLQERAAERKLPMPEYEASF 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +GPDHD  FT    I G     G   +K+AAEQ+AA + 
Sbjct: 199 TGPDHDRFFTATAIIDGKVVGTGQGHNKKAAEQLAAKQA 237


>gi|226951500|ref|ZP_03821964.1| ds RNA ribonuclease III [Acinetobacter sp. ATCC 27244]
 gi|294651022|ref|ZP_06728362.1| ribonuclease III [Acinetobacter haemolyticus ATCC 19194]
 gi|226837793|gb|EEH70176.1| ds RNA ribonuclease III [Acinetobacter sp. ATCC 27244]
 gi|292823123|gb|EFF81986.1| ribonuclease III [Acinetobacter haemolyticus ATCC 19194]
          Length = 231

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 116/225 (51%), Gaps = 5/225 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           + L  + L+ RIGY F    LL+ ALTH S+SH +  +YERLEFLGD +LG++I+  L++
Sbjct: 7   NKLNDTRLQARIGYQFQQIDLLKLALTHRSVSHKH--NYERLEFLGDSLLGMIIANYLYH 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VE+
Sbjct: 65  TYPTENEGRLTRMRATLVRQEALGKIANDLQLSRSLILSTGELKSGGHHRESILADTVEA 124

Query: 122 LIAALYLDGGIE---VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +I A+Y+D                     ++     +D K+ LQE+  A+    P Y+V 
Sbjct: 125 IIGAIYIDSNDLNLLQGIVLKWYEPYFDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 184

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G   +  F V   + GL   QG   S+R AEQ AAAE+LK  
Sbjct: 185 DIQGDAPNQHFKVECLVDGLPKIQGEGSSRRFAEQTAAAEILKLL 229


>gi|163744855|ref|ZP_02152215.1| ribonuclease III [Oceanibulbus indolifex HEL-45]
 gi|161381673|gb|EDQ06082.1| ribonuclease III [Oceanibulbus indolifex HEL-45]
          Length = 228

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 92/219 (42%), Positives = 129/219 (58%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
                E RIG++FA   LL +A+TH+S+S + ++  +RLEFLGDR+LGL+++  L     
Sbjct: 6   DLKAFEARIGHSFAKPELLVRAVTHASMSSANRDDNQRLEFLGDRVLGLVMAEALLALDP 65

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG+L+ RFN+LV  ETC+ VARE+DL   +++             ++  D +E++IA
Sbjct: 66  GATEGQLAPRFNALVRKETCADVAREIDLGKVLKLGRSEMISGGRRKQALLGDAIEAVIA 125

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLD G E A   V + W  R     +  RDAKT LQEWA A+  + P Y  T RSGPD
Sbjct: 126 AVYLDSGFEAAKGLVLRLWGDRLKTVKEDARDAKTALQEWAQARGLMPPRYVQTDRSGPD 185

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H P FT+   +   A A     SKRAAEQ AA  +L++ 
Sbjct: 186 HAPVFTITARLDNGAEAAATAPSKRAAEQAAATTLLRQL 224


>gi|257462242|ref|ZP_05626659.1| ribonuclease III [Fusobacterium sp. D12]
          Length = 232

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 7/227 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
               LE  I Y F +++LL+ AL H S  + ++     + ERLE LGD +LGL+++  L+
Sbjct: 4   NLVDLEHNINYYFNDKNLLKNALIHRSFGNEHRTYKNINNERLELLGDAVLGLVVAEYLY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +   KEG L+   +  VS    S V+R+L +  ++ +S            SI  D  E
Sbjct: 64  QKYPKEKEGVLAKIKSMAVSEPVLSGVSRKLHIGDYLLLSKGEIVTGGRDRNSILGDAFE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+YLD G   A  +V  + K+       F    D KT LQE    KF   P+Y + 
Sbjct: 124 AILGAIYLDSGFFAAKEYVLFHLKEIIDHIDDFEEILDFKTILQEHCQKKFKEIPKYTLL 183

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              GPDH   F + V+I     A+    +K+ AEQ AA ++ K  G+
Sbjct: 184 REEGPDHRKLFEMQVQIQDKV-ARAKGNNKKIAEQKAAKKLCKEMGV 229


>gi|323142424|ref|ZP_08077250.1| ribonuclease III [Phascolarctobacterium sp. YIT 12067]
 gi|322413117|gb|EFY04010.1| ribonuclease III [Phascolarctobacterium sp. YIT 12067]
          Length = 239

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 108/226 (47%), Gaps = 7/226 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLL 59
           +  +  + +G    +  LL+ ALTH+S +H  ++       ER+EFLGD +L +++ST +
Sbjct: 8   QLQSFCQGLGIHMHDLELLDMALTHTSYAHEAKQYPKPHHNERIEFLGDSVLSVIVSTYM 67

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + +F    EG+L+     LV   +  + A+++ L  ++++             SI AD  
Sbjct: 68  YKNFPDLAEGQLTKLRAYLVCEGSLYEYAKKIHLGDYLQLGKGEELSGGRERPSILADAF 127

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           ES++ A+YLD G EV   ++    +       +     D KT LQE+          Y +
Sbjct: 128 ESVLGAIYLDQGFEVVQAYLLGMMQSEIDFICRHGIFNDYKTRLQEYLQRDGDADIHYVL 187

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +GP+H+  FT  V +      +G   +K+ +EQ AA + L + 
Sbjct: 188 LGSTGPEHNKVFTSQVMLGNTVIGEGSGRTKKDSEQHAAKQALAQL 233


>gi|293366802|ref|ZP_06613478.1| ribonuclease III [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319103|gb|EFE59473.1| ribonuclease III [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329736553|gb|EGG72819.1| ribonuclease III [Staphylococcus epidermidis VCU045]
          Length = 245

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 5/225 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +++   K +G  F N  L ++A +HSS  + +     E  ERLEFLGD +L L +S  LF
Sbjct: 16  KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +      EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + + ALYLD G++   TF +K               D KT+ QE+ H++      Y++  
Sbjct: 136 AFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIK 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GP H   FT  V +   A A+G   +K+ +EQ AA +  K   
Sbjct: 196 EEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYKLMK 240


>gi|127511987|ref|YP_001093184.1| ribonuclease III [Shewanella loihica PV-4]
 gi|189043350|sp|A3QBS7|RNC_SHELP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|126637282|gb|ABO22925.1| RNAse III [Shewanella loihica PV-4]
          Length = 225

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     L + +GY F   +LLE+ALTH S +    +  ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNLPRLGRILGYQFQQIALLEQALTHRSAA---SKHNERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +  +++A+E  L  ++++     K       SI AD +
Sbjct: 58  YHQFPKATEGDLSRMRATLVCGKMLAEIAKEFKLGDYLKLGPGELKSGGFRRESILADAM 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVT 178
           E++I A+YLD  IE   T V  ++K R        ++D KT LQE         P Y V 
Sbjct: 118 EAIIGAIYLDADIETCRTLVLNWYKSRLAVIEPVNQKDPKTLLQEHLQGFKQPLPVYTVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
             SG  H   FTV  ++  L  A  G+  S+R AEQ+AAAEVL+R  
Sbjct: 178 NISGEAHAQTFTVECKVEQLKEAVIGVANSRRKAEQIAAAEVLERIK 224


>gi|331084978|ref|ZP_08334065.1| ribonuclease III [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330408678|gb|EGG88143.1| ribonuclease III [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 84/225 (37%), Positives = 114/225 (50%), Gaps = 8/225 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60
           R   LEK+IGY F  + LL+KA+ HSS ++      Q+  ERLEFLGD +L L  S  LF
Sbjct: 3   RLKELEKKIGYTFQKKELLQKAMMHSSYTNEKHMKKQDCNERLEFLGDAVLELTTSEALF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               S  EGEL+    S+V     + VA+EL L S++ +             SI +D VE
Sbjct: 63  FDNPSMPEGELTKTRASIVCEPALAFVAKELMLGSYLLLGKGEEATGGRQRDSITSDAVE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+YLDGG   A  F+ K+         K   D+KT LQE   AKF     Y +   
Sbjct: 123 ALIGAIYLDGGFASAKEFIQKFILSDLENK-KLFYDSKTILQEMVQAKFTENVRYVLEKE 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKR 222
            GPDH+  FT    I       G   +K+A+EQ AA +   +L++
Sbjct: 182 EGPDHNKSFTTSAYIGEECYGTGSGRTKKASEQEAAYQTILMLRK 226


>gi|152978261|ref|YP_001343890.1| ribonuclease III [Actinobacillus succinogenes 130Z]
 gi|189043288|sp|A6VLV8|RNC_ACTSZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|150839984|gb|ABR73955.1| Ribonuclease III [Actinobacillus succinogenes 130Z]
          Length = 224

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 120/223 (53%), Gaps = 6/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L+ +IGY F+N +LL++ALTH S +  +    ERLEFLGD IL L I   L+  F  
Sbjct: 4   LDRLQHKIGYEFSNLTLLKQALTHRSAAKVH---NERLEFLGDAILNLTIGEALYLQFPH 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV  +T +++A + DL +++ + +   K       SI AD VE++I A
Sbjct: 61  CNEGELSRMRATLVREKTLAELAHQFDLGNYMALGAGELKSGGFRRASILADCVEAIIGA 120

Query: 126 LYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           + LD  +      V ++++   R ++ G+ ++D KT LQE+   K    P Y VT   G 
Sbjct: 121 MSLDSNLPKTMEIVRRWYEVLLRDIQPGENQKDPKTRLQEYLQGKRLALPAYNVTDIQGE 180

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
            H   FTV   +  L     G+  S+R AEQVAA ++LK   I
Sbjct: 181 AHCQTFTVECHVENLDRTFVGVAGSRRKAEQVAAEQILKVLDI 223


>gi|254293934|ref|YP_003059957.1| ribonuclease III [Hirschia baltica ATCC 49814]
 gi|254042465|gb|ACT59260.1| ribonuclease III [Hirschia baltica ATCC 49814]
          Length = 255

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 85/220 (38%), Positives = 131/220 (59%), Gaps = 2/220 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           +T+++  G  F + SLL++A TH+S         S ERLEFLGDR+LGL+ ++ L   F+
Sbjct: 33  ATIQEIAGIKFKDVSLLDRAFTHTSAVPGEAADWSNERLEFLGDRVLGLVAASQLITRFE 92

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+ R N+LVS +TC+++A E++L  ++ + +       +   S+ A+V E+LI 
Sbjct: 93  KEREGGLAPRLNALVSRDTCAKIAAEINLGQYLILDASESSAGGTTKPSLLANVTEALIG 152

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLD G+  +  F+ KYWK+         RD K+ LQEWA       P Y+   R+GPD
Sbjct: 153 AIYLDAGLAASERFIVKYWKEYFKTLTDVPRDPKSALQEWAQGDGRPAPNYENIDRTGPD 212

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FTV V + G+ PA+G   SK+ A++ AA+ +L   G
Sbjct: 213 HAPVFTVEVRVEGVRPAKGEGSSKQEAQRAAASAMLNNVG 252


>gi|227488592|ref|ZP_03918908.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091486|gb|EEI26798.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 250

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 4/219 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           + ++ L +++G   +   LL  ALTH S ++      + ERLEFLGD +LG  ++  LF 
Sbjct: 20  VDHAPLLEKLGTTVS-PELLRLALTHRSFANENGGLPNNERLEFLGDSVLGCSVAWKLFE 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + S+ E  +S     +VS    + +ARE+ L  +I +             SI AD  E+
Sbjct: 79  TYPSSPESVISKMRARIVSRFGLADIAREIGLGKYILLGRGEILTDGRDKDSILADTTEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +  A++L+ G E A   +   + ++ +  S          L +   A+  +         
Sbjct: 139 IFGAIFLEHGFEAARHTILTLFHEKIVHASSDSIHTDWKTLLQERAAERKLPMPEYEASF 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +GPDHD  FT    I G     G   +K+AAEQ+AA + 
Sbjct: 199 TGPDHDRFFTATAIIDGKVVGTGQGHNKKAAEQLAAKQA 237


>gi|163790810|ref|ZP_02185235.1| Ribonuclease (RNase III) [Carnobacterium sp. AT7]
 gi|159873878|gb|EDP67957.1| Ribonuclease (RNase III) [Carnobacterium sp. AT7]
          Length = 231

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 109/225 (48%), Gaps = 5/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M     + L+ + G  F + S LE+A THSS  + ++       ER+EFLGD +L L +S
Sbjct: 1   MDEAFLTHLKTKFGLVFQDLSYLEEAFTHSSYVNEHRNLKLKDNERIEFLGDAVLELTVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  + +  EG+L+    ++V   + SQ A+E +   FIR+     +       ++  
Sbjct: 61  RFLYELYPNVPEGKLTRLRATIVCEASFSQFAKEYEFDQFIRLGKGEERMNGRKRPALLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ ES + ALYLD G++    F+++    +          D KT LQE+   K  +  EY
Sbjct: 121 DLFESFVGALYLDQGLDGVLFFLEQTIFPKIKSGAFSHVMDHKTNLQEFLQQKGEIEIEY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            +    GP H   F V V   G    QG   +K+AAEQVAA   L
Sbjct: 181 NLVDEIGPAHQKAFVVEVLAEGQLLGQGQGKTKKAAEQVAAENAL 225


>gi|83593187|ref|YP_426939.1| RNAse III [Rhodospirillum rubrum ATCC 11170]
 gi|83576101|gb|ABC22652.1| RNAse III [Rhodospirillum rubrum ATCC 11170]
          Length = 221

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 83/219 (37%), Positives = 119/219 (54%), Gaps = 2/219 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + L+  + + F + +LL +ALTH S     + SYERLEFLGDR+LGL+++ +L+  F 
Sbjct: 4   DLNALQIALDHRFTDPALLARALTHRS--REGRPSYERLEFLGDRVLGLVVAEMLYARFP 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG L+ R  SLV  +T ++VA+ + L   + +S    +    F  S+  DV E+++ 
Sbjct: 62  TEDEGALARRHASLVRQDTVARVAQSVGLGELMELSRGEEELGGQFNPSLLCDVCEAVLG 121

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           AL+LDGG   A  FV+  W     +     +DAKT LQEWA  +    P Y V  R GP 
Sbjct: 122 ALHLDGGYAKAQRFVEARWAPLMAEDLTPPKDAKTALQEWAQGRGLPLPTYAVEGRDGPP 181

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H P FTV V +        +  SKR AEQ AA  +L R 
Sbjct: 182 HKPMFTVSVTVKDNGSESALGASKRLAEQAAAQRLLDRL 220


>gi|85860141|ref|YP_462343.1| ribonuclease III [Syntrophus aciditrophicus SB]
 gi|85723232|gb|ABC78175.1| ribonuclease III [Syntrophus aciditrophicus SB]
          Length = 240

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 109/224 (48%), Gaps = 6/224 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
              LE  +  AF + +LL+ AL H S  +          ERLEFLGD +L L IS LL  
Sbjct: 9   LKKLESHLSCAFRDITLLDNALVHRSYVNENPSLSFADNERLEFLGDAVLELCISDLLMK 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+LS    S+V+ +  +++A++  + SFI +             SI A+ +E+
Sbjct: 69  AFPDYSEGQLSKLRASVVNEQPLAELAKKCRIGSFILLGKGEESSGGRSKPSILANTMEA 128

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + AA++LDGG + A  FV + +             +D KT LQE +  +F   P Y++  
Sbjct: 129 ITAAVFLDGGFDRAYEFVRRLFTPLIEEGNRSATYKDYKTTLQELSQNRFREIPRYRLIG 188

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GPDHD  F   + I G+    G   SK+ AEQ AA + L   
Sbjct: 189 EYGPDHDKLFESGLSIPGIIETTGKGKSKKEAEQHAAHKALDEL 232


>gi|254439178|ref|ZP_05052672.1| ribonuclease III [Octadecabacter antarcticus 307]
 gi|198254624|gb|EDY78938.1| ribonuclease III [Octadecabacter antarcticus 307]
          Length = 229

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 91/217 (41%), Positives = 124/217 (57%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
               + RIG+ FA    L +A+THSS+S   ++  +RLEFLGDR+LGL++S  L     +
Sbjct: 7   LREFQDRIGHTFAKPDQLIRAVTHSSMSSPNRDDNQRLEFLGDRVLGLVMSEALLQADVN 66

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EG L+ RFN+LV  ETC+ VARE+DL + +++             ++ AD +E++IAA
Sbjct: 67  APEGLLAPRFNALVRKETCADVAREIDLGAVLKLGRSEMLTGGRRKEALLADAMEAVIAA 126

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +Y+D G +VA   V   W  R     K  RD KT LQEWA  +    P Y  T RSGPDH
Sbjct: 127 VYIDAGFDVARERVVALWGDRITNVEKDARDPKTALQEWAQGQGEPPPSYIETARSGPDH 186

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            P FT+ V +       G   SKR AEQ AA  +L+R
Sbjct: 187 APIFTIEVRLQSGPTDIGQAPSKRQAEQAAAKSLLER 223


>gi|258645853|ref|ZP_05733322.1| ribonuclease III [Dialister invisus DSM 15470]
 gi|260403226|gb|EEW96773.1| ribonuclease III [Dialister invisus DSM 15470]
          Length = 249

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/216 (31%), Positives = 103/216 (47%), Gaps = 6/216 (2%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
                N  LL  ALTH+S ++ ++       ERLEFLGD +L L +   LF  F    EG
Sbjct: 23  DIPVHNMELLNVALTHTSYANEHRNLKVHDNERLEFLGDAVLDLAVGDYLFRRFPEWPEG 82

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +L+    S+V    C++ A    +  ++ +             SI  +  ES+I A+YLD
Sbjct: 83  DLTRAKASVVCKPACAECAANFHVGDYMLLGRGEEMSGGRTRVSILGNAFESVIGAVYLD 142

Query: 130 GGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            G EVA  F+  + ++       G +  D K++LQE A     V   Y+V    GPDHD 
Sbjct: 143 NGYEVAAKFILGHMQKFLDLVDQGIYDHDYKSDLQEIAQKNGDVDIRYEVVRDEGPDHDK 202

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              + + I+G A   G+  +K+ A Q AA E ++R 
Sbjct: 203 TIWMELFINGKALGTGIGKNKKEAAQNAAKEAIERL 238


>gi|257466297|ref|ZP_05630608.1| ribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
          Length = 232

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 115/230 (50%), Gaps = 7/230 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
            +     LE RI Y F +++LL+ AL H S  + ++     + E+LE LGD +LGL+++ 
Sbjct: 1   MSKNLVDLEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLVVAE 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+  +   KEG L+   +  VS    + ++R+L +  ++ +S            SI  D
Sbjct: 61  YLYQKYPEEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSILGD 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEY 175
           V E+++ A+YLD G   A  +V  + K        F    D KT LQE+   K+   P+Y
Sbjct: 121 VFEAILGAIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDIPKY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            +    GPDH   F + V+I     A+    +K+ AEQ+AA ++ K  G+
Sbjct: 181 TLVGEEGPDHRKLFEMQVQIQNN-IAKAKGTNKKVAEQMAAKQLCKELGV 229


>gi|116514343|ref|YP_813249.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093658|gb|ABJ58811.1| RNAse III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 231

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 6/229 (2%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++   L+++ G  F +  LLE+A THSS  +        +YE+LEFLGD +L   +
Sbjct: 1   MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYLNENPGKTLGNYEKLEFLGDAVLEFTV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ HF    EGEL+   +++V  E  S+VA +      I +     K       ++ 
Sbjct: 61  SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            DV E+   AL+LD GIE    F+ +                     +    + G     
Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFLSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIE 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                      P F V V + G   A G   +K+ AEQ AA+  L+   
Sbjct: 181 YRVLNESQQP-PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228


>gi|145635204|ref|ZP_01790908.1| ribonuclease III [Haemophilus influenzae PittAA]
 gi|229845360|ref|ZP_04465491.1| ribonuclease III [Haemophilus influenzae 6P18H1]
 gi|145267483|gb|EDK07483.1| ribonuclease III [Haemophilus influenzae PittAA]
 gi|229811668|gb|EEP47366.1| ribonuclease III [Haemophilus influenzae 6P18H1]
          Length = 227

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 83/231 (35%), Positives = 121/231 (52%), Gaps = 11/231 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L    LE++IGY F N +LL++ALTH S +    +  ERLEFLGD IL   I+  L+
Sbjct: 1   MNHLD--RLERKIGYCFNNIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE
Sbjct: 56  HQFPRCNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD G+ V    +  +++Q    +K G  ++DAKT LQE+   K    P Y+V 
Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVV 175

Query: 179 FRSGPDHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H   FTV  ++               S+R AEQ AA ++LK   I
Sbjct: 176 NIQGEAHCQIFTVKCKVKSAEKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226


>gi|291539668|emb|CBL12779.1| RNAse III [Roseburia intestinalis XB6B4]
          Length = 228

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/209 (33%), Positives = 106/209 (50%), Gaps = 5/209 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +   L+ RIGY F    LL +ALTHSS ++          ERLEFLGD +L ++ S  L+
Sbjct: 3   KLQELQNRIGYTFEKEGLLRQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSDFLY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++    EG+L+    S+V   T +   RE+DL  ++ +     +       SI +D +E
Sbjct: 63  RNYPDLPEGDLTKLRASIVCEPTLALCTREMDLGDYLLLGKGENQTGGRKRKSILSDALE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           S+I A+YLDGG E A  F+ K+     ++  K   D+KT LQE     +  +  Y++   
Sbjct: 123 SVIGAIYLDGGFEPAKKFIHKFIL-TDIEHKKLFYDSKTILQEVVQGNYKESLHYELISE 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GPDHD +F+V   I       G   +K+
Sbjct: 182 EGPDHDKQFSVEARIGDKVIGSGTGHTKK 210


>gi|188581484|ref|YP_001924929.1| ribonuclease III [Methylobacterium populi BJ001]
 gi|179344982|gb|ACB80394.1| Ribonuclease III [Methylobacterium populi BJ001]
          Length = 256

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 89/222 (40%), Positives = 121/222 (54%), Gaps = 2/222 (0%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63
            + LE RIG+ F + +LL  ALTH S +       SY+RLEFLGDR+LGL ++  L+   
Sbjct: 24  LAVLEARIGHVFTDPTLLPLALTHVSKAGPSGRVGSYQRLEFLGDRVLGLAVAETLYRAL 83

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A+EGELS R   LV  ETC+ VA   ++   + +     +       +I ADV E+++
Sbjct: 84  PDAEEGELSRRLAGLVRRETCAAVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAIL 143

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++LD G E     V + ++          RDAK+ LQEWA A+    P Y+V  RSGP
Sbjct: 144 GAVFLDAGYEATRAIVQRSFRPGEDTGAPRGRDAKSALQEWAMARSLAIPVYEVVERSGP 203

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           DH P F + V +  + P  G   SKR AEQ AA  VL RE I
Sbjct: 204 DHAPVFRIAVRVESIEPGYGEGASKRVAEQEAARAVLDRENI 245


>gi|224368198|ref|YP_002602361.1| two domain fusion protein Includes: metal-dependent phosphoesterase
           / ribonuclease III [Desulfobacterium autotrophicum HRM2]
 gi|223690914|gb|ACN14197.1| two domain fusion protein Includes: metal-dependent phosphoesterase
           / ribonuclease III [Desulfobacterium autotrophicum HRM2]
          Length = 520

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 83/226 (36%), Positives = 114/226 (50%), Gaps = 7/226 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLF 60
           R   LEK +G+ FANR LLE AL HSS  +  Q +     +RLEF+GD +LGL I  +L 
Sbjct: 292 RLEILEKNLGHTFANRELLENALRHSSYVNELQANQVPDNQRLEFMGDAVLGLTIGQILM 351

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG LS    +LVS    + +AR++DL  FIR+    R    S   SI AD  E
Sbjct: 352 EEHPGMNEGSLSKARAALVSEPALASMARQIDLGRFIRLGKGERLSRGSEKNSILADAFE 411

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++AA+YLD G +     V + +  +           D K+ LQE+   K    P Y + 
Sbjct: 412 AVMAAIYLDCGFKQTCALVKEQFISQIKLINSAPEIEDFKSMLQEFVQEKGNTPPCYTIH 471

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDHD  F++ V+   +  + G   SK+AAEQ AA   LK   
Sbjct: 472 REFGPDHDKTFSICVKACDIE-SMGSGKSKKAAEQHAAQNALKSLK 516


>gi|27467826|ref|NP_764463.1| RNase III [Staphylococcus epidermidis ATCC 12228]
 gi|251810663|ref|ZP_04825136.1| RNase III [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876335|ref|ZP_06285202.1| ribonuclease III [Staphylococcus epidermidis SK135]
 gi|32129970|sp|Q8CPI1|RNC_STAES RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|27315371|gb|AAO04505.1|AE016747_2 RNase III [Staphylococcus epidermidis ATCC 12228]
 gi|251805823|gb|EES58480.1| RNase III [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295360|gb|EFA87887.1| ribonuclease III [Staphylococcus epidermidis SK135]
 gi|329736334|gb|EGG72606.1| ribonuclease III [Staphylococcus epidermidis VCU028]
          Length = 245

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 5/225 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +++   K +G  F N  L ++A +HSS  + +     E  ERLEFLGD +L L +S  LF
Sbjct: 16  KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +      EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + + ALYLD G++   TF +K               D KT+ QE+ H++      Y++  
Sbjct: 136 AFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIK 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GP H   FT  V +   A A+G   +K+ +EQ AA +  K   
Sbjct: 196 EEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYKLMK 240


>gi|308234556|ref|ZP_07665293.1| ribonuclease III [Atopobium vaginae DSM 15829]
 gi|328944154|ref|ZP_08241619.1| ribonuclease III [Atopobium vaginae DSM 15829]
 gi|327492123|gb|EGF23897.1| ribonuclease III [Atopobium vaginae DSM 15829]
          Length = 233

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 110/224 (49%), Gaps = 3/224 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
           R    E+ I Y F N+ L++ A+TH S         SYERLEFLGD ILG +++T +F  
Sbjct: 6   RIKHAEQIIEYTFENKRLIQAAITHPSAVEGLPVSASYERLEFLGDSILGAIVATDMFEK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+    SLVS +T S VA EL +   I      +       TS   +V ESL
Sbjct: 66  FPGMDEGALTRMKISLVSGKTLSMVAEELGIGECIIFGDSEKGTGVRGFTSALENVYESL 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + ALYL+ G E    F+ +      +    K     K+ LQE    +F + P Y++   +
Sbjct: 126 VGALYLEAGYEPTVKFIRRTLTPYMVPELAKHPISPKSRLQEVCQKRFHIAPVYELEDET 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           GP H P+FT  V + G    +G   SK+ ++ +AA   L +  +
Sbjct: 186 GPAHAPQFTSAVFVDGELMGRGTGSSKKESQSIAALSALDKLDV 229


>gi|118594601|ref|ZP_01551948.1| ribonuclease III [Methylophilales bacterium HTCC2181]
 gi|118440379|gb|EAV47006.1| ribonuclease III [Methylophilales bacterium HTCC2181]
          Length = 243

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 115/227 (50%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++ +   +E  +G+ F +++L++ ALTH S      E+ ERLEFLGD IL  +++ LL+
Sbjct: 15  MNSNQIEQIESILGHTFKDKALIKIALTHRSA---KGENNERLEFLGDGILNFIVAELLY 71

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+LS   + LV   T   +A+ L +  F+ +     K       SI AD +E
Sbjct: 72  VRFQQLSEGDLSRLRSQLVKESTLCDIAKNLTIGDFLLLGEGELKSAGWRRPSILADSLE 131

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD GI    +F+++ + +    +   K  +D K+ LQE+   K    PEY V 
Sbjct: 132 AIIAAIYLDDGIGKVKSFIERRFNEHIITIDPNKIHKDDKSLLQEFLQGKKIAIPEYTVI 191

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREG 224
              G  H   F V   I  L   + G   S++ AEQ AA   L   G
Sbjct: 192 EIEGEPHAQVFEVKCRIPKLNIEKIGKGPSRKIAEQNAANLALIYLG 238


>gi|308048449|ref|YP_003912015.1| RNAse III [Ferrimonas balearica DSM 9799]
 gi|307630639|gb|ADN74941.1| RNAse III [Ferrimonas balearica DSM 9799]
          Length = 224

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 122/226 (53%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+  + + L+  +GY F + +LL +ALTH S +    +  ERLE+LGD +L  +I+  L+
Sbjct: 1   MNNQKLTRLQDALGYQFKDIALLNQALTHRSAA---SQHNERLEYLGDAVLSFVIAEALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+++    SLV   T +++ REL L   I++     K       SI AD VE
Sbjct: 58  LRFPKVAEGDMTRMRASLVKGVTLAELGRELALGDVIKLGPGELKSGGFRRESILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+YLDGGIEV    + + ++ R         ++D KT LQE   A+    PEY+V 
Sbjct: 118 AILGAVYLDGGIEVCKPLILRLYQARLDIIEPGIRQKDPKTRLQEHLQARKQPLPEYEVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+ RFTV   +S L  P  G   S+R AEQ AA+ VL++ 
Sbjct: 178 SVEGDAHNQRFTVRCSVSALAEPMIGNGSSRRKAEQDAASRVLEQL 223


>gi|313896309|ref|ZP_07829862.1| ribonuclease III [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529287|ref|ZP_08030377.1| ribonuclease III [Selenomonas artemidis F0399]
 gi|312975108|gb|EFR40570.1| ribonuclease III [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320138461|gb|EFW30353.1| ribonuclease III [Selenomonas artemidis F0399]
          Length = 238

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 5/224 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNH 62
              L   +G AF+N +LL++ALTH S ++  ++S    ERLEFLGD +L L  ST L+ H
Sbjct: 13  LERLAAHMGVAFSNIALLDEALTHPSYANESRDSIPHNERLEFLGDAVLELASSTYLYKH 72

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGEL+    SLV ++T +++AR L L   +R+     +   +   +   +V E++
Sbjct: 73  FPQCSEGELTKMRASLVQSDTLARLARRLHLGRHLRLGHGELRGGGADRQNNLENVFEAV 132

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD--AKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLD G E A  +V              +     KT LQE       ++  Y++   
Sbjct: 133 IGAVYLDRGWESARDYVCTQLVPEIGNVQPAQVRCDYKTTLQEHVQKDRHMSVAYELVGE 192

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGPDHD RFT  V + G    +G   SK+ AEQ AAA  L + G
Sbjct: 193 SGPDHDKRFTTRVLVGGETLGEGTGPSKKKAEQQAAAHALSKLG 236


>gi|227824522|ref|ZP_03989354.1| ribonuclease [Acidaminococcus sp. D21]
 gi|226905021|gb|EEH90939.1| ribonuclease [Acidaminococcus sp. D21]
          Length = 238

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 108/231 (46%), Gaps = 10/231 (4%)

Query: 1   MSALRYSTLEK---RIGYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILG 52
           M   R   LE    R+G    + SL++ ALTHSS ++  +E       +RLEFLGD +L 
Sbjct: 1   MRKERKEALESFLVRLGVTMQDLSLMDTALTHSSYAYECKEKVVPEFNQRLEFLGDSVLS 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L++ST L+  +    EG LS     LV  ET +++A++L +  ++ +          +  
Sbjct: 61  LVVSTHLYLAYPEMDEGALSKFRAFLVCEETLAELAQDLAIGDYLLLGRGECHMGGRYNP 120

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFG 170
           SI AD  ES++ A YLD G E     + +    +  +       RD KT  QE   A+  
Sbjct: 121 SILADAFESVMGAYYLDAGYEKVRDLLTRVLIDKIPELTADGIDRDYKTRFQELIQAQGQ 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               Y+     GP H+  F + V +       G   +K+ AEQ AA E L+
Sbjct: 181 TDIHYEEAGFDGPPHNRTFFMKVIVGEKTYGTGSGRTKKLAEQRAAREALR 231


>gi|209695943|ref|YP_002263873.1| ribonuclease III [Aliivibrio salmonicida LFI1238]
 gi|208009896|emb|CAQ80209.1| ribonuclease III (RNase III) [Aliivibrio salmonicida LFI1238]
          Length = 223

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 73/218 (33%), Positives = 109/218 (50%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LE++IGY F +   L+ ALTH S         ERLEFLGD IL  +++  L++ F  
Sbjct: 5   LQRLERKIGYKFNDEGFLKLALTHRSA---NGTHNERLEFLGDSILSFVVADELYHRFPK 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG++S    +LV   T +++ RE +L  ++ +     K       SI AD VE++I  
Sbjct: 62  VDEGDMSRMRATLVRGHTLAELGREFELGDYLFLGPGELKSGGFRRDSILADAVEAIIGG 121

Query: 126 LYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD   EV    +      +  +++ G  ++D KT LQE+   +    P Y VT   G 
Sbjct: 122 IYLDSDTEVIRRIILAWYKTRLDSIEPGISQKDPKTRLQEYLQGRRKPLPTYTVTKIKGE 181

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220
            H+  FT+   ++GL  P  G   S+R AEQ AA   L
Sbjct: 182 AHNQEFTIECIVAGLDKPVIGKGSSRRKAEQSAADIAL 219


>gi|166154508|ref|YP_001654626.1| ribonuclease III [Chlamydia trachomatis 434/Bu]
 gi|255348658|ref|ZP_05380665.1| ribonuclease III [Chlamydia trachomatis 70]
 gi|255503198|ref|ZP_05381588.1| ribonuclease III [Chlamydia trachomatis 70s]
 gi|301335768|ref|ZP_07224012.1| ribonuclease III [Chlamydia trachomatis L2tet1]
 gi|238687367|sp|B0B7L3|RNC_CHLT2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|165930496|emb|CAP03989.1| ribonuclease III [Chlamydia trachomatis 434/Bu]
 gi|289525336|emb|CBJ14812.1| ribonuclease III [Chlamydia trachomatis Sweden2]
 gi|296434887|gb|ADH17065.1| ribonuclease III [Chlamydia trachomatis E/150]
 gi|296438607|gb|ADH20760.1| ribonuclease III [Chlamydia trachomatis E/11023]
          Length = 231

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 3/220 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLF 60
           +    +E ++ + F++  LL  ALTH S  + +   +E  ERLEFLGD +LGL+++  LF
Sbjct: 5   VDIQAIESKLNFTFSHPRLLITALTHPSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHLF 64

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +  EG LS    +LV+AE C +  ++L L   + +    +        S  A++ E
Sbjct: 65  LLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLFE 124

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +++ A+YLDGG+  A   +      +         + K  LQ++      V P YK    
Sbjct: 125 AILGAVYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALPW 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              D  P + V V ++G    +G   SK+ AE++AA + L
Sbjct: 185 KSEDGSPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224


>gi|255506876|ref|ZP_05382515.1| ribonuclease III [Chlamydia trachomatis D(s)2923]
          Length = 231

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 3/220 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLF 60
           +    +E ++ + F++  LL  ALTH S  + +   +E  ERLEFLGD +LGL+++  LF
Sbjct: 5   VDIQAIESKLNFTFSHPKLLITALTHPSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHLF 64

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +  EG LS    +LV+AE C +  ++L L   + +    +        S  A++ E
Sbjct: 65  LLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLFE 124

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +++ A+YLDGG+  A   +      +         + K  LQ++      V P YK    
Sbjct: 125 AILGAVYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALPW 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              D  P + V V ++G    +G   SK+ AE++AA + L
Sbjct: 185 KSEDGSPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224


>gi|30179749|sp|O69161|RNC_BRAJA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 250

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 100/222 (45%), Positives = 144/222 (64%), Gaps = 3/222 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
           + LE RIG++FA+ +LL + +TH S   S +   +SY+RLEFLGD +LGL++S +L++ F
Sbjct: 23  AALEARIGHSFADPNLLMQGITHVSALKSGRKRGDSYQRLEFLGDHVLGLVVSDMLYHAF 82

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +A EGELS R   LV  E+C+ VA+ L L   I++ S           S+  D+ E++I
Sbjct: 83  PNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSADARLRKSVLGDICEAVI 142

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++LDGG   A  FV + W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP
Sbjct: 143 GAIFLDGGHAAAAEFVKRNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 202

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            HDP+F V V++ GLAPA+G+  SKRAAE+VAA+ +++REG+
Sbjct: 203 HHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASVMIEREGV 244


>gi|27380172|ref|NP_771701.1| RNase III [Bradyrhizobium japonicum USDA 110]
 gi|27353326|dbj|BAC50326.1| RNase III [Bradyrhizobium japonicum USDA 110]
          Length = 273

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 100/222 (45%), Positives = 144/222 (64%), Gaps = 3/222 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
           + LE RIG++FA+ +LL + +TH S   S +   +SY+RLEFLGD +LGL++S +L++ F
Sbjct: 46  AALEARIGHSFADPNLLMQGITHVSALKSGRKRGDSYQRLEFLGDHVLGLVVSDMLYHAF 105

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +A EGELS R   LV  E+C+ VA+ L L   I++ S           S+  D+ E++I
Sbjct: 106 PNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSADARLRKSVLGDICEAVI 165

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++LDGG   A  FV + W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP
Sbjct: 166 GAIFLDGGHAAAAEFVKRNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 225

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            HDP+F V V++ GLAPA+G+  SKRAAE+VAA+ +++REG+
Sbjct: 226 HHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASVMIEREGV 267


>gi|195941524|ref|ZP_03086906.1| ribonuclease III (rnc) [Borrelia burgdorferi 80a]
 gi|216264636|ref|ZP_03436628.1| ribonuclease III [Borrelia burgdorferi 156a]
 gi|218249229|ref|YP_002375205.1| ribonuclease III [Borrelia burgdorferi ZS7]
 gi|221217995|ref|ZP_03589462.1| ribonuclease III [Borrelia burgdorferi 72a]
 gi|223889463|ref|ZP_03624049.1| ribonuclease III [Borrelia burgdorferi 64b]
 gi|224532354|ref|ZP_03672984.1| ribonuclease III [Borrelia burgdorferi WI91-23]
 gi|224533390|ref|ZP_03673984.1| ribonuclease III [Borrelia burgdorferi CA-11.2a]
 gi|225548949|ref|ZP_03769926.1| ribonuclease III [Borrelia burgdorferi 94a]
 gi|225549922|ref|ZP_03770883.1| ribonuclease III [Borrelia burgdorferi 118a]
 gi|226320458|ref|ZP_03796024.1| ribonuclease III [Borrelia burgdorferi 29805]
 gi|226321403|ref|ZP_03796930.1| ribonuclease III [Borrelia burgdorferi Bol26]
 gi|215981109|gb|EEC21916.1| ribonuclease III [Borrelia burgdorferi 156a]
 gi|218164417|gb|ACK74478.1| ribonuclease III [Borrelia burgdorferi ZS7]
 gi|221192301|gb|EEE18521.1| ribonuclease III [Borrelia burgdorferi 72a]
 gi|223885149|gb|EEF56253.1| ribonuclease III [Borrelia burgdorferi 64b]
 gi|224512661|gb|EEF83032.1| ribonuclease III [Borrelia burgdorferi WI91-23]
 gi|224513555|gb|EEF83912.1| ribonuclease III [Borrelia burgdorferi CA-11.2a]
 gi|225369381|gb|EEG98833.1| ribonuclease III [Borrelia burgdorferi 118a]
 gi|225370552|gb|EEG99988.1| ribonuclease III [Borrelia burgdorferi 94a]
 gi|226233199|gb|EEH31951.1| ribonuclease III [Borrelia burgdorferi Bol26]
 gi|226234100|gb|EEH32815.1| ribonuclease III [Borrelia burgdorferi 29805]
 gi|312147960|gb|ADQ30619.1| ribonuclease III [Borrelia burgdorferi JD1]
 gi|312148997|gb|ADQ29068.1| ribonuclease III [Borrelia burgdorferi N40]
          Length = 245

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59
             + S   + +   F+N  LL  AL HSS S+   +   + ERLEFLGD +L L+I+  L
Sbjct: 15  KSQLSKFLENLSIDFSNFDLLNTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EGELS   + +VS ++ S +ARE++L S+I +      +       I AD +
Sbjct: 75  YKTYPNKSEGELSKARSYIVSEDSLSNIAREINLGSYILLGRGEESNDGRNKKGILADAI 134

Query: 120 ESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + A+YLD G   A  FV        R + +    +D K+ LQE+   K+ ++P YK+
Sbjct: 135 EAFVGAIYLDSGFSRATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDHD  F V + +     + G   SK+ AE  AA   LK  
Sbjct: 195 DKEIGPDHDKVFCVELYVGENFISNGKGKSKKEAEMRAAEVALKAM 240


>gi|319774962|ref|YP_004137450.1| Ribonuclease III [Haemophilus influenzae F3047]
 gi|329123136|ref|ZP_08251706.1| ribonuclease III [Haemophilus aegyptius ATCC 11116]
 gi|317449553|emb|CBY85758.1| Ribonuclease III [Haemophilus influenzae F3047]
 gi|327471691|gb|EGF17133.1| ribonuclease III [Haemophilus aegyptius ATCC 11116]
          Length = 227

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 83/231 (35%), Positives = 121/231 (52%), Gaps = 11/231 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L    LE++IGY F +  LL++ALTH S +    +  ERLEFLGD IL   I+  L+
Sbjct: 1   MNHLD--RLERKIGYCFNDIVLLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE
Sbjct: 56  HQFPRCNEGELSRMRATLVRESTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD G+ V    +  +++Q    +K G  ++DAKT LQE+   K    P Y+V 
Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVI 175

Query: 179 FRSGPDHDPRFTVVVEIS--GLA--PAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H   FTV  ++   G           S+R AEQ AA ++LK   I
Sbjct: 176 NIQGEAHCQIFTVKCKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226


>gi|254283270|ref|ZP_04958238.1| ribonuclease III [gamma proteobacterium NOR51-B]
 gi|219679473|gb|EED35822.1| ribonuclease III [gamma proteobacterium NOR51-B]
          Length = 222

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +R  +LE+ IGY F + +LL++ALTH S S   + + ERLEFLGD ++  +++  LF  F
Sbjct: 1   MRRQSLEQAIGYHFRDSTLLQRALTHRSAS---RANNERLEFLGDSVINHIVAEALFLKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EG+L+     LV  E  + +A  L+LA  + + +  RK       SI AD VE++ 
Sbjct: 58  PDADEGQLTRLRAILVRGEYLAGLAHGLELADALILGAGERKSGGRQRRSILADAVEAIA 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A+ +D         V +++ +     +    +D KT LQEW  A+    P Y +    G
Sbjct: 118 GAMLIDSEFATVRKVVLQWYHEGLDEITLDAVKDPKTRLQEWLQARGEELPSYDLVQVDG 177

Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223
            DH   FTV  +++G   A  G   S+R AEQ AA   L+R 
Sbjct: 178 EDHRQSFTVTCQLAGRDLALTGRGSSRRRAEQAAAKATLERL 219


>gi|319760660|ref|YP_004124598.1| ribonuclease III [Candidatus Blochmannia vafer str. BVAF]
 gi|318039374|gb|ADV33924.1| ribonuclease III [Candidatus Blochmannia vafer str. BVAF]
          Length = 231

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS+L ++ L+ ++GY F    LLE ALTH S S+   +  ERLEFLGD IL  +++ LL+
Sbjct: 1   MSSLDFNVLQGKLGYFFCKLDLLELALTHRSFSN---QHNERLEFLGDAILNYVVANLLY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + ++   EG++S   ++LV ++T  ++A+E ++  ++++     K+      SI ++ VE
Sbjct: 58  HRYNCISEGDMSRIRSNLVCSKTLVRLAKEFNVGEYLKLGQGELKNGGISRESILSNTVE 117

Query: 121 SLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I  ++LD  ++               A+     ++D KT LQE+        P Y V 
Sbjct: 118 AIIGGVFLDSNMKTVEILINNWYLCHLNAINFMNKQKDPKTRLQEYLQRHGCPLPIYYVN 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H   FT+  +IS L  P+ G   S + AEQ AA   LK  
Sbjct: 178 RIQGKAHSQMFTIFCQISQLTDPSIGYGSSIQKAEQSAAENALKIL 223


>gi|254561469|ref|YP_003068564.1| ribonuclease III [Methylobacterium extorquens DM4]
 gi|254268747|emb|CAX24708.1| ribonuclease III [Methylobacterium extorquens DM4]
          Length = 256

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 91/222 (40%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63
            + LE RIG+ FA+ +LL  ALTH S +       SY+RLEFLGDR+LGL ++  L+   
Sbjct: 24  LAVLEARIGHVFADPTLLPLALTHVSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKAL 83

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A+EGELS R   LV  ETC+ VA   ++   + +     +       +I ADV E+++
Sbjct: 84  PGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAIL 143

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++LD G E     V + ++     +    RDAK+ LQEWA A+    P Y+V  RSGP
Sbjct: 144 GAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSGP 203

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           DH P F +   + G+ P  G   SKR AEQ AA  VL REGI
Sbjct: 204 DHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245


>gi|240138862|ref|YP_002963337.1| ribonuclease III [Methylobacterium extorquens AM1]
 gi|240008834|gb|ACS40060.1| ribonuclease III [Methylobacterium extorquens AM1]
          Length = 256

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 91/222 (40%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63
            + LE RIG+ FA+ +LL  ALTH S +       SY+RLEFLGDR+LGL ++  L+   
Sbjct: 24  LAVLEARIGHVFADPTLLPLALTHVSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKAL 83

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A+EGELS R   LV  ETC+ VA   ++   + +     +       +I ADV E+++
Sbjct: 84  PGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAIL 143

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++LD G E     V + ++     +    RDAK+ LQEWA A+    P Y+V  RSGP
Sbjct: 144 GAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSGP 203

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           DH P F +   + G+ P  G   SKR AEQ AA  VL REGI
Sbjct: 204 DHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245


>gi|163851697|ref|YP_001639740.1| ribonuclease III [Methylobacterium extorquens PA1]
 gi|163663302|gb|ABY30669.1| Ribonuclease III [Methylobacterium extorquens PA1]
          Length = 256

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 91/222 (40%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63
            + LE RIG+ FA+ +LL  ALTH S +       SY+RLEFLGDR+LGL ++  L+   
Sbjct: 24  LAVLEARIGHVFADPTLLPLALTHVSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKAL 83

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A+EGELS R   LV  ETC+ VA   ++   + +     +       +I ADV E+++
Sbjct: 84  PGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAIL 143

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++LD G E     V + ++     +    RDAK+ LQEWA A+    P Y+V  RSGP
Sbjct: 144 GAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSGP 203

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           DH P F +   + G+ P  G   SKR AEQ AA  VL REGI
Sbjct: 204 DHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245


>gi|146341377|ref|YP_001206425.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS278]
 gi|146194183|emb|CAL78204.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS278]
          Length = 357

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 100/217 (46%), Positives = 137/217 (63%), Gaps = 3/217 (1%)

Query: 12  RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           RIG+ FA+ SLL  A TH S    S    +SY+RLEFLGD +LGL++S +L+  F SA E
Sbjct: 134 RIGHRFADPSLLSTAFTHVSALKSSKKRGDSYQRLEFLGDHVLGLIVSDMLYRAFPSADE 193

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS R   LV  E+C+ VA+ L L   I++ +           S+  DV E++I A++L
Sbjct: 194 GELSKRLADLVRKESCADVAKSLGLLDDIKLGAVGAGAGARLRKSVLGDVCEAVIGAIFL 253

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG   A  FV++ W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP HDP+
Sbjct: 254 DGGYTAAAGFVERNWTERMRKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQ 313

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           F V V++ GL PA+G+  SKRAAE+VAA+ +++REG+
Sbjct: 314 FRVAVDLPGLEPAEGVGGSKRAAEKVAASVMIEREGV 350


>gi|294678827|ref|YP_003579442.1| ribonuclease III [Rhodobacter capsulatus SB 1003]
 gi|294477647|gb|ADE87035.1| ribonuclease III [Rhodobacter capsulatus SB 1003]
          Length = 228

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 88/224 (39%), Positives = 125/224 (55%), Gaps = 1/224 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  A   S    R+G+ F     L +ALTHSS+  + +   +RLEFLGDR+LGL ++  L
Sbjct: 1   MKIAADLSAFMDRLGHRFTTPEHLVRALTHSSLGSATRPDNQRLEFLGDRVLGLSMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F+    A EG+L+ RFN+LV  ETC+ VAR++DL + +++             ++  D +
Sbjct: 61  FHADGRASEGQLAPRFNALVRKETCAAVARDIDLGAVLKLGRSEMMSGGRRKDALLGDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+YLD G EVA   V + W  R        RD KT LQEWA A+    P Y+   
Sbjct: 121 EAVIAAVYLDAGFEVARALVLRLWAGRIQSVDNDARDPKTALQEWAQARGLPPPRYETLG 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           R GPDH P+F + V ++     +    SKR AEQ AA  +L+R 
Sbjct: 181 REGPDHAPQFRIAVVLASGETEEAQAGSKRNAEQAAAKALLERL 224


>gi|291277478|ref|YP_003517250.1| ribonuclease III [Helicobacter mustelae 12198]
 gi|290964672|emb|CBG40527.1| ribonuclease III [Helicobacter mustelae 12198]
          Length = 223

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 76/218 (34%), Positives = 111/218 (50%), Gaps = 4/218 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LEK I Y F N+ LL  ALTH S     +++ ERLE+LGD +L LLI   L+  F   K
Sbjct: 3   NLEKAINYHFKNQDLLLTALTHKSC--KNKKNNERLEYLGDAVLDLLIGEFLYQEFPEHK 60

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS    +LV+ ++  + A+ + L  FI +SS+   +      SI +   E+LI A+Y
Sbjct: 61  EGDLSKMRAALVNEQSFMRFAKAIHLQDFILISSNEETNQGREKPSILSSAFEALIGAVY 120

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           L+ G+E A         +   K        D KT LQE   A F   P+Y++    GPDH
Sbjct: 121 LEAGLERAKDITYHLLHKLYPKIDTQSLFTDYKTALQELTQAHFHEIPKYELLEEIGPDH 180

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +F V V I     A+ +  SK++A+Q  A    ++ 
Sbjct: 181 CKKFKVSVYIQNQEYAKAIGTSKKSAQQNCAKIAYQKI 218


>gi|254459764|ref|ZP_05073180.1| ribonuclease III [Rhodobacterales bacterium HTCC2083]
 gi|206676353|gb|EDZ40840.1| ribonuclease III [Rhodobacteraceae bacterium HTCC2083]
          Length = 228

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 89/224 (39%), Positives = 122/224 (54%), Gaps = 1/224 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     L+KRI Y F    LL +A+THSS+S   +   +RLEFLGDR+LGL+++  L
Sbjct: 1   MKLSADLQALQKRIDYRFEQGELLTEAVTHSSMSSPSRGDNQRLEFLGDRVLGLVMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                 A EG+L+ R+N+LV  ETC+ VAR++ L   +R+     K       ++  D +
Sbjct: 61  LGADVKASEGQLAPRYNALVRKETCADVARDIGLGDVLRLGRSEMKSGGRRKLALLGDGM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+LIAA+Y+DGG   A   + + W  R        RD KT LQEWA ++    P Y  T 
Sbjct: 121 EALIAAVYVDGGFNAAQALILRLWGSRITSVEADARDPKTSLQEWAQSRGLTPPAYVETA 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RSGPDH P FT+   +     A     SKR AEQ AA  +L R 
Sbjct: 181 RSGPDHAPHFTIEARLDTGETASAEAGSKRLAEQAAAKALLTRM 224


>gi|238926905|ref|ZP_04658665.1| ribonuclease III [Selenomonas flueggei ATCC 43531]
 gi|238885139|gb|EEQ48777.1| ribonuclease III [Selenomonas flueggei ATCC 43531]
          Length = 238

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 76/216 (35%), Positives = 114/216 (52%), Gaps = 8/216 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLF 60
           +R S     +   FA+ SLLE+ALTH S  +  +E     ERLEFLGD +L L IST L+
Sbjct: 14  VRLSAF---LDVDFADLSLLEEALTHPSYVNEARERATHNERLEFLGDAVLELAISTYLY 70

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EGEL+    SLV +ET +++AR L L + +R+         +   +   +V E
Sbjct: 71  VAYPHCSEGELTKMRASLVQSETLARLARRLHLGAHLRMGRGEMLGGGAERQNNLENVFE 130

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G + A ++V + + +   +  +    +D KT LQE+          Y+  
Sbjct: 131 AVIGAVYLDRGWDAAYSYVQRQFTEEVTRLRQEHAVQDYKTMLQEYVQGHRHECIAYEQV 190

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
             SGPDHD RFT+ V I      +G+  SK+ AEQ 
Sbjct: 191 AESGPDHDKRFTMRVRIGMEVLGEGIGRSKKEAEQH 226


>gi|310828474|ref|YP_003960831.1| ribonuclease III [Eubacterium limosum KIST612]
 gi|308740208|gb|ADO37868.1| ribonuclease III [Eubacterium limosum KIST612]
          Length = 222

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 67/218 (30%), Positives = 110/218 (50%), Gaps = 4/218 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +E RI Y F ++ LL+ ALTHSS S     + ERLEFLGD +L L+IS  L+ +    
Sbjct: 2   KRIEDRIAYTFKDKELLKVALTHSSHS-GTTTNNERLEFLGDAVLELIISEYLYKYNKL- 59

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+++   +++V AE+ SQ A +L+L  ++ +             S  A+  E+++ A+
Sbjct: 60  SEGKMTKIRSNIVCAESLSQAASDLNLGEYMLLGKGEIVTGGRKRKSNLANAFEAVMGAV 119

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LD   +     V    ++    +      +D KTELQE          EY +    GP+
Sbjct: 120 FLDSDYDTTKKVVLGTLEKNIELALSGGLIKDYKTELQEQIQKHSDNAIEYVLEKSEGPE 179

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           H+  F + +  +G+  ++G   SK+ AEQ AA   L +
Sbjct: 180 HNKTFFIDLTFNGVVVSKGTGKSKKEAEQNAAKNYLFK 217


>gi|218530503|ref|YP_002421319.1| ribonuclease III [Methylobacterium chloromethanicum CM4]
 gi|218522806|gb|ACK83391.1| Ribonuclease III [Methylobacterium chloromethanicum CM4]
          Length = 256

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 91/222 (40%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63
            + LE RIG+ FA+ +LL  ALTH S +       SY+RLEFLGDR+LGL ++  L+   
Sbjct: 24  LAVLEARIGHVFADPTLLPLALTHVSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKAL 83

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A+EGELS R   LV  ETC+ VA   ++   + +     +       +I ADV E+++
Sbjct: 84  PGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIRTGGRRNQTILADVCEAIL 143

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++LD G E     V + ++     +    RDAK+ LQEWA A+    P Y+V  RSGP
Sbjct: 144 GAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSGP 203

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           DH P F +   + G+ P  G   SKR AEQ AA  VL REGI
Sbjct: 204 DHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245


>gi|119774017|ref|YP_926757.1| ribonuclease III [Shewanella amazonensis SB2B]
 gi|189043345|sp|A1S3Y1|RNC_SHEAM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|119766517|gb|ABL99087.1| RNAse III [Shewanella amazonensis SB2B]
          Length = 226

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 86/228 (37%), Positives = 126/228 (55%), Gaps = 7/228 (3%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     L + +GY F++  LLE+ALTH S S+   +  ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNLPRLCRTLGYEFSDIRLLEQALTHRSASN---QHNERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F+ F  A EG+LS    +LV  +T + +A+E  L  ++ +     K       SI AD V
Sbjct: 58  FHQFPKATEGDLSRMRATLVRGDTLAVIAKEFKLGDYLNLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  +E   + +  +++ R         ++DAKT LQE+        PEY+V
Sbjct: 118 EAIIGAVYLDADLETCRSLLLGWYETRLADIKPGVGQKDAKTLLQEYLQGMKKPLPEYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
           T   G  HD  FTV   ++ LA A  G+  S+R AEQ+AAA+VL+   
Sbjct: 178 TQVEGEAHDQTFTVECRVTDLADAVVGVGSSRRKAEQMAAAQVLELLN 225


>gi|149200057|ref|ZP_01877082.1| ribonuclease III [Lentisphaera araneosa HTCC2155]
 gi|149136815|gb|EDM25243.1| ribonuclease III [Lentisphaera araneosa HTCC2155]
          Length = 232

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 5/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTL 58
            ++ +  LE  +   F   +LL +ALTH S    S       +RLEFLGD ++ L++S  
Sbjct: 1   MSISFKVLEDNLKCKFNQPTLLREALTHRSYKFESKEPLNDNQRLEFLGDAVIELIVSRY 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF+ +  A EG+L+    +LV      + A+ + L  ++ +     K   +   S  +D 
Sbjct: 61  LFDRYPDAPEGDLTKYRAALVKESALFECAKSIKLGKYLLLGKSELKSQGNERPSNLSDA 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYK 176
            E+L+AA+YLD G E A +F     ++   +       ++ K  LQE      G  P+Y 
Sbjct: 121 YEALMAAIYLDQGYETAQSFHINILEKLWDEPADLLLVQNPKGTLQELTQKNHGSPPKYI 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              ++GP+HDP + V   ++    ++G   + +AA++ AA + +
Sbjct: 181 TISKTGPEHDPLYKVECILNKELISKGQGKTLKAAQENAARKAI 224


>gi|15605018|ref|NP_219802.1| ribonuclease III [Chlamydia trachomatis D/UW-3/CX]
 gi|76789019|ref|YP_328105.1| ribonuclease III [Chlamydia trachomatis A/HAR-13]
 gi|237802720|ref|YP_002887914.1| ribonuclease III [Chlamydia trachomatis B/Jali20/OT]
 gi|237804642|ref|YP_002888796.1| ribonuclease III [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311099|ref|ZP_05353669.1| ribonuclease III [Chlamydia trachomatis 6276]
 gi|255317400|ref|ZP_05358646.1| ribonuclease III [Chlamydia trachomatis 6276s]
 gi|7531193|sp|O84299|RNC_CHLTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101618|sp|Q3KM65|RNC_CHLTA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|3328712|gb|AAC67890.1| Ribonuclease III [Chlamydia trachomatis D/UW-3/CX]
 gi|76167549|gb|AAX50557.1| ribonuclease III [Chlamydia trachomatis A/HAR-13]
 gi|231272942|emb|CAX09853.1| ribonuclease III [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273954|emb|CAX10746.1| ribonuclease III [Chlamydia trachomatis B/Jali20/OT]
 gi|296435814|gb|ADH17988.1| ribonuclease III [Chlamydia trachomatis G/9768]
 gi|296436739|gb|ADH18909.1| ribonuclease III [Chlamydia trachomatis G/11222]
 gi|296437674|gb|ADH19835.1| ribonuclease III [Chlamydia trachomatis G/11074]
 gi|297140173|gb|ADH96931.1| ribonuclease III [Chlamydia trachomatis G/9301]
 gi|297748426|gb|ADI50972.1| Ribonuclease III [Chlamydia trachomatis D-EC]
 gi|297749306|gb|ADI51984.1| Ribonuclease III [Chlamydia trachomatis D-LC]
          Length = 231

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 65/220 (29%), Positives = 109/220 (49%), Gaps = 3/220 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLF 60
           +    +E ++ + F++  LL  ALTH S  + +   +E  ERLEFLGD +LGL+++  LF
Sbjct: 5   VDIQAIESKLNFTFSHPRLLITALTHPSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHLF 64

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +  EG LS    +LV+AE C +  ++L L   + +    +        S  A+++E
Sbjct: 65  LLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLLE 124

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +++ A+YLDGG+  A   +      +         + K  LQ++      V P YK    
Sbjct: 125 AILGAVYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALPW 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              D  P + V V ++G    +G   SK+ AE++AA + L
Sbjct: 185 KSEDGSPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224


>gi|259507587|ref|ZP_05750487.1| ribonuclease III [Corynebacterium efficiens YS-314]
 gi|90101620|sp|Q8FP16|RNC_COREF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|259164766|gb|EEW49320.1| ribonuclease III [Corynebacterium efficiens YS-314]
          Length = 247

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 106/225 (47%), Gaps = 4/225 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
            A+ ++ L +R+G    +R LL  ALTH S ++      + ERLEFLGD +LGL ++  L
Sbjct: 19  DAVNHADLLERLGVDI-DRDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLAVANRL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + S+ E ++S    S+VS    + +ARE++L  FI +             SI AD  
Sbjct: 78  YELYPSSPESDISKMRASIVSRYGLADIAREINLGEFILLGKGELLTEGRSKDSILADTT 137

Query: 120 ESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+L+ A++   G EVA   V   +  +    S K          +   A+         T
Sbjct: 138 EALLGAIFRQHGYEVARDVVLTLFHHKINHASAKGIHQDWKTTLQEELAQRKKPMVEYQT 197

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GPDHD  FT VV +  +   +G   +K+ AEQ AA +   + 
Sbjct: 198 TSVGPDHDLLFTAVVYLGDVEMGRGEGPNKKLAEQEAARQAFLKL 242


>gi|25028532|ref|NP_738586.1| ribonuclease III [Corynebacterium efficiens YS-314]
 gi|23493817|dbj|BAC18786.1| putative ribonuclease III [Corynebacterium efficiens YS-314]
          Length = 255

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 106/225 (47%), Gaps = 4/225 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
            A+ ++ L +R+G    +R LL  ALTH S ++      + ERLEFLGD +LGL ++  L
Sbjct: 27  DAVNHADLLERLGVDI-DRDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLAVANRL 85

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + S+ E ++S    S+VS    + +ARE++L  FI +             SI AD  
Sbjct: 86  YELYPSSPESDISKMRASIVSRYGLADIAREINLGEFILLGKGELLTEGRSKDSILADTT 145

Query: 120 ESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+L+ A++   G EVA   V   +  +    S K          +   A+         T
Sbjct: 146 EALLGAIFRQHGYEVARDVVLTLFHHKINHASAKGIHQDWKTTLQEELAQRKKPMVEYQT 205

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GPDHD  FT VV +  +   +G   +K+ AEQ AA +   + 
Sbjct: 206 TSVGPDHDLLFTAVVYLGDVEMGRGEGPNKKLAEQEAARQAFLKL 250


>gi|256821980|ref|YP_003145943.1| ribonuclease III [Kangiella koreensis DSM 16069]
 gi|256795519|gb|ACV26175.1| ribonuclease III [Kangiella koreensis DSM 16069]
          Length = 229

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 1   MSALRY--STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           MS  +     L  R+GY F++ SLL+ ALTH S ++   +  ERLEFLGD ILG++I+  
Sbjct: 1   MSQKKLLIERLCNRLGYQFSDPSLLKLALTHRSGAN---KHNERLEFLGDAILGMVIAEY 57

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF H   A EG+L+    SLV  +T +++A+E++L   + +     K       SI AD 
Sbjct: 58  LFTHLKKADEGQLTRLRASLVKGKTLAEIAKEIELGECLYLGEGELKSGGFRRASILADA 117

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYK 176
           +E++I A+Y D G EVA T +   +++R          +D KTELQEW  ++    P+Y+
Sbjct: 118 LEAIIGAVYQDSGFEVAKTIILTLYQKRLQNIDLKAVHKDPKTELQEWLQSRKLPLPDYE 177

Query: 177 VTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220
           +   +G  H   F V   ++       G   S+R AEQ AA + L
Sbjct: 178 LLKVTGDPHKQTFDVACILAEKKVRTHGSGSSRRNAEQQAAEKAL 222


>gi|15595050|ref|NP_212839.1| ribonuclease III [Borrelia burgdorferi B31]
 gi|7531188|sp|O51648|RNC_BORBU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|2688625|gb|AAC67040.1| ribonuclease III (rnc) [Borrelia burgdorferi B31]
          Length = 246

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59
             + S   + +   F+N  LL  AL HSS S+   +   + ERLEFLGD +L L+I+  L
Sbjct: 16  KSQLSKFLENLSIDFSNFDLLNTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHL 75

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EGELS   + +VS ++ S +ARE++L S+I +      +       I AD +
Sbjct: 76  YKTYPNKSEGELSKARSYIVSEDSLSNIAREINLGSYILLGRGEESNDGRNKKGILADAI 135

Query: 120 ESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + A+YLD G   A  FV        R + +    +D K+ LQE+   K+ ++P YK+
Sbjct: 136 EAFVGAIYLDSGFSRATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 195

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDHD  F V + +     + G   SK+ AE  AA   LK  
Sbjct: 196 DKEIGPDHDKVFCVELYVGENFISNGKGKSKKEAEMRAAEVALKAM 241


>gi|328957311|ref|YP_004374697.1| ribonuclease III [Carnobacterium sp. 17-4]
 gi|328673635|gb|AEB29681.1| ribonuclease III [Carnobacterium sp. 17-4]
          Length = 245

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 110/228 (48%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M     + L+ +    F + S LE+A THSS  + ++       ER+EFLGD +L L +S
Sbjct: 15  MDDAFLTQLKTKFDLVFHDLSYLEEAFTHSSYVNEHRNLELKDNERIEFLGDAVLELTVS 74

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  + +  EG+L+    ++V   + SQ A+E +   FIR+     +       ++  
Sbjct: 75  RFLYELYPNLPEGKLTRLRATIVCEASLSQFAKEYEFDQFIRLGRGEERMNGRKRPALLC 134

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ ES I ALYLD GI+   +F+D+    +          D KT LQE+   K  +  +Y
Sbjct: 135 DLFESFIGALYLDQGIDSVLSFLDQTIFPKIKSGAFSHVMDHKTNLQEFLQQKGEIGIDY 194

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++    GP H   F V V   G    QG   +K+AAEQVAA   L   
Sbjct: 195 QLVDEIGPAHQKAFVVEVLAEGQVLGQGQGKTKKAAEQVAAENALLAL 242


>gi|89053013|ref|YP_508464.1| ribonuclease III [Jannaschia sp. CCS1]
 gi|122499604|sp|Q28V23|RNC_JANSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|88862562|gb|ABD53439.1| RNAse III [Jannaschia sp. CCS1]
          Length = 227

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 91/224 (40%), Positives = 128/224 (57%), Gaps = 1/224 (0%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M   R  +    R+GY F + +LL +ALTHSS+S   +   +RLEFLGDR+LGL+++  +
Sbjct: 1   MKPARELTAFMDRLGYVFEDPALLARALTHSSLSSPTRGDNQRLEFLGDRVLGLVMAEAV 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                 AKEG L+ RFN+LV  E C+ VAR++DL + +R+             ++  D +
Sbjct: 61  LAADTDAKEGTLAPRFNALVRKEACADVARQIDLGAAMRLGKSEMSAGGRRRMALLGDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+YLDGG   A   V + W +R     +  RDAKT LQEWA A+    P Y    
Sbjct: 121 EAVIAAVYLDGGFASARDLVLRLWSERVQSVEEDARDAKTALQEWAQARGMAPPTYTEVA 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RSGPDH P F V V +S    A+    +KR AEQ AA ++L + 
Sbjct: 181 RSGPDHAPVFRVRVTLSSGENAEAQAKAKRQAEQQAAKDLLAQL 224


>gi|148553136|ref|YP_001260718.1| RNAse III [Sphingomonas wittichii RW1]
 gi|148498326|gb|ABQ66580.1| RNAse III [Sphingomonas wittichii RW1]
          Length = 234

 Score =  138 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 90/224 (40%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M+       +   +G+   + +L E+ALTH S        YERLEFLGDR+LGL+    L
Sbjct: 13  MNDTALRAWIADTLGHEPRDLALFERALTHGSYG---PNHYERLEFLGDRVLGLVAGAWL 69

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F    EG+LS R N++VS ETC+ V R + +A+ +++    R D      ++  DVV
Sbjct: 70  FELFPDEPEGKLSRRLNAIVSRETCADVGRAIGVATHMKLGKQARDDGAVQSDNVLGDVV 129

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+LI ALYL+GG++ A  FV + W  RA    +  +  K+ LQEWA A     P Y +  
Sbjct: 130 EALIGALYLEGGLDAAQAFVRRAWDDRATGQAQAPKHPKSALQEWAAAHRCKPPVYTMGN 189

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RSGP H PRFTV V I G A A     SK+ AE  AA  +L++ 
Sbjct: 190 RSGPHHAPRFTVTVAIPGRAEASAEGSSKQEAETAAAKALLEKL 233


>gi|225551799|ref|ZP_03772742.1| ribonuclease III [Borrelia sp. SV1]
 gi|225371594|gb|EEH01021.1| ribonuclease III [Borrelia sp. SV1]
          Length = 245

 Score =  138 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59
             + S   + +   F+N  LL+ AL HSS S+   +   + ERLEFLGD +L L+I+  L
Sbjct: 15  KAQLSKFLENLSIDFSNFDLLDTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EGELS   + +VS ++ S +ARE++L S+I +      +       I AD +
Sbjct: 75  YKTYPNKSEGELSKARSYIVSEDSLSNIAREINLGSYILLGRGEESNDGRNKKGILADAI 134

Query: 120 ESLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + A+YLD G   A  FV        R + +    +D K+ LQE+   K+ ++P YK+
Sbjct: 135 EAFVGAIYLDSGFLRATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDHD  F V + +     + G   SK+ AE  AA   LK  
Sbjct: 195 DKEIGPDHDKVFCVELYVGENFISNGKGKSKKEAEMRAAEVALKAM 240


>gi|301154741|emb|CBW14204.1| RNase III [Haemophilus parainfluenzae T3T1]
          Length = 227

 Score =  138 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 82/231 (35%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L    LE++IGY F++   L+ ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNHLD--RLERKIGYQFSDLKNLKLALTHRSAS---TQHNERLEFLGDSILNYVIADALY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR  +L  ++ + S   K       SI AD VE
Sbjct: 56  HQFPRCNEGELSRMRATLVREPTLAIIARNFELGDYMSLGSGELKSGGFRRESILADCVE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD   + A   V  ++K     +K G  ++DAKT LQE+   K    P Y+V 
Sbjct: 116 AVIGAMALDSSFDKAADIVRSWYKTLLAEIKPGDNQKDAKTRLQEYLQGKHFALPTYEVI 175

Query: 179 FRSGPDHDPRFTVVVEISGL----APAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H   FTV   +  +            S+R AEQ AA ++LK   I
Sbjct: 176 KIEGEAHCQTFTVECTVKNVPNIDRTFIAKGSSRRKAEQAAAEQILKTLEI 226


>gi|90961602|ref|YP_535518.1| ribonuclease III [Lactobacillus salivarius UCC118]
 gi|301299302|ref|ZP_07205588.1| ribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|122449142|sp|Q1WUA0|RNC_LACS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90820796|gb|ABD99435.1| Ribonuclease III [Lactobacillus salivarius UCC118]
 gi|300214418|gb|ADJ78834.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus
           salivarius CECT 5713]
 gi|300853146|gb|EFK80744.1| ribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 232

 Score =  138 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 7/222 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLLFNH 62
           L++     F +  LL+ A TH+S  +   E       YER+EFLGD ++ L +S  ++ H
Sbjct: 9   LKRDFNITFKDVDLLDAAFTHASYVNETPERKKKLKYYERIEFLGDAVMQLCVSEYIYEH 68

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG++S    ++V A++ S+ A E     +IR+     K       S+  D+ ES 
Sbjct: 69  YPEMPEGKMSRLRAAMVRADSFSKFAIECHFNEYIRLGKGEEKGNARQRPSLLCDIFESF 128

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           I ALYLD G +    F+ K    +          D KTELQE          +Y     +
Sbjct: 129 IGALYLDQGKDEVVRFISKVIFPKLELGWFDHMMDNKTELQEVLQQNGECKIKYNEVNVT 188

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GPD++  +T+ V ++     +G   +K+AAEQ+AA + LK+ 
Sbjct: 189 GPDNERVYTMNVVVNNEVMGEGTGRTKKAAEQMAAYQALKKL 230


>gi|166155383|ref|YP_001653638.1| ribonuclease III [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|238687467|sp|B0BBS8|RNC_CHLTB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|165931371|emb|CAP06943.1| ribonuclease III [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 231

 Score =  138 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 66/220 (30%), Positives = 109/220 (49%), Gaps = 3/220 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLF 60
           +    +E ++ + F++  LL  ALTHSS  + +   +E  ERLEFLGD +LGL+++  LF
Sbjct: 5   VDIQAIESKLNFTFSHPRLLITALTHSSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHLF 64

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +  EG LS    +LV+AE C +  ++L L   + +    +        S  A++ E
Sbjct: 65  LLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLFE 124

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +++ A+YLDGG+  A   +      +         + K  LQ++      V P YK    
Sbjct: 125 AILGAVYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALPW 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              D  P + V V ++G    +G   SK+ AE++AA + L
Sbjct: 185 KSEDGSPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224


>gi|2500552|sp|Q52698|RNC_RHOCA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|1177610|emb|CAA92647.1| endoribonuclease III [Rhodobacter capsulatus]
          Length = 228

 Score =  138 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 88/224 (39%), Positives = 125/224 (55%), Gaps = 1/224 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  A   S    R+G+ F     L +ALTHSS+  + +   +RLEFLGDR+LGL ++  L
Sbjct: 1   MKVAADLSAFMDRLGHRFTTPEHLVRALTHSSLGSATRPDNQRLEFLGDRVLGLSMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F+    A EG+L+ RFN+LV  ETC+ VAR++DL + +++             ++  D +
Sbjct: 61  FHADGRASEGQLAPRFNALVRKETCAAVARDIDLGAVLKLGRSEMMSGGRRKDALLGDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+YLD G EVA   V + W  R        RD KT LQEWA A+    P Y+   
Sbjct: 121 EAVIAAVYLDAGFEVARALVLRLWAARIQSVDNDARDPKTALQEWAQARGLPPPRYETLG 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           R GPDH P+F + V ++     +    SKR AEQ AA  +L+R 
Sbjct: 181 RDGPDHAPQFRIAVVLASGETEEAQAGSKRNAEQAAAKALLERL 224


>gi|323144165|ref|ZP_08078801.1| ribonuclease III [Succinatimonas hippei YIT 12066]
 gi|322416073|gb|EFY06771.1| ribonuclease III [Succinatimonas hippei YIT 12066]
          Length = 233

 Score =  138 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 87/220 (39%), Positives = 119/220 (54%), Gaps = 8/220 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LE  IGYAF N SLLE+ALTH S         ERLEFLGD ILG++I+  L+  F  
Sbjct: 10  LHQLEITIGYAFQNLSLLEQALTHRSFG---PVHNERLEFLGDSILGMVIAKKLYAMFPH 66

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+   +SLV   T +++ARE  L + +R+     K   +   S+ AD VES+IAA
Sbjct: 67  NPEGDLTRMRSSLVRETTLAELAREFGLGNCLRLGPGELKTGGARRDSLLADAVESVIAA 126

Query: 126 LYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YLD G E            + + + +     ++D K+ LQE   ++    P+YKV   S
Sbjct: 127 MYLDSGEEFDTVRQIVLSWFHSRLKTINPKVNQKDPKSSLQELLQSQHKPLPQYKVVNIS 186

Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220
           G D+D  FTV V + G+     G   SKR AEQVAA  +L
Sbjct: 187 GTDNDQVFTVEVCVEGVSEKFSGKGSSKRRAEQVAAQHLL 226


>gi|218780584|ref|YP_002431902.1| ribonuclease III [Desulfatibacillum alkenivorans AK-01]
 gi|218761968|gb|ACL04434.1| Ribonuclease III [Desulfatibacillum alkenivorans AK-01]
          Length = 535

 Score =  138 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 111/226 (49%), Gaps = 6/226 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
               LE+ +GY F    LL +A+ HSS  + + +      ERLEFLGD +L L +S +L 
Sbjct: 305 DLGLLEEALGYNFKTPELLLEAMCHSSYVNEHPDCTWTHNERLEFLGDAVLNLAVSDMLM 364

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + +   +EG+LS    SLV+    +++AR L +   + +     +       SI AD +E
Sbjct: 365 SKYSENREGDLSRLRASLVNEGQLAEIARSLGIGQHLLLGKGEARGRGWDKNSILADSLE 424

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           ++   +Y D G   A   +         +       +D KT LQE+A +K  +TP Y++ 
Sbjct: 425 AVFGGIYSDSGYADAFKVIKNLIAPLIPEEVAVAAAQDYKTRLQEYAQSKLRITPSYELI 484

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPDH+  F     ++    +QG   SK+AAEQ AA EVL   G
Sbjct: 485 REFGPDHEKTFVAQATVNKEFTSQGKGRSKKAAEQDAAREVLILLG 530


>gi|115525028|ref|YP_781939.1| ribonuclease III [Rhodopseudomonas palustris BisA53]
 gi|115518975|gb|ABJ06959.1| RNAse III [Rhodopseudomonas palustris BisA53]
          Length = 268

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 101/217 (46%), Positives = 133/217 (61%), Gaps = 3/217 (1%)

Query: 12  RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           RIG+ F +  LL  A TH S    SHS  +SY+R+EFLGD +LGL++S +L+  F  A E
Sbjct: 49  RIGHDFKDAGLLATAFTHVSALKSSHSRADSYQRMEFLGDHVLGLVVSDMLYRAFPKADE 108

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS R   LV  ETC+ VA  L L   I++ +           S+  D+ E++I A+YL
Sbjct: 109 GELSKRLADLVRKETCADVALALGLLDGIKLGTVGAGAGARLRKSVLGDICEAVIGAVYL 168

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG   A  FV+  W +R  K  +  RD KT LQEWA  K   TP Y+   R+GPDHDP+
Sbjct: 169 DGGYPAAAKFVEANWTERMRKPTRSLRDPKTVLQEWAQGKGLPTPAYREVERTGPDHDPK 228

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           F V VE+ GL PA+G+  SKRAAE+ AA+ +L REG+
Sbjct: 229 FRVRVELPGLEPAEGIGGSKRAAEKEAASAMLAREGV 265


>gi|114770106|ref|ZP_01447644.1| Ribonuclease III [alpha proteobacterium HTCC2255]
 gi|114548943|gb|EAU51826.1| Ribonuclease III [alpha proteobacterium HTCC2255]
          Length = 226

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 91/224 (40%), Positives = 127/224 (56%), Gaps = 1/224 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +   +   KR+GY F    LL +A+THSS+S + +   +R EFLGDR+LGL IS  L
Sbjct: 1   MKPSAELTAFSKRLGYDFQKPELLIQAMTHSSLSSTTRGDNQRFEFLGDRVLGLSISDAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F+    A EG L+ RFN+LV  ETC+++A E+ L   +++             ++  D +
Sbjct: 61  FHKDSDASEGLLAPRFNALVRKETCAEIAIEIKLGEALKMGRSEMLSGGRRKIAVLGDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++I A+YLD G E+A   V + W      +    RD+KT LQEWA AK   TP+Y    
Sbjct: 121 EAVIGAVYLDAGFEIARDMVIRLWSNHIDNAAHDARDSKTILQEWAQAKKLPTPKYIEVD 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RSGPDH P FT+ V I     A+    SKRAA Q AAA++L + 
Sbjct: 181 RSGPDHAPIFTIEVSIETGQSAKAQAQSKRAASQDAAADLLGQL 224


>gi|302335832|ref|YP_003801039.1| RNAse III [Olsenella uli DSM 7084]
 gi|301319672|gb|ADK68159.1| RNAse III [Olsenella uli DSM 7084]
          Length = 242

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 111/221 (50%), Gaps = 3/221 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDS 65
            +E+ +G+ F+++ L+  A+TH S         SYERLEFLGD ILG +++T +F  F  
Sbjct: 9   AVEQIVGHHFSDQRLITSAITHPSAVEGKPVSASYERLEFLGDSILGAMVATDMFERFPG 68

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGEL+    SLVS +T S+VA  L +   I      R      M S   +V E+++ A
Sbjct: 69  MDEGELTRLKISLVSGKTLSEVAGSLGIGELIVFGESERGTGARGMHSALENVYEAIVGA 128

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LYLD G E    FV +      +          K+ LQE    +F   PEY++    GP 
Sbjct: 129 LYLDAGFEATHDFVRRTLSPHMVPELAARPLSPKSRLQEVTQREFRCAPEYRLEGEEGPA 188

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           H P FT VV + G    +G   SK+ +E  AA + L R G+
Sbjct: 189 HSPTFTTVVLVDGRRVGRGSGPSKKESESQAALDALDRLGL 229


>gi|329724352|gb|EGG60864.1| ribonuclease III [Staphylococcus epidermidis VCU144]
          Length = 249

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 5/225 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +++   K +G  F N  L ++A +HSS  + +     E  ERLEFLGD +L L +S  LF
Sbjct: 16  KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +      EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + + ALYLD G++   TF +K               D KT+ QE+ H++      Y++  
Sbjct: 136 AFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIK 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GP H   FT  V +   A A+G   +K+ +EQ AA +  K   
Sbjct: 196 EEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYKLMK 240


>gi|309809559|ref|ZP_07703417.1| ribonuclease III [Lactobacillus iners SPIN 2503V10-D]
 gi|329921162|ref|ZP_08277684.1| ribonuclease III [Lactobacillus iners SPIN 1401G]
 gi|308170231|gb|EFO72266.1| ribonuclease III [Lactobacillus iners SPIN 2503V10-D]
 gi|328934800|gb|EGG31291.1| ribonuclease III [Lactobacillus iners SPIN 1401G]
          Length = 225

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 108/226 (47%), Gaps = 4/226 (1%)

Query: 1   MSALRYS-TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57
           M +  +   L+++    F N  LLE+ALTHSS S+ +Q  ++YE+LEFLGD +L L IS 
Sbjct: 1   MVSESFKNELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+ HF +  EGEL+   +++V  E  SQ A E   +  +++     K       ++  D
Sbjct: 61  YLYRHFPNMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLED 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           V E+   AL+LD G+     F+         +             +      G       
Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYK 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              S     PRFTV + ++G   +QG+  SK+AAEQVAA+  LK  
Sbjct: 181 VIDSDEA-KPRFTVQLIVAGENISQGIGRSKKAAEQVAASVALKNI 225


>gi|119953483|ref|YP_945692.1| ribonuclease III [Borrelia turicatae 91E135]
 gi|119862254|gb|AAX18022.1| ribonuclease III [Borrelia turicatae 91E135]
          Length = 244

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 115/226 (50%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59
             + +     +   F +  LL  +L+HSS ++ + +   + ERLEFLGD +L L+I+  L
Sbjct: 14  RKKLNEFLLGLHIDFNDIDLLNMSLSHSSYANEFDQKYANNERLEFLGDSVLNLIITDYL 73

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  +    EGELS   + +VS E+ S +AREL+L ++I +      +       I AD +
Sbjct: 74  YRFYPEKSEGELSKARSYIVSEESLSSIARELNLGNYILLGRGEENNDGRNKKGILADAI 133

Query: 120 ESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + ALYLDGG    +           R + +    +D K+ LQE+   K+ ++P YK+
Sbjct: 134 EAFVGALYLDGGFLKTLDFVIELFEVHIRLMFNRGDFKDYKSLLQEYVQKKYKISPTYKL 193

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDH+  F V + ++    + G   SK+ AE +AA   LK  
Sbjct: 194 AKELGPDHNKVFCVELYVNDKFISNGKGKSKKEAEMIAAEMALKNI 239


>gi|299144133|ref|ZP_07037213.1| ribonuclease III [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518618|gb|EFI42357.1| ribonuclease III [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 233

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 6/229 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
                S L   + Y F N   +  ALTHSS  + +      S ERLEFLGD +L L+I  
Sbjct: 1   MPKNVSILLSLLEYEFKNDKYINIALTHSSYINEHNLKDTVSNERLEFLGDAVLDLIIGE 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
             +    + KEG LS   + +V+  +  ++A  + +  F+       K+  +   S  +D
Sbjct: 61  YFYYSHKNLKEGSLSKLRSKVVNENSLYKIATNISIGDFMYFGKGEIKNKGNLRESTLSD 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEY 175
            +E+LI A+Y+DGG++     + + +  R ++    +   D KT LQE          +Y
Sbjct: 121 CLEALIGAIYIDGGLDAVRKVILRLFHDRIMEVENLKSLEDYKTMLQECIQRNKMGNIKY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            +    GP +D  F   V I+ +    G   +K+++EQ+AA   L R G
Sbjct: 181 VIYDEKGPSNDKVFYSNVLINDIIIGNGYGKTKKSSEQLAAKNALIRIG 229


>gi|126173439|ref|YP_001049588.1| ribonuclease III [Shewanella baltica OS155]
 gi|160874397|ref|YP_001553713.1| ribonuclease III [Shewanella baltica OS195]
 gi|217974269|ref|YP_002359020.1| ribonuclease III [Shewanella baltica OS223]
 gi|304409362|ref|ZP_07390982.1| ribonuclease III [Shewanella baltica OS183]
 gi|307303720|ref|ZP_07583473.1| ribonuclease III [Shewanella baltica BA175]
 gi|189043346|sp|A3D1V6|RNC_SHEB5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043348|sp|A9L5N6|RNC_SHEB9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807898|sp|B8EBQ2|RNC_SHEB2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|125996644|gb|ABN60719.1| RNAse III [Shewanella baltica OS155]
 gi|160859919|gb|ABX48453.1| Ribonuclease III [Shewanella baltica OS195]
 gi|217499404|gb|ACK47597.1| Ribonuclease III [Shewanella baltica OS223]
 gi|304351880|gb|EFM16278.1| ribonuclease III [Shewanella baltica OS183]
 gi|306912618|gb|EFN43041.1| ribonuclease III [Shewanella baltica BA175]
 gi|315266632|gb|ADT93485.1| ribonuclease III [Shewanella baltica OS678]
          Length = 226

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 83/228 (36%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     L + + Y F N  LL +ALTH S ++   +  ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNLPRLCRTLSYEFKNIELLTQALTHRSAAN---KHNERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +T + +A+E  L  ++ +     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVRGDTLTIIAQEFKLGDYLYLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  +EV    + K++ +R   ++ G  ++DAKT LQE         P+Y+V
Sbjct: 118 EAIIGAVYLDSDLEVCRALLLKWYAERLAEIQPGISQKDAKTLLQEHLQGFKKPLPDYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
               G  HD  FTV   I  L+ +  G+  S+R AEQ+AAA+VL+   
Sbjct: 178 INIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAAAQVLELLK 225


>gi|259046634|ref|ZP_05737035.1| ribonuclease III [Granulicatella adiacens ATCC 49175]
 gi|259036799|gb|EEW38054.1| ribonuclease III [Granulicatella adiacens ATCC 49175]
          Length = 236

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 7/230 (3%)

Query: 1   MSALR--YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLL 54
           M  ++     L+++   +F N +LL +A+THSS ++ ++E      ER+EFLGD +L L 
Sbjct: 1   MKEIKALSKILKEKFDISFNNEALLMEAMTHSSYANEHKEMKGIYNERIEFLGDAVLELT 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           IS  LF  F   +EG+L+     +V  ++ S +A+E  L  ++ +             +I
Sbjct: 61  ISDWLFRQFPHFQEGQLTKLRAQIVCEDSLSLLAKECSLNEYLLLGKGETLSGGREKPAI 120

Query: 115 QADVVESLIAALYLDGG-IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
             DV E+ I ALYLD G  EV          +      +   D KTELQE+      V  
Sbjct: 121 LCDVFEAFIGALYLDKGVNEVQRFLNLVVIPKIKNGRYELITDFKTELQEYLQQNGPVHI 180

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            Y++    GP HD  FTV + + G         +K+AAEQ+AA   ++  
Sbjct: 181 RYELVKEEGPSHDKTFTVQLIVDGKKYKTASGKTKKAAEQMAAKLTMEEL 230


>gi|260425711|ref|ZP_05779691.1| ribonuclease III [Citreicella sp. SE45]
 gi|260423651|gb|EEX16901.1| ribonuclease III [Citreicella sp. SE45]
          Length = 227

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 91/223 (40%), Positives = 132/223 (59%), Gaps = 1/223 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +   + LE+R+G+ FA+   L +ALTHSS+S   +E  +RLEFLGDR+LGL+++  L
Sbjct: 1   MKRSAEIAALEQRLGHRFADPERLRRALTHSSMSAPGREDNQRLEFLGDRVLGLVMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
            +    A EG+L+ RFN+LV  E C++VARE+DL + +++             ++  D +
Sbjct: 61  LSEDRGASEGQLAPRFNALVRKEACAEVAREIDLGAALKLGRSEMMSGGRRKMALLGDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+YLD G   A   V + W  R  +  +  RDAKT LQEWA A+  V P Y    
Sbjct: 121 EAVIAAVYLDAGFGTAKALVLRLWGDRIARVEEDARDAKTSLQEWAQARGMVPPSYTEVA 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           R GPDH P FT+   +   A A+    SKR AEQ AA+ +L +
Sbjct: 181 REGPDHAPVFTIEARLENGAAARATAGSKRKAEQQAASGLLDK 223


>gi|259501533|ref|ZP_05744435.1| ribonuclease III [Lactobacillus iners DSM 13335]
 gi|302191494|ref|ZP_07267748.1| ribonuclease III [Lactobacillus iners AB-1]
 gi|309804216|ref|ZP_07698293.1| ribonuclease III [Lactobacillus iners LactinV 11V1-d]
 gi|309806878|ref|ZP_07700865.1| ribonuclease III [Lactobacillus iners LactinV 03V1-b]
 gi|309808658|ref|ZP_07702550.1| ribonuclease III [Lactobacillus iners LactinV 01V1-a]
 gi|325913482|ref|ZP_08175848.1| ribonuclease III [Lactobacillus iners UPII 60-B]
 gi|259167051|gb|EEW51546.1| ribonuclease III [Lactobacillus iners DSM 13335]
 gi|308163619|gb|EFO65889.1| ribonuclease III [Lactobacillus iners LactinV 11V1-d]
 gi|308166744|gb|EFO68936.1| ribonuclease III [Lactobacillus iners LactinV 03V1-b]
 gi|308168132|gb|EFO70258.1| ribonuclease III [Lactobacillus iners LactinV 01V1-a]
 gi|325477251|gb|EGC80397.1| ribonuclease III [Lactobacillus iners UPII 60-B]
          Length = 225

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 108/226 (47%), Gaps = 4/226 (1%)

Query: 1   MSALRYS-TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57
           M +  +   L+++    F N  LLE+ALTHSS S+ +Q  ++YE+LEFLGD +L L IS 
Sbjct: 1   MVSESFKNELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+ HF +  EGEL+   +++V  E  SQ A E   +  +++     K       ++  D
Sbjct: 61  YLYRHFPNMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLED 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           V E+   AL+LD G+     F+         +             +      G       
Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYK 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              S     PRFTV + ++G   +QG+  SK+AAEQVAA+  LK  
Sbjct: 181 VIDSDEA-QPRFTVQLIVAGENISQGIGRSKKAAEQVAASVALKNI 225


>gi|322379758|ref|ZP_08054068.1| ribonuclease III [Helicobacter suis HS5]
 gi|321147829|gb|EFX42419.1| ribonuclease III [Helicobacter suis HS5]
          Length = 224

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           + TL+KR+GY F +  LL++ALTH S      ++ ERLEFLGD +L L+++ +LF  F  
Sbjct: 2   FETLQKRLGYVFKDPLLLQQALTHRS--TKAHKNNERLEFLGDAVLDLVVAEILFTRFTD 59

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG+LS    SLV+ +   ++A  L+L   I +S     +      SI +   E+L+ A
Sbjct: 60  LQEGDLSKMRASLVNEKAFFKLALSLNLQDHILISQAEANNNGHTKPSILSSAFEALMGA 119

Query: 126 LYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+E+    +          L       D K+ LQE   A+F   P Y +   SGP
Sbjct: 120 IYLESGLEIIKNLIQDLLDMAYPNLSPKTLFMDYKSALQELTQARFKAIPIYALKSESGP 179

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH  +F + + I           SK+ AEQ+ A    K+ 
Sbjct: 180 DHAKQFEMQIFILNKLYGTCKAGSKKQAEQLCAQVAYKQL 219


>gi|158423628|ref|YP_001524920.1| ribonuclease III [Azorhizobium caulinodans ORS 571]
 gi|226735365|sp|A8I3B5|RNC_AZOC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|158330517|dbj|BAF88002.1| ribonuclease III [Azorhizobium caulinodans ORS 571]
          Length = 235

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 96/226 (42%), Positives = 138/226 (61%), Gaps = 3/226 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61
            ++ LE R+G++FA+RS L  ALTH S          SY+RLEFLGD +LG ++S +L+ 
Sbjct: 6   DFAALEARLGHSFADRSHLVLALTHISSVKGQAVRVRSYQRLEFLGDHVLGSVVSHMLYA 65

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EGELS R   LV  E C++VA+++ L  ++R+     +       +I ADV E+
Sbjct: 66  AFPKAEEGELSRRLAELVREEACAEVAQDMGLGPYLRLGPGEAQSGARQRRAILADVAEA 125

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           ++AA+YLDGG E A   V+++W+ R     +  RD KT LQEWA A+    P Y+   RS
Sbjct: 126 VVAAVYLDGGYEAASALVERFWRGRLEAPRRPLRDPKTVLQEWAQARGLPPPVYRDVERS 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           GPDH PRF V V++ GL  A+    SK+ A++ AA+  L REG+ T
Sbjct: 186 GPDHAPRFRVAVDLPGLECAEAEGGSKQTAQKAAASAFLAREGVVT 231


>gi|227890689|ref|ZP_04008494.1| ribonuclease III [Lactobacillus salivarius ATCC 11741]
 gi|227867627|gb|EEJ75048.1| ribonuclease III [Lactobacillus salivarius ATCC 11741]
          Length = 232

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 109/229 (47%), Gaps = 11/229 (4%)

Query: 6   YSTLEKRIG----YAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLI 55
              L++ +       F +  LL+ A TH+S  +   E       YER+EFLGD ++ L +
Sbjct: 2   IEGLQEMLKRDFDITFKDVDLLDAAFTHASYVNETPERKKKLKYYERIEFLGDAVMQLCV 61

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  ++ H+    EG++S    ++V A++ S+ A E     +IR+     K       S+ 
Sbjct: 62  SEYIYEHYPEMPEGKMSRLRAAMVRADSFSKFAIECHFNEYIRLGKGEEKGNARQRPSLL 121

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPE 174
            D+ ES I ALYLD G +    F+ K    +          D KTELQE          +
Sbjct: 122 CDIFESFIGALYLDQGKDEVVRFISKVIFPKLELGWFDHMMDNKTELQEVLQQNGECKIK 181

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y     +GPD++  +T+ V ++     +G   +K+AAEQ+AA + LK+ 
Sbjct: 182 YNEVNVTGPDNERVYTMNVVVNNEVMGEGTGRTKKAAEQMAAYQALKKL 230


>gi|70726682|ref|YP_253596.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435]
 gi|90101647|sp|Q4L5T5|RNC_STAHJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|68447406|dbj|BAE04990.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435]
          Length = 245

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 5/225 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +++     +G+ ++N  L ++A +HSS  + +        ERLEFLGD +L L +S  LF
Sbjct: 16  QFAKKMNELGFTYSNIDLYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +      EG L+    ++V   +    A +++L   I +     K       S+ +D  E
Sbjct: 76  DKHPDLPEGNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKTGGRTRPSLVSDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + + ALYLD G++V   F +K               D KT+ QE+ H++      Y++  
Sbjct: 136 AFVGALYLDQGLDVVWQFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNRGDVTYRLIK 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GP H   FT  V +   A A G   +K+ +EQ AA     +  
Sbjct: 196 EEGPAHHRLFTSEVILENEAVATGQGKTKKESEQKAAESAYSKLK 240


>gi|313683639|ref|YP_004061377.1| RNAase iii [Sulfuricurvum kujiense DSM 16994]
 gi|313156499|gb|ADR35177.1| RNAse III [Sulfuricurvum kujiense DSM 16994]
          Length = 226

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/212 (33%), Positives = 103/212 (48%), Gaps = 6/212 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       L++R+GY F N+ LL +ALTH S    Y  + ERLEFLGD +L L++   L+
Sbjct: 1   MD--NLQALQERLGYTFQNKELLIEALTHKSYKQPY--NNERLEFLGDAVLDLIVGEYLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+LS    SLV+    + +A  L+L   I +S+    +     +S+ ++  E
Sbjct: 57  KKFRGYDEGKLSKMRASLVNEGGFTSLANHLNLGEHIFLSNAEENNSGRTKSSLLSNAFE 116

Query: 121 SLIAALYLDGG--IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+YL+ G       T          +      +D KT LQE   A +G TPEY++ 
Sbjct: 117 AVMGAMYLETGLGKVQEITVSLLEHVHPDISLDSLFKDYKTSLQELTQAHYGTTPEYQLI 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
              GPDH   F V V I G   A     SK+ 
Sbjct: 177 AAHGPDHKKEFEVAVIIDGKRYASAQGKSKKQ 208


>gi|325577735|ref|ZP_08148010.1| ribonuclease III [Haemophilus parainfluenzae ATCC 33392]
 gi|325160480|gb|EGC72606.1| ribonuclease III [Haemophilus parainfluenzae ATCC 33392]
          Length = 227

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 82/231 (35%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L    LE++IGY F++   L+ ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNHLD--RLERKIGYQFSDLKNLKLALTHRSAS---TQHNERLEFLGDSILNYVIADALY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR  +L  ++ + S   K       SI AD VE
Sbjct: 56  HQFPRCNEGELSRMRATLVREPTLAMLARNFELGDYMSLGSGELKSGGFRRESILADCVE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD   + A   V  ++K     +K G  ++DAKT LQE+   K    P Y+V 
Sbjct: 116 AVIGAMALDSSFDKAADIVRSWYKTLLAEIKPGDNQKDAKTRLQEYLQGKHFALPTYEVI 175

Query: 179 FRSGPDHDPRFTVVVEISGL----APAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H   FTV   +  +            S+R AEQ AA ++LK   I
Sbjct: 176 KIEGEAHCQTFTVECTVKNVPNIDRTFIAKGSSRRKAEQAAAEQILKILEI 226


>gi|78223520|ref|YP_385267.1| ribonuclease III:double-stranded RNA binding [Geobacter
           metallireducens GS-15]
 gi|90101627|sp|Q39T82|RNC_GEOMG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78194775|gb|ABB32542.1| RNAse III [Geobacter metallireducens GS-15]
          Length = 246

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFN 61
           + LE  IGY F NR  L +ALTH S  +  +        ERLEFLGD +LGLL+  +LF 
Sbjct: 17  TELEAGIGYRFVNRQFLAEALTHRSWVNERRGEEGIRDNERLEFLGDAVLGLLVGKMLFA 76

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  ++EG L+    SLV  ET + +A    L   + +     +       S+ A+  E+
Sbjct: 77  RFPQSREGVLARMKASLVGEETLAALASARGLGRHLLLGRGEERSGGRERRSLLANTYEA 136

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+AA+YLDGG+      V++ +      + SG   RD KTE QE    +FG  P Y++  
Sbjct: 137 LLAAVYLDGGLGPVERIVEQDFSPLLAGIASGATGRDFKTEFQEMVQTRFGTAPTYELIA 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP HD RFTV+  ++G    +G   SK+ AEQ AA +VL R
Sbjct: 197 TDGPPHDRRFTVIAMVAGKRMGEGAGRSKKEAEQAAARQVLAR 239


>gi|329942692|ref|ZP_08291471.1| ribonuclease III [Chlamydophila psittaci Cal10]
 gi|332287287|ref|YP_004422188.1| ribonuclease III [Chlamydophila psittaci 6BC]
 gi|313847871|emb|CBY16866.1| ribonuclease III [Chlamydophila psittaci RD1]
 gi|325506653|gb|ADZ18291.1| ribonuclease III [Chlamydophila psittaci 6BC]
 gi|328814952|gb|EGF84941.1| ribonuclease III [Chlamydophila psittaci Cal10]
 gi|328914533|gb|AEB55366.1| ribonuclease III [Chlamydophila psittaci 6BC]
          Length = 237

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 4/224 (1%)

Query: 1   MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLIS 56
           M+  +    +E ++ + F    LL  ALTH S  +      E  ERLEFLGD +L L+++
Sbjct: 1   MNNLINIKEVEAKLNFTFTQPKLLVTALTHPSYRNETATITEDSERLEFLGDAVLCLIVT 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F S  EG LS    +L++A +C Q    L L  ++ +    R       TS  A
Sbjct: 61  EHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLIGKGERIQNERGRTSAYA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           ++ E+++ A+YLDGG+  A          +         + K  LQ+         P Y+
Sbjct: 121 NLFEAILGAVYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKHLRTLPVYQ 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
               + P     + + V ++     +G   SK+ AE++AA + L
Sbjct: 181 CESWTSPQGASGYHIRVIVNNEVWGEGFALSKKEAEKLAAQQAL 224


>gi|240146505|ref|ZP_04745106.1| ribonuclease III [Roseburia intestinalis L1-82]
 gi|257201361|gb|EEU99645.1| ribonuclease III [Roseburia intestinalis L1-82]
 gi|291535139|emb|CBL08251.1| RNAse III [Roseburia intestinalis M50/1]
          Length = 228

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/209 (33%), Positives = 106/209 (50%), Gaps = 5/209 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +   L+ RIGY F    LL +ALTHSS ++          ERLEFLGD +L ++ S  L+
Sbjct: 3   KLQELQNRIGYTFEKEGLLRQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSDFLY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++    EG+L+    S+V   T +   RE+DL  ++ +     +       SI +D +E
Sbjct: 63  RNYPDLPEGDLTKLRASIVCEPTLALCTREMDLGDYLLLGKGENQTGGRKRKSILSDALE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           S+I A+YLDGG E A  F+ K+     ++  K   D+KT LQE     +  +  Y++   
Sbjct: 123 SVIGAIYLDGGFEPAKKFIHKFIL-TDIEHKKLFYDSKTILQEVVQGNYKESLHYELISE 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GPDHD +F+V   I       G   +K+
Sbjct: 182 EGPDHDKQFSVEARIGDKVIGAGTGHTKK 210


>gi|169795096|ref|YP_001712889.1| ribonuclease III [Acinetobacter baumannii AYE]
 gi|239501066|ref|ZP_04660376.1| ribonuclease III [Acinetobacter baumannii AB900]
 gi|260556582|ref|ZP_05828800.1| ribonuclease III [Acinetobacter baumannii ATCC 19606]
 gi|301345824|ref|ZP_07226565.1| ribonuclease III [Acinetobacter baumannii AB056]
 gi|301512403|ref|ZP_07237640.1| ribonuclease III [Acinetobacter baumannii AB058]
 gi|301594764|ref|ZP_07239772.1| ribonuclease III [Acinetobacter baumannii AB059]
 gi|332851055|ref|ZP_08433164.1| ribonuclease III [Acinetobacter baumannii 6013150]
 gi|332869696|ref|ZP_08438884.1| ribonuclease III [Acinetobacter baumannii 6013113]
 gi|332875945|ref|ZP_08443731.1| ribonuclease III [Acinetobacter baumannii 6014059]
 gi|238685526|sp|A3M7P2|RNC_ACIBT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238688097|sp|B0VCU0|RNC_ACIBY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|169148023|emb|CAM85886.1| ribonuclease III, ds RNA [Acinetobacter baumannii AYE]
 gi|193078016|gb|ABO12936.2| ribonuclease III [Acinetobacter baumannii ATCC 17978]
 gi|260409841|gb|EEX03141.1| ribonuclease III [Acinetobacter baumannii ATCC 19606]
 gi|332730219|gb|EGJ61544.1| ribonuclease III [Acinetobacter baumannii 6013150]
 gi|332732598|gb|EGJ63831.1| ribonuclease III [Acinetobacter baumannii 6013113]
 gi|332735811|gb|EGJ66852.1| ribonuclease III [Acinetobacter baumannii 6014059]
          Length = 230

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 114/230 (49%), Gaps = 9/230 (3%)

Query: 1   MSALRYS----TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56
           M+  ++      L  RIGY F    LL+ ALTH S+S  ++ +YERLEFLGD +LG++I+
Sbjct: 1   MTKHQFKLSDPRLLSRIGYQFKQPELLQLALTHRSVS--HKYNYERLEFLGDSLLGMIIA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L++ +    EG L+    +LV  E   ++A +L L+  + +S+   K       SI A
Sbjct: 59  NYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILA 118

Query: 117 DVVESLIAALYLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
           D VE++I A+YLD                     ++     +D K+ LQE+  A+    P
Sbjct: 119 DTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLP 178

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            Y+V    G      F V   + GL+   G   S+R AEQ AAAE+LK  
Sbjct: 179 VYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILKLL 228


>gi|332298046|ref|YP_004439968.1| Ribonuclease 3 [Treponema brennaborense DSM 12168]
 gi|332181149|gb|AEE16837.1| Ribonuclease 3 [Treponema brennaborense DSM 12168]
          Length = 256

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
           +    E+ I   F +  LL+ A  H S S+       + ERLEFLGD +LG+  +T L+ 
Sbjct: 28  QLLDFERAISVHFNDLQLLDLAFHHRSYSNEGANTRYNNERLEFLGDAVLGMATATYLYE 87

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EG+L+   + +VS  T + +A E+ + S + +             +I AD VE+
Sbjct: 88  SMLERPEGDLARIKSVVVSEMTLAPIALEIGVDSCLVLGKGEELSGGRTKKAILADAVEA 147

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A YLD G   A   V +       K    K  RD KT LQE+   K+   P Y++  
Sbjct: 148 VIGAYYLDSGYSAAEKLVLELIVPEIQKVLQNKHHRDYKTLLQEFYQKKYKECPVYELVK 207

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           R+GPDHD  F V V +  +        +K+ AEQ AA    +
Sbjct: 208 RTGPDHDRTFWVSVHLHSVTYGPASGKNKKEAEQSAARLAWE 249


>gi|225850066|ref|YP_002730300.1| ribonuclease III [Persephonella marina EX-H1]
 gi|225645108|gb|ACO03294.1| ribonuclease III [Persephonella marina EX-H1]
          Length = 249

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 8/223 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
           R   LE+++GY F +++L   ALTHSS +  Y +    YE LEFLGD +L L++S +L  
Sbjct: 12  RIKKLEQKLGYVFKDKNLPLTALTHSSFAAEYHKEIKDYEVLEFLGDAVLSLIVSEILIK 71

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A EGELS   ++++S    S++AR L L   + +S            S+  DV ES
Sbjct: 72  TFPEASEGELSQTRSAVISEAYLSRLARILGLNELVLLSRGEIAQKGMERESLLCDVFES 131

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL-----KSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +  A+Y+D   ++           +       K G   RD K+ LQ      FGV P+Y 
Sbjct: 132 VFGAVYVDCDYDIKIPREIFNRFFKDYLIESIKKGNIPRDYKSILQIMTQRLFGVVPKYS 191

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +    GP+H+  FT+   +  +    G   SK+ AE  AA + 
Sbjct: 192 MVSAEGPEHEKIFTMECSVDNVVRTFGTGKSKKEAETEAAKKA 234


>gi|227513461|ref|ZP_03943510.1| ribonuclease III [Lactobacillus buchneri ATCC 11577]
 gi|227524604|ref|ZP_03954653.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290]
 gi|227083334|gb|EEI18646.1| ribonuclease III [Lactobacillus buchneri ATCC 11577]
 gi|227088279|gb|EEI23591.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290]
          Length = 236

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/218 (33%), Positives = 109/218 (50%), Gaps = 5/218 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64
           L++       ++ LL++A T +S  + +++     YERLEFLGD +L L++S  +F  + 
Sbjct: 9   LKQDFNIHIDDQDLLDEAFTQASYVNEHRDQHLKFYERLEFLGDAVLQLIVSEYIFKRYP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G L+    ++V+ ++ S  ARE     +IR+     K       S+  D+ ES + 
Sbjct: 69  KLPQGRLTRLRAAMVNEQSFSTFARECHFNKYIRLGKGEEKAGARDRDSLLCDIFESFVG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ALYLD G +V   FV +    +          D KTELQE A A   V  +Y++    GP
Sbjct: 129 ALYLDQGKKVVEGFVQQVIFPKLDEGMFAKFFDHKTELQELAQADGPVDIDYELVDEYGP 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           D+D  F V V I       G+  SK+ AEQ AA E LK
Sbjct: 189 DNDRLFKVNVAIDDKLLGVGIGHSKKDAEQRAAQEALK 226


>gi|288575033|ref|ZP_06393390.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570774|gb|EFC92331.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 244

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 114/224 (50%), Gaps = 8/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
             S ++ R+GY+F +  LL +ALTHSS +H    +   ERLEFLGD +L L  ST LF  
Sbjct: 9   NLSLIQDRLGYSFTDIELLREALTHSSYAHESGLRSWNERLEFLGDAVLELATSTRLFRA 68

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV-CSFMTSIQADVVES 121
                EG L+     LV  E     A  L L+  +RV+  LRK      ++S+ AD +E+
Sbjct: 69  MKDMDEGGLTRLRARLVRKEALLTWAEALGLSGILRVNRGLRKKGEGCDLSSMHADAIEA 128

Query: 122 LIAALYLDGGIEV-----AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +  A+Y+DGG ++            + K   ++ G    D K+ELQ+    K    PEY+
Sbjct: 129 IFGAVYMDGGYDMAESVVNRYLDFLFEKGDYIQDGNSSIDPKSELQQILQIKGEPLPEYR 188

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  R GP H P F V + +SG+  + G   S + AE  AA + L
Sbjct: 189 IMSREGPPHSPSFEVELYVSGVLLSSGRGRSIKEAEVQAALDGL 232


>gi|116331646|ref|YP_801364.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|122280610|sp|Q04R64|RNC_LEPBJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116125335|gb|ABJ76606.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 247

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 112/223 (50%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62
           +  L K+IG  F+       A  HSS  +   E     ERLEFLGD +LGL+ +  LF  
Sbjct: 21  FKKLSKKIGIKFSKIEYYNTAFIHSSYKNENPEILEDNERLEFLGDSVLGLVAARSLFQK 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  A EGELS   + +VS    + +A +L+L  ++ +    +         I A++ ESL
Sbjct: 81  YPKASEGELSRIKSKIVSTPILNSIAEKLNLGEYLLLGKGEKNSQGKGRRKIAANLFESL 140

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YLD G EVA  F+ ++  +        +  RD KT+LQE++   F   P Y++   
Sbjct: 141 VGAIYLDRGFEVAEKFIVQHLLEFAENPDMEESVRDYKTQLQEYSQKHFKTLPVYRMKGE 200

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGPDH   F V V I     A G   SK+ AEQ AA E+  R 
Sbjct: 201 SGPDHSKTFQVSVRIRDQWEASGYGASKKIAEQNAAKELYIRI 243


>gi|257093153|ref|YP_003166794.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045677|gb|ACV34865.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 223

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 115/221 (52%), Gaps = 6/221 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+ +GY F +R+LL+ ALTH S S       ERLEFLGD IL  +I+  LF  F + 
Sbjct: 4   SRLERGLGYTFRDRALLQTALTHRSYS---SPHNERLEFLGDAILNAVIARSLFERFPTL 60

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS     LV  +   Q A  L L  F+R+    +K       SI AD +E+L  AL
Sbjct: 61  PEGDLSRLRAQLVRQDGLHQQALALSLGDFLRLGEGEQKSGGQQRPSILADGLEALFGAL 120

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LD G E AG  +++ ++    +    +  +DAKT LQE+   +    P+Y +T   G  
Sbjct: 121 WLDAGFEAAGEVINRLYESMLKQLIPGQGTKDAKTRLQEYLQGRRLALPQYALTGAEGEA 180

Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224
           H   FTV   I  L    +G   ++RAAEQ+AA   L   G
Sbjct: 181 HAQHFTVTCVIDALRIRTEGSGSNRRAAEQIAAERALDTLG 221


>gi|225374436|ref|ZP_03751657.1| hypothetical protein ROSEINA2194_00051 [Roseburia inulinivorans DSM
           16841]
 gi|225213674|gb|EEG96028.1| hypothetical protein ROSEINA2194_00051 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/209 (33%), Positives = 104/209 (49%), Gaps = 5/209 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
            +  L+ +IGY F    LL +ALTHSS ++          ERLEFLGD +L ++ S  L+
Sbjct: 3   NFLELQDKIGYEFKQEKLLRQALTHSSFANEKHLRKHSDNERLEFLGDAVLEIVSSDFLY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EG+L+    SLV   T +   RE++L  ++ +             SI +D +E
Sbjct: 63  KAYPDKSEGDLTKLRASLVCEPTLAICTREMELGKYLFLGKGENLTGGRNRNSILSDALE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++I A+YLDGG E A TF+ K+     ++  K   D KT LQE     +     Y++   
Sbjct: 123 AVIGAIYLDGGFEHAKTFIHKFIL-TDIEHKKLFYDCKTSLQEVVQGHYEEELNYRLISE 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GPDHD RF+V   I       G+  +K+
Sbjct: 182 EGPDHDKRFSVEARIGERVIGTGIGHTKK 210


>gi|329850746|ref|ZP_08265591.1| ribonuclease III [Asticcacaulis biprosthecum C19]
 gi|328841061|gb|EGF90632.1| ribonuclease III [Asticcacaulis biprosthecum C19]
          Length = 236

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 88/222 (39%), Positives = 130/222 (58%), Gaps = 3/222 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFN 61
           +   T++ R+GY F ++ LLE ALTH+S++   +     ERLEFLGDR+LGL+I+  L +
Sbjct: 11  IAIETVQDRLGYRFRDKQLLEVALTHASVAEGARRIADNERLEFLGDRVLGLMIAEALMD 70

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +F  A+EGELS RF++LVS E C+ +AR+L L   +R+++   K       +I  D  E+
Sbjct: 71  NFPEAEEGELSRRFHALVSREACADIARQLSLGEAVRLAAGETKSGGRSNPTILGDACEA 130

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           L+AA+Y+DGG +         W+Q         R + K+ LQEWA A     P Y +  R
Sbjct: 131 LMAAVYVDGGYDAVVKSFAPLWQQLLLDSGNASRSNPKSFLQEWAVANAKRPPAYNLIER 190

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            GPDH P FT+ V I GL P      S++ AE+ AA  +++R
Sbjct: 191 RGPDHAPVFTMEVVIDGLQPQSATGKSRQEAEKTAALALIER 232


>gi|323340721|ref|ZP_08080973.1| ribonuclease III [Lactobacillus ruminis ATCC 25644]
 gi|323091844|gb|EFZ34464.1| ribonuclease III [Lactobacillus ruminis ATCC 25644]
          Length = 230

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 108/220 (49%), Gaps = 5/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
             L+   G    N  L ++A TH+S  + + +     YER+EFLGD ++ L +S  LF  
Sbjct: 7   KKLKDDYGINVKNTDLFDEAFTHASYVNEHPKEHLKYYERIEFLGDAVMQLCVSEYLFKR 66

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           + S  EG+LS    ++V  ++ S+ A+E     +IR+     K      +S+  D+ ES 
Sbjct: 67  YPSLPEGKLSRLRAAMVCEDSFSKFAKECHFDEYIRLGKGEEKADARNRSSLLCDIFESF 126

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           I ALYLD G +    F+      +  +       D KTELQE+         EYK+    
Sbjct: 127 IGALYLDQGKDKVVEFISAVVFPKLDMGWFDHLLDHKTELQEYLQQNGDCKIEYKMLDEK 186

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GPD+D  +T+ V   G    +G+  SK+ AEQ AA + LK
Sbjct: 187 GPDNDKTYTMAVYADGKKIGEGVGSSKKNAEQAAAYQALK 226


>gi|195952887|ref|YP_002121177.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1]
 gi|226741373|sp|B4U7T8|RNC_HYDS0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|195932499|gb|ACG57199.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1]
          Length = 232

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 113/226 (50%), Gaps = 9/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M +  +  LE++IGY F +++L++KA TH S S    E+YE LEFLGD ++  +   +L 
Sbjct: 1   MDS--FELLEEKIGYRFKDKNLVKKAFTHISFSK-SSENYEVLEFLGDALVNFMTVNILV 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F + KEGELS   + L+S E  + +A+ L+   +I +S        +   SI  DV E
Sbjct: 58  EAFPNKKEGELSQLKSFLISEEFLASLAKSLNFEKYILISKGEELKGSNKNPSILCDVFE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR-----ALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           +  AA+Y+D G +   T        +      + S   ++D KT LQE    K+   P Y
Sbjct: 118 AFWAAIYIDSGYDCKLTKSLFEHHFKSQILEMVNSNSLKQDYKTALQEITQKKWKERPIY 177

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V    GP+H   FTV      L    G   SK+ AEQ AA  +L+
Sbjct: 178 NVISVEGPEHRKTFTVECLFKDLR-TTGKGNSKKYAEQEAAKNMLQ 222


>gi|304436759|ref|ZP_07396727.1| ribonuclease III [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370239|gb|EFM23896.1| ribonuclease III [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 238

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNH 62
              L   +G  FA+ S L++ALTH S ++    +    ERLEFLGD +L L IST L++ 
Sbjct: 13  LVRLSASLGVDFADLSTLDEALTHPSYANEARGHAAHNERLEFLGDAVLELAISTYLYDA 72

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EGEL+    SLV +ET +++AR L L + +R+         +   +   +V E++
Sbjct: 73  YPHCAEGELTKMRASLVQSETLARLARRLHLGAHLRMGRGEMLGGGAERQNNLENVFEAV 132

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLD G + A  +V + +        +    +D KT LQE+          Y+    
Sbjct: 133 IGAVYLDRGWDAARAYVQRQFADELPHLRQEHVAQDYKTMLQEYVQGHDHEPIAYEQVAE 192

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGPDHD RFT+ V I      +G   SK+ AEQ AAA  L+R 
Sbjct: 193 SGPDHDKRFTMRVRIGTAPLGEGTGRSKKEAEQHAAAAALERL 235


>gi|302383079|ref|YP_003818902.1| ribonuclease III [Brevundimonas subvibrioides ATCC 15264]
 gi|302193707|gb|ADL01279.1| ribonuclease III [Brevundimonas subvibrioides ATCC 15264]
          Length = 237

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 90/237 (37%), Positives = 134/237 (56%), Gaps = 11/237 (4%)

Query: 1   MSALR---YSTLEKRIGYAFANRSLLEKALTHSS-------ISHSYQESYERLEFLGDRI 50
           M+ +R    + L +R+G+ F + +LLE+ALTHSS        +       ERLEFLGDR+
Sbjct: 1   MANIRAEAVTALVQRLGHDFRDPALLERALTHSSVGEGADKAAGKPARHNERLEFLGDRV 60

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           LGLL++  L + F +A EGELS R ++LV    C +V   L +   +R+S    K     
Sbjct: 61  LGLLVAQRLHHDFPAADEGELSSRLHALVDKHACGRVGEALKIGDALRLSPGETKTGGRR 120

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKF 169
              + AD VE+L+AA++LDGG+E A    D+ W  + A  + +   + K+ LQEWA    
Sbjct: 121 KEGVVADAVEALLAAVFLDGGLEAARAVFDRAWAHELASPAPRALNNPKSALQEWAQGHG 180

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
              P Y+V  ++G DH P FTV V I G+ P   +  S++ AE+ AA  +L+REG+ 
Sbjct: 181 RPLPSYRVASQTGSDHAPTFTVEVSIEGVEPLTAVGRSRQDAEKAAATALLQREGVI 237


>gi|189485602|ref|YP_001956543.1| ribonuclease III [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287561|dbj|BAG14082.1| ribonuclease III [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 243

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 109/225 (48%), Gaps = 5/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTL 58
           M    +   +K I Y F +  +L  ALTH S +     +    R+EFLGD IL  +++  
Sbjct: 1   MLNKNWEKFQKIIEYKFGDPKILATALTHKSYAAETVGENYNRRMEFLGDSILSAIVAET 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  +    EG+LS     ++SA   S  ARE+DL   I +             S+  DV
Sbjct: 61  LYLRYPRESEGKLSQFKAQIISAHNLSSWAREMDLGGCIYLGKSEDTKEARQRESLLCDV 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            E++I A+YLDGG E A  FV ++   +         D K+ LQE   + +   PEYKV 
Sbjct: 121 FEAVIGAIYLDGGFENAKKFVLRFLNDQKEIEIT---DYKSRLQEILQSIYKELPEYKVI 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             SGPDH+ +F V V I      +G   SK+ A+Q AA + +K  
Sbjct: 178 KESGPDHNKKFEVAVYIKSELLGKGAGNSKKEAQQFAAKQAMKNI 222


>gi|257460238|ref|ZP_05625341.1| ribonuclease III [Campylobacter gracilis RM3268]
 gi|257442303|gb|EEV17443.1| ribonuclease III [Campylobacter gracilis RM3268]
          Length = 303

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 5/221 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               L++++GY F N++ L+ ALTH S  + +  + ERLEFLGD ++ L++   LF  F 
Sbjct: 3   NLEKLQEKLGYKFKNQTHLKIALTHKSAKNGH--NNERLEFLGDAVMDLIVGEYLFKKFS 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           S  EG+LS    +LV+  + S+ A+ L +   + +S    ++      S+ +D  E+++ 
Sbjct: 61  S-DEGDLSKLRAALVNESSFSKFAKFLGIGENLNMSLSEERNGGREKPSLLSDAFEAIMG 119

Query: 125 ALYLDGGIEVAGTFVDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL+ G++                +   +  RD KT LQE   AKFGVTPEY +   SG
Sbjct: 120 AVYLESGLQNTARIAIAILEILYPRISFNELVRDYKTALQELTQAKFGVTPEYILLGSSG 179

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH   F +   + G   +  +  SK+ AEQ  A   +   
Sbjct: 180 PDHKKSFEMAALVGGKWLSSAVGASKKEAEQKCAQIAIDLL 220


>gi|268608881|ref|ZP_06142608.1| ribonuclease III [Ruminococcus flavefaciens FD-1]
          Length = 229

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 115/224 (51%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
           +    E  IGY F N+ L+E+AL+HSS ++  +    S ERLEFLGD +L +++S  L+ 
Sbjct: 3   KTEEFENIIGYTFKNKELIEQALSHSSYANEKKRAGGSNERLEFLGDSVLSIVVSDYLYK 62

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           + +   EGEL+    SLV  ++    A++++L  F+ +             SI AD  E+
Sbjct: 63  NINV-PEGELTKMRASLVCEKSLFVFAQQIELGEFLHLGKGEENTGGRERPSILADAFEA 121

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV-TFR 180
           +IAA+YLDGG+E A   + ++  +   ++ K        L +    K        V    
Sbjct: 122 VIAAIYLDGGMEAAAKHILRFMPEDIKRTKKPVLSDFKTLLQEVVQKNPEEKVEYVLIGE 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GPDH+ RF V V ++     +G   SK+ AEQ+AA E L+  G
Sbjct: 182 EGPDHNKRFVVEVCLNSQVIGKGKGKSKKEAEQLAAKEALELMG 225


>gi|187918561|ref|YP_001884124.1| ribonuclease III [Borrelia hermsii DAH]
 gi|119861409|gb|AAX17204.1| ribonuclease III [Borrelia hermsii DAH]
          Length = 243

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 114/224 (50%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
           +       +   F +  LL  +L+HSS ++ + +   + ERLEFLGD +L L+I+  L+ 
Sbjct: 15  KLDEFLMGLHIDFNDIDLLNMSLSHSSYANEFDQKYANNERLEFLGDSVLNLIITDYLYK 74

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EGELS   + +VS E+ S +AREL+L ++I +      +       I AD +E+
Sbjct: 75  FYPEKSEGELSKARSYIVSEESLSSIARELNLGNYILLGRGEENNDGRNKKGIIADAIEA 134

Query: 122 LIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            + ALYLDGG     A          R + +    +D K+ LQE+   K+ ++P Y++  
Sbjct: 135 FVGALYLDGGFLKASAFVVELFEVHIRLMFNRGDFKDYKSLLQEYVQKKYKISPNYRLAK 194

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GPDH+  F V + ++    + G   SK+ AE +AA   LK  
Sbjct: 195 ELGPDHNKIFCVELYVNDKFISNGKGKSKKEAEMIAAEMALKTI 238


>gi|148256032|ref|YP_001240617.1| ribonuclease III [Bradyrhizobium sp. BTAi1]
 gi|146408205|gb|ABQ36711.1| RNAse III [Bradyrhizobium sp. BTAi1]
          Length = 368

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 99/217 (45%), Positives = 137/217 (63%), Gaps = 3/217 (1%)

Query: 12  RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           RIG+ FA+ SLL  A+TH S    S    +SY+RLEFLGD +LGL++S +L+  F SA E
Sbjct: 145 RIGHHFADPSLLSTAVTHVSALKSSKKRGDSYQRLEFLGDHVLGLIVSDMLYRSFPSADE 204

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS R   LV  E+C+ VA+ L L   I++ +           S+  DV E++I A++L
Sbjct: 205 GELSKRLADLVRKESCADVAKSLGLLDDIKLGAVGAGAGARLRKSVLGDVCEAVIGAIFL 264

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG   A  FV++ W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP HDP+
Sbjct: 265 DGGYAAAAGFVERNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQ 324

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           F V V++ GL  A+G+  SKRAAE+VAA+ +++REG+
Sbjct: 325 FRVAVDLPGLESAEGVGGSKRAAEKVAASVMIEREGV 361


>gi|227530552|ref|ZP_03960601.1| ribonuclease III [Lactobacillus vaginalis ATCC 49540]
 gi|227349558|gb|EEJ39849.1| ribonuclease III [Lactobacillus vaginalis ATCC 49540]
          Length = 251

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/220 (30%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L K     F N  LL +A T +S  + +     + YER+EFLGD +L L++S  ++  F 
Sbjct: 27  LAKEFDIHFTNPDLLAEAFTQASYVNEHPHQGLKFYERIEFLGDAVLELIVSEYIYKRFP 86

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G+L+    ++V  ++ S+ A+E     +IR+              +  D+ ES I 
Sbjct: 87  ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARQRPGLLCDIFESFIG 146

Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ALYLD G      FV +    +          DAKT LQE+      V  EY +   SG 
Sbjct: 147 ALYLDQGRPAVEKFVRRVIFPKLDLGWFDHAVDAKTSLQEFLQRDGDVDIEYHLLQESGT 206

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++DP F V V   G    +G   SK+ AE  AA++ L + 
Sbjct: 207 ENDPEFKVNVSADGKVIGEGTGSSKKHAEMKAASQALNKL 246


>gi|309805468|ref|ZP_07699513.1| ribonuclease III [Lactobacillus iners LactinV 09V1-c]
 gi|312872453|ref|ZP_07732522.1| ribonuclease III [Lactobacillus iners LEAF 2062A-h1]
 gi|312874441|ref|ZP_07734471.1| ribonuclease III [Lactobacillus iners LEAF 2052A-d]
 gi|312874574|ref|ZP_07734599.1| ribonuclease III [Lactobacillus iners LEAF 2053A-b]
 gi|315653376|ref|ZP_07906298.1| ribonuclease III [Lactobacillus iners ATCC 55195]
 gi|325911776|ref|ZP_08174180.1| ribonuclease III [Lactobacillus iners UPII 143-D]
 gi|308165119|gb|EFO67357.1| ribonuclease III [Lactobacillus iners LactinV 09V1-c]
 gi|311089965|gb|EFQ48384.1| ribonuclease III [Lactobacillus iners LEAF 2053A-b]
 gi|311090053|gb|EFQ48467.1| ribonuclease III [Lactobacillus iners LEAF 2052A-d]
 gi|311092035|gb|EFQ50410.1| ribonuclease III [Lactobacillus iners LEAF 2062A-h1]
 gi|315489301|gb|EFU78941.1| ribonuclease III [Lactobacillus iners ATCC 55195]
 gi|325476282|gb|EGC79444.1| ribonuclease III [Lactobacillus iners UPII 143-D]
          Length = 225

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 4/226 (1%)

Query: 1   MSALRYS-TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57
           M +  +   L+++    F N  LLE+ALTHSS S+ +Q  ++YE+LEFLGD +L L IS 
Sbjct: 1   MVSESFKNELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+ HF +  EGEL+   +++V  E  SQ A E   +  +++     K       ++  D
Sbjct: 61  YLYRHFPNMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLED 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           V E+   AL+LD G+     F+         +             +      G       
Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYK 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              S     P+FTV + ++G   +QG+  SK+AAEQVAA+  LK  
Sbjct: 181 VIDSDEA-QPKFTVQLIVAGENISQGIGRSKKAAEQVAASVALKNI 225


>gi|262373078|ref|ZP_06066357.1| ribonuclease III [Acinetobacter junii SH205]
 gi|262313103|gb|EEY94188.1| ribonuclease III [Acinetobacter junii SH205]
          Length = 232

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 115/225 (51%), Gaps = 5/225 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           + L  + L+ RIG+ F    LL+ ALTH S+SH +  +YERLEFLGD +LG++I+  L++
Sbjct: 8   NKLNDARLQNRIGHQFQQFDLLKLALTHRSVSHKH--NYERLEFLGDSLLGMIIANYLYH 65

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VE+
Sbjct: 66  TYPKENEGRLTRMRATLVRQEALGKIANDLQLSRSLILSTGELKSGGHHRESILADTVEA 125

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD---AKTELQEWAHAKFGVTPEYKVT 178
           +I A+YLD         +   W +  L   +        K+ LQE+  A+    P Y+V 
Sbjct: 126 IIGAIYLDSNDLNLLQSIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 185

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G   +  F V   + G+    G   S+R AEQ AAAE+LK  
Sbjct: 186 DIQGDAPNQHFKVECNVEGMPKFIGEGSSRRFAEQTAAAEILKLL 230


>gi|237746716|ref|ZP_04577196.1| ribonuclease III [Oxalobacter formigenes HOxBLS]
 gi|229378067|gb|EEO28158.1| ribonuclease III [Oxalobacter formigenes HOxBLS]
          Length = 273

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 108/220 (49%), Gaps = 6/220 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L+ RIGY F + +LLE A+TH S S  +    ERLEFLGD +L  + +  L+  +
Sbjct: 7   INLKMLQDRIGYTFHDAALLETAMTHRSYSSHH---NERLEFLGDSLLNCVTAINLYERY 63

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +  EG LS   +SLV  +   ++A +L+L+ F+R+     K       SI AD +E+L 
Sbjct: 64  AALNEGSLSRLRSSLVRQQALYEIACKLELSRFLRLGEGELKAGGFKRPSILADAMEALF 123

Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G E     + + +           + +DAKT+LQE+        PEY V    
Sbjct: 124 GAVFLDAGFETVKRVITRLFADMMKELDPETYGKDAKTQLQEYLQGHKMALPEYHVVATR 183

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220
           G  H+  F V   I        G   S+RA EQ AA + L
Sbjct: 184 GAAHNQEFEVECVIGKFDIHVYGTGSSRRAGEQEAARKAL 223


>gi|227510452|ref|ZP_03940501.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190104|gb|EEI70171.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 236

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/218 (33%), Positives = 108/218 (49%), Gaps = 5/218 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64
           L++       ++ LL++A T +S  + +++     YERLEFLGD +L L++S  +F  + 
Sbjct: 9   LKQDFNIHIDDQDLLDEAFTQASYVNEHRDQHLKFYERLEFLGDAVLQLIVSEYIFKRYP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G L+    ++V+ ++ S  ARE     +IR+     K       S+  D+ ES + 
Sbjct: 69  KLPQGRLTRLRAAMVNEQSFSTFARECHFNKYIRLGKGEEKAGARDRDSLLCDIFESFVG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ALYLD G  V   FV +    +          D KTELQE A A   V  +Y++    GP
Sbjct: 129 ALYLDQGKTVVEGFVQQVIFPKLDEGMFAKFFDHKTELQELAQADGPVDIDYELVDEYGP 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           D+D  F V V I       G+  SK+ AEQ AA E LK
Sbjct: 189 DNDRLFKVNVAIDDKLLGVGIGHSKKDAEQRAAQEALK 226


>gi|256847360|ref|ZP_05552806.1| ribonuclease III [Lactobacillus coleohominis 101-4-CHN]
 gi|256716024|gb|EEU30999.1| ribonuclease III [Lactobacillus coleohominis 101-4-CHN]
          Length = 233

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 9/227 (3%)

Query: 6   YSTLEKRI----GYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIST 57
            + L++ +       F N  LL +A T +S  + + E     YER+EFLGD +L L +S 
Sbjct: 2   ITELQQYLADEFDIHFQNPDLLAEAFTQASYVNEHPEQHLKYYERIEFLGDAVLQLFVSE 61

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            ++  +    +G+L+    ++V  ++ S+ A+E     +IR+              +  D
Sbjct: 62  YIYRRYPELLQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRPGLLCD 121

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + ES I ALYLD G +    F+ +    +  +       D KT LQE+      V  EY 
Sbjct: 122 IFESFIGALYLDQGRDAVERFIHRVIFPKLDMGWFDHAVDTKTSLQEFLQRDGDVDIEYH 181

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   +G ++ P F V V   G   AQG   SK+ AE  AAA+ LK+ 
Sbjct: 182 LLDETGSENAPEFKVNVSADGQVLAQGTGSSKKHAEMDAAAQALKKL 228


>gi|46445908|ref|YP_007273.1| putative ribonuclease III [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81627660|sp|Q6MEK1|RNC_PARUW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|46399549|emb|CAF22998.1| putative Ribonuclease III [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 242

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/219 (32%), Positives = 109/219 (49%), Gaps = 9/219 (4%)

Query: 1   MSALRY-----STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILG 52
           M+ + +       +E ++GY F +  LL  A  H S  +  +E     ERLEFLGD +LG
Sbjct: 8   MNPIEHVIRQAPAIEAKLGYTFKDPQLLVLAFVHRSFINENREVNQHNERLEFLGDSVLG 67

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           +LIS  L+       EG+LS   + LV A +C    + LDL+ ++ +    R +      
Sbjct: 68  MLISDYLYCKLPKTPEGQLSYLRSRLVEASSCVHYIQSLDLSGYLLLGKGERMNDGRGRE 127

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGV 171
           SI AD+ E++I A+YLDGG++ A  F+ K + Q          R+ K  LQ++    +  
Sbjct: 128 SILADLFEAIIGAIYLDGGLQAAKDFLFKNFHQHIEIILATPLRNWKALLQDYCQKNYQQ 187

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
           TP Y+V   SGPDH   F + V I      +G   SK+ 
Sbjct: 188 TPLYQVLHESGPDHSKVFQISVWIQDRELGRGKGTSKKE 226


>gi|1228146|gb|AAA92440.1| RNase III [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 224

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 116/226 (51%), Gaps = 8/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L 
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALS 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S   + LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  -RFPRVDEGDMSRMRDPLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 116

Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 117 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  HD  FT+  ++SGL  P  G   S+R AEQ AA  V K+ 
Sbjct: 177 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAANSV-KKL 221


>gi|242373525|ref|ZP_04819099.1| ribonuclease III [Staphylococcus epidermidis M23864:W1]
 gi|242348888|gb|EES40490.1| ribonuclease III [Staphylococcus epidermidis M23864:W1]
          Length = 248

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 5/216 (2%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           G++F N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF+      EG
Sbjct: 25  GFSFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPHLPEG 84

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+    ++V   +    A ++DL   I +     K       S+ +D  E+ + ALYLD
Sbjct: 85  NLTKMRATIVCEPSLVIFANKIDLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLD 144

Query: 130 GGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
            G+E    F +K        +      D KT+ QE+ H +      Y++    GP H   
Sbjct: 145 QGLETVWAFAEKVIFPYVEDNELVGVVDFKTQFQEFVHRQNKGDVTYRLIKEEGPAHHRL 204

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           FT  V +   A A+G   +K+ +EQ AA +  K   
Sbjct: 205 FTSEVILENKAVAEGKGKTKKESEQKAAEQAYKSMK 240


>gi|258405510|ref|YP_003198252.1| ribonuclease III [Desulfohalobium retbaense DSM 5692]
 gi|257797737|gb|ACV68674.1| ribonuclease III [Desulfohalobium retbaense DSM 5692]
          Length = 237

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 7/230 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIST 57
           M       +++R+ Y F ++ LL  ALTHSS ++ +   QE  ERLEFLGD +L L IS 
Sbjct: 1   MDDSVLRLVQQRLQYTFRDQQLLLLALTHSSYANEHPHIQEHNERLEFLGDAVLELAISE 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+  +  A EG L+   + LVS    + + R+L++A  + +             +I  D
Sbjct: 61  ELYLRYPEAPEGSLTSLRSKLVSEPALAALGRQLEIAPALFLGRGEESQGGRERDAILCD 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS----GKFRRDAKTELQEWAHAKFGVTP 173
           V+ES+  A++LD   + A T + + +  +   +     +  RD K+ LQE     F   P
Sbjct: 121 VMESIFGAIFLDSDYDRAKTCILELYVDKWPSAPSLGHERLRDFKSRLQECTQQLFKDRP 180

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            Y +   +GP+H   + V V++   + A   D S + AEQ AA + L+  
Sbjct: 181 VYHLVDSTGPEHAKVYHVRVDLPNGSQASAADSSVKKAEQQAARKALESL 230


>gi|297617466|ref|YP_003702625.1| ribonuclease III [Syntrophothermus lipocalidus DSM 12680]
 gi|297145303|gb|ADI02060.1| ribonuclease III [Syntrophothermus lipocalidus DSM 12680]
          Length = 232

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 4/211 (1%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL KALTH S S   +  E+ +RLEFLGD +L ++++  L+ +F    EG+L+    
Sbjct: 21  DTGLLTKALTHPSYSQENEAVENNQRLEFLGDAVLNMVVAEYLYKNFPERPEGDLTRIRA 80

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            +V  +   +VA  L +  ++ +             SI AD VE+++ A+YLD G+E A 
Sbjct: 81  KVVCEKALVKVANTLKVGEYLYLGRGEELSGGRKRNSILADTVEAVVGAVYLDQGLEYAR 140

Query: 137 TFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
            F+ +Y  +     +     D K++LQE   ++      Y +   SGP HD  F   V  
Sbjct: 141 DFILRYLAQDIHEVAEGNFYDYKSQLQELVQSRGKDNVTYAILEESGPAHDKTFIAGVFY 200

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
                AQG+  SK+ AEQ AA +VL +  ++
Sbjct: 201 RHKLLAQGVGKSKKEAEQKAAEKVL-QMKVF 230


>gi|260551498|ref|ZP_05825682.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624]
 gi|260405492|gb|EEW98985.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624]
          Length = 230

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 113/230 (49%), Gaps = 9/230 (3%)

Query: 1   MSALRYS----TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56
           M+  ++      L  RIGY F    LL+ ALTH S+S  ++ +YERLEFLGD +LG++I+
Sbjct: 1   MTKHQFKLSDPRLLSRIGYQFKQPELLQLALTHRSVS--HKYNYERLEFLGDSLLGMIIA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L++ +    EG L+    +LV  E   ++A +L L+  + +S+   K       SI A
Sbjct: 59  NYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILA 118

Query: 117 DVVESLIAALYLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
           D VE++I A+YLD                     ++     +D K+ LQE+  A+    P
Sbjct: 119 DTVEAIIGAIYLDSSDLNLLKDIVLKWYVPYLDHIEPTDQLKDPKSRLQEYLQARKKPLP 178

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            Y+V    G      F V   + GL    G   S+R AEQ AAAE+LK  
Sbjct: 179 VYEVVDIQGDAPHQHFKVECLVDGLPKIYGEGSSRRFAEQAAAAEILKLL 228


>gi|325849059|ref|ZP_08170551.1| ribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480304|gb|EGC83367.1| ribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 238

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 112/219 (51%), Gaps = 7/219 (3%)

Query: 13  IGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           IGY F N++L++ ALTHSS  +      + S ERLEFLGD IL L++S  L+ +  S  E
Sbjct: 18  IGYIFKNKNLIDVALTHSSYINESKDKNRSSNERLEFLGDSILDLVVSEELYKNHKSYPE 77

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+   + +V   + S+ + + +L+S++               S++AD  E+  AA+YL
Sbjct: 78  GKLTKIRSRIVCTSSFSKASEKFNLSSYLLFGKGEISHNGREKKSVKADTFEAFCAAIYL 137

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D G      F+ + + Q   +  +      D KT+LQE+ +       +YK+    GP+H
Sbjct: 138 DAGYVFLKNFLMENYYQTVKELLENDLLFIDYKTKLQEYFNKTNRTILKYKLAKEEGPEH 197

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  F + V       + G   +K+ AEQ+AA +  K+  
Sbjct: 198 NKTFYMDVYAKNKKLSTGKGKNKKEAEQMAAMKAYKKLN 236


>gi|313897603|ref|ZP_07831145.1| ribonuclease III [Clostridium sp. HGF2]
 gi|312957555|gb|EFR39181.1| ribonuclease III [Clostridium sp. HGF2]
          Length = 227

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIST 57
           M  + +  L+ +   A++++ L+ +AL HSS  + ++      ERLEF+GD +L L  + 
Sbjct: 1   MDTI-FEWLKNQ-NIAYSDKKLITQALVHSSYVNEHKSYAHDNERLEFMGDAVLQLWTTK 58

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF       EG+++     LV  E  ++  R+L L  ++ +     K       SI AD
Sbjct: 59  KLFLLEPELSEGQMTTLRAQLVCEEALAEYNRQLGLGKYLMLGVGEEKTGGRQRDSILAD 118

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + E+L+ A++LD G+E   + +        +    +   D KT+LQE+  +    T  Y+
Sbjct: 119 MFEALLGAVFLDQGMEAIDSILSAVVTPAISRPKSEKVIDYKTKLQEYIQSDSRKTVHYE 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               SGP + P F V+V +  +   +G   SK+ AEQ+AA +  ++ 
Sbjct: 179 TVNVSGPSNKPEFEVIVMLDDINLGRGKGFSKKRAEQMAAKDAFEKM 225


>gi|116327694|ref|YP_797414.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|122284510|sp|Q053L4|RNC_LEPBL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116120438|gb|ABJ78481.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
          Length = 247

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 112/223 (50%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62
           +  L K+IG  F+       A  HSS  +   E     ERLEFLGD +LGL+ +  LF  
Sbjct: 21  FKKLSKKIGIKFSKIEYYNTAFIHSSYKNENPEILEDNERLEFLGDSVLGLVAARSLFQK 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  A EGELS   + +VS    + +A +L+L  ++ +    +         I A++ ESL
Sbjct: 81  YPKASEGELSRIKSKIVSTPILNSIAEKLNLGEYLLLGKGEKNSQGKGRRKIAANLFESL 140

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YLD G EVA  F+ ++  +        +  RD KT+LQE++   F   P Y++   
Sbjct: 141 VGAIYLDRGFEVAEKFIVQHLLEFAENPDMEESVRDYKTQLQEYSQKHFKTLPVYRMKGE 200

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGPDH   F V V I     A G   SK+ AEQ AA E+  R 
Sbjct: 201 SGPDHSKMFQVSVRIRDQWEASGYGASKKIAEQNAAKELYIRI 243


>gi|300869947|ref|YP_003784818.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
 gi|300687646|gb|ADK30317.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
          Length = 229

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 3/226 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58
           M        EK + Y+F N++ L +A+TH + ++        +RLEFLGD +L L+IS  
Sbjct: 1   MINKILLDCEKVLQYSFKNKNYLLEAITHRTFANENGNMKYNQRLEFLGDSVLSLIISEH 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           ++  +++ KEG+LS     LVS  T + ++R+L L  F+ +             ++  D+
Sbjct: 61  IYKEYNNVKEGKLSKIKAYLVSQNTLANISRKLKLGDFLLLGKGEEASGGRERDNMLEDL 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            E++I A+YLD  +E    FV + +K    K      D   +       +          
Sbjct: 121 FEAIIGAIYLDSNLENTKNFVMRVYKDILNKLDINNFDKDYKTILQEIVQKKYKITPTYK 180

Query: 179 FRSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                ++D   F V V +     A G+  SK+ AE  AA + L+  
Sbjct: 181 SYEYNENDNIMFKVEVYVKTKKYASGIGKSKKEAEINAAKKALEEI 226


>gi|319937586|ref|ZP_08011991.1| ribonuclease III [Coprobacillus sp. 29_1]
 gi|319807426|gb|EFW04035.1| ribonuclease III [Coprobacillus sp. 29_1]
          Length = 232

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 104/227 (45%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLIST 57
           M  L +   E      F   SL ++A TH+S ++    Y + YERLEF+GD +L L +S 
Sbjct: 1   MKILDFLQAE---NIPFQKLSLYKEAFTHASYANEAHHYNKDYERLEFMGDAVLQLYVSD 57

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF+ F    EG L+   + LV  E+ ++ ++EL L   + +     K       S+ A+
Sbjct: 58  FLFHLFPDVPEGTLTTLRSKLVREESLARFSKELGLGELLFLGVGEEKSGGRERESVLAN 117

Query: 118 VVESLIAALY-LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + ES I ALY   G  EV        ++           D KT LQE   A    T  Y+
Sbjct: 118 IFESFIGALYLDCGKDEVIKILEQTIFQHVNDLDYDDITDYKTTLQELIQADQRKTVTYE 177

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   SGP + P F V V +  +    G   SK+ AEQ AA + L + 
Sbjct: 178 LLETSGPSNAPEFKVAVIMDEMRLGVGKGTSKKRAEQQAAKDALNKL 224


>gi|119897933|ref|YP_933146.1| ribonuclease III [Azoarcus sp. BH72]
 gi|119670346|emb|CAL94259.1| putative Ribonuclease III [Azoarcus sp. BH72]
          Length = 223

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 105/223 (47%), Gaps = 6/223 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++ +G+ FA   LL++ALTH S       + ERLEFLGD IL  + S  L+  F
Sbjct: 1   MSVEHLQRALGHQFAQPELLQQALTHRSFGQ---PNNERLEFLGDSILNCVTSIALYERF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              +EGELS     LV  +   ++A +L L   +R+     K       SI AD +E++ 
Sbjct: 58  GGLREGELSRLRAGLVCQDALHRIAVQLKLGDCLRLGEGELKSGGFRRPSILADALEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA++LD     A   +D+ +      ++ G   +D KT LQEW   +    P Y +   +
Sbjct: 118 AAVFLDSDFAGAKAVIDRLYAPLLAEVEPGAPAKDPKTALQEWLQGRKSPLPTYVMVQVT 177

Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G  H   F V  E+        G   S+R AEQ AA   L + 
Sbjct: 178 GEAHAQEFEVACEVEKHKVRTVGRGTSRRIAEQRAAELALAQL 220


>gi|184159116|ref|YP_001847455.1| ribonuclease III [Acinetobacter baumannii ACICU]
 gi|183210710|gb|ACC58108.1| dsRNA-specific ribonuclease [Acinetobacter baumannii ACICU]
          Length = 234

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 75/219 (34%), Positives = 110/219 (50%), Gaps = 5/219 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L  RIGY F    LL+ ALTH S+S  ++ +YERLEFLGD +LG++I+  L++ +    
Sbjct: 16  RLLSRIGYQFKQPELLQLALTHRSVS--HKYNYERLEFLGDSLLGMIIANYLYHAYPHEN 73

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+Y
Sbjct: 74  EGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIY 133

Query: 128 LDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LD                     ++     +D K+ LQE+  A+    P Y+V    G  
Sbjct: 134 LDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDA 193

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               F V   + GL+   G   S+R AEQ AAAE+LK  
Sbjct: 194 PHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILKLL 232


>gi|300691972|ref|YP_003752967.1| ribonuclease III (RNase III) [Ralstonia solanacearum PSI07]
 gi|299079032|emb|CBJ51694.1| Ribonuclease III (RNase III) [Ralstonia solanacearum PSI07]
          Length = 256

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 110/221 (49%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S S       ERLEFLGD IL   ++ +L+  F
Sbjct: 1   MSLEALQQRLGYRFSKPELLQQALTHRSHS---AMHNERLEFLGDSILNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L   +R+     K       SI AD +E++ 
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + K +     +       +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  H+ +F V   I  L     G   S+RAAEQ AA   L+
Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218


>gi|260583707|ref|ZP_05851455.1| ribonuclease III [Granulicatella elegans ATCC 700633]
 gi|260158333|gb|EEW93401.1| ribonuclease III [Granulicatella elegans ATCC 700633]
          Length = 234

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 5/226 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62
             + K     F N + L++ALTHSS ++ +++      ER+EFLGD +L L IS  L+  
Sbjct: 9   EKIAKEFQIQFKNENYLKEALTHSSYANEHKDCKGIYNERIEFLGDAVLELFISNWLYRQ 68

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             + KEGEL+     +V  E+ S +A+E +L  ++ +    R        ++  DV E+ 
Sbjct: 69  MPTKKEGELTKLRAQIVCEESLSTLAKECELDKYLLLGKGERASKGHENPAVLCDVFEAF 128

Query: 123 IAALYLDGGIEV-AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A+YLD G E  +         +          D KTELQE+      V   Y++    
Sbjct: 129 VGAIYLDQGFEGASQFLTQVIISKIKDGRFTLVGDFKTELQEYFQRNGNVNIRYELLKEE 188

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           GP H   +TV V ++      G   +K+AAEQ++A   L++  + +
Sbjct: 189 GPSHARYYTVQVHVNDKGYEIGEGKTKKAAEQLSARRTLEKLNVIS 234


>gi|17545782|ref|NP_519184.1| ribonuclease III [Ralstonia solanacearum GMI1000]
 gi|22654059|sp|Q8Y0I1|RNC_RALSO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|17428076|emb|CAD14765.1| probable ribonuclease III (rnase III) protein [Ralstonia
           solanacearum GMI1000]
          Length = 256

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 109/221 (49%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S         ERLEFLGD IL   ++ +L+  F
Sbjct: 1   MSLEALQQRLGYRFSKPELLQQALTHRS---HNAMHNERLEFLGDSILNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L   +R+     K       SI AD +E++ 
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLLLPDELRLGEGELKSGGFRRPSILADALEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + K +     +       +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  H+ +F V   I  L     G   S+RAAEQ AA   L+
Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218


>gi|212636523|ref|YP_002313048.1| ribonuclease III [Shewanella piezotolerans WP3]
 gi|226735379|sp|B8CQJ5|RNC_SHEPW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|212558007|gb|ACJ30461.1| Ribonuclease III [Shewanella piezotolerans WP3]
          Length = 225

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 82/227 (36%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     L + +GY FA ++LL++ALTH S S+   +  ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNIPRLCRTLGYEFAEQALLDQALTHRSASN---KHNERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +  +++A E  L  ++++     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E++I A+YLD  IE     V  ++  R  +     ++D KT LQE         P YKV 
Sbjct: 118 EAIIGAIYLDSDIEKCRKLVLNWYASRLRVIEPINQKDPKTLLQEHLQKFRKPLPIYKVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
              G  H+  FTV   +  L  A  G+  S+R AEQ AAA+VL+   
Sbjct: 178 HTEGDAHEQTFTVECVVEDLRQAVVGVASSRRKAEQSAAAQVLELIK 224


>gi|29840106|ref|NP_829212.1| ribonuclease III [Chlamydophila caviae GPIC]
 gi|33301541|sp|Q823R4|RNC_CHLCV RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|29834454|gb|AAP05090.1| ribonuclease III [Chlamydophila caviae GPIC]
          Length = 237

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 102/224 (45%), Gaps = 4/224 (1%)

Query: 1   MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLIS 56
           M+  +    +E ++ + F    LL  ALTH S  +      E  ERLEFLGD +L L+++
Sbjct: 1   MNNLINIKEVEAKLNFTFTQPKLLVTALTHPSYRNETVTITEDSERLEFLGDAVLCLIVT 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F S  EG LS    +L++A +C Q    L L   + +    R       TS  A
Sbjct: 61  EHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEHLLIGKGERIQNERGRTSAYA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           ++ E+++ A+YLDGG+  A          +         + K  LQ+    +    P Y+
Sbjct: 121 NLFEAVLGAVYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKQLRTLPVYQ 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            T  +     P + + V ++     +G   SK+ AE++AA + L
Sbjct: 181 CTPWTSQQGVPGYHIRVIVNDEVWGEGCALSKKEAEKLAAQKAL 224


>gi|169632753|ref|YP_001706489.1| ribonuclease III [Acinetobacter baumannii SDF]
 gi|238688259|sp|B0VTM5|RNC_ACIBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|169151545|emb|CAP00312.1| ribonuclease III, ds RNA [Acinetobacter baumannii]
          Length = 230

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 114/230 (49%), Gaps = 9/230 (3%)

Query: 1   MSALRYS----TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56
           M+  ++      L  RIGY F    LL+ ALTH S+S  ++ +YERLEFLGD +LG++I+
Sbjct: 1   MTKHQFKLSDPRLLSRIGYQFKQPELLQLALTHRSVS--HKYNYERLEFLGDSLLGMIIA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L++ +    EG L+    +LV  E   ++A +L L+  + +S+   K       SI A
Sbjct: 59  NYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILA 118

Query: 117 DVVESLIAALYLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
           D VE++I A+YLD                     ++     +D K+ LQE+  A+    P
Sbjct: 119 DTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLP 178

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            Y+V    G      F V   + GL+   G   S+R AEQ AAAE+LK  
Sbjct: 179 VYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGASRRFAEQAAAAEILKLL 228


>gi|15835187|ref|NP_296946.1| ribonuclease III [Chlamydia muridarum Nigg]
 gi|270285359|ref|ZP_06194753.1| ribonuclease III [Chlamydia muridarum Nigg]
 gi|270289375|ref|ZP_06195677.1| ribonuclease III [Chlamydia muridarum Weiss]
 gi|301336756|ref|ZP_07224958.1| ribonuclease III [Chlamydia muridarum MopnTet14]
 gi|13878715|sp|Q9PK97|RNC_CHLMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|7190609|gb|AAF39406.1| ribonuclease III [Chlamydia muridarum Nigg]
          Length = 232

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 106/224 (47%), Gaps = 4/224 (1%)

Query: 1   MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIS 56
           M   +    +E ++ + F+   LL  ALTH S  + +    E  ERLEFLGD +LGL+++
Sbjct: 1   MQRTVNIQAVESKLKFTFSQPRLLVTALTHPSYRNEFPSDGEDSERLEFLGDAVLGLVVT 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F S  EG LS   ++LV+AE C    ++L L   + +    +        S  A
Sbjct: 61  EHLFLLFPSLNEGLLSTTRSALVNAEACFNYTQKLSLGEHLLIGRGEKMQSHRGKISAYA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           ++ E+++ A+YLDGG+  A   +      +         + K  LQ++      V P Y 
Sbjct: 121 NLFEAILGAVYLDGGLAPARQIIVPLLPNKEAILPLMLVNPKNRLQQFTQQTLKVLPTYI 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
               S  D  P + V V ++     +G   SK+ AE++AA + L
Sbjct: 181 ALPWSSEDGTPGYHVQVFVNEKLWGEGFAGSKKEAEKLAAKQAL 224


>gi|197294673|ref|YP_001799214.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma australiense]
 gi|171854000|emb|CAM11965.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma australiense]
          Length = 222

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLF 60
           +      K++     N +L  KALTHSS S+     QE+ ERLEFLGD I+GLL++  L+
Sbjct: 1   MNTEHFLKKLNIVPKNIALYRKALTHSSYSNEKEFLQENNERLEFLGDAIIGLLMADYLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG ++ +    V  ++ +  A+ ++L +++ +    + +      SI AD  E
Sbjct: 61  QKNKE-NEGVMTKKRAQAVCEKSLTIYAKSINLQNYLFLGKGEK-NKDFNTKSIIADAFE 118

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +L  A+YLD G   A     +       K+            +          +YK+   
Sbjct: 119 ALFGAIYLDLGYNSAKKVFQRLVIPHLPKAIDIIDFKTQ--LQEIVQSEKKIIQYKIVSE 176

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GP H  +F   V +       G   +K+ AEQ AA E L + 
Sbjct: 177 EGPAHSKKFIAEVYLDKKILGSGEGTTKKEAEQKAAQEALSKL 219


>gi|157362928|ref|YP_001469695.1| ribonuclease III [Thermotoga lettingae TMO]
 gi|189043371|sp|A8F397|RNC_THELT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157313532|gb|ABV32631.1| Ribonuclease III [Thermotoga lettingae TMO]
          Length = 238

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 74/236 (31%), Positives = 119/236 (50%), Gaps = 12/236 (5%)

Query: 1   MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRI 50
           M+           ++IGY F    LL  AL HSS +H  +       ES ERLEFLGD +
Sbjct: 1   MNKEEAKILIDFMEKIGYRFYEPELLYNALCHSSYAHEQKQRGRKDVESNERLEFLGDAV 60

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           + LL++  L+  F  A EG ++    ++ S E  +Q+AR+++L  ++ +           
Sbjct: 61  IDLLLAEYLYLEFPEASEGVMAKVKAAIASEEALAQIARDINLGRYMFLGRGEEVSSGRE 120

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAK 168
             S+ AD++E+++AA+Y+DGG+         Y+ + A +    K   D KT LQE   A+
Sbjct: 121 RDSLLADMLEAVVAAVYIDGGLTAVKKVFLSYFAKYAKEVVEGKIVFDYKTSLQEITQAR 180

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +   PEY +    GP H  +FTV + +SG   A G   S + AE+ AA   +++  
Sbjct: 181 YRKLPEYVLVNEKGPSHMKKFTVELRLSGKLIAVGEGPSIKEAEKEAARRAIEKLK 236


>gi|197119571|ref|YP_002139998.1| ribonuclease III [Geobacter bemidjiensis Bem]
 gi|197088931|gb|ACH40202.1| ribonuclease III [Geobacter bemidjiensis Bem]
          Length = 232

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 117/221 (52%), Gaps = 2/221 (0%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLL 59
           M       +E R+GY F++R LL +ALTH +  +       +RLEF GD +L  L+S +L
Sbjct: 4   MLHDPLEGIEGRLGYRFSDRGLLVEALTHRTYVNEAGGRDNQRLEFFGDAVLDFLLSDML 63

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              F  ++EGEL+    +LV   +  ++A ELDL   +R+     K       S+ AD  
Sbjct: 64  LVRFPDSREGELTRIRAALVDEASLGKIASELDLGQALRLGRGEEKGGGRQKRSLLADAF 123

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+L+AALYLDGG++ A   V+  +            RDAKTELQE A    G  P Y++ 
Sbjct: 124 EALLAALYLDGGLDPARRVVEALFAPLLSSRDLLSGRDAKTELQETARLFKGELPRYQLK 183

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             +GPDHD RFTV V +      +G+  +K+ AEQ AA   
Sbjct: 184 QVTGPDHDKRFTVEVYLGEELMGEGVGRTKKEAEQDAARAA 224


>gi|237748853|ref|ZP_04579333.1| ribonuclease III [Oxalobacter formigenes OXCC13]
 gi|229380215|gb|EEO30306.1| ribonuclease III [Oxalobacter formigenes OXCC13]
          Length = 277

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 110/223 (49%), Gaps = 8/223 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  +    L++RIGY+F    LL+ ALTH S S  +    ERLEFLGD +L  + +  L+
Sbjct: 11  MMNVNV--LQERIGYSFRQIDLLQTALTHRSFSSHH---NERLEFLGDSLLNCVTAINLY 65

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EG LS   +SLV  +   ++A++LD++SF+R+     K       SI AD +E
Sbjct: 66  ERYVELNEGNLSRLRSSLVRQQALYEIAQKLDMSSFLRLGEGELKAGGFKRPSILADAME 125

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L  A++LD   E     + + +           F +DAKT+LQE+        PEY+V 
Sbjct: 126 ALFGAIFLDSDFETVRRVITQLFTDMMKGLDPETFGKDAKTQLQEYLQGHKLALPEYQVV 185

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220
              G  H+  F +   I        G   S+RA EQ AA + L
Sbjct: 186 ATHGAAHNQEFEIECTIGKFGIHVFGTGSSRRAGEQEAAQKAL 228


>gi|332703537|ref|ZP_08423625.1| Ribonuclease 3 [Desulfovibrio africanus str. Walvis Bay]
 gi|332553686|gb|EGJ50730.1| Ribonuclease 3 [Desulfovibrio africanus str. Walvis Bay]
          Length = 233

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 113/229 (49%), Gaps = 5/229 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57
           M   R + ++  + Y F   + L +ALTHSS ++ ++   ES ERLEFLGD +L L IS 
Sbjct: 3   MDMDRLAAIQAELDYHFGQPAYLARALTHSSYANEHELALESNERLEFLGDAVLELAISE 62

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  F  A EG+L+   + LV  +T +Q AR+L L   I +             S+ AD
Sbjct: 63  CLFQRFPMAHEGQLTRIRSRLVKEKTLAQRARDLGLDRLILLGRGEESQGGRDRDSVLAD 122

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            +E+L+ A++LDGG   A  FV + ++            +D KT LQE    +F + P Y
Sbjct: 123 ALEALLGAVFLDGGYLAAREFVSRTFQDLLPETADLPKVKDYKTRLQEITQQRFKIRPIY 182

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                SGPDH   + V V +   A       S + AEQ AA   ++  G
Sbjct: 183 AQLGTSGPDHARIYEVEVRLPEGASFAATGASLKRAEQNAARLAIEHLG 231


>gi|221135073|ref|ZP_03561376.1| ribonuclease III [Glaciecola sp. HTCC2999]
          Length = 241

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 124/221 (56%), Gaps = 6/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +  L++ I Y F + SLL++ALTH S    +++  ERLEFLGD +LG+++   LF  F +
Sbjct: 21  FVKLQRLIDYQFNDVSLLKQALTHKSA---HRQHNERLEFLGDAVLGMIVGEHLFKAFPN 77

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           + EG+L+   +++V  +T +++A E  L  FI++ +   K       SI ADVVES+I A
Sbjct: 78  SPEGKLTRMRSAIVKGDTLAEIALEKGLGEFIQLGAGELKSGGKQRYSILADVVESIIGA 137

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G+     F+  ++  R  K       +DAKT LQE+  ++    P Y+V    G 
Sbjct: 138 IYLDAGMNQCYDFIHAWFGARIAKLDPDVHPKDAKTRLQEYLQSRGIELPVYEVVDIKGK 197

Query: 184 DHDPRFTVVV-EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH+  FTV    ++   P Q    S++ AEQ+AA   L++ 
Sbjct: 198 DHNQTFTVSCNTVTLSDPIQAQGASRKRAEQIAAQLTLEKL 238


>gi|309776509|ref|ZP_07671491.1| ribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915737|gb|EFP61495.1| ribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
          Length = 227

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 111/227 (48%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIST 57
           M  + +  L+ R   A+++++L+ +AL HSS  + ++      ERLEF+GD +L L  + 
Sbjct: 1   MDTI-FEWLKDR-NIAYSDKTLITQALVHSSYVNEHKSYAHDNERLEFMGDAVLQLWTTK 58

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF       EG+++     LV  E  ++  R+L L  ++ +     K       SI AD
Sbjct: 59  KLFLLEPELSEGQMTTLRAQLVCEEALAEYNRQLGLGKYLMLGVGEEKTGGRQRDSILAD 118

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + E+L+ A++LD G+      +        +    +   D KT+LQE+  +    T  Y+
Sbjct: 119 MFEALLGAVFLDQGMAAIDIILSAVVTPAISRPKSEKVIDYKTKLQEYIQSDSRKTVHYE 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               SGP + P F V+V +  +   +G   SK+ AEQ+AA +  ++ 
Sbjct: 179 TVNVSGPSNKPEFEVIVMLDDINLGRGKGFSKKRAEQMAAKDAFEKM 225


>gi|89898471|ref|YP_515581.1| ribonuclease III [Chlamydophila felis Fe/C-56]
 gi|123483118|sp|Q253V2|RNC_CHLFF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|89331843|dbj|BAE81436.1| ribonuclease III [Chlamydophila felis Fe/C-56]
          Length = 237

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 1   MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLIS 56
           M+  +    +E ++ + F    LL  ALTH S  +      E  ERLEFLGD +L L+++
Sbjct: 1   MNNLINIKEVEAKLKFTFTQPQLLVTALTHPSYRNETVTITEDSERLEFLGDAVLCLIVT 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F S  EG LS    +L++A +C Q    L L  ++ +    R       TS  A
Sbjct: 61  EHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLIGKGERIQNERGRTSAYA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           ++ E+++ A+YLDGG+  A          +         + K  LQ+    +    P Y+
Sbjct: 121 NLFEAILGAVYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKQLRTLPVYQ 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            T    P   P + + V ++     +G   SK+ AE++AA E L
Sbjct: 181 STPWISPQGAPGYHIRVIVNDEIWGEGFALSKKEAEKLAAQEAL 224


>gi|222100439|ref|YP_002535007.1| Ribonuclease 3 [Thermotoga neapolitana DSM 4359]
 gi|254807907|sp|B9K9K8|RNC_THENN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|221572829|gb|ACM23641.1| Ribonuclease 3 [Thermotoga neapolitana DSM 4359]
          Length = 240

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 9/227 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58
              L+KR+G  F +  LL +AL HSS ++  +       ES E+LEFLGD +L L +  +
Sbjct: 9   VEELQKRLGVLFNDEELLFRALCHSSYANEQKQAGREDVESNEKLEFLGDAVLELFVCEI 68

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  +  A+ G+L+   +++ S E  ++V+R L+L  ++ +     K       SI AD 
Sbjct: 69  LYRKYPEAEVGDLARVKSAVASEEVLARVSRRLELGKYLFLGKGEEKTGGRERDSILADA 128

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYK 176
            E+L+AALYLD G +      +  ++    K  K     D KT LQE    +    PEY 
Sbjct: 129 FEALLAALYLDQGYQKIKDLFEDEFESYIEKIMKGEILFDYKTALQEIVQREHKTPPEYV 188

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +        +  F V V ++    A G   +K+ AE+ AA +  ++ 
Sbjct: 189 LVRTEKNGSEKLFVVEVRVNDETLAVGRGRTKKEAEKDAARKAYEKL 235


>gi|163750600|ref|ZP_02157837.1| ribonuclease III [Shewanella benthica KT99]
 gi|161329595|gb|EDQ00586.1| ribonuclease III [Shewanella benthica KT99]
          Length = 230

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 115/227 (50%), Gaps = 6/227 (2%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     L + +GY F  ++LL++ALTH S      +  ERLEFLGD IL ++IS  L
Sbjct: 6   MEPIKNIPRLCRTLGYQFNQQALLDQALTHRSA---NSKHNERLEFLGDSILSIIISDAL 62

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F    EG+LS    +LV  +  +++  E  L  ++++     K       SI AD V
Sbjct: 63  YHQFPKVTEGDLSRMRATLVCGKMLAEIGFEFKLGDYLKLGPGELKSGGFRRESIIADGV 122

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E++I A+YLD   E     V  +++ R A+     ++D KT LQE         P YKVT
Sbjct: 123 EAIIGAIYLDADFETCRARVLSWYESRLAIIEPINQKDPKTLLQELLQGFKKPLPVYKVT 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
              G  H   FTV   +  L     G+  S+R AEQ+AAA+VL+   
Sbjct: 183 DIKGEAHAQTFTVECSVEELKKPLVGVASSRRKAEQIAAAKVLELIK 229


>gi|114320503|ref|YP_742186.1| ribonuclease III [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311783|sp|Q0A8Z1|RNC_ALHEH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|114226897|gb|ABI56696.1| RNAse III [Alkalilimnicola ehrlichii MLHE-1]
          Length = 228

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L+ R+GY F    LL++ALTH S++       ERLEFLGD IL  +I+  L++    A
Sbjct: 6   DALQDRLGYRFRRPELLDEALTHRSVT---GPDNERLEFLGDGILNFVIADELYHRRPDA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG LS    +LV+  T +++ + LD+ + +R+     K       SI AD VE+L  A+
Sbjct: 63  TEGVLSRLRATLVNGRTLAEIGKGLDVGTALRLGGGEMKSGGQRRKSILADAVEALFGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLDGG + +   + + ++ R  +L +    +D KT LQE   A     P Y+V   SG  
Sbjct: 123 YLDGGFDPSRETILRLYRDRLASLPTEAELKDPKTRLQEHLQAGRRPLPRYEVLEVSGQS 182

Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
           HD  F V   +   A  A+G   S+R AEQ AA ++LKR 
Sbjct: 183 HDQTFRVACRLQDAAVTAEGEAGSRRKAEQQAAEQMLKRL 222


>gi|312127786|ref|YP_003992660.1| ribonuclease iii [Caldicellulosiruptor hydrothermalis 108]
 gi|311777805|gb|ADQ07291.1| ribonuclease III [Caldicellulosiruptor hydrothermalis 108]
          Length = 222

 Score =  135 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 1/218 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +EK +GY F +++LL  ALTH S +HS +  YERLEFLGD  L L++S  LF +F   
Sbjct: 2   EEIEKALGYKFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVNFPDL 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V ++T S+VA +L+L + I      + +      SI ADV+E++  A+
Sbjct: 62  SEGELTNIRAAVVCSQTLSEVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +++ G +     +    K    K+   +     + +     +     +         +  
Sbjct: 122 FIESGFDKLEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQREGKKKIVYKDCEIIE-K 180

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             F   + + G   ++G   SK+ A+Q AA + L   G
Sbjct: 181 KYFKSELFVEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218


>gi|312877236|ref|ZP_07737204.1| ribonuclease III [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795950|gb|EFR12311.1| ribonuclease III [Caldicellulosiruptor lactoaceticus 6A]
          Length = 222

 Score =  135 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 1/218 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +E+ +GY F +++LL  ALTH S +HS +  YERLEFLGD  L L +S  LF HF   
Sbjct: 2   EEIERALGYTFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPEL 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V ++T S+VA +L+L + I      + +      SI ADV+E++  A+
Sbjct: 62  SEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +++ G ++    +    K    K+   +     + +     +     +         +  
Sbjct: 122 FIESGFDIVEKIIVNLLKPYIQKAVTGKLFYDYKTKLQEIVQREGNKKIVYKDCEIIE-K 180

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             F   + I G   ++G   SK+ A+Q AA + L   G
Sbjct: 181 KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218


>gi|299769157|ref|YP_003731183.1| ribonuclease III [Acinetobacter sp. DR1]
 gi|298699245|gb|ADI89810.1| ribonuclease III [Acinetobacter sp. DR1]
          Length = 230

 Score =  135 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 115/230 (50%), Gaps = 9/230 (3%)

Query: 1   MSALRYS----TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56
           M   ++      L  RIGY F    LL+ ALTH S+S  ++ +YERLEFLGD +LG++I+
Sbjct: 1   MIKHQFKLSDPRLLSRIGYQFKQLELLQLALTHRSVS--HKYNYERLEFLGDSLLGMIIA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L++ + +  EG L+    +LV  E   ++A +L L+  + +S+   K       SI A
Sbjct: 59  NYLYHAYPNENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILA 118

Query: 117 DVVESLIAALYLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
           D VE++I A+Y+D G                   ++     +D K+ LQE+  A+    P
Sbjct: 119 DTVEAIIGAIYIDSGDLNLLTDIVLKWYVPYLDHIEPTDQLKDPKSRLQEYLQARKKPLP 178

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            Y+V    G      F V   I GL+   G   S+R AEQ AAAE+LK  
Sbjct: 179 VYEVVDIQGDAPHQHFKVECLIDGLSKIHGEGSSRRFAEQAAAAEILKLL 228


>gi|83311357|ref|YP_421621.1| dsRNA-specific ribonuclease [Magnetospirillum magneticum AMB-1]
 gi|82946198|dbj|BAE51062.1| dsRNA-specific ribonuclease [Magnetospirillum magneticum AMB-1]
          Length = 228

 Score =  135 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 83/220 (37%), Positives = 123/220 (55%), Gaps = 4/220 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L   +G+AFA   LL +ALTH S+    +    + YERLEFLGDR+LGL+++ +LF+ 
Sbjct: 6   AELSALLGHAFARPELLAQALTHPSMHQGRKSRTSDPYERLEFLGDRVLGLVVAEMLFSR 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F +  EG L+ R  +LV  E  +++A E+ L   + ++             I AD  E++
Sbjct: 66  FPNEAEGALARRHAALVRREAVARIATEIGLGRCLVLAKGEDDAGGRANPGILADACEAV 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I ALY D G  VA +FV   W+    ++    +DAKT LQEWA  +    P Y+V  + G
Sbjct: 126 IGALYADAGFAVAASFVRSRWEPMMEEALAPPKDAKTGLQEWAQGRGKPLPHYQVLGQEG 185

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P H+P F + V + G+  A G   SKR AEQ AA  +L++
Sbjct: 186 PPHEPIFLIEVSVEGVGSAVGRGASKRVAEQAAAGLLLEQ 225


>gi|120599802|ref|YP_964376.1| ribonuclease III [Shewanella sp. W3-18-1]
 gi|146292262|ref|YP_001182686.1| ribonuclease III [Shewanella putrefaciens CN-32]
 gi|189043352|sp|A4Y4K4|RNC_SHEPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043355|sp|A1RMC7|RNC_SHESW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|120559895|gb|ABM25822.1| RNAse III [Shewanella sp. W3-18-1]
 gi|145563952|gb|ABP74887.1| RNAse III [Shewanella putrefaciens CN-32]
 gi|319425561|gb|ADV53635.1| ribonuclease III [Shewanella putrefaciens 200]
          Length = 226

 Score =  135 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 81/228 (35%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     L + +GY F    LL +ALTH S ++   +  ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNLPRLCRTLGYEFTQIELLTQALTHRSAAN---KHNERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +T + +A+E  L  ++ +     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVRGDTLTIIAQEFKLGDYLYLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  +EV    +  ++ +R  +      ++DAKT LQE+        P+Y+V
Sbjct: 118 EAIIGAIYLDSDLEVCRKLLLTWYAERLAEIQPGVSQKDAKTLLQEYLQGLKKPLPDYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
               G  HD  FTV   I  L+ +  G+  S+R AEQ+AAA+VL+   
Sbjct: 178 INIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAAAQVLELLK 225


>gi|83748443|ref|ZP_00945465.1| Ribonuclease III [Ralstonia solanacearum UW551]
 gi|207725215|ref|YP_002255611.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum MolK2]
 gi|207743590|ref|YP_002259982.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum
           IPO1609]
 gi|83724854|gb|EAP72010.1| Ribonuclease III [Ralstonia solanacearum UW551]
 gi|206590449|emb|CAQ37411.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum MolK2]
 gi|206594989|emb|CAQ61916.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum
           IPO1609]
          Length = 256

 Score =  135 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 110/221 (49%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S S       ERLEFLGD IL   ++ +L+  F
Sbjct: 1   MSLDALQQRLGYRFSKPELLQQALTHRSHS---AMHNERLEFLGDSILNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L   +R+     K       SI AD +E++ 
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + K +     +       +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  H+ +F V   I  L     G   S+RAAEQ AA   L+
Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218


>gi|303231076|ref|ZP_07317816.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
 gi|302514207|gb|EFL56209.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
          Length = 247

 Score =  135 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 103/224 (45%), Gaps = 6/224 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
              L  R+     + S+L+ A TH+S ++ ++       +RLEFLGD +L L+I   LF 
Sbjct: 20  LHELVSRLHIPNIDISILDCAFTHTSYANEHKSKHIHHNQRLEFLGDAVLDLIIGEYLFT 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG L+    + V  ++ + V+R L L  ++ +    +    S   SI AD  ES
Sbjct: 80  TYPDMSEGNLTKIKAATVCEDSLATVSRTLHLGDYLLLGHGEKSSGGSDRKSILADTFES 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI ALY+    +    FV         +   GK  +D KT LQE+          Y +  
Sbjct: 140 LIGALYITTDYKTVMDFVLHQLAPNLKQALEGKRGKDYKTLLQEFVQRDGDKHIVYSLIS 199

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            SGPDH   F + V I G+    G   SK+ AEQ AA   L+R 
Sbjct: 200 ESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAAQLTLERL 243


>gi|239636288|ref|ZP_04677290.1| ribonuclease III [Staphylococcus warneri L37603]
 gi|239597643|gb|EEQ80138.1| ribonuclease III [Staphylococcus warneri L37603]
          Length = 243

 Score =  135 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 62/217 (28%), Positives = 98/217 (45%), Gaps = 5/217 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+ + N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF+      E
Sbjct: 24  LGFEYNNIELYQQAFSHSSFINDFNMDRLDHNERLEFLGDAVLELTVSRYLFDKHPDLPE 83

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+    ++V   +    A ++ L   I +     K       S+ +D  E+ + ALYL
Sbjct: 84  GNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYL 143

Query: 129 DGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           D G++    F DK               D KT+ QE+ H +      Y++    GP H  
Sbjct: 144 DQGLDTVWDFADKIIFPYVEDDELDGVVDFKTQFQEFVHRQNKGDVTYRLIKEEGPAHHR 203

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            FT  V +   A A+G   +K+ +EQ AA    K+  
Sbjct: 204 LFTSEVILEKQAIAEGQGKTKKESEQKAAERAYKQMK 240


>gi|325275444|ref|ZP_08141375.1| ribonuclease III [Pseudomonas sp. TJI-51]
 gi|324099420|gb|EGB97335.1| ribonuclease III [Pseudomonas sp. TJI-51]
          Length = 229

 Score =  135 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 114/229 (49%), Gaps = 10/229 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            +   + LE+++GY F N+  +  ALTH S +     + ERLEFLGD IL  +    LF 
Sbjct: 1   MSASLARLERKLGYTFKNQDQMLLALTHRSYA---GRNNERLEFLGDAILNFVAGEALFE 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS     LV  ET +++AR  DL  ++R+ S   K       SI AD +E+
Sbjct: 58  RFPQAREGQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD  +E A   V  +              +D KT LQE+  ++    P Y+V  
Sbjct: 118 LIGAIYLDADMETARERVLAWLANEFEGLTLVDTNKDPKTRLQEFLQSRSCELPRYEVVD 177

Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             G  H   F V  E+   +    ++G   S+R AEQVAAA  L   G+
Sbjct: 178 IQGEPHCRTFFVECEVVLLNNK--SRGQGVSRRIAEQVAAASALIALGV 224


>gi|332296458|ref|YP_004438381.1| Ribonuclease 3 [Thermodesulfobium narugense DSM 14796]
 gi|332179561|gb|AEE15250.1| Ribonuclease 3 [Thermodesulfobium narugense DSM 14796]
          Length = 228

 Score =  135 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 119/223 (53%), Gaps = 9/223 (4%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLF 60
            +  S LE+ +GY F N+  L  +LTHSS S+++ E   +ERLEFLGD +L L++S  LF
Sbjct: 4   RINLSKLEEDLGYVFTNKKWLMTSLTHSSYSYNHPEVKDFERLEFLGDAVLKLVVSHKLF 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EG++S     LVS +  +++A++L+L +++ + S  R        SI +   E
Sbjct: 64  VLYPEMSEGDMSKLRAYLVSDKHLTKIAKKLNLQNYLLIGSSERTIK----DSILSASFE 119

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +++ A+Y+D  ++     +DK      +K  ++  D+KT LQE   + FGV PEYKV   
Sbjct: 120 AILGAVYMDSSLKQCYKIIDKLMN---IKIEEYEEDSKTVLQELTQSLFGVLPEYKVIDV 176

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GP H P F V + I           SK+ A+  AA + L   
Sbjct: 177 RGPSHSPIFEVQLSIDNKFFYTATGSSKKQAQSEAAKKALNDL 219


>gi|239993708|ref|ZP_04714232.1| ribonuclease III [Alteromonas macleodii ATCC 27126]
          Length = 228

 Score =  135 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +  Y  L K IGY F N +LLE+ALTH S +    +  ERLEFLGD ILG+++   L
Sbjct: 1   MQGIDKYRRLYKAIGYTFTNEALLEQALTHRSAAK---QHNERLEFLGDAILGMIVGETL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F +  EG+L+   ++LV  +T +++A+E  +   + +     K      +SI AD V
Sbjct: 58  FKRFPTVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+++ A+YLD G++     +D+ W+ R          +D+KT LQE+   +    P Y+V
Sbjct: 118 EAILGAIYLDSGMDEVRGVIDRLWETRINKLDPNAHPKDSKTRLQEFLQGRKQALPTYEV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223
              SG DH   F V  ++  L  A      S+R AEQ AA   L++ 
Sbjct: 178 LSISGKDHAQTFEVSCQVESLPEAVVASGNSRRKAEQEAARLTLEKL 224


>gi|45359089|ref|NP_988646.1| ribonuclease III family protein [Methanococcus maripaludis S2]
 gi|45047964|emb|CAF31082.1| Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain
           [Methanococcus maripaludis S2]
          Length = 230

 Score =  135 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 97/227 (42%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M    +  L  ++   F + ++ ++A  HSS  +  +    E  ERLE+LGD +L L+IS
Sbjct: 1   MMK-NFEKLLSKLDIQFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLDLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF   +   EGE+S      V        A++L   +++ +             +I +
Sbjct: 60  EYLFKKENL-SEGEMSKLRAKYVCESALFTYAKKLKFNNYVLLGKGEINSKGYNKPAIVS 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           DV E+ IAA+YLD G++    FV ++      +S K          +        +  Y 
Sbjct: 119 DVFEAFIAAIYLDQGLDSVKKFVYEFIIPIIEESSKELFIDYKTKLQEFPELINKSINYV 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +G  HD +F + V+       +G+  SK+ AE  AA   L + 
Sbjct: 179 NLEETGEAHDKKFVIAVKSGRKILGKGIGKSKKEAEMKAAKNALLKL 225


>gi|254499135|ref|ZP_05111825.1| ribonuclease III [Legionella drancourtii LLAP12]
 gi|254351674|gb|EET10519.1| ribonuclease III [Legionella drancourtii LLAP12]
          Length = 228

 Score =  135 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             +    L +RI Y F   + L++ALTH S+      +YER EFLGD IL  +I+  LF+
Sbjct: 1   MKIDLERLCRRIDYHFEKPAFLKQALTHCSVGSE---NYERFEFLGDSILSFVIANELFH 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F S  EG LS   + LV  +   ++ARELDL  F+ +     K       SI +D +E+
Sbjct: 58  RFPSQSEGHLSRLRSFLVRGDMLVEIARELDLGDFLFLGQGELKSGGFRRASILSDALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + AA++ DGG++ A   + K ++ R          +D+KT LQE+  A+    PEY +  
Sbjct: 118 VFAAVFFDGGVDAAKEVILKLYRSRLEDPNLNDCLKDSKTRLQEYLQAEKIALPEYALIK 177

Query: 180 RSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             G +H+  F +   +       QG   ++R AEQ+AA  +L++ 
Sbjct: 178 VEGDEHEQLFYITCTVEAEKLVTQGEGSNRRKAEQLAAKAMLEQL 222


>gi|149910155|ref|ZP_01898801.1| ribonuclease III [Moritella sp. PE36]
 gi|149806741|gb|EDM66705.1| ribonuclease III [Moritella sp. PE36]
          Length = 223

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 120/225 (53%), Gaps = 6/225 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             +    L+  +GY + +  LL++ALTH S    Y +  ERLEFLGD +LG +IS  LF 
Sbjct: 1   MTIILERLQTVLGYQYQDAGLLQQALTHRSA---YYKHNERLEFLGDSVLGFIISDALFR 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+LS    +LV   T +++ARE +L+  + +     K       SI AD VE+
Sbjct: 58  QFPEVPEGDLSRMRATLVKGLTLAEIAREFELSECLILGPGELKSGGFRRESILADTVEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD  IE     V  ++  R   ++ G  ++DAKT+LQEW   +    P Y+V  
Sbjct: 118 LIGAMYLDSDIEKTRERVLAWYASRLATIEPGIGQKDAKTQLQEWLQGRKQPLPLYQVVE 177

Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
             G  H+  FT+   I GL  P +G   S+R AEQ AA + L++ 
Sbjct: 178 VRGEAHNQEFTIHCVIEGLDHPVEGKGTSRRKAEQEAAQKALEQI 222


>gi|332140432|ref|YP_004426170.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550454|gb|AEA97172.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
          Length = 228

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +  Y  L K IGY F N +LLE+ALTH S +    +  ERLEFLGD ILG++I   L
Sbjct: 1   MQGIDKYLRLYKAIGYTFNNEALLEQALTHRSAAK---QHNERLEFLGDAILGMIIGETL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F +  EG+L+   ++LV  +T +++A+E  +   + +     K      +SI AD V
Sbjct: 58  FKRFPTVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+++ A+YLD G++     +D+ W+ R  +       +D+KT LQE+   +    P Y+V
Sbjct: 118 EAILGAIYLDSGMDEVRGVIDRLWESRINQLDPNAHPKDSKTRLQEFLQGRKQALPTYEV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223
              SG DH   F V  ++  L  A      S+R AEQ AA   L++ 
Sbjct: 178 LSISGKDHAQTFEVCCKVESLPDAVVASGNSRRKAEQEAARLTLEKL 224


>gi|56964064|ref|YP_175795.1| ribonuclease III [Bacillus clausii KSM-K16]
 gi|81365967|sp|Q5WFM6|RNC_BACSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56910307|dbj|BAD64834.1| ribonuclease III [Bacillus clausii KSM-K16]
          Length = 260

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 5/215 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             ++  L  R G  F NR LL +A THSS  +  +       ERLEFLGD +L L +S  
Sbjct: 30  KKQFDDLLVRTGLTFENRKLLIQAFTHSSYVNEQRIFSSSDNERLEFLGDAVLELAVSQY 89

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  + +  EG+++    S+V   + ++ A EL     + +             ++ ADV
Sbjct: 90  LFKTYKNMSEGDMTKLRASIVCEPSLARFAEELQFGKLVLLGKGEEVTGGRTRPALLADV 149

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ I ALY+D G+E    F+ ++   +  +    ++ D K++LQE+          Y +
Sbjct: 150 FEAFIGALYMDQGLEPVFMFLARFMYPKIKEGAFTYKMDFKSQLQEFVQRDNRGQIRYLI 209

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
               GP HD  F   V+++      G   SK+ AE
Sbjct: 210 VQERGPAHDREFVSDVQLNEETIGTGTGRSKKEAE 244


>gi|203284601|ref|YP_002222341.1| ribonuclease III [Borrelia duttonii Ly]
 gi|203288135|ref|YP_002223150.1| ribonuclease III [Borrelia recurrentis A1]
 gi|201084044|gb|ACH93635.1| ribonuclease III [Borrelia duttonii Ly]
 gi|201085355|gb|ACH94929.1| ribonuclease III [Borrelia recurrentis A1]
          Length = 243

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 114/226 (50%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59
             + +     +   F +  LL  +L+HSS ++ + +   + ERLEFLGD +L L+I+  L
Sbjct: 13  KQKLNEFLMGLHIDFNDIYLLNMSLSHSSYANEFDQKYANNERLEFLGDSVLNLIITDYL 72

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  +    EGELS   + +VS ++ S +AREL+L ++I +      +       I AD +
Sbjct: 73  YKFYPDKSEGELSKARSYIVSEDSLSSIARELNLGNYILLGRGEENNDGRNKKGILADAI 132

Query: 120 ESLIAALYLDGGIEV--AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + ALYLDGG                R + +    +D K+ LQE+   K+ ++P YK+
Sbjct: 133 EAFVGALYLDGGFSKASTFVVELFEVHIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 192

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDH+  F V + ++    + G   SK+ AE +AA   LK  
Sbjct: 193 AKELGPDHNKIFCVELYVNDKFVSNGKGKSKKEAEMIAAEMALKNI 238


>gi|314933411|ref|ZP_07840776.1| ribonuclease III [Staphylococcus caprae C87]
 gi|313653561|gb|EFS17318.1| ribonuclease III [Staphylococcus caprae C87]
          Length = 245

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 5/216 (2%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           G++F N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF+      EG
Sbjct: 25  GFSFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPHLPEG 84

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+    ++V   +    A ++DL   I +     K       S+ +D  E+ + ALYLD
Sbjct: 85  NLTKMRATIVCEPSLVIFANKIDLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLD 144

Query: 130 GGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
            G++    F +K               D KT+ QE+ H +      Y++    GP H   
Sbjct: 145 QGLDTVWKFAEKVIFPYVEDDELVGVVDFKTQFQEYVHRQNKGDVTYRLIKEEGPAHHRL 204

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           FT  V +   A A+G   +K+ +EQ AA +  K   
Sbjct: 205 FTSEVILENNAVAEGKGKTKKESEQKAAEQAYKIMK 240


>gi|157960865|ref|YP_001500899.1| ribonuclease III [Shewanella pealeana ATCC 700345]
 gi|189043351|sp|A8H1C7|RNC_SHEPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157845865|gb|ABV86364.1| Ribonuclease III [Shewanella pealeana ATCC 700345]
          Length = 225

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 6/227 (2%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     L + +GY F  ++ L++ALTH S S+   +  ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNIPRLCRTLGYEFNEKAFLDQALTHRSASN---KHNERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F +A EG+LS    +LV  +  +++A E  L  ++++     K       SI AD V
Sbjct: 58  YHQFPAATEGDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E++I A+YLD  IE     V  +++ R  +     ++D KT LQE+        P Y+V 
Sbjct: 118 EAIIGAIYLDSDIENCRQLVLNWYESRLKVIEPINQKDPKTLLQEYLQKYRKPLPVYRVA 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
              G  H+  FTV   +  L+ A  G+  S+R AEQ AAA+VL+   
Sbjct: 178 HTEGDAHEQTFTVECIVEDLSQAVVGVASSRRKAEQSAAAQVLELIK 224


>gi|259503531|ref|ZP_05746433.1| ribonuclease III [Lactobacillus antri DSM 16041]
 gi|259168609|gb|EEW53104.1| ribonuclease III [Lactobacillus antri DSM 16041]
          Length = 232

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 9/227 (3%)

Query: 6   YSTLE----KRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIST 57
              L+    K     F++  LL +A T +S  + +       YER+EFLGD +L L++S 
Sbjct: 2   IEELQDYLAKEFDIHFSDPRLLAEAFTQASYVNEHPNQNLKFYERIEFLGDAVLELIVSE 61

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            ++  +    +G L+    ++V  ++ S+ A+E     +IR+              +  D
Sbjct: 62  YIYKRYPELPQGRLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEELAGARQRPGLLCD 121

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + ES + ALYLD G      FV +    +  +       DAKT LQE+      V  EY 
Sbjct: 122 IFESFVGALYLDQGRPAVEKFVQRVIFPKLDMGWFDHAVDAKTSLQEFLQRDGDVLIEYH 181

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   SG +++P F V V   G   A G   SK+ AE  AA   LK+ 
Sbjct: 182 LLEESGTENNPAFHVDVAADGQVIADGQGSSKKQAEMQAAQRALKKL 228


>gi|223043742|ref|ZP_03613785.1| ribonuclease III [Staphylococcus capitis SK14]
 gi|222442839|gb|EEE48941.1| ribonuclease III [Staphylococcus capitis SK14]
          Length = 245

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 5/216 (2%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           G+ F N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF+      EG
Sbjct: 25  GFNFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPHLPEG 84

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+    ++V   +    A ++DL   I +     K       S+ +D  E+ + ALYLD
Sbjct: 85  NLTKMRATIVCEPSLVIFANKIDLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLD 144

Query: 130 GGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
            G++    F +K               D KT+ QE+ H +      Y++    GP H   
Sbjct: 145 QGLDTVWKFAEKVIFPYVEDDELVGVVDFKTQFQEYVHRQNKGDVTYRLIKEEGPAHHRL 204

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           FT  V +   A A+G   +K+ +EQ AA +  K   
Sbjct: 205 FTSEVILENNAVAEGKGKTKKESEQKAAEQAYKSMK 240


>gi|312984414|ref|ZP_07791749.1| ribonuclease III [Lactobacillus crispatus CTV-05]
 gi|310894189|gb|EFQ43276.1| ribonuclease III [Lactobacillus crispatus CTV-05]
          Length = 229

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 98/230 (42%), Gaps = 10/230 (4%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55
           M + +    L+      F N  LLE+A THSS S+ +       YE+LEFLGD +L L +
Sbjct: 1   MVSTKFLKKLKDDYNIEFNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  ++ H+    EGEL+   +++V  E  S+ A E      I + +   K       ++ 
Sbjct: 61  SNYVYLHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            DV E+   AL+LD G+     F+         K             +    + G     
Sbjct: 121 EDVFEAFNGALFLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIE 180

Query: 176 KVTFRSG--PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                    P H   F V ++I+G   ++G   +K+AAEQ AA   L++ 
Sbjct: 181 YTVISESQLPSH---FVVELKINGKVESKGEGHNKKAAEQQAAKVALQKL 227


>gi|295693172|ref|YP_003601782.1| ribonuclease iii [Lactobacillus crispatus ST1]
 gi|295031278|emb|CBL50757.1| Ribonuclease III [Lactobacillus crispatus ST1]
          Length = 229

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 98/230 (42%), Gaps = 10/230 (4%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55
           M + +    L+      F +  LLE+A THSS S+ +       YE+LEFLGD +L L +
Sbjct: 1   MVSTKFLKKLKDEYNIVFNDEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  ++ H+    EGEL+   +++V  E  S+ A E      I + +   K       ++ 
Sbjct: 61  SNYVYLHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            DV E+   AL+LD G+     F+         K             +    + G     
Sbjct: 121 EDVFEAFNGALFLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIE 180

Query: 176 KVTFRSG--PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                    P H   F V ++I+G   ++G   +K+AAEQ AA   L++ 
Sbjct: 181 YTVISESQLPSH---FVVELKINGKVESKGEGHNKKAAEQQAAKVALQKL 227


>gi|73662845|ref|YP_301626.1| ribonuclease III [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|90101648|sp|Q49X17|RNC_STAS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|72495360|dbj|BAE18681.1| dsRNA-specific ribonuclease RNase III [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 244

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 100/232 (43%), Gaps = 8/232 (3%)

Query: 1   MSALRYSTLEKR---IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGL 53
           M     +  EK+   +   F    L ++A +HSS  + +     +  ERLEFLGD +L L
Sbjct: 9   MVQTFQNKFEKKMQELNLDFNRVDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLEL 68

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            +S  LF+ +    EG L+    ++V   +    A ++ L   I +     K       S
Sbjct: 69  TVSRYLFDKYPELPEGNLTKMRATIVCEPSLVIFANKIQLNDLILLGKGEEKTGGRTRPS 128

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVT 172
           + +D  E+ + ALYLD G+E    F ++               D KT+ QE+ H +    
Sbjct: 129 LVSDAFEAFVGALYLDQGLEAVWQFSEQIIFPYVEDDELDGVVDFKTQFQEYVHRQNKGD 188

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             Y++    GP H   FT  V +   A A+G   +K+ +EQ AA    K   
Sbjct: 189 VTYRLINEEGPAHHRLFTSEVILEEDAVAEGKGKTKKESEQKAAERAYKILK 240


>gi|303229664|ref|ZP_07316452.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
 gi|302515789|gb|EFL57743.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
          Length = 247

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 103/224 (45%), Gaps = 6/224 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
              L  R+     + S+L+ A TH+S ++ ++       +RLEFLGD +L L+I   LF 
Sbjct: 20  LHELVSRLHIPNIDISILDCAFTHTSYANEHKFKHIHHNQRLEFLGDAVLDLIIGEYLFT 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG L+    + V  ++ + V+R L L  ++ +    +    S   SI AD  ES
Sbjct: 80  TYPDMSEGNLTKIKAATVCEDSLATVSRTLHLGDYLLLGHGEKSSGGSDRKSILADTFES 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI ALY+    +    FV         +   GK  +D KT LQE+          Y +  
Sbjct: 140 LIGALYITTDYKTVMDFVLHQLAPNLKQALEGKRGKDYKTLLQEFVQRDGDKHIVYSLIS 199

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            SGPDH   F + V I G+    G   SK+ AEQ AA   L+R 
Sbjct: 200 ESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAAQLTLERL 243


>gi|332653520|ref|ZP_08419265.1| ribonuclease III [Ruminococcaceae bacterium D16]
 gi|332518666|gb|EGJ48269.1| ribonuclease III [Ruminococcaceae bacterium D16]
          Length = 226

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 83/206 (40%), Positives = 119/206 (57%), Gaps = 3/206 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
           +TLE+++GY F NR LLE ALTHSS ++  +   +S ERLEFLGD ILG++++  L+   
Sbjct: 2   TTLEEKLGYQFQNRELLENALTHSSCANESRGKLQSNERLEFLGDSILGMVVADHLYRGH 61

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EGEL+    +LV  E+  +VA+ LDL S++ +             SIQAD VE+++
Sbjct: 62  PDLPEGELTRVRAALVCEESLVEVAQALDLGSYLLLGKGEEAGGGRTRPSIQADAVEAVL 121

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AA+YLDGGI  A   + KY   R ++     RD KT LQE    + G   +Y++    GP
Sbjct: 122 AAVYLDGGIGSARKIIQKYILCREIEGITSPRDYKTALQELVQRESGQVLKYRLVGSQGP 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
           DH  RF V V+++G     G   SK+
Sbjct: 182 DHAKRFFVDVDLNGEPVGSGEGHSKK 207


>gi|114797101|ref|YP_759604.1| ribonuclease III [Hyphomonas neptunium ATCC 15444]
 gi|114737275|gb|ABI75400.1| ribonuclease III [Hyphomonas neptunium ATCC 15444]
          Length = 234

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
               ++ IG+ F + ++LE+ALTH S      +    S +RLEFLGDR+L L+I+  L  
Sbjct: 10  LKEAQEIIGFKFKDAAILERALTHPSAIPPSGDTVKLSNQRLEFLGDRVLNLIIAERLIE 69

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              S  EG+L+ R N LV    C++  R L L  FI +S            S   D  E+
Sbjct: 70  RRQSDSEGDLAPRLNRLVKKGACAEAMRFLGLQRFILLSESEVAAGGHDRESTLGDACEA 129

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +IAA+Y +GG+  A  F+++ W  +        +D KT LQEWA  +    P+Y VT RS
Sbjct: 130 VIAAIYQEGGLAAARKFIERAWAPQFENVPAETKDPKTLLQEWAQGQGHPLPDYVVTGRS 189

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GPDH P++ V V ++ +  A     SKR AE+ AAA +L+  
Sbjct: 190 GPDHAPQYEVEVRLA-VGKATATGPSKREAERHAAALMLRTL 230


>gi|254455346|ref|ZP_05068775.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082348|gb|EDZ59774.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211]
          Length = 220

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 121/221 (54%), Gaps = 3/221 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
               Y +LEK+I   F N +LL ++LTH S  H+  ++ E++EFLGDR+LGL+I+  L  
Sbjct: 1   MKKNYQSLEKKINIKFKNTNLLIQSLTHKS--HNSLKNNEKIEFLGDRVLGLVIAKKLLE 58

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +   KEG L  +F SLV+  TC ++A+ ++L  +I  + +L          I +D  E+
Sbjct: 59  IYPDEKEGILDKKFASLVNKRTCLEIAKNINLEKYIL-TFNLNNKKIKIEDKIISDCCEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           LI ALYLD G+ +    +   WK    KS   + DAKT+LQE A   F   P YK+   +
Sbjct: 118 LIGALYLDKGLNITEKIILDLWKNHIKKSVVTQIDAKTKLQELALKNFKKLPIYKLISNT 177

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GP H P F V V++        +  SK+ AEQ AA E LK 
Sbjct: 178 GPRHKPLFKVGVKLPNTKYFIALGKSKKDAEQNAAIECLKN 218


>gi|327538797|gb|EGF25444.1| ribonuclease III [Rhodopirellula baltica WH47]
          Length = 297

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 3/221 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +    ++ +GY F +  LL  ALTH+S +     S ERLEFLGD +LGL +   LFN + 
Sbjct: 64  KIERCQEILGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCEWLFNEYP 123

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+   +++VS  +C +VA +L L   + V   +     S+  S+ +DV E++IA
Sbjct: 124 EYSEGDLTKIKSAVVSRRSCGKVACKLGLDQCLIVGRGV-TRNRSYPKSLVSDVFEAVIA 182

Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALY+DGG E+    +  +  +        +   + K+ LQ++A  +   TP YK+   +G
Sbjct: 183 ALYIDGGPEIVRDRLKLWLAEEVNLAVDTQGSGNHKSVLQQFAQRELSATPVYKLIRETG 242

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH   F +   +     A     +K+ AEQ AAA  L   
Sbjct: 243 PDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAANALAEL 283


>gi|293402241|ref|ZP_06646379.1| ribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304348|gb|EFE45599.1| ribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 227

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 113/228 (49%), Gaps = 8/228 (3%)

Query: 1   MSALRYSTLE-KRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIS 56
           M+ + +  LE KRI Y   ++ L+ +AL HSS  + ++      ERLEF+GD +L L  +
Sbjct: 1   MNTI-FDWLESKRIPYT--DKELIRQALVHSSYVNEHKTFAHDNERLEFMGDAVLQLWST 57

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
           T LF       EG+++     LV  E  ++  R+L L  ++ +     K       SI A
Sbjct: 58  TKLFKLTPELSEGQMTTLRAQLVCEEALAEYNRKLGLGRYLLLGVGEEKTGGRERDSILA 117

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+++ A+YLD G++     +++           +   D KT+LQE+  +    T  Y
Sbjct: 118 DMFEAVLGAIYLDSGMDSINVILEEVLTPAITQPKSEKVIDYKTKLQEYIQSDSRKTVHY 177

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    SGP + P F V V +  +   +G   SK+ AEQ+AA +  ++ 
Sbjct: 178 ETIHVSGPSNKPEFEVAVMLDDITLGRGKGFSKKRAEQMAAKDAFEKM 225


>gi|77416567|sp|Q7UGZ7|RNC_RHOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 266

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 3/221 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +    ++ +GY F +  LL  ALTH+S +     S ERLEFLGD +LGL +   LFN + 
Sbjct: 33  KIERCQEILGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCEWLFNEYP 92

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+   +++VS  +C +VA +L L   + V   +     S+  S+ +DV E++IA
Sbjct: 93  EYSEGDLTKIKSAVVSRRSCGKVACKLGLDQCLIVGRGV-TRNRSYPKSLVSDVFEAVIA 151

Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALY+DGG E+    +  +  +        +   + K+ LQ++A  +   TP YK+   +G
Sbjct: 152 ALYIDGGPEIVRDRLKLWLAEEVNLAVDTQGSGNHKSVLQQFAQRELSATPVYKLIRETG 211

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH   F +   +     A     +K+ AEQ AAA  L   
Sbjct: 212 PDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAANALAEL 252


>gi|32473407|ref|NP_866401.1| ribonuclease III [Rhodopirellula baltica SH 1]
 gi|32398087|emb|CAD78182.1| ribonuclease III [Rhodopirellula baltica SH 1]
          Length = 297

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 3/221 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +    ++ +GY F +  LL  ALTH+S +     S ERLEFLGD +LGL +   LFN + 
Sbjct: 64  KIERCQEILGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCEWLFNEYP 123

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+   +++VS  +C +VA +L L   + V   +     S+  S+ +DV E++IA
Sbjct: 124 EYSEGDLTKIKSAVVSRRSCGKVACKLGLDQCLIVGRGV-TRNRSYPKSLVSDVFEAVIA 182

Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALY+DGG E+    +  +  +        +   + K+ LQ++A  +   TP YK+   +G
Sbjct: 183 ALYIDGGPEIVRDRLKLWLAEEVNLAVDTQGSGNHKSVLQQFAQRELSATPVYKLIRETG 242

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH   F +   +     A     +K+ AEQ AAA  L   
Sbjct: 243 PDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAANALAEL 283


>gi|119503988|ref|ZP_01626069.1| ribonuclease III [marine gamma proteobacterium HTCC2080]
 gi|119459991|gb|EAW41085.1| ribonuclease III [marine gamma proteobacterium HTCC2080]
          Length = 229

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 108/222 (48%), Gaps = 5/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +  +L+ R+GY+F +  +L+ ALTH S     + + ERLEFLGD  +  +I+  L+  F 
Sbjct: 9   QLLSLQNRLGYSFQDLQILKLALTHRSAG---RTNNERLEFLGDSFVNHVIAQRLYLQFP 65

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG+L+   + LV     + +  +  L   + +    RK       SI AD VE++  
Sbjct: 66  KASEGQLTRLRSKLVRGTFLAALGEKYALGECLTLGVGERKSGGRHRASILADTVEAIAG 125

Query: 125 ALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A+ LD G E A   +  ++            +D+KT LQEW  A+    P Y +    GP
Sbjct: 126 AMLLDAGYENAAPVILHWFADALGELQVDGDKDSKTLLQEWLQARNLPLPSYDLVSVEGP 185

Query: 184 DHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
           DH   F VV  I+G   A  G   S+R AEQ AA+  +   G
Sbjct: 186 DHAQEFEVVCLINGQKNAFSGRGSSRRNAEQQAASVAIGELG 227


>gi|326794405|ref|YP_004312225.1| ribonuclease 3 [Marinomonas mediterranea MMB-1]
 gi|326545169|gb|ADZ90389.1| Ribonuclease 3 [Marinomonas mediterranea MMB-1]
          Length = 227

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 93/226 (41%), Positives = 126/226 (55%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS+L Y  L +RIGY FA+  LLE ALTH S      ++ ERLEFLGD IL  +I+  LF
Sbjct: 1   MSSL-YQKLCRRIGYFFADLGLLELALTHRSYG---GKNNERLEFLGDSILNYVIAEDLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F  AKEGELS    SLV  +T +++ARE  L  F+++ +   K       SI AD VE
Sbjct: 57  HRFPKAKEGELSRLRASLVKGDTLAELAREFQLGDFLKLGAGELKSGGFRRDSILADTVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            +I A+YLD G++     + +++K R   +      +DAKT LQE+  A+    P+Y+V 
Sbjct: 117 GIIGAMYLDAGMDTCKNQILEWYKTRLDATSLNVVTKDAKTRLQEYLQARKHGLPQYEVV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223
              G  HD  F V   I     A +G   S+R AEQ AAAE L + 
Sbjct: 177 NIDGEPHDQTFFVHCHIEIFDQAVEGKGNSRRIAEQNAAAEALSQL 222


>gi|300704607|ref|YP_003746210.1| ribonuclease III (RNAse III) [Ralstonia solanacearum CFBP2957]
 gi|299072271|emb|CBJ43604.1| Ribonuclease III (RNase III) [Ralstonia solanacearum CFBP2957]
          Length = 256

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 113/221 (51%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+ + LL++ALTH S S ++    ERLEFLGD IL   ++ +L+  F
Sbjct: 1   MSLDALQQRLGYRFSKQELLQQALTHRSHSATH---NERLEFLGDSILNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L   +R+     K       SI AD +E++ 
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + K +     +       +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  H+ +F V   I  L     G   S+RAAEQ AA   L+
Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218


>gi|241662605|ref|YP_002980965.1| ribonuclease III [Ralstonia pickettii 12D]
 gi|309781187|ref|ZP_07675924.1| ribonuclease III [Ralstonia sp. 5_7_47FAA]
 gi|240864632|gb|ACS62293.1| ribonuclease III [Ralstonia pickettii 12D]
 gi|308920008|gb|EFP65668.1| ribonuclease III [Ralstonia sp. 5_7_47FAA]
          Length = 256

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 109/221 (49%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S S       ERLEFLGD IL   ++ +L+  F
Sbjct: 1   MSLDALQQRLGYRFSKPELLQQALTHRSHS---AMHNERLEFLGDSILNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L   +R+     K       SI AD +E++ 
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + K +     +       +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPLYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  H+ +F V   I  L     G   S+RAAEQ AA   L+
Sbjct: 178 GAAHNQQFEVECSIPKLEIRVSGSGASRRAAEQSAAKLALE 218


>gi|332992353|gb|AEF02408.1| ribonuclease III [Alteromonas sp. SN2]
          Length = 229

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +  Y  L K +GY F N +LLE+ALTH S +    +  ERLEFLGD ILG++I   L
Sbjct: 1   MQGIDKYIRLSKALGYTFNNVALLEQALTHRSAAK---QHNERLEFLGDAILGMVIGETL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F    EG+L+   ++LV  +T +++ARE  +   + +     K      +SI AD V
Sbjct: 58  FKRFPDVPEGKLTRMRSTLVKGDTLAELAREASMGELLHLGPGELKSGGHRRSSILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+++ A+YLD G+E     +   W+ R          +D+KT LQE+   +    P Y+V
Sbjct: 118 EAVLGAIYLDSGMEEVCNVIYHLWESRIEALNPNAHPKDSKTRLQEYLQGRKLPLPSYEV 177

Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              SG DH   F V   ++ L  P      S+R AEQ AA   L+  
Sbjct: 178 ISISGKDHAQVFEVSCTVTTLDKPVSASGNSRRKAEQEAARLTLETL 224


>gi|40063418|gb|AAR38229.1| ribonuclease III [uncultured marine bacterium 580]
          Length = 231

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 111/222 (50%), Gaps = 6/222 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LEK I Y F +  LL  A+TH S S     + ERLEFLGD IL  +++ LLF
Sbjct: 1   METKELKILEKSIKYKFKDDKLLALAMTHRSHS---GMNNERLEFLGDSILNFVVADLLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F+   EG+LS   + LV  E  S++  EL +  F+ +     K       SI AD  E
Sbjct: 58  KKFNDLDEGDLSRLRSQLVKEEPLSKLGNELKIGDFLNLGVGELKSSGWRRPSILADAFE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+++DGG++ A  F++  +      +   +  +D KT LQE+  A+    P Y+V 
Sbjct: 118 ALIGAIFIDGGMKSAYKFIEDSYADLIEKINPKEIYKDPKTILQEFLQAQKVPLPSYEVI 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219
              G  H+  FTV   +S      +G   S++ AEQ AA E 
Sbjct: 178 NVEGEAHNQLFTVTCVVSKFDVKVEGGGRSRKIAEQEAAKEA 219


>gi|255320780|ref|ZP_05361955.1| ribonuclease III [Acinetobacter radioresistens SK82]
 gi|262379444|ref|ZP_06072600.1| ribonuclease III [Acinetobacter radioresistens SH164]
 gi|255302157|gb|EET81399.1| ribonuclease III [Acinetobacter radioresistens SK82]
 gi|262298901|gb|EEY86814.1| ribonuclease III [Acinetobacter radioresistens SH164]
          Length = 230

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 110/219 (50%), Gaps = 5/219 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L  RIGY F    LL+ ALTH S+S  ++ +YERLEFLGD +LG++I+  L++ +    
Sbjct: 12  RLPSRIGYQFKQPELLQLALTHRSVS--HKYNYERLEFLGDSLLGMIIANYLYHAYPFEN 69

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+Y
Sbjct: 70  EGRLTRMRATLVRQEALGKIANDLKLSQCLILSTGELKSGGHHRESILADTVEAIIGAIY 129

Query: 128 LDG---GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +D     I               ++     +D K+ LQE+  A+    P Y+V    G  
Sbjct: 130 IDCGELKILQDIVLKWYGPYLNNIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDA 189

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +  F V   +  L    G   S+R AEQ AAAE+LK  
Sbjct: 190 PNQHFKVECSVDSLPKFIGEGSSRRFAEQAAAAEILKLL 228


>gi|15617978|ref|NP_224262.1| ribonuclease III [Chlamydophila pneumoniae CWL029]
 gi|15835590|ref|NP_300114.1| ribonuclease III [Chlamydophila pneumoniae J138]
 gi|16752990|ref|NP_445263.1| ribonuclease III [Chlamydophila pneumoniae AR39]
 gi|7531191|sp|Q9Z9C7|RNC_CHLPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|4376309|gb|AAD18207.1| Ribonuclease III [Chlamydophila pneumoniae CWL029]
 gi|7189635|gb|AAF38526.1| ribonuclease III [Chlamydophila pneumoniae AR39]
 gi|8978428|dbj|BAA98265.1| ribonuclease III [Chlamydophila pneumoniae J138]
          Length = 237

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 3/224 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60
           +  + +E ++ + F    LLE ALTH S  +      E  ERLEFLGD +LGL+++  LF
Sbjct: 5   IDITAIEAKLNFTFTQPKLLEIALTHPSYKNESAVQIEDSERLEFLGDAVLGLIVTEHLF 64

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F S  EG LS    SLV+A+ C +    L +  ++ +    +        S  A++ E
Sbjct: 65  LLFPSMDEGTLSTARASLVNAKACCRYTTMLGIGDYLLIGKGEKIQSERGRLSAYANLFE 124

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           S++ A+YLDGG+  A          R         + K  LQ++   +F V P Y+ T  
Sbjct: 125 SILGAVYLDGGLSPARKLTVPLLPPREEILPLMSGNPKNLLQQFTQKQFRVLPVYQSTAV 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +    +  + + V ++     +G   SK+ AE++AA + L   G
Sbjct: 185 TDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQQALDTYG 228


>gi|197105333|ref|YP_002130710.1| ribonuclease III [Phenylobacterium zucineum HLK1]
 gi|238690159|sp|B4RCU4|RNC_PHEZH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|196478753|gb|ACG78281.1| ribonuclease III [Phenylobacterium zucineum HLK1]
          Length = 238

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 87/223 (39%), Positives = 127/223 (56%), Gaps = 4/223 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
            + LE+RIGY F +R LLE+ALTH+S+    +     ERLEFLGDR+L L  +  L    
Sbjct: 8   VAELERRIGYVFTDRDLLERALTHASVGDGARAVRHNERLEFLGDRVLNLCAAERLMALD 67

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A+EGE+S    SLV+   C++ A+   L   +R+S+   K       ++  D  E+LI
Sbjct: 68  PDAREGEMSRLLASLVNYHACARAAKRAGLQEALRLSASATKVGARKSDAVLGDACEALI 127

Query: 124 AALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AALY+DGG+E A   F+  + ++ A       +D KT+LQEW        P Y++  + G
Sbjct: 128 AALYIDGGLETARAFFLKFWDEEFARLDEPRAKDPKTQLQEWVQGMGLPLPTYEIVSQEG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV-LKREG 224
           P H P FTV V+++G    +G   S++AAE+ AA  + LKREG
Sbjct: 188 PPHAPSFTVEVQVAGFGAERGEGRSRQAAEKAAAQCMLLKREG 230


>gi|284032688|ref|YP_003382619.1| ribonuclease III [Kribbella flavida DSM 17836]
 gi|283811981|gb|ADB33820.1| ribonuclease III [Kribbella flavida DSM 17836]
          Length = 249

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 14/236 (5%)

Query: 1   MSALR----------YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGD 48
           M+++           Y+ L +R+G + A+  LLE A TH S ++      + ERLEFLGD
Sbjct: 1   MNSVNPEPASGHGGLYAELNQRLGVSLAD-ELLEHAFTHRSFAYENGGLPTNERLEFLGD 59

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
            +LG++++  LF +     EG L+    ++V+    + VAR+L L  ++R+         
Sbjct: 60  SVLGVIVTESLFRNHPDLSEGRLAKLRAAVVNMRALAGVARDLKLGKYLRLGRGEEATGG 119

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHA 167
              +SI AD VE+LI A+YLD G EVAG  V   +      S +           +   A
Sbjct: 120 RDKSSILADCVEALIGAVYLDRGFEVAGRVVHTLFDDLMESSARLGAGLDWKTSLQELVA 179

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           + GV     V   SGPDH   F   V I       G+  SK+ AEQ AA    K  
Sbjct: 180 QLGVGVPEYVIAESGPDHAKTFEARVRIGSDTYGHGIGRSKKEAEQQAAETAWKAL 235


>gi|330836489|ref|YP_004411130.1| RNAse III [Spirochaeta coccoides DSM 17374]
 gi|329748392|gb|AEC01748.1| RNAse III [Spirochaeta coccoides DSM 17374]
          Length = 256

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 108/220 (49%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
            +K  G  F +  LL  A TH S  +  +   ++ ERLEFLGD +LG ++S  LF +  +
Sbjct: 28  FQKNAGIKFHSLELLNLAFTHRSFFNESRHEVDNNERLEFLGDSVLGFMVSEWLFLNLPA 87

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+ S   + +V+ ++ +++A  L +  F+ +      +      +I AD +E++ AA
Sbjct: 88  RHEGDFSKIRSYVVNEDSLAEIALSLHVDRFLIIGKGEEMNGGRTKKTILADCMEAIFAA 147

Query: 126 LYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            YLD G++     + ++     +     + ++D KT LQE    ++   P Y++   SGP
Sbjct: 148 YYLDAGLKPVQELILRHLVPAIMVVLDDRHKKDYKTLLQEIIQKRYHKYPVYELLRTSGP 207

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +HD  F V V + G         +K+ AEQ AA    +  
Sbjct: 208 EHDRTFWVQVNVVGNIFGPASGANKKEAEQNAACAAYEAL 247


>gi|222444593|ref|ZP_03607108.1| hypothetical protein METSMIALI_00205 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350869|ref|ZP_05976286.1| ribonuclease III [Methanobrevibacter smithii DSM 2374]
 gi|222434158|gb|EEE41323.1| hypothetical protein METSMIALI_00205 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860206|gb|EFC92504.1| ribonuclease III [Methanobrevibacter smithii DSM 2374]
          Length = 223

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 3/220 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            L ++      +R L + A TH S    H    +YERLEFLGD +L +++S  L+  +  
Sbjct: 2   NLLEKFNIVPKDRHLYDVAFTHGSYGTKHGLDYTYERLEFLGDSVLNMIVSEYLYKQYPD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG+L+    + V        + EL L   I++  D  K   + + SI ADV ES + A
Sbjct: 62  YEEGKLTKLRANYVCQTALIYYSHELGLDKHIKIYGDDSKITENEVLSITADVFESFLGA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           ++LD GIE A  ++ K           F  D K+ ++E+  A+             G  H
Sbjct: 122 IFLDQGIEFAKDYISKIIFPYIDAKKVFFFDYKSVIKEYGDAQEVDIEYKI-IDECGVPH 180

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           +  F + + I G     G   +K+ AEQ A+ + +K+  I
Sbjct: 181 NKTFIISILIDGKEMGVGKGKNKKEAEQAASKQAMKKLKI 220


>gi|293609826|ref|ZP_06692128.1| ribonuclease 3 [Acinetobacter sp. SH024]
 gi|292828278|gb|EFF86641.1| ribonuclease 3 [Acinetobacter sp. SH024]
          Length = 230

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 114/230 (49%), Gaps = 9/230 (3%)

Query: 1   MSALRYS----TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56
           M   ++      L  RIGY F    LL+ ALTH S+S  ++ +YERLEFLGD +LG++I+
Sbjct: 1   MIKHQFKLSDPRLLSRIGYQFKQLELLQLALTHRSVS--HKYNYERLEFLGDSLLGMIIA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L++ + +  EG L+    +LV  E   ++A +L L+  + +S+   K       SI A
Sbjct: 59  NYLYHAYPNENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILA 118

Query: 117 DVVESLIAALYLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
           D VE++I A+YLD G                   ++     +D K+ LQE+  A+    P
Sbjct: 119 DTVEAIIGAIYLDSGDLNLLKDIVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARKKPLP 178

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            Y+V    G      F V   + GL    G   S+R AEQ AAAE+LK  
Sbjct: 179 VYEVVDIQGDAPHQHFKVECVVDGLPKIYGEGSSRRFAEQAAAAEILKLL 228


>gi|257866576|ref|ZP_05646229.1| ribonuclease III [Enterococcus casseliflavus EC30]
 gi|257872908|ref|ZP_05652561.1| ribonuclease III [Enterococcus casseliflavus EC10]
 gi|257876180|ref|ZP_05655833.1| ribonuclease III [Enterococcus casseliflavus EC20]
 gi|325567330|ref|ZP_08143997.1| ribonuclease III [Enterococcus casseliflavus ATCC 12755]
 gi|257800534|gb|EEV29562.1| ribonuclease III [Enterococcus casseliflavus EC30]
 gi|257807072|gb|EEV35894.1| ribonuclease III [Enterococcus casseliflavus EC10]
 gi|257810346|gb|EEV39166.1| ribonuclease III [Enterococcus casseliflavus EC20]
 gi|325158763|gb|EGC70909.1| ribonuclease III [Enterococcus casseliflavus ATCC 12755]
          Length = 230

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 5/218 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M+      L+++    F +  LLE+A THSS  + ++       ERLEFLGD +L L++S
Sbjct: 1   MNTQLTKELKEKFDIVFHDVDLLEQAFTHSSYVNEHRNLHLSDNERLEFLGDAVLELIVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+       EG+L+    ++V  ++ S  A++     +IR+             S+  
Sbjct: 61  RYLYRELPDLPEGKLTKLRAAIVREDSLSMFAKDCRFDEYIRLGKGEENSGGRKRPSLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD G+E    F+ K    +          D KT LQE       V+  Y
Sbjct: 121 DLFEAFLGALYLDQGLESVSGFLTKVVFPKVKAGAFSHEMDHKTRLQEVLQRGGDVSINY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           ++   +GP H+  F   V        +G   SK+ +EQ
Sbjct: 181 RLIKEAGPAHERIFWTEVYCDDTLIGKGQGKSKKLSEQ 218


>gi|254448879|ref|ZP_05062335.1| ribonuclease III [gamma proteobacterium HTCC5015]
 gi|198261569|gb|EDY85858.1| ribonuclease III [gamma proteobacterium HTCC5015]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 113/221 (51%), Gaps = 6/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            STL+  + Y F+N  LLE A+TH S S +   + ERLEFLGD IL   ++  LF  F  
Sbjct: 2   LSTLQSTLNYTFSNGDLLEVAVTHRSASKT---NNERLEFLGDSILNFTVAAELFERFPE 58

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    SLV   + +  A+++DL  F+++     K       SI AD VE++I A
Sbjct: 59  RPEGDLSRLRASLVDKSSLAAHAKKMDLGPFLKLGGGELKSGGWRRDSILADAVEAIIGA 118

Query: 126 LYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGGIE A  F+   +        +    +DAKT LQEW   +    P+Y++   SG 
Sbjct: 119 IYLDGGIESAQQFIRDLYDGDFESLPTANELKDAKTRLQEWLQGRHYALPQYEMVEVSGK 178

Query: 184 DHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
            H+ +FTV   I            S+R AEQ AA   L + 
Sbjct: 179 PHEQQFTVSCYIDSHDVQVNATGRSRRKAEQAAAETALAQL 219


>gi|262368562|ref|ZP_06061891.1| dsRNA-specific ribonuclease [Acinetobacter johnsonii SH046]
 gi|262316240|gb|EEY97278.1| dsRNA-specific ribonuclease [Acinetobacter johnsonii SH046]
          Length = 230

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 112/220 (50%), Gaps = 5/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  RIGY F    LL+ ALTH S+S  ++ +YERLEFLGD +LG++I+  L+  + + 
Sbjct: 11  ARLASRIGYQFKQPELLQLALTHRSVS--HKYNYERLEFLGDSLLGMIIANYLYKAYPTE 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VES+I A+
Sbjct: 69  NEGRLTRMRATLVRQEALGKIANDLKLSQSLILSTGELKSGGHHRESILADTVESIIGAI 128

Query: 127 YLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           Y+D                     ++     +D K+ LQE+  A+    P Y V    G 
Sbjct: 129 YVDCSDLTVLEPIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKALPVYDVVDIQGD 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +  F V  ++ GL+   G   S+R AEQ AAA++LK  
Sbjct: 189 APNQHFKVECKVDGLSVVNGEGTSRRFAEQAAAADILKLL 228


>gi|119383173|ref|YP_914229.1| ribonuclease III [Paracoccus denitrificans PD1222]
 gi|119372940|gb|ABL68533.1| RNAse III [Paracoccus denitrificans PD1222]
          Length = 241

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 124/225 (55%), Gaps = 2/225 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +       +R+G+ F+   LL +ALTH SI+ + +   +RLEFLGDR+LGL I+  L
Sbjct: 13  MKISADLRAFSERLGHEFSRPELLRRALTHGSIASTTRPDNQRLEFLGDRVLGLTIAEAL 72

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F+   +A EG+L+ R+N+LV  ETC+ +ARE+ L   +++             ++ AD +
Sbjct: 73  FSADRAATEGQLAPRYNALVKGETCAAIAREIGLGEVLKLGRSEMMSGGRRKEALLADAM 132

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+YLD G E A   V   W  R        RDAKT LQEWA A+    P Y    
Sbjct: 133 EAVIAAVYLDAGFETARGVVLGLWSDRLANVETDARDAKTALQEWAQAQGMSPPRYVQIA 192

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKRE 223
           R+GPDH P F + V +     A      +KR+ EQ AA  +L++ 
Sbjct: 193 RTGPDHAPEFQITVRLDDGREASASGKGTKRSIEQAAATAMLEQI 237


>gi|269302927|gb|ACZ33027.1| ribonuclease III [Chlamydophila pneumoniae LPCoLN]
          Length = 237

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 3/224 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60
           +  + +E ++ + F    LLE ALTH S  +      E  ERLEFLGD +LGL+++  LF
Sbjct: 5   IDITAIEAKLNFTFTQPKLLEIALTHPSYKNESAVQIEDSERLEFLGDAVLGLIVTEHLF 64

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F S  EG LS    SLV+A+ C +    L +  ++ +    +        S  A++ E
Sbjct: 65  LLFPSMDEGTLSTARASLVNAKACCRYTTTLGIGDYLLIGKGEKIQSERGRLSAYANLFE 124

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           S++ A+YLDGG+  A          R         + K  LQ++   +F V P Y+ T  
Sbjct: 125 SILGAVYLDGGLSPARKLTVPLLPPREEILPLMSGNPKNLLQQFTQKQFRVLPVYQSTAV 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +    +  + + V ++     +G   SK+ AE++AA + L   G
Sbjct: 185 TDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQQALDTYG 228


>gi|226313209|ref|YP_002773103.1| ribonuclease III [Brevibacillus brevis NBRC 100599]
 gi|226096157|dbj|BAH44599.1| ribonuclease III [Brevibacillus brevis NBRC 100599]
          Length = 246

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/211 (28%), Positives = 101/211 (47%), Gaps = 5/211 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
           + ++ L++ IG+ F + S+L +A THSS  +  +       ERLEFLGD +L L +S  L
Sbjct: 19  MNFAQLQETIGFRFRDESVLRQAFTHSSYVNEQRGKRISDNERLEFLGDAVLELTVSQFL 78

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F    EGE++    ++V   +  + A  L+    + +             ++ ADV 
Sbjct: 79  YKTFPKMSEGEMTKLRAAIVCEPSLVKFAELLNFGDLVLLGKGEELTGGRQRPALLADVF 138

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+ + ALYLD G+E   +F++KY   R  K       D K++LQE+          Y++ 
Sbjct: 139 EAFVGALYLDQGLEAVFSFMEKYVYPRIDKGEFAQVTDFKSQLQEFVQQDNLGDIHYRIV 198

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              GP H+  F   V ++  +   G   SK+
Sbjct: 199 EEKGPAHNREFVSEVLLNNRSLGIGSGRSKK 229


>gi|154148336|ref|YP_001407136.1| ribonuclease III [Campylobacter hominis ATCC BAA-381]
 gi|153804345|gb|ABS51352.1| ribonuclease III [Campylobacter hominis ATCC BAA-381]
          Length = 223

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 111/207 (53%), Gaps = 3/207 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +EK +GY F N + L+ ALTH S      ++ ERLEFLGD ++ L+++  L+  F   +
Sbjct: 3   EIEKILGYKFKNENHLKLALTHKSF--KGAQNNERLEFLGDAVMDLIVAEYLYEKFRHTQ 60

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS    +LV+ ++ ++ AR+L +   + +S     +      SI +D  E++  A+Y
Sbjct: 61  EGDLSKLRAALVNEKSFAKFARKLKIGENLFLSLGEEHNGGRKKDSILSDAFEAIFGAIY 120

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           L+ G+EV  +   K  ++   +  K   +D KTELQE   A F +TP YK+   +GPDH 
Sbjct: 121 LESGLEVCKSLSIKILEEIFPQIDKSLYKDFKTELQEITQANFALTPTYKLLSATGPDHK 180

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQ 213
             F + V       A     SK+ AEQ
Sbjct: 181 KEFEMAVFFDDKKIAAAKGKSKKEAEQ 207


>gi|167035367|ref|YP_001670598.1| ribonuclease III [Pseudomonas putida GB-1]
 gi|189043333|sp|B0KV27|RNC_PSEPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|166861855|gb|ABZ00263.1| Ribonuclease III [Pseudomonas putida GB-1]
          Length = 229

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 113/225 (50%), Gaps = 10/225 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + LE+++GY F N+  +  ALTH S +     + ERLEFLGD IL  +    LF  F  
Sbjct: 5   LARLERKLGYTFKNQDQMLLALTHRSYA---GRNNERLEFLGDAILNFVAGEALFERFPQ 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EG+LS     LV  ET +++AR  DL  ++R+ S   K       SI AD +E+LI A
Sbjct: 62  AREGQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD  ++ A   V  +              +D KT LQE+  ++    P Y+V    G 
Sbjct: 122 IYLDADMDTARERVLAWLADEFEGLTLVDTNKDPKTRLQEFLQSRSCELPRYEVVDIQGE 181

Query: 184 DHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            H   F V  E+   +    ++G   S+R AEQVAAA  L   G+
Sbjct: 182 PHCRTFFVECEVVLLNNK--SRGQGVSRRIAEQVAAASALIALGV 224


>gi|156740401|ref|YP_001430530.1| ribonuclease III [Roseiflexus castenholzii DSM 13941]
 gi|254807896|sp|A7NGC5|RNC_ROSCS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|156231729|gb|ABU56512.1| Ribonuclease III [Roseiflexus castenholzii DSM 13941]
          Length = 234

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 9/232 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLL 54
           M       L  R+   F+++ LL +ALTH S  +   +      S ERLEFLGD I+  L
Sbjct: 1   MKK-PLDELCARLDVTFSDQRLLWQALTHRSFLNERVDERLSLFSNERLEFLGDAIVNFL 59

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
            +TL+F  F  A EG L+    +L+  ET +  AR  DL S   ++            S+
Sbjct: 60  ATTLVFERFPDAGEGYLTAWRAALIRTETLASFARRYDLGSHTLLARGEESSGARQRPSL 119

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVT 172
            AD  E+++AA+++D G++    F+   +++      +     D K++LQ    A+ G+T
Sbjct: 120 LADTFEAVVAAIFIDQGLDAVRKFLLPLFEETLATLQEQGLPVDYKSKLQARIQAERGIT 179

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           P Y++  RSGP+H P FT        +   G   SK+AAEQ AA + L R G
Sbjct: 180 PRYRMIERSGPEHQPEFTFEALAGDESLGTGRGASKQAAEQDAARDALDRLG 231


>gi|33241390|ref|NP_876331.1| ribonuclease III [Chlamydophila pneumoniae TW-183]
 gi|33235898|gb|AAP97988.1| ribonuclease III [Chlamydophila pneumoniae TW-183]
          Length = 237

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 3/224 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60
           +  + +E ++ + F    LLE ALTH S  +      E  ERLEFLGD +LGL+++  LF
Sbjct: 5   IDITAIEAKLNFTFTQPKLLEIALTHPSYKNESAVQIEDSERLEFLGDAVLGLIVTEHLF 64

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F S  EG LS    SLV+A+ C +    L +  ++ +    +        S  A++ E
Sbjct: 65  LLFPSMDEGTLSTARASLVNAKACCRYTTVLGIGDYLLIGKGEKIQSERGRLSAYANLFE 124

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           S++ A+YLDGG+  A          R         + K  LQ++   +F V P Y+ T  
Sbjct: 125 SILGAVYLDGGLSPARKLTVPLLPPREEILPLMSGNPKNLLQQFTQKQFRVLPVYQSTAV 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +    +  + + V ++     +G   SK+ AE++AA + L   G
Sbjct: 185 TDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQQALDTYG 228


>gi|150402698|ref|YP_001329992.1| ribonuclease III [Methanococcus maripaludis C7]
 gi|150033728|gb|ABR65841.1| Ribonuclease III [Methanococcus maripaludis C7]
          Length = 229

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 94/227 (41%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M    +  L  ++   F +  + ++A  HSS  +  +    E  ERLE+LGD +L L+IS
Sbjct: 1   MK--NFEKLLSKLDIKFNDLDIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLELIIS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF       EGE+S      V        A++L    ++ +             +I +
Sbjct: 59  EYLFKKESL-SEGEMSKLRAKYVCESALFTYAKKLKFNDYVLLGKGELNSKGYNKPAIIS 117

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           DV E+ IAA+YLD G++ A  FV+ +      ++ K          +        T EY 
Sbjct: 118 DVFEAFIAAIYLDQGLDSAKKFVNNHIIPIIEENSKELFIDYKTRLQEFPELNNKTIEYI 177

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                G  HD +F V V+       +G   SK+ AE  AA   L + 
Sbjct: 178 NLEEVGEPHDKKFIVAVKSGRKMLGKGTGKSKKEAEMKAAKNALLKL 224


>gi|254418789|ref|ZP_05032513.1| ribonuclease III [Brevundimonas sp. BAL3]
 gi|196184966|gb|EDX79942.1| ribonuclease III [Brevundimonas sp. BAL3]
          Length = 236

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 135/236 (57%), Gaps = 10/236 (4%)

Query: 1   MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHS------YQESYERLEFLGDRIL 51
           M+ LR    + L+ RIG+AF + +LLE+ALTH+S+              ERLEFLGDR+L
Sbjct: 1   MANLRAEAVAALQTRIGHAFRDAALLERALTHASVGEGAPVGVHGPRDNERLEFLGDRVL 60

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
           GLL++  L   + +A EG+LS   ++LV    C++V   L + + +R+S    K      
Sbjct: 61  GLLVAEKLSRDYPTANEGQLSSSLHALVDKTACARVGEALGVGAALRLSPGETKTGGRRK 120

Query: 112 TSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
             + AD VE+++AA+YLDGG+E A   F   + ++ +    +   + K+ LQEWA AK  
Sbjct: 121 AGVIADAVEAILAAVYLDGGLEAARAFFDKAWAEEFSAPPSRTVTNPKSALQEWAQAKGR 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
             P Y+V  R+G DH P FT+ V + G+ P      S++ AE+ AA  +LKREG+ 
Sbjct: 181 PLPTYRVADRTGSDHAPTFTIEVSVEGVEPLTAQGRSRQEAEKAAATALLKREGVI 236


>gi|33519987|ref|NP_878819.1| ribonuclease III [Candidatus Blochmannia floridanus]
 gi|81666891|sp|Q7VRR0|RNC_BLOFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|33504333|emb|CAD83226.1| ribonuclease III [Candidatus Blochmannia floridanus]
          Length = 232

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  + L+K++GY F    LL +ALTH S S+   +  ERLEFLGD IL   I+ +L++ +
Sbjct: 7   IEINLLQKKLGYFFHTVDLLLRALTHRSFSN---KHNERLEFLGDSILNYSITNILYHRY 63

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           +   EG++S   +SLV + T  ++A+E  L + +++     K+      SI AD VE++I
Sbjct: 64  NHMDEGDMSRIRSSLVCSRTLVELAKEFKLGNCLKLGQGELKNKGYNRESILADTVEAII 123

Query: 124 AALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
             ++LD  I+           ++   +     ++D KT LQE+        P Y +    
Sbjct: 124 GGIFLDSNIKTIEMLIAFWYQFRLNKIDLEDKQKDPKTRLQEYLQHHHLPLPIYCINQVQ 183

Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221
           G  HD  F +  ++S L  +  G   S+R AEQ AA   LK
Sbjct: 184 GQAHDQIFIMNCQVSSLKYSVMGRGSSRRKAEQDAAENALK 224


>gi|293376124|ref|ZP_06622372.1| ribonuclease III [Turicibacter sanguinis PC909]
 gi|325841637|ref|ZP_08167414.1| ribonuclease III [Turicibacter sp. HGF1]
 gi|292645251|gb|EFF63313.1| ribonuclease III [Turicibacter sanguinis PC909]
 gi|325489915|gb|EGC92263.1| ribonuclease III [Turicibacter sp. HGF1]
          Length = 236

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           + +   K    AF       +A THSS  + ++    E  ERLE+LGD +L L +S  LF
Sbjct: 6   QLAEFLKENKIAFRQLDRYCQAFTHSSYVNEHRHLKIEDNERLEYLGDAVLELTVSNYLF 65

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N   S  EGE++     LV   +    AR L+L   + +             ++ AD  E
Sbjct: 66  NLKPSLSEGEMTKIRAQLVCEPSLESYARNLNLGKLMLLGRGEENSGGRERPTVLADAFE 125

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + + A+YLD G++   +FV +   +   +       D K+ LQE   A      EY++  
Sbjct: 126 AFVGAMYLDLGMDTVYSFVHEIIHKAYQQGEVTQVFDYKSTLQELVQADSKKAIEYRIIS 185

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +GP H+  F  +V + G+   +G+  +K+ AEQ AA   ++  
Sbjct: 186 ETGPAHNRSFEAIVLLDGITLGRGIGKTKKEAEQQAAKGAIEIL 229


>gi|150399590|ref|YP_001323357.1| ribonuclease III [Methanococcus vannielii SB]
 gi|150012293|gb|ABR54745.1| Ribonuclease III [Methanococcus vannielii SB]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M    +  L   +   F N ++ ++A  HSS  + +     E  ERLE+LGD +L L++S
Sbjct: 1   MD--NFEKLLLELDIKFNNLNIFKQAFIHSSYVNEHDNENLEDNERLEYLGDAVLELVVS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF       EGE+S   +  V   +    A++L+   +I +             +I +
Sbjct: 59  EYLF-ENKLLNEGEMSKLRSKYVCEYSLFLYAKKLNFGDYILLGKGEINSNGFNRPTILS 117

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           DV E+ IAA+YLD G+     F +K+      ++ K          +        T  Y 
Sbjct: 118 DVFEAFIAAIYLDLGLCSVKKFFNKFIVPIIEENSKKLFIDYKTKLQEMIQSENKTVRYI 177

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    G  HD  F V V+I     ++G+  SK+ AE+ AA   L + 
Sbjct: 178 LLEELGEPHDKEFIVAVKIGRKIISKGVGKSKKDAERQAAKIALLKL 224


>gi|312622598|ref|YP_004024211.1| ribonuclease iii [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203065|gb|ADQ46392.1| ribonuclease III [Caldicellulosiruptor kronotskyensis 2002]
          Length = 222

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/218 (29%), Positives = 105/218 (48%), Gaps = 1/218 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +EK +GY F +++LL  ALTH S +HS +  YERLEFLGD  L L +S  LF HF   
Sbjct: 2   EEIEKALGYKFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPEL 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V ++T S++A +L+L + I      + +      SI ADVVE++  A+
Sbjct: 62  SEGELTNIRAAVVCSQTLSKIAEKLNLKNHIIFGKREKMEKFHENKSILADVVEAIFGAI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +++ G E     +    K    K+   +     + +     +     +         +  
Sbjct: 122 FIESGFEKLEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEFVQKEGQKKIVYKDYEIIE-K 180

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             F   + I G   ++G   SK+ A+Q AA + L   G
Sbjct: 181 KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218


>gi|299067031|emb|CBJ38226.1| Ribonuclease III (RNase III) [Ralstonia solanacearum CMR15]
          Length = 256

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 108/221 (48%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+ Y F+   LL++ALTH S         ERLEFLGD IL   ++ +L+  F
Sbjct: 1   MSLEALQQRLDYRFSKPELLQQALTHRS---HNAMHNERLEFLGDSILNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L   +R+     K       SI AD +E++ 
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLLLPDELRLGEGELKSGGFRRPSILADALEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + K +     +       +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  H+ +F V   I  L     G   S+RAAEQ AA   L+
Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218


>gi|167623017|ref|YP_001673311.1| ribonuclease III [Shewanella halifaxensis HAW-EB4]
 gi|189043349|sp|B0TIV7|RNC_SHEHH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|167353039|gb|ABZ75652.1| Ribonuclease III [Shewanella halifaxensis HAW-EB4]
          Length = 225

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 81/227 (35%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     L + +GY F  ++ L++ALTH S S+   +  ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNIPRLCRTLGYEFTEQAFLDQALTHRSASN---KHNERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F +A EG+LS    +LV  +  +++A E  L  ++++     K       SI AD V
Sbjct: 58  YHQFPTATEGDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E++I A+YLD  IE   + V K+++ R  +     ++D KT LQE         P YKV 
Sbjct: 118 EAIIGAIYLDSEIEKCRSLVLKWYESRLKVIEPINQKDPKTLLQEHLQKFRKPLPVYKVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
              G  H+  FTV   +  L+ A  G+  S+R AEQ AAA+VL+   
Sbjct: 178 HTEGDAHEQTFTVECIVEDLSQAVVGVASSRRKAEQSAAAQVLELMK 224


>gi|308068621|ref|YP_003870226.1| ribonuclease III [Paenibacillus polymyxa E681]
 gi|310641509|ref|YP_003946267.1| ribonuclease iii [Paenibacillus polymyxa SC2]
 gi|305857900|gb|ADM69688.1| Ribonuclease III (RNase III) [Paenibacillus polymyxa E681]
 gi|309246459|gb|ADO56026.1| Ribonuclease III [Paenibacillus polymyxa SC2]
          Length = 232

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 5/210 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLF 60
               L++++   F NR LL++A TH+S  + ++ S     ERLEFLGD +L L +S  L+
Sbjct: 4   DLKQLQQKLHIQFNNRQLLKQAFTHASYVNEHRFSQHADNERLEFLGDAVLELTVSEQLY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N + +  EGEL+    ++V   +  + A  L+   ++ +             ++ ADV E
Sbjct: 64  NQYPNRPEGELTKLRAAIVCEPSLVKFAVGLEFGQYVLLGKGEELTGGRTRPALLADVFE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + + ALYLD G+E   +F+++Y   + + +GK    D KTELQE          EYK+  
Sbjct: 124 AFVGALYLDQGLEAVRSFLERYIFPQIVLNGKLQMSDFKTELQELTQHHNMGMLEYKIVE 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             GP H+  F   V +       G   SK+
Sbjct: 184 ERGPAHEREFVAEVYMDSERLGAGTGRSKK 213


>gi|148544383|ref|YP_001271753.1| ribonuclease III [Lactobacillus reuteri DSM 20016]
 gi|184153747|ref|YP_001842088.1| ribonuclease III [Lactobacillus reuteri JCM 1112]
 gi|194466493|ref|ZP_03072480.1| Ribonuclease III [Lactobacillus reuteri 100-23]
 gi|227363192|ref|ZP_03847326.1| ribonuclease III [Lactobacillus reuteri MM2-3]
 gi|325682703|ref|ZP_08162219.1| ribonuclease III [Lactobacillus reuteri MM4-1A]
 gi|189043324|sp|A5VKP2|RNC_LACRD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|229564353|sp|B2G826|RNC_LACRJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|148531417|gb|ABQ83416.1| RNAse III [Lactobacillus reuteri DSM 20016]
 gi|183225091|dbj|BAG25608.1| ribonuclease III [Lactobacillus reuteri JCM 1112]
 gi|194453529|gb|EDX42426.1| Ribonuclease III [Lactobacillus reuteri 100-23]
 gi|227071798|gb|EEI10087.1| ribonuclease III [Lactobacillus reuteri MM2-3]
 gi|324977053|gb|EGC14004.1| ribonuclease III [Lactobacillus reuteri MM4-1A]
          Length = 233

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 9/227 (3%)

Query: 6   YSTLE----KRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIST 57
              L+    K     F N +LL +A T +S  + +       YER+EFLGD +L L++S 
Sbjct: 2   IEELQDYLAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVSE 61

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            ++  F    +G+L+    ++V  ++ S+ A+E     +IR+              +  D
Sbjct: 62  YIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARERPGLLCD 121

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + ES I ALYLD G      FV +    +  +       DAKT LQE+      +  EY 
Sbjct: 122 IFESFIGALYLDQGRPAVEKFVQRVIFPKLDMGWFDHAVDAKTSLQEFLQRDGDIAIEYH 181

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   SG ++DP F V V  +G    +G   SK+ AE  AA + L   
Sbjct: 182 LVEESGTENDPEFKVNVTANGDVIGEGKGSSKKHAEMQAAQQALDNM 228


>gi|119489560|ref|ZP_01622320.1| Ribonuclease III [Lyngbya sp. PCC 8106]
 gi|119454472|gb|EAW35620.1| Ribonuclease III [Lyngbya sp. PCC 8106]
          Length = 395

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 13/235 (5%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTL 58
             R   L + I   F +  LL++ALTH +    +    +   E+LEFLGD +L  L    
Sbjct: 163 RERLKELLETI--PFQDARLLQRALTHRTYVFEHPTKTEGDNEQLEFLGDSVLNFLAGDY 220

Query: 59  LFNHF-DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           L+  +     EGEL+ R +S V     +Q A +L+L  ++++            +S+ ++
Sbjct: 221 LYEQYSHRRDEGELTRRRSSFVDNSQFAQFAVKLNLGEWMQLGKGEELQGGRTKSSLLSN 280

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT------ELQEWAHAKFGV 171
             E+++ A YLD GIE     +  +++     + +     +T       LQ  A      
Sbjct: 281 TFEAVMGAYYLDSGIEAVRELIKPFFESVDTATVEDSIPQQTLIDVKGRLQNLAQTNDLP 340

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            PEY V    G DH   FTV V I+     +G    K+ AE+ AA + L+  G+ 
Sbjct: 341 IPEYYVVSEMGKDHAKIFTVEVRINRKFYGRGTGNKKKEAEKQAAIDALQCLGLL 395


>gi|296127821|ref|YP_003635073.1| ribonuclease III [Brachyspira murdochii DSM 12563]
 gi|296019637|gb|ADG72874.1| ribonuclease III [Brachyspira murdochii DSM 12563]
          Length = 246

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 119/232 (51%), Gaps = 9/232 (3%)

Query: 1   MSALRYSTL----EKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGL 53
           M+ +    +    ++ I Y F N+S L +A+TH + ++  ++     +RLEFLGD +L L
Sbjct: 1   MNIINIEEILNNCQEVIKYEFRNKSYLLEAITHRTYANESKKKMKYNQRLEFLGDSVLSL 60

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           +IS  LF  ++++KEG LS   +SLVS ++ + +++EL L  FI +          +  +
Sbjct: 61  IISDYLFKKYNTSKEGLLSKVKSSLVSQKSLADISKELKLGDFILLGHGEEVSGGRYRDN 120

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGV 171
           +  D+ E+++ A+YLD GI  A  FV K +K R        F +D KT  QE    K   
Sbjct: 121 MLEDLFEAIVGAIYLDSGINNAAQFVMKAYKNRLNNLDIENFDKDYKTIFQELIQKKHKT 180

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +P YK       ++   F   V ++    + G+  SK+ AE  AA + L+  
Sbjct: 181 SPVYKSYEYHDENNHEMFKSEVYVNDKNFSSGIGKSKKEAETEAAKKALENI 232


>gi|117928781|ref|YP_873332.1| ribonuclease III [Acidothermus cellulolyticus 11B]
 gi|117649244|gb|ABK53346.1| RNAse III [Acidothermus cellulolyticus 11B]
          Length = 246

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 107/221 (48%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
              L++  G   +  +LLE+A+TH S ++      + ERLEFLGD +LGL+I+  L+  F
Sbjct: 16  LEELQQIAGLPLS-LALLERAVTHRSYAYENGGLPTNERLEFLGDAVLGLVITDTLYRRF 74

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++V+    ++VAR L L  F+R+            +SI AD +E+LI
Sbjct: 75  PELPEGQLAKFRSAVVNMRALAEVARSLRLGEFLRLGRGEESTGGRNKSSILADALEALI 134

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSG 182
            A+Y++ G++ A  FV + +     ++             +   A   +   +      G
Sbjct: 135 GAVYVEHGLDGAAEFVHRLFDPLIDRAAALGAGLDWKTSLQELTAAQHLGVPFYDLSERG 194

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH+  FT  V I G     G   SK+ AEQ AA E   R 
Sbjct: 195 PDHEKVFTAEVRIGGRVYGTGSGHSKKEAEQRAAQEAWLRI 235


>gi|291546254|emb|CBL19362.1| RNAse III [Ruminococcus sp. SR1/5]
          Length = 226

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/213 (37%), Positives = 109/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M       LE+ IGY F  +SLLE+A+THSS ++          ERLEFLGD +L L+ S
Sbjct: 1   MEN-NLKKLEQTIGYQFTAKSLLEQAMTHSSYANEKHLGKLGCNERLEFLGDAVLELISS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  F + +EGEL+ +  S+V  ++ +  ARE  L  FI +             SI +
Sbjct: 60  DFLYKKFRNNQEGELTKKRASMVCEKSLAYCAREFGLPEFILLGRGEEMMGGRKRDSIVS 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +ESLI A+YLDGG E A  FV K+          F  D+KT LQE          EY+
Sbjct: 120 DGLESLIGAMYLDGGFEPAQAFVMKFILNDLEDKRIFY-DSKTVLQEMVQEGGNHPVEYR 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +    GPDH   FTV   I+G +   G+  +K+
Sbjct: 179 LLKEEGPDHSKSFTVEALINGKSMGTGIGHTKK 211


>gi|227544367|ref|ZP_03974416.1| ribonuclease III [Lactobacillus reuteri CF48-3A]
 gi|300909772|ref|ZP_07127233.1| ribonuclease III [Lactobacillus reuteri SD2112]
 gi|227185630|gb|EEI65701.1| ribonuclease III [Lactobacillus reuteri CF48-3A]
 gi|300893637|gb|EFK86996.1| ribonuclease III [Lactobacillus reuteri SD2112]
          Length = 233

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56
           M       L K     F N +LL +A T +S  + +       YER+EFLGD +L L++S
Sbjct: 1   MIKELQDYLAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++  F    +G+L+    ++V  ++ S+ A+E     +IR+              +  
Sbjct: 61  EYIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARERPGLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ ES I ALYLD G      FV +    +  +       DAKT LQE+      +  EY
Sbjct: 121 DIFESFIGALYLDQGRPAVEKFVQRVIFPKLDMGWFDHAVDAKTSLQEFLQRDGDIAIEY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +   SG ++DP F V V  +G    +G   SK+ AE  AA + L   
Sbjct: 181 HLVEESGTENDPEFKVNVTANGDVIGEGKGSSKKHAEMQAAQQALDNM 228


>gi|26988166|ref|NP_743591.1| ribonuclease III [Pseudomonas putida KT2440]
 gi|148549494|ref|YP_001269596.1| ribonuclease III [Pseudomonas putida F1]
 gi|37999409|sp|Q88MY5|RNC_PSEPK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043332|sp|A5W8F2|RNC_PSEP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|24982900|gb|AAN67055.1|AE016334_4 ribonuclease III [Pseudomonas putida KT2440]
 gi|148513552|gb|ABQ80412.1| RNAse III [Pseudomonas putida F1]
 gi|313500339|gb|ADR61705.1| Rnc [Pseudomonas putida BIRD-1]
          Length = 229

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 114/229 (49%), Gaps = 10/229 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            +   + LE+++GY F N+  +  ALTH S +     + ERLEFLGD IL  +    LF 
Sbjct: 1   MSASLAGLERKLGYTFKNQDQMLLALTHRSYA---GRNNERLEFLGDAILNFVAGEALFE 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS     LV  ET +++AR  DL  ++R+ S   K       SI AD +E+
Sbjct: 58  RFPQAREGQLSRLRARLVKGETLARLARGFDLGDYLRLGSGELKSGGFRRESILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD  ++ A   +  +              +D KT LQE+  ++    P Y+V  
Sbjct: 118 LIGAIYLDADMDTARERILAWLADEFEGLTLVDTNKDPKTRLQEFLQSRSCELPRYEVVD 177

Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             G  H   F V  E+   +    ++G   S+R AEQVAAA  L   G+
Sbjct: 178 IQGEPHCRTFFVECEVVLLNNK--SRGQGVSRRIAEQVAAASALIALGV 224


>gi|298571391|gb|ADI87733.1| RNase III [uncultured Nitrospirae bacterium MY3-5B]
          Length = 263

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 114/236 (48%), Gaps = 17/236 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFN 61
            ++LE+ I Y F ++ LL +++TH S  H      Q   ER+EFLGD +LGL IS  L+ 
Sbjct: 7   LTSLEQSINYYFNDKGLLIESVTHRSYYHECLDKSQPYNERVEFLGDAVLGLAISETLYT 66

Query: 62  HFDSA-----------KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
                            E E+S   + LVS +  SQ+A++++L +++++           
Sbjct: 67  EHVFCRKNDKTIHTIFSESEMSRLKSYLVSKKILSQLAQDINLGNYLKLGKGEEMTGGRE 126

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAK 168
             S+ A+ +E++  A++LDGG E A   +   ++    +        D KTELQE +   
Sbjct: 127 KLSLLANTLEAIFGAVFLDGGYEAAKAVILGLYQPILTQILSNHTSFDYKTELQEISQKL 186

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           F   PEYK+   SG DHD  F   V + G     G   +K+ A+  AA   L+  G
Sbjct: 187 FSSLPEYKLVLESGNDHDKDFVYEVYLDGKCMGTGSGKNKKTAQSAAACMALETLG 242


>gi|229086402|ref|ZP_04218578.1| Ribonuclease 3 [Bacillus cereus Rock3-44]
 gi|228696918|gb|EEL49727.1| Ribonuclease 3 [Bacillus cereus Rock3-44]
          Length = 245

 Score =  133 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           + T +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKTFQQKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   + + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGNLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G++    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLDTVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|312869965|ref|ZP_07730104.1| ribonuclease III [Lactobacillus oris PB013-T2-3]
 gi|311094550|gb|EFQ52855.1| ribonuclease III [Lactobacillus oris PB013-T2-3]
          Length = 232

 Score =  133 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 9/227 (3%)

Query: 6   YSTLE----KRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57
              L+    K     F++  LL +A T +S  + +     + YER+EFLGD +L L++S 
Sbjct: 2   IEELQDYLAKEFDIHFSDPRLLAEAFTQASYVNEHPHQNLKFYERIEFLGDAVLELIVSE 61

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            ++  +    +G+L+    ++V  ++ S+ A+E     +IR+              +  D
Sbjct: 62  YIYKRYPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEELAGARQRPGLLCD 121

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + ES + ALYLD G      FV +    +  +       DAKT LQE+      V  EY 
Sbjct: 122 IFESFVGALYLDQGRPAVEKFVRRVIFPKLDMGWFDHAVDAKTSLQEFLQRDGDVLIEYH 181

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   SG +++P F V V  +G   A G   SK+ AE  AA   LK+ 
Sbjct: 182 LLEESGTENNPAFHVDVAANGQVIADGQGSSKKQAEMQAAQRALKKL 228


>gi|253573486|ref|ZP_04850829.1| ribonuclease III [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847014|gb|EES75019.1| ribonuclease III [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 232

 Score =  133 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/214 (32%), Positives = 103/214 (48%), Gaps = 6/214 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+      L++++  AF NR LL++A TH+S  + ++    E  ERLEFLGD +L L +S
Sbjct: 1   MNG-DLKQLQQKLELAFQNRQLLKQAFTHASYVNEHRFSQYEDNERLEFLGDAVLELTVS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  F    EGEL+    ++V   +  + A  L+   ++ +             ++ A
Sbjct: 60  EHLYRLFPDRPEGELTKLRAAIVCEPSLVKFAENLEFGKYVLLGKGEELTGGRTRPALLA 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEY 175
           DV ES I ALYLD G+E    F+ ++        GK    D KTELQE        T EY
Sbjct: 120 DVFESFIGALYLDQGLEAVTAFLHRHVFPNLTLDGKLSTGDFKTELQELTQHHGMGTLEY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           ++    GP H+  F   V + G    QG   SK+
Sbjct: 180 RIIEERGPAHEREFVAEVRMDGRPLGQGTGRSKK 213


>gi|328948083|ref|YP_004365420.1| ribonuclease 3 [Treponema succinifaciens DSM 2489]
 gi|328448407|gb|AEB14123.1| Ribonuclease 3 [Treponema succinifaciens DSM 2489]
          Length = 248

 Score =  133 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 7/230 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTL 58
                   + +   F N SLL+ A  H S S+      + + ERLEFLGD +LGL  +  
Sbjct: 18  KKELDEFCRHLKLHFKNYSLLDLAFHHRSYSNENTSYKRYNNERLEFLGDSVLGLATAAF 77

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQV-ARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           L+N     KEG+L+    ++VS ++ + +   ++ +  ++ +             +I AD
Sbjct: 78  LYNDMSQNKEGDLAKIKANVVSEQSLAPIAVEKMHIDKYLVLGKGEELSGGRTKKAILAD 137

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEY 175
            VE++I ALY+D G E A   V +       K       +D KT LQE+   K    P Y
Sbjct: 138 AVEAVIGALYIDSGYESAERLVLELIIPEIRKVQSDHGSKDYKTLLQEFYQKKTNACPSY 197

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            +   +GPDHD  F V V++  +        +K++AEQ AA    K  GI
Sbjct: 198 SLVRTTGPDHDRIFYVSVKLGDVVYGPASGKNKKSAEQAAAGVACKALGI 247


>gi|85705112|ref|ZP_01036212.1| Ribonuclease III [Roseovarius sp. 217]
 gi|85670434|gb|EAQ25295.1| Ribonuclease III [Roseovarius sp. 217]
          Length = 238

 Score =  133 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 86/218 (39%), Positives = 123/218 (56%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
               + R+G+ F    LL +ALTHSS+    ++  +RLEFLGDR+LGL++S  L +    
Sbjct: 18  IKAFQTRLGHEFTATELLIRALTHSSMVTPNRDDNQRLEFLGDRVLGLVMSEALLSQDKG 77

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EG+L+ RFN+LV  E C+ VARE+DL + +++             ++  D +E++IAA
Sbjct: 78  ATEGQLAPRFNALVRKEACADVAREIDLGAVLKLGRSEMLSGGRRKEALLGDAMEAVIAA 137

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +YLD G + A   V + W  R  +     RDAKT LQEWA A+    P+Y    R GPDH
Sbjct: 138 IYLDAGFDAARAVVLRLWGARIGEVKDDARDAKTALQEWAQARGLPPPDYIELRRKGPDH 197

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            P FT+  ++     A+    SKR AEQ AA  +L R 
Sbjct: 198 APVFTISAQLKSGESAEATAGSKRQAEQTAAKALLARL 235


>gi|255019675|ref|ZP_05291754.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756]
 gi|254970898|gb|EET28381.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756]
          Length = 232

 Score =  133 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 109/225 (48%), Gaps = 7/225 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M +     L++ IGY F +  LL +ALTH S      +  ERLEFLGD  L  +++  L+
Sbjct: 1   MKS--LERLQQAIGYVFQDEVLLRQALTHRSAG---AQHNERLEFLGDAALNFVVAAELY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG LS     LV  ET +QVA E+ LA  + +     +   +   SI+AD +E
Sbjct: 56  ARFPKVSEGNLSRMRARLVREETLAQVAGEIALADSLILGPGELRSGGARRDSIRADALE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A YLDGG   A   V +       ++   +  RD KT LQE+   +    P Y + 
Sbjct: 116 AIIGAAYLDGGFAAAQGIVRQLIVPLMTEALGDEELRDPKTRLQEFLQGQGKPLPSYSLV 175

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+ RF     + G+        S+R AEQ AA ++L++ 
Sbjct: 176 EEKGQAHERRFVARCSVQGVPATDAEAGSRRKAEQQAAQQMLEQL 220


>gi|170709347|ref|ZP_02899762.1| ribonuclease III [Bacillus anthracis str. A0389]
 gi|170125742|gb|EDS94654.1| ribonuclease III [Bacillus anthracis str. A0389]
          Length = 245

 Score =  133 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I A YLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGAFYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|254486436|ref|ZP_05099641.1| ribonuclease III [Roseobacter sp. GAI101]
 gi|214043305|gb|EEB83943.1| ribonuclease III [Roseobacter sp. GAI101]
          Length = 228

 Score =  133 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 84/214 (39%), Positives = 124/214 (57%), Gaps = 1/214 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +      E RIGY F+   LL +A+TH+S+S + ++  +RLEFLGDR+LGL+++  L
Sbjct: 1   MKLSADLRAFEGRIGYKFSKPELLIRAVTHASMSSANRDDNQRLEFLGDRVLGLVMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                 A EG+L+ RFN+LV  E C+ VARE+D+ + +++             ++  D +
Sbjct: 61  LMLDPKATEGQLAPRFNALVRKEACADVAREIDMGAVLKLGRSEMLSGGRRKQALLGDAI 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+Y+DGG + A   + + W  R     +  RDAKT LQEWA A+    P Y  T 
Sbjct: 121 EAIIAAVYMDGGFDAARDLIIRLWGDRVQTVKQDARDAKTALQEWAQARGFPPPSYVQTD 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           R GPDH P FT+  ++   A A  +  SKR AEQ
Sbjct: 181 RQGPDHAPVFTITAKVQNGASAVAVAPSKRQAEQ 214


>gi|62184964|ref|YP_219749.1| ribonuclease III [Chlamydophila abortus S26/3]
 gi|81312866|sp|Q5L6E3|RNC_CHLAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|62148031|emb|CAH63783.1| ribonuclease III [Chlamydophila abortus S26/3]
          Length = 237

 Score =  133 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 4/224 (1%)

Query: 1   MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLIS 56
           M+  +    +E ++ + F    LL  ALTH S  +      E  ERLEFLGD +L L+++
Sbjct: 1   MNNLINIKEVEAKLNFTFTQPKLLVTALTHPSYRNETATITEDSERLEFLGDAVLCLIVT 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F S  EG LS    +L++A +C Q    L L  ++ +    R       TS  A
Sbjct: 61  EHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLIGKGERIQNERGKTSAYA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           ++ E+++ A+YLDGG+  A          +         + K  LQ+         P Y+
Sbjct: 121 NLFEAILGAVYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKHLRTLPVYQ 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
               + P     + + V ++     +G   SK+ AE++AA + L
Sbjct: 181 YEPWTSPQGASGYHIRVLVNHEVWGEGFALSKKEAEKLAAQQAL 224


>gi|332141899|ref|YP_004427637.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551921|gb|AEA98639.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
          Length = 228

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +  Y  L K IGY F N +LLE+ALTH S +    +  ERLEFLGD ILG++I   L
Sbjct: 1   MQGIDKYLRLYKAIGYTFNNEALLEQALTHRSAAK---QHNERLEFLGDAILGMIIGETL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F +  EG+L+   ++LV  +T +++A+E  +   + +     K      +SI AD V
Sbjct: 58  FKRFPTVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+++ A+YLD G++     +D+ W+ R  +       +D+KT LQE+   +    P Y+V
Sbjct: 118 EAILGAIYLDSGMDEVRGVIDRLWESRINQLDPNAHPKDSKTRLQEFLQGRKQALPTYEV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223
              SG DH   F V  ++  L  A      S+R AEQ AA   L++ 
Sbjct: 178 LSISGKDHAQTFEVCCKVESLPDAVVAPGNSRRKAEQEAARLTLEKL 224


>gi|148642236|ref|YP_001272749.1| ribonuclease III (dsRNA-specific), Rnc [Methanobrevibacter smithii
           ATCC 35061]
 gi|148551253|gb|ABQ86381.1| ribonuclease III (dsRNA-specific), Rnc [Methanobrevibacter smithii
           ATCC 35061]
          Length = 223

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 3/220 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            L ++      +R L + A TH S    H    +YERLEFLGD +L +++S  L+  +  
Sbjct: 2   NLLEKFNILPKDRHLYDVAFTHGSYGTKHGLDYTYERLEFLGDSVLNMIVSEYLYKQYPD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG+L+    + V        + EL L   I++  D  K   + + SI ADV ES + A
Sbjct: 62  YEEGKLTKLRANYVCQTALIYYSHELGLDKHIKIYGDDSKITENEVLSITADVFESFLGA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           ++LD GIE A  ++ K           F  D K+ ++E+  A+             G  H
Sbjct: 122 IFLDQGIEFAKDYISKIIFPYIDAKKVFFFDYKSVIKEYGDAQEVDIEYKI-IDECGVPH 180

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           +  F + + I G     G   +K+ AEQ A+ + +K+  I
Sbjct: 181 NKTFIISILIDGKEMGVGKGKNKKEAEQAASKQAMKKLKI 220


>gi|227878860|ref|ZP_03996766.1| ribonuclease III [Lactobacillus crispatus JV-V01]
 gi|256843377|ref|ZP_05548865.1| ribonuclease III [Lactobacillus crispatus 125-2-CHN]
 gi|256849801|ref|ZP_05555232.1| double stranded RNA-specific ribonuclease RNase [Lactobacillus
           crispatus MV-1A-US]
 gi|262046954|ref|ZP_06019914.1| ribonuclease III [Lactobacillus crispatus MV-3A-US]
 gi|293381175|ref|ZP_06627183.1| ribonuclease III [Lactobacillus crispatus 214-1]
 gi|227861551|gb|EEJ69164.1| ribonuclease III [Lactobacillus crispatus JV-V01]
 gi|256614797|gb|EEU19998.1| ribonuclease III [Lactobacillus crispatus 125-2-CHN]
 gi|256713290|gb|EEU28280.1| double stranded RNA-specific ribonuclease RNase [Lactobacillus
           crispatus MV-1A-US]
 gi|260572936|gb|EEX29496.1| ribonuclease III [Lactobacillus crispatus MV-3A-US]
 gi|290922215|gb|EFD99209.1| ribonuclease III [Lactobacillus crispatus 214-1]
          Length = 229

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 98/230 (42%), Gaps = 10/230 (4%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55
           M + +    L+      F N  LLE+A THSS S+ +       YE+LEFLGD +L L +
Sbjct: 1   MVSTKFLKKLKDDYNIEFNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  ++ H+    EGEL+   +++V  E  S+ A E      I + +   K       ++ 
Sbjct: 61  SNYVYLHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            DV E+   AL+LD G+     F+         K             +    + G     
Sbjct: 121 EDVFEAFNGALFLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIE 180

Query: 176 KVTFRSG--PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                    P H   F V ++I+G   ++G   +K+AAEQ AA   L++ 
Sbjct: 181 YTVISESQLPSH---FVVELKINGKVESKGEGHNKKAAEQQAAKFALQKL 227


>gi|256830196|ref|YP_003158924.1| ribonuclease III [Desulfomicrobium baculatum DSM 4028]
 gi|256579372|gb|ACU90508.1| ribonuclease III [Desulfomicrobium baculatum DSM 4028]
          Length = 242

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 110/221 (49%), Gaps = 3/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFD 64
              L+  I Y F    LL +ALTHSS ++ +     ERLEFLGD +L L +S  LF  F 
Sbjct: 10  LQALQNEIHYEFKQVKLLIQALTHSSHANEHGCPHNERLEFLGDAVLELAVSQELFRKFP 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   ++LVS    +Q AR + L + + +             S+ +D +E+++ 
Sbjct: 70  EVQEGHLTKMRSALVSEGALAQAARRIHLGACLLLGRGEDVQGGREKNSVLSDALEAVLG 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD--AKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLDGG+E A T V+  +  +     +  R    K+ LQE     +   P Y +    G
Sbjct: 130 AVYLDGGLERAITCVNFLYAGQWPTPPETFRPRDFKSLLQEATQRIWKARPSYALRESHG 189

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P+H  ++TVVV +      +  + S R AEQ AA + L + 
Sbjct: 190 PEHAKQYTVVVTMPDKTEVECEERSMRKAEQGAAEQALVQL 230


>gi|220927101|ref|YP_002502403.1| ribonuclease III [Methylobacterium nodulans ORS 2060]
 gi|219951708|gb|ACL62100.1| ribonuclease III [Methylobacterium nodulans ORS 2060]
          Length = 244

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 94/222 (42%), Positives = 131/222 (59%), Gaps = 1/222 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             STLE++IG+ FA++ LL +ALTH S +    ESY+RLEFLGDR+LGL ++  LF    
Sbjct: 15  DLSTLEEKIGHRFADQELLVRALTHVSAATGP-ESYQRLEFLGDRVLGLAVADGLFAALP 73

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG+LS R + LV  E+C+ VA   D+   +++ +           +I ADV E+++ 
Sbjct: 74  GADEGDLSRRLSGLVRRESCAAVATAWDVGPHLKLGAGEVYGGGRRNPAILADVCEAILG 133

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A++LD G E A T +D+ +       G   RD K+ LQEWA      TP Y V  R+GPD
Sbjct: 134 AIFLDAGYEAAKTVIDRAFAAGNEVEGTRTRDPKSALQEWAQGLGLPTPTYAVVERAGPD 193

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           H P F +   + G+AP  G+  SKR AEQ AA  +L REG+W
Sbjct: 194 HAPIFRIEARVLGVAPGVGVGGSKRLAEQEAARLLLMREGVW 235


>gi|50085655|ref|YP_047165.1| ribonuclease III [Acinetobacter sp. ADP1]
 gi|81392620|sp|Q6F9C2|RNC_ACIAD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|49531631|emb|CAG69343.1| ribonuclease III, ds RNA [Acinetobacter sp. ADP1]
          Length = 230

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 75/219 (34%), Positives = 111/219 (50%), Gaps = 5/219 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L+ RIGY F    LL+ ALTH S+S  ++ +YERLEFLGD +LG++I+  L+  +    
Sbjct: 12  RLQSRIGYEFKQLELLQLALTHRSVS--HKYNYERLEFLGDSLLGMIIANYLYQAYPHEN 69

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+Y
Sbjct: 70  EGRLTRMRATLVRQEALGKIANDLKLSRCLILSTGELKSGGHHRESILADTVEAIIGAIY 129

Query: 128 LDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +D                     ++     +D K+ LQE+  A+    P Y+V    G  
Sbjct: 130 VDSNDLNLLKNIVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDA 189

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +  F VV  + GL    G   S+R AEQ AAAE+LK  
Sbjct: 190 PNQHFKVVCLVEGLPRVMGEGSSRRFAEQTAAAEILKLL 228


>gi|30021937|ref|NP_833568.1| ribonuclease III [Bacillus cereus ATCC 14579]
 gi|206971258|ref|ZP_03232209.1| ribonuclease III [Bacillus cereus AH1134]
 gi|218232410|ref|YP_002368650.1| ribonuclease III [Bacillus cereus B4264]
 gi|218899002|ref|YP_002447413.1| ribonuclease III [Bacillus cereus G9842]
 gi|228902352|ref|ZP_04066509.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222]
 gi|228909674|ref|ZP_04073497.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200]
 gi|228922603|ref|ZP_04085903.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228954126|ref|ZP_04116154.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228960065|ref|ZP_04121729.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228973866|ref|ZP_04134442.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228980456|ref|ZP_04140766.1| Ribonuclease 3 [Bacillus thuringiensis Bt407]
 gi|229047536|ref|ZP_04193126.1| Ribonuclease 3 [Bacillus cereus AH676]
 gi|229071347|ref|ZP_04204570.1| Ribonuclease 3 [Bacillus cereus F65185]
 gi|229081104|ref|ZP_04213614.1| Ribonuclease 3 [Bacillus cereus Rock4-2]
 gi|229111320|ref|ZP_04240873.1| Ribonuclease 3 [Bacillus cereus Rock1-15]
 gi|229129125|ref|ZP_04258098.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4]
 gi|229146420|ref|ZP_04274791.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24]
 gi|229152048|ref|ZP_04280243.1| Ribonuclease 3 [Bacillus cereus m1550]
 gi|229180125|ref|ZP_04307469.1| Ribonuclease 3 [Bacillus cereus 172560W]
 gi|229192018|ref|ZP_04318988.1| Ribonuclease 3 [Bacillus cereus ATCC 10876]
 gi|296504344|ref|YP_003666044.1| ribonuclease III [Bacillus thuringiensis BMB171]
 gi|38372411|sp|Q819V8|RNC_BACCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735367|sp|B7IUK8|RNC_BACC2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735368|sp|B7HDX2|RNC_BACC4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|29897493|gb|AAP10769.1| Ribonuclease III [Bacillus cereus ATCC 14579]
 gi|206734030|gb|EDZ51201.1| ribonuclease III [Bacillus cereus AH1134]
 gi|218160367|gb|ACK60359.1| ribonuclease III [Bacillus cereus B4264]
 gi|218544165|gb|ACK96559.1| ribonuclease III [Bacillus cereus G9842]
 gi|228591569|gb|EEK49418.1| Ribonuclease 3 [Bacillus cereus ATCC 10876]
 gi|228603334|gb|EEK60811.1| Ribonuclease 3 [Bacillus cereus 172560W]
 gi|228631397|gb|EEK88031.1| Ribonuclease 3 [Bacillus cereus m1550]
 gi|228637053|gb|EEK93512.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24]
 gi|228654362|gb|EEL10227.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4]
 gi|228672096|gb|EEL27387.1| Ribonuclease 3 [Bacillus cereus Rock1-15]
 gi|228702148|gb|EEL54624.1| Ribonuclease 3 [Bacillus cereus Rock4-2]
 gi|228711801|gb|EEL63753.1| Ribonuclease 3 [Bacillus cereus F65185]
 gi|228723783|gb|EEL75138.1| Ribonuclease 3 [Bacillus cereus AH676]
 gi|228779276|gb|EEM27533.1| Ribonuclease 3 [Bacillus thuringiensis Bt407]
 gi|228785891|gb|EEM33894.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228799581|gb|EEM46534.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228805446|gb|EEM52037.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228837032|gb|EEM82373.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228849963|gb|EEM94794.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200]
 gi|228857321|gb|EEN01824.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222]
 gi|296325396|gb|ADH08324.1| ribonuclease III [Bacillus thuringiensis BMB171]
 gi|326941618|gb|AEA17514.1| ribonuclease III [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 245

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|75762036|ref|ZP_00741948.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74490482|gb|EAO53786.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 262

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 36  FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 95

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 96  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 155

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 156 FIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 215

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 216 KGPAHNREFVSRVTLNNVALGLGSGKSKK 244


>gi|30263852|ref|NP_846229.1| ribonuclease III [Bacillus anthracis str. Ames]
 gi|47529278|ref|YP_020627.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186699|ref|YP_029951.1| ribonuclease III [Bacillus anthracis str. Sterne]
 gi|49478414|ref|YP_037910.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|165873286|ref|ZP_02217894.1| ribonuclease III [Bacillus anthracis str. A0488]
 gi|167636662|ref|ZP_02394952.1| ribonuclease III [Bacillus anthracis str. A0442]
 gi|167642023|ref|ZP_02400254.1| ribonuclease III [Bacillus anthracis str. A0193]
 gi|170689645|ref|ZP_02880826.1| ribonuclease III [Bacillus anthracis str. A0465]
 gi|177655964|ref|ZP_02937116.1| ribonuclease III [Bacillus anthracis str. A0174]
 gi|190565836|ref|ZP_03018755.1| ribonuclease III [Bacillus anthracis Tsiankovskii-I]
 gi|196035867|ref|ZP_03103269.1| ribonuclease III [Bacillus cereus W]
 gi|196042325|ref|ZP_03109601.1| ribonuclease III [Bacillus cereus NVH0597-99]
 gi|196047446|ref|ZP_03114658.1| ribonuclease III [Bacillus cereus 03BB108]
 gi|218904979|ref|YP_002452813.1| ribonuclease III [Bacillus cereus AH820]
 gi|225865830|ref|YP_002751208.1| ribonuclease III [Bacillus cereus 03BB102]
 gi|227813243|ref|YP_002813252.1| ribonuclease III [Bacillus anthracis str. CDC 684]
 gi|228916486|ref|ZP_04080052.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228928897|ref|ZP_04091929.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228935163|ref|ZP_04097990.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228947568|ref|ZP_04109858.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229092891|ref|ZP_04224025.1| Ribonuclease 3 [Bacillus cereus Rock3-42]
 gi|229123363|ref|ZP_04252567.1| Ribonuclease 3 [Bacillus cereus 95/8201]
 gi|229186089|ref|ZP_04313258.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1]
 gi|229599971|ref|YP_002868086.1| ribonuclease III [Bacillus anthracis str. A0248]
 gi|254683443|ref|ZP_05147303.1| ribonuclease III [Bacillus anthracis str. CNEVA-9066]
 gi|254721380|ref|ZP_05183169.1| ribonuclease III [Bacillus anthracis str. A1055]
 gi|254735887|ref|ZP_05193593.1| ribonuclease III [Bacillus anthracis str. Western North America
           USA6153]
 gi|254739520|ref|ZP_05197217.1| ribonuclease III [Bacillus anthracis str. Kruger B]
 gi|254751172|ref|ZP_05203211.1| ribonuclease III [Bacillus anthracis str. Vollum]
 gi|254756720|ref|ZP_05208749.1| ribonuclease III [Bacillus anthracis str. Australia 94]
 gi|38372420|sp|Q81WI8|RNC_BACAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81395098|sp|Q6HEW6|RNC_BACHK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735366|sp|B7JJT6|RNC_BACC0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807235|sp|C3P5Q0|RNC_BACAA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807236|sp|C3L778|RNC_BACAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807237|sp|C1EP73|RNC_BACC3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|30258496|gb|AAP27715.1| ribonuclease III [Bacillus anthracis str. Ames]
 gi|47504426|gb|AAT33102.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180626|gb|AAT56002.1| ribonuclease III [Bacillus anthracis str. Sterne]
 gi|49329970|gb|AAT60616.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|164710971|gb|EDR16540.1| ribonuclease III [Bacillus anthracis str. A0488]
 gi|167510022|gb|EDR85437.1| ribonuclease III [Bacillus anthracis str. A0193]
 gi|167527913|gb|EDR90729.1| ribonuclease III [Bacillus anthracis str. A0442]
 gi|170666390|gb|EDT17172.1| ribonuclease III [Bacillus anthracis str. A0465]
 gi|172079908|gb|EDT65015.1| ribonuclease III [Bacillus anthracis str. A0174]
 gi|190562755|gb|EDV16721.1| ribonuclease III [Bacillus anthracis Tsiankovskii-I]
 gi|195991516|gb|EDX55482.1| ribonuclease III [Bacillus cereus W]
 gi|196021754|gb|EDX60449.1| ribonuclease III [Bacillus cereus 03BB108]
 gi|196026847|gb|EDX65478.1| ribonuclease III [Bacillus cereus NVH0597-99]
 gi|218539426|gb|ACK91824.1| ribonuclease III [Bacillus cereus AH820]
 gi|225790989|gb|ACO31206.1| ribonuclease III [Bacillus cereus 03BB102]
 gi|227006213|gb|ACP15956.1| ribonuclease III [Bacillus anthracis str. CDC 684]
 gi|228597265|gb|EEK54916.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1]
 gi|228660139|gb|EEL15775.1| Ribonuclease 3 [Bacillus cereus 95/8201]
 gi|228690513|gb|EEL44296.1| Ribonuclease 3 [Bacillus cereus Rock3-42]
 gi|228812088|gb|EEM58419.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824528|gb|EEM70333.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830704|gb|EEM76309.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228843065|gb|EEM88147.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|229264379|gb|ACQ46016.1| ribonuclease III [Bacillus anthracis str. A0248]
          Length = 245

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|89094542|ref|ZP_01167480.1| ribonuclease III [Oceanospirillum sp. MED92]
 gi|89081141|gb|EAR60375.1| ribonuclease III [Oceanospirillum sp. MED92]
          Length = 226

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 88/221 (39%), Positives = 125/221 (56%), Gaps = 6/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + L +RIG+ F++ SL E ALTH S      ++ ERLEFLGD IL  +I+  L+  F  
Sbjct: 5   VNELARRIGHDFSDLSLFELALTHRSCGK---KNNERLEFLGDSILNFVIADDLYARFPK 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           AKEGELS     +V   T S+VAREL L  ++R+ S   K       SI AD VE++I A
Sbjct: 62  AKEGELSRLRARMVKGVTLSEVARELGLGDYLRLGSGELKSGGFRRDSILADAVEAIIGA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD  ++ A  ++ K+++QR   L   +  +D+KT LQE+  ++    PEY++T   G 
Sbjct: 122 IYLDSDMDTARAYILKWFEQRLSTLDLNESLKDSKTRLQEFLQSRRLALPEYELTNVEGE 181

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
            H   F +   +SGL  PA+G   S+R AEQ AA   L   
Sbjct: 182 AHAQTFYIDCRVSGLNNPAKGTGSSRRQAEQEAAKNALTAL 222


>gi|65321177|ref|ZP_00394136.1| COG0571: dsRNA-specific ribonuclease [Bacillus anthracis str.
           A2012]
 gi|118479071|ref|YP_896222.1| ribonuclease III [Bacillus thuringiensis str. Al Hakam]
 gi|118418296|gb|ABK86715.1| RNAse III [Bacillus thuringiensis str. Al Hakam]
          Length = 262

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 36  FKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 95

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 96  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 155

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 156 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 215

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 216 KGPAHNREFVSRVTLNNVALGLGSGKSKK 244


>gi|312135000|ref|YP_004002338.1| ribonuclease iii [Caldicellulosiruptor owensensis OL]
 gi|311775051|gb|ADQ04538.1| ribonuclease III [Caldicellulosiruptor owensensis OL]
          Length = 222

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 1/218 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +EK +GY F +++LL  ALTH S +HS +  YERLEFLGD  L L +S  L+ +F   
Sbjct: 2   EEIEKALGYKFEDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLYVYFPEL 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V ++T S+VA +L+L + I      + +      SI ADV+E+L  A+
Sbjct: 62  SEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFYENKSILADVLEALFGAI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +++ G +     +    K    K+   +     + +     +     +         +  
Sbjct: 122 FIESGFDTVEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQREGQKKIVYKDCEILE-K 180

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             F   + I G   ++G   SK+ A+Q AA + L   G
Sbjct: 181 KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218


>gi|187928023|ref|YP_001898510.1| ribonuclease III [Ralstonia pickettii 12J]
 gi|238691793|sp|B2U981|RNC_RALPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|187724913|gb|ACD26078.1| Ribonuclease III [Ralstonia pickettii 12J]
          Length = 256

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 108/220 (49%), Gaps = 6/220 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S S       ERLEFLGD IL   ++ +L+  F
Sbjct: 1   MSLDALQQRLGYRFSKPELLQQALTHRSHS---AMHNERLEFLGDSILNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L   +R+     K       SI AD +E++ 
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + K +     +       +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPLYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220
           G  H+ +F V   I  L     G   S+RAAEQ AA   L
Sbjct: 178 GAAHNQQFEVECSIPKLEIRVSGSGASRRAAEQSAAKLAL 217


>gi|192359963|ref|YP_001983041.1| ribonuclease III [Cellvibrio japonicus Ueda107]
 gi|190686128|gb|ACE83806.1| ribonuclease III [Cellvibrio japonicus Ueda107]
          Length = 225

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 118/228 (51%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  L+Y  LE+R+GY+F ++  L+ ALTH S       + ERLEFLGD IL  LI   LF
Sbjct: 1   MINLKYQRLEQRLGYSFNDQRQLQLALTHRS---HGASNNERLEFLGDSILNFLIGEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              D A+EG++S   + LV  +T +++ARE +L   + +     K       SI AD VE
Sbjct: 58  LRLDEAREGQMSRLRSQLVRGDTLAELAREFELGECLVLGEGELKSGGHRRDSILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YL+ G++     V  ++  R          +D K+ LQE+  A+    PEY+V 
Sbjct: 118 AIIGAIYLESGLDTCRERVLAWYGDRLDAISLDTSAKDPKSRLQEYLQAQRQPLPEYRVV 177

Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H   FT+   ++      Q    S+R AE+ AAA +LK   +
Sbjct: 178 EVGGEGHAQVFTIECHVAIAKQSTQAQASSRREAEKQAAAAMLKLLKL 225


>gi|42526537|ref|NP_971635.1| ribonuclease III [Treponema denticola ATCC 35405]
 gi|81412559|sp|Q73NX5|RNC_TREDE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|41816730|gb|AAS11516.1| ribonuclease III [Treponema denticola ATCC 35405]
 gi|325473478|gb|EGC76673.1| ribonuclease 3 [Treponema denticola F0402]
          Length = 246

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62
               +K+ G  F +  LL+ A  H S S+ +     + ERLEFLGD +LGL+ ++ L+  
Sbjct: 16  LLEFQKQAGLKFKDLRLLDLAFHHRSFSNEHNNFHANNERLEFLGDSVLGLVAASYLYKS 75

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F+   EGEL+    S VS +  S+ A +L++++++ +             +I AD +E++
Sbjct: 76  FEDRPEGELAKIKASAVSEDALSKTASKLNISNYLVLGRGEEMSGGREKKAILADALEAV 135

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A Y+D G + A  FV +  +         KF  D K+ LQE    KF   P+Y++   
Sbjct: 136 IGAYYIDSGFKAAQKFVLRLLESTIHSVLEKKFISDYKSLLQELVQKKFKTVPKYELKKA 195

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGPDHD  F   V I+G         +K+ AEQ  A    +  
Sbjct: 196 SGPDHDRTFWFSVSINGKVYGPLSGKTKKEAEQSVAKVAYENL 238


>gi|315453268|ref|YP_004073538.1| ribonuclease III [Helicobacter felis ATCC 49179]
 gi|315132320|emb|CBY82948.1| ribonuclease III [Helicobacter felis ATCC 49179]
          Length = 225

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L++R+ Y F + +LL++ALTH S    +  + ERLEFLGD +L L+++ +L+  F  
Sbjct: 2   LEKLQERLAYHFQDMNLLQQALTHKSTKTPH--NNERLEFLGDAVLDLVVAEILYARFAD 59

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG+LS    SLV+ +   ++A  L L   I +S     +      SI A+  E+L+ A
Sbjct: 60  LQEGDLSKMRASLVNEKAFFKLASFLQLQDCILISPAEANNHGHTKPSILANAFEALMGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+E   T + ++               D K+ LQE   A+F V P Y +   SGP
Sbjct: 120 IYLESGLEPIKTLMTRFLDHVYPDLSLQSTFMDYKSALQELTQARFKVVPTYTLKSESGP 179

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH  +F + + I           SK+ A+Q+ A    ++ 
Sbjct: 180 DHAKQFEMQIFILDKLYGTCTAKSKKEAQQLCAQMAYQQL 219


>gi|42782941|ref|NP_980188.1| ribonuclease III [Bacillus cereus ATCC 10987]
 gi|47570283|ref|ZP_00240932.1| ribonuclease III [Bacillus cereus G9241]
 gi|206978506|ref|ZP_03239364.1| ribonuclease III [Bacillus cereus H3081.97]
 gi|217961269|ref|YP_002339837.1| ribonuclease III [Bacillus cereus AH187]
 gi|222097294|ref|YP_002531351.1| ribonuclease iii [Bacillus cereus Q1]
 gi|228986992|ref|ZP_04147118.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229157425|ref|ZP_04285503.1| Ribonuclease 3 [Bacillus cereus ATCC 4342]
 gi|229197960|ref|ZP_04324674.1| Ribonuclease 3 [Bacillus cereus m1293]
 gi|81409451|sp|Q732M1|RNC_BACC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735369|sp|B7HLI2|RNC_BACC7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807238|sp|B9IVD8|RNC_BACCQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|42738868|gb|AAS42796.1| ribonuclease III [Bacillus cereus ATCC 10987]
 gi|47553047|gb|EAL11449.1| ribonuclease III [Bacillus cereus G9241]
 gi|206743285|gb|EDZ54734.1| ribonuclease III [Bacillus cereus H3081.97]
 gi|217063842|gb|ACJ78092.1| ribonuclease III [Bacillus cereus AH187]
 gi|221241352|gb|ACM14062.1| ribonuclease III [Bacillus cereus Q1]
 gi|228585439|gb|EEK43543.1| Ribonuclease 3 [Bacillus cereus m1293]
 gi|228626152|gb|EEK82901.1| Ribonuclease 3 [Bacillus cereus ATCC 4342]
 gi|228772770|gb|EEM21210.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|324327746|gb|ADY23006.1| ribonuclease III [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 245

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|229825033|ref|ZP_04451102.1| hypothetical protein GCWU000182_00383 [Abiotrophia defectiva ATCC
           49176]
 gi|229790780|gb|EEP26894.1| hypothetical protein GCWU000182_00383 [Abiotrophia defectiva ATCC
           49176]
          Length = 247

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 110/227 (48%), Gaps = 5/227 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIST 57
              +   +E+ IGYAF NR  L  A +HSS  +       +  ER+EFLGD +L L+ S 
Sbjct: 12  KPEKAEKIEQTIGYAFKNRKFLTNAFSHSSFVNEKHLSKSDCNERMEFLGDAVLELVTSE 71

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LFN     +EGEL+     LV     +  ARE+ L+ ++ +             SI +D
Sbjct: 72  FLFNGHKDMQEGELTKLRARLVCEPALAYSAREIGLSDYLLLGHGEAITGGRNRDSILSD 131

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+YLDGG+  A  F++K+         K   D+KT  QE   +    T  YK+
Sbjct: 132 AMEALIGAIYLDGGLTNAKEFIEKHVLNDIEHK-KLFFDSKTIFQEMVQSDNMGTISYKL 190

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               GPDHD +F   V I       G   +K+AAEQVAA   + +  
Sbjct: 191 LAEYGPDHDKKFKEAVYIGEKEYGVGEGHTKKAAEQVAAYNGILKLK 237


>gi|69246105|ref|ZP_00603811.1| Ribonuclease III [Enterococcus faecium DO]
 gi|257878770|ref|ZP_05658423.1| ribonuclease III [Enterococcus faecium 1,230,933]
 gi|257881410|ref|ZP_05661063.1| ribonuclease III [Enterococcus faecium 1,231,502]
 gi|257885678|ref|ZP_05665331.1| ribonuclease III [Enterococcus faecium 1,231,501]
 gi|257887975|ref|ZP_05667628.1| ribonuclease III [Enterococcus faecium 1,141,733]
 gi|257890628|ref|ZP_05670281.1| ribonuclease III [Enterococcus faecium 1,231,410]
 gi|257893222|ref|ZP_05672875.1| ribonuclease III [Enterococcus faecium 1,231,408]
 gi|257896407|ref|ZP_05676060.1| ribonuclease III [Enterococcus faecium Com12]
 gi|257899381|ref|ZP_05679034.1| ribonuclease III [Enterococcus faecium Com15]
 gi|260558338|ref|ZP_05830534.1| ribonuclease III [Enterococcus faecium C68]
 gi|261207043|ref|ZP_05921732.1| ribonuclease III [Enterococcus faecium TC 6]
 gi|289565324|ref|ZP_06445774.1| ribonuclease III [Enterococcus faecium D344SRF]
 gi|293379492|ref|ZP_06625636.1| ribonuclease III [Enterococcus faecium PC4.1]
 gi|293556818|ref|ZP_06675379.1| ribonuclease III [Enterococcus faecium E1039]
 gi|293562991|ref|ZP_06677458.1| ribonuclease III [Enterococcus faecium E1162]
 gi|293567880|ref|ZP_06679221.1| ribonuclease III [Enterococcus faecium E1071]
 gi|293570730|ref|ZP_06681780.1| ribonuclease III [Enterococcus faecium E980]
 gi|294614479|ref|ZP_06694394.1| ribonuclease III [Enterococcus faecium E1636]
 gi|294618515|ref|ZP_06698077.1| ribonuclease III [Enterococcus faecium E1679]
 gi|294621998|ref|ZP_06701142.1| ribonuclease III [Enterococcus faecium U0317]
 gi|68195400|gb|EAN09847.1| Ribonuclease III [Enterococcus faecium DO]
 gi|257812998|gb|EEV41756.1| ribonuclease III [Enterococcus faecium 1,230,933]
 gi|257817068|gb|EEV44396.1| ribonuclease III [Enterococcus faecium 1,231,502]
 gi|257821534|gb|EEV48664.1| ribonuclease III [Enterococcus faecium 1,231,501]
 gi|257824029|gb|EEV50961.1| ribonuclease III [Enterococcus faecium 1,141,733]
 gi|257826988|gb|EEV53614.1| ribonuclease III [Enterococcus faecium 1,231,410]
 gi|257829601|gb|EEV56208.1| ribonuclease III [Enterococcus faecium 1,231,408]
 gi|257832972|gb|EEV59393.1| ribonuclease III [Enterococcus faecium Com12]
 gi|257837293|gb|EEV62367.1| ribonuclease III [Enterococcus faecium Com15]
 gi|260075512|gb|EEW63818.1| ribonuclease III [Enterococcus faecium C68]
 gi|260078671|gb|EEW66373.1| ribonuclease III [Enterococcus faecium TC 6]
 gi|289162814|gb|EFD10664.1| ribonuclease III [Enterococcus faecium D344SRF]
 gi|291589465|gb|EFF21272.1| ribonuclease III [Enterococcus faecium E1071]
 gi|291592656|gb|EFF24250.1| ribonuclease III [Enterococcus faecium E1636]
 gi|291595215|gb|EFF26546.1| ribonuclease III [Enterococcus faecium E1679]
 gi|291598425|gb|EFF29498.1| ribonuclease III [Enterococcus faecium U0317]
 gi|291600902|gb|EFF31193.1| ribonuclease III [Enterococcus faecium E1039]
 gi|291605117|gb|EFF34584.1| ribonuclease III [Enterococcus faecium E1162]
 gi|291609202|gb|EFF38474.1| ribonuclease III [Enterococcus faecium E980]
 gi|292642015|gb|EFF60181.1| ribonuclease III [Enterococcus faecium PC4.1]
          Length = 228

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 5/214 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M       L++     F + +LLE+A THSS  + ++       ERLEFLGD +L L++S
Sbjct: 1   MDNQLTKELKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+L+    ++V  ++ S+ A+E     ++ +             ++  
Sbjct: 61  QYLFRLYPHLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD G +    F++K    +          D KT+LQE       V+ EY
Sbjct: 121 DLFEAFLGALYLDQGFDTTHAFIEKVIFPKVKAGAFSHEMDHKTKLQEVLQKSGDVSIEY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           ++    GP H+  F + V +       G   SK+
Sbjct: 181 RLINEEGPAHERVFWIEVYVDDQLIGTGQGKSKK 214


>gi|270290359|ref|ZP_06196584.1| ribonuclease III [Pediococcus acidilactici 7_4]
 gi|270281140|gb|EFA26973.1| ribonuclease III [Pediococcus acidilactici 7_4]
          Length = 232

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 107/228 (46%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M       L +     F    LL++A T +S  + +     + YER+EFLGD +L L++S
Sbjct: 1   MLKDLEDDLSEMFDIHFTKHELLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVLQLVVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    +G+L+    ++V   + S  A+E     +IR+     K       S+  
Sbjct: 61  EYLYKRYPEMPQGKLTRLRAAMVCEASFSDFAKECHFDRYIRLGKGEEKSGARQRPSLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ ES I ALYLD G +    FV +    +          D K+ELQE       V   Y
Sbjct: 121 DIFESFIGALYLDQGRQAVEKFVRQVIFPKLDEGRFDHIIDHKSELQELLQRNGEVEINY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++   +GPD+D  FTV V  +    A+G   SK+AAEQ AA + L++ 
Sbjct: 181 ELISETGPDNDLVFTVQVSAANQVLAKGSGHSKKAAEQNAANKALQKL 228


>gi|114331755|ref|YP_747977.1| ribonuclease III [Nitrosomonas eutropha C91]
 gi|122313494|sp|Q0AF70|RNC_NITEC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|114308769|gb|ABI60012.1| RNAse III [Nitrosomonas eutropha C91]
          Length = 245

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 103/220 (46%), Gaps = 6/220 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y+   +++GY F    LL++ALTH S+      + ERLEFLGD +L   +STLLF  F 
Sbjct: 23  DYTVFSQKLGYTFKQPDLLQEALTHRSLGF---PNNERLEFLGDSVLNCAVSTLLFKRFL 79

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    + V+ +   Q+A  L +   I +    RK       SI A+ +E++I 
Sbjct: 80  LLPEGDLTRLRANFVNQDALHQLASALGIGELILLGDGERKSGGHQRPSILANAMEAIIG 139

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL+ G E     +   +      L    F +D KT LQE+  ++    PEY      G
Sbjct: 140 AIYLESGFEKVDQVIVALYDPLLNQLDPDLFGKDPKTLLQEYLQSRKVDLPEYSTLLTRG 199

Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
             H   F V   I   A    G   S+R AEQ AA    K
Sbjct: 200 DAHAQVFHVECVIPEFAIRTSGEGTSRRRAEQEAARRAYK 239


>gi|307545610|ref|YP_003898089.1| ribonuclease III [Halomonas elongata DSM 2581]
 gi|307217634|emb|CBV42904.1| ribonuclease III [Halomonas elongata DSM 2581]
          Length = 229

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 117/226 (51%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS        +RIG+ FA   LLE A+TH S       + ERLEFLGD I+  +I+  LF
Sbjct: 1   MSN-SLDIFSRRIGHRFAQPELLELAMTHRSYG---GRNNERLEFLGDSIVNFVIAEDLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A+EG+LS     LV  +T +++ARE+     +R+ S   K       SI AD VE
Sbjct: 57  QRFPQAREGQLSRLRARLVKGQTLAELAREMSFGECLRLGSGEMKSGGHRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G++ A T V  ++ +R   +     ++D KT LQE+  ++    P Y+V 
Sbjct: 117 AVIGAIYLDAGMDTARTRVLSWFAERLETINLQDTQKDPKTRLQEFLQSRQVALPRYEVI 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H   FTV   +  L     G+  S+R AEQ AA + L + 
Sbjct: 177 SVEGEAHAQTFTVECHVEMLDEHTLGIGSSRRHAEQQAAEQALSQL 222


>gi|302872013|ref|YP_003840649.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47]
 gi|302574872|gb|ADL42663.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47]
          Length = 222

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 1/218 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +EK +GY F +++LL+ ALTH S +HS +  YERLEFLGD  L L +S  L+ +F   
Sbjct: 2   EEIEKALGYKFEDKNLLKLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLYVYFPEL 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V ++T S+VA +L+L + I      + +      SI ADV+E+L  A+
Sbjct: 62  SEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEALFGAI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +++ G +     +    K    K+   +     + +     +     +         +  
Sbjct: 122 FIESGFDTVEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQREGQKKIVYKDCEILE-K 180

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             F   + I G   ++G   SK+ A+Q AA + L   G
Sbjct: 181 KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218


>gi|52141634|ref|YP_085190.1| ribonuclease III [Bacillus cereus E33L]
 gi|81686565|sp|Q636H7|RNC_BACCZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|51975103|gb|AAU16653.1| ribonuclease III [Bacillus cereus E33L]
          Length = 245

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL     + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGGLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|262196731|ref|YP_003267940.1| ribonuclease III [Haliangium ochraceum DSM 14365]
 gi|262080078|gb|ACY16047.1| ribonuclease III [Haliangium ochraceum DSM 14365]
          Length = 282

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 80/217 (36%), Positives = 115/217 (52%), Gaps = 4/217 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTL 58
            A+  S LE  +G+ F  R+LLE A+TH S ++         ERLEFLGD +L L +  +
Sbjct: 41  HAIDLSGLEDILGHRFRKRALLEAAVTHRSFANEQAVPCTDNERLEFLGDAVLDLAVGHM 100

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L +      EG LSV    +VS +  S++A  L L +++R+    R+       SI AD 
Sbjct: 101 LMDVHPDLSEGRLSVTRAQIVSEKGLSEIAYGLGLGTYLRLGKGERRSGGQNKASILADS 160

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           +E++IAA+YLDGG + A   V + + +           D KT LQE A A+   TP Y+V
Sbjct: 161 LEAVIAAVYLDGGFDAAWKLVARLFARTLEEVEISGFYDHKTRLQELAQARLKSTPAYRV 220

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
              +GPDH   F VV EI G    + +  SK+ AEQ+
Sbjct: 221 VDETGPDHAKLFEVVAEIDGREWGRAIGSSKKRAEQM 257


>gi|312793340|ref|YP_004026263.1| ribonuclease iii [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180480|gb|ADQ40650.1| ribonuclease III [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 222

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 1/218 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +E+ +GY F +++LL  ALTH S +HS +  YER EFLGD  L L +S  LF HF   
Sbjct: 2   EEIERALGYTFKDKNLLRLALTHKSATHSNKNCYERFEFLGDAALELAVSKYLFVHFPEL 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V ++T S+VA +L+L + I      + +      SI ADV+E++  A+
Sbjct: 62  SEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +++ G ++    +    K    K+   +     + +     +     +         +  
Sbjct: 122 FIESGFDIVEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQREGNKKIVYKDCEIIE-K 180

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             F   + I G   ++G   SK+ A+Q AA + L   G
Sbjct: 181 KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218


>gi|304384763|ref|ZP_07367109.1| ribonuclease III [Pediococcus acidilactici DSM 20284]
 gi|304328957|gb|EFL96177.1| ribonuclease III [Pediococcus acidilactici DSM 20284]
          Length = 235

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 5/222 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
             L +     F    LL++A T +S  + +     + YER+EFLGD +L L++S  L+  
Sbjct: 10  DDLSEMFDIHFTKHELLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVLQLVVSEYLYKR 69

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    +G+L+    ++V   + S  A+E     +IR+     K       S+  D+ ES 
Sbjct: 70  YPEMPQGKLTRLRAAMVCEASFSDFAKECHFDRYIRLGKGEEKSGARQRPSLLCDIFESF 129

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           I ALYLD G +    FV +    +          D K+ELQE       V   Y++   +
Sbjct: 130 IGALYLDQGRQAVEKFVRQVIFPKLDEGRFDHIIDHKSELQELLQRNGEVEINYELISET 189

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GPD+D  FTV V  +    A+G   SK+AAEQ AA + L++ 
Sbjct: 190 GPDNDLVFTVQVSAANQVLAKGSGHSKKAAEQNAANKALQKL 231


>gi|319779260|ref|YP_004130173.1| Ribonuclease III [Taylorella equigenitalis MCE9]
 gi|317109284|gb|ADU92030.1| Ribonuclease III [Taylorella equigenitalis MCE9]
          Length = 251

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++ Y+F +  LL +ALTH S S ++    ERLEFLGD IL   +++LLF   
Sbjct: 1   MKLDELQKKLNYSFKDIKLLNRALTHRSFSSTH---NERLEFLGDSILNFSVASLLFKKL 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+    S V+ +T +++A  L L   I++     K       SI AD VE++ 
Sbjct: 58  KDQAEGDLTRIRASYVNQDTLAKIANNLKLQDLIKLGEGELKSGGFKRPSILADAVEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+Y+D  IE A   V+  ++            RD+KT LQE+  AK    P YKV   +
Sbjct: 118 GAIYIDSNIEQAQKVVESIYEPLMKNVDFSTVGRDSKTLLQEFVQAKRVPLPSYKVLNIT 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  HD  F V   +      AQ +  S+R+AEQ AA  VL+
Sbjct: 178 GAAHDQEFEVECTVELFDVSAQAVGASRRSAEQAAATLVLE 218


>gi|254468787|ref|ZP_05082193.1| ribonuclease III [beta proteobacterium KB13]
 gi|207087597|gb|EDZ64880.1| ribonuclease III [beta proteobacterium KB13]
          Length = 228

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  L    LE  + Y F + +LL+K+LTH S       + ERLEFLGD IL   I+  LF
Sbjct: 1   MDDLIVKQLEDLLQYKFKDINLLQKSLTHRSFDGE---NNERLEFLGDSILNFTIAEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +  EG+LS    SLV + T +++A ++ L  FI +     K       SI AD  E
Sbjct: 58  IKFPNIPEGDLSRLRASLVKSGTLAEIAVKIKLGDFIFLGEGELKSAGWRRPSILADTFE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I ALYLDGG+  A TF+ +Y++     +   K  +D KT LQE   +K  + P+Y+V 
Sbjct: 118 AIIGALYLDGGLRPAQTFIHQYFQDWLSEINPAKVDKDPKTSLQELLQSKKLMLPKYEVA 177

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220
              G  H   F V   I+ L+   +    S+RAAEQ AA+  L
Sbjct: 178 DIKGEAHAQEFIVKCNIAQLSITTEASGSSRRAAEQEAASIAL 220


>gi|261408033|ref|YP_003244274.1| ribonuclease III [Paenibacillus sp. Y412MC10]
 gi|329929588|ref|ZP_08283295.1| ribonuclease III [Paenibacillus sp. HGF5]
 gi|261284496|gb|ACX66467.1| ribonuclease III [Paenibacillus sp. Y412MC10]
 gi|328936233|gb|EGG32685.1| ribonuclease III [Paenibacillus sp. HGF5]
          Length = 233

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 97/214 (45%), Gaps = 5/214 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M +     L+ ++   F N  LL++A TH+S  + ++    +  ERLEFLGD +L L +S
Sbjct: 1   MLSGDLKQLQHKLQIQFRNAMLLKQAFTHASYVNEHRFSQSQDNERLEFLGDAVLELTVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+N F    EGEL+    ++V   +  Q A  LD   ++ +             ++ A
Sbjct: 61  EFLYNLFPDRPEGELTKLRAAIVCEPSLVQFAVSLDFGRYVLLGKGEEMTGGRTRPALLA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           DV ES + ALYLD G+E    F+  +       +      D KTELQE          EY
Sbjct: 121 DVFESFVGALYLDQGLEAVRRFLSDHVFPTVTVNGRPQMSDYKTELQELTQHHGMGALEY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           ++    GP H+  F   V +      +G   SK+
Sbjct: 181 RIVEERGPAHEREFVSEVYMGSECLGRGSGRSKK 214


>gi|298242449|ref|ZP_06966256.1| ribonuclease III [Ktedonobacter racemifer DSM 44963]
 gi|297555503|gb|EFH89367.1| ribonuclease III [Ktedonobacter racemifer DSM 44963]
          Length = 227

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 113/220 (51%), Gaps = 8/220 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNH 62
             LE  +   F N +LL  ALTH S     +   + S ERLEFLGD IL L+ +  L+  
Sbjct: 3   EELEAILDIQFHNPNLLTLALTHRSYIYEAAGEGRSSNERLEFLGDSILALISADFLYRT 62

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGEL+     LV  ET +  AR+++L++F+ +    +         + A   E+L
Sbjct: 63  FPDLAEGELTDARAVLVRTETLANFARDINLSNFLLMGKGEQHSGG--GQRVLASAFEAL 120

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YLD G++   TF+ K  +     +   +  +D K+  QE A A  G+TP Y++  +
Sbjct: 121 LGAIYLDQGLDAVQTFLLKRLEPLAHTIVRNRLFKDNKSLFQELAQAHDGITPSYRLVNQ 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GP H+  FT+ V +      +G   +K++AEQ AA + L
Sbjct: 181 EGPSHNREFTIEVLLGEQVAGRGQGRNKQSAEQEAARQAL 220


>gi|225571976|ref|ZP_03780840.1| hypothetical protein RUMHYD_00270 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040509|gb|EEG50755.1| hypothetical protein RUMHYD_00270 [Blautia hydrogenotrophica DSM
           10507]
          Length = 244

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/208 (32%), Positives = 105/208 (50%), Gaps = 5/208 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
              LEK +GY F + +LL++A+THSS S+          ERLEFLGD +L ++ S  L+ 
Sbjct: 12  LKELEKELGYQFRDINLLKQAVTHSSYSNEKNMGKLGCNERLEFLGDAVLEVISSEFLYQ 71

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F   +EGEL+ +  S+V   T +  ARE+ L +++ +             SI +D +E+
Sbjct: 72  KFPILQEGELTKKRASMVCEPTLALCAREIRLDNYLLLGHGEENTGGRKRDSIVSDALEA 131

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +I A+YLDGG+  A  F+ K+         +   D+KT LQE           Y++    
Sbjct: 132 VIGAIYLDGGLASAKEFILKHVLNDMEHK-QLFYDSKTILQEIVQEHGNNPVSYQLIRED 190

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           GPDH+  FTV V +       G   +K+
Sbjct: 191 GPDHNKIFTVEVRVKQEVLGVGQGHTKK 218


>gi|167630237|ref|YP_001680736.1| ribonuclease iii [Heliobacterium modesticaldum Ice1]
 gi|226735377|sp|B0TGW4|RNC_HELMI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|167592977|gb|ABZ84725.1| ribonuclease iii [Heliobacterium modesticaldum Ice1]
          Length = 235

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 106/220 (48%), Gaps = 5/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L +RIG A  + + LE ALTH S  +       E  +RLEFLGD +LGL+I   LF  
Sbjct: 9   AELARRIGIASEDLATLEMALTHPSFVYENPQAPPEHNQRLEFLGDAVLGLVIGEQLFVR 68

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           + +  EGELS R  ++V     +  AR L L +++++             SI AD +E++
Sbjct: 69  YPTWTEGELSRRRAAVVCEANLADGARRLQLGAWLKLGRGEEASGGREKPSILADALEAV 128

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE-LQEWAHAKFGVTPEYKVTFRS 181
           I A++L GGIE A  F+   +      +            QEW          Y +   S
Sbjct: 129 IGAIFLSGGIEAARRFIVDLFGDALANAQNLVSGDNKTAFQEWVQRTGPADIRYCIVDES 188

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GPDHD RF   V ++G   A G   +K+ AEQ AA   ++
Sbjct: 189 GPDHDKRFVAAVMVNGTVIADGQGRTKKEAEQQAAGRAMR 228


>gi|126733741|ref|ZP_01749488.1| ribonuclease III [Roseobacter sp. CCS2]
 gi|126716607|gb|EBA13471.1| ribonuclease III [Roseobacter sp. CCS2]
          Length = 226

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 86/223 (38%), Positives = 131/223 (58%), Gaps = 1/223 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +   +   +R+G++F    +L +A+THSSI   +++  +RLEFLGDR+LGL+++  L
Sbjct: 1   MKLSAELTAFSQRLGHSFDKPEILIRAVTHSSIVSPHRDDNQRLEFLGDRVLGLVMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                SA EG L+ R+N+LV  E C++VAR++DL + +++     K       ++ AD +
Sbjct: 61  LKADPSAPEGLLAPRYNALVRREACAEVARQIDLGAVLKLGRSEMKSGGRRKEALLADAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+Y DGG + A   + + W  R        RDAKT LQEWA A+  V P+Y    
Sbjct: 121 EAVIAAVYQDGGFDAARAAILRLWGDRIHNVAADARDAKTALQEWAQARGEVPPQYVEVA 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           R+GPDH P FT+   ++     Q    SKR AEQ AA  +LK+
Sbjct: 181 RTGPDHQPVFTIEARLASGPSEQATAGSKRQAEQAAATALLKK 223


>gi|148284924|ref|YP_001249014.1| ribonuclease III [Orientia tsutsugamushi str. Boryong]
 gi|146740363|emb|CAM80798.1| ribonuclease III [Orientia tsutsugamushi str. Boryong]
          Length = 251

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 75/218 (34%), Positives = 122/218 (55%), Gaps = 2/218 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +   L+  IGY F +  LL +ALTH SI+ + Y ++Y+RLEFLGD IL L+IS  LF +F
Sbjct: 23  KLDALQSEIGYNFNSIDLLIEALTHPSINQYGYTKNYQRLEFLGDVILNLVISETLFKNF 82

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+     LV  E+   +A++++L  +I ++++  K       +   + +E++I
Sbjct: 83  SHYNEGKLAKSRAFLVCNESICLIAQKINLHKYIIMTANEEKCGGRSNKNNIENTMEAVI 142

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A+YLDGGI V    V+  WK        +   D K+ LQEW+ +K    P Y ++ ++G
Sbjct: 143 GAVYLDGGIHVIKDIVNSLWKVLIKDHELYLIADPKSALQEWSQSKNFGIPTYTLSSKTG 202

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             H P F V+V++  L P  G   + + A++ AA  +L
Sbjct: 203 QSHSPLFEVMVKVGRLEPQYGKGTTIKTAQKNAAQLML 240


>gi|72161055|ref|YP_288712.1| ribonuclease III [Thermobifida fusca YX]
 gi|90101652|sp|Q47S78|RNC_THEFY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71914787|gb|AAZ54689.1| RNAse III [Thermobifida fusca YX]
          Length = 240

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 102/219 (46%), Gaps = 4/219 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65
             ++ +G   A   +L +ALTH S ++      + ERLEFLGD +LGL+++  L+     
Sbjct: 12  EFQETVGVEIA-PDILTRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPD 70

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+    ++V+    + VAREL +  ++R+            +SI AD +E+LI A
Sbjct: 71  LSEGQLAKLRAAVVNMRALADVARELGIGRYVRLGRGEEATGGRDKSSILADTLEALIGA 130

Query: 126 LYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +YLD G++ A   V + +    A  SG           +   A   +     V   SGPD
Sbjct: 131 VYLDRGLDEASELVHRLFDPLIARASGLGAGLDWKTSLQELTAAELLGVPEYVVEESGPD 190

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H   F   V ++G     G   SK+ AEQ AA    K  
Sbjct: 191 HQKTFRATVRVAGQTYGSGEGRSKKEAEQQAAESAWKAI 229


>gi|154249761|ref|YP_001410586.1| ribonuclease III [Fervidobacterium nodosum Rt17-B1]
 gi|154153697|gb|ABS60929.1| Ribonuclease III [Fervidobacterium nodosum Rt17-B1]
          Length = 239

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 117/237 (49%), Gaps = 17/237 (7%)

Query: 1   MSALR------YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGD 48
           M  LR         L++R+GY F N+ LL  AL HSS ++   +        ERLEFLGD
Sbjct: 1   MDELRDRERRVLEELQRRLGYTFKNQMLLFNALCHSSYAYELNQIGRDVQDNERLEFLGD 60

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
            ++ L++  +L+ ++  + EG+++    ++ S E  +++A E++L  +I +     K   
Sbjct: 61  AVVELVVCDILYRNYPDSSEGDMAKVKGAVASEEVLTELANEIELGKYIFLGKGEEKTGG 120

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAH 166
              +SI AD  E+L AA+YLDG +E       +  K+        +   D KT LQE   
Sbjct: 121 RKRSSILADAFEALCAAIYLDGNLESVVKVFGEKLKREIEIFYTGQRIFDYKTALQEITQ 180

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +F   PEYK       D + +F V + I G   + G+  SK+ AE+ AA +  +  
Sbjct: 181 ERFKELPEYKTVKN---DENGKFLVELYIQGKKISMGIGNSKKDAEKDAAKKAYEIL 234


>gi|227833427|ref|YP_002835134.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
 gi|262184417|ref|ZP_06043838.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
 gi|227454443|gb|ACP33196.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
          Length = 256

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 107/225 (47%), Gaps = 6/225 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
            + ++ L K +G    +  LL  ALTH S ++      + ERLEFLGD +LGL I+  L+
Sbjct: 19  EVDHAPLLKALGVEIND-ELLCLALTHRSFANENGHLPNNERLEFLGDAVLGLSIAAKLY 77

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + S  E ++S    S+VS    S VARE+ +   + +    +        SI AD  E
Sbjct: 78  EKYPSRPESDISKMRASIVSRYGLSDVAREIGVGEHVLLGKGEQSTGGRDKDSILADTTE 137

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+Y   G EVA   V K +  +   +       D KT LQE         P Y  T
Sbjct: 138 AILGAIYRQHGFEVARGVVLKLFAAKIDNAVVSGRHMDWKTTLQELCAELKAAMPVYSAT 197

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +GP+HD  F  V  ++GL   +G   +K+ AEQ AA E  +  
Sbjct: 198 S-TGPEHDQTFNAVATVAGLTVGRGTGHNKKLAEQQAAEEACQAL 241


>gi|268318202|ref|YP_003291921.1| ribonuclease III [Rhodothermus marinus DSM 4252]
 gi|262335736|gb|ACY49533.1| ribonuclease III [Rhodothermus marinus DSM 4252]
          Length = 260

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 75/212 (35%), Positives = 108/212 (50%), Gaps = 6/212 (2%)

Query: 18  ANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
            N +L E+ALTH S+     +    S ERLEFLGD +LG +++  L+ HF    EG L+ 
Sbjct: 38  RNAALYEQALTHRSVLRGQPDSHLHSNERLEFLGDAVLGFVVAAYLYEHFPDRNEGFLTR 97

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
               LV+ E  +Q AR L L + +R+S ++ +       SI +D  E+L+ A+YLD G+E
Sbjct: 98  LRAKLVNREALAQAARRLGLGAHVRLSENMERAGGRDNDSILSDAFEALVGAIYLDLGLE 157

Query: 134 VAGTFVDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
            A  FV++            +   + K+ L E+A A+    P Y+V    GP H   FTV
Sbjct: 158 AARAFVERALLAPLDLEALARRPDNYKSLLLEFAQARGWPQPRYRVVAEEGPSHARTFTV 217

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              I      +G   SK+ AEQ AA E L R 
Sbjct: 218 EAWIGNRRLGRGTAGSKKQAEQQAAREALARL 249


>gi|159905527|ref|YP_001549189.1| ribonuclease III [Methanococcus maripaludis C6]
 gi|159887020|gb|ABX01957.1| Ribonuclease III [Methanococcus maripaludis C6]
          Length = 229

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M    +  L  ++   F + ++ ++A  HSS  +  +    E  ERLE+LGD +L L+IS
Sbjct: 1   MK--NFEKLLSKLDIKFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLELIIS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF   ++  EGE+S      V        A++L   +++ +             +I +
Sbjct: 59  EYLF-KQENLSEGEMSKLRAKYVCESALFTYAKKLKFDNYVLLGKGELISKGYNKPAIVS 117

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           DV E+ IAA+YLD G+  A  FV  +      +S K          +        +  Y 
Sbjct: 118 DVFEAFIAAIYLDQGLNSAKKFVYNHILPIIEESSKELFIDYKTKLQEFPELINKSINYV 177

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +G  HD +F V V+       +G+  SK+ AE  AA   L + 
Sbjct: 178 NLEEAGEPHDKKFVVAVKQDRKILGKGIGKSKKEAEMKAAKNALLKL 224


>gi|158521513|ref|YP_001529383.1| ribonuclease III [Desulfococcus oleovorans Hxd3]
 gi|158510339|gb|ABW67306.1| Ribonuclease III [Desulfococcus oleovorans Hxd3]
          Length = 231

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 108/223 (48%), Gaps = 7/223 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
           +  + LE+ + Y F +  LL KAL HSS  +   +      ERLEFLGD  L L I  LL
Sbjct: 1   MNTTLLEQHLVYRFTDTGLLAKALRHSSYVNEQADPAMEDNERLEFLGDAALSLCIGHLL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              F    EG+LS     LV+A   + + R ++L  ++ +     +       SI A+ V
Sbjct: 61  MARFPELSEGDLSQTRAGLVNAGWLADIGRSMNLGEYVLLGKGEEQTNGRNKDSILANAV 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+L+ A+YLDGG +     V   ++       +    R+ K+ LQE   A  G  P Y++
Sbjct: 121 EALLGAIYLDGGFDAVMAVVRHKFENDIEALAALDMNRNYKSLLQELTQATDGKAPTYEI 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              +GPDHD  F   V    +  A+G   +K+ A+Q AA + L
Sbjct: 181 IDETGPDHDKTFHCRVSAGDIQ-AEGSGKNKKTAQQDAAHKAL 222


>gi|92113755|ref|YP_573683.1| ribonuclease III [Chromohalobacter salexigens DSM 3043]
 gi|91796845|gb|ABE58984.1| RNAse III [Chromohalobacter salexigens DSM 3043]
          Length = 226

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 113/220 (51%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L +RIGY F + S LE ALTH S      ++ ERLEFLGD I+  +I   LF  F  A
Sbjct: 2   QALSRRIGYQFRDTSRLELALTHRSYG---GKNNERLEFLGDSIVNFVIGEALFQRFPQA 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS     LV  +T +++ARE +L   +R+ S   K       SI AD VE+LI A+
Sbjct: 59  REGQLSRLRARLVKGQTLAELAREFELGECLRLGSGEMKSGGYRRDSILADGVEALIGAI 118

Query: 127 YLDGGIE--VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G++   A        +  A+     ++D KT LQE+  ++    P Y+V    G  
Sbjct: 119 YLDAGMDVAKARVLSWYATRLEAIDLQDNQKDPKTRLQEFLQSRQAALPRYEVVSVEGEA 178

Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223
           H   FT+   +  L     G+  S+R AEQ AA + L+  
Sbjct: 179 HAQVFTIECHVEMLEDHTLGVGSSRRHAEQQAAEKALETL 218


>gi|303248688|ref|ZP_07334942.1| ribonuclease III [Desulfovibrio fructosovorans JJ]
 gi|302489944|gb|EFL49870.1| ribonuclease III [Desulfovibrio fructosovorans JJ]
          Length = 233

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 113/222 (50%), Gaps = 5/222 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63
           + LE  +G+ F    LL  ALTHSS ++   E     ERLEFLGD +L L +S  LF  F
Sbjct: 5   TALENALGHVFVRPELLTTALTHSSYANERGEAAKHNERLEFLGDAVLELSVSEELFARF 64

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGEL++  + LV+  + + +A  L L   I +             S+ +DV E++I
Sbjct: 65  PEAPEGELTLLRSQLVNESSLAAMALRLSLEDHILLGKGEENQGGRTRPSLLSDVFEAVI 124

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            AL+LDGG  VA +FV+  + +           RD K+ LQE+        P Y +    
Sbjct: 125 GALFLDGGYGVAKSFVNATFAEVWPVRSVAPKTRDYKSRLQEYTQKVHKARPVYTLLDSE 184

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GP+HD RFTV +E+        M+ S + AEQ+AA   L++ 
Sbjct: 185 GPEHDKRFTVRLELPDGHALTAMEKSVKKAEQMAARLALEKI 226


>gi|330684635|gb|EGG96340.1| ribonuclease III [Staphylococcus epidermidis VCU121]
          Length = 235

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 5/212 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+ + N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF+      E
Sbjct: 24  LGFEYNNIELYQQAFSHSSFINDFNMDRLDHNERLEFLGDAVLELTVSRYLFDKHPDLPE 83

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+    ++V   +    A ++ L   I +     K       S+ +D  E+ + ALYL
Sbjct: 84  GNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYL 143

Query: 129 DGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           D G+++   F +K               D KT+ QE+ H +      Y++    GP H  
Sbjct: 144 DQGLDIVWDFAEKIIFPYVEDDELDGVVDFKTQFQEFVHRQNKGDVTYRLIKEEGPAHHR 203

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            FT  V +   A A+G   +K+ +EQ AA   
Sbjct: 204 LFTSEVILEKQAVAEGQGKTKKESEQKAAERA 235


>gi|325830746|ref|ZP_08164130.1| ribonuclease III [Eggerthella sp. HGA1]
 gi|325487153|gb|EGC89596.1| ribonuclease III [Eggerthella sp. HGA1]
          Length = 304

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 107/222 (48%), Gaps = 2/222 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
           + +  ++ +GY FA+  LL  A+TH S +     + SYERLEFLGD ILG +++T+ F+ 
Sbjct: 33  KLAVAQEILGYRFADEQLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVATIAFDR 92

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+    +LVS  + S VA  L  A  I   S         + S   +V E++
Sbjct: 93  FHDLDEGGLTRIKVALVSGASLSDVAERLGFADVIVFGSSETGTGRRGLHSALENVYEAV 152

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +AAL+LDGGIE A  FV      R         +      +    + G+TP YK+    G
Sbjct: 153 VAALFLDGGIEAAEGFVRATLIPRMSADMAREPENPKSALQEKLQEDGITPTYKLVETQG 212

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           P HD  F   V       A+G   +K+ AE  AA   L R G
Sbjct: 213 PPHDRTFVAQVFAGSQGLARGTGRTKKEAESQAAKSTLARLG 254


>gi|257791118|ref|YP_003181724.1| ribonuclease III [Eggerthella lenta DSM 2243]
 gi|317488154|ref|ZP_07946728.1| ribonuclease III [Eggerthella sp. 1_3_56FAA]
 gi|257475015|gb|ACV55335.1| ribonuclease III [Eggerthella lenta DSM 2243]
 gi|316912741|gb|EFV34276.1| ribonuclease III [Eggerthella sp. 1_3_56FAA]
          Length = 281

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 107/222 (48%), Gaps = 2/222 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
           + +  ++ +GY FA+  LL  A+TH S +     + SYERLEFLGD ILG +++T+ F+ 
Sbjct: 10  KLAVAQEILGYRFADEQLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVATIAFDR 69

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+    +LVS  + S VA  L  A  I   S         + S   +V E++
Sbjct: 70  FHDLDEGGLTRIKVALVSGASLSDVAERLGFADVIVFGSSETGTGRRGLHSALENVYEAV 129

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +AAL+LDGGIE A  FV      R         +      +    + G+TP YK+    G
Sbjct: 130 VAALFLDGGIEAAEGFVRATLIPRMSADMAREPENPKSALQEKLQEDGITPTYKLVETQG 189

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           P HD  F   V       A+G   +K+ AE  AA   L R G
Sbjct: 190 PPHDRTFVAQVFAGSQGLARGTGRTKKEAESQAAKSTLARLG 231


>gi|229098318|ref|ZP_04229265.1| Ribonuclease 3 [Bacillus cereus Rock3-29]
 gi|229104411|ref|ZP_04235080.1| Ribonuclease 3 [Bacillus cereus Rock3-28]
 gi|229117335|ref|ZP_04246713.1| Ribonuclease 3 [Bacillus cereus Rock1-3]
 gi|228666235|gb|EEL21699.1| Ribonuclease 3 [Bacillus cereus Rock1-3]
 gi|228679109|gb|EEL33317.1| Ribonuclease 3 [Bacillus cereus Rock3-28]
 gi|228685216|gb|EEL39147.1| Ribonuclease 3 [Bacillus cereus Rock3-29]
          Length = 245

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEKIGITFTDEKLLTQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|269926036|ref|YP_003322659.1| ribonuclease III [Thermobaculum terrenum ATCC BAA-798]
 gi|269789696|gb|ACZ41837.1| ribonuclease III [Thermobaculum terrenum ATCC BAA-798]
          Length = 234

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 5/224 (2%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIS 56
           MS+   + TL++R+GY F N  LL+ ALTH S ++      E+ ER EFLGD IL  ++ 
Sbjct: 1   MSSSDSFITLQERLGYKFRNIELLKTALTHRSFANESLEKTETNERFEFLGDSILAFVVG 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F  A EG L+     LV  +  + ++R L +  FI +    R    S   S+ A
Sbjct: 61  EALFRLFPRASEGILTRARAHLVGRKNLADISRTLGIGDFILLGKGARLSGSSQSESVLA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LIAA+YLD  +E   + V +  +    +   +      + +    +         
Sbjct: 121 DALEALIAAVYLDSDLETCRSVVFRLLRLSKEEIEHWLDVKDNKTRLQELSHRLYRTNPI 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            T  + P     F V V+++    AQG   SK  AEQ AA + L
Sbjct: 181 YTVIAAPPVRDNFIVQVKVND-VSAQGEGRSKSEAEQEAARKAL 223


>gi|90424139|ref|YP_532509.1| ribonuclease III [Rhodopseudomonas palustris BisB18]
 gi|90106153|gb|ABD88190.1| RNAse III [Rhodopseudomonas palustris BisB18]
          Length = 272

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 102/217 (47%), Positives = 140/217 (64%), Gaps = 3/217 (1%)

Query: 12  RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           RIG+AFA+ +LL  A TH S    + +  +SY+RLEFLGD +LGL++S +L+  F +A E
Sbjct: 49  RIGHAFADPALLATAFTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLYRAFPNADE 108

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS R   LV  E C+ VAR LDL   I++ +           S+  D+ E++I A++L
Sbjct: 109 GELSKRLADLVRKEACADVARSLDLLDGIKLGTVGAGAGARLRKSVLGDICEAVIGAIFL 168

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG   A +FV + W +R  K  +  RDAKT LQEWA  K   TP Y+   R+GP HDP+
Sbjct: 169 DGGYPAAESFVQRNWLERMRKPVRPLRDAKTILQEWAQGKGLPTPVYREVERTGPHHDPQ 228

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           F V V++ GLAPA+G+  SKRAAE+VAA+ +L REG+
Sbjct: 229 FRVAVDLPGLAPAEGIGGSKRAAEKVAASVMLAREGV 265


>gi|228940937|ref|ZP_04103496.1| Ribonuclease 3 [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228966797|ref|ZP_04127841.1| Ribonuclease 3 [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792896|gb|EEM40454.1| Ribonuclease 3 [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228818773|gb|EEM64839.1| Ribonuclease 3 [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 225

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 5/206 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
            +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF  + 
Sbjct: 2   FQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYP 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+ I 
Sbjct: 62  TMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIG 121

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ALYLD G+E    F+ +    +  +       D K++LQE          EY++    GP
Sbjct: 122 ALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKGP 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
            H+  F   V ++ +A   G   SK+
Sbjct: 182 AHNREFVSRVTLNNVALGLGSGKSKK 207


>gi|296331168|ref|ZP_06873642.1| ribonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|296151812|gb|EFG92687.1| ribonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633]
          Length = 213

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 66/204 (32%), Positives = 98/204 (48%), Gaps = 5/204 (2%)

Query: 25  KALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +A THSS  + ++    E  ERLEFLGD +L L IS  LF  + +  EG+L+    ++V 
Sbjct: 3   QAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVC 62

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
             +   +A EL     + +             ++ ADV E+ I ALYLD G+E   +F+ 
Sbjct: 63  EPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLK 122

Query: 141 KYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            Y   +          D K++LQE+       + EYK+T   GP H+  F  +V + G  
Sbjct: 123 VYVFPKINDGAFSHVMDFKSQLQEYVQRDGKGSLEYKITNEKGPAHNREFEAIVSLKGEP 182

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G   SK+ AEQ AA E L + 
Sbjct: 183 LGVGNGRSKKEAEQHAAQEALAKL 206


>gi|90021888|ref|YP_527715.1| RNAse III [Saccharophagus degradans 2-40]
 gi|89951488|gb|ABD81503.1| RNAse III [Saccharophagus degradans 2-40]
          Length = 226

 Score =  131 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 116/228 (50%), Gaps = 10/228 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      L  R+GY F ++SLL+ AL+H S      ++ ER+EFLGD +L  +I+  LF
Sbjct: 1   MNQND--RLVARLGYTFKDKSLLKLALSHRSYGK---QNNERVEFLGDSLLNFIIAEALF 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +AKEG+L+    +LV  ET +++ARE  L  F+ +     K       SI AD VE
Sbjct: 56  AKFPTAKEGQLTQLRANLVKGETLAEIAREFGLGDFLLLGEGELKSGGFRRASILADAVE 115

Query: 121 SLIAALYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +LI A+YLD    +             +   ++     +DAKT LQE+   +    P Y 
Sbjct: 116 ALIGAIYLDSNSSMPTCRERVLAWYATRLDKVELKATAKDAKTLLQEYLQERKMPLPTYT 175

Query: 177 VTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           V    G  H  +FTV   I+G   P   +  SKR AE++AA ++L + 
Sbjct: 176 VLAEGGEAHSRQFTVECTITGKSKPCSAVGNSKRIAEKLAAEKMLSQL 223


>gi|88797948|ref|ZP_01113535.1| ribonuclease III [Reinekea sp. MED297]
 gi|88779145|gb|EAR10333.1| ribonuclease III [Reinekea sp. MED297]
          Length = 219

 Score =  131 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 84/217 (38%), Positives = 123/217 (56%), Gaps = 6/217 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           K IGY F + SLLE+ALTH S +   +++ ERLEFLGD IL   I+  L++ F +AKEG+
Sbjct: 3   KAIGYQFESESLLEQALTHRSYA---RKNNERLEFLGDAILNCTIAQALYHQFPNAKEGQ 59

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           +S     LV  +T +++ RE +L  F+R+ S   K       SI AD VE++I A+ LD 
Sbjct: 60  MSRLRAHLVKGDTLAEIGREFELGEFLRLGSGELKSGGFRRDSILADAVEAIIGAISLDA 119

Query: 131 GIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
            +  A   +  ++++R   L   +  +D+KT LQE+  A+    PEY+V   +G  H   
Sbjct: 120 DLGKAQQVLLSWYEERLSNLDLKENIKDSKTRLQEFLQARRLPLPEYQVKTITGEAHQQE 179

Query: 189 FTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREG 224
           FTV  ++  L  P  G+  S+R AEQ AA   LK  G
Sbjct: 180 FTVHCQVESLETPMVGVGSSRRMAEQEAANAALKALG 216


>gi|110834492|ref|YP_693351.1| ribonuclease III [Alcanivorax borkumensis SK2]
 gi|123345468|sp|Q0VP19|RNC_ALCBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|110647603|emb|CAL17079.1| ribonuclease III [Alcanivorax borkumensis SK2]
          Length = 228

 Score =  131 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 112/224 (50%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+    + L  R+GY F + SLLE ALTH S+S     +YERLEFLGD  LG +IS  LF
Sbjct: 1   MNG-DLNRLMARLGYQFQDLSLLELALTHRSVSRH--RNYERLEFLGDAQLGQIISVALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EG+L+    SLV  +T + VAREL L  ++ +     K       SI AD +E
Sbjct: 58  EQFPEAAEGQLTRMRASLVRGQTLALVARELGLGEYLVLGGGELKSGGFRRDSILADALE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178
           S+I A+ LDGG       V  ++  R         ++DAKT LQEW  A+    P Y+VT
Sbjct: 118 SIIGAMLLDGGEPRCREVVLAWFAPRLDAISPQSAQKDAKTRLQEWLQARKFELPTYEVT 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLK 221
              G      F V   +            S+R AEQ AA+  L+
Sbjct: 178 QVEGLAPKQTFDVQCSLDNVQQIFIAQGASRRKAEQEAASLALE 221


>gi|226322326|ref|ZP_03797844.1| hypothetical protein COPCOM_00087 [Coprococcus comes ATCC 27758]
 gi|225209248|gb|EEG91602.1| hypothetical protein COPCOM_00087 [Coprococcus comes ATCC 27758]
          Length = 252

 Score =  131 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 75/213 (35%), Positives = 105/213 (49%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           MS      LE++IGY F +  LL  A+THSS  +       +  ERLEFLGD +L L+ S
Sbjct: 22  MSR-NVKELEEKIGYNFKDSHLLRHAVTHSSYVNEKHMKKADCNERLEFLGDAVLELISS 80

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF    +  EGEL+    S+V  +  +  AR+L+L S++ +          F  SI +
Sbjct: 81  EYLFFENQTMPEGELTKLRASMVCEKALAFCARDLELGSYLLLGKGEDATGGRFRESITS 140

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LI A+YLDGG   A  F+ KY          F  D+KT LQE           Y+
Sbjct: 141 DALEALIGAIYLDGGFANAKEFILKYILNDLEGKRLFY-DSKTILQEMVQGGQEKGIVYQ 199

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +    GPDH+  F V   I G A   G+  +K+
Sbjct: 200 LVGEEGPDHNKSFRVEAVIGGEAFGCGIGRTKK 232


>gi|189184858|ref|YP_001938643.1| ribonuclease III [Orientia tsutsugamushi str. Ikeda]
 gi|189181629|dbj|BAG41409.1| ribonuclease III [Orientia tsutsugamushi str. Ikeda]
          Length = 246

 Score =  131 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 76/218 (34%), Positives = 123/218 (56%), Gaps = 2/218 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  TL+  IGY F +  LL +ALTH SI+ + Y ++Y+RLEFLGD IL L+IS  LF +F
Sbjct: 18  KLDTLQSEIGYNFNSIDLLIEALTHPSINQYGYTKNYQRLEFLGDVILNLVISETLFKNF 77

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+     LV  E+   +A++++L  +I ++++  K       +   + +E++I
Sbjct: 78  SHYNEGKLAKSRAFLVCNESICLIAQKINLHKYIIMTANEEKCGGRSNKNNIENTMEAVI 137

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A+YLDGGI V    V+  WK        +   D K+ LQEW+ +K    P Y ++ ++G
Sbjct: 138 GAVYLDGGIHVIKDIVNSLWKVLIKDHELYLIADPKSALQEWSQSKNFGIPTYTLSSKTG 197

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             H P F V+V++  L P  G   + + A++ AA  +L
Sbjct: 198 QSHSPLFEVMVKVGRLEPQYGKGTTIKTAQKNAAQLML 235


>gi|294784571|ref|ZP_06749860.1| ribonuclease III [Fusobacterium sp. 3_1_27]
 gi|294487787|gb|EFG35146.1| ribonuclease III [Fusobacterium sp. 3_1_27]
          Length = 234

 Score =  131 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 117/231 (50%), Gaps = 9/231 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M       LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++
Sbjct: 1   MK--NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ ++ +A EG ++     +VS    ++++R++ +  F+ +S            SI A
Sbjct: 59  EYLYKNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+++ A+Y+D  ++ A  F   + KQ      +     D K+ LQE+   +F   P 
Sbjct: 119 DSFEAILGAVYMDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           Y++    GPDH   F + V +      + +  +K+ AEQ++A  +  + G+
Sbjct: 179 YELIAERGPDHMKEFEIQVIVGNYKE-KAVARNKKKAEQLSAKALCIKLGV 228


>gi|254428849|ref|ZP_05042556.1| ribonuclease III [Alcanivorax sp. DG881]
 gi|196195018|gb|EDX89977.1| ribonuclease III [Alcanivorax sp. DG881]
          Length = 228

 Score =  131 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 112/224 (50%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+    + L  R+GY F + SLLE ALTH S+S     +YERLEFLGD  LG +IS  LF
Sbjct: 1   MNG-DLNRLMARLGYQFQDISLLELALTHRSVSRH--RNYERLEFLGDAQLGQIISVALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EG+L+    SLV  +T + VAREL L  ++ +     K       SI AD +E
Sbjct: 58  EQFPEAAEGQLTRMRASLVRGQTLALVARELGLGEYLVLGGGELKSGGFRRDSILADALE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178
           S+I A+ LDGG       V  ++  R         ++DAKT LQEW  A+    P Y+VT
Sbjct: 118 SIIGAMLLDGGESRCREVVLCWFAPRLDAISPQSAQKDAKTRLQEWLQARKFELPTYEVT 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLK 221
              G      F V   +            S+R AEQ AA+  L+
Sbjct: 178 QVEGLAPKQTFDVQCSLDQVQQIFIAQGASRRKAEQEAASLALE 221


>gi|289550987|ref|YP_003471891.1| Ribonuclease III [Staphylococcus lugdunensis HKU09-01]
 gi|315658482|ref|ZP_07911354.1| ribonuclease III [Staphylococcus lugdunensis M23590]
 gi|289180519|gb|ADC87764.1| Ribonuclease III [Staphylococcus lugdunensis HKU09-01]
 gi|315496811|gb|EFU85134.1| ribonuclease III [Staphylococcus lugdunensis M23590]
          Length = 243

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 99/227 (43%), Gaps = 8/227 (3%)

Query: 1   MSALRYSTLEKR---IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGL 53
           M        E++   +G  F N  L ++A +HSS  + +     E  ERLEFLGD +L +
Sbjct: 9   MIKDFRQRFEQKMNELGIHFDNIKLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLEV 68

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            +S  LF+   +  EG L+    ++V   +    A ++ L   I +     K       S
Sbjct: 69  TVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIQLNQLILLGKGEEKTGGRTRPS 128

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVT 172
           + +D  E+ + ALYLD G+     F +K               D KT+ QE+ H++    
Sbjct: 129 LISDAFEAFVGALYLDQGLGAVWHFAEKVIFPYVEDDELIGVVDFKTQFQEFVHSQNKGD 188

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             Y++    GP H   FT  V +   A A G   +K+ +EQ AA   
Sbjct: 189 VMYRLVKEEGPAHHRLFTSEVILEQQAIAHGQGKTKKESEQKAAERA 235


>gi|303326944|ref|ZP_07357386.1| ribonuclease III [Desulfovibrio sp. 3_1_syn3]
 gi|302862932|gb|EFL85864.1| ribonuclease III [Desulfovibrio sp. 3_1_syn3]
          Length = 253

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 109/221 (49%), Gaps = 5/221 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFD 64
            LE+++G+ FA   LL+ ALTHSS ++ Y       ER EFLGD +L L +S  LF  F 
Sbjct: 18  ALEEKLGHVFARPELLDLALTHSSWANEYSGGQHHNERQEFLGDAVLELCVSWELFRRFP 77

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A+EGEL+     LVS  + ++ ARE  L S +++     +       S+ +DV+E+++A
Sbjct: 78  EAREGELTKLRARLVSTVSLAERAREFGLDSLLKLGKGEERQGGRSRDSVLSDVLEAVLA 137

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+Y DGG   A   V   +     ++     R+D KT LQE A   F   P Y      G
Sbjct: 138 AVYEDGGFTAAQAAVAHIFAPHWPRAAGEPQRKDYKTRLQEVAQQLFRERPVYVQLASHG 197

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P+H   F V + +           S + AEQ AA + L   
Sbjct: 198 PEHAKIFEVSLHLPDGREFTASGTSCKKAEQEAARQALNSL 238


>gi|153208682|ref|ZP_01946929.1| ribonuclease III [Coxiella burnetii 'MSU Goat Q177']
 gi|212219222|ref|YP_002306009.1| ribonuclease III [Coxiella burnetii CbuK_Q154]
 gi|226741367|sp|B6J4J9|RNC_COXB1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|120575793|gb|EAX32417.1| ribonuclease III [Coxiella burnetii 'MSU Goat Q177']
 gi|212013484|gb|ACJ20864.1| ribonuclease III [Coxiella burnetii CbuK_Q154]
          Length = 233

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 115/225 (51%), Gaps = 7/225 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+    + L +R+G+ F N  LL+ ALTH S   S  ++ ERLEFLGD +LG +I++ L+
Sbjct: 1   MN--HLNKLMERLGHQFNNLELLKIALTHRS---SGADNNERLEFLGDSVLGFIIASELY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                A+EG+LS    S+V+ +  +Q++ +L +  ++++    +K       SI AD +E
Sbjct: 56  QRRPQAREGDLSRMRASMVNGDELAQMSIKLGINEYLQLGVGEQKSGGKRRRSILADALE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +++ A+Y+D G+E     V  ++ +R     K   +     L +       +        
Sbjct: 116 AIVGAIYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVK 175

Query: 180 RSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223
            +G  H   FTV   + GL    +G++ ++R AEQ+AA   L+  
Sbjct: 176 ITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLELL 220


>gi|71281241|ref|YP_270777.1| ribonuclease III [Colwellia psychrerythraea 34H]
 gi|90101619|sp|Q47WP5|RNC_COLP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71146981|gb|AAZ27454.1| ribonuclease III [Colwellia psychrerythraea 34H]
          Length = 266

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 114/224 (50%), Gaps = 10/224 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +    + L K++GY F    LL +ALTH S         ERLEFLGD ILG +I+  L++
Sbjct: 4   NPHNLARLTKKLGYEFNEPLLLVQALTHRSA---KGAHNERLEFLGDSILGFVIAEALYD 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+L+   +SLV   T ++VAR+ +L   + +     K       SI  D +E+
Sbjct: 61  KFPKHDEGDLTRMRSSLVKGVTLAEVARDFNLGECLILGPGELKSGGHHRESILEDAIEA 120

Query: 122 LIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A+YLD  IE            +   +K G  ++D KT LQE+   +    P Y+V  
Sbjct: 121 IIGAVYLDSNIECCKALILSWFERRLMVIKPGNEQKDPKTRLQEFLQGRKIPLPTYEVID 180

Query: 180 RSGPDHDPRFTVVVE---ISGLAPAQGMDCSKRAAEQVAAAEVL 220
            +G  H+  FTV  +   IS +  A+G   S+R AEQ AA ++L
Sbjct: 181 TTGQSHNQEFTVRCQTSVISEVVIAKGT--SRRKAEQEAAQQIL 222


>gi|227550768|ref|ZP_03980817.1| ribonuclease III [Enterococcus faecium TX1330]
 gi|314937654|ref|ZP_07844980.1| ribonuclease III [Enterococcus faecium TX0133a04]
 gi|314942847|ref|ZP_07849660.1| ribonuclease III [Enterococcus faecium TX0133C]
 gi|314948017|ref|ZP_07851421.1| ribonuclease III [Enterococcus faecium TX0082]
 gi|314950935|ref|ZP_07854004.1| ribonuclease III [Enterococcus faecium TX0133A]
 gi|314991417|ref|ZP_07856894.1| ribonuclease III [Enterococcus faecium TX0133B]
 gi|314995062|ref|ZP_07860182.1| ribonuclease III [Enterococcus faecium TX0133a01]
 gi|227180086|gb|EEI61058.1| ribonuclease III [Enterococcus faecium TX1330]
 gi|313590788|gb|EFR69633.1| ribonuclease III [Enterococcus faecium TX0133a01]
 gi|313593897|gb|EFR72742.1| ribonuclease III [Enterococcus faecium TX0133B]
 gi|313596944|gb|EFR75789.1| ribonuclease III [Enterococcus faecium TX0133A]
 gi|313598319|gb|EFR77164.1| ribonuclease III [Enterococcus faecium TX0133C]
 gi|313643031|gb|EFS07611.1| ribonuclease III [Enterococcus faecium TX0133a04]
 gi|313645615|gb|EFS10195.1| ribonuclease III [Enterococcus faecium TX0082]
          Length = 231

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 5/214 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M       L++     F + +LLE+A THSS  + ++       ERLEFLGD +L L++S
Sbjct: 4   MDNQLTKELKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVS 63

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+L+    ++V  ++ S+ A+E     ++ +             ++  
Sbjct: 64  QYLFRLYPHLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLC 123

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD G +    F++K    +          D KT+LQE       V+ EY
Sbjct: 124 DLFEAFLGALYLDQGFDTTHAFIEKVIFPKVKAGAFSHEMDHKTKLQEVLQKSGDVSIEY 183

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           ++    GP H+  F + V +       G   SK+
Sbjct: 184 RLINEEGPAHERVFWIEVYVDDQLIGTGQGKSKK 217


>gi|254302541|ref|ZP_04969899.1| ribonuclease III [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148322733|gb|EDK87983.1| ribonuclease III [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 234

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 116/231 (50%), Gaps = 9/231 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M       LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++
Sbjct: 1   MK--NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ ++ +A EG ++     +VS    ++++R++ +  F+ +S            SI A
Sbjct: 59  EYLYKNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILA 118

Query: 117 DVVESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           D  E+++ A+Y+D  +E A  F           ++  +   D K+ LQE+   +F   P 
Sbjct: 119 DSFEAILGAVYIDSNLEEARVFALSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           Y++    GPDH   F + V +      + +  +K+ AEQ++A  +  + G+
Sbjct: 179 YELVAERGPDHMKEFEIQVIVGNYKE-KAVARNKKKAEQLSAKALCIKLGV 228


>gi|83753776|pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
           Aeolicus Complexed With Double Stranded Rna At 2.1-
           Angstrom Resolution
 gi|83753777|pdb|1YZ9|B Chain B, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
           Aeolicus Complexed With Double Stranded Rna At 2.1-
           Angstrom Resolution
          Length = 221

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 115/223 (51%), Gaps = 14/223 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LEK++GY F ++SLLEKALTH S S   +E YE LEFLGD ++   I  LL  +  +
Sbjct: 4   LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG LS     L+S E  + +A++L+L  FIR+             +I  DV ++L AA
Sbjct: 62  KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFQALWAA 115

Query: 126 LYLDGGIEVAGTFVDKYWKQRALK-----SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +Y+D G +   T    Y   +         G+ ++D KT LQE    ++   PEY++   
Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GP H  +F V  +I       G   SK+ AEQ AA E++K  
Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIKLL 217


>gi|154707005|ref|YP_001423899.1| ribonuclease III [Coxiella burnetii Dugway 5J108-111]
 gi|165919331|ref|ZP_02219417.1| ribonuclease III [Coxiella burnetii RSA 334]
 gi|189043305|sp|A9KFA0|RNC_COXBN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|154356291|gb|ABS77753.1| ribonuclease III [Coxiella burnetii Dugway 5J108-111]
 gi|165916991|gb|EDR35595.1| ribonuclease III [Coxiella burnetii RSA 334]
          Length = 233

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 115/225 (51%), Gaps = 7/225 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+    + L +R+G+ F N  LL+ ALTH S   S  ++ ERLEFLGD +LG +I++ L+
Sbjct: 1   MN--HLNKLMERLGHQFNNLELLKIALTHRS---SGADNNERLEFLGDSVLGFIIASELY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                A+EG+LS    S+V+ +  +Q++ +L +  ++++    +K       SI AD +E
Sbjct: 56  QRRPQAREGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +++ A+Y+D G+E     V  ++ +R     K   +     L +       +        
Sbjct: 116 AIVGAIYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVK 175

Query: 180 RSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223
            +G  H   FTV   + GL    +G++ ++R AEQ+AA   L+  
Sbjct: 176 ITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLELL 220


>gi|3176883|gb|AAD02939.1| RNase III [Bradyrhizobium japonicum]
          Length = 231

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 98/225 (43%), Positives = 142/225 (63%), Gaps = 3/225 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60
           +R   L +  G+ FA+ +LL + +TH S   S +   +SY+RLEFLGD +LGL++S +L+
Sbjct: 1   MRTRRLRRASGHTFADPNLLMQGITHVSALKSGRKRGDSYQRLEFLGDHVLGLVVSDMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F +A EGELS R   LV  E+C+ VA+ L L   I++ S           S+  D+ E
Sbjct: 61  HAFPNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSADARLRKSVLGDICE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++I A++LDGG   A  FV + W +R  K  +  RD KT LQEWA  K   TP Y+   R
Sbjct: 121 AVIGAIFLDGGHAAAAEFVKRNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVER 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           +GP HDP+F V V++ GLAPA+G+  SKRAAE+VAA+ +++REG+
Sbjct: 181 TGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASVMIEREGV 225


>gi|56698030|ref|YP_168401.1| ribonuclease III [Ruegeria pomeroyi DSS-3]
 gi|81349082|sp|Q5LNK5|RNC_SILPO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56679767|gb|AAV96433.1| ribonuclease III [Ruegeria pomeroyi DSS-3]
          Length = 225

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 90/217 (41%), Positives = 129/217 (59%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
              E R+GY+F    LL +ALTH SIS S ++  +RLEFLGDR+LGL+++T L      A
Sbjct: 8   KAFEARLGYSFERPELLVRALTHGSISSSTRQDNQRLEFLGDRVLGLVMATALLEADKDA 67

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+ RFN+LV  ETC++VARE DL + +++             ++  D +E++IAA+
Sbjct: 68  TEGQLAPRFNALVRKETCAEVAREADLGAVLKLGRSEMMSGGRRKLALLGDAMEAVIAAV 127

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y DGG   A   + + W  R  +     RDAKT LQEWA A+    P Y++  RSGPDH 
Sbjct: 128 YRDGGFAAAEAVILRLWGARVHQVEADARDAKTALQEWAQARGQTPPRYELVKRSGPDHA 187

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P FT++ E++    A+    +KR AEQ AA ++L   
Sbjct: 188 PVFTILAELADGRRAEATAGAKRQAEQAAARKLLDSL 224


>gi|212212136|ref|YP_002303072.1| ribonuclease III [Coxiella burnetii CbuG_Q212]
 gi|226741368|sp|B6IYZ9|RNC_COXB2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|212010546|gb|ACJ17927.1| ribonuclease III [Coxiella burnetii CbuG_Q212]
          Length = 233

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 7/225 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+    + L +R+G+ F N  LL+ ALTH S   S  ++ ERLEFLGD +LG +I++ L+
Sbjct: 1   MN--HLNKLMERLGHQFNNLELLKIALTHRS---SGADNNERLEFLGDSVLGFIIASELY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                A+EG+LS    S+V+ +  +Q++ +L +  ++++    +K       SI AD +E
Sbjct: 56  QRRPQAREGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +++ ++Y+D G+E     V  ++ +R     K   +     L +       +        
Sbjct: 116 AIVGSIYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVK 175

Query: 180 RSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223
            +G  H   FTV   + GL    +G++ ++R AEQ+AA   L+  
Sbjct: 176 ITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLELL 220


>gi|269797766|ref|YP_003311666.1| ribonuclease III [Veillonella parvula DSM 2008]
 gi|282849040|ref|ZP_06258429.1| ribonuclease III [Veillonella parvula ATCC 17745]
 gi|294791672|ref|ZP_06756820.1| ribonuclease III [Veillonella sp. 6_1_27]
 gi|294793530|ref|ZP_06758667.1| ribonuclease III [Veillonella sp. 3_1_44]
 gi|269094395|gb|ACZ24386.1| ribonuclease III [Veillonella parvula DSM 2008]
 gi|282581315|gb|EFB86709.1| ribonuclease III [Veillonella parvula ATCC 17745]
 gi|294455100|gb|EFG23472.1| ribonuclease III [Veillonella sp. 3_1_44]
 gi|294456902|gb|EFG25264.1| ribonuclease III [Veillonella sp. 6_1_27]
          Length = 246

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 110/224 (49%), Gaps = 6/224 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
              L  R+    ++ S+++ A TH+S ++ ++       +RLEFLGD +L L+I   LF 
Sbjct: 19  LHELVARLDIPVSDISIIDCAFTHTSYANEHKSKHIHHNQRLEFLGDAVLDLIIGEYLFK 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG L+    + V  ++ + V+R L L  ++ +    R    +   SI AD  ES
Sbjct: 79  TYPDMAEGNLTKIKAATVCEDSLASVSRSLQLGQYLLLGHGERASGGNDRNSILADTFES 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+Y+    + A  FV K+     ++   GK  +D KT LQE+          Y +  
Sbjct: 139 LIGAIYISTDYQTAMAFVLKHLTTYIMQALEGKRGKDYKTLLQEYVQRDGDKHIVYHLLS 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            SGPDH   F + VEI+G+    G   SK+ AEQ AA   L++ 
Sbjct: 199 ESGPDHAKTFHMEVEINGVTYEAGSGKSKKIAEQHAAQLTLEKL 242


>gi|292490849|ref|YP_003526288.1| ribonuclease III [Nitrosococcus halophilus Nc4]
 gi|291579444|gb|ADE13901.1| ribonuclease III [Nitrosococcus halophilus Nc4]
          Length = 231

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 115/221 (52%), Gaps = 6/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L  ++GY F   +LL  A+TH S +     + ERLEFLGD IL  LI+  L+  F  
Sbjct: 5   LRRLCGKLGYRFTEPALLRCAITHRSAAKE---NNERLEFLGDSILNFLIAEFLYIRFPK 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EG+LS    +LV  ET +++AREL++   + +     K      TSI AD  E++I A
Sbjct: 62  AQEGKLSRLRATLVKGETLAELARELEIGDHLILGPGELKSGGYRRTSILADAFEAVIGA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGG+E     V   ++ R          +D KT LQE+  A+    P+Y+V+   G 
Sbjct: 122 VYLDGGLEACRKLVASLYEDRLEALTSEVLLKDPKTRLQEYLQARQLPLPDYRVSAVRGE 181

Query: 184 DHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223
            HD  F V   I+   P+  G   S+R AEQ AA + L+  
Sbjct: 182 AHDQVFQVECIINDTFPSVVGTGRSRRKAEQDAATQALELL 222


>gi|319892231|ref|YP_004149106.1| Ribonuclease III [Staphylococcus pseudintermedius HKU10-03]
 gi|317161927|gb|ADV05470.1| Ribonuclease III [Staphylococcus pseudintermedius HKU10-03]
 gi|323464672|gb|ADX76825.1| ribonuclease III [Staphylococcus pseudintermedius ED99]
          Length = 243

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/220 (30%), Positives = 106/220 (48%), Gaps = 5/220 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
            ++   K +   + N SL ++A +HSS  + +     E  ERLEFLGD +L L +S  LF
Sbjct: 16  NFAKKMKALNLTYDNMSLYQQAFSHSSFINDFNMDRTEHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGEL+    ++V   +    A+ ++L   I +     K       S+ ADV E
Sbjct: 76  DAFPKLPEGELTKMRANIVCEPSLVVFAQHINLMPLILLGKGEEKTGGRTRPSLVADVFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + + ALYLD G+E    F +                D KT+ QE+ H  +    +Y+V  
Sbjct: 136 AFVGALYLDQGLEAVWQFAEAVIFPHVKGRQLIGVVDFKTKFQEYVHQNYLGVIKYRVAK 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             GP H+  FT  + ++G A ++G   +K+ +EQ AA + 
Sbjct: 196 EEGPAHNKTFTSEILLNGEAVSRGEGRTKKESEQKAAEQA 235


>gi|223986082|ref|ZP_03636108.1| hypothetical protein HOLDEFILI_03416 [Holdemania filiformis DSM
           12042]
 gi|223961955|gb|EEF66441.1| hypothetical protein HOLDEFILI_03416 [Holdemania filiformis DSM
           12042]
          Length = 247

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/216 (31%), Positives = 104/216 (48%), Gaps = 6/216 (2%)

Query: 4   LRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59
           ++    LE R G    +  L+E+A  HSS  + +++     ERLEF+GD +L L +S  L
Sbjct: 1   MKICEWLEAR-GIHCKDSRLIEQAFVHSSYVNEHKQLKHDNERLEFMGDAVLQLWVSDKL 59

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F       EG ++     LV  E  +  AR+L L SF+++     K       SI AD+ 
Sbjct: 60  FRLDPPLDEGHMTTFRAQLVCEEALAIYARQLQLNSFLKLGVGEEKTGGRERDSIIADMF 119

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+++ ALY D G+E     + +      +        D KT+LQE+  +    T  Y+V 
Sbjct: 120 EAMLGALYEDSGMEPIDNILTEVITPHLSHPEEPIIVDYKTKLQEYVQSDSRKTVTYEVI 179

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
             +GP + P F V V++ G+    G   SK+ AEQ 
Sbjct: 180 NTTGPSNKPEFEVQVKLEGIILGTGKGNSKKKAEQK 215


>gi|15606266|ref|NP_213645.1| RNase III [Aquifex aeolicus VF5]
 gi|7531189|sp|O67082|RNC_AQUAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|83753752|pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double-Stranded Rna At 2.5-Angstrom
           Resolution
 gi|83753753|pdb|1YYK|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double-Stranded Rna At 2.5-Angstrom
           Resolution
 gi|83753764|pdb|1YYW|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double Stranded Rna At 2.8-Angstrom
           Resolution
 gi|83753765|pdb|1YYW|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double Stranded Rna At 2.8-Angstrom
           Resolution
 gi|83753766|pdb|1YYW|C Chain C, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double Stranded Rna At 2.8-Angstrom
           Resolution
 gi|83753767|pdb|1YYW|D Chain D, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double Stranded Rna At 2.8-Angstrom
           Resolution
 gi|160877674|pdb|2NUE|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 2.9-Angstrom Resolution
 gi|160877675|pdb|2NUE|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 2.9-Angstrom Resolution
 gi|160877678|pdb|2NUF|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 2.5-Angstrom Resolution
 gi|160877679|pdb|2NUF|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 2.5-Angstrom Resolution
 gi|160877684|pdb|2NUG|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 1.7-Angstrom Resolution
 gi|160877685|pdb|2NUG|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 1.7-Angstrom Resolution
 gi|2983469|gb|AAC07049.1| RNase III [Aquifex aeolicus VF5]
          Length = 221

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 115/223 (51%), Gaps = 14/223 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LEK++GY F ++SLLEKALTH S S   +E YE LEFLGD ++   I  LL  +  +
Sbjct: 4   LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG LS     L+S E  + +A++L+L  FIR+             +I  DV E+L AA
Sbjct: 62  KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFEALWAA 115

Query: 126 LYLDGGIEVAGTFVDKYWKQRALK-----SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +Y+D G +   T    Y   +         G+ ++D KT LQE    ++   PEY++   
Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GP H  +F V  +I       G   SK+ AEQ AA E++K  
Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIKLL 217


>gi|315924201|ref|ZP_07920427.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622603|gb|EFV02558.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 7/222 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M AL+   L++ IGY F N++ L +ALTHSS  +  +++ ERLE+LGD +L L IS  LF
Sbjct: 1   MEALK---LQQSIGYIFKNQAYLHEALTHSSHGN-SEKNNERLEYLGDAVLELSISDYLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+++    S+V +E+ SQ AR L L +++ +             SI  +  E
Sbjct: 57  -KHFDFDEGKMTKLRASIVCSESLSQAARRLHLGNYLHLGKGEVISGGRSRQSILENAFE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A++LD     +     +        +   R   D KT LQE    +     EY + 
Sbjct: 116 AMLGAIFLDSDYSTSQKKAIELLSDNIEMAIAGRLTNDYKTALQELIQKQSDHVIEYVLD 175

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              GP+HD  F V + I+G   + G   +K+ AEQ AA + L
Sbjct: 176 KADGPEHDKTFFVTLMINGQMSSNGRGKTKKEAEQQAAKKSL 217


>gi|288958023|ref|YP_003448364.1| ribonuclease III [Azospirillum sp. B510]
 gi|288910331|dbj|BAI71820.1| ribonuclease III [Azospirillum sp. B510]
          Length = 261

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 80/233 (34%), Positives = 129/233 (55%), Gaps = 10/233 (4%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSI----------SHSYQESYERLEFLGDRILG 52
           +   + L + +G+ F+N +LL  A+TH S+                +YERLEFLGDR++G
Sbjct: 25  SADVAGLARALGHEFSNPTLLCDAVTHPSLMGLERTGRKGHKGPGIAYERLEFLGDRVVG 84

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L+++  L   +   +EG L+ R  +LV  E+  +VA  + L +++R+S    +       
Sbjct: 85  LVVAQWLLERYPDEREGALAKRHAALVRRESLGRVADAIGLGAYLRLSPAEAQSGGRENR 144

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
           +I  D  E+++ A+YLDGG+E    FV +       K+     D+KT LQEWA  +    
Sbjct: 145 TILGDACEAVLGAMYLDGGLEPVTRFVRQALAGEIDKATPPPLDSKTTLQEWAQGRGKPL 204

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           P Y++T RSGP H+P F V V ++G+ P  G   SKR AE+ AA+ +L++ G+
Sbjct: 205 PRYELTERSGPAHEPLFVVAVHVAGMDPVSGSGSSKRIAEKKAASALLRQVGV 257


>gi|254785337|ref|YP_003072766.1| ribonuclease III [Teredinibacter turnerae T7901]
 gi|237684548|gb|ACR11812.1| ribonuclease III [Teredinibacter turnerae T7901]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 83/227 (36%), Positives = 121/227 (53%), Gaps = 6/227 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           S  + + L K + Y F++ SLLEKAL+H S+      + ERLEFLGD +L  LI+  L+ 
Sbjct: 5   SKTKLNQLSKALNYTFSDISLLEKALSHRSVG---SNNNERLEFLGDSLLNFLIAENLYQ 61

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS    SLV  ET +++A++ DL  F+ +     K       SI AD VE+
Sbjct: 62  RFPKAREGDLSRLRASLVKGETLAELAKDFDLGEFLYLGEGELKSGGFRRASILADAVEA 121

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YL+ G++     V  ++ +R  A+      +D KT LQE+        P Y V  
Sbjct: 122 LIGAIYLESGMDRCRDTVLHWFGERLDAIDLNSSVKDPKTRLQEYLQELRQPLPVYTVES 181

Query: 180 RSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           + G  H P F V  +I            SKR AE++AAA +LK+ G+
Sbjct: 182 QLGQAHSPEFQVSCDIGRSQGKTVATSSSKRNAEKLAAAAMLKQLGV 228


>gi|183221945|ref|YP_001839941.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189912013|ref|YP_001963568.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167776689|gb|ABZ94990.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167780367|gb|ABZ98665.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 242

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 109/227 (48%), Gaps = 7/227 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
              L+     +F + SLL  A  H S ++   +      ERLEFLGD +LG+L +  L+ 
Sbjct: 17  LQELQSITDTSFKDISLLHLAFVHRSFANEDSDRYLSDNERLEFLGDSVLGILAAEYLYK 76

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                KEG L+   + +VSA   +++AR      F+ +    + +      ++QAD  E+
Sbjct: 77  SLPKGKEGILAKLKSKMVSAPAIAKLARFYRFPDFLLLGKGEK-EKGEANLNLQADCFEA 135

Query: 122 LIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            + ALYLD G+     F        ++ ++S +  +D KT LQE+   K+   PEY +  
Sbjct: 136 FLGALYLDQGLNSCRIFLTPHFQTMEKGVESAEETKDYKTILQEYCQKKWKKLPEYILLK 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
             GPDHD  F+V V       + G   +KR AEQ+AA   L+   + 
Sbjct: 196 EEGPDHDKDFSVSVSCENYFQSNGDGKNKRRAEQMAAKAALRILKLL 242


>gi|134045095|ref|YP_001096581.1| ribonuclease III [Methanococcus maripaludis C5]
 gi|132662720|gb|ABO34366.1| RNAse III [Methanococcus maripaludis C5]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M    +  L  ++   F + ++ ++A  HSS  +  +    E  ERLE+LGD +L L+I 
Sbjct: 1   MK--NFEKLLSKLDIKFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLELIII 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF   +   EGE+S      V        A++L+  ++I +             +I +
Sbjct: 59  EYLFKKENL-SEGEMSKLRAKYVCESALFTYAKKLNFNNYILLGKGELNSKGYNKPAIIS 117

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           DV E+ IAA+YLD G++ A  FV         +S K          +        T +Y 
Sbjct: 118 DVFEAFIAAIYLDQGLDSAKKFVYNNIIPIIEESSKELFIDHKTRLQELPELNNKTIKYV 177

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +G  HD +F + V+       +G+  SK+ AE  AA   L + 
Sbjct: 178 KLEEAGKPHDKKFVIAVKSGQKMLGKGIGKSKKEAEMKAAKNALLKL 224


>gi|229162785|ref|ZP_04290742.1| Ribonuclease 3 [Bacillus cereus R309803]
 gi|228620667|gb|EEK77536.1| Ribonuclease 3 [Bacillus cereus R309803]
          Length = 245

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|222529151|ref|YP_002573033.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725]
 gi|222455998|gb|ACM60260.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725]
          Length = 222

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/218 (29%), Positives = 105/218 (48%), Gaps = 1/218 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +EK +GY F +++LL  ALTH S +HS +  YERLEFLGD  L L++S  LF HF   
Sbjct: 2   EEIEKALGYKFMDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVHFPEL 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V ++T S++A +L+L + I      + +      SI  DVVE++  A+
Sbjct: 62  SEGELTNIRAAVVCSQTLSKIAEKLNLKNHIIFGKREKMEKFHENKSILTDVVEAIFGAI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +++ G E     +    K    K+   +     + +     +     +         +  
Sbjct: 122 FIESGFEKLEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEFVQKKGQKKIVYKDYEIIE-K 180

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             F   + I G   ++G   SK+ A+Q AA + L   G
Sbjct: 181 KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218


>gi|115377692|ref|ZP_01464885.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1]
 gi|310821555|ref|YP_003953913.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1]
 gi|115365298|gb|EAU64340.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1]
 gi|309394627|gb|ADO72086.1| Ribonuclease III [Stigmatella aurantiaca DW4/3-1]
          Length = 240

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 111/233 (47%), Gaps = 10/233 (4%)

Query: 1   MSALRYST----LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILG 52
           M           LE R+G  F  + L   ALTH S  + +++      ERLEFLGD ++ 
Sbjct: 1   MEKQSLQERVQTLETRLGVPFLRKDLGLAALTHKSYFNEHRDAGLQDNERLEFLGDAVVD 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L IS  L   F  A EGELS     +V+ E  +++AR L L   + +             
Sbjct: 61  LAISHRLMERFPLAAEGELSKLRALIVNEEGLARIARRLSLGELLLLGRGEEMTGGREKN 120

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFG 170
           S+ AD +E+++ A++L  G+E     VD+++ +      + R   D KT+LQE A  +  
Sbjct: 121 SLLADALEAVVGAVFLGAGMEPVMVLVDQHFAEALDGVAQGRSGLDYKTKLQEDAQTRLK 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V P Y+V   +GPDH+  F V V I     A+    +K+ AEQ AA   L   
Sbjct: 181 VPPRYRVVAEAGPDHEKTFEVEVSIGSELYARATGRNKKEAEQAAARATLDML 233


>gi|94502127|ref|ZP_01308628.1| ribonuclease III [Oceanobacter sp. RED65]
 gi|94425729|gb|EAT10736.1| ribonuclease III [Oceanobacter sp. RED65]
          Length = 226

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 82/228 (35%), Positives = 117/228 (51%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      L +RIGY F + S  E ALTH S      ++ ERLEFLGD I+  +++  LF
Sbjct: 1   MNN-PLIKLSQRIGYTFNDISFFELALTHRS---KGGKNNERLEFLGDSIVNFVVAEALF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  AKEG+LS     LV   T +++AR+ DL  F+ + S   K       SI AD VE
Sbjct: 57  EKFPQAKEGKLSRLRAGLVRGTTLAELARDFDLGEFLLLGSGELKSGGFNRESILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G++     +  ++ +R   L+     +DAKT LQE         P+Y+V 
Sbjct: 117 AIIGAIYLDSGLDTVRERILTWYGKRLDDLQLDDVVKDAKTRLQEHLQKNQSRLPKYEVM 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
             +G  HD  F V   +  L     G+  S+R AEQ AA + L   G+
Sbjct: 177 EITGQAHDQNFKVSCWVETLPEVTIGLGSSRRLAEQSAAQKALNALGV 224


>gi|47168737|pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
           Aeolicus Complexed With Ds-Rna At 2.15 Angstrom
           Resolution
          Length = 220

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 115/223 (51%), Gaps = 14/223 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LEK++GY F ++SLLEKALTH S S   +E YE LEFLGD ++   I  LL  +  +
Sbjct: 4   LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG LS     L+S E  + +A++L+L  FIR+             +I  DV ++L AA
Sbjct: 62  KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFKALWAA 115

Query: 126 LYLDGGIEVAGTFVDKYWKQRALK-----SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +Y+D G +   T    Y   +         G+ ++D KT LQE    ++   PEY++   
Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GP H  +F V  +I       G   SK+ AEQ AA E++K  
Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIKLL 217


>gi|325661266|ref|ZP_08149893.1| ribonuclease III [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325472773|gb|EGC75984.1| ribonuclease III [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 259

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 112/224 (50%), Gaps = 8/224 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61
              + K+IGY F  + LL+KA+ HSS ++      Q+  ERLEFLGD +L L  S  LF 
Sbjct: 34  IKGIRKKIGYTFQKKELLQKAMMHSSYTNEKHMKKQDCNERLEFLGDAVLELTTSEALFF 93

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              S  EGEL+    S+V     + VA+EL L S++ +             SI +D VE+
Sbjct: 94  DNPSMPEGELTKTRASIVCEPALAFVAKELMLGSYLLLGKGEEATGGRQRDSITSDAVEA 153

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           LI A+YLDGG   A  F+ K+         K   D+KT LQE   AKF     Y +    
Sbjct: 154 LIGAIYLDGGFASAKEFIQKFILSDLENK-KLFYDSKTILQEMVQAKFTENVRYVLEKEE 212

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKR 222
           GPDH+  FT    I       G   +K+A+EQ AA +   +L++
Sbjct: 213 GPDHNKSFTTSAYIGEECYGTGSGRTKKASEQEAAYQTILMLRK 256


>gi|291613749|ref|YP_003523906.1| ribonuclease III [Sideroxydans lithotrophicus ES-1]
 gi|291583861|gb|ADE11519.1| ribonuclease III [Sideroxydans lithotrophicus ES-1]
          Length = 224

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 6/224 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++++ L KR+GY F    LL++ALTH S S       ERLEFLGD +L   I+  L++ +
Sbjct: 1   MKHAALCKRLGYQFLQPQLLQRALTHRSYS---AAHNERLEFLGDSVLNCAIAKYLYDTY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS   ++LV+ +T + +A++L+L   + +    RK       SI AD +E+L 
Sbjct: 58  PDLPEGDLSRLRSNLVNQQTLAILAQQLNLGEQLLLGEGERKSAGFRRPSILADALEALF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ LD G   A   V   +    +++      +DAKT LQE   ++    P+Y V    
Sbjct: 118 GAVLLDAGFMAAEKVVLGLYVPFIVQTDLKTLGKDAKTLLQEHLQSRKLALPQYHVAEIK 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224
           G  H   F V  EI+ L   +QG   S+R AEQ+AA    ++  
Sbjct: 178 GEAHAQTFVVTCEIAQLGLVSQGEGTSRRIAEQIAAERAYQQIK 221


>gi|229174515|ref|ZP_04302047.1| Ribonuclease 3 [Bacillus cereus MM3]
 gi|228609075|gb|EEK66365.1| Ribonuclease 3 [Bacillus cereus MM3]
          Length = 245

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F++  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|78485079|ref|YP_391004.1| ribonuclease III [Thiomicrospira crunogena XCL-2]
 gi|78363365|gb|ABB41330.1| RNAse III [Thiomicrospira crunogena XCL-2]
          Length = 233

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 120/230 (52%), Gaps = 10/230 (4%)

Query: 1   MSAL----RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56
           MS +    + + L K +GY + N   L++ALTH S+     ++ ERLEFLGD ++  +I+
Sbjct: 1   MSEMEKQAKLNRLSKSLGYQYKNIEFLQRALTHRSMG---AKNNERLEFLGDSLVNFMIA 57

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF+ F    EG+LS     LV  ET +++ +E  L+ ++ +     K       SI A
Sbjct: 58  DALFHQFHKISEGDLSRIRAFLVKGETLAKIGKEYQLSDYLMLGPGELKSGGYRRESIIA 117

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPE 174
           D VE++IA++Y DGG++    FV + ++ R       K  +D KT LQE+  +     PE
Sbjct: 118 DTVEAIIASVYEDGGLDACRAFVMRLYENRLKELDPSKIGKDPKTRLQEFLQSNREQLPE 177

Query: 175 YKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           Y V   +GP H   FTV   ++ L    +    ++R AEQVAA E L   
Sbjct: 178 YSVMTVNGPAHAQEFTVSCYVAKLNRKFEATATNRRKAEQVAAQEALDIL 227


>gi|83753758|pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
           Aeolicus Complexed With Double-Stranded Rna At 2.9-
           Angstrom Resolution
 gi|83753759|pdb|1YYO|B Chain B, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
           Aeolicus Complexed With Double-Stranded Rna At 2.9-
           Angstrom Resolution
          Length = 221

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 115/223 (51%), Gaps = 14/223 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LEK++GY F ++SLLEKALTH S S   +E YE LEFLGD ++   I  LL  +  +
Sbjct: 4   LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG LS     L+S E  + +A++L+L  FIR+             +I  DV ++L AA
Sbjct: 62  KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFKALWAA 115

Query: 126 LYLDGGIEVAGTFVDKYWKQRALK-----SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +Y+D G +   T    Y   +         G+ ++D KT LQE    ++   PEY++   
Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GP H  +F V  +I       G   SK+ AEQ AA E++K  
Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIKLL 217


>gi|229031479|ref|ZP_04187479.1| Ribonuclease 3 [Bacillus cereus AH1271]
 gi|228729768|gb|EEL80748.1| Ribonuclease 3 [Bacillus cereus AH1271]
          Length = 245

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F++  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|229019045|ref|ZP_04175885.1| Ribonuclease 3 [Bacillus cereus AH1273]
 gi|228742247|gb|EEL92407.1| Ribonuclease 3 [Bacillus cereus AH1273]
          Length = 245

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F++  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|163941587|ref|YP_001646471.1| ribonuclease III [Bacillus weihenstephanensis KBAB4]
 gi|229013032|ref|ZP_04170197.1| Ribonuclease 3 [Bacillus mycoides DSM 2048]
 gi|229134657|ref|ZP_04263466.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196]
 gi|229564349|sp|A9VT87|RNC_BACWK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|163863784|gb|ABY44843.1| Ribonuclease III [Bacillus weihenstephanensis KBAB4]
 gi|228648703|gb|EEL04729.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196]
 gi|228748286|gb|EEL98146.1| Ribonuclease 3 [Bacillus mycoides DSM 2048]
          Length = 245

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A E+   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    ++ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGYLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++  A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNEALGLGSGKSKK 227


>gi|229168588|ref|ZP_04296311.1| Ribonuclease 3 [Bacillus cereus AH621]
 gi|228614994|gb|EEK72096.1| Ribonuclease 3 [Bacillus cereus AH621]
          Length = 245

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A E+   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E+   ++ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLEIVWGYLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++  A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNEALGLGSGKSKK 227


>gi|50954668|ref|YP_061956.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|81391047|sp|Q6AFJ4|RNC_LEIXX RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|50951150|gb|AAT88851.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 237

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 102/229 (44%), Gaps = 10/229 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
                S L +++G    +  LLE ALTH S ++      + ERLEFLGD ILG  ++  L
Sbjct: 4   ENTDRSALLEKLGVDI-DPELLELALTHRSYAYENGGIPNNERLEFLGDSILGQAVTVKL 62

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F       EGEL+ R  SLVS+   ++VAR + L  ++ +     +       SI AD V
Sbjct: 63  FRENPGLDEGELAKRRASLVSSVALAEVARGIGLGEYLLLGRGENQSGGREKASILADTV 122

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVT 178
           E++I A+YLD G + A   V +          +F          + A A  G        
Sbjct: 123 EAVIGAVYLDAGGDEATALVLRLIGPLLADPDRFGAAMDPKTSLQEAAAHHGAGQPVYTV 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
             +GPDH   F   V++ GL  A G   SK+ AE  AA         WT
Sbjct: 183 INTGPDHSKTFHATVDVGGLVTASGEGTSKKQAEMAAALSA------WT 225


>gi|317125435|ref|YP_004099547.1| RNAse III [Intrasporangium calvum DSM 43043]
 gi|315589523|gb|ADU48820.1| RNAse III [Intrasporangium calvum DSM 43043]
          Length = 265

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
            + LE+ +G    +  LL ++LTH S ++      + ERLEFLGD +LGL+++  L+   
Sbjct: 24  LAHLEEVVGQEI-DEPLLLRSLTHRSFAYENGGVPNNERLEFLGDSVLGLVVTDTLYRSH 82

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+    ++V+    + VAR  DL  ++ +             SI AD +E+LI
Sbjct: 83  PDLPEGQLAKLRAAVVNMRALADVARTFDLGQYVMLGKGEEATGGRDKASILADSMEALI 142

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSG 182
             +YL   I++A  F+  ++     ++             +   A  G           G
Sbjct: 143 GTVYLSTDIDLAAQFIHHHFDAILEEAATLGAGLDWKTSLQQVAAAVGQGAPEYRVAEQG 202

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH+  F   V +      +G   SK+ AEQ AA E  +  
Sbjct: 203 PDHEKEFHARVVLGEEVLGEGHGRSKKEAEQKAAQEAWQSL 243


>gi|218885347|ref|YP_002434668.1| ribonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226735370|sp|B8DPB3|RNC_DESVM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|218756301|gb|ACL07200.1| Ribonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 230

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 114/223 (51%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNH 62
           +  L+  I YAF +  LL  A+THSS ++    + E  ERLEFLGD +L L +S  LF  
Sbjct: 2   FEKLQSDIHYAFNDAGLLATAMTHSSWANEQQEHVEHNERLEFLGDAVLELCVSEELFAR 61

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+L+     LVS    +++AR+L L  ++R+            +S+ +D +E++
Sbjct: 62  FPGAREGDLTRMRARLVSKPALAELARDLQLELYLRLGRGEESQGGRERSSLLSDALEAM 121

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A++LDGG E A   V      R       K  +D K+ LQE   + F   P Y +   
Sbjct: 122 LGAVFLDGGYERARAVVRHVLAARWPCDADGKRSKDYKSRLQELTQSLFRERPVYALMGS 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP+H+ RF V + +        +  S + AEQ+AA   LK  
Sbjct: 182 SGPEHEKRFEVRLTLPDGTVFTAIGPSVKRAEQMAAGLALKNL 224


>gi|218248059|ref|YP_002373430.1| Ribonuclease III [Cyanothece sp. PCC 8801]
 gi|257060612|ref|YP_003138500.1| ribonuclease III [Cyanothece sp. PCC 8802]
 gi|218168537|gb|ACK67274.1| Ribonuclease III [Cyanothece sp. PCC 8801]
 gi|256590778|gb|ACV01665.1| ribonuclease III [Cyanothece sp. PCC 8802]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 102/219 (46%), Gaps = 11/219 (5%)

Query: 16  AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            F N+ LL+ ALTH S  + +    E  ERLEFLGD IL  ++S  L+  +    E +L+
Sbjct: 6   QFKNQELLDCALTHRSYINEHFEVTEHNERLEFLGDAILQFVVSEELYRRYPELTEAQLT 65

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              + LV     +Q AR LDL   + +     KD      ++ +D  E++I A +LD GI
Sbjct: 66  RLRSKLVDEPQLAQFARTLDLGQLMYLGQGAIKDGGRENPALLSDAFEAIIGAYFLDAGI 125

Query: 133 EVAGTFVDKYWK--------QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           E    FV   +K          +        D K  LQ+WA  ++   PEY +  +SGPD
Sbjct: 126 EAVQYFVRSLFKEAIDNLVLPESRTVSPSIIDVKNRLQQWALEQYKQVPEYFLIEQSGPD 185

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H   F   V I+G     G    K+ A + AA + L + 
Sbjct: 186 HAKEFVFGVRINGQVLGTGKGRRKQEATKAAAQDALDKL 224


>gi|152976215|ref|YP_001375732.1| ribonuclease III [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189043291|sp|A7GRH9|RNC_BACCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|152024967|gb|ABS22737.1| Ribonuclease III [Bacillus cytotoxicus NVH 391-98]
          Length = 245

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++++G  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FRAFQQKLGITFTNEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G++    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLDTVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNSVALGLGSGKSKK 227


>gi|229061452|ref|ZP_04198797.1| Ribonuclease 3 [Bacillus cereus AH603]
 gi|228717875|gb|EEL69523.1| Ribonuclease 3 [Bacillus cereus AH603]
          Length = 245

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A E+   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    ++ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGYLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++  A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNEALGLGSGKSKK 227


>gi|153871985|ref|ZP_02001008.1| Ribonuclease III [Beggiatoa sp. PS]
 gi|152071548|gb|EDN68991.1| Ribonuclease III [Beggiatoa sp. PS]
          Length = 225

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 117/228 (51%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+   Y+ L + +GY F     L  ALTH S+        ERLEFLGD +L  + + +L+
Sbjct: 1   MNQ-DYNHLCQALGYHFKQPEHLTTALTHRSVG---TPHNERLEFLGDALLNCITAKMLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F SA+EG+L+    +LV  +T  ++A+ L+L  ++R+     K   +  TS  AD VE
Sbjct: 57  ERFPSAREGQLTRLRANLVKRDTLVKIAQRLELGKYLRLGDGEIKSGGAKRTSTLADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++I A+YLD  ++     +   W++  +  S +  +D KT LQE+   +    P Y+V  
Sbjct: 117 AIIGAIYLDSDMKTCQAVILPIWQESLSKLSLEKIKDPKTRLQEYLQERQQTLPIYRVLS 176

Query: 180 RSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            SG  H+  F V   I     P  G   S+R AEQ AAA+VL    + 
Sbjct: 177 TSGTPHEQHFEVECRIPYLKEPTYGSGHSRRRAEQSAAAKVLSILNVI 224


>gi|126739723|ref|ZP_01755415.1| ribonuclease III [Roseobacter sp. SK209-2-6]
 gi|126719369|gb|EBA16079.1| ribonuclease III [Roseobacter sp. SK209-2-6]
          Length = 228

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 82/210 (39%), Positives = 118/210 (56%), Gaps = 1/210 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +      E+RIGY F    LL +ALTH S+S   ++  +RLEFLGDR+LGL+++T +
Sbjct: 1   MKLSKDMRAFEERIGYRFKRVDLLVRALTHPSVSSPNRKDNQRLEFLGDRVLGLVMATAM 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                 A EG+L+ RFN+LV  ETC+ VARE+DL + +++             ++  D +
Sbjct: 61  LESDKEASEGQLAPRFNALVRKETCADVAREIDLGAVLKLGRSEMMSGGRRKLALLGDGM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+Y D G EVA   + + W QR  +  +  RD KT LQE+  A+    P Y    
Sbjct: 121 EAVIAAVYKDAGFEVAQDMILRLWGQRIFQVEEDARDPKTALQEYVQARRQPPPAYVQVS 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           R GPDH+P FT+ V +      Q    SKR
Sbjct: 181 RQGPDHEPIFTIAVRLQDGTEEQASAGSKR 210


>gi|88606764|ref|YP_505691.1| ribonuclease III [Anaplasma phagocytophilum HZ]
 gi|123494405|sp|Q2GIW0|RNC_ANAPZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|88597827|gb|ABD43297.1| ribonuclease III [Anaplasma phagocytophilum HZ]
          Length = 236

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 77/217 (35%), Positives = 117/217 (53%), Gaps = 2/217 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             + K  GY F +  LL+ A+TH SI+     SYERLEFLGD +LGL++S +L+  F   
Sbjct: 14  EKVFKISGYRFQDHELLKTAVTHPSIAAERYASYERLEFLGDAVLGLVVSEMLYTLFPDD 73

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+ +  +LV      ++A+ L+L + + +S            S   + +E+LI A+
Sbjct: 74  SEGLLTKKRIALVRGSKVVEIAQSLNLGNILLMSKGELTSGGISNNSNLENALEALIGAI 133

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           Y+DGG+E    F+ ++WK  A        +DAKT LQEWA       P Y++  +SG +H
Sbjct: 134 YVDGGLESVRHFILQHWKPLATNLADTPLQDAKTALQEWAQGHNFAIPSYRLINKSGLEH 193

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            P FTV V ++G        C K+ AE  AA  +L++
Sbjct: 194 APVFTVEVTVNGQRV-HATGCKKKYAEIAAAKLMLEK 229


>gi|262375526|ref|ZP_06068759.1| ribonuclease III [Acinetobacter lwoffii SH145]
 gi|262309780|gb|EEY90910.1| ribonuclease III [Acinetobacter lwoffii SH145]
          Length = 232

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           S L    L KRIGY F    LL+ ALTH S+SH +  +YERLEFLGD +LG++I+  LFN
Sbjct: 6   SKLNDERLAKRIGYQFKQADLLKLALTHRSVSHKH--NYERLEFLGDSLLGMIIANYLFN 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + S  EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VE+
Sbjct: 64  AYPSENEGRLTRMRATLVRQEALGKIANDLKLSQNLILSTGELKSGGHHRESILADTVEA 123

Query: 122 LIAALYLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +I A+Y+D G                   ++     +D K+ LQE+  A+    P Y+V 
Sbjct: 124 IIGAIYVDCGDLTVLEPIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 183

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G   +  F V  +I+GL   QG   S+R AEQ  AA++LK  
Sbjct: 184 DIQGDAPNQHFKVECQIAGLPTMQGEGASRRFAEQAVAADILKLL 228


>gi|116492609|ref|YP_804344.1| ribonuclease III [Pediococcus pentosaceus ATCC 25745]
 gi|122265927|sp|Q03FX0|RNC_PEDPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116102759|gb|ABJ67902.1| RNAse III [Pediococcus pentosaceus ATCC 25745]
          Length = 232

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M       L +     F N +LL++A T +S  + +     + YER+EFLGD +L L++S
Sbjct: 1   MIKALEDDLSQTFDIHFNNHALLDEAFTQASYVNEHPHQELKFYERIEFLGDAVLQLIVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    +G+L+    ++V   + S  A+E     +IR+     K      +S+  
Sbjct: 61  EYLFKRYPEMPQGKLTRLRAAMVCEASFSDFAKECHFDQYIRLGKGEEKSGARQRSSLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ ES I ALYLD G      FV      +          D K+ELQE       V  +Y
Sbjct: 121 DIFESFIGALYLDQGRAAVERFVRIVIFPKLDEGKFDHIIDHKSELQELLQKNGDVEIDY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++    GP++D  FTV V       A G   SK+ AEQ AA + L+  
Sbjct: 181 ELVSEEGPENDLIFTVSVTADHKKLATGTGHSKKVAEQNAANQALQLL 228


>gi|294139709|ref|YP_003555687.1| ribonuclease III [Shewanella violacea DSS12]
 gi|293326178|dbj|BAJ00909.1| ribonuclease III [Shewanella violacea DSS12]
          Length = 225

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     L + +GY F  ++ L++ALTH S S    +  ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNIPRLCRTLGYQFTQQAHLDQALTHRSASS---KHNERLEFLGDSILSIIISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F    EG+LS    +LV  +  +++  E  L  ++++     K       SI AD V
Sbjct: 58  YHQFPKVTEGDLSRMRATLVCGKMLAEIGFEFKLGDYLKLGPGELKSGGFRRESIIADGV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E++I A+YLD  +E     V  +++ R A+     ++D KT LQE         P YKVT
Sbjct: 118 EAIIGAIYLDADLETCRARVLSWYESRLAIIEPINQKDPKTLLQELLQGFKKPLPVYKVT 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
              G  H   FTV   +  L     G+  S+R AEQ+AAA+VL+   
Sbjct: 178 DIKGEAHAQTFTVECSVEELKKPLVGVASSRRKAEQIAAAQVLELIK 224


>gi|157737847|ref|YP_001490531.1| ribonuclease III [Arcobacter butzleri RM4018]
 gi|315637636|ref|ZP_07892842.1| ribonuclease III [Arcobacter butzleri JV22]
 gi|189043289|sp|A8EV88|RNC_ARCB4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157699701|gb|ABV67861.1| ribonuclease III [Arcobacter butzleri RM4018]
 gi|315478090|gb|EFU68817.1| ribonuclease III [Arcobacter butzleri JV22]
          Length = 224

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 4/208 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS LEK + Y F N++L+ +ALTH S    Y  + ERLEFLGD +L L++   L+  F 
Sbjct: 3   DYSKLEKCLDYQFKNKNLIIEALTHKSFKKPY--NNERLEFLGDAVLNLIVGEYLYLKFP 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            + EGELS    SLV+    +++A E+ L  +I +S+   ++      SI +D  E+++ 
Sbjct: 61  KSNEGELSKIRASLVNETGFTRLANEIKLGEYIFISTAEERNKGRTKASILSDAFEAIMG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL+ G+      + +  ++   K        D KT LQE   A+F   PEYK+    G
Sbjct: 121 AIYLESGLNTLKPIILRILEESYDKINLDVLFSDYKTALQEITQARFASIPEYKIEGSYG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRA 210
           PDH   F V + I G    +    SK+ 
Sbjct: 181 PDHKKEFEVSIWIDGKNYGKASGKSKKL 208


>gi|182679393|ref|YP_001833539.1| ribonuclease III [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635276|gb|ACB96050.1| Ribonuclease III [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 235

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 99/224 (44%), Positives = 133/224 (59%), Gaps = 2/224 (0%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFN 61
                 LE RIG+ F    LL  ALTH S+   + +E+Y+RLEFLGDR+LGL+I+ +L+ 
Sbjct: 5   KQDLEPLETRIGHRFVEADLLTTALTHVSVTVGARRETYQRLEFLGDRVLGLVIAEMLYA 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EGELS R   LV  E+C++VA E  +  F+R+     + + +   +I  DV ES
Sbjct: 65  TFPEAEEGELSRRLADLVRKESCAEVALEWGVGPFVRLGES-ERQIGTTKKAILGDVCES 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +I A++LD G  VA   + K +  R     +  RDAKT LQEWA ++   TP Y+   R 
Sbjct: 124 IIGAVFLDAGYTVAQQVIVKAFDARMRSPRRPLRDAKTVLQEWAQSRGHPTPLYREICRC 183

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           GPDH P FT+ V I G A AQ    SKR AEQ AAA  ++REGI
Sbjct: 184 GPDHAPEFTISVCIPGYADAQAKGPSKRLAEQAAAAHFIEREGI 227


>gi|19703497|ref|NP_603059.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|22654053|sp|Q8RGX3|RNC_FUSNN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|19713585|gb|AAL94358.1| Ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 234

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 115/231 (49%), Gaps = 9/231 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M       LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++
Sbjct: 1   MK--NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQTNERLELLGDAVLDLIVA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  + +A EG ++     +VS    ++++R++ +  F+ +S            SI A
Sbjct: 59  EYLYKSYKNASEGPIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILA 118

Query: 117 DVVESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           D  E+++ A+Y+D  ++ A  F           ++  +   D K+ LQE+   +F   P 
Sbjct: 119 DSFEAILGAVYIDSNLDEARVFALSHIKQYIDHIEENEDILDFKSILQEYVQKEFKTVPT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           Y++    GPDH   F + V +      + +  +K+ AEQ++A  +  + G+
Sbjct: 179 YELVAERGPDHMKEFEIQVIVGNYKE-KAVARNKKKAEQLSAKALCIKLGV 228


>gi|313892793|ref|ZP_07826374.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442724|gb|EFR61135.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
          Length = 246

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 112/224 (50%), Gaps = 6/224 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
              L  R+    ++ S+++ A TH+S ++ ++       +RLEFLGD +L L+I   LF 
Sbjct: 19  LHELVARLDIPVSDISIIDCAFTHTSYANEHKSKHINHNQRLEFLGDAVLDLIIGEYLFK 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++    EG L+    + V  ++ + V+R L L  ++ +    R    +   SI AD  ES
Sbjct: 79  NYPDMAEGNLTKIKAATVCEDSLASVSRSLQLGQYLLLGHGERASGGNDRNSILADTFES 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+Y+    + A TFV K+      +   GK   D KT LQE+          Y++  
Sbjct: 139 LIGAIYISTDYQTAMTFVLKHLTIYIKQALEGKRGNDYKTLLQEYVQRDGDKHIVYRLLS 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            SGPDH   F +VVEI+G+    G   SK+ AEQ AA   L++ 
Sbjct: 199 ESGPDHAKTFHIVVEINGVTYEAGSGKSKKIAEQHAAQLTLEKL 242


>gi|304440214|ref|ZP_07400104.1| ribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371263|gb|EFM24879.1| ribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 226

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 10/227 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M  L+Y      I Y F N  L   ALTHSS S+  +E    S ERLEFLGD +L L++ 
Sbjct: 1   MKNLKYLN----ISYEFKNEELFRTALTHSSYSNENKEKCKYSNERLEFLGDAVLDLVVG 56

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
              F  F    EG+LS+    +V   + +++A++++L   I +     K+      SI A
Sbjct: 57  EYFFKQFKVR-EGQLSMMRAKVVKESSLAKIAKKINLGEMILLGKGEEKNNGREKLSILA 115

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LI A+YLD   +VA  F+     +   K+ +       + +     +        
Sbjct: 116 DSLEALIGAIYLDSSFDVAKEFILDIMSEELEKAHESSYLVDYKSRLQEVCQMAHLNIEY 175

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V  ++ GP +   F   V + G    +G   S + +EQ+AA + L +
Sbjct: 176 VLEKTNGPLNSRVFYSKVIVDGKVFGRGEGNSIKKSEQMAAKDALSK 222


>gi|171057289|ref|YP_001789638.1| ribonuclease III [Leptothrix cholodnii SP-6]
 gi|170774734|gb|ACB32873.1| Ribonuclease III [Leptothrix cholodnii SP-6]
          Length = 228

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS     TL+ R+G+ F ++SLL +A++H S      +  ERLEFLGD +L + +S LLF
Sbjct: 1   MSTYPLDTLQARLGHVFRDQSLLLRAVSHRS---HGADHNERLEFLGDAVLNMTVSDLLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + FD + EG+L+     LV  +   ++A  L L + +R+S    +   +   SI AD +E
Sbjct: 58  DQFDDSPEGDLTRVRAHLVRQDMLHRLALSLQLPAVLRLSDGEARAGGAQRPSILADAME 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+Y D G E A   V + ++       +  + +DAKT+LQEW  A+    PEY++ 
Sbjct: 118 AVIGAVYRDAGYEAAQALVRRLFEPLVSETVTQAWAKDAKTQLQEWLQARRQSVPEYRIE 177

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
              G  HD  F VV  ++G    A+G   S+RAAEQ AA  VL++ 
Sbjct: 178 TTRGRAHDQTFVVVCSVAGPGIEARGEGRSRRAAEQEAARLVLEQL 223


>gi|292670166|ref|ZP_06603592.1| ribonuclease III [Selenomonas noxia ATCC 43541]
 gi|292648118|gb|EFF66090.1| ribonuclease III [Selenomonas noxia ATCC 43541]
          Length = 238

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/218 (33%), Positives = 112/218 (51%), Gaps = 8/218 (3%)

Query: 1   MSALRYSTLEKR---IGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLL 54
           M   R + L +    +G +F + +LL++ALTH S ++  ++     ERLEFLGD +L L 
Sbjct: 5   MKDERLAQLMRLSAEMGVSFNDFALLDEALTHPSYTNEAKDTIPHNERLEFLGDAVLELA 64

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
            ST L+  F    EGEL+    SLV + T +++AR LDL S +R+      +  +   + 
Sbjct: 65  SSTYLYARFPDCSEGELTKMRASLVQSNTLARLARALDLGSCLRLGRGEFHNGGADRQNN 124

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVT 172
             +  E++I A+YLD G E A  +V +   + A    K +   D KT LQE    +    
Sbjct: 125 LENAFEAVIGAVYLDAGWETAKEYVARQLSREADHIKKAQVVHDYKTTLQEHIQQRRNKG 184

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
             Y++   SGPDHD RFT+ V +      +G   SK+ 
Sbjct: 185 IVYELIDESGPDHDKRFTMRVLVDNQPIGEGAGRSKKE 222


>gi|322803055|gb|EFZ23143.1| hypothetical protein SINV_00854 [Solenopsis invicta]
          Length = 1447

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  S   ++    S +RLEFLGD +L L++S  L+  
Sbjct: 990  KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1049

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T + V  +L +  +    +   +      T  +AD++E+ 
Sbjct: 1050 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK----TKDRADLLEAF 1105

Query: 123  IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA------HAKFGVTPE 174
            + ALY+D G++    F D  +    +     +   D K++LQ+               P 
Sbjct: 1106 LGALYVDKGLKYCHIFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1165

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV    GP +   +TV V   G   A     S + AE  +A E L++
Sbjct: 1166 YKVIECKGPTNTRVYTVAVYFQGKRLATASGHSIQEAEMNSAKEALEK 1213



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE+ +GY F NR LL+ ALTH S   ++  +
Sbjct: 759 LDNLERTLGYEFKNRYLLQLALTHPSYRENFGTN 792



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 58/122 (47%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             ERLEFLGD ++  L S  LF+ F   +EG L+    ++V  +  + +A++L+L  ++ 
Sbjct: 847 HNERLEFLGDAVVEFLTSIHLFHMFPELEEGGLATYRAAIVQNQHLAVLAKKLNLEEYML 906

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158
            +          +    A+  E+L+ +L+LDGGIEVA     +   +      K   +  
Sbjct: 907 YAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKGEEDLAKVWVNYP 966

Query: 159 TE 160
             
Sbjct: 967 RH 968


>gi|238019508|ref|ZP_04599934.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
 gi|237864207|gb|EEP65497.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
          Length = 245

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 112/224 (50%), Gaps = 6/224 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
              L  R+    ++ S+L+ A TH+S ++ ++       +RLEFLGD +L L+I   LF 
Sbjct: 19  LHGLVARLDIPVSDISILDCAFTHTSYANEHKSKHINHNQRLEFLGDAVLDLIIGEYLFK 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG+L+    + V  ++ + V+R L L  ++ +    R    +   SI AD  ES
Sbjct: 79  TYPDMAEGDLTKIKAATVCEDSLASVSRSLQLGQYLLLGHGERASGGNNRNSILADTFES 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+Y+    + A  FV K+      +   GK  +D KT LQE+          Y++  
Sbjct: 139 LIGAIYISTDYQTAMNFVLKHLITYIKQALEGKRGKDYKTLLQEYVQRDGDKHTVYRLLS 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            SGPDH   F +VVEI+G+    G   SK+ AEQ AA   L++ 
Sbjct: 199 ESGPDHAKTFHMVVEINGVTYEAGSGKSKKIAEQHAAQLTLEKL 242


>gi|83951643|ref|ZP_00960375.1| ribonuclease III [Roseovarius nubinhibens ISM]
 gi|83836649|gb|EAP75946.1| ribonuclease III [Roseovarius nubinhibens ISM]
          Length = 227

 Score =  130 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 92/221 (41%), Positives = 125/221 (56%), Gaps = 1/221 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +        R+G+ F   +LL +ALTHSS+S   ++  +RLEFLGDR+LGL++S  L
Sbjct: 1   MKLSAEIKAFAARLGHEFQTPALLVQALTHSSMSTPNRDDNQRLEFLGDRVLGLVMSEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
             H   A EG L+ RFN+LV  ETC+ VAR++DL + +++             ++  D +
Sbjct: 61  LEHDRKAAEGTLAPRFNALVRKETCADVARQIDLGAVLKLGRSEMLSGGRRKQALLGDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+YLD G E A T V   W  R  +     RDAKT LQEWA A+    P Y+   
Sbjct: 121 EAVIAAVYLDAGFETARTVVLALWGDRITRVEADARDAKTALQEWAQARGLAPPRYEEVA 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           RSGPDH P FT+V  +     A     SKR AEQ AA  +L
Sbjct: 181 RSGPDHAPEFTIVARLETGEEAASKAGSKRQAEQAAAKALL 221


>gi|320528410|ref|ZP_08029572.1| ribonuclease III [Solobacterium moorei F0204]
 gi|320131324|gb|EFW23892.1| ribonuclease III [Solobacterium moorei F0204]
          Length = 226

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 7/222 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63
              LE R      N  ++++A  HSS +H    +   ERLEF+GD +L L  S  ++   
Sbjct: 6   IEWLESR-HIKVNNAKMIQQAFIHSSYAHEHKNKNDNERLEFMGDAVLQLWSSNAIYPLN 64

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG ++     LV  +  +   R+L L  ++ + S   K       +I AD+ E+ +
Sbjct: 65  L--SEGHMTRLRAQLVCEKALAIYGRQLHLNDYLLLGSGEEKTGGRNKDAIIADMFEAFL 122

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            AL+LD G++     + +    R           D KT+LQE+  +    T +Y++   +
Sbjct: 123 GALFLDQGMDAVDNILSEVITPRLAHPEDVGVIHDYKTKLQEYVQSDSRQTVKYELVSET 182

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GP + P F + V + GL    G   SK+ AEQ AA    ++ 
Sbjct: 183 GPSNAPEFVMNVLVDGLVLGTGSGQSKKQAEQNAARNAFEKM 224


>gi|223932807|ref|ZP_03624804.1| Ribonuclease III [Streptococcus suis 89/1591]
 gi|302023944|ref|ZP_07249155.1| ribonuclease III [Streptococcus suis 05HAS68]
 gi|330832996|ref|YP_004401821.1| ribonuclease III [Streptococcus suis ST3]
 gi|223898516|gb|EEF64880.1| Ribonuclease III [Streptococcus suis 89/1591]
 gi|329307219|gb|AEB81635.1| ribonuclease III [Streptococcus suis ST3]
          Length = 228

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 6/229 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L ++ L    G  F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MKDL-HAKLLADFGIDFSDLNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLMIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EGE+S   ++ V  E+ +  +R      F+R+     K       +I  
Sbjct: 60  KYLYQKYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD G +    F+ K    R    + +   D KT LQE       +   Y
Sbjct: 120 DAFEAFLGALLLDKGEKTVEEFIHKVMIPRLEKGNFERVTDYKTALQEILQVNGEIAISY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +V   SGP HD  F V V        +G   SK+ AEQ AA   ++  G
Sbjct: 180 QVIAESGPAHDKTFEVEVSADRRVIGRGRGRSKKLAEQAAAKNAVEARG 228


>gi|218291547|ref|ZP_03495421.1| Ribonuclease III [Alicyclobacillus acidocaldarius LAA1]
 gi|258511329|ref|YP_003184763.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|218238642|gb|EED05867.1| Ribonuclease III [Alicyclobacillus acidocaldarius LAA1]
 gi|257478055|gb|ACV58374.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 241

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/213 (29%), Positives = 100/213 (46%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M + ++  L+  +   F + +LL++A TH+S  + ++    E  ERLEFLGD +L L++S
Sbjct: 1   MQS-KWLELQGLLNLQFNDVNLLKQAFTHASYRNEHRKLHVEDNERLEFLGDAVLELVVS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EGEL+    ++V   +  + A+ L    +IR+     +       ++ A
Sbjct: 60  DFLYRTYPKMPEGELTRMRAAIVCEASLVRFAKRLSFDQYIRLGRGEERSGGRSRPALLA 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           DV E+ + ALYLD G+E    FV  +             D KT LQE    +      Y 
Sbjct: 120 DVFEAFLGALYLDQGLEAVRQFVHTHMVPYLPDVSAG-LDYKTALQELVQQRHQTPVRYV 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +    GP H   F V VE+ G     G+  SK+
Sbjct: 179 IVEERGPAHAREFVVQVELGGEVRGVGIGRSKK 211


>gi|315648181|ref|ZP_07901282.1| ribonuclease III [Paenibacillus vortex V453]
 gi|315276827|gb|EFU40170.1| ribonuclease III [Paenibacillus vortex V453]
          Length = 232

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 5/210 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
               L+ ++   F N  LL++A TH+S  + ++    +  ERLEFLGD +L L +S  L+
Sbjct: 4   DLKQLQHKLQIQFRNAMLLKQAFTHASYVNEHRFSQSQDNERLEFLGDAVLELTVSEFLY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N F    EGEL+    ++V   +  Q A  LD   ++ +             ++ ADV E
Sbjct: 64  NLFPDRPEGELTKLRAAIVCEPSLVQFAVGLDFGRYVLLGKGEEMTGGRTRPALLADVFE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           S + ALYLD G+E    F+  +       +      D KTELQE          EY++  
Sbjct: 124 SFVGALYLDQGLEAVRRFLSDHVFPSVTVNGRPQMSDYKTELQELTQHHGMGALEYRIVE 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             GP H+  F   V +      +G   SK+
Sbjct: 184 ERGPAHEREFVSEVYMGSECLGRGSGRSKK 213


>gi|195402669|ref|XP_002059927.1| GJ15113 [Drosophila virilis]
 gi|194140793|gb|EDW57264.1| GJ15113 [Drosophila virilis]
          Length = 1306

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 81/224 (36%), Gaps = 6/224 (2%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ H
Sbjct: 955  DLTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1014

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L +  +   ++            +    + +L
Sbjct: 1015 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLKTKDRADLLEAFLGAL 1074

Query: 123  IA----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
                                +  +   +     K +                  P YKV 
Sbjct: 1075 YVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVV 1134

Query: 179  FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1135 EASGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALEN 1178



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE+ IGY F NR LL+ ALTH S   +Y  +
Sbjct: 724 LDLLEESIGYKFKNRYLLQLALTHPSYKENYGTN 757



 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%)

Query: 36  YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95
                ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A++L L  
Sbjct: 809 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 868

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           F+  +          +    A+  E+L+ AL LDGGI+
Sbjct: 869 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 906


>gi|53804477|ref|YP_113920.1| ribonuclease III [Methylococcus capsulatus str. Bath]
 gi|81682093|sp|Q608M7|RNC_METCA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|53758238|gb|AAU92529.1| ribonuclease III [Methylococcus capsulatus str. Bath]
          Length = 230

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 110/220 (50%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L +++G  F +  LL  ALTH S       + ERLEFLGD +LG +++  L+  F SA
Sbjct: 6   EHLARKLGIPFRDPGLLRNALTHRSAE---GVNNERLEFLGDSVLGFVVTEYLYQRFPSA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG LS    +LV+  + +++AREL+L  ++ + S   K       SI +D +E+++ A+
Sbjct: 63  DEGVLSRLRATLVNETSLARIARELELGEYLILGSGELKSGGYRRDSILSDALEAILGAV 122

Query: 127 YLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D GI+               AL    +++D KT LQE    +    P Y +  +SG  
Sbjct: 123 LRDQGIDACRALILTLFERPLSALSLDDWKKDPKTRLQELMQGRGLPLPVYTLIDQSGLP 182

Query: 185 HDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           HD  F V  E+   + P  G   S++ AEQ AA  +L R 
Sbjct: 183 HDQHFRVRCEVPLAVEPCVGEGSSRKKAEQQAAENMLSRL 222


>gi|331002416|ref|ZP_08325934.1| ribonuclease III [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330410232|gb|EGG89666.1| ribonuclease III [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 232

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 67/215 (31%), Positives = 102/215 (47%), Gaps = 10/215 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIS 56
           M+      L++ +GY + N+ LL++ALTHSS ++ +      S ERLEFLGD +L L+ S
Sbjct: 1   MNN-NLKELQELLGYEYKNKELLKQALTHSSYANEHQLGKNGSNERLEFLGDAVLELVSS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
              +  +    EGEL+    S V        A+ + L+ F+++             SI +
Sbjct: 60  EFFYGVYPEKPEGELTKIRASFVCEPALVDCAKNIKLSEFLKLGKGEEHTGGRMRPSIIS 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E++I ++YLDGG   A   + K+          F  D+KT LQE   ++     EY 
Sbjct: 120 DTFEAIIGSIYLDGGFASAKEVILKFILNEYENKV-FFYDSKTILQEVIQSQDSKPVEYT 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAP--AQGMDCSKR 209
           +    GPDH  +F V V I G       G   SK+
Sbjct: 179 LLSEEGPDHLKKFVVAVNIDGK--RAGVGEGVSKK 211


>gi|114566311|ref|YP_753465.1| ribonuclease III [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318607|sp|Q0AYW0|RNC_SYNWW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|114337246|gb|ABI68094.1| RNAse III [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 233

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            L+  ALTH S +       + +RLEFLGD +L L+++  L+NH+    EGEL+     +
Sbjct: 23  ELITMALTHPSYAQEKNTVANNQRLEFLGDAVLNLVVAEYLYNHYGRKAEGELTKIRAKV 82

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           V  +  +  AR ++L  ++ +             SI AD VE++I A+YLD G+E    F
Sbjct: 83  VCEDALAIFARNINLGQYLLLGRGEEMSGGRKRKSILADAVEAVIGAIYLDQGLETVQRF 142

Query: 139 VDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
           + +  ++   ++      D K++LQE   A+      Y +   SGP H   F   V    
Sbjct: 143 IIRQLEELISETASGDYYDYKSKLQELVQARDKENVSYAIIEESGPAHAKVFVAGVYYRE 202

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221
              A G   SK+ AEQ AA +VL+
Sbjct: 203 QLLATGEGKSKKEAEQKAAQKVLQ 226


>gi|269127639|ref|YP_003301009.1| ribonuclease III [Thermomonospora curvata DSM 43183]
 gi|268312597|gb|ACY98971.1| ribonuclease III [Thermomonospora curvata DSM 43183]
          Length = 268

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 107/223 (47%), Gaps = 7/223 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + LE+ +G + + R LLE+ALTH S ++      + ERLEFLGD +LGL+++  LF +  
Sbjct: 27  AELERALGVSIS-RELLERALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLFRNHP 85

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    ++V+    + VAR L   ++IR+            TSI AD +E+LI 
Sbjct: 86  DLPEGQLAKLRAAVVNMRALAGVARSLGAGAYIRLGRGEEGTGGRDKTSILADTLEALIG 145

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A+YL+ G++ A   V + +     KS             +   A+  +         SGP
Sbjct: 146 AVYLEHGLDEAAKLVHRLFDSLIDKSASLGAGLDWKTSLQELTAEEELGVPEYHVAESGP 205

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKRE 223
           DH   F   V + G+    G   SK+ AEQ AA      +K  
Sbjct: 206 DHQKTFRATVRVGGVTYGSGEGRSKKEAEQRAAEATWHAIKEM 248


>gi|320536816|ref|ZP_08036812.1| ribonuclease III [Treponema phagedenis F0421]
 gi|320146325|gb|EFW37945.1| ribonuclease III [Treponema phagedenis F0421]
          Length = 243

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 77/219 (35%), Positives = 108/219 (49%), Gaps = 5/219 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62
               +K+ G+ F N  LL  A  H S SH ++   ++ ERLEFLGD +LGL+ ++ L+N 
Sbjct: 16  LLNFQKKAGFKFKNLKLLNLAFHHRSFSHIHEASFQNNERLEFLGDSVLGLVTASCLYNL 75

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                EGEL+     LVS ET S +A  LD+  +I +             +I AD +E++
Sbjct: 76  LSDCSEGELAKTKAVLVSEETLSDIALSLDVDKYIMLGRGEEMSGGRRKKAILADAMEAI 135

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I ALYLD G +VA  FV +    +    ++     D K+ LQE +  KF + P Y V   
Sbjct: 136 IGALYLDSGFKVAEKFVLRIITPKIPLVRNENLHMDYKSALQELSQKKFQILPLYTVVKA 195

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            GPDHD  F V V+I           SK+ A Q  A   
Sbjct: 196 QGPDHDRTFWVEVQIHTKKYGPATGKSKKEAAQAVAELA 234


>gi|89895402|ref|YP_518889.1| hypothetical protein DSY2656 [Desulfitobacterium hafniense Y51]
 gi|89334850|dbj|BAE84445.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 262

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 4/208 (1%)

Query: 21  SLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            L   ALTH S          E+ +RLEFLGD IL  +++  L+  +    EGEL+    
Sbjct: 50  RLFTTALTHPSYLFENPQSGLENNQRLEFLGDAILDFVVAEYLYLSYPERPEGELTKMRA 109

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           ++V+  T ++ A+++ L   + +    +        SI AD  E+++ A+YL  G + A 
Sbjct: 110 AVVNESTLARTAKKIRLGEELLLGKGEQVSGGRERPSILADAWEAIVGAVYLQYGFQEAR 169

Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
             V    K+   +  +        + +    +      Y++    GPDH+ RFT  V + 
Sbjct: 170 RVVLTLLKEEIAEVAQGNYGDYKTMLQEKAQREETEVTYRILAEEGPDHNKRFTAGVFLQ 229

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           G    +G+  +K+ AEQ AA +VL   G
Sbjct: 230 GNLRGKGIGRTKKEAEQRAAQQVLDEFG 257


>gi|219669830|ref|YP_002460265.1| ribonuclease III [Desulfitobacterium hafniense DCB-2]
 gi|219540090|gb|ACL21829.1| Ribonuclease III [Desulfitobacterium hafniense DCB-2]
          Length = 262

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 4/208 (1%)

Query: 21  SLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            L   ALTH S          E+ +RLEFLGD IL  +++  L+  +    EGEL+    
Sbjct: 50  RLFTTALTHPSYLFENPQSGLENNQRLEFLGDAILDFVVAEYLYLSYPERPEGELTKMRA 109

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           ++V+  T ++ A+++ L   + +    +        SI AD  E+++ A+YL  G + A 
Sbjct: 110 AVVNESTLARTAKKIRLGEELLLGKGEQVSGGRERPSILADAWEAIVGAVYLQYGFQEAR 169

Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
             V    K+   +  +        + +    +      Y++    GPDH+ RFT  V + 
Sbjct: 170 RVVLTLLKEEIAEVAQGNYGDYKTMLQEKAQREETEVTYRILAEEGPDHNKRFTAGVFLQ 229

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           G    +G+  +K+ AEQ AA +VL   G
Sbjct: 230 GNLRGKGIGRTKKEAEQRAAQQVLDEFG 257


>gi|149173983|ref|ZP_01852611.1| ribonuclease III [Planctomyces maris DSM 8797]
 gi|148846963|gb|EDL61298.1| ribonuclease III [Planctomyces maris DSM 8797]
          Length = 247

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 78/218 (35%), Positives = 114/218 (52%), Gaps = 3/218 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
               ++ +GY F +  LL+  LTH+S + +  +S ERLEFLGD ILG ++   LF+ F +
Sbjct: 14  LEECQQNLGYRFVDCELLKSCLTHTSAAKTRMDSNERLEFLGDAILGSIVCEKLFDQFPN 73

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EGEL+   +++VS  TC+++ARE  L  FI V   L     +   S+ A + E+LIA 
Sbjct: 74  APEGELTRIKSAVVSRNTCTRLAREKGLDRFIFVGKGLAMTE-NLPESLLAGMFEALIAG 132

Query: 126 LYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGGI     F+D     +           + K+ LQ+++  KF  TP Y+V    GP
Sbjct: 133 IYLDGGIAPVHQFLDPLIERENSKASRSVHGYNYKSLLQQYSQKKFSQTPIYEVLDEKGP 192

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           DH   F V   I           +K+ AEQ AA   L+
Sbjct: 193 DHSKFFKVTAIIGEHKYEPAWGSTKKEAEQRAAYNALR 230


>gi|24217145|ref|NP_714628.1| ribonuclease III [Leptospira interrogans serovar Lai str. 56601]
 gi|45655649|ref|YP_003458.1| dsRNase III [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|59798574|sp|Q75FW5|RNC_LEPIC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|59798588|sp|Q8EXX3|RNC_LEPIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|24202183|gb|AAN51643.1| ribonuclease 3 [Leptospira interrogans serovar Lai str. 56601]
 gi|45602620|gb|AAS72095.1| dsRNase III [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 247

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62
              L K+IG  F+       A  HSS  +  QE     ERLEFLGD +LGL+ +  LF  
Sbjct: 21  LQKLSKKIGIKFSKVEYYNTAFIHSSYKNENQEILEDNERLEFLGDSVLGLVAARSLFRK 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  A EGELS   + +VS    + ++ +L+L+ ++ +    +  +      + A++ ESL
Sbjct: 81  YPKANEGELSRIKSRIVSTPILNSISEKLELSEYLLLGKGEKNSLGKGRRKLSANLFESL 140

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YLD G E+A  F+ ++  +      K    RD KT+LQE++   F + P Y+    
Sbjct: 141 VGAIYLDQGFEIAEKFILRHLSEFVENPEKEESVRDYKTQLQEYSQKHFKILPIYRTKSE 200

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGPDH   F VVV I     A G   SK++AEQ AA E+  R 
Sbjct: 201 SGPDHAKTFQVVVRIRDQWEASGSGVSKKSAEQNAAKELYNRI 243


>gi|158297080|ref|XP_555381.3| AGAP008087-PA [Anopheles gambiae str. PEST]
 gi|157015023|gb|EAL39656.3| AGAP008087-PA [Anopheles gambiae str. PEST]
          Length = 1404

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 101/227 (44%), Gaps = 14/227 (6%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             +  E  IG  F +  LL +A T  S   ++    S +RLEFLGD +L L+ S  L+ HF
Sbjct: 950  LTRFEDSIGVQFNHIRLLARAFTDRSIGFTNLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1009

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG LS+  +SLV+  T + V  +L +  +   S+          T  +AD++E+ +
Sbjct: 1010 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTQYAVYSNPKADLK----TKDRADLLEAFL 1065

Query: 124  AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA------HAKFGVTPEY 175
             ALY+D G+E    F         +     +   D K++LQ+               P Y
Sbjct: 1066 GALYVDKGLEYCEMFCHVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPVY 1125

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            KV   +GP +   ++V V   G   A     S + AE  AA + L+ 
Sbjct: 1126 KVIECTGPTNTRVYSVAVYFRGKRLACADGHSIQQAEMNAAKQALEN 1172



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
            + LE+ IGY F NR  L+ ALTH S   ++  +
Sbjct: 718 LNVLERYIGYTFTNRYTLQLALTHPSYKENFGTN 751



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 57/128 (44%)

Query: 33  SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD 92
           + S     ERLEFLGD ++  + S  LF+ F   +EG L+    ++V  +  + +A++L 
Sbjct: 800 TDSNITHNERLEFLGDAVVEFITSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLH 859

Query: 93  LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
           L  F+  +          +    A+  E+L+ AL LDGGIEVA         Q       
Sbjct: 860 LEEFMLYAHGSDLCHELELRHALANCFEALMGALLLDGGIEVADRVFAYALFQEDDTLRG 919

Query: 153 FRRDAKTE 160
              +  + 
Sbjct: 920 IWVNYPSH 927


>gi|145588593|ref|YP_001155190.1| ribonuclease III [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145046999|gb|ABP33626.1| RNAse III [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 263

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 112/226 (49%), Gaps = 9/226 (3%)

Query: 1   MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIST 57
           M+A   +  +TL++R+GY F    LL +ALTH S S    ++ ERLEFLGD IL  +++ 
Sbjct: 1   MNARAVIETATLQERLGYVFKKTELLNQALTHRSHSK---KNNERLEFLGDSILNCVVAD 57

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           LL+  +    EG+LS    +LV  +   ++A+ L L+  +R+     K       SI AD
Sbjct: 58  LLYERYSDLDEGDLSRVRANLVKQQALYEIAQTLLLSDHLRLGEGELKSGGFRRPSILAD 117

Query: 118 VVESLIAALYLDGGIE--VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            +E++  A++LDGG +                +      +D KT LQE         P Y
Sbjct: 118 TLEAVTGAIFLDGGFDAAKDCLRKLYSVILAQVDPKTLGKDDKTLLQECLQGYQLPLPTY 177

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220
            VT  +G  H+ +F V   I  L  + +G   S+RAAEQ AA   L
Sbjct: 178 NVTGTTGAAHNQQFEVECLIPSLKVSVKGDGASRRAAEQSAAKIAL 223


>gi|317484890|ref|ZP_07943780.1| ribonuclease III [Bilophila wadsworthia 3_1_6]
 gi|316923872|gb|EFV45068.1| ribonuclease III [Bilophila wadsworthia 3_1_6]
          Length = 233

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 5/226 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLF 60
           +    L+ RIGY F + SLL  A+THSS ++ +       ERLEFLGD +L + +S  LF
Sbjct: 1   MTLDVLQDRIGYRFKDESLLVLAVTHSSWANEHSAGNAHNERLEFLGDAVLEIAVSAQLF 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A+EGEL+   +SLV+  T + +AR+L L   +R++            S+ +D +E
Sbjct: 61  ARFPDAREGELTRLRSSLVNEATLAVIARKLHLDDCLRLARGEENQGGRQRDSLLSDAME 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++   +++DGGIE A   V++ +     K+     R+D KT+LQE         P Y + 
Sbjct: 121 AVFGGVFVDGGIEKARAVVERLYTDLWPKNATKVRRKDFKTKLQEATQRISKGLPVYALE 180

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GP+H   F+V V++      +      + AEQ AA   L   G
Sbjct: 181 DSYGPEHAKIFSVRVDLPDGRQFRASGPGLKRAEQEAAHVALVALG 226


>gi|307823639|ref|ZP_07653868.1| ribonuclease III [Methylobacter tundripaludum SV96]
 gi|307735624|gb|EFO06472.1| ribonuclease III [Methylobacter tundripaludum SV96]
          Length = 227

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 113/224 (50%), Gaps = 6/224 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L K++G  F N  L   ALTH S S     + ERLEFLGD ILG +I+  LF  F  A
Sbjct: 6   EELCKKLGLKFNNPQLFTMALTHRSAS---SNNNERLEFLGDSILGFVIAQKLFELFPGA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG LS    SLV+  + +++AR+  L  ++ + S   K       SI +D VE++I AL
Sbjct: 63  CEGVLSRLRASLVNQGSLAELARKHQLGDYLLLGSGELKSGGFRRDSILSDAVEAIIGAL 122

Query: 127 YLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           Y D G++ +  ++ + + ++        +++D KT+LQE   ++    P+Y +   SG  
Sbjct: 123 YNDQGMDASQQWILQLFAEKLKSLSLDNWQKDPKTQLQELMQSRKMELPDYTLMTMSGLA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           H+  F V         P  G   S++ AEQ AA  +L+     T
Sbjct: 183 HEQTFKVKCTTPLTAEPCIGTGNSRKKAEQSAAELMLELLNKDT 226


>gi|311742943|ref|ZP_07716751.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
 gi|311313623|gb|EFQ83532.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
          Length = 232

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 95/220 (43%), Gaps = 3/220 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
             L   +G    +  LL  ALTH S ++      + ERLEFLGD +LGL+++  LF    
Sbjct: 2   DALRDVLGVPDLDPELLRHALTHRSYAYENGQIPNNERLEFLGDSVLGLVVTDSLFRAHP 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    ++VSA+  + VAR L +   +R+             SI +D VE++I 
Sbjct: 62  DLPEGQLAKLRAAVVSAKALAVVARTLGIGDVVRLGRGEETTGGRDKASILSDTVEAVIG 121

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A++L  GIE A   V + +      +             +   A  G+         +GP
Sbjct: 122 AVFLQFGIERAAEVVHRVFDPVMADAASLGAALDWKTSLQEMAAHHGLGVPRYHLEGTGP 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   FT  V +     A G   SK+ AEQ  A    +  
Sbjct: 182 DHARSFTAEVHLGERVFAGGAGRSKKEAEQEVAEIAWRTL 221


>gi|33593415|ref|NP_881059.1| ribonuclease III [Bordetella pertussis Tohama I]
 gi|33597819|ref|NP_885462.1| ribonuclease III [Bordetella parapertussis 12822]
 gi|33602721|ref|NP_890281.1| ribonuclease III [Bordetella bronchiseptica RB50]
 gi|81424808|sp|Q7VW39|RNC_BORPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81426476|sp|Q7W5J6|RNC_BORPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81429935|sp|Q7WD32|RNC_BORBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|33572771|emb|CAE42703.1| ribonuclease III [Bordetella pertussis Tohama I]
 gi|33574248|emb|CAE38580.1| ribonuclease III [Bordetella parapertussis]
 gi|33577163|emb|CAE35720.1| ribonuclease III [Bordetella bronchiseptica RB50]
 gi|332382824|gb|AEE67671.1| ribonuclease III [Bordetella pertussis CS]
          Length = 256

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 115/224 (51%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+A+  +TLE R+ + F +++LLE+ALTH S         ERLEFLGD +L  +++ +LF
Sbjct: 1   MTAMSLATLETRLDHRFGDKALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EG+LS    +LV   + + +A+ LDL+ ++R+     K       SI AD VE
Sbjct: 58  ERYGKLDEGDLSRLRANLVKQASLADIAQRLDLSQYLRLGEGELKSGGFRRPSILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           +L  A++LD G E A   + + ++            +DAKT LQE+   +    P+Y V 
Sbjct: 118 ALFGAVFLDAGFEAARRVIVRQYQPVMAHVDPKTLGKDAKTLLQEFLQGRKLALPQYTVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
              G  H  +F V   I  L         S+RAAEQ AA   L+
Sbjct: 178 ATHGAAHSQQFEVECAIPALEIKIVAPGASRRAAEQSAAKVALE 221


>gi|146329595|ref|YP_001209601.1| ribonuclease III [Dichelobacter nodosus VCS1703A]
 gi|146233065|gb|ABQ14043.1| ribonuclease III [Dichelobacter nodosus VCS1703A]
          Length = 233

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 109/219 (49%), Gaps = 6/219 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY+F N  LL++ALTH S S    +  ER E+LGD +L  +IS  L+  
Sbjct: 6   KINWQLLEHALGYSFQNPELLQRALTHRSFS---ADHNERFEYLGDALLETVISVALYRR 62

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  + EG+L+    ++V + + + +A++LDL  ++R+ S   K       SI AD VE++
Sbjct: 63  YPESPEGDLTRLRAAIVKSSSLAVIAKQLDLGRYLRLGSGELKSGGKRRESILADAVEAI 122

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
           IAA+YLD             +             +D KT LQE+  ++    P Y++   
Sbjct: 123 IAAVYLDSDFYRCEQITLALFAPAIAALPDVEALKDPKTRLQEYLQSRDLPLPVYELVEE 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            GP+H   FT+  + S          S++ AEQ AA  +
Sbjct: 183 KGPEHAKIFTISAK-SERFCTTATASSRKKAEQAAAELL 220


>gi|311898536|dbj|BAJ30944.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
          Length = 269

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 111/225 (49%), Gaps = 4/225 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
           +  Y  LE R+GY+   R+LL +ALTH S ++      + ERLEFLGD +LGL+++  L+
Sbjct: 25  STEYDVLEGRLGYSLE-RALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLY 83

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG L+    ++V++   ++V R LDL +FIR+            +SI AD VE
Sbjct: 84  RLHPEVAEGTLAKLRAAVVNSRALAEVGRGLDLGAFIRLGKGEEGTGGRDKSSILADTVE 143

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTF 179
           ++I A YLD G++ A  FV + +     +S +           +   A  G+     V  
Sbjct: 144 AVIGATYLDQGLDAATEFVHRLFDPLIAESAQLGAGLDWKTSLQELTAAVGLGVPEYVVT 203

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            SGPDH+  FT    ++G     G   SK+ AEQ AA    +   
Sbjct: 204 ESGPDHEKTFTAAARVAGQDHGSGSGRSKKEAEQKAAESAWRAIK 248


>gi|294340985|emb|CAZ89380.1| Ribonuclease III (RNase III) [Thiomonas sp. 3As]
          Length = 276

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 6/221 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LE R+GY F +R L E+ALTH S      +  ERLEFLGD +L L  +  L++     
Sbjct: 3   TALETRLGYVFRDRKLFERALTHRSFG---ADHNERLEFLGDSVLNLSAAAWLYHQAARQ 59

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    +LV AE  ++VAR +DL  F+R+     +   +   SI AD VE+L+ A+
Sbjct: 60  DEGQLSRLRAALVRAEALAEVARAIDLGRFLRLGEGELQSGGAQRESILADTVEALLGAI 119

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YL+ G + A   + + +            R+DAKT+LQE+   +    P Y V    G  
Sbjct: 120 YLEAGFDTAQEVMRRLFAPLMDTLDADVVRKDAKTQLQEFLQGQRLPLPSYAVLDVRGAA 179

Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F V   +  L    +G   S+R AEQ AA  +++R G
Sbjct: 180 HQQQFKVECAVEALGLKVEGEGDSRRRAEQDAATRMIERIG 220


>gi|296136816|ref|YP_003644058.1| ribonuclease III [Thiomonas intermedia K12]
 gi|295796938|gb|ADG31728.1| ribonuclease III [Thiomonas intermedia K12]
          Length = 276

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 6/221 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LE R+GY F +R L E+ALTH S      +  ERLEFLGD +L L  +  L++     
Sbjct: 3   TALETRLGYVFRDRKLFERALTHRSFG---ADHNERLEFLGDSVLNLSAAAWLYHQAARQ 59

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    +LV AE  ++VAR +DL  F+R+     +   +   SI AD VE+L+ A+
Sbjct: 60  DEGQLSRLRAALVRAEALAEVARAIDLGRFLRLGEGELQSGGAQRESILADTVEALLGAI 119

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YL+ G + A   + + +            R+DAKT+LQE+   +    P Y V    G  
Sbjct: 120 YLEAGFDTAQEVMRRLFAPLMDTLDADVVRKDAKTQLQEFLQGQRLPLPSYAVLDVRGAA 179

Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F V   +  L    +G   S+R AEQ AA  +++R G
Sbjct: 180 HQQQFKVECAVEALGLKVEGEGDSRRRAEQDAATRMIERIG 220


>gi|29654794|ref|NP_820486.1| ribonuclease III [Coxiella burnetii RSA 493]
 gi|161830652|ref|YP_001597345.1| ribonuclease III [Coxiella burnetii RSA 331]
 gi|30581027|sp|P51837|RNC_COXBU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043306|sp|A9N942|RNC_COXBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|29542062|gb|AAO91000.1| ribonuclease III [Coxiella burnetii RSA 493]
 gi|161762519|gb|ABX78161.1| ribonuclease III [Coxiella burnetii RSA 331]
          Length = 233

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 115/225 (51%), Gaps = 7/225 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+    + L +R+G+ F N  LL+ ALTH S   S  ++ ERLEFLGD +LG +I++ L+
Sbjct: 1   MN--HLNKLMERLGHQFNNLELLKIALTHCS---SGADNNERLEFLGDSVLGFIIASELY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                A+EG+LS    S+V+ +  +Q++ +L +  ++++    +K       SI AD +E
Sbjct: 56  QRRPQAREGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +++ A+Y+D G+E     V  ++ +R     K   +     L +       +        
Sbjct: 116 AIVGAIYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVK 175

Query: 180 RSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223
            +G  H   FTV   + GL    +G++ ++R AEQ+AA   L+  
Sbjct: 176 ITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLELL 220


>gi|156553364|ref|XP_001601748.1| PREDICTED: similar to ribonuclease iii [Nasonia vitripennis]
          Length = 1381

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 6/224 (2%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F++  LL +A T  S   ++    S +RLEFLGD +L L++S  L+  
Sbjct: 1019 KLTKFEEGIGVEFSHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1078

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T + V  +L +  +    +   +        +    + +L
Sbjct: 1079 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELKTKDRADLLEAFLGAL 1138

Query: 123  IA----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
                                +  +   +     K +                  P YKV 
Sbjct: 1139 YVDKGLLHCQVFCNVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPVYKVI 1198

Query: 179  FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               GP +   +TV V   G   A+    S + AE  +A E L++
Sbjct: 1199 ECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEK 1242



 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE+ + Y F NR LL+ ALTH S   ++  +
Sbjct: 788 LDMLEQTLDYKFKNRYLLQLALTHPSYRENFGTN 821



 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 57/122 (46%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             ERLEFLGD ++  L S  LF+ F   +EG L+    ++V  +  + +A++L+L  ++ 
Sbjct: 876 HNERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEQYML 935

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158
            +          +    A+  E+L+ AL+LDGGI +A T   +   +          +  
Sbjct: 936 YAHGSDLCHDLELRHAMANCFEALMGALFLDGGIRIADTVFGETLFKNESDLLNIWVNYP 995

Query: 159 TE 160
             
Sbjct: 996 KH 997


>gi|28199176|ref|NP_779490.1| ribonuclease III [Xylella fastidiosa Temecula1]
 gi|182681907|ref|YP_001830067.1| ribonuclease III [Xylella fastidiosa M23]
 gi|32129967|sp|Q87C06|RNC_XYLFT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238691044|sp|B2I604|RNC_XYLF2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28057282|gb|AAO29139.1| ribonuclease III [Xylella fastidiosa Temecula1]
 gi|182632017|gb|ACB92793.1| Ribonuclease III [Xylella fastidiosa M23]
 gi|307578162|gb|ADN62131.1| ribonuclease III [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 227

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M + + S  ++RIGY F + SLL +AL H S         ERLEFLGD ++ LLI+  LF
Sbjct: 1   MISSKASDYQQRIGYVFTDPSLLLQALRHRSAG---TPHNERLEFLGDSVVNLLIAEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +  A EG L+   + LV   + + +AR + L   + +     K       SI AD VE
Sbjct: 58  QRWPRADEGALTRARSELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD  +    T V  +++    AL  GK  +D KT LQEW  A+    P Y++ 
Sbjct: 118 AVIAAIYLDADLATCRTVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELI 177

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
           F SG  H   F V   +  L    +G   S+R AEQ AA+  + + 
Sbjct: 178 FESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAASHAIDQL 223


>gi|283781424|ref|YP_003372179.1| ribonuclease III [Pirellula staleyi DSM 6068]
 gi|283439877|gb|ADB18319.1| ribonuclease III [Pirellula staleyi DSM 6068]
          Length = 273

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  E+R+GY F ++ LL  ALTH+S +     S ERLEFLGD ILG+ +  +L+  F  
Sbjct: 45  LARCERRLGYVFNSKPLLRSALTHASGAEHRLASNERLEFLGDAILGVYVCEMLYRQFPD 104

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+   + +VS +TC++V+  L L  F+ +   +     +   S+ ADV ESLIAA
Sbjct: 105 YLEGDLTKVKSVVVSRQTCAKVSEALGLQEFLILGKGMS-SSPNVPPSLLADVFESLIAA 163

Query: 126 LYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGG + A  F++ Y         +G+   + K+ LQ++A  + G TP Y +    GP
Sbjct: 164 IYLDGGEQAARQFINNYIGPEVELAAAGELGGNYKSLLQQFAQRECGNTPTYHLLDEKGP 223

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH   F +   + G         +K+ AEQ AA   L    
Sbjct: 224 DHSKCFKISASVGGKKYQAAWGRNKKEAEQRAANNALAEIK 264


>gi|254423554|ref|ZP_05037272.1| ribonuclease III [Synechococcus sp. PCC 7335]
 gi|196191043|gb|EDX86007.1| ribonuclease III [Synechococcus sp. PCC 7335]
          Length = 228

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 68/214 (31%), Positives = 98/214 (45%), Gaps = 6/214 (2%)

Query: 16  AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            F N +L ++A+TH S ++      E  ERLEFLGD IL  L +  LF  F    EGEL+
Sbjct: 15  TFTNSALWQQAMTHKSFANEQPTATEHNERLEFLGDAILTFLSAEYLFVRFPKQSEGELT 74

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              ++LV      + A+ L L  ++R+     K+       +     E+LI A +LD   
Sbjct: 75  PMRSALVDQSQLHRFAQGLKLDEYLRLGKGAEKEGARKSARLLCSAFEALIGAYFLDQEH 134

Query: 133 E---VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
               V       +    A       +D KT LQEWA    G  PEY      GPDH   F
Sbjct: 135 NLQLVKDYITPIFESAIAPDVEAGVKDDKTRLQEWAQKTTGSVPEYVEISTLGPDHAKEF 194

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + V+I G +  +G   SK+ A+++AA   L+  
Sbjct: 195 VIEVQIGGKSYGRGSGRSKQKAQKLAARSTLEML 228


>gi|227504755|ref|ZP_03934804.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
 gi|227198605|gb|EEI78653.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
          Length = 256

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 4/224 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
           A+ ++ L K +G   A+ +L   ALTH S ++      + ERLEFLGD +LGL +++ L+
Sbjct: 19  AVDHAPLLKSLGVELADENL-RLALTHRSFANENGYLPNNERLEFLGDAVLGLSVASKLY 77

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + S  E ++S    S+VS    S +ARE++L   I +    +        SI AD  E
Sbjct: 78  EQYPSRPESDISKMRASIVSRYGLSDIAREIELGQHILLGKGEQSTGGRDKDSILADTTE 137

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++  A+Y   G E A   + + ++++   +    R    +            P    T  
Sbjct: 138 AIFGAIYRQYGFETARDVILRLFQKKIDNAVVSGRHMDWKTNLQELCAELKAPMPVYTAT 197

Query: 181 S-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           S GP+HD  FT V  ++GL    G+  +K+ AEQ AA E  +  
Sbjct: 198 STGPEHDQTFTAVATVAGLTVGNGVGHNKKLAEQQAAQEACQTL 241


>gi|315640113|ref|ZP_07895235.1| ribonuclease III [Enterococcus italicus DSM 15952]
 gi|315484090|gb|EFU74564.1| ribonuclease III [Enterococcus italicus DSM 15952]
          Length = 233

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 5/214 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M     ++L++     F    LLE+A THSS  + ++       ERLEFLGD +L LL+S
Sbjct: 4   MDNQFVTSLKENYQIVFQEIGLLEQAFTHSSYVNEHRNMALSDNERLEFLGDAVLELLVS 63

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  F    EG+L+    S+V  ++ ++ ARE     +IR+             S+  
Sbjct: 64  QYLYRKFPEIPEGKLTKLRASMVREDSLAEFARECGFDQYIRLGKGEENSGGRQRNSLLC 123

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ ES + ALYLD  +E    F+ K    +          D KT+LQE       V  +Y
Sbjct: 124 DLFESFLGALYLDQELEAVNQFLKKVVFPKVDAGAFSHEMDHKTKLQEVLQRAGDVFIDY 183

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           ++T   GP H+  F   V   G    +G   SK+
Sbjct: 184 RLTNEEGPAHERVFWTEVYCDGQLIGRGQGKSKK 217


>gi|228474955|ref|ZP_04059683.1| ribonuclease III [Staphylococcus hominis SK119]
 gi|228270940|gb|EEK12328.1| ribonuclease III [Staphylococcus hominis SK119]
          Length = 243

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++    K +G ++ +  + ++A +HSS  + +        ERLEFLGD +L L +S  LF
Sbjct: 15  QFDKKMKMLGLSYTHLDVYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + + +  EG L+    ++V   +    A +++L   I +     K       S+ +D  E
Sbjct: 75  DKYPNLPEGNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKTGGRTRPSLVSDAFE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G+EV   F  K        +      D KT+ QE+ H++      Y +  
Sbjct: 135 AFIGALYLDQGLEVVWKFAQKVIFPYVEHNELIGVVDFKTQFQEYIHSQSKGDVTYHLIK 194

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H   FT  V +   A A+G   +K+ +EQ AA     + 
Sbjct: 195 EEGPAHHRLFTSEVILENKAIAKGQGRTKKESEQKAAESAYHKL 238


>gi|189499162|ref|YP_001958632.1| Ribonuclease III [Chlorobium phaeobacteroides BS1]
 gi|189494603|gb|ACE03151.1| Ribonuclease III [Chlorobium phaeobacteroides BS1]
          Length = 271

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65
           LE  +G++  +  L   ALTH SI H +    +S +RLEFLGD +L L+IS LL+  F  
Sbjct: 43  LEDILGFSPIDEKLYVIALTHRSIVHDHPEASDSNQRLEFLGDAVLDLIISELLYTVFPE 102

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           + EG+LS     +V+ ++ +  A ++ L   + +     K      TS  AD  E+LI A
Sbjct: 103 SDEGKLSSNRAKIVNRKSLAGFAGKISLGEHLLIGETADKINIQTSTSSLADAFEALIGA 162

Query: 126 LYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           LYLD G+E    F+ ++        K      + K+ L E+  +     P Y V    G 
Sbjct: 163 LYLDKGLEETRKFIMRHVAGHVDIKKIDTVENNYKSRLIEYTQSCQIAPPVYTVVSEEGA 222

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +H+  FT+ V        +G    K+ AEQ AA E L+  
Sbjct: 223 EHEKLFTIEVSCDNRPLGKGSARRKKDAEQTAAREALEEL 262


>gi|319943505|ref|ZP_08017787.1| ribonuclease III [Lautropia mirabilis ATCC 51599]
 gi|319743320|gb|EFV95725.1| ribonuclease III [Lautropia mirabilis ATCC 51599]
          Length = 247

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 76/219 (34%), Positives = 112/219 (51%), Gaps = 6/219 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           TLE R+GY F + +LL +ALTH S     ++  ERLEFLGD +L   +++LL+  F  + 
Sbjct: 26  TLEGRLGYRFQSEALLVQALTHRS---HGRQHNERLEFLGDSVLNCAVASLLYARFADSP 82

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG LS    +LV  +    +A  L L   + +    RK       SI AD VE+L+ A++
Sbjct: 83  EGALSRLRANLVKQDPLHDIACGLSLPDALILGEGERKSGGHRRPSILADAVEALLGAIF 142

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           L+ G   A   V++ ++    A+   +  +DAKT LQE+        P Y+V    G  H
Sbjct: 143 LESGFAAAAGVVERLYQPLLDAIDPHELGKDAKTRLQEYLQGHRLPLPRYQVVATHGQAH 202

Query: 186 DPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           D RF V  ++       +G   S+R AEQVAA   L+  
Sbjct: 203 DQRFDVECQLDKPKLSFEGSGESRRKAEQVAARAALEHL 241


>gi|157119283|ref|XP_001653338.1| ribonuclease iii [Aedes aegypti]
 gi|108875392|gb|EAT39617.1| ribonuclease iii [Aedes aegypti]
          Length = 1374

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 103/227 (45%), Gaps = 14/227 (6%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             +  E  IG  F +  LL +A T  S   ++    S +RLEFLGD +L L+ S  L+ HF
Sbjct: 945  LTKFEDAIGVNFNHIRLLARAFTDRSIGFTNLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1004

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG LS+  +SLV+  T + V  +L + ++   S+          T  +AD++E+ +
Sbjct: 1005 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTTYAVYSNPKADLK----TKDRADLLEAFL 1060

Query: 124  AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA------HAKFGVTPEY 175
             ALY+D G+E   TF         +     +   D K++LQ+               P Y
Sbjct: 1061 GALYVDKGLEHCETFCHVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPIY 1120

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            KV   +GP +   +TV V   G   A     S + AE  AA + L+ 
Sbjct: 1121 KVIECNGPTNTRVYTVAVYFRGKRLACSNGHSIQQAEMNAAKKALEN 1167



 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 71/210 (33%), Gaps = 55/210 (26%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES-------------------------- 39
              LE+ I Y F NR  L+ ALTH S   ++  +                          
Sbjct: 713 LDVLEEHIDYKFINRYTLQLALTHPSYKENFGTNPDHARNSLTNCGIRQPEYGDRKIHFM 772

Query: 40  --------------------YE---------RLEFLGDRILGLLISTLLFNHFDSAKEGE 70
                               YE         RLEFLGD ++  + S  LF+ F   +EG 
Sbjct: 773 NTRKRGINTLISIMSRFGKEYETDSNITHNERLEFLGDAVVEFITSIHLFHMFPDLEEGG 832

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+    ++V  +  + +A+ L L  F+  +          +    A+  E+L+ AL LDG
Sbjct: 833 LATYRAAIVQNQHLAVLAKTLHLEEFMLYAHGSDLCHELELRHALANCFEALMGALLLDG 892

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
           GIE A         Q          +    
Sbjct: 893 GIETADRVFAYALFQEDTNLRNIWVNYPPH 922


>gi|323359692|ref|YP_004226088.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
 gi|323276063|dbj|BAJ76208.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
          Length = 230

 Score =  128 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 96/225 (42%), Gaps = 5/225 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           + +  S L +++G    +  LL  ALTH S ++        ERLEFLGD +LG  ++  L
Sbjct: 4   NNVERSALTEKLGVDI-DPELLSLALTHRSFAYENGGIPHNERLEFLGDSVLGQAVTVRL 62

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F       EG+L+ R   +VS    ++VAR + L   +R+             SI AD +
Sbjct: 63  FTRHPDLDEGQLAKRRAGVVSTIALAEVARGIGLGQHVRLGRGEILTGGHDKDSILADTM 122

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVT 178
           E++I A YL  G + A   V +  +       ++          +   A+  V       
Sbjct: 123 EAIIGATYLSAGPDAATAMVLRLVEPLMADPARYGAAMDPKTSLQEIAARLSVPAPTYSV 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +GPDHD RFT  V +       G   SK+ AE  AA    +  
Sbjct: 183 EAAGPDHDRRFTATVRVGD-VVTTGTGSSKKQAEMAAALTAWREL 226


>gi|223937314|ref|ZP_03629220.1| Ribonuclease III [bacterium Ellin514]
 gi|223894099|gb|EEF60554.1| Ribonuclease III [bacterium Ellin514]
          Length = 231

 Score =  128 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 5/210 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61
             + L+  +GYAF    LL+ ALTH S++H  +   +  +RLEFLGD +L L+++  L++
Sbjct: 3   DLNNLQTALGYAFRKIELLQLALTHPSVAHEQRTPVQHNQRLEFLGDAVLQLVLTHELYS 62

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG L+     LV+    ++  R L+L + + +S            S  AD  E+
Sbjct: 63  KFPDFGEGPLTKARAKLVNRRALAEQGRALNLGAHLILSRGEEAHGGRLRPSALADTFEA 122

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A++LDGG E    F+   +     +        + K ELQE   AK    P+Y V  
Sbjct: 123 LLGAIFLDGGFEAVEKFLLARFHDMLAEISALPALENPKGELQELLQAKSSEAPQYNVVS 182

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            SGPDHD  F  +V+ +G+  A G   SK+
Sbjct: 183 TSGPDHDRVFECIVQHNGVELAHGRGKSKK 212


>gi|330993372|ref|ZP_08317307.1| Ribonuclease 3 [Gluconacetobacter sp. SXCC-1]
 gi|329759402|gb|EGG75911.1| Ribonuclease 3 [Gluconacetobacter sp. SXCC-1]
          Length = 258

 Score =  128 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 84/233 (36%), Positives = 123/233 (52%), Gaps = 15/233 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--------------YERLEFLGDRIL 51
              LE  +GY F    LL +ALTH S +H    +               ERLEF+GDR+L
Sbjct: 11  IRRLEACLGYHFTRPELLLRALTHRSAAHERSGNRRTRQNVATRGAGSNERLEFIGDRVL 70

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
           GL+++  L   F + +EG L  R   LVS    ++VA  + L S + V+    +     M
Sbjct: 71  GLVMAEWLLERFPTEQEGALGPRHAHLVSRTVLAEVAHAMALQSALDVAEHEARAGVRQM 130

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
            ++ AD VE+++ A+YLDGG++ A  FV + W+   +   +  +D KT LQEW   +   
Sbjct: 131 ANVLADAVEAILGAIYLDGGLDPARAFVRRMWQDAIVAQARPPKDPKTALQEWVLGRGLP 190

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            P Y+V    GP H PRF + V+  G    QG+  SKRAAE  AAA++L++ G
Sbjct: 191 LPRYRVVSAEGPSHAPRFVIAVDAQGKT-GQGVAGSKRAAESDAAADLLRQLG 242


>gi|332305561|ref|YP_004433412.1| ribonuclease III [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172890|gb|AEE22144.1| ribonuclease III [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 227

 Score =  128 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 115/228 (50%), Gaps = 7/228 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +  Y  L K++GY F + + L  ALTH S+        ERLEFLGD +LGL+I+  L
Sbjct: 1   MQLIDPYKPLYKKLGYEFQDPNNLTIALTHRSVG---ANHNERLEFLGDAVLGLVIAKAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F    EG L+   +SLV  +T ++VARE  L   + +     K       SI AD V
Sbjct: 58  FERFPKQPEGNLTRMRSSLVKGDTLAEVAREFALGDLLLLGPGELKSGGHRRDSILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+Y + G++     +  ++ +R          +D KT LQE+   +    PEY+V
Sbjct: 118 EAIIGAIYQEVGMQGCEPLILAWFAKRIEALNPDATPKDDKTRLQEYLQGRQLPLPEYEV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREG 224
              SG  HD  FTV   ++GL  P  G   S+R AEQ  A + L+   
Sbjct: 178 IDISGKSHDQTFTVKCTVAGLNSPIIGRGKSRRRAEQRTAKQALENLK 225


>gi|331703478|ref|YP_004400165.1| ribonuclease III [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802033|emb|CBW54187.1| Ribonuclease III [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 232

 Score =  128 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 6/230 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +      ++      N  L  +ALTH+S ++ ++   SY+RLEFLGD IL + +S  LF 
Sbjct: 1   MNIKNFFEKYNIKINNEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFF 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++    EGEL+    S V  ET  +VA++++L + +++             SI ADV E+
Sbjct: 61  NYSKLSEGELTRLRASTVREETLFRVAKDINLGALVKLGHGEYITKGYEKPSILADVFEA 120

Query: 122 LIAALYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           L AA+YLD   +         + KY K     +      ++ +    +  +  +    + 
Sbjct: 121 LTAAIYLDQKEDGLVTWLDQTLFKYIKDSNFINDTKDFKSELQELLQSEKRSDLKYIIEK 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
                 ++   +TV V ++G     G   SK+ AEQ AA++ L +    T
Sbjct: 181 EDFFANENKILYTVSVNLNGQKFGVGKGFSKQEAEQNAASDCLSKLKKPT 230


>gi|288560534|ref|YP_003424020.1| ribonuclease III Rnc [Methanobrevibacter ruminantium M1]
 gi|288543244|gb|ADC47128.1| ribonuclease III Rnc [Methanobrevibacter ruminantium M1]
          Length = 232

 Score =  128 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 63/217 (29%), Positives = 94/217 (43%), Gaps = 2/217 (0%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +  +      +  L E A THSS  S  +   YERLEFLGD +L +L S  L N     
Sbjct: 2   DILNKFDIVPNDMELYETAFTHSSYASKHHLNDYERLEFLGDSVLNMLTSEFLQNMHPDF 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    + V        + E  L   ++++ +      + + SI ADV ES + A+
Sbjct: 62  GEGKLTKLRANYVCQNALIVYSHEFGLDKCVKLNLEDNALTDNEVISITADVFESFLGAI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLD GI     F+             F  D K+ ++E+  A         +    G  HD
Sbjct: 122 YLDQGISKCKEFLTITVFPYIENEQIFFHDYKSTIKEYGDAIDKEITYE-LIEEHGAPHD 180

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F + + I G+    G+  SK+ AEQVAA   +K  
Sbjct: 181 KTFVMKILIDGVDFGHGVGKSKKEAEQVAACNAIKTL 217


>gi|153816163|ref|ZP_01968831.1| hypothetical protein RUMTOR_02411 [Ruminococcus torques ATCC 27756]
 gi|317500483|ref|ZP_07958707.1| ribonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089416|ref|ZP_08338315.1| ribonuclease III [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145846498|gb|EDK23416.1| hypothetical protein RUMTOR_02411 [Ruminococcus torques ATCC 27756]
 gi|316898238|gb|EFV20285.1| ribonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404784|gb|EGG84322.1| ribonuclease III [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 228

 Score =  128 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 109/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M   +   LE++IGY F N S LE+A+ HSS ++ ++       ERLEFLGD +L L+ S
Sbjct: 1   MHK-KLKELEQKIGYRFRNFSFLEQAMMHSSYTNEHRMEKYRCNERLEFLGDAVLELISS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF       EGEL+    S+V  ++ +  AR++DL S++ +          F  S+ +
Sbjct: 60  EFLFRQSPKVPEGELTKTRASMVCEQSLAMCARDIDLGSYLLLGKGEEVTGGRFRDSVTS 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LI A+YLDGG           +     +  K   D+KT LQE   A+     EY 
Sbjct: 120 DALEALIGAIYLDGGF-TNAKEFIHRFVLTDQEDKKLFYDSKTILQEIVQAEKLGEIEYH 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +    GPDH+  F+V + I G +  +G   +K+
Sbjct: 179 LIGEEGPDHNKSFSVELTIRGRSYGKGKGRTKK 211


>gi|38234119|ref|NP_939886.1| ribonuclease III [Corynebacterium diphtheriae NCTC 13129]
 gi|81564732|sp|Q6NGH3|RNC_CORDI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|38200381|emb|CAE50069.1| ribonuclease III [Corynebacterium diphtheriae]
          Length = 249

 Score =  128 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 101/221 (45%), Gaps = 4/221 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
            ++ +  L   +G     R LL  ALTH S ++      + ERLEFLGD +LGL ++  L
Sbjct: 19  ESVDHQPLIDALGVDIP-RELLVLALTHRSFANENGMLPNNERLEFLGDSVLGLSVAGQL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + S+ E ++S    S+VS    + +ARE++L   I +    +        SI AD  
Sbjct: 78  YQQYTSSPESDISKMRASIVSRYGLADIAREINLGQHILLGKGEQLHDGRSKDSILADTT 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+L+ A+YL  G E+A   V + +K +   +         +                 T 
Sbjct: 138 EALLGAIYLAHGFEIARDTVLRLFKHKIDTASATGLHQDWKTTLQERLAERNLEMPTYTS 197

Query: 180 R-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             +GP+H+  FT  V + G     G+  +K+ AEQ AA + 
Sbjct: 198 TVTGPEHEQTFTAEVAVHGTVLGTGVGTNKKLAEQAAAHKA 238


>gi|323137544|ref|ZP_08072621.1| ribonuclease III [Methylocystis sp. ATCC 49242]
 gi|322397170|gb|EFX99694.1| ribonuclease III [Methylocystis sp. ATCC 49242]
          Length = 234

 Score =  128 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 89/207 (42%), Positives = 125/207 (60%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +  + LE+ +G+ FA++SLL  ALTH S S    ESYERLEFLGDR+LGL ++ +L+  
Sbjct: 5   KVDLAALEESVGHRFADQSLLRWALTHVSASSQRPESYERLEFLGDRVLGLAVAHMLYEA 64

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGELS R  +LV  ETC++VA    +  ++R+     +       +I  DV E++
Sbjct: 65  FPGESEGELSRRLAALVRKETCAEVAEIWGVGPYMRLGEGEAQTGGRKKRAILGDVCEAI 124

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I A++LDGG + AG  V   +  + L++G+  RDAKT LQEWA A+    P Y++  RSG
Sbjct: 125 IGAVFLDGGADAAGRVVRAGFGPKMLEAGRDLRDAKTALQEWAQARRLPPPRYRLIARSG 184

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDH P F + V+I G   A G   SKR
Sbjct: 185 PDHAPSFEMAVDIEGFESAGGAGASKR 211


>gi|82702876|ref|YP_412442.1| ribonuclease III [Nitrosospira multiformis ATCC 25196]
 gi|82410941|gb|ABB75050.1| RNAse III [Nitrosospira multiformis ATCC 25196]
          Length = 230

 Score =  128 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 110/220 (50%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L +++GY F    LL +ALTH S S       ERLEFLGD +L   ++ L+F+HF   
Sbjct: 11  AALCRKLGYTFRRPELLRQALTHRSHS---IPHNERLEFLGDAVLNCAVAGLIFHHFPDL 67

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG LS    +LV+ +  +++A+ L+L   IR      K       SI AD +E++I A+
Sbjct: 68  SEGSLSRIRANLVNQKMLAELAQTLELGKLIRFGEGELKSGGDKRPSILADALEAVIGAI 127

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G E A   V+  +      L +    +D KT LQE+  ++    P Y V    G  
Sbjct: 128 YLDAGFEQAEKTVENLFIPSLGELNTHALGKDPKTLLQEYLQSRKLALPRYAVVATRGEA 187

Query: 185 HDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H  +F V   IS       G   S+R+AEQ AA +  ++ 
Sbjct: 188 HQQQFQVECVISRPQIRTLGEGTSRRSAEQHAARQAYEQL 227


>gi|108762302|ref|YP_631944.1| ribonuclease III [Myxococcus xanthus DK 1622]
 gi|123074286|sp|Q1D5X9|RNC_MYXXD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|108466182|gb|ABF91367.1| ribonuclease III [Myxococcus xanthus DK 1622]
          Length = 260

 Score =  128 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 117/230 (50%), Gaps = 7/230 (3%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           MS + R   LE R+G +F+      +ALTH +  +  ++      +RLEFLGD ++ L +
Sbjct: 10  MSPSERVQLLESRLGLSFSRMETALEALTHKTYVNETRDKELKDNQRLEFLGDSVVNLAV 69

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L        EG+L+     +V+ +  ++VAR + L   + +             S+ 
Sbjct: 70  SHRLMARCPGLPEGDLTKMRARVVNEDGLARVARTIPLGDLLLLGRGELMSGGREKNSVL 129

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTP 173
           AD +E++  A++L  G++ A T VD+Y+      + SG+ R D KT LQE AH +  + P
Sbjct: 130 ADALEAVFGAVFLTSGLDAAVTLVDRYFADLLDEVSSGQGRLDYKTLLQEMAHERLKLQP 189

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            Y+V   SGP+H   F V + +   A A+    SK+ AEQ AA   L++ 
Sbjct: 190 RYRVVSESGPEHSKVFEVELMLGETAFARATGRSKKEAEQSAAQATLEKL 239


>gi|209884975|ref|YP_002288832.1| ribonuclease III [Oligotropha carboxidovorans OM5]
 gi|209873171|gb|ACI92967.1| ribonuclease III [Oligotropha carboxidovorans OM5]
          Length = 288

 Score =  128 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 87/204 (42%), Positives = 120/204 (58%), Gaps = 3/204 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +E+RIG+ F N +LL+ ALTH S    S +  +SY+RLEFLGD +LGL++S +L+  
Sbjct: 60  LREIEQRIGHTFKNPNLLKTALTHVSALKPSQNRTDSYQRLEFLGDHVLGLIVSDMLYGA 119

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A EGE+S R   LV  E C  VA+ L L   I++ +           SI  D+ E++
Sbjct: 120 FPKADEGEMSKRLADLVRKEACVDVAKSLGLHENIKLGTVGAGVGARLRNSIVGDICEAV 179

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I A++LDGG + A  FV   W +R  +  +  RD KT LQEWA  K   TP Y+   R+G
Sbjct: 180 IGAIFLDGGYDAAEQFVLSNWTERMRRPVRPLRDPKTILQEWAQGKGLPTPVYREVERTG 239

Query: 183 PDHDPRFTVVVEISGLAPAQGMDC 206
           P HDPRF V V++ GLA A+G+  
Sbjct: 240 PHHDPRFRVAVDLPGLASAEGIGS 263


>gi|30250251|ref|NP_842321.1| rnc; ribonuclease III (RNAse III) protein [Nitrosomonas europaea
           ATCC 19718]
 gi|81436192|sp|Q820I0|RNC_NITEU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|30181046|emb|CAD86236.1| rnc; ribonuclease III (RNAse III) protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 245

 Score =  128 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 6/220 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y+   +++GY F    LL +ALTH S+      + ER EFLGD +L   +STLLF  F 
Sbjct: 23  DYAVFLQKLGYTFKQPDLLREALTHRSLGF---PNNERFEFLGDSVLNCAVSTLLFKRFP 79

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           S  EG+L+    + V+ +   ++A  L +   I +    RK       SI A+ VE++I 
Sbjct: 80  SLPEGDLTRLRANFVNQQALHRLASALGIGELILLGEGERKSGGHHRPSILANAVEAIIG 139

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL+ G  V    +   ++    +       +D+KT LQE+  ++    PEY V    G
Sbjct: 140 AIYLESGFAVVEQVIVALYEPLIRQLDPDTSGKDSKTLLQEYLQSRKIALPEYSVLLAQG 199

Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
             H   F V   I G     +G   S+R AEQ AA +  +
Sbjct: 200 DPHAQVFHVECVIPGFGIRTRGEGTSRRRAEQEAARQAYE 239


>gi|90109239|pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (D44n)
           Complexed With Product Of Double-Stranded Rna Processing
 gi|90109240|pdb|2EZ6|B Chain B, Crystal Structure Of Aquifex Aeolicus Rnase Iii (D44n)
           Complexed With Product Of Double-Stranded Rna Processing
          Length = 221

 Score =  128 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 115/223 (51%), Gaps = 14/223 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LEK++GY F ++SLLEKALTH S S   +E YE LEFLG+ ++   I  LL  +  +
Sbjct: 4   LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGNALVNFFIVDLLVQYSPN 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG LS     L+S E  + +A++L+L  FIR+             +I  DV E+L AA
Sbjct: 62  KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFEALWAA 115

Query: 126 LYLDGGIEVAGTFVDKYWKQRALK-----SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +Y+D G +   T    Y   +         G+ ++D KT LQE    ++   PEY++   
Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GP H  +F V  +I       G   SK+ AEQ AA E++K  
Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIKLL 217


>gi|314936605|ref|ZP_07843952.1| ribonuclease III [Staphylococcus hominis subsp. hominis C80]
 gi|313655224|gb|EFS18969.1| ribonuclease III [Staphylococcus hominis subsp. hominis C80]
          Length = 243

 Score =  128 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++    K +G ++ +  + ++A +HSS  + +        ERLEFLGD +L L +S  LF
Sbjct: 15  QFDKKMKMLGLSYTHVDVYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + + +  EG L+    ++V   +    A +++L   I +     K       S+ +D  E
Sbjct: 75  DKYPNLPEGNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKTGGRTRPSLVSDAFE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G+EV   F  K        +      D KT+ QE+ H++      Y +  
Sbjct: 135 AFIGALYLDQGLEVVWKFAQKVIFPYVEHNELIGVVDFKTQFQEYIHSQSKGDVTYHLIK 194

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H   FT  V +   A A+G   +K+ +EQ AA     + 
Sbjct: 195 EEGPAHHRLFTSEVILENKAIAKGQGRTKKESEQKAAESAYHKL 238


>gi|256827009|ref|YP_003150968.1| ribonuclease III [Cryptobacterium curtum DSM 15641]
 gi|256583152|gb|ACU94286.1| ribonuclease III [Cryptobacterium curtum DSM 15641]
          Length = 279

 Score =  128 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 106/223 (47%), Gaps = 2/223 (0%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLF 60
             +    ++ +GY F++   L  A+TH S       + SYERLEFLGD ILG +++   F
Sbjct: 8   REKLDRAQEVLGYRFSDEHFLLSAITHPSAVEGMPVKFSYERLEFLGDSILGAVVADAAF 67

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG L+    SLV+  + SQVA EL  A FI             + S   +V E
Sbjct: 68  HRFPDLDEGGLTRIKVSLVAGSSLSQVANELGFADFIIFGQSEAGTGRRGLHSALENVYE 127

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +++AALYLDGG+EVA +F+ +              +      +    + G+TP YK+   
Sbjct: 128 AVVAALYLDGGMEVARSFIVQTLLGYMSIDMAREPENPKSALQEKLQEDGITPTYKLIET 187

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GP HD  F   V     A A+G+  +K+ AE  AA   L   
Sbjct: 188 QGPPHDRTFVAAVYAGLQALARGVGRTKKEAESKAAQTALSHL 230


>gi|256851300|ref|ZP_05556689.1| ribonuclease III [Lactobacillus jensenii 27-2-CHN]
 gi|260660724|ref|ZP_05861639.1| ribonuclease III [Lactobacillus jensenii 115-3-CHN]
 gi|282933255|ref|ZP_06338642.1| ribonuclease III [Lactobacillus jensenii 208-1]
 gi|297206169|ref|ZP_06923564.1| ribonuclease III [Lactobacillus jensenii JV-V16]
 gi|256616362|gb|EEU21550.1| ribonuclease III [Lactobacillus jensenii 27-2-CHN]
 gi|260548446|gb|EEX24421.1| ribonuclease III [Lactobacillus jensenii 115-3-CHN]
 gi|281302759|gb|EFA94974.1| ribonuclease III [Lactobacillus jensenii 208-1]
 gi|297149295|gb|EFH29593.1| ribonuclease III [Lactobacillus jensenii JV-V16]
          Length = 230

 Score =  128 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 10/229 (4%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++   L +  G  F N +LLE+A THSS  + + +    +YE+LEFLGD +L L +
Sbjct: 1   MVSTKFKNYLFEEYGIKFKNETLLEEAFTHSSYVNEHPKESAGNYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ HF S  EG+L+   +++V  E  S  A E    + I +     K       ++ 
Sbjct: 61  SDYLYRHFPSLNEGQLTRLRSNIVRTEGFSGFAIECGFPAEINLGRGEEKTGARERKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            DV E+   AL+LD G++    F+                       +      G     
Sbjct: 121 EDVFEAFNGALFLDQGMDAVQKFLKLTVYPLIDSGEFTDSRDYKTDLQELLQVNGAIKIE 180

Query: 176 KVT--FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                    P +   F V + + G   ++G   +K+AAEQVAA   L +
Sbjct: 181 YQVLEETKLPSN---FKVALFVEGKKISEGSGHNKKAAEQVAAKLALIK 226


>gi|42561014|ref|NP_975465.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|81400621|sp|Q6MTC9|RNC_MYCMS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|42492511|emb|CAE77107.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301321343|gb|ADK69986.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 232

 Score =  128 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 6/230 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +      ++      N  L  +ALTH+S ++ ++   SY+RLEFLGD IL + +S  LF 
Sbjct: 1   MNIKNFFEKYNIKINNEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFF 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++    EGEL+    S V  ET  +VA++++L + +++             SI ADV E+
Sbjct: 61  NYSKLSEGELTRLRASTVREETLFRVAKDINLGALVKLGHGEYITKGYEKPSILADVFEA 120

Query: 122 LIAALYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           L AA+YLD   +      G  + KY K     +      ++ +    +  +  +    + 
Sbjct: 121 LTAAIYLDQKEDGLVTWLGQTLFKYIKDSNFINDTKDFKSELQELLQSEKRSDLKYIIEK 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
                 ++   +TV V ++G     G   SK+ AEQ AA++ L +    T
Sbjct: 181 EDFFANENKILYTVSVNLNGQKFGVGKGFSKQEAEQNAASDCLSKLKKPT 230


>gi|331091059|ref|ZP_08339901.1| ribonuclease III [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405281|gb|EGG84817.1| ribonuclease III [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 231

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 71/212 (33%), Positives = 102/212 (48%), Gaps = 5/212 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIST 57
              +   LEK+IGY F    LL +A+ HSS ++       E  ERLEFLGD +L L+ S 
Sbjct: 1   MRQKLKELEKKIGYKFQRFDLLCQAMRHSSYANEKHMEKNECNERLEFLGDAVLELVSSE 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF       EGEL+    S+V   + +  AREL+L S++ +          +  S+ +D
Sbjct: 61  FLFFENKKMPEGELTRTRASIVCEPSLAFCARELNLGSYLLLGKGEENTGGRYRESLTSD 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+YLDGG   A  F+ ++         K   D+KT LQE     F    EY +
Sbjct: 121 ALEALIGAIYLDGGFASAKEFIHRFVLNDLEHK-KLFFDSKTILQEIVQGNFNEPIEYTL 179

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               GPDH+  F + V I       G   +K+
Sbjct: 180 LKEEGPDHNKSFFISVSIGNEVYGNGKGRTKK 211


>gi|256384023|gb|ACU78593.1| ribonuclease III [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384855|gb|ACU79424.1| ribonuclease III [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455406|gb|ADH21641.1| ribonuclease III [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 232

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 6/230 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +      ++      N  L  +ALTH+S ++ ++   SY+RLEFLGD IL + +S  LF 
Sbjct: 1   MNIKNFFEKYNIKINNEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFF 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++    EGEL+    S V  ET  +VA++++L + +++             SI ADV E+
Sbjct: 61  NYSKLSEGELTRLRASTVREETLFRVAKDINLGALVKLGHGEYITKGYEKPSILADVFEA 120

Query: 122 LIAALYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           L AA+YLD   +         + KY K     +      ++ +    +  +  +    + 
Sbjct: 121 LTAAIYLDQKEDGLVTWLDQTLFKYIKDSNFINDTKDFKSELQELLQSEKRSDLKYIIEK 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
                 ++   +TV V ++G     G   SK+ AEQ AA++ L +    T
Sbjct: 181 EDFFANENKILYTVSVNLNGQKFGVGKGFSKQEAEQNAASDCLSKLKKPT 230


>gi|317121789|ref|YP_004101792.1| ribonuclease III [Thermaerobacter marianensis DSM 12885]
 gi|315591769|gb|ADU51065.1| ribonuclease III [Thermaerobacter marianensis DSM 12885]
          Length = 329

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 105/222 (47%), Gaps = 7/222 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
              + +  G       L  +ALTH+S    + +      ERLEFLGD +L L ++  +F 
Sbjct: 74  LQRVAELTGTEPRRPELFLEALTHASYRAEHPDTAGADNERLEFLGDAVLNLCVTDHIFR 133

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EGELS    + V AET +  A+ L L   +R+             S+ AD  E+
Sbjct: 134 TYPQRPEGELSKLRAATVRAETLAVTAQRLGLGELLRLGRGEEATGGRQRPSVLADAFEA 193

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           ++AA+YL  G+E A  F+ +       +  +      D KT LQE +       P Y+V 
Sbjct: 194 VVAAVYLQEGLEGARAFILRTLGDEIRRLAESSGACDDPKTALQELSRRLGLGEPSYRVI 253

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             SGP+HDPR+TV V + G    Q +  SK+ AE+ AA   L
Sbjct: 254 DASGPEHDPRYTVEVRVGGRPLGQAVGRSKKVAEREAARIAL 295


>gi|307208065|gb|EFN85596.1| Ribonuclease 3 [Harpegnathos saltator]
          Length = 1328

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  S   ++    S +RLEFLGD +L L++S  L+  
Sbjct: 1041 KLTKFEESIGIKFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1100

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T + V  +L +  +    +   +      T  +AD++E+ 
Sbjct: 1101 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK----TKDRADLLEAF 1156

Query: 123  IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA------HAKFGVTPE 174
            + ALY+D G +    F D  +    +     +   D K++LQ+               P 
Sbjct: 1157 LGALYVDKGFKYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1216

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV    GP +   +TV V   G   A+    S + AE  +A E L++
Sbjct: 1217 YKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEK 1264



 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE  +GY F NR LL+ ALTH S   ++  +
Sbjct: 810 LDNLECTLGYEFKNRYLLQLALTHPSYRENFGTN 843



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 59/130 (45%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
              ERLEFLGD ++  L S  LF+ F   +EG L+    ++V  +  + +A++L+L  ++ 
Sbjct: 898  HNERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYML 957

Query: 99   VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158
             +          +    A+  E+L+ +L+LDGGIEVA     +   +      K   +  
Sbjct: 958  YAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKDEEDLAKVWVNYP 1017

Query: 159  TELQEWAHAK 168
                +     
Sbjct: 1018 RHPLQEQEPM 1027


>gi|289547872|ref|YP_003472860.1| ribonuclease III [Thermocrinis albus DSM 14484]
 gi|289181489|gb|ADC88733.1| ribonuclease III [Thermocrinis albus DSM 14484]
          Length = 237

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/214 (30%), Positives = 110/214 (51%), Gaps = 3/214 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +EK +GY+F + SLLE+ALTH S++   + SYE LEFLGD ++ L +  LL  +F  ++E
Sbjct: 12  IEKVLGYSFRDPSLLEEALTHRSVAVG-RRSYEVLEFLGDALINLFVVDLLLQNFPQSRE 70

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L++     VS +  SQ+++EL L S I++    +    S +  +   +  ++      
Sbjct: 71  GQLAIMKAFFVSEDFLSQLSQELGLESLIKMERRRKNISSSILADVFEALWGAIYMDTGR 130

Query: 129 D-GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           D                 + +K G +R+D KT LQE     +   P Y++    GP H+ 
Sbjct: 131 DLNTTRDLFFKNYGERILQVVKEGSYRKDYKTLLQELTQHLWKTRPTYRLIGTEGPHHNR 190

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            F V  ++ G   A G   SK+ AEQ +A ++ +
Sbjct: 191 IFEVECQV-GSYRAVGKGKSKKEAEQESAKKLYE 223


>gi|296120504|ref|YP_003628282.1| ribonuclease III [Planctomyces limnophilus DSM 3776]
 gi|296012844|gb|ADG66083.1| ribonuclease III [Planctomyces limnophilus DSM 3776]
          Length = 263

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 116/220 (52%), Gaps = 3/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  E R+GY F +  LL +AL+H+S + +  ES ERLEFLGD ILG  +  LLF  +  
Sbjct: 10  LTECEARLGYHFRSPELLMQALSHASAAKTRLESNERLEFLGDAILGAAVCDLLFRKYPK 69

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           + EGEL+   + +VS   C  +A+EL L  F+ +   L     +   SI +   ES+IAA
Sbjct: 70  STEGELTRIKSFVVSRHVCGLLAKELHLDQFVIIGKGL-CGTPNVPVSILSATFESVIAA 128

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ++LDGG + A  F+ +  +    +    ++ R+ K+ LQ++A    G TP Y +    GP
Sbjct: 129 VFLDGGFDAAKEFIIRLIEPHVEQMVGAEYGRNYKSVLQQYAQKTLGETPRYDLLKEYGP 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   F V   +  +  A     +K+ AEQ AAA  L   
Sbjct: 189 DHLKYFKVSAALGEVVYAAAWGINKKEAEQKAAANALSEL 228


>gi|120602683|ref|YP_967083.1| ribonuclease III [Desulfovibrio vulgaris DP4]
 gi|120562912|gb|ABM28656.1| RNAse III [Desulfovibrio vulgaris DP4]
 gi|311234148|gb|ADP87002.1| ribonuclease III [Desulfovibrio vulgaris RCH1]
          Length = 228

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 111/224 (49%), Gaps = 7/224 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57
           M  +    L+K IG+ F +  LL  A+THSS ++      E  ERLEFLGD +L L +S 
Sbjct: 1   MKPVD--ELQKTIGHRFGDMELLLTAMTHSSWANEQAVPVEHNERLEFLGDAVLELCVSE 58

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  F SA+EG+L+   + LVS  +   VAREL L   +R+             S+ +D
Sbjct: 59  ELFRRFPSAREGDLTRMRSRLVSKPSLEGVARELRLDMSLRLGKGEESQGGRERGSLLSD 118

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY 175
            +E+++ A++LD G   A   V +       +       +D K++LQE     F   P Y
Sbjct: 119 ALEAMLGAVFLDAGYIAAKGVVMRILGPHFPEALVPVRTKDYKSQLQELTQKLFRDRPVY 178

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            +   SGP+HD +F V V +      +    S + AEQ+AAA  
Sbjct: 179 TLLGSSGPEHDKQFDVRVVLPDGTVFEATGPSMKRAEQMAAARA 222


>gi|256832889|ref|YP_003161616.1| ribonuclease III [Jonesia denitrificans DSM 20603]
 gi|256686420|gb|ACV09313.1| ribonuclease III [Jonesia denitrificans DSM 20603]
          Length = 241

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/214 (34%), Positives = 103/214 (48%), Gaps = 6/214 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           S L  ++G    +  LL  ALTH S +H      + ERLEFLGD +LGL+ +  LF    
Sbjct: 13  SELLSKLGIHL-DPELLVLALTHRSFAHEAGGIPTNERLEFLGDAVLGLVSAEALFRGHP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    + VS    +Q AR L+L S+I +     +   +   SI +D VE++I 
Sbjct: 72  DRPEGDLARMRAATVSQRPLAQAARTLNLGSYILLGKGESRTGGADKDSILSDTVEAIIG 131

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+Y+  G+E A  FV +   +   ++       D KT +QE         P Y  T + G
Sbjct: 132 AVYVTHGLETAREFVHRLLGETMREAATMGAGLDWKTAIQELCAQLGYPQPTYDFTSQ-G 190

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           PDH   FT  V I       G   SK+ AEQ AA
Sbjct: 191 PDHARVFTSTVVIEDRRYGSGEGTSKKLAEQQAA 224


>gi|329890079|ref|ZP_08268422.1| ribonuclease III [Brevundimonas diminuta ATCC 11568]
 gi|328845380|gb|EGF94944.1| ribonuclease III [Brevundimonas diminuta ATCC 11568]
          Length = 238

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 85/226 (37%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
            + L +R+G+ F + SLLE+ALTHSS+            ERLEFLGDR+LGLL++  L  
Sbjct: 13  VAALRQRLGHDFEDASLLERALTHSSVGEGAGPQVPADNERLEFLGDRVLGLLVADRLVR 72

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + SA EG+LS R ++LV    C++V   L +   +R+S    K        + AD VE+
Sbjct: 73  DYPSADEGQLSARLHALVDKSACARVGERLGVGDALRLSPGETKTGGRRKAGVIADAVEA 132

Query: 122 LIAALYLDGG-IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++AA+Y DGG I     F   + ++ A        + K+ LQEWA  +    P Y+V  R
Sbjct: 133 ILAAVYRDGGLIAAQTVFERAWAEELAAPPSAAVTNPKSALQEWAQGQGRPLPTYEVVQR 192

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           +G DH P FTV   ++G  PA+    S++ AE+ AA  +LKRE + 
Sbjct: 193 TGSDHAPTFTVEATVTGYEPARAQGRSRQEAEKAAAIALLKREDVI 238


>gi|330444350|ref|YP_004377336.1| ribonuclease III [Chlamydophila pecorum E58]
 gi|328807460|gb|AEB41633.1| ribonuclease III [Chlamydophila pecorum E58]
          Length = 231

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 100/224 (44%), Gaps = 4/224 (1%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIS 56
           M+ +     +E ++ + F    LL  A TH S  +      E  ERLEFLGD +LGL+++
Sbjct: 1   MNPIVNVKEIESKLNFTFTQPQLLVTAFTHPSYRNESPVPIEDSERLEFLGDAVLGLIVT 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F + +EG LS    SLV A  CS  A  L +   + +    R        S QA
Sbjct: 61  EHLFLLFPNLEEGVLSTIRASLVDASACSGYAESLGVCENLLIGKGERLQNQRGKLSSQA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           ++ E+++ A+YLDGG+  A          +         + K  LQ++        P+Y+
Sbjct: 121 NLFEAILGAIYLDGGLSPARQLTVPLLPSKEKLQPLMFGNPKNLLQQFTQKHLRTLPKYQ 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            T     +      V V I      +G+  SK+ AE++AA   L
Sbjct: 181 ATQYVSKEGVMSHHVQVFIHDELWGEGVAHSKKEAEKLAAQHAL 224


>gi|284022406|gb|ADB65770.1| drosha [Marsupenaeus japonicus]
          Length = 400

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 101/226 (44%), Gaps = 14/226 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
             S  E+ IG  F +  LL +A T  S   ++    S +RLEFLGD +L L+ S  L+ +
Sbjct: 141 NLSKFEESIGVHFNHIRLLARAFTDRSIGFNNLTLGSNQRLEFLGDTVLQLVASEYLYKY 200

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG LS+  +SLV+  T + V  +L + ++   S           T  +AD++E+ 
Sbjct: 201 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTAYTMYS----HLKTELKTKDRADLLEAF 256

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA------HAKFGVTPE 174
           + ALY+D G++    F    +          +   D K++LQ+               P 
Sbjct: 257 LGALYIDRGLDYCRAFCQVCFFPRLHQFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPI 316

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           YKV    GP +   +TV V   G   A+    S + AE  AA E L
Sbjct: 317 YKVIECKGPTNTRVYTVAVYFRGRRLAKASGHSIQQAEMNAAREAL 362



 Score = 37.2 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 53/126 (42%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
            EF GD ++  L S  LF+ F S +EG L+    ++V  +  + +A +L L  F+  +  
Sbjct: 2   FEFFGDAVVEFLTSIHLFHLFPSLEEGGLATYRAAIVQNQHLAVLAEKLGLDQFMLYAHG 61

Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                   +    A+  E+L+ A++LD GIE A + +     Q          +      
Sbjct: 62  SDLCHDFELRHAMANCFEALMGAIFLDTGIEDADSVLSSTLFQGEDLLHSIWVNYPPHPI 121

Query: 163 EWAHAK 168
           +    +
Sbjct: 122 QMQEPQ 127


>gi|317049180|ref|YP_004116828.1| ribonuclease III [Pantoea sp. At-9b]
 gi|316950797|gb|ADU70272.1| ribonuclease III [Pantoea sp. At-9b]
          Length = 226

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F +  LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINKLQRKLGYTFTHPELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSNIQNVEKLILDWYQTRLEQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P  G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210


>gi|294011699|ref|YP_003545159.1| ribonuclease III [Sphingobium japonicum UT26S]
 gi|292675029|dbj|BAI96547.1| ribonuclease III [Sphingobium japonicum UT26S]
          Length = 237

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 92/215 (42%), Positives = 126/215 (58%), Gaps = 3/215 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+  IG+A  +R+   +ALTH S    +  +YERLEFLGDRILGLLI+  +++ F    E
Sbjct: 24  LKALIGHAPKDRTAFHQALTHGSA---HAVNYERLEFLGDRILGLLIAEWVYDRFSGEPE 80

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS RFN+LVS ETC++VAR   + + + +    R D  +   ++  DV+E+LI ALYL
Sbjct: 81  GKLSRRFNALVSGETCAEVARGAGVPAHLILGKQARDDGAADSDNVLGDVMEALIGALYL 140

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           +GG+E A T V + W  R        +  K+ LQEWA A     PEY +T RSGP H  +
Sbjct: 141 EGGLEEARTLVRRLWADRVDTQASAPKHPKSALQEWAAANKRKPPEYAMTDRSGPHHALK 200

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           FTV V I G   A     SK+ AE  AA  +L + 
Sbjct: 201 FTVTVSIKGAGEASATGGSKQEAETAAAKALLDKL 235


>gi|329297705|ref|ZP_08255041.1| ribonuclease III [Plautia stali symbiont]
          Length = 226

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 115/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F +  LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINKLQRKLGYTFTHPELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+ S   K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFELGECLRLGSGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSNIQTVEKLILDWYQNRLEQISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P  G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210


>gi|321475336|gb|EFX86299.1| hypothetical protein DAPPUDRAFT_442 [Daphnia pulex]
          Length = 939

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 105/225 (46%), Gaps = 14/225 (6%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             E+ IG  F +  LL +A T  S   ++    S +RLEFLGD +L L+ S  L+  F  
Sbjct: 703 EFEESIGIKFTHIRLLARAFTDRSIGFNNLTLGSNQRLEFLGDTVLQLIASEYLYKFFPE 762

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG LS+  +SLV+  T + V  +L + ++   SS   +      T  +AD++E+ + A
Sbjct: 763 HHEGHLSLLRSSLVNNRTQAVVCDDLGMTNYALYSSPKAELK----TKDRADLLEAFLGA 818

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWA------HAKFGVTPEYKV 177
           LY+D G+E   TF    +  R       +   D K++LQ+               P YKV
Sbjct: 819 LYVDKGLEDCQTFCQVCFFPRLQDFILHQDWNDPKSKLQQCCLTLRTMDGGEPDIPVYKV 878

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               GP +   ++V V   G+  A     S + AE  AA E L++
Sbjct: 879 IECKGPTNTRVYSVAVYFRGIRLASASGHSIQQAEMNAAKEALEK 923



 Score = 51.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE RI Y F NR LL+ ALTH S   ++  +
Sbjct: 469 LDVLEDRIKYRFKNRYLLQLALTHPSYRENFGTN 502



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 54/122 (44%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             ERLEFLGD ++  L S  L++ F   +EG L+    ++V  +  +Q+A+ L L  F+ 
Sbjct: 557 HNERLEFLGDAVVEFLASIHLYHMFPDLEEGGLATYRAAIVQNQHLAQLAKNLQLDQFML 616

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158
            +          +    A+  E+L+ AL+LDGGI VA                    +  
Sbjct: 617 YAHGSDLCHDLELRHAMANCFEALMGALFLDGGINVADRVFSNTLFMNEKDLLDVWVNYP 676

Query: 159 TE 160
           + 
Sbjct: 677 SH 678


>gi|439871|gb|AAA69690.1| ribonuclease [Coxiella burnetii]
          Length = 233

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 115/225 (51%), Gaps = 7/225 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+    + L +R+G+ F N  LL+ ALTH S   S  ++ ERLEFLGD +LG +I++ L+
Sbjct: 1   MN--HLNKLMERLGHQFNNLELLKIALTHCS---SGADNNERLEFLGDSVLGFIIASELY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                A+EG+LS    S+V+ +  +Q++ +L +  ++++    +K       SI AD +E
Sbjct: 56  QRRPQAREGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +++ A+Y+D G+E     V  ++ +R     K   +     L +       +        
Sbjct: 116 TIVGAIYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVK 175

Query: 180 RSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223
            +G  H   FTV   + GL    +G++ ++R AEQ+AA   L+  
Sbjct: 176 ITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLELL 220


>gi|109899454|ref|YP_662709.1| ribonuclease III [Pseudoalteromonas atlantica T6c]
 gi|109701735|gb|ABG41655.1| RNAse III [Pseudoalteromonas atlantica T6c]
          Length = 227

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 7/228 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +  Y  L  ++GY F +   L  ALTH S+        ERLEFLGD +LGL+I+  L
Sbjct: 1   MQLIDPYKPLYTKLGYEFQDPKNLTVALTHRSVG---ANHNERLEFLGDAVLGLVIAKAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F    EG L+   +SLV  +T ++VARE  L   + +     K       SI AD V
Sbjct: 58  FERFPKQPEGNLTRMRSSLVKGDTLAEVAREFSLGDLLLLGPGELKSGGHRRDSILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+Y + G++     +  ++ +R          +D KT LQE+   +    PEY+V
Sbjct: 118 EAIIGAIYQEVGMQGCEPLILAWFAKRIDALNPDATPKDDKTRLQEYLQGRQLPLPEYEV 177

Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224
              SG  HD  FTV   +SGL  P  G   S+R AEQ  A + L+   
Sbjct: 178 IDISGKSHDQTFTVQCTVSGLSKPIIGRGKSRRRAEQRTAKQALENLK 225


>gi|312375831|gb|EFR23111.1| hypothetical protein AND_13526 [Anopheles darlingi]
          Length = 1254

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 86/223 (38%), Gaps = 6/223 (2%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             +  E  IG  F++  LL +A T  S   ++    S +RLEFLGD +L L+ S  L+ HF
Sbjct: 778  LTRFEDSIGVKFSHIRLLARAFTDRSMGFTNLTLGSNQRLEFLGDTVLQLICSEYLYRHF 837

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG LS+  +SLV+  T + V  +L +  +   S+   +        +    + +L 
Sbjct: 838  PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTQYAVYSNPKAELKTKDRADLLEAFLGALY 897

Query: 124  A----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
                               +  +   +     K +                  P YKV  
Sbjct: 898  VDKGLVYCEKFCQVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPLYKVIE 957

Query: 180  RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +GP +   ++V V   G   A     S + AE  AA + L++
Sbjct: 958  CTGPTNTRVYSVAVYFRGKRLACANGHSIQQAEMNAARQALEK 1000



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LEK I Y F NR  L+ ALTH S   ++  +
Sbjct: 545 LDMLEKHIDYRFTNRYTLQLALTHPSYKENFGTN 578



 Score = 44.9 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 49/98 (50%)

Query: 33  SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD 92
           + S     ERLEFLGD ++  + S  LF+ F   +EG L+    ++V  +  + +A++L 
Sbjct: 627 TDSNITHNERLEFLGDAVVEFITSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLH 686

Query: 93  LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L  F+  +          +    A+  E+L+ AL LDG
Sbjct: 687 LEEFMLYAHGSDLCHELELRHALANCFEALMGALLLDG 724


>gi|300780910|ref|ZP_07090764.1| ribonuclease III [Corynebacterium genitalium ATCC 33030]
 gi|300532617|gb|EFK53678.1| ribonuclease III [Corynebacterium genitalium ATCC 33030]
          Length = 252

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 110/218 (50%), Gaps = 5/218 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           + +++L +R+G       LL+ ALTH S ++ +    + ERLEF+GD +LGL I+  LF+
Sbjct: 22  IDHASLLERLGVDVE-PDLLKLALTHRSFANEHGTLPNNERLEFVGDAVLGLTIANELFD 80

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F S  E +LS     +VS    + VAR +DL + + +             SI AD  E+
Sbjct: 81  RFPSRPESDLSPMRARIVSRYGLADVARSIDLGAHVLLGKGEEATGGRKKDSILADTTEA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           ++ A+Y   G +V    + + +  +   +  + +D KTELQE      G  P Y  T   
Sbjct: 141 VLGAIYRQHGFDVTRDVITRLFDDKIENA-HWIQDWKTELQERVAELGGNPPVYTATA-K 198

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GP+H+  FT  V I G+    G   +K+ AEQ +A E 
Sbjct: 199 GPEHEQIFTAEVAIDGVRRGVGRGQNKKTAEQNSAREA 236


>gi|238854774|ref|ZP_04645104.1| ribonuclease III [Lactobacillus jensenii 269-3]
 gi|260664006|ref|ZP_05864859.1| ribonuclease III [Lactobacillus jensenii SJ-7A-US]
 gi|282933852|ref|ZP_06339200.1| ribonuclease III [Lactobacillus jensenii 208-1]
 gi|238832564|gb|EEQ24871.1| ribonuclease III [Lactobacillus jensenii 269-3]
 gi|260561892|gb|EEX27861.1| ribonuclease III [Lactobacillus jensenii SJ-7A-US]
 gi|281301941|gb|EFA94195.1| ribonuclease III [Lactobacillus jensenii 208-1]
          Length = 230

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 10/229 (4%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++   L +  G  F N +LLE+A THSS  + + +    +YE+LEFLGD +L L +
Sbjct: 1   MVSTKFKNYLFEEYGIKFKNETLLEEAFTHSSYVNEHPKESVGNYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ HF S  EG+L+   +++V  E  S  A E    + I +     K       ++ 
Sbjct: 61  SDYLYRHFPSLNEGQLTRLRSNIVRTEGFSGFAIECGFPAEINLGHGEEKTGARERKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            DV E+   AL+LD G++    F+                       +      G     
Sbjct: 121 EDVFEAFNGALFLDQGMDAVQKFLKLTVYPLIDSGEFTDSRDYKTDLQELLQVNGAIKIE 180

Query: 176 KVT--FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                    P +   F V + + G   ++G   +K+AAEQVAA   L +
Sbjct: 181 YQVLEESKLPSN---FKVALLVEGKKISEGSGHNKKAAEQVAAKLALIK 226


>gi|159029006|emb|CAO87467.1| rnc [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/215 (31%), Positives = 103/215 (47%), Gaps = 9/215 (4%)

Query: 17  FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F N  LL +ALTH S  +   E   + ERLEFLGD IL  L+  LL+  + +  E EL+ 
Sbjct: 7   FQNALLLTQALTHRSYVNEQSELTENNERLEFLGDAILAFLVGELLYQKYPAMNEAELTR 66

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             ++LV  E  +Q+  E+ L   +R+     KD      ++ AD  E++I A YLD G+ 
Sbjct: 67  LRSNLVKEEQLAQLGIEIGLGELMRLGKGAIKDRGRSNPTLLADTFEAIIGAYYLDSGLN 126

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTE------LQEWAHAKFGVTPEYKVTFRSGPDHDP 187
               ++   +   A      + ++ +        Q+WA A F   PEY +   +GP H  
Sbjct: 127 AVKNYLHGLFIPVASHLVSQQSESPSFIDAKNLFQQWALANFASNPEYAIIDVTGPPHAR 186

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            FT  V ++ L    G    K+ A + AA + LKR
Sbjct: 187 EFTAEVRVNNLLYGTGKGKRKQDATKAAAEDALKR 221


>gi|16761493|ref|NP_457110.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|22654063|sp|Q8Z4K4|RNC_SALTI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|25289227|pir||AC0829 ribonuclease III (EC 3.1.26.3) [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503793|emb|CAD02783.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 226

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 109/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+        P Y V 
Sbjct: 118 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGHHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|328777204|ref|XP_394444.3| PREDICTED: ribonuclease 3 [Apis mellifera]
          Length = 1290

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  S   ++    S +RLEFLGD +L L++S  L+ +
Sbjct: 1010 KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKY 1069

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T + V  +L +  +    +   +      T  +AD++E+ 
Sbjct: 1070 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK----TKDRADLLEAF 1125

Query: 123  IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA------HAKFGVTPE 174
            + ALY+D G+E    F D  +    +     +   D K++LQ+               P 
Sbjct: 1126 LGALYVDKGLEYCRVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1185

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV    GP +   +TV V   G   A+    S + AE  +A E L++
Sbjct: 1186 YKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEK 1233



 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE+ +GY F NR LL+ ALTH S   ++  +
Sbjct: 779 LDNLERTLGYEFKNRYLLQLALTHPSYRENFGTN 812



 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 58/122 (47%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             ERLEFLGD ++  L S  LF+ F   +EG L+    ++V  +  + +A++L+L  ++ 
Sbjct: 867 HNERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYML 926

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158
            +          +    A+  E+L+ +L+LDGGIEVA     +   +      K   +  
Sbjct: 927 YAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKDEEDLAKVWVNYP 986

Query: 159 TE 160
             
Sbjct: 987 KH 988


>gi|118602619|ref|YP_903834.1| ribonuclease III [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567558|gb|ABL02363.1| RNAse III [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 221

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 6/221 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L+K+I Y F + SLL+ ALTH S+      + ERLEFLGD ILG++IS  L+  F + 
Sbjct: 2   KKLQKKINYQFKDLSLLKLALTHCSMGK---NNNERLEFLGDSILGVIISKELYQRFPNI 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS   + LV  +T +Q++  L+L++ + +     K       SIQAD +E++  A+
Sbjct: 59  DEGKLSRLRSHLVRDQTLTQLSAGLELSNSLILGFGELKSGGYRRESIQADAIEAIFGAV 118

Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            LD   E   T V   ++     +      +D KT+LQE+      V P+Y++T   G D
Sbjct: 119 LLDSNFETTSTVVLDLFEMLLNNISPDDSLKDPKTQLQEYLQKYGNVLPKYELTDTIGKD 178

Query: 185 HDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224
           H+  FT+   +            S + AEQ  A  +LK+  
Sbjct: 179 HNAIFTINCLLKDQNLQVSQSAKSIKKAEQSCAQTLLKKLK 219


>gi|148244713|ref|YP_001219407.1| ribonuclease III [Candidatus Vesicomyosocius okutanii HA]
 gi|146326540|dbj|BAF61683.1| ribonuclease III [Candidatus Vesicomyosocius okutanii HA]
          Length = 221

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 111/221 (50%), Gaps = 6/221 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L+K+I Y F + SLL+ ALTH S   + + + ERLEFLGD ILG+ IS  L+  F   
Sbjct: 2   KKLQKKINYQFKDLSLLKLALTHRS---TGRNNNERLEFLGDSILGVAISKELYQRFPCV 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS   + L+  +T  Q+   L+L++ + + S   K       SIQAD VE++  A+
Sbjct: 59  DEGKLSRLRSHLIRGQTLVQLGTALELSNNLILGSGELKSGGYRRESIQADTVEAIFGAV 118

Query: 127 YLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            LD   E     +         ++      +D+KT+LQE+   +  + P+YK+   +G D
Sbjct: 119 LLDSNFETTNMVILGLFKVLLNSISPDDSLKDSKTQLQEYLQKRGNILPKYKLIDTTGKD 178

Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224
           H+  F V   +       +    S + AEQ  A  +LK+  
Sbjct: 179 HNAIFMVNCFLEDQKLQVKQSAKSIKKAEQFCAQILLKKLK 219


>gi|312864846|ref|ZP_07725077.1| ribonuclease III [Streptococcus downei F0415]
 gi|311099973|gb|EFQ58186.1| ribonuclease III [Streptococcus downei F0415]
          Length = 228

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/212 (33%), Positives = 107/212 (50%), Gaps = 9/212 (4%)

Query: 7   STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             LE+++    G  F ++SLL+ A TH+S ++ ++       ERLEFLGD +L LLIS  
Sbjct: 2   QALEEKLKADFGIVFKDKSLLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLISRY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  F    EG+LS   + +V  E+ +  +++    +FI++     K       +I  D+
Sbjct: 62  LFEKFPKRPEGDLSKMRSMIVREESLAGFSKDCGFEAFIKLGKGEEKTGGRERETILGDL 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ + AL LD GIEV   F+++    +      +  +D KT LQE    K  V   Y+V
Sbjct: 122 FEAFLGALDLDQGIEVVEKFLNQVMIPKVEVGDYEQVKDYKTALQEKLQVKGSVQINYRV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              +GP HD  F VVV   G   + G   SK+
Sbjct: 182 ISETGPAHDKHFEVVVSADGKDLSGGQGKSKK 213


>gi|225873636|ref|YP_002755095.1| ribonuclease III [Acidobacterium capsulatum ATCC 51196]
 gi|225793249|gb|ACO33339.1| ribonuclease III [Acidobacterium capsulatum ATCC 51196]
          Length = 302

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 115/264 (43%), Gaps = 47/264 (17%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ-------------------------ESYE 41
           + LE  +GY F ++ LL +ALTHSS+++                            E  E
Sbjct: 18  AELEAALGYTFQDKGLLARALTHSSLAYEQTAQTATPAAARATGKSSEARTRRSPLEDNE 77

Query: 42  RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
           +LEFLGD +LGL+++  L+       EG+L+   ++LVS +   QVA  L L +++R+  
Sbjct: 78  QLEFLGDAVLGLIVAEALYRAHPEMSEGQLTRLRSALVSRKHMGQVAHRLHLGTYLRMGR 137

Query: 102 DLRKDVCSFMTSIQADVVESL----------------IAALYLDGGIEVAGTFVDKYWKQ 145
              +       ++ A+  E+L                 A       IE            
Sbjct: 138 GEERSGGRKKPALLANAAEALIAAVYLDAAGITGPCETALTAARAIIERHVIEPSLPSLL 197

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL------A 199
           +    G    D K+ LQE+  ++    PEY VT +SGPDH  RF V V + G       A
Sbjct: 198 QEASRGTSIGDHKSALQEFLQSEHRGQPEYVVTGQSGPDHHKRFLVEVRLPGKAGAPGTA 257

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
            A+G+  +K+ AEQ AA   L++ 
Sbjct: 258 LARGIGGTKKHAEQEAARRALRKL 281


>gi|283850854|ref|ZP_06368140.1| ribonuclease III [Desulfovibrio sp. FW1012B]
 gi|283573777|gb|EFC21751.1| ribonuclease III [Desulfovibrio sp. FW1012B]
          Length = 239

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 112/224 (50%), Gaps = 5/224 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62
           ++ +++ +G+AFA   LL  ALTHSS ++   +     ERLEFLGD +L L +S  LF  
Sbjct: 5   FAVVQEALGHAFARPELLTAALTHSSWANERGDALGHNERLEFLGDAVLELCVSEELFVR 64

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A EGEL++  + LV+  + + +AR L L   + +             ++ +D  E++
Sbjct: 65  FPEAPEGELTLLRSQLVNEGSLAAMARRLSLEEHVLLGKGEENQGGRTRPALLSDAFEAV 124

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG   A  F+ + +             +D K+ LQE+        P Y +   
Sbjct: 125 IGAIFLDGGYAAAKGFIIRAFAGSWPMRPAAPKTKDFKSRLQEYTQKAHKSRPVYSLLGS 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GP+HD RF V + +        ++ S + AEQ+AA   L+  G
Sbjct: 185 EGPEHDKRFQVRLTLPDGQVITAVEKSVKKAEQMAALRALEALG 228


>gi|166365898|ref|YP_001658171.1| ribonuclease III [Microcystis aeruginosa NIES-843]
 gi|166088271|dbj|BAG02979.1| ribonuclease III [Microcystis aeruginosa NIES-843]
          Length = 226

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/215 (31%), Positives = 103/215 (47%), Gaps = 9/215 (4%)

Query: 17  FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F N  LL +ALTH S  +   E   + ERLEFLGD IL  L+  LL+  + +  E EL+ 
Sbjct: 7   FQNALLLTQALTHRSYVNEQSELTENNERLEFLGDAILAFLVGELLYQKYPAMNEAELTR 66

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             ++LV  E  +Q+  E+ L   +R+     KD      ++ AD  E++I A YLD G+ 
Sbjct: 67  LRSNLVKEEQLAQLGLEIGLGELMRLGKGAIKDRGRSNPTLLADTFEAIIGAYYLDSGLN 126

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTE------LQEWAHAKFGVTPEYKVTFRSGPDHDP 187
               ++   +   A      + ++ +        Q+WA A F   PEY +   +GP H  
Sbjct: 127 AVKNYLHGLFIPVASHLVSQQSESSSFIDAKNLFQQWALANFASNPEYAIIDVTGPPHAR 186

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            FT  V ++ L    G    K+ A + AA + LKR
Sbjct: 187 EFTAEVRVNNLLYGTGKGKRKQDATKAAAEDALKR 221


>gi|209964796|ref|YP_002297711.1| ribonuclease III [Rhodospirillum centenum SW]
 gi|209958262|gb|ACI98898.1| ribonuclease III [Rhodospirillum centenum SW]
          Length = 236

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 82/207 (39%), Positives = 109/207 (52%), Gaps = 3/207 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            S LE  +GY F +R LL +ALTH S   +  +    YERLEFLGDR+LGL+I+  L   
Sbjct: 11  LSELETGLGYHFRHRDLLVQALTHPSLGGVERNAGRGYERLEFLGDRVLGLVIAEWLLER 70

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F +  EG L+ R  +LV AE  + VA  + L  F+R++   R        +I AD  E++
Sbjct: 71  FPAEAEGALARRHTALVRAEALTVVAETIGLGPFLRLAPSERDSGGQAKPAILADACEAV 130

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I A++ DGG+E A T +   W           +D KT LQEWA  +    P Y+   R G
Sbjct: 131 IGAIFQDGGLEPARTLIRTRWTPLIEADLSPPQDPKTALQEWALGRGRPLPAYETLSREG 190

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDH P F V V + G  PA     SKR
Sbjct: 191 PDHAPVFRVRVRVEGAEPATATGPSKR 217


>gi|308187806|ref|YP_003931937.1| RNase III, ds RNA [Pantoea vagans C9-1]
 gi|308058316|gb|ADO10488.1| RNase III, ds RNA [Pantoea vagans C9-1]
          Length = 226

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F +  LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINKLQRKLGYTFTHSELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  IE            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSSIERVEQLILDWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P  G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210


>gi|310815100|ref|YP_003963064.1| ribonuclease III [Ketogulonicigenium vulgare Y25]
 gi|308753835|gb|ADO41764.1| ribonuclease III [Ketogulonicigenium vulgare Y25]
          Length = 228

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 88/216 (40%), Positives = 121/216 (56%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
                 R+G+ F N  +L +ALTH S S   +   +RLEFLGDR+LGL+++  L      
Sbjct: 7   LMDFADRLGHRFINTEVLMRALTHGSASSPDRSDNQRLEFLGDRVLGLVVAEALLAADKF 66

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EG+++ RFN LV  ETC++VAR +DL + +R+     K       ++ AD +E++IAA
Sbjct: 67  ATEGQIAPRFNRLVRRETCAEVARAMDLGAALRIGRSEMKTGGRKKEAVLADAMEAVIAA 126

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +YLD G + A + V K+W           RDAKT LQEWA  +    P Y    RSGPDH
Sbjct: 127 VYLDAGFDAAKSVVLKHWAAHIANVDDDARDAKTALQEWAQGRGETPPAYIEEARSGPDH 186

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            P FTV V +     A G   SKR AE  AA ++L+
Sbjct: 187 APIFTVRVTLQSGPTATGEAGSKRLAEHAAATKLLQ 222


>gi|144899862|emb|CAM76726.1| ribonuclease III [Magnetospirillum gryphiswaldense MSR-1]
          Length = 229

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 85/217 (39%), Positives = 116/217 (53%), Gaps = 4/217 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M A     L +R+G+ FA   LL +ALTH S++          YERLEFLGDR+LGL+++
Sbjct: 1   MDAGPIHDLCQRLGHEFAQSQLLTQALTHPSVAQGRAPRRNTPYERLEFLGDRVLGLVVA 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +LF+ F +  EG L+ R  +LV  E+ + VA ++ L   + +S            ++ A
Sbjct: 61  DMLFHRFPTEAEGALARRHAALVRRESLAVVAGQIGLPPCLTLSKGEEDAGGRGNPALLA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E++I ALY D G EVA  FV   W      + +  +DAKT LQEWA       P Y 
Sbjct: 121 DACEAVIGALYADAGFEVAARFVRSAWTALMDAAAQPPKDAKTALQEWAQGLGKPLPVYT 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           V  + GP HDP F V V + G+ P  G   SKR AEQ
Sbjct: 181 VVGQDGPPHDPTFVVSVTVEGVDPVHGTGASKRVAEQ 217


>gi|195119378|ref|XP_002004208.1| GI19789 [Drosophila mojavensis]
 gi|193909276|gb|EDW08143.1| GI19789 [Drosophila mojavensis]
          Length = 1297

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 81/224 (36%), Gaps = 6/224 (2%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ H
Sbjct: 934  DLTRFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 993

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L +  F   ++            +    + +L
Sbjct: 994  FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKFAVYANPKADLKTKDRADLLEAFLGAL 1053

Query: 123  IA----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
                                +  +   +     K +                  P YKV 
Sbjct: 1054 YVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVV 1113

Query: 179  FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1114 EASGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALEN 1157



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE+ IGY F NR LL+ ALTH S   +Y  +
Sbjct: 703 LDLLEESIGYKFKNRYLLQLALTHPSYKENYGTN 736



 Score = 43.0 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%)

Query: 36  YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95
                ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A++L L  
Sbjct: 788 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 847

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           F+  +          +    A+  E+L+ AL LDGGI+
Sbjct: 848 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 885


>gi|150021479|ref|YP_001306833.1| ribonuclease III [Thermosipho melanesiensis BI429]
 gi|149794000|gb|ABR31448.1| Ribonuclease III [Thermosipho melanesiensis BI429]
          Length = 231

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 10/229 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLL 59
           M   R   +E  IGY F N+ LL  ALTH+S ++  ++ SYERLEFLGD ++ +L+ T+L
Sbjct: 1   MERFREGEIEHVIGYRFRNKELLFTALTHTSYANENKKQSYERLEFLGDSVIDILVCTIL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EG ++   +++ S +   ++A++ +L  +I +    R+   S   SI ADVV
Sbjct: 61  YEQYQTLNEGTMAQIKSAVTSEDILFEIAKKFNLGKYILLGKGERRSRGSEKKSILADVV 120

Query: 120 ESLIAALYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           ESLIAA+YLD                        +GK   D KT+LQE    KF   P Y
Sbjct: 121 ESLIAAIYLDSNKNLKLIENLFSKIFKDYIDIFLTGKRIFDYKTKLQELTQDKFKQLPVY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           + T   G      F   ++I+    ++    SK+ AE++AA    ++  
Sbjct: 181 ETTTVGGK-----FITTLKINNKIYSKAKGSSKKDAEKLAAKIAYEKLK 224


>gi|304392070|ref|ZP_07374012.1| ribonuclease III [Ahrensia sp. R2A130]
 gi|303296299|gb|EFL90657.1| ribonuclease III [Ahrensia sp. R2A130]
          Length = 244

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 100/206 (48%), Positives = 139/206 (67%), Gaps = 2/206 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNH 62
           R + LE+ IGY FA+   L++ALTH+S +    ++  YERLEFLGDR+LG+ I+ +LF  
Sbjct: 9   RIAELEELIGYTFASHDRLKRALTHASATRKPGDNSHYERLEFLGDRVLGVCIAEMLFET 68

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F +A EGELSVR N+LVS +TC+ +A E+ L +FI   +D++      M S++ADVVES+
Sbjct: 69  FPTAPEGELSVRLNALVSGKTCAAIADEIGLHAFITTGNDVKHVTGKRMRSVRADVVESV 128

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLDGG+E A  F+ +YW  R  ++G   RD+KT LQEWAH   G TP Y +  ++G
Sbjct: 129 IAAIYLDGGLEPARDFITRYWAGRLHETGAGIRDSKTALQEWAHTHSGETPVYTLVEKTG 188

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSK 208
           PDHDP F + V I G++   G   SK
Sbjct: 189 PDHDPLFKISVAIHGVSGGNGAGRSK 214


>gi|304398620|ref|ZP_07380492.1| ribonuclease III [Pantoea sp. aB]
 gi|304353831|gb|EFM18206.1| ribonuclease III [Pantoea sp. aB]
          Length = 226

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 115/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F +  LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINKLQRKLGYTFTHSELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD GIE     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSGIERVEQLILDWYQSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P  G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210


>gi|297559194|ref|YP_003678168.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296843642|gb|ADH65662.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 248

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 103/221 (46%), Gaps = 4/221 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
               + IG    +  +L +ALTH S ++      + ERLEFLGD +LGL+++  LF    
Sbjct: 11  KAFHQAIGVEV-DPKILLRALTHRSYAYEKGGLPTNERLEFLGDSVLGLVVTDTLFRKHP 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    ++V+    + VAR L + ++IR+            +SI AD +E++I 
Sbjct: 70  DLPEGQLAKLRAAVVNMRALADVARGLGVGAYIRLGRGEEGTGGRDKSSILADTLEAVIG 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A+YLD G++VA  FV + +    A  SG           +   A   +         SGP
Sbjct: 130 AVYLDRGLDVASEFVHRLFDPLIATASGLGAGLDWKTSLQELTAAEMLGVPEYHVDESGP 189

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH   F   V ++G +   G   SK+ AEQ AA    K   
Sbjct: 190 DHQKTFRATVRVAGESYGLGEGRSKKEAEQQAAESAWKAIK 230


>gi|220904300|ref|YP_002479612.1| ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219868599|gb|ACL48934.1| Ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 243

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 6/225 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNH 62
              ++K++G+ F  + LLE ALTHSS ++     QE  ER EFLGD +L L +S  L+  
Sbjct: 16  LELVKKQLGHGFIRKDLLELALTHSSWANECGPGQEHNERQEFLGDAVLELCVSWELYRR 75

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F SA+EGEL+   +SLVSA + ++ AR++ L   +++             ++ +D +E++
Sbjct: 76  FPSAREGELTKMRSSLVSAVSLAERARDMGLDRLLKLGRGEESQGGRKRDAVLSDALEAV 135

Query: 123 IAALYLDGGI---EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +AA+Y DGG    + A   +           GK  +D KT LQE +  +FG  P Y    
Sbjct: 136 LAAIYEDGGFAAAQEAVGRIFADQWPSRAGDGKASKDYKTRLQEASQQRFGQAPLYTRVG 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GP+H   F V + +   +       S + AEQ AA   L+  G
Sbjct: 196 SHGPEHSKVFEVALRLPDGSEFSASGSSCKKAEQQAARIALETLG 240


>gi|295105981|emb|CBL03524.1| RNAse III [Gordonibacter pamelaeae 7-10-1-b]
          Length = 281

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 105/222 (47%), Gaps = 2/222 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
           + +  ++ + Y F +  LL  A+TH S +     + SYERLEFLGD ILG +++ + F+ 
Sbjct: 10  KLARAQEILDYRFDSEHLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVAAIAFHR 69

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+    +LVS  + S VA  L  A  I   S         + S   +V E++
Sbjct: 70  FHDLDEGGLTRIKVALVSGASLSDVADRLGFADVIVFGSSETGTGKRGLHSALENVYEAV 129

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +AALYLDGGI  A  FV++    R         +      +    + G+TP YK+    G
Sbjct: 130 VAALYLDGGIGAAQEFVERTLIPRMSLDMAREPENPKSALQEKLQEDGITPTYKLVETQG 189

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           P HD  F   V       A+G   +K+ AE  AA   L R G
Sbjct: 190 PPHDRTFVAQVFAGTQGLARGTGRTKKEAESQAAKSTLARLG 231


>gi|113475790|ref|YP_721851.1| RNAse III [Trichodesmium erythraeum IMS101]
 gi|110166838|gb|ABG51378.1| RNAse III [Trichodesmium erythraeum IMS101]
          Length = 233

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 16/227 (7%)

Query: 16  AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHF---DSAKEG 69
            F N+ LL++ALTH S  +     +E  E LEF+GD +LG L+  LL+  +    + K  
Sbjct: 7   EFKNQKLLQQALTHRSYLNENYGDEEDNESLEFIGDALLGFLVGELLYRRYKEEHNLKPK 66

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           EL+   + LV  +  ++ A +L + + +R+     KD      ++ +D  E++I A +LD
Sbjct: 67  ELTRIRSLLVDEKQLAKFAVQLGIGAKMRLGKGAEKDGGRKNPALLSDTFEAIIGAYFLD 126

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTE----------LQEWAHAKFGVTPEYKVTF 179
             +     F+ + ++  A           ++           Q+WA AKFG  P Y+   
Sbjct: 127 SNLTKVKPFIKRLFEPVADNIILPNYGDNSQPKDLVDTKGKFQQWALAKFGENPRYESNN 186

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
             G DH   FT  V + G     G    K+ AE+ AA + LK+ G+ 
Sbjct: 187 GEGLDHAKIFTAEVRVRGKLYGVGKGNRKQEAEKSAAEKALKKVGLI 233


>gi|213161855|ref|ZP_03347565.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
          Length = 231

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 6   MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 63  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 122

Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 123 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 182

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 183 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 215


>gi|167549387|ref|ZP_02343146.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167992712|ref|ZP_02573808.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168232159|ref|ZP_02657217.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168238326|ref|ZP_02663384.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168245106|ref|ZP_02670038.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168261368|ref|ZP_02683341.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168466658|ref|ZP_02700512.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168821429|ref|ZP_02833429.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194443007|ref|YP_002041844.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194450415|ref|YP_002046643.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194472117|ref|ZP_03078101.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194733998|ref|YP_002115644.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197247832|ref|YP_002147539.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197262390|ref|ZP_03162464.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|198245284|ref|YP_002216648.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200387478|ref|ZP_03214090.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204929592|ref|ZP_03220666.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|213425276|ref|ZP_03358026.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213585348|ref|ZP_03367174.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
 gi|213613049|ref|ZP_03370875.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|213646353|ref|ZP_03376406.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|213859103|ref|ZP_03385074.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|238912699|ref|ZP_04656536.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289825501|ref|ZP_06544708.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|194401670|gb|ACF61892.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194408719|gb|ACF68938.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194458481|gb|EDX47320.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194709500|gb|ACF88721.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195630694|gb|EDX49286.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197211535|gb|ACH48932.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197240645|gb|EDY23265.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197288832|gb|EDY28205.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197939800|gb|ACH77133.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199604576|gb|EDZ03121.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204321311|gb|EDZ06511.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205325334|gb|EDZ13173.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205329152|gb|EDZ15916.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205333647|gb|EDZ20411.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205336135|gb|EDZ22899.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205341915|gb|EDZ28679.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205349444|gb|EDZ36075.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|312913570|dbj|BAJ37544.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320087082|emb|CBY96851.1| RNase III, ds RNA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321222714|gb|EFX47785.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322613351|gb|EFY10293.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620445|gb|EFY17310.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625087|gb|EFY21916.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322629469|gb|EFY26245.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322633856|gb|EFY30595.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635462|gb|EFY32173.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322639862|gb|EFY36541.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644252|gb|EFY40796.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649944|gb|EFY46364.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654873|gb|EFY51190.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658199|gb|EFY54465.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322661729|gb|EFY57947.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669710|gb|EFY65856.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673283|gb|EFY69388.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322674928|gb|EFY71015.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322682951|gb|EFY78969.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685612|gb|EFY81607.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323130912|gb|ADX18342.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323191960|gb|EFZ77198.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200407|gb|EFZ85488.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201307|gb|EFZ86374.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208377|gb|EFZ93317.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211547|gb|EFZ96385.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323215979|gb|EGA00711.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221760|gb|EGA06168.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225632|gb|EGA09859.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229350|gb|EGA13474.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235335|gb|EGA19419.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237479|gb|EGA21542.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245234|gb|EGA29235.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248808|gb|EGA32735.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323254012|gb|EGA37833.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323259060|gb|EGA42708.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323261983|gb|EGA45548.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323267766|gb|EGA51247.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323269675|gb|EGA53127.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326624403|gb|EGE30748.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326628781|gb|EGE35124.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 245

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 20  MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 77  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 136

Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 197 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 229


>gi|152981163|ref|YP_001353060.1| ribonuclease III [Janthinobacterium sp. Marseille]
 gi|151281240|gb|ABR89650.1| ribonuclease III [Janthinobacterium sp. Marseille]
          Length = 322

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 111/221 (50%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  + L+ R+G+ F +  LL++ALTH S         ERLEFLGD IL  ++++LLF+ +
Sbjct: 1   MDLTLLQNRLGHTFKDAVLLQQALTHRS---HGSVHNERLEFLGDSILNCVVASLLFDRY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+L+ F+R+     K       SI AD +E+L 
Sbjct: 58  SKIDEGDLSRLRANLVKQQSLYEIAQRLELSHFLRLGEGELKSGGFRRPSILADTLEALF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   +   +             +DAKT LQE+   K    P+Y V    
Sbjct: 118 GAIFLDAGFDTARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  H+  F +   +  L     G   S+RA EQ AA   L+
Sbjct: 178 GAAHNQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALE 218


>gi|16765901|ref|NP_461516.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29140810|ref|NP_804152.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56412543|ref|YP_149618.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361478|ref|YP_002141114.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205353677|ref|YP_002227478.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207857988|ref|YP_002244639.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|20141650|sp|Q56056|RNC_SALTY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81360707|sp|Q5PIG5|RNC_SALPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741376|sp|B5QTU8|RNC_SALEP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741377|sp|B5RD49|RNC_SALG2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238689916|sp|B5BAT0|RNC_SALPK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|16421128|gb|AAL21475.1| RNase III, ds RNA [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29136435|gb|AAO68001.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56126800|gb|AAV76306.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197092954|emb|CAR58384.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205273458|emb|CAR38435.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206709791|emb|CAR34143.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|261247776|emb|CBG25604.1| RNase III [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267994707|gb|ACY89592.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159129|emb|CBW18643.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|332989508|gb|AEF08491.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 226

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|32129971|sp|Q9PB98|RNC_XYLFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 227

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M + + S  ++RIGY F + SLL +AL H S         ERLEFLGD ++ LLI+  LF
Sbjct: 1   MISSKASDYQQRIGYVFTDPSLLLQALRHCSAG---TPHNERLEFLGDSVVNLLIAEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +  A EG L+   + LV   + + +AR + L   + +     K       SI AD VE
Sbjct: 58  QRWPRADEGALTRARSELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD  +    T V  +++    AL  GK  +D KT LQEW  A+    P Y++ 
Sbjct: 118 AVIAAIYLDADLATCRTVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELI 177

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
           F SG  H   F V   +  L    +G   S+R AEQ AA+  + + 
Sbjct: 178 FESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAASHAIDQL 223


>gi|15803093|ref|NP_289124.1| ribonuclease III [Escherichia coli O157:H7 EDL933]
 gi|15832687|ref|NP_311460.1| ribonuclease III [Escherichia coli O157:H7 str. Sakai]
 gi|16130492|ref|NP_417062.1| RNase III [Escherichia coli str. K-12 substr. MG1655]
 gi|24113909|ref|NP_708419.1| ribonuclease III [Shigella flexneri 2a str. 301]
 gi|26248932|ref|NP_754972.1| ribonuclease III [Escherichia coli CFT073]
 gi|30063969|ref|NP_838140.1| ribonuclease III [Shigella flexneri 2a str. 2457T]
 gi|74313129|ref|YP_311548.1| ribonuclease III [Shigella sonnei Ss046]
 gi|82545019|ref|YP_408966.1| ribonuclease III [Shigella boydii Sb227]
 gi|82777993|ref|YP_404342.1| ribonuclease III [Shigella dysenteriae Sd197]
 gi|89109373|ref|AP_003153.1| RNase III [Escherichia coli str. K-12 substr. W3110]
 gi|91211893|ref|YP_541879.1| ribonuclease III [Escherichia coli UTI89]
 gi|110642729|ref|YP_670459.1| ribonuclease III [Escherichia coli 536]
 gi|110806512|ref|YP_690032.1| ribonuclease III [Shigella flexneri 5 str. 8401]
 gi|117624788|ref|YP_853701.1| ribonuclease III [Escherichia coli APEC O1]
 gi|157157389|ref|YP_001463890.1| ribonuclease III [Escherichia coli E24377A]
 gi|157162046|ref|YP_001459364.1| ribonuclease III [Escherichia coli HS]
 gi|168748363|ref|ZP_02773385.1| ribonuclease III [Escherichia coli O157:H7 str. EC4113]
 gi|168761188|ref|ZP_02786195.1| ribonuclease III [Escherichia coli O157:H7 str. EC4501]
 gi|168778544|ref|ZP_02803551.1| ribonuclease III [Escherichia coli O157:H7 str. EC4076]
 gi|168787927|ref|ZP_02812934.1| ribonuclease III [Escherichia coli O157:H7 str. EC869]
 gi|170019150|ref|YP_001724104.1| ribonuclease III [Escherichia coli ATCC 8739]
 gi|170082176|ref|YP_001731496.1| RNase III [Escherichia coli str. K-12 substr. DH10B]
 gi|170680897|ref|YP_001744756.1| ribonuclease III [Escherichia coli SMS-3-5]
 gi|170767161|ref|ZP_02901614.1| ribonuclease III [Escherichia albertii TW07627]
 gi|187732795|ref|YP_001881346.1| ribonuclease III [Shigella boydii CDC 3083-94]
 gi|187775820|ref|ZP_02992726.1| ribonuclease III [Escherichia coli O157:H7 str. EC4196]
 gi|188492722|ref|ZP_02999992.1| ribonuclease III [Escherichia coli 53638]
 gi|189402493|ref|ZP_03006738.1| ribonuclease III [Escherichia coli O157:H7 str. EC4401]
 gi|189403151|ref|ZP_03006973.1| ribonuclease III [Escherichia coli O157:H7 str. EC4486]
 gi|189405744|ref|ZP_02823956.2| ribonuclease III [Escherichia coli O157:H7 str. EC508]
 gi|191167987|ref|ZP_03029789.1| ribonuclease III [Escherichia coli B7A]
 gi|191174016|ref|ZP_03035533.1| ribonuclease III [Escherichia coli F11]
 gi|193064102|ref|ZP_03045187.1| ribonuclease III [Escherichia coli E22]
 gi|193068346|ref|ZP_03049309.1| ribonuclease III [Escherichia coli E110019]
 gi|194429263|ref|ZP_03061790.1| ribonuclease III [Escherichia coli B171]
 gi|194432095|ref|ZP_03064384.1| ribonuclease III [Shigella dysenteriae 1012]
 gi|194437570|ref|ZP_03069666.1| ribonuclease III [Escherichia coli 101-1]
 gi|195936714|ref|ZP_03082096.1| ribonuclease III [Escherichia coli O157:H7 str. EC4024]
 gi|208807620|ref|ZP_03249957.1| ribonuclease III [Escherichia coli O157:H7 str. EC4206]
 gi|208811958|ref|ZP_03253287.1| ribonuclease III [Escherichia coli O157:H7 str. EC4045]
 gi|208820348|ref|ZP_03260668.1| ribonuclease III [Escherichia coli O157:H7 str. EC4042]
 gi|209400787|ref|YP_002272042.1| ribonuclease III [Escherichia coli O157:H7 str. EC4115]
 gi|209920046|ref|YP_002294130.1| ribonuclease III [Escherichia coli SE11]
 gi|215487911|ref|YP_002330342.1| ribonuclease III [Escherichia coli O127:H6 str. E2348/69]
 gi|217327524|ref|ZP_03443607.1| ribonuclease III [Escherichia coli O157:H7 str. TW14588]
 gi|218547905|ref|YP_002381696.1| ribonuclease III [Escherichia fergusonii ATCC 35469]
 gi|218555148|ref|YP_002388061.1| ribonuclease III [Escherichia coli IAI1]
 gi|218559488|ref|YP_002392401.1| ribonuclease III [Escherichia coli S88]
 gi|218690683|ref|YP_002398895.1| ribonuclease III [Escherichia coli ED1a]
 gi|218696195|ref|YP_002403862.1| ribonuclease III [Escherichia coli 55989]
 gi|218701081|ref|YP_002408710.1| ribonuclease III [Escherichia coli IAI39]
 gi|218706071|ref|YP_002413590.1| ribonuclease III [Escherichia coli UMN026]
 gi|237705077|ref|ZP_04535558.1| ribonuclease III [Escherichia sp. 3_2_53FAA]
 gi|238901732|ref|YP_002927528.1| RNase III [Escherichia coli BW2952]
 gi|253772534|ref|YP_003035365.1| ribonuclease III [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162542|ref|YP_003045650.1| ribonuclease III [Escherichia coli B str. REL606]
 gi|254794517|ref|YP_003079354.1| ribonuclease III [Escherichia coli O157:H7 str. TW14359]
 gi|256017284|ref|ZP_05431149.1| ribonuclease III [Shigella sp. D9]
 gi|256021747|ref|ZP_05435612.1| ribonuclease III [Escherichia sp. 4_1_40B]
 gi|260845252|ref|YP_003223030.1| RNase III [Escherichia coli O103:H2 str. 12009]
 gi|260856661|ref|YP_003230552.1| RNase III [Escherichia coli O26:H11 str. 11368]
 gi|260869254|ref|YP_003235656.1| RNase III [Escherichia coli O111:H- str. 11128]
 gi|261222997|ref|ZP_05937278.1| RNase III [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259452|ref|ZP_05951985.1| RNase III [Escherichia coli O157:H7 str. FRIK966]
 gi|291283842|ref|YP_003500660.1| Ribonuclease 3 [Escherichia coli O55:H7 str. CB9615]
 gi|297516306|ref|ZP_06934692.1| ribonuclease III [Escherichia coli OP50]
 gi|307139203|ref|ZP_07498559.1| ribonuclease III [Escherichia coli H736]
 gi|307313862|ref|ZP_07593478.1| ribonuclease III [Escherichia coli W]
 gi|309784618|ref|ZP_07679253.1| ribonuclease III [Shigella dysenteriae 1617]
 gi|312965483|ref|ZP_07779715.1| ribonuclease III [Escherichia coli 2362-75]
 gi|312973187|ref|ZP_07787359.1| ribonuclease III [Escherichia coli 1827-70]
 gi|331643191|ref|ZP_08344326.1| ribonuclease III [Escherichia coli H736]
 gi|331648313|ref|ZP_08349402.1| ribonuclease III [Escherichia coli M605]
 gi|331654029|ref|ZP_08355030.1| ribonuclease III [Escherichia coli M718]
 gi|331658711|ref|ZP_08359655.1| ribonuclease III [Escherichia coli TA206]
 gi|331664135|ref|ZP_08365045.1| ribonuclease III [Escherichia coli TA143]
 gi|331669317|ref|ZP_08370165.1| ribonuclease III [Escherichia coli TA271]
 gi|331674016|ref|ZP_08374779.1| ribonuclease III [Escherichia coli TA280]
 gi|331678563|ref|ZP_08379238.1| ribonuclease III [Escherichia coli H591]
 gi|331684217|ref|ZP_08384813.1| ribonuclease III [Escherichia coli H299]
 gi|332278275|ref|ZP_08390688.1| ribonuclease III [Shigella sp. D9]
 gi|67472282|sp|P0A7Y0|RNC_ECOLI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|67472283|sp|P0A7Y1|RNC_ECOL6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|67472284|sp|P0A7Y2|RNC_ECO57 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|67472285|sp|P0A7Y3|RNC_SHIFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101643|sp|Q31XS0|RNC_SHIBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101644|sp|Q32CV4|RNC_SHIDS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101645|sp|Q3YYU9|RNC_SHISS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122422869|sp|Q1R8G6|RNC_ECOUT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122958122|sp|Q0TES1|RNC_ECOL5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|123048003|sp|Q0T1T8|RNC_SHIF8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043309|sp|A7ZQ11|RNC_ECO24 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043310|sp|A8A377|RNC_ECOHS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043311|sp|A1AE97|RNC_ECOK1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043312|sp|B1IVR0|RNC_ECOLC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735371|sp|B7MIQ2|RNC_ECO45 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735372|sp|B7NRM0|RNC_ECO7I RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735373|sp|B7M8I0|RNC_ECO8A RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735374|sp|B7N6F5|RNC_ECOLU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735375|sp|B1LP80|RNC_ECOSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735376|sp|B7LUZ7|RNC_ESCF3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741369|sp|B5Z141|RNC_ECO5E RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741370|sp|B6I5E1|RNC_ECOSE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|229564359|sp|B1XB41|RNC_ECODH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238691723|sp|B2TXY0|RNC_SHIB3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807247|sp|B7UH07|RNC_ECO27 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807248|sp|B7LDG0|RNC_ECO55 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807249|sp|B7MYJ8|RNC_ECO81 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|259491899|sp|C4ZYJ0|RNC_ECOBW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|12516984|gb|AAG57682.1|AE005487_6 RNase III, ds RNA [Escherichia coli O157:H7 str. EDL933]
 gi|26109338|gb|AAN81540.1|AE016764_222 Ribonuclease III [Escherichia coli CFT073]
 gi|42769|emb|CAA26692.1| unnamed protein product [Escherichia coli]
 gi|987642|dbj|BAA10914.1| ribonuclease III [Escherichia coli K-12]
 gi|1033156|gb|AAA79829.1| RNase III [Escherichia coli str. K-12 substr. MG1655]
 gi|1788920|gb|AAC75620.1| RNase III [Escherichia coli str. K-12 substr. MG1655]
 gi|13362904|dbj|BAB36856.1| RNase III [Escherichia coli O157:H7 str. Sakai]
 gi|24053010|gb|AAN44126.1| RNase III [Shigella flexneri 2a str. 301]
 gi|30042225|gb|AAP17950.1| RNase III [Shigella flexneri 2a str. 2457T]
 gi|73856606|gb|AAZ89313.1| RNase III [Shigella sonnei Ss046]
 gi|81242141|gb|ABB62851.1| RNase III, ds RNA [Shigella dysenteriae Sd197]
 gi|81246430|gb|ABB67138.1| RNase III [Shigella boydii Sb227]
 gi|85675458|dbj|BAE76743.1| RNase III [Escherichia coli str. K12 substr. W3110]
 gi|91073467|gb|ABE08348.1| RNase III, ds RNA [Escherichia coli UTI89]
 gi|110344321|gb|ABG70558.1| ribonuclease III [Escherichia coli 536]
 gi|110616060|gb|ABF04727.1| RNase III, ds RNA [Shigella flexneri 5 str. 8401]
 gi|115513912|gb|ABJ01987.1| RNase III [Escherichia coli APEC O1]
 gi|157067726|gb|ABV06981.1| ribonuclease III [Escherichia coli HS]
 gi|157079419|gb|ABV19127.1| ribonuclease III [Escherichia coli E24377A]
 gi|169754078|gb|ACA76777.1| Ribonuclease III [Escherichia coli ATCC 8739]
 gi|169890011|gb|ACB03718.1| RNase III [Escherichia coli str. K-12 substr. DH10B]
 gi|170123495|gb|EDS92426.1| ribonuclease III [Escherichia albertii TW07627]
 gi|170518615|gb|ACB16793.1| ribonuclease III [Escherichia coli SMS-3-5]
 gi|187429787|gb|ACD09061.1| ribonuclease III [Shigella boydii CDC 3083-94]
 gi|187770609|gb|EDU34453.1| ribonuclease III [Escherichia coli O157:H7 str. EC4196]
 gi|188017132|gb|EDU55254.1| ribonuclease III [Escherichia coli O157:H7 str. EC4113]
 gi|188487921|gb|EDU63024.1| ribonuclease III [Escherichia coli 53638]
 gi|189003491|gb|EDU72477.1| ribonuclease III [Escherichia coli O157:H7 str. EC4076]
 gi|189355317|gb|EDU73736.1| ribonuclease III [Escherichia coli O157:H7 str. EC4401]
 gi|189362280|gb|EDU80699.1| ribonuclease III [Escherichia coli O157:H7 str. EC4486]
 gi|189368381|gb|EDU86797.1| ribonuclease III [Escherichia coli O157:H7 str. EC4501]
 gi|189372250|gb|EDU90666.1| ribonuclease III [Escherichia coli O157:H7 str. EC869]
 gi|189378654|gb|EDU97070.1| ribonuclease III [Escherichia coli O157:H7 str. EC508]
 gi|190901994|gb|EDV61741.1| ribonuclease III [Escherichia coli B7A]
 gi|190905707|gb|EDV65329.1| ribonuclease III [Escherichia coli F11]
 gi|192929337|gb|EDV82946.1| ribonuclease III [Escherichia coli E22]
 gi|192958298|gb|EDV88738.1| ribonuclease III [Escherichia coli E110019]
 gi|194412671|gb|EDX28966.1| ribonuclease III [Escherichia coli B171]
 gi|194419624|gb|EDX35704.1| ribonuclease III [Shigella dysenteriae 1012]
 gi|194423376|gb|EDX39367.1| ribonuclease III [Escherichia coli 101-1]
 gi|208727421|gb|EDZ77022.1| ribonuclease III [Escherichia coli O157:H7 str. EC4206]
 gi|208733235|gb|EDZ81922.1| ribonuclease III [Escherichia coli O157:H7 str. EC4045]
 gi|208740471|gb|EDZ88153.1| ribonuclease III [Escherichia coli O157:H7 str. EC4042]
 gi|209162187|gb|ACI39620.1| ribonuclease III [Escherichia coli O157:H7 str. EC4115]
 gi|209762878|gb|ACI79751.1| RNase III [Escherichia coli]
 gi|209762880|gb|ACI79752.1| RNase III [Escherichia coli]
 gi|209762882|gb|ACI79753.1| RNase III [Escherichia coli]
 gi|209762884|gb|ACI79754.1| RNase III [Escherichia coli]
 gi|209762886|gb|ACI79755.1| RNase III [Escherichia coli]
 gi|209913305|dbj|BAG78379.1| ribonuclease III [Escherichia coli SE11]
 gi|215265983|emb|CAS10392.1| RNase III [Escherichia coli O127:H6 str. E2348/69]
 gi|217319891|gb|EEC28316.1| ribonuclease III [Escherichia coli O157:H7 str. TW14588]
 gi|218352927|emb|CAU98726.1| RNase III [Escherichia coli 55989]
 gi|218355446|emb|CAQ88055.1| RNase III [Escherichia fergusonii ATCC 35469]
 gi|218361916|emb|CAQ99516.1| RNase III [Escherichia coli IAI1]
 gi|218366257|emb|CAR04004.1| RNase III [Escherichia coli S88]
 gi|218371067|emb|CAR18894.1| RNase III [Escherichia coli IAI39]
 gi|218428247|emb|CAR09164.2| RNase III [Escherichia coli ED1a]
 gi|218433168|emb|CAR14064.1| RNase III [Escherichia coli UMN026]
 gi|222034272|emb|CAP77013.1| ribonuclease 3 [Escherichia coli LF82]
 gi|226901443|gb|EEH87702.1| ribonuclease III [Escherichia sp. 3_2_53FAA]
 gi|238863504|gb|ACR65502.1| RNase III [Escherichia coli BW2952]
 gi|242378168|emb|CAQ32942.1| RNase III [Escherichia coli BL21(DE3)]
 gi|253323578|gb|ACT28180.1| ribonuclease III [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974443|gb|ACT40114.1| ribonuclease III [Escherichia coli B str. REL606]
 gi|253978610|gb|ACT44280.1| ribonuclease III [Escherichia coli BL21(DE3)]
 gi|254593917|gb|ACT73278.1| RNase III [Escherichia coli O157:H7 str. TW14359]
 gi|257755310|dbj|BAI26812.1| RNase III [Escherichia coli O26:H11 str. 11368]
 gi|257760399|dbj|BAI31896.1| RNase III [Escherichia coli O103:H2 str. 12009]
 gi|257765610|dbj|BAI37105.1| RNase III [Escherichia coli O111:H- str. 11128]
 gi|260448353|gb|ACX38775.1| Ribonuclease III [Escherichia coli DH1]
 gi|281179616|dbj|BAI55946.1| ribonuclease III [Escherichia coli SE15]
 gi|281601980|gb|ADA74964.1| Ribonuclease 3 [Shigella flexneri 2002017]
 gi|284922517|emb|CBG35604.1| Ribonuclease III [Escherichia coli 042]
 gi|290763715|gb|ADD57676.1| Ribonuclease 3 [Escherichia coli O55:H7 str. CB9615]
 gi|294490667|gb|ADE89423.1| ribonuclease III [Escherichia coli IHE3034]
 gi|306906363|gb|EFN36878.1| ribonuclease III [Escherichia coli W]
 gi|307554586|gb|ADN47361.1| ribonuclease III [Escherichia coli ABU 83972]
 gi|307625885|gb|ADN70189.1| ribonuclease III [Escherichia coli UM146]
 gi|308927515|gb|EFP72987.1| ribonuclease III [Shigella dysenteriae 1617]
 gi|309702953|emb|CBJ02284.1| Ribonuclease III [Escherichia coli ETEC H10407]
 gi|310331782|gb|EFP99017.1| ribonuclease III [Escherichia coli 1827-70]
 gi|312289903|gb|EFR17791.1| ribonuclease III [Escherichia coli 2362-75]
 gi|312947138|gb|ADR27965.1| ribonuclease III [Escherichia coli O83:H1 str. NRG 857C]
 gi|315061886|gb|ADT76213.1| RNase III [Escherichia coli W]
 gi|315137191|dbj|BAJ44350.1| RNase III [Escherichia coli DH1]
 gi|315615829|gb|EFU96461.1| ribonuclease III [Escherichia coli 3431]
 gi|320182108|gb|EFW57012.1| Ribonuclease III [Shigella boydii ATCC 9905]
 gi|320186366|gb|EFW61100.1| Ribonuclease III [Shigella flexneri CDC 796-83]
 gi|320188908|gb|EFW63567.1| Ribonuclease III [Escherichia coli O157:H7 str. EC1212]
 gi|320196403|gb|EFW71027.1| Ribonuclease III [Escherichia coli WV_060327]
 gi|320200131|gb|EFW74720.1| Ribonuclease III [Escherichia coli EC4100B]
 gi|320640816|gb|EFX10310.1| ribonuclease III [Escherichia coli O157:H7 str. G5101]
 gi|320646162|gb|EFX15102.1| ribonuclease III [Escherichia coli O157:H- str. 493-89]
 gi|320651457|gb|EFX19853.1| ribonuclease III [Escherichia coli O157:H- str. H 2687]
 gi|320657058|gb|EFX24877.1| ribonuclease III [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320667543|gb|EFX34463.1| ribonuclease III [Escherichia coli O157:H7 str. LSU-61]
 gi|323159224|gb|EFZ45214.1| ribonuclease III [Escherichia coli E128010]
 gi|323167799|gb|EFZ53494.1| ribonuclease III [Shigella sonnei 53G]
 gi|323184553|gb|EFZ69927.1| ribonuclease III [Escherichia coli 1357]
 gi|323188318|gb|EFZ73610.1| ribonuclease III [Escherichia coli RN587/1]
 gi|323377533|gb|ADX49801.1| ribonuclease III [Escherichia coli KO11]
 gi|323936307|gb|EGB32598.1| ribonuclease III [Escherichia coli E1520]
 gi|323941170|gb|EGB37355.1| ribonuclease III [Escherichia coli E482]
 gi|323944624|gb|EGB40692.1| ribonuclease III [Escherichia coli H120]
 gi|323949221|gb|EGB45112.1| ribonuclease III [Escherichia coli H252]
 gi|323955803|gb|EGB51561.1| ribonuclease III [Escherichia coli H263]
 gi|323961182|gb|EGB56795.1| ribonuclease III [Escherichia coli H489]
 gi|323968015|gb|EGB63427.1| ribonuclease III [Escherichia coli M863]
 gi|323971107|gb|EGB66354.1| ribonuclease III [Escherichia coli TA007]
 gi|323978403|gb|EGB73488.1| ribonuclease III [Escherichia coli TW10509]
 gi|324113094|gb|EGC07070.1| ribonuclease III [Escherichia fergusonii B253]
 gi|324118223|gb|EGC12119.1| ribonuclease III [Escherichia coli E1167]
 gi|325496353|gb|EGC94212.1| ribonuclease III [Escherichia fergusonii ECD227]
 gi|326340373|gb|EGD64177.1| Ribonuclease III [Escherichia coli O157:H7 str. 1125]
 gi|327252277|gb|EGE63949.1| ribonuclease III [Escherichia coli STEC_7v]
 gi|330912336|gb|EGH40846.1| ribonuclease 3 [Escherichia coli AA86]
 gi|331039989|gb|EGI12209.1| ribonuclease III [Escherichia coli H736]
 gi|331042862|gb|EGI15003.1| ribonuclease III [Escherichia coli M605]
 gi|331048878|gb|EGI20954.1| ribonuclease III [Escherichia coli M718]
 gi|331054376|gb|EGI26403.1| ribonuclease III [Escherichia coli TA206]
 gi|331059934|gb|EGI31911.1| ribonuclease III [Escherichia coli TA143]
 gi|331064511|gb|EGI36422.1| ribonuclease III [Escherichia coli TA271]
 gi|331069289|gb|EGI40681.1| ribonuclease III [Escherichia coli TA280]
 gi|331075023|gb|EGI46343.1| ribonuclease III [Escherichia coli H591]
 gi|331079169|gb|EGI50371.1| ribonuclease III [Escherichia coli H299]
 gi|332088079|gb|EGI93204.1| ribonuclease III [Shigella boydii 5216-82]
 gi|332089189|gb|EGI94296.1| ribonuclease III [Shigella dysenteriae 155-74]
 gi|332100627|gb|EGJ03973.1| ribonuclease III [Shigella sp. D9]
 gi|332344442|gb|AEE57776.1| ribonuclease III [Escherichia coli UMNK88]
 gi|332753976|gb|EGJ84350.1| ribonuclease III [Shigella flexneri 4343-70]
 gi|332755808|gb|EGJ86166.1| ribonuclease III [Shigella flexneri 2747-71]
 gi|332761960|gb|EGJ92233.1| ribonuclease III [Shigella flexneri K-671]
 gi|332766568|gb|EGJ96773.1| ribonuclease III [Shigella flexneri 2930-71]
          Length = 226

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|300311260|ref|YP_003775352.1| dsRNA-specific ribonuclease [Herbaspirillum seropedicae SmR1]
 gi|300074045|gb|ADJ63444.1| dsRNA-specific ribonuclease (RNAse III) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 319

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 112/221 (50%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+G+ F + SLL++ALTH S S       ERLEFLGD +L  ++++LLF  +
Sbjct: 1   MDPQLLQQRLGHTFKDASLLQQALTHRSHS---ALHNERLEFLGDSVLNCVVASLLFERY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           D   EG+LS    +LV  ++  ++A+ L+L+ F+R+     K       SI AD +E+L 
Sbjct: 58  DKIDEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G E A   +   +             +DAKT LQE+   K    P+Y V    
Sbjct: 118 GAIFLDSGFEAARAVIRSLYVPVLEHVDPRTLGKDAKTLLQEFLQGKKIPLPQYNVIATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  H   F +   +  L     G   S+RA EQ AA   L+
Sbjct: 178 GAAHSQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALE 218


>gi|148259270|ref|YP_001233397.1| ribonuclease III [Acidiphilium cryptum JF-5]
 gi|146400951|gb|ABQ29478.1| RNAse III [Acidiphilium cryptum JF-5]
          Length = 221

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 84/216 (38%), Positives = 124/216 (57%), Gaps = 3/216 (1%)

Query: 10  EKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           E  +G+ FA   LL +ALTH S        S ERLEF+GDR+LGLLI+  L   F   +E
Sbjct: 6   EALLGHRFARPDLLAQALTHRSAVGQGGLGSNERLEFIGDRVLGLLIAEWLIERFPHERE 65

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L  R   LVS ++ +++A    +A  + VS    +       ++ AD +E+LI ALYL
Sbjct: 66  GGLGPRLAHLVSRQSLAEIAEHGGIAGLLSVSPGESRRGVRNRATVLADALEALIGALYL 125

Query: 129 DGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           DGG+E A  F+ + +  R   +     +D KT LQE+A A+  V P Y++  R+GP H P
Sbjct: 126 DGGLEPARLFIRRIFAPRIDGQPSAPPKDPKTALQEYALARGPVLPAYELVERTGPSHAP 185

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RF + V ++G   A+G+  +KR AEQ AA ++L++ 
Sbjct: 186 RFRIRVTVAGRT-AEGLAGTKREAEQNAARDLLEQL 220


>gi|83319588|ref|YP_424465.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|123535692|sp|Q2SRZ8|RNC_MYCCT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|83283474|gb|ABC01406.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 232

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 106/227 (46%), Gaps = 6/227 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +      ++      ++ + ++ALTH+S ++  +   SY+RLEFLGD IL + +S  LF 
Sbjct: 1   MNIKNFFEKYNIKINDQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYVSKFLFF 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H+    EGEL+   +S V  E+ S++A++++L   IR+             SI AD+ E+
Sbjct: 61  HYSKLGEGELTRLRSSTVREESLSRIAKDINLGQLIRLGHGELMTKGYEKQSILADIFEA 120

Query: 122 LIAALYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           L AA+Y+D   +         + KY K     +      ++ +    +  +  +    + 
Sbjct: 121 LTAAVYIDQNEDGLLIWLEQTLFKYMKDPTFINVTKDFKSELQELLQSEKRSDLKYIIEN 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                 ++   +TV V + G     G   SK+ AEQ AA++ L +  
Sbjct: 181 EEFFVNENKTLYTVSVNLDGQKFGVGKGYSKQEAEQNAASDCLSKLK 227


>gi|239928705|ref|ZP_04685658.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
 gi|291437029|ref|ZP_06576419.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
 gi|291339924|gb|EFE66880.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
          Length = 286

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 107/219 (48%), Gaps = 4/219 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 33  LEGRLGYQVE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 91

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R LDL SFIR+             SI AD +E++I A+
Sbjct: 92  PEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 151

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     KS             +   A  G+     +   +GPDH
Sbjct: 152 YLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 211

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  FT    + G++   G   SK+ AEQ AA    +   
Sbjct: 212 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRSIK 250


>gi|326382852|ref|ZP_08204542.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395]
 gi|326198442|gb|EGD55626.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395]
          Length = 234

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 102/221 (46%), Gaps = 7/221 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L   +G    +  LL  ALTH S ++      + ERLEFLGD +LG++++  L+  F   
Sbjct: 10  LTDVLGVTIDD-ELLTLALTHRSYAYENGGLPTNERLEFLGDAVLGVVVTERLYVGFPDR 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLA---SFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            EGEL+    S+V+    + VAR L      + +R+             SI AD +ESL 
Sbjct: 69  PEGELAKIRASVVNMHALADVARGLGEGGLGAHLRLGRGEELTGGRDKASILADGLESLF 128

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSG 182
            A++LD GIEVA T +   ++   ++SG+           +   A+  +         +G
Sbjct: 129 GAIFLDHGIEVAKTVIMNLFEPIIVRSGRLGAGLDWKTSLQELSAERSLGQPQYQISSTG 188

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH+  FT V  + G     G   +K+ AEQ AA    K  
Sbjct: 189 PDHNKEFTAVAVVGGDELGAGTGKTKKEAEQRAAELAWKAL 229


>gi|152989964|ref|YP_001355686.1| ribonuclease III [Nitratiruptor sp. SB155-2]
 gi|189043328|sp|A6Q1H0|RNC_NITSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|151421825|dbj|BAF69329.1| ribonuclease III [Nitratiruptor sp. SB155-2]
          Length = 226

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 71/209 (33%), Positives = 111/209 (53%), Gaps = 6/209 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M   +    EK++GY+F ++ LL++ALTH S       + ERLEFLGD +L L++   LF
Sbjct: 1   MK--QLEEFEKKLGYSFEDKKLLKEALTHKSYKSPV--NNERLEFLGDAVLDLVVGEYLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    SLV+ E  +++A++LD+  +I +S     +      S+ ++  E
Sbjct: 57  KKFPKANEGELSKLRASLVNEEGFAKLAQKLDIGKYIFISQAEENNQGRTKPSLLSNAFE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+YL+ G+E       K  ++   K       +D KT LQE+  A +G+TP YK+ 
Sbjct: 117 AVMGAIYLEKGLEKVRELSLKLLEEAYPKIDLDSLFKDFKTALQEFTQAHYGITPTYKLL 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             SGPDH   F V V +     +     S
Sbjct: 177 GSSGPDHKKEFEVAVLLHEETISTAKGRS 205


>gi|88812349|ref|ZP_01127599.1| ribonuclease III [Nitrococcus mobilis Nb-231]
 gi|88790356|gb|EAR21473.1| ribonuclease III [Nitrococcus mobilis Nb-231]
          Length = 226

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             + Y  L++R+GY F+  +LL +ALTH S    +  + ERLEFLGD +L  +++  +F+
Sbjct: 1   MTVEYDRLQERLGYRFSESTLLVRALTHRSA---FGPNNERLEFLGDSVLNFVVAAEVFD 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
               A+EGELS     LV+  + + +AREL L   +R+     K       SI +D +E+
Sbjct: 58  RRKQAREGELSRLRAKLVNQASLADIARELALGEALRLGGGEMKAGGQRRDSILSDTLEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
           ++ A+YLD G  +    + + +  R  +    R   D KT LQE   +     PEY+V  
Sbjct: 118 IVGAVYLDAGFAICREVIRRLYGNRLRELPSIRELKDPKTRLQEHLQSIRLPLPEYRVLE 177

Query: 180 RSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +G  H   F V   I G      G+  S+R AEQ AAA +L+R 
Sbjct: 178 IAGRAHAQTFQVECRIIGVETVTHGLANSRRQAEQKAAASMLQRL 222


>gi|297626608|ref|YP_003688371.1| ribonuclease III [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922373|emb|CBL56945.1| Ribonuclease III [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 240

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 100/230 (43%), Gaps = 8/230 (3%)

Query: 1   MSAL-----RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGL 53
           M++      R++ L K +G    +  LL  ALTH S ++ +      ERLEFLGD +LG+
Sbjct: 1   MNSSESGSSRFAELIKELGV-PLDAELLGLALTHRSYAYEHGQIPHNERLEFLGDSVLGI 59

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            ++  L+ HF    EG L+    ++VS+ + ++VAR L +   +++            TS
Sbjct: 60  NVTDYLYRHFPDYAEGRLAKLRAAVVSSVSLAEVARSLGIGQLVKLGHGELTTGGRDKTS 119

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
           I AD  E+LI A+Y+      A      +                    +   A     P
Sbjct: 120 ILADTTEALIGAIYMTDPSGAAKFVHHIFDPLVDRAVKMGAGLDWKTSLQEIAAAMESDP 179

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                  +GPDHD RFT V  + G     GM  +K+ AEQ AA    +  
Sbjct: 180 PEYRISETGPDHDKRFTAVALVDGRTFDPGMGHNKKQAEQHAAENAFRVL 229


>gi|71274462|ref|ZP_00650750.1| Ribonuclease III [Xylella fastidiosa Dixon]
 gi|71901683|ref|ZP_00683759.1| Ribonuclease III [Xylella fastidiosa Ann-1]
 gi|170730564|ref|YP_001775997.1| ribonuclease III [Xylella fastidiosa M12]
 gi|238687923|sp|B0U3D8|RNC_XYLFM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71164194|gb|EAO13908.1| Ribonuclease III [Xylella fastidiosa Dixon]
 gi|71728553|gb|EAO30708.1| Ribonuclease III [Xylella fastidiosa Ann-1]
 gi|167965357|gb|ACA12367.1| Ribonuclease III [Xylella fastidiosa M12]
          Length = 227

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M + + S  ++RIGY F + SLL +AL H S         ERLEFLGD ++ LLI+  LF
Sbjct: 1   MISSKASDYQQRIGYVFTDPSLLLQALRHCSAG---TPHNERLEFLGDSVVNLLIAEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +  A EG L+   + LV   + + +AR + L   + +     K       SI AD VE
Sbjct: 58  QRWPRADEGALTRARSELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD  +    T V  +++    AL  GK  +D KT LQEW  A+    P Y++ 
Sbjct: 118 AVIAAIYLDADLATCRTVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELI 177

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
           F SG  H   F V   +  L    +G   S+R AEQ AA+  + + 
Sbjct: 178 FESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAASHAINQL 223


>gi|255994063|ref|ZP_05427198.1| ribonuclease III [Eubacterium saphenum ATCC 49989]
 gi|255993731|gb|EEU03820.1| ribonuclease III [Eubacterium saphenum ATCC 49989]
          Length = 252

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 103/229 (44%), Gaps = 9/229 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTLL 59
               LE +I Y F++R+LL  ALTH S+     +   + + +RLE+LGD IL L+I  LL
Sbjct: 3   NLDALETKINYKFSDRNLLITALTHVSMLGKVHNMDRKSTNQRLEYLGDAILYLVIGELL 62

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F       EG L+   +++V+  + S++A++LDL   I + S   K +     +I AD  
Sbjct: 63  FIKRPDYDEGNLTKARSNIVNNHSLSEMAKKLDLGRHIEMDSSTEKHMGRRNEAILADTF 122

Query: 120 ESLIAALY----LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           E+L+ A++     +   E       K  ++ A    K     + +    A        +Y
Sbjct: 123 EALMGAIFLDAGYEKTHEFINKLFIKRIEEAATGEAKADYKTRLQECVHACGITNYYIKY 182

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                 G  H   F +   ++    ++G+  SK+ A+Q AA    +   
Sbjct: 183 HTISEKGDQHCKTFRIGAYLNNTKLSEGVGKSKKEAQQNAARLFFENMK 231


>gi|119509571|ref|ZP_01628718.1| ribonuclease III [Nodularia spumigena CCY9414]
 gi|119465760|gb|EAW46650.1| ribonuclease III [Nodularia spumigena CCY9414]
          Length = 226

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 7/215 (3%)

Query: 16  AFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
            F N  LL++ALTH S  +    ++  ERLEFLGD +L  +    L+  +    E E++ 
Sbjct: 6   NFQNEKLLQQALTHRSYVNENPGEKHNERLEFLGDALLTFISGEYLYTRYPEIAEDEMTR 65

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           R ++LV  +  ++ A E+ L   +R+     +D      ++ +   ES++ A YLD    
Sbjct: 66  RRSALVDEKQLAKFAIEVGLDFKMRLGRGAIQDGGFQSPNLLSSAFESVVGAYYLDCDRN 125

Query: 134 VAGTFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPR 188
           +               +A+   +   D+K   QEW  AKFG      +T R G  DH P 
Sbjct: 126 IEKIRPIIADLFNSVPQAIMEIRSNVDSKNRFQEWVQAKFGTLLPKYITERIGGQDHAPE 185

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   V +       G    K+ AE+ AA   L   
Sbjct: 186 YLAQVFVGEQVYGYGKARGKKEAEKQAAENALSNL 220


>gi|212702556|ref|ZP_03310684.1| hypothetical protein DESPIG_00579 [Desulfovibrio piger ATCC 29098]
 gi|212673997|gb|EEB34480.1| hypothetical protein DESPIG_00579 [Desulfovibrio piger ATCC 29098]
          Length = 243

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 104/225 (46%), Gaps = 6/225 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFN 61
               +E+ + Y F+    +  ALTHSS ++ +   Q   ERLEFLGD +L L IS  LF 
Sbjct: 15  DLERIERILDYHFSRPERVALALTHSSWANEHGLGQAHNERLEFLGDAVLELCISWELFT 74

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+++   + LV   + +Q ARE  +   +R+     +       ++ +DV E+
Sbjct: 75  RFPQAREGDMTRVRSQLVGTTSLAQRARETGIDQLLRLGRGEEQQGGRSRDAVLSDVFEA 134

Query: 122 LIAALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++A++Y DGG   A   V + +              +D KT LQE + A F   P Y   
Sbjct: 135 VLASVYEDGGYAAAQKVVARIFGTLLDEVSVGKPKTKDFKTSLQERSVALFHDRPVYTTL 194

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP+H   FTV V +           S + AEQ AA   L   
Sbjct: 195 ACEGPEHARHFTVQVSLPSGQQFTASGSSCKKAEQEAARLALCAL 239


>gi|311278500|ref|YP_003940731.1| ribonuclease III [Enterobacter cloacae SCF1]
 gi|308747695|gb|ADO47447.1| ribonuclease III [Enterobacter cloacae SCF1]
          Length = 226

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFHHQELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEQLILSWYQSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|152971423|ref|YP_001336532.1| ribonuclease III [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|206580271|ref|YP_002237090.1| ribonuclease III [Klebsiella pneumoniae 342]
 gi|288934052|ref|YP_003438111.1| ribonuclease III [Klebsiella variicola At-22]
 gi|189043322|sp|A6TCI1|RNC_KLEP7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741374|sp|B5XNH0|RNC_KLEP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|150956272|gb|ABR78302.1| ribonuclease III [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|206569329|gb|ACI11105.1| ribonuclease III [Klebsiella pneumoniae 342]
 gi|288888781|gb|ADC57099.1| ribonuclease III [Klebsiella variicola At-22]
          Length = 226

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 111/213 (52%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFHHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +      +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQNVERLILSWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|326402425|ref|YP_004282506.1| ribonuclease III [Acidiphilium multivorum AIU301]
 gi|325049286|dbj|BAJ79624.1| ribonuclease III [Acidiphilium multivorum AIU301]
          Length = 221

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 85/216 (39%), Positives = 125/216 (57%), Gaps = 3/216 (1%)

Query: 10  EKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           E  +G+ FA   LL +ALTH S        S ERLEF+GDR+LGLLI+  L   F   +E
Sbjct: 6   EALLGHRFARPDLLAQALTHRSAVGQGGLGSNERLEFIGDRVLGLLIAEWLIERFPHERE 65

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L  R   LVS ++ +++A    +A  + VS    +       ++ AD +E+LI ALYL
Sbjct: 66  GGLGPRLAHLVSRQSLAEIAEHGGIAGLLSVSPGESRRGVRNRATVLADALEALIGALYL 125

Query: 129 DGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           DGG+E A  F+ + +  R   +     +D KT LQE+A A+  V P Y++  R+GP H P
Sbjct: 126 DGGLEPARLFIRRIFAPRIDGQPSAPPKDPKTALQEYALARGPVLPAYELVERTGPSHAP 185

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RF + V ++G A A+G+  +KR AEQ AA ++L++ 
Sbjct: 186 RFRIRVTVAGRA-AEGLAGTKREAEQNAARDLLEQL 220


>gi|71907657|ref|YP_285244.1| ribonuclease III [Dechloromonas aromatica RCB]
 gi|90101622|sp|Q47EF7|RNC_DECAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71847278|gb|AAZ46774.1| RNAse III [Dechloromonas aromatica RCB]
          Length = 222

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 79/216 (36%), Positives = 119/216 (55%), Gaps = 6/216 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           K++ + F++++L   ALTH S       + ERLEFLGD +L  +I+  L++ F    EG+
Sbjct: 8   KKLNHCFSDQALFRTALTHRSFG---TPNNERLEFLGDGVLDFVIAASLYHRFPDLPEGD 64

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           LS    +LV  ET  ++A EL++ +F+R+     K   +   SI AD +E+L  A+YLD 
Sbjct: 65  LSRLRANLVRQETLHRLALELNIGAFLRLGEGELKSGGAQRPSILADALEALFGAIYLDA 124

Query: 131 GIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           G E +   ++K +      LK G+F++DAKT LQEW   +    P Y +   +G  H+ R
Sbjct: 125 GFEASRAVIEKLFAPLLDDLKPGQFQKDAKTRLQEWLQGRKKALPRYHLLEATGAAHEQR 184

Query: 189 FTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
           F +  EI   A    G   S+R AEQVAA + LK  
Sbjct: 185 FEIACEIESPALRTVGHGSSRRIAEQVAAEKALKEL 220


>gi|332017989|gb|EGI58626.1| Ribonuclease 3 [Acromyrmex echinatior]
          Length = 1326

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  S   ++    S +RLEFLGD +L L++S  L+ +
Sbjct: 1036 KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKY 1095

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T + V  +L +  +    +   +      T  +AD++E+ 
Sbjct: 1096 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK----TKDRADLLEAF 1151

Query: 123  IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA------HAKFGVTPE 174
            + ALY+D G++    F D  +    +     +   D K++LQ+               P 
Sbjct: 1152 LGALYVDKGLKYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1211

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV    GP +   +TV V   G   A     S + AE  +A E L++
Sbjct: 1212 YKVIECKGPTNTRVYTVAVYFQGKRLATASGHSIQEAEMNSAKEALEK 1259



 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE+ +GY F NR LL+ ALTH S   ++  +
Sbjct: 805 LDNLERTLGYEFKNRYLLQLALTHPSYRENFGTN 838



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 58/122 (47%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
              ERLEFLGD ++  L S  LF+ F   +EG L+    ++V  +  + +A++L+L  ++ 
Sbjct: 893  HNERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYML 952

Query: 99   VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158
             +          +    A+  E+L+ +L+LDGGIEVA     +   +      K   +  
Sbjct: 953  YAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKGEEDLAKVWVNYP 1012

Query: 159  TE 160
              
Sbjct: 1013 RH 1014


>gi|15291861|gb|AAK93199.1| LD29995p [Drosophila melanogaster]
          Length = 1071

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 6/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ HF
Sbjct: 719 LTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHF 778

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG LS+  +SLV+  T + V  +L +  +   ++            +    + +L 
Sbjct: 779 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLKTKDRADLLEAFLGALY 838

Query: 124 A----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
                              +  +   +     K +                  P YKV  
Sbjct: 839 VDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVVE 898

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 899 ASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 941



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE+ IGY F NR LL+ ALTH S   +Y  +
Sbjct: 487 LDLLEESIGYRFKNRYLLQLALTHPSYKENYGTN 520



 Score = 43.4 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%)

Query: 36  YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95
                ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A++L L  
Sbjct: 572 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 631

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           F+  +          +    A+  E+L+ AL LDGGI+
Sbjct: 632 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 669


>gi|227548991|ref|ZP_03979040.1| ribonuclease III [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078942|gb|EEI16905.1| ribonuclease III [Corynebacterium lipophiloflavum DSM 44291]
          Length = 254

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 104/221 (47%), Gaps = 6/221 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLF 60
            + ++ L   +G       +L  ALTH S ++ +    + ERLEFLGD +LGL ++  L+
Sbjct: 21  RVDHAPLLAALGVEVE-PEILRLALTHRSFANEHGPLPNNERLEFLGDAVLGLSVANSLY 79

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F S  E ++S    S+VS    + VARE+ L + + +             SI AD  E
Sbjct: 80  ERFPSRPESDISKMRASIVSRYGLADVAREIGLGAHVLLGRGEEVTGGRDKDSILADTTE 139

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L  A+Y   G E A   V + ++ +   +      +D KT LQE          EY+ T
Sbjct: 140 ALFGAIYRQHGFEPARDVVLRLFESKLESATATGRHQDWKTVLQERLAELKAPAAEYRAT 199

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
              GPDHD  FT  V +   +  +G+  +K+ AEQ AA   
Sbjct: 200 SV-GPDHDQTFTADVFVGEDSRGRGVGPNKKLAEQEAARIA 239


>gi|195026766|ref|XP_001986330.1| GH21300 [Drosophila grimshawi]
 gi|193902330|gb|EDW01197.1| GH21300 [Drosophila grimshawi]
          Length = 1324

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 81/224 (36%), Gaps = 6/224 (2%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E  +G  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ H
Sbjct: 966  DLTKFEDSVGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1025

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L +  +   ++            +    + +L
Sbjct: 1026 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPQYAVYANPKADLKTKDRADLLEAFLGAL 1085

Query: 123  IA----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
                                +  +   +     K +                  P YKV 
Sbjct: 1086 YVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVV 1145

Query: 179  FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              +GP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1146 EATGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALEN 1189



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE+ IGY F NR LL+ ALTH S   +Y  +
Sbjct: 735 LDLLEESIGYKFKNRYLLQLALTHPSYKENYGTN 768



 Score = 43.0 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%)

Query: 36  YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95
                ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A++L L  
Sbjct: 820 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 879

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           F+  +          +    A+  E+L+ AL LDGGI+
Sbjct: 880 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 917


>gi|153853253|ref|ZP_01994662.1| hypothetical protein DORLON_00647 [Dorea longicatena DSM 13814]
 gi|149754039|gb|EDM63970.1| hypothetical protein DORLON_00647 [Dorea longicatena DSM 13814]
          Length = 235

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 110/226 (48%), Gaps = 5/226 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57
            +     LE +IGY F + +L  KA+ HSS ++       E  ERLEFLGD +L L+ S 
Sbjct: 5   MSKDLKELEGKIGYKFDDFTLFTKAMIHSSYANEKHLPKYECNERLEFLGDAVLELVSSE 64

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF++     EGEL+    S+V     +  AR+LDL  ++ +             S+ +D
Sbjct: 65  FLFHNNPKLPEGELTKTRASMVCEPALAFCARDLDLGEYLLLGKGEDATGGRKRESVTSD 124

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+YLDGG   A  F+ ++  +      K   D+KT LQE   A F     Y +
Sbjct: 125 AMEALIGAIYLDGGFANAKEFIHRFILKDLENK-KLFFDSKTILQEIVQANFKEVISYHL 183

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDH+  F V V I       G   +K+AAEQ AA   + + 
Sbjct: 184 IGEEGPDHNKIFRVAVHIGEEEYGVGEGRTKKAAEQEAAYISILKL 229


>gi|323342032|ref|ZP_08082265.1| ribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464457|gb|EFY09650.1| ribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 226

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/209 (32%), Positives = 105/209 (50%), Gaps = 4/209 (1%)

Query: 19  NRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           N+ L+  A  HSS  +  +E     ERLEF+GD +L + +S  LF H D   EG++++  
Sbjct: 16  NKDLINNAFIHSSYVNEAEELLEDNERLEFMGDAVLQICVSERLFKHQDHFNEGDMTLYR 75

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
             LV  +  +Q + +L L  ++ +     K+      SI AD+ ES I ALYLD GI+  
Sbjct: 76  AKLVCEDALAQYSLKLKLNDYLMLGMGEEKNGGRVRVSIIADLFESFIGALYLDSGIDSV 135

Query: 136 GTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
              +D        +       D KT+LQE+  +    +  Y+V    GP + P F VVV+
Sbjct: 136 NRVLDSVMNDAFNELESLSITDYKTKLQEYIQSDSRKSVSYEVINVVGPSNAPEFEVVVK 195

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  L   QG   SK+ AEQ+AA +  ++ 
Sbjct: 196 LDELIFGQGKGLSKKKAEQMAAKDAFEKL 224


>gi|71737399|ref|YP_276084.1| ribonuclease III [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|90101635|sp|Q48EV3|RNC_PSE14 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71557952|gb|AAZ37163.1| ribonuclease III [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 229

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 78/215 (36%), Positives = 110/215 (51%), Gaps = 6/215 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF 
Sbjct: 1   MSVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+
Sbjct: 58  RFPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD G+E A   V  +              +D KT LQE+  ++    P Y+V  
Sbjct: 118 LIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVD 177

Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
             G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 178 IHGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212


>gi|195581370|ref|XP_002080507.1| GD10519 [Drosophila simulans]
 gi|194192516|gb|EDX06092.1| GD10519 [Drosophila simulans]
          Length = 1310

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 6/223 (2%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ HF
Sbjct: 959  LTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1018

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG LS+  +SLV+  T + V  +L +  +   ++            +    + +L 
Sbjct: 1019 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLKTKDRADLLEAFLGALY 1078

Query: 124  A----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
                               +  +   +     K +                  P YKV  
Sbjct: 1079 VDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVVE 1138

Query: 180  RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1139 ASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1181



 Score = 43.0 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%)

Query: 36  YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95
                ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A++L L  
Sbjct: 812 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 871

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           F+  +          +    A+  E+L+ AL LDGGI+
Sbjct: 872 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 909



 Score = 42.6 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE+ IGY F NR +L+ A  H S    Y  +
Sbjct: 727 LDLLEESIGYRFKNRYILQLANRHPSYKEKYGTN 760


>gi|260598950|ref|YP_003211521.1| ribonuclease III [Cronobacter turicensis z3032]
 gi|260218127|emb|CBA32925.1| Ribonuclease 3 [Cronobacter turicensis z3032]
          Length = 236

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 11  MNPIVINRLQRKLGYTFHHQDLLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 67

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 68  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 127

Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 128 ALIGGIFLDSDIQTVERLILTWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 187

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 188 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 220


>gi|295097900|emb|CBK86990.1| RNAse III [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 226

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFHHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|296104242|ref|YP_003614388.1| ribonuclease III [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295058701|gb|ADF63439.1| ribonuclease III [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 239

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 14  MNPIVINRLQRKLGYTFHHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 70

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 71  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 130

Query: 121 SLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 131 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 190

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 191 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 223


>gi|302554407|ref|ZP_07306749.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
 gi|302472025|gb|EFL35118.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
          Length = 274

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 23  LEGRLGYKVE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 81

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R LDL SFIR+             SI AD +E++I A+
Sbjct: 82  PEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 141

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     KS             +   A  G+     +   +GPDH
Sbjct: 142 YLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 201

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 202 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRSI 239


>gi|320325568|gb|EFW81630.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327146|gb|EFW83160.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330879244|gb|EGH13393.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 229

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 77/215 (35%), Positives = 110/215 (51%), Gaps = 6/215 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF 
Sbjct: 1   MSVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS     LV  ET + +AR  +L  ++R+ S   K       SI AD +E+
Sbjct: 58  RFPQAREGQLSRLRARLVKGETLALLARGFNLGEYLRLGSGELKSGGFRRESILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD G+E A   V  +              +D KT LQE+  ++    P Y+V  
Sbjct: 118 LIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVD 177

Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
             G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 178 IQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212


>gi|322378529|ref|ZP_08052977.1| ribonuclease III [Helicobacter suis HS1]
 gi|321149043|gb|EFX43495.1| ribonuclease III [Helicobacter suis HS1]
          Length = 216

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 4/212 (1%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           GY F +  LL++ALTH S      ++ ERLEFLGD +L L+++ +LF  F   +EG+LS 
Sbjct: 2   GYVFKDPLLLQQALTHRS--TKAHKNNERLEFLGDAVLDLVVAEILFTRFTDLQEGDLSK 59

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              SLV+ +   ++A  L+L   I +S     +      SI +   E+L+ A+YL+ G+E
Sbjct: 60  MRASLVNEKAFFKLALSLNLQDHILISQAEANNNGHTKPSILSSAFEALMGAIYLESGLE 119

Query: 134 VAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           +    +          L       D K+ LQE   A+F   P Y +   SGPDH  +F +
Sbjct: 120 IIKNLIQDLLDMAYPNLSPKTLFMDYKSALQELTQARFKAIPIYALKSESGPDHAKQFEM 179

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + I           SK+ AEQ+ A    K+ 
Sbjct: 180 QIFILNKLYGTCKAGSKKQAEQLCAQVAYKQL 211


>gi|260578984|ref|ZP_05846886.1| ribonuclease III [Corynebacterium jeikeium ATCC 43734]
 gi|258602849|gb|EEW16124.1| ribonuclease III [Corynebacterium jeikeium ATCC 43734]
          Length = 244

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 4/207 (1%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL  ALTH S ++      + ERLEFLGD +LGL ++  L+  F    E ++S   + +
Sbjct: 36  DLLRLALTHRSFANENGHLPNNERLEFLGDAVLGLAVAEQLYRQFPERAESDISKMRSGV 95

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           V+    + VAR L +  +I +             SI AD VES++ A+YL  G +VA   
Sbjct: 96  VNMYALADVARHLGMGDYILLGRGEMLTGGKDKHSILADSVESMLGAIYLHHGFDVARAT 155

Query: 139 VDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
           V + + ++  ++           +     +   +          GP+HD  F   V I  
Sbjct: 156 VLRLFAEKITEAPTTGLTMDWKTVLLEKLSDMKLPLPTYEVRGEGPEHDKTFYATVTIED 215

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKREG 224
           L    G   +K+ AE  AA + +++  
Sbjct: 216 LV-THGEGHTKKVAEHAAAKQAVQKLN 241


>gi|68536283|ref|YP_250988.1| ribonuclease III [Corynebacterium jeikeium K411]
 gi|90101621|sp|Q4JUY7|RNC_CORJK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|68263882|emb|CAI37370.1| ribonuclease III [Corynebacterium jeikeium K411]
          Length = 244

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 4/207 (1%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL  ALTH S ++      + ERLEFLGD +LGL ++  L+  F    E ++S   + +
Sbjct: 36  DLLRLALTHRSFANENGHLPNNERLEFLGDAVLGLAVAEQLYRQFPERAESDISKMRSGV 95

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           V+    + VAR L +  +I +             SI AD VES++ A+YL  G EVA   
Sbjct: 96  VNMYALADVARRLGMGDYILLGRGEMLTGGKDKHSILADSVESMLGAIYLHHGFEVARAT 155

Query: 139 VDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
           V + + ++  ++           +     +   +          GP+HD  F   V I  
Sbjct: 156 VLRLFAEKITEAPTTGLTMDWKTVLLEKLSDMKLPLPTYEVRGEGPEHDKTFYATVTIED 215

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKREG 224
           L    G   +K+ AE  AA + +++  
Sbjct: 216 LV-THGEGHTKKVAEHAAAKQAVQKLN 241


>gi|330964520|gb|EGH64780.1| ribonuclease III [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 227

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 78/215 (36%), Positives = 110/215 (51%), Gaps = 6/215 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF 
Sbjct: 1   MSVSLSRLERQLGYTFKDQELMILALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+
Sbjct: 58  RFPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD G+E A   V  +              +D KT LQE+  ++    P Y+V  
Sbjct: 118 LIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVD 177

Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
             G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 178 IQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212


>gi|46579851|ref|YP_010659.1| ribonuclease III [Desulfovibrio vulgaris str. Hildenborough]
 gi|81404810|sp|Q72C44|RNC_DESVH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|46449267|gb|AAS95918.1| ribonuclease III [Desulfovibrio vulgaris str. Hildenborough]
          Length = 253

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 109/219 (49%), Gaps = 5/219 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62
              L+K IG+ F +  LL  A+THSS ++      E  ERLEFLGD +L L +S  LF  
Sbjct: 29  VDELQKTIGHRFGDMELLLTAMTHSSWANEQAVPVEHNERLEFLGDAVLELCVSEELFRR 88

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F SA+EG+L+   + LVS  +   VAREL L   +R+             S+ +D +E++
Sbjct: 89  FPSAREGDLTRMRSRLVSKPSLEGVARELRLDMSLRLGKGEESQGGRERGSLLSDALEAM 148

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A++LD G   A   V +       +       +D K++LQE     F   P Y +   
Sbjct: 149 LGAVFLDAGYIAAKGVVMRILGPHFPEALVPVRTKDYKSQLQELTQKLFRDRPVYTLLGS 208

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           SGP+HD +F V V +      +    S + AEQ+AAA  
Sbjct: 209 SGPEHDKQFDVRVVLPDGTVFEATGPSMKRAEQMAAARA 247


>gi|28871359|ref|NP_793978.1| ribonuclease III [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213971119|ref|ZP_03399238.1| ribonuclease III [Pseudomonas syringae pv. tomato T1]
 gi|237798713|ref|ZP_04587174.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|237806146|ref|ZP_04592850.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|301381864|ref|ZP_07230282.1| ribonuclease III [Pseudomonas syringae pv. tomato Max13]
 gi|302063246|ref|ZP_07254787.1| ribonuclease III [Pseudomonas syringae pv. tomato K40]
 gi|302132832|ref|ZP_07258822.1| ribonuclease III [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|37999381|sp|Q87XG1|RNC_PSESM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28854610|gb|AAO57673.1| ribonuclease III [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213924108|gb|EEB57684.1| ribonuclease III [Pseudomonas syringae pv. tomato T1]
 gi|331015601|gb|EGH95657.1| ribonuclease III [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
 gi|331021566|gb|EGI01623.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331027259|gb|EGI07314.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 229

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 78/215 (36%), Positives = 110/215 (51%), Gaps = 6/215 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF 
Sbjct: 1   MSVSLSRLERQLGYTFKDQELMILALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+
Sbjct: 58  RFPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD G+E A   V  +              +D KT LQE+  ++    P Y+V  
Sbjct: 118 LIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVD 177

Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
             G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 178 IQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212


>gi|195474532|ref|XP_002089545.1| GE19158 [Drosophila yakuba]
 gi|194175646|gb|EDW89257.1| GE19158 [Drosophila yakuba]
          Length = 1328

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 6/223 (2%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ HF
Sbjct: 975  LTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1034

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG LS+  +SLV+  T + V  +L +  +   ++            +    + +L 
Sbjct: 1035 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLKTKDRADLLEAFLGALY 1094

Query: 124  A----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
                               +  +   +     K +                  P YKV  
Sbjct: 1095 VDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVVE 1154

Query: 180  RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1155 ASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1197



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE+ IGY F NR LL+ ALTH S   +Y  +
Sbjct: 743 LDLLEESIGYRFKNRYLLQLALTHPSYKENYGTN 776



 Score = 43.0 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%)

Query: 36  YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95
                ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A++L L  
Sbjct: 828 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 887

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           F+  +          +    A+  E+L+ AL LDGGI+
Sbjct: 888 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 925


>gi|329936742|ref|ZP_08286449.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
 gi|329303972|gb|EGG47855.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
          Length = 273

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 67/218 (30%), Positives = 107/218 (49%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 30  LEGRLGYRLE-TALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 88

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R L+L SF+R+             SI AD +E++I A+
Sbjct: 89  PEGQLAKLRAAVVNSRALAEVGRGLELGSFVRLGRGEEGTGGRDKASILADTLEAVIGAV 148

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     KS             +   A  G+     +   +GPDH
Sbjct: 149 YLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVSETGPDH 208

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 209 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRSI 246


>gi|116620923|ref|YP_823079.1| RNAse III [Candidatus Solibacter usitatus Ellin6076]
 gi|122255019|sp|Q027L3|RNC_SOLUE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116224085|gb|ABJ82794.1| RNAse III [Candidatus Solibacter usitatus Ellin6076]
          Length = 271

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 107/232 (46%), Gaps = 17/232 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLL 59
           LE ++ Y F +  LL +ALTHSS+++  +            E+LEFLGD +LG LI+  L
Sbjct: 8   LELKLDYRFNDPELLRRALTHSSLANENRPGAGVGSPLNDNEQLEFLGDSVLGFLIAEAL 67

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              F    EG+LS     LVSA     VAR LDL S++ +             ++  D +
Sbjct: 68  VRRFPEYHEGDLSRLKAHLVSAAHLHGVARRLDLGSYLELGRSEEMSGGRTKKTLLVDGL 127

Query: 120 ESLIAALYLDGGIE--------VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
           E+++AA+YLDGG++                  ++          + K+ LQE A  +   
Sbjct: 128 EAIMAAIYLDGGVDAARAFVATHVLDAPFFGDEEAGTDIQPAITNFKSALQELAQTRRLP 187

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            P Y V    GP+H   FTV V +     AQ    +K+ A Q AA  + +R 
Sbjct: 188 QPRYSVVRERGPEHSKTFTVEVRVGKEWTAQAEGRTKKIAAQRAARGLYERL 239


>gi|29829207|ref|NP_823841.1| ribonuclease III [Streptomyces avermitilis MA-4680]
 gi|81719920|sp|Q82JT9|RNC_STRAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|29606313|dbj|BAC70376.1| putative ribonuclease III [Streptomyces avermitilis MA-4680]
          Length = 276

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 24  LEGRLGYKLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 82

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R L+L SFIR+             SI AD +E++I A+
Sbjct: 83  PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 142

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G+E AG  V + +     KS             +   A  G+     +   +GPDH
Sbjct: 143 YLDQGLEAAGELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 202

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 203 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRAI 240


>gi|311739750|ref|ZP_07713585.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305566|gb|EFQ81634.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 256

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 6/224 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           + +S L + +G        L  ALTH S ++      + ERLEFLGD +LGL +++ L+ 
Sbjct: 20  VDHSPLLESLGVDLQ-PEHLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVASQLYI 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + S  E ++S    S+VS    S +ARE++L   I +    +        SI AD  E+
Sbjct: 79  TYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +  A+Y + G E A   + + + ++   +       D KT LQE         P Y  T 
Sbjct: 139 IFGAIYREHGFETARDVILRLFAEKIDNATVSGRHLDWKTTLQELCAELKAPMPVYSATS 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +GP+HD  F  V  ++GL    G+  +K+ AEQ AA E  +  
Sbjct: 199 -TGPEHDQTFNAVATVAGLTVGNGVGHNKKLAEQQAAQEACQTL 241


>gi|163760595|ref|ZP_02167676.1| putative ribonuclease III [Hoeflea phototrophica DFL-43]
 gi|162282210|gb|EDQ32500.1| putative ribonuclease III [Hoeflea phototrophica DFL-43]
          Length = 244

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 131/217 (60%), Positives = 165/217 (76%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E+RIG+ F++   LE+ALTH+S   +   +YERLEFLGDR+LGL ++ LLF HF +A EG
Sbjct: 16  EERIGHQFSSPVRLERALTHASTRTNTNGNYERLEFLGDRVLGLCVAELLFGHFGNATEG 75

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           E+SVR N LVSA+TCS+VA +L L  FIR  +D++K     M +++ADVVESLIAA+YLD
Sbjct: 76  EMSVRLNQLVSAQTCSEVADDLGLHEFIRTGADVKKLTGKRMANVRADVVESLIAAIYLD 135

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
            G+E A +F+ K+WK RAL     RRDAKTELQEWAHA+FGVTP Y+VT R+GPDH+P F
Sbjct: 136 AGLEAARSFIHKHWKARALAEDGARRDAKTELQEWAHARFGVTPVYRVTDRAGPDHEPVF 195

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           TV VEI+G  PA G   SKRAAEQ AA  VL+REG+W
Sbjct: 196 TVTVEINGAKPASGESSSKRAAEQAAATAVLEREGVW 232


>gi|87311240|ref|ZP_01093362.1| ribonuclease III [Blastopirellula marina DSM 3645]
 gi|87285980|gb|EAQ77892.1| ribonuclease III [Blastopirellula marina DSM 3645]
          Length = 243

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 82/217 (37%), Positives = 120/217 (55%), Gaps = 3/217 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            S  E RIGY F  +SLL+ ALTH+S +    ES ERLEFLGD ILG ++   LF+ F  
Sbjct: 15  ISRCEVRIGYEFQEKSLLKSALTHASGASHRLESNERLEFLGDAILGRVVCEALFHSFPH 74

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+   + +VS  TC++++R L L  F+ V   +        + + ADV E++IAA
Sbjct: 75  FLEGDLTRIKSVVVSRLTCAKLSRVLGLEEFLIVGKGMSSSPSVPPS-LLADVFEAIIAA 133

Query: 126 LYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGG + A  FV +  +       SG+   + K+ LQ++A  + G TP Y +    GP
Sbjct: 134 IYLDGGPKPAEDFVLRNLEDEIELAVSGEAGANFKSALQQYAQREHGATPNYLLLDEKGP 193

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           DH   F V  +++G+        +K+ AEQ AA   L
Sbjct: 194 DHSKCFQVAAQVAGIRYVAAWGRNKKEAEQRAAQNAL 230


>gi|302537165|ref|ZP_07289507.1| ribonuclease III [Streptomyces sp. C]
 gi|302446060|gb|EFL17876.1| ribonuclease III [Streptomyces sp. C]
          Length = 273

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 6/222 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 23  LEGRLGYQLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYTTHPDL 81

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R L+L SFIR+             SI AD +E++I A+
Sbjct: 82  PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 141

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     KS             +   A  G+     +   +GPDH
Sbjct: 142 YLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLVTETGPDH 201

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +  FT    + G++   G   SK+ AEQ AA    +  GI T
Sbjct: 202 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR--GIRT 241


>gi|283786183|ref|YP_003366048.1| Ribonuclease III [Citrobacter rodentium ICC168]
 gi|282949637|emb|CBG89256.1| Ribonuclease III [Citrobacter rodentium ICC168]
          Length = 226

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFTHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGYRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|66047178|ref|YP_237019.1| ribonuclease III [Pseudomonas syringae pv. syringae B728a]
 gi|257486563|ref|ZP_05640604.1| ribonuclease III [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289628144|ref|ZP_06461098.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289649890|ref|ZP_06481233.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. 2250]
 gi|289676656|ref|ZP_06497546.1| ribonuclease III [Pseudomonas syringae pv. syringae FF5]
 gi|298488677|ref|ZP_07006706.1| Ribonuclease III [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|302186917|ref|ZP_07263590.1| ribonuclease III [Pseudomonas syringae pv. syringae 642]
 gi|75500898|sp|Q4ZPE1|RNC_PSEU2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|63257885|gb|AAY38981.1| Ribonuclease III [Pseudomonas syringae pv. syringae B728a]
 gi|298156750|gb|EFH97841.1| Ribonuclease III [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330871241|gb|EGH05950.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330898515|gb|EGH29934.1| ribonuclease III [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330950056|gb|EGH50316.1| ribonuclease III [Pseudomonas syringae Cit 7]
 gi|330973032|gb|EGH73098.1| ribonuclease III [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330989032|gb|EGH87135.1| ribonuclease III [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331010046|gb|EGH90102.1| ribonuclease III [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 229

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 78/215 (36%), Positives = 110/215 (51%), Gaps = 6/215 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF 
Sbjct: 1   MSVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+
Sbjct: 58  RFPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD G+E A   V  +              +D KT LQE+  ++    P Y+V  
Sbjct: 118 LIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVD 177

Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
             G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 178 IQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212


>gi|225621561|ref|YP_002722820.1| ribonuclease III [Brachyspira hyodysenteriae WA1]
 gi|225216382|gb|ACN85116.1| ribonuclease III [Brachyspira hyodysenteriae WA1]
          Length = 243

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 7/229 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIS 56
           M+  +  +  +  + Y F N+  L +A+TH + ++  ++     +RLEFLGD +L L+IS
Sbjct: 1   MNIDKILNNCQTALKYEFRNKDHLLEAITHRTYANESKKKMKYNQRLEFLGDSVLSLIIS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  + S+KEG LS   +SLVS ++ + +++EL L  F+ +          +  ++  
Sbjct: 61  DYLFKKYSSSKEGLLSKVKSSLVSQKSLADISKELKLGDFLLLGHGEEASGGRYRDNMLE 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           D+ E+++ A+YLD GI  A  FV + +K+R   L    F +D KT  QE    K   +P 
Sbjct: 121 DLFEAIVGAIYLDSGITSASKFVMRAYKERLKNLDIENFDKDYKTIFQELIQKKHKTSPI 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           YK       +H+  F   V ++    A G+  SK+ AE  AA + L + 
Sbjct: 181 YKSYEYYDNNHE-MFKSEVYVNDKNFALGVGKSKKEAETNAAKKALDKI 228


>gi|290957120|ref|YP_003488302.1| ribonuclease III [Streptomyces scabiei 87.22]
 gi|260646646|emb|CBG69743.1| putative ribonuclease III [Streptomyces scabiei 87.22]
          Length = 272

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 24  LEGRLGYKLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 82

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R LDL SFIR+             SI AD +E++I A+
Sbjct: 83  PEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 142

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     KS             +   A  G+     +   +GPDH
Sbjct: 143 YLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 202

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 203 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRAI 240


>gi|257063721|ref|YP_003143393.1| ribonuclease III [Slackia heliotrinireducens DSM 20476]
 gi|256791374|gb|ACV22044.1| ribonuclease III [Slackia heliotrinireducens DSM 20476]
          Length = 300

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 72/219 (32%), Positives = 106/219 (48%), Gaps = 2/219 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
           +    ++ IG  F N  +L  A+TH S +     + SYERLEFLGD ILG +++   F+ 
Sbjct: 11  KIQRAQEIIGTQFGNTDILLHAITHPSATEGKPVKLSYERLEFLGDSILGAIVANEAFHR 70

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG L+    +LVS  + S+VA EL     I   S  +      + S   +V E++
Sbjct: 71  YPDLDEGGLTRIKVALVSGASLSKVAAELGFEDIIVFGSSEQGTGKRGLHSALENVYEAV 130

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +AALYLD G+E A +FV K    R  +      +      +    + G+TP YK+    G
Sbjct: 131 VAALYLDQGMEGARSFVMKTLVPRMSRELATEPENPKSALQEKLQEEGITPTYKLVETQG 190

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P HD  F   V     A A GM  +K+ +E  AA   L+
Sbjct: 191 PPHDRTFVSQVFAGMKALASGMGRTKKESESQAAKAALE 229


>gi|188533138|ref|YP_001906935.1| ribonuclease III [Erwinia tasmaniensis Et1/99]
 gi|238691985|sp|B2VI46|RNC_ERWT9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|188028180|emb|CAO96038.1| Ribonuclease III [Erwinia tasmaniensis Et1/99]
          Length = 226

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 112/213 (52%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINKLQRKLGYTFTHQELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGYRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQAVEQLILSWYASRLDQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGTGSSRRK 210


>gi|327394842|dbj|BAK12264.1| ribonuclease III Rnc [Pantoea ananatis AJ13355]
          Length = 226

 Score =  125 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F +  LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINKLQRKLGYTFTHSELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEKLILDWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P  G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210


>gi|195332283|ref|XP_002032828.1| GM20991 [Drosophila sechellia]
 gi|194124798|gb|EDW46841.1| GM20991 [Drosophila sechellia]
          Length = 1310

 Score =  125 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 81/223 (36%), Gaps = 6/223 (2%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ HF
Sbjct: 959  LTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1018

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG LS+  +SLV+  T + V  +L +  F   ++            +    + +L 
Sbjct: 1019 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKFAVYANPKADLKTKDRADLLEAFLGALY 1078

Query: 124  A----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
                               +  +   +     K +                  P YKV  
Sbjct: 1079 VDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVVE 1138

Query: 180  RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1139 ASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1181



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE+ IGY F NR LL+ ALTH S   +Y  +
Sbjct: 727 LDLLEESIGYRFKNRYLLQLALTHPSYKENYGTN 760



 Score = 43.0 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%)

Query: 36  YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95
                ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A++L L  
Sbjct: 812 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 871

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           F+  +          +    A+  E+L+ AL LDGGI+
Sbjct: 872 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 909


>gi|94497606|ref|ZP_01304175.1| ribonuclease III [Sphingomonas sp. SKA58]
 gi|94423023|gb|EAT08055.1| ribonuclease III [Sphingomonas sp. SKA58]
          Length = 227

 Score =  125 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 93/215 (43%), Positives = 123/215 (57%), Gaps = 3/215 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+  IG A  NR+  E+ALTH S       +YERLEFLGDRILGLLI   +F+ F    E
Sbjct: 14  LKDLIGRAPHNRATFEQALTHGSA---KPVNYERLEFLGDRILGLLIGEWVFDRFADEPE 70

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS R+N+LVS ETC+ +AR   +   + +    R D  +   ++  DV+E+LI ALYL
Sbjct: 71  GKLSRRYNALVSGETCADIARTAGVPKHLILGKQARDDGAADSDNVLGDVMEALIGALYL 130

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           +GG++ A   V + W  R        R  K+ LQEWA A     PEY++T RSGP H  R
Sbjct: 131 EGGLDEARALVRRLWGNRVDTQTSAPRHPKSALQEWAAANRRKPPEYQMTDRSGPQHALR 190

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           FTV V I G   A     SK+ AE  AA  +L++ 
Sbjct: 191 FTVAVSIKGAGEASATGASKQEAETAAAKALLEKL 225


>gi|146312695|ref|YP_001177769.1| ribonuclease III [Enterobacter sp. 638]
 gi|189043313|sp|A4WDD8|RNC_ENT38 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|145319571|gb|ABP61718.1| RNAse III [Enterobacter sp. 638]
          Length = 226

 Score =  125 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 109/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F +  LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQHHELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEQLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|17137682|ref|NP_477436.1| drosha [Drosophila melanogaster]
 gi|4868118|gb|AAD31170.1| ribonuclease [Drosophila melanogaster]
 gi|7304132|gb|AAF59169.1| drosha [Drosophila melanogaster]
 gi|68051279|gb|AAY84903.1| LD20030p [Drosophila melanogaster]
          Length = 1327

 Score =  125 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 6/223 (2%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ HF
Sbjct: 975  LTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1034

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG LS+  +SLV+  T + V  +L +  +   ++            +    + +L 
Sbjct: 1035 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLKTKDRADLLEAFLGALY 1094

Query: 124  A----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
                               +  +   +     K +                  P YKV  
Sbjct: 1095 VDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVVE 1154

Query: 180  RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1155 ASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1197



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE+ IGY F NR LL+ ALTH S   +Y  +
Sbjct: 743 LDLLEESIGYRFKNRYLLQLALTHPSYKENYGTN 776



 Score = 43.0 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%)

Query: 36  YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95
                ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A++L L  
Sbjct: 828 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 887

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           F+  +          +    A+  E+L+ AL LDGGI+
Sbjct: 888 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 925


>gi|330957807|gb|EGH58067.1| ribonuclease III [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 229

 Score =  125 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 78/215 (36%), Positives = 110/215 (51%), Gaps = 6/215 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF 
Sbjct: 1   MSVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+
Sbjct: 58  RFPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD G+E A   V  +              +D KT LQE+  ++    P Y+V  
Sbjct: 118 LIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVD 177

Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
             G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 178 IQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212


>gi|194863666|ref|XP_001970553.1| GG23313 [Drosophila erecta]
 gi|190662420|gb|EDV59612.1| GG23313 [Drosophila erecta]
          Length = 1329

 Score =  125 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 6/223 (2%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ HF
Sbjct: 974  LTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1033

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG LS+  +SLV+  T + V  +L +  +   ++            +    + +L 
Sbjct: 1034 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLKTKDRADLLEAFLGALY 1093

Query: 124  A----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
                               +  +   +     K +                  P YKV  
Sbjct: 1094 VDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVVE 1153

Query: 180  RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1154 ASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1196



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE+ IGY F NR LL+ ALTH S   +Y  +
Sbjct: 742 LDLLEESIGYRFKNRYLLQLALTHPSYKENYGTN 775



 Score = 43.0 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%)

Query: 36  YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95
                ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A++L L  
Sbjct: 827 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 886

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           F+  +          +    A+  E+L+ AL LDGGI+
Sbjct: 887 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 924


>gi|213964554|ref|ZP_03392754.1| ribonuclease III [Corynebacterium amycolatum SK46]
 gi|213952747|gb|EEB64129.1| ribonuclease III [Corynebacterium amycolatum SK46]
          Length = 242

 Score =  125 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 4/221 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
            A+ ++ L  ++G      SL + ALTH S ++      + ERLEFLGD +LG+ ++  L
Sbjct: 18  EAVDHAPLLDKLGVELPEESL-KLALTHRSFANENGMLTNNERLEFLGDAVLGVCVAEEL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F    E ++S     +V+    + +AR + L   I +    +    +   SI AD  
Sbjct: 77  YRRFPDRAEQDISKMRAGVVNMYALADLARSIGLGEHILLGRGEKATGGADKHSILADTT 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+L+ A+YL  G EVA   V + + Q       + R      L +   A   +       
Sbjct: 137 EALLGAIYLQHGFEVARETVLRLFNQMIDDAPTESRGRDWKTLLQERLAAKQLPAAEYTV 196

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             +GPDHD  F V V + G+    G   +K+ AE  AA + 
Sbjct: 197 RTTGPDHDLTFYVDVLVDGVVKGSGTGATKKEAEMHAAHQA 237


>gi|300717987|ref|YP_003742790.1| ribonuclease III [Erwinia billingiae Eb661]
 gi|299063823|emb|CAX60943.1| Ribonuclease III [Erwinia billingiae Eb661]
          Length = 226

 Score =  125 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVITRLQRKLGYTFTHQELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGYRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     + +++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQNVEKLILEWYASRLEQISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGTGSSRRK 210


>gi|332184579|gb|AEE26833.1| Ribonuclease III [Francisella cf. novicida 3523]
          Length = 230

 Score =  125 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 9/222 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS     +GY F + +LL +ALTH S     +++YERLEFLGD +L  +I+ +L+  F  
Sbjct: 5   YSRFYNILGYKFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFTD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T +Q+A  L +  +I       +        I  DV E++I A
Sbjct: 62  LDEGKLSQLRSKLVKGATLAQLASSLKMDEYII--LGASEQGGHKREKILEDVFEAVIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD         + ++++             +D+K++LQE         PEY +    G
Sbjct: 120 IYLDSDFATVKKVILRWYQPIILSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETIEG 179

Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
            DH+  FTVV     L    +    S++ AEQ AA ++++  
Sbjct: 180 KDHEQEFTVVAMSKDLNLQVKAQGTSRKKAEQKAAEKMIEML 221


>gi|255325275|ref|ZP_05366381.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
 gi|255297840|gb|EET77151.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
          Length = 256

 Score =  125 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 6/224 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           + ++ L + +G        L  ALTH S ++      + ERLEFLGD +LGL +++ L+ 
Sbjct: 20  VDHTPLLESLGVDLQ-PEHLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVASQLYI 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + S  E ++S    S+VS    S +ARE++L   I +    +        SI AD  E+
Sbjct: 79  TYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +  A+Y + G E A   + + + ++   +       D KT LQE         P Y  T 
Sbjct: 139 IFGAIYREHGFETARDVILRLFAEKIDNATVSGRHLDWKTTLQELCAELKAPMPVYSATS 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +GP+HD  F  V  ++GL    G+  +K+ AEQ AA E  +  
Sbjct: 199 -TGPEHDQTFNAVATVAGLTVGNGVGHNKKLAEQQAAQEACQTL 241


>gi|85057423|ref|YP_456339.1| dsRNA-specific ribonuclease [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|123518419|sp|Q2NJY3|RNC_AYWBP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|84789528|gb|ABC65260.1| dsRNA-specific ribonuclease [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 237

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIST 57
           M  ++   L + +     N  L ++ALTHSS S+     QE  ERLEFLGD I+GLL++ 
Sbjct: 1   MKNIQI--LFQTLNIFPKNLVLYKQALTHSSYSNEQTPPQEDNERLEFLGDAIVGLLMAD 58

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+       EG ++ +    V  ++ +  A++++L +++ +    + +       I AD
Sbjct: 59  YLY-SQSKEDEGIMTKKRAQAVCEKSLTIYAQKIELQNYLLLGKGEK-NKDFNAKGIMAD 116

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
             E+L  A+YLD G   A             K+            +        T +YK+
Sbjct: 117 TFEALFGAIYLDLGYLTAKKVFHNIVLPHLAKTIYIIDFKTQ--LQEIVQSEKKTIQYKI 174

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               GP H   F   V +       G   +K++AEQ AA + L +
Sbjct: 175 VQEQGPAHSKNFVAEVYLEKNLLGTGEGSTKKSAEQKAAQQALSK 219


>gi|259907677|ref|YP_002648033.1| ribonuclease III [Erwinia pyrifoliae Ep1/96]
 gi|224963299|emb|CAX54784.1| Ribonuclease III [Erwinia pyrifoliae Ep1/96]
 gi|283477528|emb|CAY73444.1| RNase III, ds RNA [Erwinia pyrifoliae DSM 12163]
 gi|310764815|gb|ADP09765.1| ribonuclease III [Erwinia sp. Ejp617]
          Length = 226

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINKLQRKLGYTFTHQELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEQLILSWYASRLDQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
              G  HD  FT+  ++SG+A P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMADPVVGTGSSRRK 210


>gi|328466160|gb|EGF37317.1| ribonuclease III [Listeria monocytogenes 1816]
          Length = 222

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 63/213 (29%), Positives = 106/213 (49%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S
Sbjct: 1   MN--QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LFN +    EG ++    ++V   +  + A  +  + ++R+     K       ++ A
Sbjct: 59  NYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEY 175
           DV ES I ALYLD GI+   TF+++    +    +     D KT+LQE       V  EY
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            +   +GP H+  F   V ++G    +G    K
Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKGSGRQK 211


>gi|294631623|ref|ZP_06710183.1| ribonuclease III [Streptomyces sp. e14]
 gi|292834956|gb|EFF93305.1| ribonuclease III [Streptomyces sp. e14]
          Length = 275

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 32  LEGRLGYRLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 90

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R LDL +FIR+             SI AD +E++I A+
Sbjct: 91  PEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 150

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     KS             +   A  G+     +   +GPDH
Sbjct: 151 YLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 210

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 211 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRAI 248


>gi|238063283|ref|ZP_04607992.1| ribonuclease III [Micromonospora sp. ATCC 39149]
 gi|237885094|gb|EEP73922.1| ribonuclease III [Micromonospora sp. ATCC 39149]
          Length = 296

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 103/221 (46%), Gaps = 7/221 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE   G +  +  LLE+ALTH S ++      + ERLEFLGD +LG++I+T LF++    
Sbjct: 14  LEAAFGVSL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDL 72

Query: 67  KEGELSVRFNSLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            EG+L+    S+V+    + VAR L      +++ +             SI AD +E+L+
Sbjct: 73  PEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEESTGGRDKASILADTLEALL 132

Query: 124 AALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A+YL  G++ A   + + +    A  +G+          +   A  G+         +G
Sbjct: 133 GAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPEYRIEGTG 192

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH   FT  V ++G         SK+ AEQ AA    +  
Sbjct: 193 PDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAESAWREL 233


>gi|322420696|ref|YP_004199919.1| ribonuclease III [Geobacter sp. M18]
 gi|320127083|gb|ADW14643.1| ribonuclease III [Geobacter sp. M18]
          Length = 224

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 79/210 (37%), Positives = 120/210 (57%), Gaps = 2/210 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDS 65
             LE ++GY F+NR LLE+ALTH + ++    +  +RLEF GD +L  L+S LL   F  
Sbjct: 2   EKLEGKLGYRFSNRELLEEALTHRTYANEAGGKDNQRLEFFGDAVLDFLLSDLLLQRFPD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           ++EGEL+    +LV   + +++A  L+L + +R+     K       S+ AD  E+L+AA
Sbjct: 62  SREGELTKMRAALVDEVSLARIAAGLELGAALRLGRGEEKGGGRQKRSLLADAFEALLAA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LYLDGG++ A   V + ++    +      RDAKTELQE A    G  P Y++   +GPD
Sbjct: 122 LYLDGGVDTARRVVHELFEPLLCRPEILCGRDAKTELQERARLLRGKLPRYQLKQVTGPD 181

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           HD RFTV + +      +G+  +K+ AEQ 
Sbjct: 182 HDRRFTVEIFLGSELMGEGVGRTKKEAEQD 211


>gi|292489090|ref|YP_003531977.1| RNase III, ds RNA [Erwinia amylovora CFBP1430]
 gi|292900214|ref|YP_003539583.1| Ribonuclease III [Erwinia amylovora ATCC 49946]
 gi|291200062|emb|CBJ47188.1| Ribonuclease III [Erwinia amylovora ATCC 49946]
 gi|291554524|emb|CBA22094.1| RNase III, ds RNA [Erwinia amylovora CFBP1430]
 gi|312173248|emb|CBX81503.1| RNase III, ds RNA [Erwinia amylovora ATCC BAA-2158]
          Length = 226

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINKLQRKLGYTFTHQELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGYRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQRVEQLILSWYASRLDQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
              G  HD  FT+  ++SG+A P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMADPVVGTGSSRRK 210


>gi|182414805|ref|YP_001819871.1| ribonuclease III [Opitutus terrae PB90-1]
 gi|177842019|gb|ACB76271.1| Ribonuclease III [Opitutus terrae PB90-1]
          Length = 250

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 99/225 (44%), Gaps = 6/225 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62
            + L+ R+ Y F + +LLE+A+TH+S      +   S +RLEFLGD +L L+++  LF  
Sbjct: 24  LAALQTRLIYTFRDPALLERAVTHTSYLPENPDIAESNQRLEFLGDAVLQLILTEALFEL 83

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F   +EG LS R  +L       ++AREL L   + + S          +S   D  E+L
Sbjct: 84  FPGDREGPLSRRRAALTKGAFLVELARELQLDRCLLLGSSEEASGGRTRSSALEDAFEAL 143

Query: 123 IAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQE-WAHAKFGVTPEYKVTF 179
           + ALYLD  + +    V          L       + K  LQE            Y+VT 
Sbjct: 144 VGALYLDSDLALTRRIVLGLYGDLPSRLSGVVNEENPKGRLQELIQPEYGNQALRYEVTG 203

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             G DH   + V V +       G   SK+ AE+ AA   L+   
Sbjct: 204 IEGEDHARAYEVAVFLHDRVLGSGRGPSKKLAEEAAARVALETLK 248


>gi|118587506|ref|ZP_01544930.1| ribonuclease III [Oenococcus oeni ATCC BAA-1163]
 gi|118431957|gb|EAV38699.1| ribonuclease III [Oenococcus oeni ATCC BAA-1163]
          Length = 243

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 98/227 (43%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M+ ++   +++  G  FAN+ LL +A T  +  + + E     Y+RLEFLGD ++ L+++
Sbjct: 13  MNNIQ-KGIKEDFGIEFANQDLLLEAFTQGNYLNEHPEEKGRDYQRLEFLGDSVMQLIVA 71

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +   +EG+L+    ++V +++ S  AR      +IR+             S+  
Sbjct: 72  DYLFTRYPDWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELSGARNRDSLLE 131

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D+ E+ I ALY D G +   TF++K +     +             +    K G      
Sbjct: 132 DIWEAFIGALYKDQGAKAVFTFLNKAFFPAIDEGFFEEFIDYKSKLQELLQKAGSVDIEY 191

Query: 177 VTFRSG--PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                       P F V V ++  A   G   S + AE+ AA +  +
Sbjct: 192 KVENEDLSDPQKPHFEVTVFVNDKAIGSGSGRSIKIAEKRAAKKAYQ 238


>gi|315502406|ref|YP_004081293.1| ribonuclease iii [Micromonospora sp. L5]
 gi|315409025|gb|ADU07142.1| ribonuclease III [Micromonospora sp. L5]
          Length = 267

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 103/221 (46%), Gaps = 7/221 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE   G +  +  LLE+ALTH S ++      + ERLEFLGD +LG++I+T LF++    
Sbjct: 14  LEAAFGVSL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDL 72

Query: 67  KEGELSVRFNSLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            EG+L+    S+V+    + VAR L      +++ +             SI AD +E+L+
Sbjct: 73  PEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEEATGGRDKASILADTLEALL 132

Query: 124 AALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A+YL  G++ A   + + +    A  +G+          +   A  G+         +G
Sbjct: 133 GAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPEYRIEGTG 192

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH   FT  V ++G         SK+ AEQ AA    +  
Sbjct: 193 PDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAESAWRTL 233


>gi|302865861|ref|YP_003834498.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
 gi|302568720|gb|ADL44922.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
          Length = 267

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 103/221 (46%), Gaps = 7/221 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE   G +  +  LLE+ALTH S ++      + ERLEFLGD +LG++I+T LF++    
Sbjct: 14  LEAAFGVSL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDL 72

Query: 67  KEGELSVRFNSLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            EG+L+    S+V+    + VAR L      +++ +             SI AD +E+L+
Sbjct: 73  PEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEEATGGRDKASILADTLEALL 132

Query: 124 AALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A+YL  G++ A   + + +    A  +G+          +   A  G+         +G
Sbjct: 133 GAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPEYRIEGTG 192

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH   FT  V ++G         SK+ AEQ AA    +  
Sbjct: 193 PDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAESAWRTL 233


>gi|328885312|emb|CCA58551.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
          Length = 270

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 4/214 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 20  LEGRLGYQLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 78

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   + V REL+L SFIR+             SI AD +E++I A+
Sbjct: 79  PEGQLAKLRAAVVNSRALADVGRELELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 138

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     KS             +   A  G+     +    GPDH
Sbjct: 139 YLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLVSEEGPDH 198

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +  FT    + G++   G   SK+ AEQ AA   
Sbjct: 199 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESA 232


>gi|305681508|ref|ZP_07404315.1| ribonuclease III [Corynebacterium matruchotii ATCC 14266]
 gi|305659713|gb|EFM49213.1| ribonuclease III [Corynebacterium matruchotii ATCC 14266]
          Length = 259

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 4/225 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
            + ++ L   +G    +  +L  ALTH S ++      + ERLEFLGD +LGL ++  LF
Sbjct: 20  KVDHAPLLAALGVDLPH-DILTLALTHRSFANENGMLPNNERLEFLGDAVLGLSVAGKLF 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  E ++S    S+VS    + +ARE+ L  +I +             SI AD  E
Sbjct: 79  EQYPTRPESDISKMRASIVSRYGLADIAREIGLGQYILLGKGELLTDGRNKDSILADTTE 138

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +L+ A+Y   G ++A   V + +  +   +         +            P       
Sbjct: 139 ALLGAIYRIHGFDIARDVVLRLFAHKISHAQATALHQDWKTSLQERLAEYKLPMPVYEAT 198

Query: 181 S-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           S GP+H+  FT  V + G    +G   +K+ AEQ  A + L+   
Sbjct: 199 SVGPEHEQVFTASVNVLGRIIGEGTGTNKKLAEQAGAHQALELLN 243


>gi|225021993|ref|ZP_03711185.1| hypothetical protein CORMATOL_02025 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945279|gb|EEG26488.1| hypothetical protein CORMATOL_02025 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 259

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 4/225 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
            + ++ L   +G    +  +L  ALTH S ++      + ERLEFLGD +LGL ++  LF
Sbjct: 20  KVDHAPLLAALGVDLPH-DILTLALTHRSFANENGMLPNNERLEFLGDAVLGLSVAGKLF 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  E ++S    S+VS    + +ARE+ L  +I +             SI AD  E
Sbjct: 79  EQYPTRPESDISKMRASIVSRYGLADIAREIGLGQYILLGKGELLTDGRNKDSILADTTE 138

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +L+ A+Y   G ++A   V + +  +   +         +            P       
Sbjct: 139 ALLGAIYRIHGFDIARDVVLRLFAHKISHAQATALHQDWKTSLQERLAEYKLPMPVYEAT 198

Query: 181 S-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           S GP+H+  FT  V + G    +G   +K+ AEQ  A + L+   
Sbjct: 199 SVGPEHEQVFTASVNVLGRIIGEGTGTNKKLAEQAGAHQALELLN 243


>gi|241668007|ref|ZP_04755585.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876541|ref|ZP_05249251.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842562|gb|EET20976.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 230

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 9/222 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS L K +GY+F N +LL +ALTH S     +++YERLEFLGD ILG +I+ +L+  F  
Sbjct: 5   YSRLYKILGYSFKNYTLLVRALTHRS---KTKKNYERLEFLGDSILGFVIAEVLYMEFPD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T + +A    L  +I       +        I  DV E++I A
Sbjct: 62  LAEGKLSQIRSKLVKGVTLANLALNFKLDEYII--LGASEQGGHKREKILEDVFEAIIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD         +  ++K             +D+K++LQE         PEY +    G
Sbjct: 120 IYLDSDFATVKKVIVNWYKPVISTLNLDDVKVKDSKSKLQEILLQNGLSLPEYSIETIDG 179

Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
            DH+  FTV    + L    +    S++ AEQ AA ++++  
Sbjct: 180 KDHEQEFTVKALSNDLNIKVRAKGTSRKKAEQKAAEKMIQIL 221


>gi|167627437|ref|YP_001677937.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|189043314|sp|B0TXH8|RNC_FRAP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|167597438|gb|ABZ87436.1| Ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 230

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 9/222 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS L K +GY+F N +LL +ALTH S     +++YERLEFLGD ILG +I+ +L+  F  
Sbjct: 5   YSRLYKILGYSFKNYTLLVRALTHRS---KTKKNYERLEFLGDSILGFVIAEVLYMEFPD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T + +A    L  +I       +        I  DV E++I A
Sbjct: 62  LAEGKLSQIRSKLVKGVTLANLALNFKLDEYII--LGASEQGGHKREKILEDVFEAIIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD         +  ++K             +D+K++LQE         PEY +    G
Sbjct: 120 IYLDSDFATVKKVIVNWYKPVISTLNLDDVKVKDSKSKLQEILLQNGLSLPEYSIETIDG 179

Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
            DH+  FTV    + L    +    S++ AEQ AA ++++  
Sbjct: 180 KDHEQEFTVKALSNDLNIEVRAKGTSRKKAEQKAAEKMIQIL 221


>gi|291454392|ref|ZP_06593782.1| ribonuclease III [Streptomyces albus J1074]
 gi|291357341|gb|EFE84243.1| ribonuclease III [Streptomyces albus J1074]
          Length = 265

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 25  LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 83

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V+R L+L SFIR+             SI AD +E++I A+
Sbjct: 84  PEGQLAKLRAAVVNSRALAEVSRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 143

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G+E AG  V + +     KS             +   A  G+     +   +GPDH
Sbjct: 144 YLDQGLEAAGELVHRLFDPLIEKSSSLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 203

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 204 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRAI 241


>gi|239982550|ref|ZP_04705074.1| ribonuclease III [Streptomyces albus J1074]
          Length = 260

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 20  LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 78

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V+R L+L SFIR+             SI AD +E++I A+
Sbjct: 79  PEGQLAKLRAAVVNSRALAEVSRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 138

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G+E AG  V + +     KS             +   A  G+     +   +GPDH
Sbjct: 139 YLDQGLEAAGELVHRLFDPLIEKSSSLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 198

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 199 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRAI 236


>gi|149192067|ref|ZP_01870292.1| ribonuclease III [Vibrio shilonii AK1]
 gi|148834092|gb|EDL51104.1| ribonuclease III [Vibrio shilonii AK1]
          Length = 225

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 107/213 (50%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LEK++GY F +  LL  ALTH S         ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-SIERLEKKLGYHFNDSELLMLALTHRSA---NGNHNERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE  L  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGNTLAELGREFVLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  +E+    V  ++  R         ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDVEMVRKIVLSWYMTRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  H+  FTV  E++G+  P  G   S+R 
Sbjct: 177 NIKGEAHNQEFTVSCEVAGVDEPVIGRGTSRRK 209


>gi|194757473|ref|XP_001960989.1| GF13644 [Drosophila ananassae]
 gi|190622287|gb|EDV37811.1| GF13644 [Drosophila ananassae]
          Length = 1303

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 86/220 (39%), Gaps = 3/220 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             +  E+ IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ HF
Sbjct: 955  LTKFEESIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1014

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG LS+  +SLV+  T + V  +L +  +    +DL+    + +       +    
Sbjct: 1015 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPQYANPKADLKTKDRADLLEAFLGALYVDK 1074

Query: 124  AALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
              LY +          +  +   +     K +                  P YKV   SG
Sbjct: 1075 GLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVVEASG 1134

Query: 183  PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            P +   + V V       A     S + AE  AA + L+ 
Sbjct: 1135 PTNTRVYKVAVYFRSKRLATSNGSSIQQAEMNAAKQALEN 1174



 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE+ IG+ F NR LL+ ALTH S   +Y  +
Sbjct: 723 LDLLEESIGHRFKNRYLLQLALTHPSYKENYGTN 756



 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%)

Query: 36  YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95
                ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A++L L  
Sbjct: 808 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 867

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           F+  +          +    A+  E+L+ AL LDGGI+
Sbjct: 868 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 905


>gi|154493472|ref|ZP_02032792.1| hypothetical protein PARMER_02811 [Parabacteroides merdae ATCC
           43184]
 gi|154086682|gb|EDN85727.1| hypothetical protein PARMER_02811 [Parabacteroides merdae ATCC
           43184]
          Length = 301

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 110/230 (47%), Gaps = 11/230 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M+   YS+L K +G+   N  L E+A  H S S    +    + ERLEFLGD +L  +++
Sbjct: 15  MNKEPYSSLYKILGFYPDNIHLYEQAFLHKSSSVESGDGRWLNNERLEFLGDAVLDAVVA 74

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +++ HF + +EG L+   + +V  ET ++VA EL L   +  S+ L          +  
Sbjct: 75  DIVYKHFQNKREGFLTNTRSKIVQRETMNRVAVELGLDKMVVYSAKLSSHNN----HMYG 130

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTP 173
           + +E+LI A+YLD G EV   F+     ++ +      +   + K+ L EW+        
Sbjct: 131 NALEALIGAIYLDQGYEVCYNFIQNVLIKKHVNLETIARKEVNFKSSLIEWSQKNKLEIS 190

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +   +  D +P F   V +S      G+  SK+ ++Q AA   +K+ 
Sbjct: 191 FDLIESFTDNDGNPVFQTGVTLSDTQIGVGIGYSKKESQQSAAKMAIKKL 240


>gi|116490531|ref|YP_810075.1| dsRNA-specific ribonuclease [Oenococcus oeni PSU-1]
 gi|290889932|ref|ZP_06553019.1| hypothetical protein AWRIB429_0409 [Oenococcus oeni AWRIB429]
 gi|122277282|sp|Q04GL2|RNC_OENOB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116091256|gb|ABJ56410.1| RNAse III [Oenococcus oeni PSU-1]
 gi|290480542|gb|EFD89179.1| hypothetical protein AWRIB429_0409 [Oenococcus oeni AWRIB429]
          Length = 231

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M+ ++   +++  G  FAN+ LL +A T  +  + + E     Y+RLEFLGD ++ L+++
Sbjct: 1   MNNIQ-KGIKEDFGIEFANQDLLLEAFTQGNYLNEHPEEKGRDYQRLEFLGDSVMQLIVA 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  + + +EG+L+    ++V +++ S  AR      +IR+             S+  
Sbjct: 60  DYLFTRYPAWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELSGARNRDSLLE 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D+ E+ I ALY D G +   TF++K +     +             +    K G      
Sbjct: 120 DIWEAFIGALYKDQGAKAVFTFLNKAFFPAIDEGFFEEFIDYKSKLQELLQKAGSVDIEY 179

Query: 177 VTFRSG--PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                       P F V V ++  A   G   S + AE+ AA +  +
Sbjct: 180 KVENEDLSDPQKPHFEVTVFVNDKAIGSGSGRSIKIAEKRAAKKAYQ 226


>gi|258544604|ref|ZP_05704838.1| ribonuclease III [Cardiobacterium hominis ATCC 15826]
 gi|258520146|gb|EEV89005.1| ribonuclease III [Cardiobacterium hominis ATCC 15826]
          Length = 221

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 73/217 (33%), Positives = 113/217 (52%), Gaps = 7/217 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ + Y F + +LL +ALTH S S    +  ERLEFLGD +L  + S  ++ +     E
Sbjct: 4   LEQALNYRFTDTALLTRALTHRSHS---AKHNERLEFLGDALLETISSIWIYQNRRDVPE 60

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+    ++VS E  + +AR L+L   + + S   K   +   SI AD VE+LIAA+YL
Sbjct: 61  GDLTRLRATIVSGENLAAIARRLNLGQHLHLGSGELKSGGARRNSILADAVEALIAAVYL 120

Query: 129 DGG---IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D      E     + K       ++    +DAKT+LQE+   +    P+Y++T  SGP+H
Sbjct: 121 DSDYPTCEHITLALLKDDLSALPQTATRLKDAKTQLQEYLQGRGLPLPDYQITEESGPEH 180

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              F +         A     S++ AEQ AAA++L +
Sbjct: 181 AREFQIEATSGDYR-AIAHGSSRKKAEQQAAADLLAQ 216


>gi|282861354|ref|ZP_06270419.1| ribonuclease III [Streptomyces sp. ACTE]
 gi|282564012|gb|EFB69549.1| ribonuclease III [Streptomyces sp. ACTE]
          Length = 274

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/218 (30%), Positives = 106/218 (48%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 23  LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 81

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R LDL SFIR+             SI AD +E++I A+
Sbjct: 82  PEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 141

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     +S             +   A   +     +   +GPDH
Sbjct: 142 YLDQGLDAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLVTETGPDH 201

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 202 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWREI 239


>gi|297202624|ref|ZP_06920021.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
 gi|197713199|gb|EDY57233.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
          Length = 272

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+N     
Sbjct: 19  LEGRLGYKLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYNTHPDL 77

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R LDL SFIR+             SI AD +E++I A+
Sbjct: 78  PEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 137

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     KS             +   A  G+     +   +GPDH
Sbjct: 138 YLDQGLKAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 197

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 198 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRSI 235


>gi|302342152|ref|YP_003806681.1| ribonuclease III [Desulfarculus baarsii DSM 2075]
 gi|301638765|gb|ADK84087.1| ribonuclease III [Desulfarculus baarsii DSM 2075]
          Length = 237

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 86/228 (37%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 1   MSALRY---STLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLL 54
           M   R      L  ++G+ F++ + L++AL HSS  H       S ERLEFLGD +L L+
Sbjct: 1   MDQTRLDMLKQLADQVGHGFSDWTALDEALRHSSFVHENPQRGPSNERLEFLGDAVLELV 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           ++  LF  FD A EG+LS   +S+V+    ++ AR++DL   I +    +       TSI
Sbjct: 61  VTQELFLRFDQASEGQLSRARSSVVNEARLAEAARQIDLGPCILLGKGEQGQGGQEKTSI 120

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVT 172
            AD +E+++AA+YLDGG+E A   V          +     RRD KT LQE       +T
Sbjct: 121 LADALEAVLAAVYLDGGLEAARDCVLALLGPLDERVIDRAPRRDYKTMLQERVQEDLRLT 180

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           P Y+    SGPDHD  F+V +EI+    A G   SK+ AEQ AA   L
Sbjct: 181 PRYRTIDESGPDHDKTFSVSIEINDRQLAMGAGKSKKEAEQNAARRGL 228


>gi|297191816|ref|ZP_06909214.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
 gi|197722006|gb|EDY65914.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
          Length = 296

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 111/225 (49%), Gaps = 4/225 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 9   NASSHTLLEGRLGYQLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 67

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SFIR+             SI AD +
Sbjct: 68  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 127

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVT 178
           E++I A+YLD G++ A   V + +     KS             +   A  G+     + 
Sbjct: 128 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLV 187

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +GPDH+  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 188 TETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWREI 232


>gi|21223928|ref|NP_629707.1| ribonuclease III [Streptomyces coelicolor A3(2)]
 gi|256784973|ref|ZP_05523404.1| ribonuclease III [Streptomyces lividans TK24]
 gi|7531197|sp|Q9ZBQ7|RNC_STRCO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|4007731|emb|CAA22415.1| ribonuclease III [Streptomyces coelicolor A3(2)]
          Length = 272

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 30  LEGRLGYQLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 88

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R L+L SFIR+             SI AD +E++I A+
Sbjct: 89  PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 148

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     KS             +   A  G+     +   +GPDH
Sbjct: 149 YLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 208

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 209 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRSI 246


>gi|289768866|ref|ZP_06528244.1| ribonuclease III [Streptomyces lividans TK24]
 gi|289699065|gb|EFD66494.1| ribonuclease III [Streptomyces lividans TK24]
          Length = 276

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 34  LEGRLGYQLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 92

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R L+L SFIR+             SI AD +E++I A+
Sbjct: 93  PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 152

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     KS             +   A  G+     +   +GPDH
Sbjct: 153 YLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 212

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 213 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRSI 250


>gi|313224789|emb|CBY20581.1| unnamed protein product [Oikopleura dioica]
          Length = 538

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 7/225 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           R + LE+ +G  F N  LL KALT  +   +   +   +RLEFLGD I   L +  LF H
Sbjct: 210 RCAELEELLGVKFKNIRLLAKALTLKNVKYNDITKGHNQRLEFLGDAICNFLAAEYLFKH 269

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++   ++V A T + VA+++ L  F+     L  D   +   I AD++ES 
Sbjct: 270 FPLHHEGHLTLLRCTMVGAPTQALVAQQIGLDKFVISRQSLSHDKMGWKQKILADLMESF 329

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I AL++D GI     F+   +  R       +   D K+ LQ+             +   
Sbjct: 330 IGALFIDRGIIAVDVFMKVAFYPRLKHFIMSQVWNDPKSCLQQCCLTLRPEEGTPDLPEY 389

Query: 181 ---SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              +      R+ V V   G    +G   S + AE+ AA + L++
Sbjct: 390 RTTTSNSSKMRYRVEVFFRGERIGEGHGPSIQLAEKFAARKALEK 434



 Score = 43.4 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 1/143 (0%)

Query: 26  ALTHSSISHSYQESY-ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           AL  +S       +Y ER EFLGD +LG ++S  +F+ F +  EG LS+   +LV     
Sbjct: 54  ALLGTSEPKESPINYLERPEFLGDAVLGFVVSVSIFHLFPNLGEGALSMLRCALVCNVHL 113

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           + +A++L L  +              + +  A+  E+++ A+Y+DGG+E     + +   
Sbjct: 114 AALAQKLTLEDYFVYIHSQDLAKREDLNNALANCFEAVLGAIYMDGGLEPVRQLLARVLF 173

Query: 145 QRALKSGKFRRDAKTELQEWAHA 167
                   +       LQ+    
Sbjct: 174 DDKALQRVWLDFPAHPLQQEYPD 196


>gi|302878420|ref|YP_003846984.1| ribonuclease III [Gallionella capsiferriformans ES-2]
 gi|302581209|gb|ADL55220.1| ribonuclease III [Gallionella capsiferriformans ES-2]
          Length = 229

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 112/228 (49%), Gaps = 7/228 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M   + Y+ L +++GY F    LL++ALTH S +    +  ERLEFLGD ILG +I+  L
Sbjct: 1   MRPDKGYTELCRQLGYVFIQPQLLQRALTHRSFA---PDHNERLEFLGDSILGCVIAKHL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++      EG+LS   ++LV   T    A++L+L + +++     K       SI AD V
Sbjct: 58  YSQHPDLTEGDLSRLRSNLVKESTLVLFAQQLNLGAQLKLGEGELKSGGHKRPSILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+L  A+++DGG   A   V   +      +      +DAKT LQE+   +  + P Y V
Sbjct: 118 EALFGAIFIDGGYVAAEAAVLNLFVPYLAKVDMKTLGKDAKTLLQEYLQGRRQLLPVYSV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREG 224
               G  H+  F V   I  L  +  G   S+R AEQ AA    +  G
Sbjct: 178 VDTLGVAHEQLFQVECTIPSLKISTRGAGTSRRNAEQQAALAAYQLIG 225


>gi|242280465|ref|YP_002992594.1| ribonuclease III [Desulfovibrio salexigens DSM 2638]
 gi|242123359|gb|ACS81055.1| ribonuclease III [Desulfovibrio salexigens DSM 2638]
          Length = 234

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
            +S L++ I Y F+    L  ALTHSS ++   E     ERLEFLGD +L L ++  LF 
Sbjct: 4   DFSRLQQGIHYRFSQVKHLATALTHSSWANEQPEPVEDNERLEFLGDAVLELCVTEELFK 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A EG+L+   + LV  ++ + +ARELD+  F+++            +S+ AD +E+
Sbjct: 64  RFKGAHEGQLTKIRSKLVKEKSLATIARELDINDFLKLGRGEEAQGGRNRSSLLADAMEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A++LDGG   A  F+ + +  +   + K    +D K++LQE   A+F   P Y +T 
Sbjct: 124 VIGAVFLDGGYAEAQKFIMRIFANKWPATFKIESSKDFKSKLQEVTQARFKERPTYVLTG 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP+H+  F V + +           S + AEQ AAA+ L   
Sbjct: 184 TKGPEHEKIFMVNLNLPDGKSFDSEGSSLKKAEQTAAAKALDYL 227


>gi|198459728|ref|XP_001361471.2| GA21287 [Drosophila pseudoobscura pseudoobscura]
 gi|198136788|gb|EAL26049.2| GA21287 [Drosophila pseudoobscura pseudoobscura]
          Length = 1292

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 81/224 (36%), Gaps = 6/224 (2%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ H
Sbjct: 939  DLTKFEDSIGLKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLISSEYLYRH 998

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L +  +   ++            +    + SL
Sbjct: 999  FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTKYAVYANPKADLKTKDRADLLEAFLGSL 1058

Query: 123  IA----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
                                +  +   +     K +                  P YKV 
Sbjct: 1059 YVDKGLLFCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVV 1118

Query: 179  FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1119 EASGPTNTRVYKVAVYFRSKRLATSSGASIQQAEMNAAKQALEN 1162



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE+ IGY F NR LL+ ALTH S   +Y  +
Sbjct: 708 LDLLEESIGYQFKNRYLLQLALTHPSYKENYGTN 741



 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%)

Query: 36  YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95
                ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A++L L  
Sbjct: 793 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 852

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           F+  +          +    A+  E+L+ AL LDGGI+
Sbjct: 853 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 890


>gi|90416440|ref|ZP_01224371.1| ribonuclease III [marine gamma proteobacterium HTCC2207]
 gi|90331639|gb|EAS46867.1| ribonuclease III [marine gamma proteobacterium HTCC2207]
          Length = 225

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            A     L+ R+ Y F++  LL  AL+H S       + ERLEFLGD +LG+ IS+ LF 
Sbjct: 1   MASNAKQLQDRLQYQFSDPQLLTLALSHRSCG---SNNNERLEFLGDAVLGMAISSFLFQ 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS   + +V AE+ +++AR+LDL   + +     K       SI  D VE+
Sbjct: 58  RFPEAREGDLSRIRSQVVRAESLAEIARKLDLGPELLLGPGEMKSGGHRRDSILGDTVEA 117

Query: 122 LIAALYLDGG--IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A++LD G     A            L      +DAKT LQEW  A+    PEY+V  
Sbjct: 118 LLGAVFLDQGLVAVEACVQNWFGASLNTLTLDTPVKDAKTALQEWLQARGKPLPEYRVVK 177

Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
             G DH   FT+  +I  +   A+    S+R AEQ+ A +++K+ 
Sbjct: 178 TEGEDHSRLFTMSCKIDAVDETAEATASSRRKAEQLVAEKLVKKL 222


>gi|302558162|ref|ZP_07310504.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
 gi|302475780|gb|EFL38873.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
          Length = 272

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 19  LEGRLGYRLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 77

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R L+L SFIR+             SI AD +E++I A+
Sbjct: 78  PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 137

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     KS             +   A  G+     +   +GPDH
Sbjct: 138 YLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVTETGPDH 197

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 198 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRSI 235


>gi|49081844|gb|AAT50322.1| PA0770 [synthetic construct]
          Length = 230

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/216 (35%), Positives = 112/216 (51%), Gaps = 7/216 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS      LE+++GY F +R L+  ALTH S +     + ERLEFLGD IL  +I   LF
Sbjct: 1   MSN-SLDRLERKLGYTFKDRDLMVLALTHRSYA---GRNNERLEFLGDAILNFVIGEALF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +HF  A+EG+LS     LV  ET + +AR  ++  ++R+ S   K       SI AD +E
Sbjct: 57  HHFPQAREGQLSRLRARLVKGETLALLARGFEVGDYLRLGSGELKSGGFRRESILADAME 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD G++ A   +  +   +          +D KT LQE+  ++    P Y+V 
Sbjct: 117 ALIGAIYLDTGMDSARERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRGCDLPRYEVV 176

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213
              G  H   F V  E++ L+    G   S+R AEQ
Sbjct: 177 DIQGEPHCRTFFVDCEVALLSDKTHGHGGSRRIAEQ 212


>gi|15595967|ref|NP_249461.1| ribonuclease III [Pseudomonas aeruginosa PAO1]
 gi|107100231|ref|ZP_01364149.1| hypothetical protein PaerPA_01001254 [Pseudomonas aeruginosa PACS2]
 gi|116048686|ref|YP_792514.1| ribonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893287|ref|YP_002442156.1| ribonuclease III [Pseudomonas aeruginosa LESB58]
 gi|254239132|ref|ZP_04932455.1| ribonuclease III [Pseudomonas aeruginosa C3719]
 gi|254245025|ref|ZP_04938347.1| ribonuclease III [Pseudomonas aeruginosa 2192]
 gi|296390880|ref|ZP_06880355.1| ribonuclease III [Pseudomonas aeruginosa PAb1]
 gi|313105592|ref|ZP_07791858.1| ribonuclease III [Pseudomonas aeruginosa 39016]
 gi|7531195|sp|Q9XCX9|RNC_PSEAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122257792|sp|Q02HS2|RNC_PSEAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735378|sp|B7UYX2|RNC_PSEA8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|5114183|gb|AAD40229.1|AF123492_1 RNase III [Pseudomonas aeruginosa]
 gi|9946659|gb|AAG04159.1|AE004512_2 ribonuclease III [Pseudomonas aeruginosa PAO1]
 gi|115583907|gb|ABJ09922.1| ribonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126171063|gb|EAZ56574.1| ribonuclease III [Pseudomonas aeruginosa C3719]
 gi|126198403|gb|EAZ62466.1| ribonuclease III [Pseudomonas aeruginosa 2192]
 gi|218773515|emb|CAW29327.1| ribonuclease III [Pseudomonas aeruginosa LESB58]
 gi|310878360|gb|EFQ36954.1| ribonuclease III [Pseudomonas aeruginosa 39016]
          Length = 229

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/216 (35%), Positives = 112/216 (51%), Gaps = 7/216 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS      LE+++GY F +R L+  ALTH S +     + ERLEFLGD IL  +I   LF
Sbjct: 1   MSN-SLDRLERKLGYTFKDRDLMVLALTHRSYA---GRNNERLEFLGDAILNFVIGEALF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +HF  A+EG+LS     LV  ET + +AR  ++  ++R+ S   K       SI AD +E
Sbjct: 57  HHFPQAREGQLSRLRARLVKGETLALLARGFEVGDYLRLGSGELKSGGFRRESILADAME 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD G++ A   +  +   +          +D KT LQE+  ++    P Y+V 
Sbjct: 117 ALIGAIYLDTGMDSARERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRGCDLPRYEVV 176

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213
              G  H   F V  E++ L+    G   S+R AEQ
Sbjct: 177 DIQGEPHCRTFFVDCEVALLSDKTHGHGGSRRIAEQ 212


>gi|295111283|emb|CBL28033.1| ribonuclease III, bacterial [Synergistetes bacterium SGP1]
          Length = 251

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
             + L+  +GY+F +  LLE+AL H+S ++ +    S ERLEFLGD +LG +++  L+  
Sbjct: 27  DLAALQAALGYSFRDEGLLEEALCHASFANEHGLAVSNERLEFLGDSVLGFVVARALYRL 86

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  A+EG+L+ +   LV   +    AREL+L   I           +  TS+  D VE+L
Sbjct: 87  YPEAREGDLTQKRAELVCGRSLRDRARELNLPPLILH--GHSVRDEALPTSMCEDAVEAL 144

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + A+ LDGG++ A   + + + Q A    +     K+ LQ W  A+    P Y++   +G
Sbjct: 145 LGAVCLDGGVQAAEGVIGRLFLQEAEVRAETDVSPKSRLQTWLQARRIPLPTYELVSVTG 204

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P H P F V + ++G+        +++ AE  AA  VL+  
Sbjct: 205 PSHAPSFRVRLRVNGVEH-TACGSTRKGAESDAAERVLEDL 244


>gi|288941442|ref|YP_003443682.1| ribonuclease III [Allochromatium vinosum DSM 180]
 gi|288896814|gb|ADC62650.1| ribonuclease III [Allochromatium vinosum DSM 180]
          Length = 225

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 113/226 (50%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+A     L + +G+ F    LL +ALTH S+      + ERLEFLGD ++G +I+  L+
Sbjct: 1   MNA-DPRRLAQALGHRFTREELLIQALTHRSVG---SSNNERLEFLGDALIGFVIAEALW 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EG LS    SLV  E+ +++AR+L L   +R+ +   +       SI AD +E
Sbjct: 57  ERFPKADEGTLSRMRASLVKRESLARLARDLKLGDSLRLGAGELRTGGHARDSILADALE 116

Query: 121 SLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+YLD G E   T        +     + +  +D KT LQEW  +     PEY V 
Sbjct: 117 AVLGAVYLDAGFERTRTVVLELFAARLEQTDAERAGKDPKTRLQEWLQSYKRPLPEYLVL 176

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  HD  F V  ++       +G   S+R AEQ AA  +L+R 
Sbjct: 177 SIDGDQHDQTFIVSCQLQDADVTTRGTGTSRRRAEQAAAESMLERI 222


>gi|332525373|ref|ZP_08401536.1| ribonuclease III [Rubrivivax benzoatilyticus JA2]
 gi|332108645|gb|EGJ09869.1| ribonuclease III [Rubrivivax benzoatilyticus JA2]
          Length = 241

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M A R+  L++R+G+ F   +L+ +ALTH S    +    ERLEFLGD +L   +S LL+
Sbjct: 1   MDA-RHDALQQRLGHRFTRTALMTRALTHRSWGAEH---NERLEFLGDSVLNCAVSALLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  + EG+L+     LV  ++  +VA  L L+  +R+S    +   +   SI AD VE
Sbjct: 57  ERFSGSDEGDLTRVRAHLVREDSLHRVALTLGLSEVLRMSEGEMRGGGAQRPSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A++LDGG + A   V + + +     ++  + +DAKTELQEW  A+    P Y++ 
Sbjct: 117 ALIGAIFLDGGFDPALATVRRLFGEVIAATEADAWSKDAKTELQEWLQARRLPVPAYRIV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREG 224
              G  H   F V   ++ L  A+ G   S+R AEQ AA  +L+   
Sbjct: 177 ATRGEKHAQTFEVECAVATLGLAERGEGRSRRTAEQEAARRLLEGLK 223


>gi|139436972|ref|ZP_01771132.1| Hypothetical protein COLAER_00105 [Collinsella aerofaciens ATCC
           25986]
 gi|133776619|gb|EBA40439.1| Hypothetical protein COLAER_00105 [Collinsella aerofaciens ATCC
           25986]
          Length = 241

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 76/210 (36%), Positives = 107/210 (50%), Gaps = 3/210 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLF 60
           + R +  ++ +G+ F N+ LL  ALTH S         SYERLEFLGD ILG +++  LF
Sbjct: 4   SDRLTRAQEILGHEFNNKVLLRAALTHPSAVEGQPVSASYERLEFLGDSILGAVVARSLF 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EG+L+    SLVS  T S+V+ EL +   I   +         + S   +V E
Sbjct: 64  ESYPEFDEGKLTRLKVSLVSGATLSEVSHELGIDDIIIFGASETGTGARGLHSALENVYE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           SL+ ALYLD G +VA  F+ +  K   A +  +   + K+ LQE   A     P YK+  
Sbjct: 124 SLVGALYLDAGWDVAAEFIHRTLKPHLASERAEHPANPKSFLQECVQADGHEPPAYKLVG 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             GP H P FT VV I G+   +G   SK+
Sbjct: 184 SEGPAHAPTFTAVVLIDGIRQGRGTGSSKK 213


>gi|331005223|ref|ZP_08328616.1| Ribonuclease III [gamma proteobacterium IMCC1989]
 gi|330420966|gb|EGG95239.1| Ribonuclease III [gamma proteobacterium IMCC1989]
          Length = 217

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 84/215 (39%), Positives = 113/215 (52%), Gaps = 6/215 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               L+KRI Y F++ SLLE ALTH S S +   + ERLEFLGD +LG+ IS  LF  F 
Sbjct: 6   DLKQLQKRIDYQFSDESLLETALTHRSFSST---NNERLEFLGDSLLGVTISQQLFEQFP 62

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             KEG LS + + LV   T + +ARE  L+ ++ + S   K       SI AD VE++I 
Sbjct: 63  DVKEGILSRQRSRLVKGVTLAALAREFSLSDYLIMGSGELKSGGFRRDSILADTVEAIIG 122

Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++LD  I+     + +++  R     S    +D KT LQE   +K    P Y V    G
Sbjct: 123 AIFLDSDIQQCQKVILQWFHDRLQGLSSHDQLKDPKTRLQELLQSKKKPLPTYTVANIEG 182

Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAA 216
             H+ RFTV   I+ L  A      S+R AEQ AA
Sbjct: 183 ASHEQRFTVDCGIALLDTAVTATAGSRRQAEQQAA 217


>gi|329767729|ref|ZP_08259245.1| ribonuclease III [Gemella haemolysans M341]
 gi|328838830|gb|EGF88424.1| ribonuclease III [Gemella haemolysans M341]
          Length = 237

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 5/224 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
            +TL K+ G+        + A +HSS ++  +     +YERLEFLGD ++ L  S  LF 
Sbjct: 10  LNTLNKKYGFNLKFSENFKNAFSHSSYTNEKRIAKHLNYERLEFLGDAVVELTTSEFLFK 69

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EGEL+    S+V  +T  + A +L L   I +     K       ++ AD+ ES
Sbjct: 70  KFYELPEGELTKLRASIVCEKTLVKYALQLGLDKCIYLGKGEEKMGGRSRAALLADIFES 129

Query: 122 LIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
              A+YL+  +EV  TF+    + +          D KT LQE+         EY V   
Sbjct: 130 FTGAMYLESNLEVVKTFLHNTLFTEVQDLEYHSFVDYKTILQEYISKIKLGEIEYVVLDS 189

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +GP H   FT  + I G     G   +K+ +EQ++A + L++ G
Sbjct: 190 TGPSHSKTFTSAILIGGKQYGSGTATTKKESEQLSAKQALEKLG 233


>gi|325981700|ref|YP_004294102.1| ribonuclease III [Nitrosomonas sp. AL212]
 gi|325531219|gb|ADZ25940.1| ribonuclease III [Nitrosomonas sp. AL212]
          Length = 237

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 102/221 (46%), Gaps = 6/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
                +R+GY F    LL+ ALTH S S       ERLEFLGD IL  +IS +++ HF  
Sbjct: 14  LDIFCERLGYCFTQSHLLQTALTHRSHS---LPHNERLEFLGDAILNCVISGIIYKHFPE 70

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG LS    + V+ +  S +A  L +   +R+     K       SI AD  E+L+ A
Sbjct: 71  LPEGHLSRLRANFVNQKALSSIALNLQMDKLLRLGEGELKSGGCHRPSILADTFEALLGA 130

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD       T V   +             +D KT LQE+  ++    PEY V   SG 
Sbjct: 131 IYLDSDYAQVETVVMAIYLPLIQNIDLESPAKDPKTLLQEFLQSQKLSLPEYLVVTTSGK 190

Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
            H  +F V   IS L     G   ++R+AEQVAA    ++ 
Sbjct: 191 AHKQKFKVECVISTLNIRTAGEGTNRRSAEQVAAKLAYEKI 231


>gi|238021755|ref|ZP_04602181.1| hypothetical protein GCWU000324_01658 [Kingella oralis ATCC 51147]
 gi|237866369|gb|EEP67411.1| hypothetical protein GCWU000324_01658 [Kingella oralis ATCC 51147]
          Length = 239

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + L+K++GY F N +LL++ALTH S    + ++ ERLEF+GD IL   I+ +L++ F  
Sbjct: 11  LAHLQKQLGYTFKNPALLQQALTHRSY---HAQNNERLEFIGDSILDYAIAKMLYHAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG LS     LV   T +++AREL + + + + +   K   +   SI AD VE+L+AA
Sbjct: 68  LPEGRLSPLRAQLVKEATLAEIARELHIGNALYLGTGELKSGGNDRPSILADAVEALLAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V + +  R  +  +    +D KT+LQE   A+    P+Y++  ++G 
Sbjct: 128 ISFDADFATAEATVQRLFAPRIQQLNTHTQAKDPKTQLQEMLQAQHLPLPKYRIEKQTGE 187

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220
            +   F V  ++  L         S+RAAEQ  A + +
Sbjct: 188 GNTALFDVSCDLGQLGKITYAQAHSRRAAEQDCAQQAI 225


>gi|217970713|ref|YP_002355947.1| ribonuclease III [Thauera sp. MZ1T]
 gi|217508040|gb|ACK55051.1| ribonuclease III [Thauera sp. MZ1T]
          Length = 222

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 82/217 (37%), Positives = 112/217 (51%), Gaps = 6/217 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L+ R+G+AF++  LL++ALTH S       + ER EFLGD +L  ++S  LF  F   
Sbjct: 3   DRLQARLGHAFSDVRLLQEALTHRSFGQ---PNNERFEFLGDAVLDCVVSIALFGRFGEL 59

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EGELS    SLV  +T  ++A EL+L   +R+     K   S   SI AD +E+L AA+
Sbjct: 60  REGELSRVRASLVRQDTLHRLALELELGDCLRLGEGELKSGGSRRPSILADALEALFAAV 119

Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G E A   +D+ +      +   K  +D KT LQEW  A+    P Y +    G  
Sbjct: 120 YLDAGFEAAKGVIDRLYAPLIAEVDPCKPSKDPKTALQEWLQARRIPVPSYTMVEIVGEA 179

Query: 185 HDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220
           H   F V  EI  LA    G   S+R AEQ +A   L
Sbjct: 180 HAQEFEVACEIPKLAVRTLGRGPSRRIAEQQSAELAL 216


>gi|332638233|ref|ZP_08417096.1| ribonuclease III [Weissella cibaria KACC 11862]
          Length = 232

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 10/228 (4%)

Query: 6   YSTLEKRI----GYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIST 57
           +  L+  +       F + SLLE+ALT ++  + +       Y+RLEFLGD ++    + 
Sbjct: 2   FKQLQAELALSYNIHFNDVSLLEEALTQANYINEHPNYTGNDYQRLEFLGDAVMQQSTAV 61

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  +    EG L+    S+V     + ++REL L  ++++             S+  D
Sbjct: 62  YLFKRYPEWDEGRLTELRISMVQTRAFAALSRELHLDQYVQLGRGEELSGARNRDSLLED 121

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           + E+ I AL+LD G +V   F+      +  +    R        +    + G       
Sbjct: 122 LWEAFIGALFLDQGQDVVMHFLGDIMFNKIDEGFYDRFVDYKSKLQEHLQRHGSVKITYT 181

Query: 178 TFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                P  +++  FTV V ++    A G   S + AE+VAA    +  
Sbjct: 182 KLGERPVENNEQIFTVQVAVNDQVLATGEGKSTKEAEKVAARAAYQTL 229


>gi|86135727|ref|ZP_01054306.1| ribonuclease III [Roseobacter sp. MED193]
 gi|85826601|gb|EAQ46797.1| ribonuclease III [Roseobacter sp. MED193]
          Length = 222

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 78/201 (38%), Positives = 114/201 (56%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            E+RIG+ F    LL +ALTH S+S   ++  +RLEFLGDR+LGL+++T L +H   A E
Sbjct: 4   FEQRIGHQFVRPELLVRALTHPSVSSPNRKDNQRLEFLGDRVLGLVMATALLDHDKDASE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+ RFN+LV  E C+ VARE++L   +++             ++  D +E++IAA+Y 
Sbjct: 64  GQLAPRFNALVRKEACADVAREIELGEVLKLGRSEMMSGGRRKLALLGDGMEAVIAAVYK 123

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           D G EVA   + + W  R  +     RD KT LQE+  A+    P Y    R+GPDH P 
Sbjct: 124 DAGFEVAQAMILRLWGARIHQVEADARDPKTALQEYVQARRQNPPAYVQVARTGPDHQPI 183

Query: 189 FTVVVEISGLAPAQGMDCSKR 209
           FT+ V +      +    SKR
Sbjct: 184 FTIAVRLEDGTEERATAGSKR 204


>gi|85708367|ref|ZP_01039433.1| ribonuclease III [Erythrobacter sp. NAP1]
 gi|85689901|gb|EAQ29904.1| ribonuclease III [Erythrobacter sp. NAP1]
          Length = 232

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 86/218 (39%), Positives = 128/218 (58%), Gaps = 6/218 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSY------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
           IG+   + S+  +ALTH S + ++      +  Y+RLEFLGDR+LGL +++ LF   D +
Sbjct: 15  IGFEVKDGSMWLEALTHGSFNSTHTATGQPEADYQRLEFLGDRVLGLSVASWLFRSSDRS 74

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           KEG+LS R N+LVS  TC+++AR + L+  IR+    R+D  S   +I  DV+E++I A 
Sbjct: 75  KEGQLSQRLNALVSGATCARIARTIGLSDHIRLGKQAREDGGSDSDNILGDVMEAIIGAS 134

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +LD G +     + + W+          +  K+ LQEWA       P+Y V  RSGPDH 
Sbjct: 135 FLDNGFDTTRAIILELWEPELAGDAGKAKHPKSALQEWAAGNRRAMPQYDVIDRSGPDHA 194

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            RFTV V I  +  A+G+  SK  AE++AAAE L++ G
Sbjct: 195 ARFTVRVSIHKVGEAEGVATSKHEAEKLAAAEFLEKYG 232


>gi|300814491|ref|ZP_07094752.1| ribonuclease III [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511409|gb|EFK38648.1| ribonuclease III [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 230

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 121/227 (53%), Gaps = 5/227 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57
            ++   TLEK + Y F N +LL+KALTHSS  +       +S ERLEFLGD +LGL++  
Sbjct: 1   MSVDKETLEKNLNYFFKNHALLDKALTHSSYVNENNLKSFDSNERLEFLGDAVLGLVMGE 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
             +  ++   EGELS   ++ V+    + VA  + L   I       K+   F  SI AD
Sbjct: 61  YYYKKYELYNEGELSKLRSASVNEHALAVVANHIKLGELIHFGKGEIKNGGKFRESILAD 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
             E+LI A++LD   ++A   +   ++    +   + RD K++LQE+       T +Y +
Sbjct: 121 AFEALIGAIFLDSSFKIARKVILALFEDIFDEIMLYDRDYKSKLQEFVQKDSC-TIKYVL 179

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           T   GPD+D  F+  V ISG    +GM  +K+ +EQ+AA E LK  G
Sbjct: 180 TDEIGPDNDKTFSSSVLISGKIYGKGMGKTKKKSEQMAAYEALKVLG 226


>gi|299135102|ref|ZP_07028293.1| ribonuclease III [Afipia sp. 1NLS2]
 gi|298590079|gb|EFI50283.1| ribonuclease III [Afipia sp. 1NLS2]
          Length = 282

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 88/202 (43%), Positives = 120/202 (59%), Gaps = 3/202 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +E+RIG+ F N +LL+ ALTH S    S S  +SY+RLEFLGD +LGL++S +L+  F 
Sbjct: 56  EIEQRIGHTFKNPALLKTALTHVSALKSSQSRTDSYQRLEFLGDHVLGLIVSDMLYGAFP 115

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EGE+S R   LV  E C  VA+ L L   I++ +           SI  D+ E++I 
Sbjct: 116 KADEGEMSKRLADLVRKEACVDVAKSLGLHENIKLGTVGAGVGARLRNSIVGDICEAVIG 175

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A++LDGG   A  FV + W +R  +  +  RD KT LQEWA  K   TP Y+   R+GP 
Sbjct: 176 AIFLDGGYGAAEQFVLRNWTERMRRPVRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPH 235

Query: 185 HDPRFTVVVEISGLAPAQGMDC 206
           HDPRF V V++ GLA A+G+  
Sbjct: 236 HDPRFRVAVDLPGLASAEGIGS 257


>gi|323700157|ref|ZP_08112069.1| ribonuclease III [Desulfovibrio sp. ND132]
 gi|323460089|gb|EGB15954.1| ribonuclease III [Desulfovibrio desulfuricans ND132]
          Length = 227

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 113/222 (50%), Gaps = 4/222 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +  + L+  I + F     LE ALTHSS ++     E  ERLEFLGD +L L IS   F 
Sbjct: 1   MDTAALQDCIHHRFGQVKFLETALTHSSFANEQDGFEDNERLEFLGDAVLELCISEEGFK 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +A EG+L+   + LV  ++ + +AREL+L  FIR+             ++ AD  E+
Sbjct: 61  RYPTAHEGQLTRIRSQLVKEQSLAGIARELELDRFIRLGRGEELQGGRERDALLADAFEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A++LDGG E A   +   ++ +          +D K+ LQE A   F   P Y ++ 
Sbjct: 121 LLGAVFLDGGFEAARRTILDIFEDQWPARAMLPETKDYKSRLQEVAQDVFRDRPVYVLSG 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            SGP+H+  F V V +      +G+  S + AEQ AA   L+
Sbjct: 181 TSGPEHEKLFEVDVTLPNGERFRGLGTSVKRAEQEAARMGLE 222


>gi|282600119|ref|ZP_05973085.2| ribonuclease III [Providencia rustigianii DSM 4541]
 gi|282566488|gb|EFB72023.1| ribonuclease III [Providencia rustigianii DSM 4541]
          Length = 263

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 108/213 (50%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L    L++++GY F    LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 38  MNPLLLEKLQRKLGYTFTQHDLLIQALTHRSAS---SKHNERLEFLGDSILSFVIANDLY 94

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 95  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 154

Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +      +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 155 ALIGGIFLDSDIQTIERIILAWYKGRLDEISPGDKQKDPKTRLQEYLQGRHLPLPNYLVV 214

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRA 210
              G  HD  FT+  E+SG+  +  G+  S+R 
Sbjct: 215 QVKGEAHDQEFTIHCEVSGIEQSINGVGSSRRK 247


>gi|282882375|ref|ZP_06291003.1| ribonuclease III [Peptoniphilus lacrimalis 315-B]
 gi|281297796|gb|EFA90264.1| ribonuclease III [Peptoniphilus lacrimalis 315-B]
          Length = 230

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 121/227 (53%), Gaps = 5/227 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57
            ++   TLEK + Y F N +LL+KALTHSS  +       +S ERLEFLGD +LGL++  
Sbjct: 1   MSVDKETLEKNLNYFFKNHALLDKALTHSSYVNENNLKSFDSNERLEFLGDAVLGLVMGE 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
             +  ++   EGELS   ++ V+    + VA  + L   I       K+   F  SI AD
Sbjct: 61  YYYKKYELYNEGELSKLRSASVNEHALAVVANHIKLGELIHFGKGEIKNGGKFRESILAD 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
             E+LI A++LD   ++A   +   ++    +   + RD K++LQE+       T +Y +
Sbjct: 121 AFEALIGAVFLDSSFKIARKVILALFEDIFDEIMLYDRDYKSKLQEFVQKDSC-TIKYVL 179

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           T   GPD+D  F+  V ISG    +GM  +K+ +EQ+AA E LK  G
Sbjct: 180 TDEIGPDNDKTFSSSVLISGKIYGKGMGKTKKKSEQMAAYEALKVLG 226


>gi|162447098|ref|YP_001620230.1| dsRNA-specific ribonuclease III [Acholeplasma laidlawii PG-8A]
 gi|161985205|gb|ABX80854.1| dsRNA-specific ribonuclease III [Acholeplasma laidlawii PG-8A]
          Length = 219

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/218 (27%), Positives = 93/218 (42%), Gaps = 9/218 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDS 65
           + L K++     +  L  +ALTH+S +H  Q +  ERLEFLGD ++ L++ST LF   D 
Sbjct: 2   NDLLKQLNIETKHIDLYLQALTHTSYAHENQTDHNERLEFLGDAVIELMMSTYLF-THDQ 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           + +G L+ R    V  E     A+++DL S +R+ +  +        S+ AD  E+   A
Sbjct: 61  SNQGVLTKRRAQAVREEALVLYAQKMDLESKMRLGNGEQIAK----PSMIADAFEAFFGA 116

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LY+D G +      +K                     +        +  YK     GP H
Sbjct: 117 LYMDQGFDKTYEIFNKVVIPHLNLVEHI--KDYKTQLQEFIQLERKSLSYKTVKVGGPSH 174

Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
            P F   V +        G   S + AEQ AA E L +
Sbjct: 175 RPIFKSEVFLENSIMLGTGQGSSTKEAEQNAAKEALSK 212


>gi|307292852|ref|ZP_07572698.1| ribonuclease III [Sphingobium chlorophenolicum L-1]
 gi|306880918|gb|EFN12134.1| ribonuclease III [Sphingobium chlorophenolicum L-1]
          Length = 227

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 89/215 (41%), Positives = 122/215 (56%), Gaps = 3/215 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L   IG    + +   +ALTH S       +YERLEFLGDRILGLLI+  +++ F +  E
Sbjct: 14  LTALIGRKPKDPAAFTQALTHGSA---NAVNYERLEFLGDRILGLLIAEWVYDRFSTEPE 70

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS RFN+LVS ETC++VAR   + + + +    R D  +   ++  DV+E+LI ALYL
Sbjct: 71  GKLSRRFNALVSGETCAEVARSAGVPTHLILGKQARDDGAADSDNVLGDVMEALIGALYL 130

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           +GG++ A T V + W  R        +  K+ LQEWA A     PEY +T RSGP H  +
Sbjct: 131 EGGLKEARTLVRRLWADRVDTQASAPKHPKSALQEWAAANKRKPPEYAMTDRSGPHHALK 190

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           FTV V I G   A     SK+ AE  AA  +L + 
Sbjct: 191 FTVTVSIKGAGEASATGGSKQEAETAAAKALLDKL 225


>gi|294815350|ref|ZP_06773993.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
 gi|326443704|ref|ZP_08218438.1| ribonuclease III [Streptomyces clavuligerus ATCC 27064]
 gi|294327949|gb|EFG09592.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
          Length = 303

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/218 (30%), Positives = 107/218 (49%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 26  LEGRLGYRLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 84

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R L+L +FIR+             SI AD +E++I A+
Sbjct: 85  PEGQLAKLRAAVVNSRALAEVGRGLELGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 144

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     KS             +   A  G+     +   +GPDH
Sbjct: 145 YLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTASEGLGVPEYLVTETGPDH 204

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 205 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWREI 242


>gi|254392460|ref|ZP_05007640.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
 gi|197706127|gb|EDY51939.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
          Length = 300

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/218 (30%), Positives = 107/218 (49%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 23  LEGRLGYRLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 81

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R L+L +FIR+             SI AD +E++I A+
Sbjct: 82  PEGQLAKLRAAVVNSRALAEVGRGLELGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 141

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     KS             +   A  G+     +   +GPDH
Sbjct: 142 YLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTASEGLGVPEYLVTETGPDH 201

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 202 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWREI 239


>gi|188593372|emb|CAP07635.1| drosha protein [Oikopleura dioica]
          Length = 1096

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 7/225 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           R + LE+ +G  F N  LL KALT  +   +   +   +RLEFLGD I   L +  LF H
Sbjct: 768 RCAELEELLGVKFKNIRLLAKALTLKNVKYNDITKGHNQRLEFLGDAICNFLAAEYLFKH 827

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++   ++V A T + VA+++ L  F+     L  D   +   I AD++ES 
Sbjct: 828 FPLHHEGHLTLLRCTMVGAPTQALVAQQIGLDKFVISRQSLSHDKMGWKQKILADLMESF 887

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I AL++D GI     F+   +  R       +   D K+ LQ+             +   
Sbjct: 888 IGALFIDRGIIAVDVFMKVAFYPRLKHFIMSQVWNDPKSCLQQCCLTLRPEEGTPDLPEY 947

Query: 181 ---SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              +      R+ V V   G    +G   S + AE+ AA + L++
Sbjct: 948 RTTTSNSSKMRYRVEVFFRGERIGEGHGPSIQLAEKFAARKALEK 992



 Score = 58.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 55/217 (25%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES-------------------------- 39
             +L+  +GY F N S + +A+TH S  ++Y E+                          
Sbjct: 538 LESLQTILGYQFKNLSWITRAMTHPSAVYNYGENPDHVRNSTTNCGIRKPIYGEEGPSRP 597

Query: 40  YE-----------------------------RLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           YE                             R EFLGD +LG ++S  +F+ F +  EG 
Sbjct: 598 YERKRGIVTLIKVMALLGTSEPKESPINYLERPEFLGDAVLGFVVSVSIFHLFPNLGEGA 657

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           LS+   +LV     + +A++L L  +              + +  A+  E+++ A+Y+DG
Sbjct: 658 LSMLRCALVCNVHLAALAQKLTLEDYFVYIHSQDLAKREDLNNALANCFEAVLGAIYMDG 717

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
           G+E     + +           +       LQ+    
Sbjct: 718 GLEPVRQLLARVLFDDKALQRVWLDFPAHPLQQEYPD 754


>gi|329770217|ref|ZP_08261607.1| ribonuclease III [Gemella sanguinis M325]
 gi|328837023|gb|EGF86667.1| ribonuclease III [Gemella sanguinis M325]
          Length = 237

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 104/232 (44%), Gaps = 9/232 (3%)

Query: 1   MSALRYSTLEKRIG--YAF--ANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILG 52
           M       L  ++   Y F     +    A +HSS ++  +     +YERLEFLGD ++ 
Sbjct: 1   MEKRYIEDLLNKLNKDYNFNLKYSNNFRMAFSHSSYTNEKRIAKHLNYERLEFLGDAVVE 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L  S  LF  F +  EGEL+    S+V  +T  + A +L+L   I +     K       
Sbjct: 61  LTTSEFLFKKFPNLAEGELTKLRASIVCEKTLVKYALQLNLDKCIFLGKGEEKMGGRSRA 120

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGV 171
           ++ AD+ ES   A+YL+ G+E   TF+    + +          D KT LQE+       
Sbjct: 121 ALLADIFESFTGAMYLEAGLETVKTFLSNTLFTEVDSFEYLSFVDYKTILQEYVSKIKLG 180

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             EY V   SGP H   FT  V I G     G   +K+ +EQ++A   L++ 
Sbjct: 181 VIEYTVLDSSGPSHLKTFTSAVIIDGKQYGSGTAKTKKESEQLSAKAALEKL 232


>gi|330811510|ref|YP_004355972.1| ribonuclease III [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379618|gb|AEA70968.1| Ribonuclease III [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 229

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 76/217 (35%), Positives = 110/217 (50%), Gaps = 10/217 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF 
Sbjct: 1   MSVSLSRLERQLGYTFKDQDLMLLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+
Sbjct: 58  RFPLAREGQLSRLRARLVKGETLAVLARGFDLGDYLRLGSGELKSGGFRRESILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD G+E+A   V  +              +D KT LQE+  ++    P Y+V  
Sbjct: 118 LIGAIYLDAGMEMARERVLAWLTSEIDSLTLVDTNKDPKTRLQEFLQSRSCELPRYEVVD 177

Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213
             G  H   F V  E+   +    ++G   S+R AEQ
Sbjct: 178 IQGEPHCRTFFVECEVVLLNEK--SRGQGVSRRIAEQ 212


>gi|224476345|ref|YP_002633951.1| ribonuclease III [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254807899|sp|B9DPJ2|RNC_STACT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|222420952|emb|CAL27766.1| putative ribonuclease III [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 242

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 16/235 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRS-----------LLEKALTHSSISHSYQ----ESYERLEF 45
           M+  +   L +     FA++            L ++A +HSS  + +        ERLEF
Sbjct: 1   MTNHKKEALLQNFNKKFADKMHMLKLNYDHLPLYQQAFSHSSFINDFNMDRLAHNERLEF 60

Query: 46  LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
           LGD +L L +S  LF+ +    EG L+    ++V   +    A ++ L   I +     K
Sbjct: 61  LGDAVLELTVSRYLFDKYPELPEGNLTKMRATIVCEPSLVIFANKIQLNELILLGKGEEK 120

Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEW 164
                  S+ +D  E+ + ALYLD G++    F ++               D KT+ QE 
Sbjct: 121 TGGRTRPSLVSDAFEAFVGALYLDQGLDAVWQFSEEVIFPHVEDDELMGVVDFKTQFQEL 180

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            H        Y++    GP H   FT  V + G   A+G   +K+ +EQ AA + 
Sbjct: 181 IHRLSKGNVTYRLIDEQGPAHHRLFTSEVLLEGEPVAKGQGRTKKESEQKAAEKA 235


>gi|183599777|ref|ZP_02961270.1| hypothetical protein PROSTU_03285 [Providencia stuartii ATCC 25827]
 gi|188022041|gb|EDU60081.1| hypothetical protein PROSTU_03285 [Providencia stuartii ATCC 25827]
          Length = 226

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 105/213 (49%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      L++++GY F    LL +ALTH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPSLLEQLQRKLGYKFNQHDLLIQALTHRSA---NSKHNERLEFLGDSILSFVIANDLY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIEKIILDWYQTRLNEISPGDKQKDPKTRLQEYLQGRHLPLPNYIVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P  G+  S+R 
Sbjct: 178 QVKGEAHDQEFTIHCQVSGIEQPINGVGSSRRK 210


>gi|325127806|gb|EGC50714.1| ribonuclease III [Neisseria meningitidis N1568]
          Length = 239

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++KR+GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 12  AAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 69  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   +  R          +D KT LQE   A+    P+Y++  + G  
Sbjct: 129 SFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 188

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
           +D  F V  ++  L    +    S++AAEQ AA E L+
Sbjct: 189 NDSMFVVSCDLGELGFVCRAKGTSRKAAEQSAAKEALQ 226


>gi|307132118|ref|YP_003884134.1| RNase III [Dickeya dadantii 3937]
 gi|306529647|gb|ADM99577.1| RNase III [Dickeya dadantii 3937]
          Length = 226

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L+K++GY F    LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQKKLGYTFQQYDLLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSNIQTVERLILQWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG   P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRK 210


>gi|313665378|ref|YP_004047249.1| ribonuclease III [Mycoplasma leachii PG50]
 gi|312949374|gb|ADR23970.1| ribonuclease III [Mycoplasma leachii PG50]
          Length = 232

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 6/227 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +      ++      ++ + ++ALTH+S ++  +   SY+RLEFLGD IL +  S  LF 
Sbjct: 1   MNIKNFFEKYNIKINDQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYTSKFLFF 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++    EGEL+    S+V  E+ S++AR+++L   IR+             SI AD+ E+
Sbjct: 61  NYSKLGEGELTRLRASIVREESLSRIARDINLGQLIRLGHSELMTKGYEKQSILADIFEA 120

Query: 122 LIAALYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           L AA+YLD   E         + KY K     +      ++ +    +  +  +    + 
Sbjct: 121 LTAAIYLDQSEEGLLIWLEQTLFKYMKDPTFINVTKDFKSELQELLQSEKRSDLKYITEN 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                 ++   +TV + + G     G   SK+ AEQ AA++ L +  
Sbjct: 181 EEFFANENKTLYTVSINLDGQKFGVGKGYSKQEAEQNAASDCLSKLK 227


>gi|254383289|ref|ZP_04998642.1| ribonuclease 3 [Streptomyces sp. Mg1]
 gi|194342187|gb|EDX23153.1| ribonuclease 3 [Streptomyces sp. Mg1]
          Length = 277

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/216 (31%), Positives = 107/216 (49%), Gaps = 4/216 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 23  LEGRLGYRLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYTTHPDL 81

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R L+L SFIR+             SI AD +E++I A+
Sbjct: 82  PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 141

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     KS             +   A  G+     +   +GPDH
Sbjct: 142 YLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLVTETGPDH 201

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 202 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 237


>gi|195151442|ref|XP_002016656.1| GL11697 [Drosophila persimilis]
 gi|194110503|gb|EDW32546.1| GL11697 [Drosophila persimilis]
          Length = 1262

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 81/224 (36%), Gaps = 6/224 (2%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ H
Sbjct: 939  DLTKFEDSIGLKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLISSEYLYRH 998

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L +  +   ++            +    + SL
Sbjct: 999  FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTKYAVYANPKADLKTKDRADLLEAFLGSL 1058

Query: 123  IA----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
                                +  +   +     K +                  P YKV 
Sbjct: 1059 YVDKGLLFCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVV 1118

Query: 179  FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1119 EASGPTNTRVYKVAVYFRSKRLATSSGASIQQAEMNAAKQALEN 1162



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE+ IGY F NR LL+ ALTH S   +Y  +
Sbjct: 708 LDLLEESIGYQFKNRYLLQLALTHPSYKENYGTN 741



 Score = 43.4 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%)

Query: 36  YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95
                ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A++L L  
Sbjct: 793 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 852

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           F+  +          +    A+  E+L+ AL LDGGI+
Sbjct: 853 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 890


>gi|121605952|ref|YP_983281.1| ribonuclease III [Polaromonas naphthalenivorans CJ2]
 gi|120594921|gb|ABM38360.1| RNAse III [Polaromonas naphthalenivorans CJ2]
          Length = 233

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 112/225 (49%), Gaps = 8/225 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L+KR+ + FA   LL +ALTH S S    +  ER+EFLGD +L L ++ LL+     
Sbjct: 11  LQALQKRLQHEFAKPKLLVQALTHRSFS---SDHNERIEFLGDSVLNLAVAGLLYEQLSE 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    +LV  +T  Q+A  L L   +R+     +       S+ AD +E++I A
Sbjct: 68  LPEGDLSRVRANLVKQDTLHQLAVVLGLPDLLRLGEGEARSGGKNRPSMLADALEAVIGA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G + A   V + +K      +     +D KTELQEW   +    P YKV    G 
Sbjct: 128 VYLDAGYDQADQLVRRLFKDVQVNPQMKAIGKDPKTELQEWLQGRKMRLPLYKVVSTMGA 187

Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGIWT 227
            H   F V  EI+    A+ G+  S+RA EQ AA  +L    + T
Sbjct: 188 AHQQTFEVECEIAEFGRAERGIGVSRRAGEQAAATAML--LFVKT 230


>gi|327479794|gb|AEA83104.1| ribonuclease III [Pseudomonas stutzeri DSM 4166]
          Length = 229

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 75/217 (34%), Positives = 108/217 (49%), Gaps = 10/217 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            +   + LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LFN
Sbjct: 1   MSTSLARLERKLGYQFKDQELMLLALTHRSYA---GRNNERLEFLGDAILNFVAGEALFN 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF  A+EG+LS     LV  ET + +AR  +L   +R+ S   K       SI AD +E+
Sbjct: 58  HFPQAREGQLSRLRARLVKGETLAVLARGFELGDHLRLGSGELKSGGYRRESILADTLEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD G++VA   V  +              +D KT LQE+  ++    P Y+V  
Sbjct: 118 LIGAIYLDAGMDVARERVIAWLANELQGLTLVDTNKDPKTRLQEFLQSRACELPRYEVVD 177

Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213
             G  H   F V  ++   +      G   S+R AEQ
Sbjct: 178 IQGEPHCRTFFVECQVALLNDK--THGQGASRRIAEQ 212


>gi|269140067|ref|YP_003296768.1| ribonuclease III [Edwardsiella tarda EIB202]
 gi|267985728|gb|ACY85557.1| ribonuclease III [Edwardsiella tarda EIB202]
 gi|304559895|gb|ADM42559.1| Ribonuclease III [Edwardsiella tarda FL6-60]
          Length = 226

 Score =  123 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFRQQDLLMQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIERLILDWYHSRLEEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
              G  HD  FT+  ++SGL+ P  G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSAPVVGVGSSRRK 210


>gi|271501621|ref|YP_003334647.1| ribonuclease III [Dickeya dadantii Ech586]
 gi|270345176|gb|ACZ77941.1| ribonuclease III [Dickeya dadantii Ech586]
          Length = 226

 Score =  123 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L+K++GY F    LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQKKLGYTFQQYDLLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +      +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSNIQTIERLILSWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG   P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRK 210


>gi|251788698|ref|YP_003003419.1| ribonuclease III [Dickeya zeae Ech1591]
 gi|247537319|gb|ACT05940.1| ribonuclease III [Dickeya zeae Ech1591]
          Length = 226

 Score =  123 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L+K++GY F    LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQKKLGYTFQQYDLLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +      +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSNIQTVERLILSWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG   P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRK 210


>gi|330877435|gb|EGH11584.1| ribonuclease III [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 229

 Score =  123 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/215 (35%), Positives = 109/215 (50%), Gaps = 6/215 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            ++  S LE+++ Y F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF 
Sbjct: 1   MSVSLSRLERQLDYTFKDQELMILALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+
Sbjct: 58  RFPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD G+E A   V  +              +D KT LQE+  ++    P Y+V  
Sbjct: 118 LIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVD 177

Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
             G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 178 IQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212


>gi|297568930|ref|YP_003690274.1| ribonuclease III [Desulfurivibrio alkaliphilus AHT2]
 gi|296924845|gb|ADH85655.1| ribonuclease III [Desulfurivibrio alkaliphilus AHT2]
          Length = 232

 Score =  123 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/204 (33%), Positives = 96/204 (47%), Gaps = 5/204 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +R+GY F +  LL +ALTH S +       +   ERLEFLGD +L L +  LL+      
Sbjct: 12  QRLGYCFHDPQLLRQALTHRSFTAEGGGRGRPHNERLEFLGDAVLDLAVGELLYRRHPKM 71

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EGELS R  +LV+    +++AR   L   + +     +       SI AD  E+L+ A+
Sbjct: 72  REGELSRRRAALVNEAHLARMARRTGLDELLLLGRGEAQSGGRDKPSILADAFEALLGAV 131

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE-LQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLDGG         + +         F  +     LQE    + G  P Y++    GP H
Sbjct: 132 YLDGGCRAVLDLAAELFAPWVTDQDDFEENDAKTALQEVLQERHGQAPGYRLVAEEGPAH 191

Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209
           D RFTV VE  G    QG   SK+
Sbjct: 192 DKRFTVEVEFRGRVMGQGKARSKK 215


>gi|312384091|gb|EFR28902.1| hypothetical protein AND_02573 [Anopheles darlingi]
          Length = 1155

 Score =  123 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 81/223 (36%), Gaps = 6/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            +  E  IG  F +  LL +A T  S   +     + +RLEFLGD +L L+ +  ++ HF
Sbjct: 676 LTRFEDSIGVKFNHIRLLARAFTDRSRGYTALTLGTNQRLEFLGDAVLKLIGTEHVYRHF 735

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                  L+   N LVS  T + V  +L +A +  +S+   +        +    + +L 
Sbjct: 736 PKHHSQHLADWRNQLVSNRTLATVCDDLGMAHYAIISNPKTELKMKDRADLLEAFIGALY 795

Query: 124 A----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
                              + +  + +     K +           +      P YK+  
Sbjct: 796 VDKGLLHCEKLCEVCLFPRLQELIENQERNDPKTKLQQHCHATHPMYGSTPDHPLYKLIG 855

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             G   +   TV V   G   A     S R AE+ AA   L++
Sbjct: 856 CIGSMKNRVCTVGVYFRGKQLAIANGHSIRQAEENAARLALEQ 898



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 43/140 (30%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS------------------------------ 35
              LEK+I Y F NR  L+ ALTH + +++                              
Sbjct: 460 LDVLEKQIDYRFTNRYTLQLALTHRTYANNGGTNPDHVRNVLANCGILNMNPRKRNVHSM 519

Query: 36  -------------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
                         +   ERL FLGD ++    S  LF+ F +  EG LSV   ++V  +
Sbjct: 520 IRPHSGKKSETAFNRRHNERLAFLGDAVIVFSASVPLFHMFPNLGEGGLSVYRGAIVEKQ 579

Query: 83  TCSQVARELDLASFIRVSSD 102
               +A++L L  F+R +  
Sbjct: 580 HLVVLAKKLHLEEFLRCAHG 599


>gi|330466266|ref|YP_004404009.1| ribonuclease iii [Verrucosispora maris AB-18-032]
 gi|328809237|gb|AEB43409.1| ribonuclease iii [Verrucosispora maris AB-18-032]
          Length = 287

 Score =  123 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE   G +  +  LLE+ALTH S ++      + ERLEFLGD +LG++I+T LF++    
Sbjct: 14  LEAAFGVSM-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDL 72

Query: 67  KEGELSVRFNSLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            EG+L+    S+V+    + VAR L       ++ +             SI AD +E+L+
Sbjct: 73  PEGQLAKLRASVVNMRALADVARGLGPDGLGPYLLLGKGEETTGGRDKASILADTLEALL 132

Query: 124 AALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A+YL  G++ A   + + +    A  +G+          +   A  G+         +G
Sbjct: 133 GAIYLQYGLDTAAEVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPEYRIEGAG 192

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH   FT  V ++G         SK+ AEQ AA    +   
Sbjct: 193 PDHLKTFTAWVVVAGNRYGGADGRSKKEAEQRAAESAWRTLN 234


>gi|160900693|ref|YP_001566275.1| ribonuclease III [Delftia acidovorans SPH-1]
 gi|238687167|sp|A9BNJ5|RNC_DELAS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|160366277|gb|ABX37890.1| Ribonuclease III [Delftia acidovorans SPH-1]
          Length = 227

 Score =  123 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 113/222 (50%), Gaps = 6/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + L+ R+ + FA  +LL++A+TH S S    ++ ERLEFLGD +L L IS+LL+    S
Sbjct: 5   LNALQLRLQHQFAEPALLQRAVTHRSFS---ADNNERLEFLGDSVLNLAISSLLYQRLSS 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    +LV   T  Q+A  L L   +R+     K       SI AD VE+LI A
Sbjct: 62  MPEGDLSRVRANLVKEGTLHQIALRLQLPDLLRLGEGESKSGGKQRPSILADAVEALIGA 121

Query: 126 LYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G       V   ++            +DAKT LQEW   +    P+Y+V   +G 
Sbjct: 122 VYLDAGYAAGEKVVHHLFEGVDINPHMRAAEKDAKTALQEWLQGRRMKLPQYEVVATTGA 181

Query: 184 DHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224
            H   F V   I+ L   A+G   S+RAAEQ AA  +L+   
Sbjct: 182 AHRQTFEVACAIAELQLQARGTGASRRAAEQTAATAMLELLK 223


>gi|290476134|ref|YP_003469034.1| RNase III, ds RNA [Xenorhabdus bovienii SS-2004]
 gi|289175467|emb|CBJ82270.1| RNase III, ds RNA [Xenorhabdus bovienii SS-2004]
          Length = 226

 Score =  123 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/213 (32%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+++  + L++++GY F    LL +ALTH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNSIIINRLQRKLGYTFIQHDLLLQALTHRSA---NSKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD +E
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGHRRESILADSIE 117

Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A++LD  I+     +      +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGAIFLDSDIQTIERIILSWYETRLNEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRA 210
              G  HD  FT+  +ISG   P +G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQISGFEQPVRGVGSSRRK 210


>gi|319946572|ref|ZP_08020806.1| ribonuclease III [Streptococcus australis ATCC 700641]
 gi|319746620|gb|EFV98879.1| ribonuclease III [Streptococcus australis ATCC 700641]
          Length = 241

 Score =  123 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/212 (33%), Positives = 102/212 (48%), Gaps = 6/212 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M AL Y+ L ++    F +  LLE A TH+S ++ ++       ERLEFLGD IL L+IS
Sbjct: 9   MQAL-YNLLAEKFRLTFDDTELLETAFTHTSYANEHRLLKISHNERLEFLGDAILQLVIS 67

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  + S  EG+LS   + +V  E+ +  +R+     FI++     K       +I  
Sbjct: 68  EYLFALYPSKPEGDLSKMRSMIVREESLAGFSRDCGFDQFIKLGKGEEKSGGRNRDTILG 127

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD G+E    F+ +    +      +   D KT LQE       V   Y
Sbjct: 128 DLFEAFLGALLLDKGVETVRDFIQQVMIPKVEAGQFEQVIDYKTRLQEILQIHGDVLITY 187

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +VT  SGP H   F V V ++G    QG   S
Sbjct: 188 EVTSESGPAHAKEFEVQVSVNGKIIGQGRGRS 219


>gi|270304349|gb|ACZ71259.1| RNAse type III [Escherichia coli BL21]
          Length = 226

 Score =  123 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/213 (30%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH     + ++  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHR---RASRKHNERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+ +   K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGTGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++L+  I+     +  +++ R  +      ++D KT + E+   +    P Y V 
Sbjct: 118 ALIGGVFLESDIQTVEKLILNWYQTRVDEISPGDKQKDPKTRVHEYLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|254374854|ref|ZP_04990335.1| ribonuclease III [Francisella novicida GA99-3548]
 gi|151572573|gb|EDN38227.1| ribonuclease III [Francisella novicida GA99-3548]
          Length = 230

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 9/222 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS     +GY F + +LL +ALTH S     +++YERLEFLGD +L  +I+ +L+  F  
Sbjct: 5   YSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFTD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T +Q+A  L +  +I       +        I  DV E++I A
Sbjct: 62  LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYII--LGASEQGGHKREKILEDVFEAVIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD         + K+++             +D+K++LQE         PEY +    G
Sbjct: 120 IYLDSDFATVKKVILKWYQPIILSINLDTIKVKDSKSKLQEILLQNALSLPEYSIEAIDG 179

Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
            DH+ +FTVV     L    +    S++ AEQ AA ++++  
Sbjct: 180 KDHEQQFTVVAMSKDLNLRVKAQGTSRKKAEQKAAEKMIEML 221


>gi|312959172|ref|ZP_07773691.1| Ribonuclease 3 [Pseudomonas fluorescens WH6]
 gi|311286942|gb|EFQ65504.1| Ribonuclease 3 [Pseudomonas fluorescens WH6]
          Length = 229

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 76/217 (35%), Positives = 107/217 (49%), Gaps = 10/217 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             +  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF 
Sbjct: 1   MTVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS     LV  ET + +AR   L  ++R+ S   K       SI AD +E+
Sbjct: 58  RFPQAREGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD G+E A   V  +              +D KT LQE+  ++    P Y+V  
Sbjct: 118 LIGAIYLDAGMEAAKARVTAWLTSEIESLTLVDTNKDPKTRLQEFLQSRGCELPRYEVVD 177

Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213
             G  H   F V  EI   +    ++G   S+R AEQ
Sbjct: 178 IQGEPHCRVFFVECEITLLNEK--SRGQGVSRRIAEQ 212


>gi|212710663|ref|ZP_03318791.1| hypothetical protein PROVALCAL_01729 [Providencia alcalifaciens DSM
           30120]
 gi|212686744|gb|EEB46272.1| hypothetical protein PROVALCAL_01729 [Providencia alcalifaciens DSM
           30120]
          Length = 226

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/213 (32%), Positives = 106/213 (49%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      L++++GY F    LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPSLLEKLQRKLGYTFKQNDLLIQALTHRSAS---SKHNERLEFLGDSILSFVIANDLY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +      +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIEKIILAWYKARLDEISPGDKQKDPKTRLQEYLQGRHLPLPNYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRA 210
              G  HD  FT+  ++SG   P  G+  S+R 
Sbjct: 178 LVKGEAHDQEFTIHCQVSGIEEPIHGIGSSRRK 210


>gi|254442236|ref|ZP_05055712.1| ribonuclease III [Verrucomicrobiae bacterium DG1235]
 gi|198256544|gb|EDY80852.1| ribonuclease III [Verrucomicrobiae bacterium DG1235]
          Length = 263

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 6/225 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   LE ++GY F  + LL ++LTH S    +    ++ +RLEFLGD ++ L+++  L+ 
Sbjct: 35  KVKRLENKLGYTFKTKGLLHQSLTHPSFLLNTKDQLKNNQRLEFLGDSVIQLVLTEKLYE 94

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F S +EG+L+   +     +  + +AREL L  ++ +    R    +   S   D  E+
Sbjct: 95  KFPSLREGKLTSIRSGYARGDYMAGIARELKLGDYLILKPKDRNAGVAENDSALGDAFEA 154

Query: 122 LIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQE-WAHAKFGVTPEYKVT 178
           LI A+YLD   E +         +   A  +     + K +LQE            Y+  
Sbjct: 155 LIGAIYLDSDFETSRKIILELYNYLDTAPTAKGVIANPKGKLQELIQPVHGNNALRYETI 214

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            ++G  H+  F V V        +G   +K+ A + AA   + + 
Sbjct: 215 AQTGEAHEREFEVAVFCHDEQLGKGAGRTKKEAAEKAALIAIAKI 259


>gi|90101636|sp|Q4KHT1|RNC_PSEF5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 229

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 76/217 (35%), Positives = 110/217 (50%), Gaps = 10/217 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            ++  S LE+++GY+F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF 
Sbjct: 1   MSVSLSRLERQLGYSFKDQELMLLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+
Sbjct: 58  RFPQAREGQLSRLRARLVKGETLAVLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD G+E A   V  +              +D KT LQE+  ++    P Y+V  
Sbjct: 118 LIGAIYLDAGMETARDRVLSWLASEFESLTLVDTNKDPKTRLQEFLQSRACELPRYEVVD 177

Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213
             G  H   F V  E+   +    ++G   S+R AEQ
Sbjct: 178 IQGEPHCRTFFVECEVTLLNEK--SRGQGVSRRIAEQ 212


>gi|152986476|ref|YP_001350091.1| ribonuclease III [Pseudomonas aeruginosa PA7]
 gi|189043330|sp|A6VAK6|RNC_PSEA7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|150961634|gb|ABR83659.1| ribonuclease III [Pseudomonas aeruginosa PA7]
          Length = 229

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 76/216 (35%), Positives = 112/216 (51%), Gaps = 7/216 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS      LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +I   LF
Sbjct: 1   MSN-PLDRLERKLGYTFKDQDLMVLALTHRSYA---GRNNERLEFLGDAILNFVIGEALF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +HF  A+EG+LS     LV  ET + +AR  ++  ++R+ S   K       SI AD +E
Sbjct: 57  HHFPQAREGQLSRLRARLVKGETLALLARGFEVGDYLRLGSGELKSGGFRRESILADAME 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD G++ A   +  +   +          +D KT LQE+  ++    P Y+V 
Sbjct: 117 ALIGAIYLDTGMDSARERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRGCDLPRYEVV 176

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213
              G  H   F V  E++ L+    G   S+R AEQ
Sbjct: 177 DIQGEPHCRTFFVDCEVALLSDKTHGHGGSRRIAEQ 212


>gi|260771922|ref|ZP_05880840.1| ribonuclease III [Vibrio metschnikovii CIP 69.14]
 gi|260613214|gb|EEX38415.1| ribonuclease III [Vibrio metschnikovii CIP 69.14]
          Length = 204

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 6/204 (2%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           E ALTH S      +  ERLEFLGD IL  +I+  L+  F    EG++S    +LV   T
Sbjct: 2   ELALTHRSA---NGKHNERLEFLGDSILSFVIADELYRRFPKINEGDMSRMRATLVRGNT 58

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            +++ RE  L  ++++     K       SI AD VE++I A+YLD  IE+A   +  ++
Sbjct: 59  LAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEMARGIILNWY 118

Query: 144 KQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200
           + R         ++D KT LQE+   K    P Y VT   G  H+  FTV  +++G+  P
Sbjct: 119 QPRLDAIKPGVSQKDPKTRLQEFLQGKRSPLPIYIVTNIKGEAHNQEFTVSCDVAGIATP 178

Query: 201 AQGMDCSKRAAEQVAAAEVLKREG 224
             G   S+R AEQ AA   L++  
Sbjct: 179 VIGKGTSRRKAEQAAAETALEQLN 202


>gi|195455348|ref|XP_002074681.1| GK23200 [Drosophila willistoni]
 gi|194170766|gb|EDW85667.1| GK23200 [Drosophila willistoni]
          Length = 1320

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 6/223 (2%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             +  E  +G  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ HF
Sbjct: 961  LTKFEDSVGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1020

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG LS+  +SLV+  T + V  +L +  +   ++            +    + SL 
Sbjct: 1021 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLKTKDRADLLEAFLGSLY 1080

Query: 124  A----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
                               +  +   +     K +                  P YKV  
Sbjct: 1081 VDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYKVVE 1140

Query: 180  RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1141 ASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1183



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE+ IGY F NR LL+ ALTH S   +Y  +
Sbjct: 729 LDLLEESIGYHFKNRYLLQLALTHPSYKENYGTN 762



 Score = 43.4 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%)

Query: 36  YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95
                ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A++L L  
Sbjct: 814 NITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEE 873

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           F+  +          +    A+  E+L+ AL LDGGI+
Sbjct: 874 FMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 911


>gi|261377909|ref|ZP_05982482.1| ribonuclease III [Neisseria cinerea ATCC 14685]
 gi|269145767|gb|EEZ72185.1| ribonuclease III [Neisseria cinerea ATCC 14685]
          Length = 239

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 11/229 (4%)

Query: 1   MSALRYS-----TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55
           M            ++K++GY F + SLL +ALTH S    + +  ER EF+GD IL   +
Sbjct: 1   MKNDVLKQQAHTAIQKKLGYEFRDISLLRQALTHRSC---HAKHNERFEFVGDSILNYTV 57

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           + +LF+ F    EGELS    SLV+    +++A E+D+   + + +   K       SI 
Sbjct: 58  ARMLFDAFPKLTEGELSRLRASLVNEGVLAEIAAEMDVGEGLYLGTGELKSGGFRRPSIL 117

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTP 173
           AD +E++ AA+  D     A   V   + +R  +       +D KT LQE   A+    P
Sbjct: 118 ADAMEAMFAAVSFDADFNTAEKVVRHLFSERVKRADFQNQEKDGKTALQEALQARRFALP 177

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
           +Y++  + G  +D  F +  ++  L    +    S++AAEQ AA E L+
Sbjct: 178 KYRIEEQIGHANDSMFVISCDLGELGFVCRAKGTSRKAAEQSAAKEALQ 226


>gi|242240203|ref|YP_002988384.1| ribonuclease III [Dickeya dadantii Ech703]
 gi|242132260|gb|ACS86562.1| ribonuclease III [Dickeya dadantii Ech703]
          Length = 226

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L+K++GY F    LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQKKLGYTFQQYDLLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     + K+++ R  A+  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQAVERLILKWYQSRLDAISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG   P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRK 210


>gi|118498035|ref|YP_899085.1| ribonuclease III [Francisella tularensis subsp. novicida U112]
 gi|194323260|ref|ZP_03057044.1| ribonuclease III [Francisella tularensis subsp. novicida FTE]
 gi|208779555|ref|ZP_03246900.1| ribonuclease III [Francisella novicida FTG]
 gi|254373391|ref|ZP_04988879.1| ribonuclease III [Francisella tularensis subsp. novicida GA99-3549]
 gi|189043316|sp|A0Q7W6|RNC_FRATN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|118423941|gb|ABK90331.1| ribonuclease III [Francisella novicida U112]
 gi|151571117|gb|EDN36771.1| ribonuclease III [Francisella novicida GA99-3549]
 gi|194322624|gb|EDX20104.1| ribonuclease III [Francisella tularensis subsp. novicida FTE]
 gi|208744516|gb|EDZ90815.1| ribonuclease III [Francisella novicida FTG]
 gi|332678757|gb|AEE87886.1| Ribonuclease III [Francisella cf. novicida Fx1]
          Length = 230

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 9/222 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS     +GY F + +LL +ALTH S     +++YERLEFLGD +L  +I+ +L+  F  
Sbjct: 5   YSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFTD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T +Q+A  L +  +I       +        I  DV E++I A
Sbjct: 62  LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYII--LGASEQGGHKREKILEDVFEAVIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD         + K+++             +D+K++LQE         PEY +    G
Sbjct: 120 IYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETIDG 179

Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
            DH+ +FTVV     L    +    S++ AEQ AA ++++  
Sbjct: 180 KDHEQQFTVVAMSKDLNLRVKAQGTSRKKAEQKAAEKMIEML 221


>gi|121996844|ref|YP_001001631.1| ribonuclease III [Halorhodospira halophila SL1]
 gi|121588249|gb|ABM60829.1| RNAse III [Halorhodospira halophila SL1]
          Length = 234

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 104/223 (46%), Gaps = 6/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               L++R+ Y F     L++A+TH S         ERLEFLGD +L  +++  +F+   
Sbjct: 3   DLERLQQRLDYQFLELERLQEAVTHRSAG---GRHNERLEFLGDSVLNFVVAHEVFHRRP 59

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG LS    SLV+  + + +AR+++L   +R+     K       SI AD +E++  
Sbjct: 60  TDSEGTLSRLRASLVNRSSLAAIARDIELGDHLRLGGGELKSGGHRRDSILADALEAVFG 119

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G E A   +   ++ R          +D KT LQE   +     P Y+V    G
Sbjct: 120 AVYLDAGFETAARVITGLYRSRLESLPDKAVLKDPKTRLQEVLQSTRRPLPGYQVLDVRG 179

Query: 183 PDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREG 224
             H  RF V   +S       G   S+R AEQ AA  +L   G
Sbjct: 180 RAHHQRFQVECRLSDSEQTTLGEAGSRRQAEQRAAEAMLVEIG 222


>gi|88856701|ref|ZP_01131356.1| ribonuclease III [marine actinobacterium PHSC20C1]
 gi|88813998|gb|EAR23865.1| ribonuclease III [marine actinobacterium PHSC20C1]
          Length = 233

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 100/224 (44%), Gaps = 10/224 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + L   +G    N  +L  ALTH S ++      + ERLEFLGD ILG  ++  L+    
Sbjct: 10  AELSAVLGVEI-NPDVLTLALTHRSFAYENGGIANNERLEFLGDSILGQAVTVKLYRDNP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+ R  SLVS+   +++AR + L ++IR+     +       SI AD VE++I 
Sbjct: 69  ELDEGDLAKRRASLVSSVALAEIARLIGLGAYIRLGKGEEQTGGREKPSILADTVEAIIG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A YLD G + A   V +          +F          +   A+ G          SGP
Sbjct: 129 AAYLDLGGDAATALVLRLVAPLLADPERFGAAMDPKTSLQELAAQLGRGVPDYRIEDSGP 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           DH  RF   + +S    A G   SK+ AE  AA E       WT
Sbjct: 189 DHSKRFHASLVLSNDVIATGTGSSKKQAEMAAALEA------WT 226


>gi|239944597|ref|ZP_04696534.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
          Length = 271

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 20  LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 78

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R L+L SFIR+             SI AD +E++I A+
Sbjct: 79  PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 138

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G+  A   V + +     +S             +   A   +     +   +GPDH
Sbjct: 139 YLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLVTETGPDH 198

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 199 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWREI 236


>gi|152995275|ref|YP_001340110.1| ribonuclease III [Marinomonas sp. MWYL1]
 gi|189043327|sp|A6VUP6|RNC_MARMS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|150836199|gb|ABR70175.1| Ribonuclease III [Marinomonas sp. MWYL1]
          Length = 227

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 87/217 (40%), Positives = 120/217 (55%), Gaps = 7/217 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS+L Y  L +RIGY FA+  LLE ALTH S      ++ ERLEFLGD IL  +I+  LF
Sbjct: 1   MSSL-YQKLSRRIGYFFADLGLLELALTHRSFG---GKNNERLEFLGDSILNYVIAEDLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F  AKEGELS    SLV  +T +++ARE +L  ++++ +   K       SI AD VE
Sbjct: 57  HRFPKAKEGELSRLRASLVKGDTLAELAREFELGDYLKLGAGELKSGGFRRDSILADTVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            +I A+YLD G++V    +  ++K+R   +      +DAKT LQE+  A+    P+Y V 
Sbjct: 117 GIIGAMYLDAGMDVCRQHILAWYKERLDATSLKIVTKDAKTRLQEFLQARKHALPQYDVV 176

Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQV 214
              G  HD  F V   I       +G   S+R AEQ 
Sbjct: 177 NIVGEPHDQTFYVHCHIELCEEFIEGKGNSRRIAEQN 213


>gi|239991059|ref|ZP_04711723.1| ribonuclease III [Streptomyces roseosporus NRRL 11379]
 gi|291448061|ref|ZP_06587451.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
 gi|291351008|gb|EFE77912.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
          Length = 274

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 23  LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 81

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R L+L SFIR+             SI AD +E++I A+
Sbjct: 82  PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 141

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G+  A   V + +     +S             +   A   +     +   +GPDH
Sbjct: 142 YLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLVTETGPDH 201

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 202 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWREI 239


>gi|182435701|ref|YP_001823420.1| ribonuclease III [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178464217|dbj|BAG18737.1| putative ribonuclease III [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 274

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 23  LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 81

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R L+L SFIR+             SI AD +E++I A+
Sbjct: 82  PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 141

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G+  A   V + +     +S             +   A   +     +   +GPDH
Sbjct: 142 YLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLVTETGPDH 201

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 202 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWREI 239


>gi|326776326|ref|ZP_08235591.1| ribonuclease III [Streptomyces cf. griseus XylebKG-1]
 gi|326656659|gb|EGE41505.1| ribonuclease III [Streptomyces cf. griseus XylebKG-1]
          Length = 274

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 23  LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 81

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R L+L SFIR+             SI AD +E++I A+
Sbjct: 82  PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 141

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G+  A   V + +     +S             +   A   +     +   +GPDH
Sbjct: 142 YLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLVTETGPDH 201

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 202 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWREI 239


>gi|312863862|ref|ZP_07724100.1| ribonuclease III [Streptococcus vestibularis F0396]
 gi|322516541|ref|ZP_08069457.1| ribonuclease III [Streptococcus vestibularis ATCC 49124]
 gi|311101398|gb|EFQ59603.1| ribonuclease III [Streptococcus vestibularis F0396]
 gi|322124929|gb|EFX96349.1| ribonuclease III [Streptococcus vestibularis ATCC 49124]
          Length = 229

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/212 (30%), Positives = 101/212 (47%), Gaps = 6/212 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+ L    LE+  G  F  + LLE A TH+S ++ ++       ERLEFLGD  L L+IS
Sbjct: 1   MNQLEQK-LEQDFGIVFNQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  + +  EGE+S   +++V  E+ +  ++      +IR+     K       +I  
Sbjct: 60  VYLYKRYPNKPEGEMSKMRSTIVREESLAGFSKACGFEQYIRLGKGEEKSGGRERATILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD G+     F+++    +  K +     D KT LQE       V   Y
Sbjct: 120 DLWEAFLGALYLDQGLPAVEKFLNQVMIPQVEKGNFDRVTDYKTALQERLQVNGTVDITY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            V   SGP H   FT+ V + G   + G+  S
Sbjct: 180 TVIDESGPAHAKEFTMQVAVDGKELSTGLGKS 211


>gi|198283249|ref|YP_002219570.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665431|ref|YP_002425832.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247770|gb|ACH83363.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517644|gb|ACK78230.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 226

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 108/220 (49%), Gaps = 5/220 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             +L++ +GY F  +SLL +ALTH S         ERLEFLGD  L  +++  LF  F  
Sbjct: 4   LESLQQSVGYQFREQSLLLQALTHRSAG---ARHNERLEFLGDAALNFVVAAKLFARFPK 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS     LV  ET +++A ++ LA  + +     +   +   SI+AD +E++I A
Sbjct: 61  VSEGDLSRMRARLVREETLAEIAGKIALADSLILGPGEIRSGGARRDSIRADALEAVIGA 120

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            +LDGG   A   V +  +        G+  RD KT LQE+   +    P Y      G 
Sbjct: 121 AFLDGGFGAAERIVAQLVEPLMTDDLGGEELRDPKTRLQEFLQGQGRPVPVYTTVAEKGQ 180

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            H+ RF     + G    +  D S+R AEQ AAA +L + 
Sbjct: 181 AHERRFVARCSVPGAEATEAEDGSRRKAEQQAAALMLAQL 220


>gi|114775465|ref|ZP_01451033.1| ribonuclease III [Mariprofundus ferrooxydans PV-1]
 gi|114553576|gb|EAU55957.1| ribonuclease III [Mariprofundus ferrooxydans PV-1]
          Length = 229

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/219 (27%), Positives = 95/219 (43%), Gaps = 1/219 (0%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFD 64
              L++ IGY F N +LL++ALTH S   S      ERLEFLGD +LGL+++  L   F 
Sbjct: 8   LQQLQQVIGYRFNNPALLKRALTHCSALRSAVSGDLERLEFLGDAVLGLVVAEYLHQSFP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV  ++   VA +  L++ + V    R +      SI A+ VE++I 
Sbjct: 68  EEPEGQLSRMRANLVCRDSLLVVASDWRLSACLIVGDGERGEYGIKSPSIVANAVEAVIG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A++ + G + +   V   W+      G+          +      G      V    G  
Sbjct: 128 AVFEESGWDASRRVVLTAWRPMLDDIGRVDPRDAKSRLQELTQGKGWGLPEYVLVDRGVG 187

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           + PRF     +       G    K+ AE  AA +   + 
Sbjct: 188 YQPRFEATCSVQEKVVGHGSGERKKLAEIAAAEQAWSKL 226


>gi|229588601|ref|YP_002870720.1| ribonuclease III [Pseudomonas fluorescens SBW25]
 gi|259491960|sp|C3K6Y7|RNC_PSEFS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|229360467|emb|CAY47324.1| ribonuclease III [Pseudomonas fluorescens SBW25]
          Length = 229

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 75/217 (34%), Positives = 107/217 (49%), Gaps = 10/217 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             +  + LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF 
Sbjct: 1   MTVSLARLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS     LV  ET + +AR   L  ++R+ S   K       SI AD +E+
Sbjct: 58  RFPQAREGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD G+E A   V  +              +D KT LQE+  ++    P Y+V  
Sbjct: 118 LIGAIYLDAGMEAAKERVTAWLTSEIESLTLVDTNKDPKTRLQEFLQSRGCELPRYEVVD 177

Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213
             G  H   F V  EI   +    ++G   S+R AEQ
Sbjct: 178 IQGEPHCRVFFVECEITLLNEK--SRGQGVSRRIAEQ 212


>gi|227494679|ref|ZP_03924995.1| ribonuclease III [Actinomyces coleocanis DSM 15436]
 gi|226831861|gb|EEH64244.1| ribonuclease III [Actinomyces coleocanis DSM 15436]
          Length = 256

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 94/219 (42%), Gaps = 4/219 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLF 60
               + L      +F +  LL  ALTH S +      E  ERLEFLGD +L ++++  L+
Sbjct: 17  NTNLADLFGVWQISF-DPELLILALTHRSFAFEVGNIEPNERLEFLGDSVLSIIVTEYLY 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++  + E  LS    ++VS +T SQVAR + L  FI +             SI  D+ E
Sbjct: 76  KNYPQSSEANLSRMRGAIVSEKTLSQVARNIRLGDFILLGKGENLTGGRDRDSILCDMTE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT-F 179
           ++I A YL  G+E     V+ + +    ++ +  + +  +     +       E      
Sbjct: 136 AMIGATYLSHGLEATRRIVEYHLRPFLERAVELGKSSDYKTTLQEYCAEASLGEPIYEAE 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
             GPDH   F   V + G     G   SK+ A+  AA  
Sbjct: 196 GFGPDHARYFIATVTVGGELVGHGQASSKKGAKSEAARA 234


>gi|78189616|ref|YP_379954.1| ribonuclease III [Chlorobium chlorochromatii CaD3]
 gi|90101617|sp|Q3AQ14|RNC_CHLCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78171815|gb|ABB28911.1| RNAse III [Chlorobium chlorochromatii CaD3]
          Length = 248

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSS-----ISHSYQESYERLEFLGDRILGLLI 55
           M     + L+  IG    N  L + ALTH S         + ES +RLEFLGD +LGLLI
Sbjct: 1   MPPETLAYLQTLIGSLDGNARLYQTALTHRSVIGNTALSHHNESNQRLEFLGDAVLGLLI 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  LF +F ++ EG+LS     +V++++ +  AR + L   + +             S  
Sbjct: 61  SHFLFQNFPASAEGDLSKTRAKIVNSKSLACFARSIGLGEHLLLGESAAHYNIRDSESAL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
           AD  ESLI A+YLD G++ A  F        Q         ++ K+ L E++ A     P
Sbjct: 121 ADAFESLIGAIYLDKGLDAAYGFVDKHIIHHQSFSAIVASEQNYKSCLIEYSQAHHVAAP 180

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            Y V    G +HD  FTV V  + +    G    K+ AEQ+AA E ++R 
Sbjct: 181 VYTVIAEHGAEHDKEFTVEVSCNNIK-GCGTARRKKDAEQLAAKEAMERI 229


>gi|333024194|ref|ZP_08452258.1| putative ribonuclease III [Streptomyces sp. Tu6071]
 gi|332744046|gb|EGJ74487.1| putative ribonuclease III [Streptomyces sp. Tu6071]
          Length = 314

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 4/212 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 65  LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 123

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V+R LDL +FIR+             SI AD +E++I A+
Sbjct: 124 PEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 183

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     KS +           +   A  G+     +    GPDH
Sbjct: 184 YLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQELTAMEGLGVPEYLVTEEGPDH 243

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           +  FT    + G++   G   SK+ AEQ AA 
Sbjct: 244 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 275


>gi|302522137|ref|ZP_07274479.1| ribonuclease III [Streptomyces sp. SPB78]
 gi|302431032|gb|EFL02848.1| ribonuclease III [Streptomyces sp. SPB78]
          Length = 286

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 4/212 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 37  LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 95

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V+R LDL +FIR+             SI AD +E++I A+
Sbjct: 96  PEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 155

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     KS +           +   A  G+     +    GPDH
Sbjct: 156 YLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQELTAMEGLGVPEYLVTEEGPDH 215

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           +  FT    + G++   G   SK+ AEQ AA 
Sbjct: 216 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 247


>gi|197285743|ref|YP_002151615.1| ribonuclease III [Proteus mirabilis HI4320]
 gi|238693201|sp|B4F047|RNC_PROMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|194683230|emb|CAR43912.1| RNase III, ds RNA [Proteus mirabilis HI4320]
          Length = 226

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 77/213 (36%), Positives = 115/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L  + L+K++GY F    LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNTLLVNQLQKKLGYTFKQNELLLQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A++LD  I+     + K+++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGAIFLDSDIQNIENIILKWYENRLAEISPGDKQKDPKTRLQEYLQGRHLPLPSYVVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  +ISG+  P +GM  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQISGIDQPVKGMGTSRRK 210


>gi|318056548|ref|ZP_07975271.1| ribonuclease III [Streptomyces sp. SA3_actG]
 gi|318076722|ref|ZP_07984054.1| ribonuclease III [Streptomyces sp. SA3_actF]
          Length = 275

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 4/212 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 26  LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 84

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V+R LDL +FIR+             SI AD +E++I A+
Sbjct: 85  PEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 144

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     KS +           +   A  G+     +    GPDH
Sbjct: 145 YLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQELTAMEGLGVPEYLVTEEGPDH 204

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           +  FT    + G++   G   SK+ AEQ AA 
Sbjct: 205 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 236


>gi|227503342|ref|ZP_03933391.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
 gi|227075845|gb|EEI13808.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
          Length = 256

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 108/225 (48%), Gaps = 6/225 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
           A+ +S L + +G A      L  ALTH S ++      + ERLEFLGD +LGL ++  L+
Sbjct: 19  AVDHSPLLESLGVALE-PENLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVAAKLY 77

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + S  E ++S    S+VS    S +ARE++L   I +    +        SI AD  E
Sbjct: 78  VTYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTE 137

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++  A+Y + G E A   + + + ++   +       D KT LQE         P Y  T
Sbjct: 138 AIFGAIYREHGFETARDVILRLFAEKIDNASVSGRHLDWKTTLQELCAELKAPMPVYSAT 197

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +GP+HD  F+ V  ++GL    G   +K+ AEQ AA E  +  
Sbjct: 198 A-TGPEHDQTFSAVATVAGLTVGNGQGHNKKLAEQQAAQEACQTL 241


>gi|312879974|ref|ZP_07739774.1| ribonuclease III [Aminomonas paucivorans DSM 12260]
 gi|310783265|gb|EFQ23663.1| ribonuclease III [Aminomonas paucivorans DSM 12260]
          Length = 232

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 7/215 (3%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           + + Y F  + LL +ALTH+S ++        ERLEFLGD +L L +S  L+     A+E
Sbjct: 13  RALRYRFHRQELLTEALTHASFANESGLSRCNERLEFLGDAVLELCVSERLYRERPDAEE 72

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+   ++LV A   ++  R   + + + +    R+   +   ++ AD  E+++ A+YL
Sbjct: 73  GDLTRWRSALVCAPNLARWGRLWGIPACLLLGKGFRRGGPNE--NMVADAFEAVLGAIYL 130

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG++     +        L   +  +D K+ LQE    +    P Y++  +SGP H+  
Sbjct: 131 DGGLDAVREVLHPLPLPEVL---EEGKDPKSRLQEVLQGQGHPCPRYELREQSGPPHERW 187

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F V V       A G   S R AE+ AA   L+  
Sbjct: 188 FVVEVSCGEQVLASGEGRSLREAERCAANRALESM 222


>gi|296130133|ref|YP_003637383.1| ribonuclease III [Cellulomonas flavigena DSM 20109]
 gi|296021948|gb|ADG75184.1| ribonuclease III [Cellulomonas flavigena DSM 20109]
          Length = 240

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 100/224 (44%), Gaps = 10/224 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
            +L +++G    +  LL  ALTH S +H      + ERLEFLGD +LGL+++  L+    
Sbjct: 6   QSLLEKLGVHL-DPELLVLALTHRSFAHEAGGIPTNERLEFLGDTVLGLVVTEHLYRTHP 64

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    + VS    +QVAR LDL S++ +             SI +D +E+L  
Sbjct: 65  GNSEGDLAKMRAATVSQRALAQVARSLDLGSYVLLGKGELATGGRDKDSILSDTLEALFG 124

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A+YL  G+E A   VD+  +     +             +   A  G+   Y      GP
Sbjct: 125 AVYLSHGLEPARVLVDRLVRPTLTAAADLGAGLDWKTSLQELSASLGLGAPYYEVTGEGP 184

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           DH   FT    + G     G   +K+ AEQ AA+        WT
Sbjct: 185 DHARTFTASAVVGGEVRGTGTGPAKKIAEQEAASAA------WT 222


>gi|320008314|gb|ADW03164.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331]
          Length = 274

 Score =  122 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 23  LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDL 81

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R L+L SFIR+             SI AD +E++I A+
Sbjct: 82  PEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAV 141

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G+  A   V + +     +S             +   A   +     +   +GPDH
Sbjct: 142 YLDQGLGAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLVTETGPDH 201

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  FT    + G++   G   SK+ AEQ AA    +  
Sbjct: 202 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWREI 239


>gi|253988786|ref|YP_003040142.1| ribonuclease III [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253780236|emb|CAQ83397.1| ribonuclease III [Photorhabdus asymbiotica]
          Length = 226

 Score =  122 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 70/213 (32%), Positives = 107/213 (50%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFDQHDLLIQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGYRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+        P Y V 
Sbjct: 118 ALIGGIFLDSDIQTVERTILRWYETRLNEISPGDKQKDPKTRLQEYLQGHHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P +G   S+R 
Sbjct: 178 MVRGEAHDQEFTIHCQVSGIEQPVKGTGSSRRK 210


>gi|325294757|ref|YP_004281271.1| ribonuclease 3 [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065205|gb|ADY73212.1| Ribonuclease 3 [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 234

 Score =  122 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 81/234 (34%), Positives = 117/234 (50%), Gaps = 12/234 (5%)

Query: 1   MSALRYSTLEKRIGYAF-----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55
           M    +  LE++I Y F       ++L  K+    S     +E+YE LEFLGD ++GL++
Sbjct: 1   MEKKSFEELERKINYFFKDKKLLKKALTHKSF---SFEKDSEENYEVLEFLGDAVIGLIV 57

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L   F +  EGELS     LVS  + S++A+ +DL S+I +            +SI 
Sbjct: 58  SEELIKRFPTKTEGELSQIRAFLVSEPSLSELAKTVDLGSYIYLGKGEHLSGGREKSSIL 117

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVT 172
            DV ESL  A+YLDGG E A     + +  +  +  +     +D K+ LQE    +F V 
Sbjct: 118 CDVFESLFGAIYLDGGFENAKEVFKRNFLMKLWEILEEAVTYKDFKSFLQEVTQKEFKVI 177

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           P Y V    GP+H+  FTV   +  L        SKR+AEQ AA E+LK  G+ 
Sbjct: 178 PSYSVIKAEGPEHEKIFTVECRVKDLKTVS-TGKSKRSAEQQAAKEMLKVLGVI 230


>gi|227112907|ref|ZP_03826563.1| ribonuclease III [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
 gi|253689440|ref|YP_003018630.1| ribonuclease III [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|259491904|sp|C6DC00|RNC_PECCP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|251756018|gb|ACT14094.1| ribonuclease III [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 226

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQRKLGYTFQQYELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRA 210
              G  HD  FT+  ++SG + +  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRK 210


>gi|227328581|ref|ZP_03832605.1| ribonuclease III [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 226

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQRKLGYTFQQYDLLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRA 210
              G  HD  FT+  ++SG + +  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRK 210


>gi|189425004|ref|YP_001952181.1| ribonuclease III [Geobacter lovleyi SZ]
 gi|189421263|gb|ACD95661.1| Ribonuclease III [Geobacter lovleyi SZ]
          Length = 228

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 7/205 (3%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +G++F N+ LL++ALTH S  +  ++     Y+RLEFLGD +LG L++ LL  HF +  
Sbjct: 8   ILGHSFINQRLLQQALTHPSYLNEARQEGAADYQRLEFLGDAVLGFLLADLLCQHFPALP 67

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS   +SLV     +++A +  +   I +     ++      SI ADV E+L+ A++
Sbjct: 68  EGDLSRLRSSLVDQPRLARLAVDAGIPPLILMGKGAEREGGRTNPSILADVFEALLGAIH 127

Query: 128 LDGGIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            D G       V   +               DAK+ELQE   A+    P Y +  + GPD
Sbjct: 128 CDAGFAAVQQVVKHIYAPLVNAIAAGTPAHHDAKSELQELLAARKQAAPVYNLVDQQGPD 187

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           HD  F + V + G+   QG   SK+
Sbjct: 188 HDRLFCIEVSVDGMPLGQGQGRSKK 212


>gi|306836417|ref|ZP_07469394.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
 gi|304567698|gb|EFM43286.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
          Length = 256

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 6/225 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
           A+ +S L + +G A      L  ALTH S ++      + ERLEFLGD +LGL ++  L+
Sbjct: 19  AVDHSPLLESLGVALE-PENLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVAAKLY 77

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + S  E ++S    S+VS    S +ARE++L   I +    +        SI AD  E
Sbjct: 78  VTYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTE 137

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++  A+Y + G E A   + + + ++   +       D KT LQE         P Y  T
Sbjct: 138 AIFGAIYREHGFETARDVILRLFAEKIDNASVSGRHLDWKTTLQELCAELKAPMPVYSAT 197

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +GP+HD  F+ V  ++GL+   G   +K+ AEQ AA E  +  
Sbjct: 198 A-TGPEHDQTFSAVATVAGLSVGNGQGHNKKLAEQQAAQEACQTL 241


>gi|319440517|ref|ZP_07989673.1| ribonuclease III [Corynebacterium variabile DSM 44702]
          Length = 247

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 23  LEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           L  AL+H S ++      + ERLEFLGD +LGL ++  L+  F    E ++S     +V+
Sbjct: 38  LRLALSHRSFANENGNLPNNERLEFLGDALLGLSVAEQLYRQFPDRSESDISKMRAGVVN 97

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
               ++VAREL +   I +         +   SI AD VE+++ A+YL+ G EVA   V 
Sbjct: 98  MYALAEVARELGMGGNILLGRGEEMTGGADKHSILADSVEAMLGAIYLECGFEVARATVL 157

Query: 141 KYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           + ++++   +       D KT L E              +   GPDHD  F+  V   G 
Sbjct: 158 RIFERKITTAPSTGLTMDWKTVLLEKMSDLKISGDPVYASDVKGPDHDQTFSATVSFDGE 217

Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223
           A   G   +K+ AE  AA E  +  
Sbjct: 218 ARGTGTGHTKKEAEHHAAREAYRTL 242


>gi|304310579|ref|YP_003810177.1| Ribonuclease III [gamma proteobacterium HdN1]
 gi|301796312|emb|CBL44520.1| Ribonuclease III [gamma proteobacterium HdN1]
          Length = 231

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 107/228 (46%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       L  RIGY F + +LL  ALTH S+S   Q + ERLEFLGD +L L+I   LF
Sbjct: 1   MKQTSL--LCSRIGYTFNDFNLLNLALTHRSVS--GQTNNERLEFLGDSVLNLIIGGELF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F   KEG+LS    SLV  ET +Q+  E  L  F+ +     K   +   S  AD VE
Sbjct: 57  TKFPQGKEGQLSRLRASLVRGETLAQIGGEFGLGEFLILGPGEHKSGGARRESTLADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++ + G   A   V +++  R          +D KT LQE         PEY++ 
Sbjct: 117 AIIGAIFCESGYNEARKVVLRWFDSRIQALTLNDTVKDNKTRLQEILQHLKMGLPEYRIL 176

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             SG  H   F +   I+G      G   S+R AEQ AA   L    +
Sbjct: 177 SVSGSSHQQVFQIECAITGVEERFAGSGLSRRQAEQQAAGFALASLSV 224


>gi|319948353|ref|ZP_08022497.1| ribonuclease III [Dietzia cinnamea P4]
 gi|319437984|gb|EFV92960.1| ribonuclease III [Dietzia cinnamea P4]
          Length = 237

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 99/209 (47%), Gaps = 8/209 (3%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           L  +ALTH S ++ +      ERLEFLGD +L L+++  L+N +    EG+L+    SLV
Sbjct: 20  LATQALTHRSYAYEHGGLPHNERLEFLGDAVLELVVTEYLYNAYPDRPEGDLAKIRASLV 79

Query: 80  SAETCSQVARELDLA---SFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +    + +AREL        +R+             SI AD +E++  ++YL  G+E A 
Sbjct: 80  NTYVLADIARELGDGGLGRHLRLGRGEELTGGRDKHSILADTLEAVFGSVYLTHGLETAR 139

Query: 137 TFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             ++K    R           D KT LQE   +       Y++T  +GPDHD  F+ VV 
Sbjct: 140 GLIEKIIGDRLTVVPHLGAALDWKTSLQEKCASLGRSKARYEITS-TGPDHDKTFSAVVF 198

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +      +G   +K+ AEQ AA +     
Sbjct: 199 VGDDPLGEGTGRTKKEAEQKAAEQAWAAL 227


>gi|329894313|ref|ZP_08270183.1| Ribonuclease III [gamma proteobacterium IMCC3088]
 gi|328923109|gb|EGG30432.1| Ribonuclease III [gamma proteobacterium IMCC3088]
          Length = 221

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 114/223 (51%), Gaps = 6/223 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++ S L++ IGY F + SL+E AL H S+     ++ ERLEFLGD ++  +++  LF  +
Sbjct: 1   MQLSALQQAIGYQFKDLSLIELALAHRSVG---AKNNERLEFLGDSLVNHVVAEALFKRY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGE+S R   LV  ET + +ARE +L  F+ +    RK       SI AD +E++ 
Sbjct: 58  PKAPEGEMSRRRAYLVKGETLAAIAREKNLGDFVELGQGERKSGGHRRKSILADALEAVA 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+ LD   E A   V  +++ R      F   +DAKT LQEW   +    PEY +    
Sbjct: 118 AAILLDSDFETAKQVVFAWFRDRLNDETSFAASKDAKTSLQEWLQGRGLALPEYHLVATR 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
           G DH   F V   +            S+R AEQ +A ++L R 
Sbjct: 178 GEDHQKVFVVECRVPSKGLKETASASSRRRAEQTSAQQILDRL 220


>gi|226328142|ref|ZP_03803660.1| hypothetical protein PROPEN_02033 [Proteus penneri ATCC 35198]
 gi|225203846|gb|EEG86200.1| hypothetical protein PROPEN_02033 [Proteus penneri ATCC 35198]
          Length = 227

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 74/214 (34%), Positives = 108/214 (50%), Gaps = 7/214 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L  + L+K++GY F    LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNTLLVNQLQKKLGYTFTQNELLLQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALY---LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           +LI A++       IE          +   +  G  ++D KT LQE+   +    P Y V
Sbjct: 118 ALIGAIFLDSDIQNIEKKIILNWYENRLAEISPGDKQKDPKTRLQEYLQGRHLPLPSYNV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
               G  HD  FT+  +ISG+  P +GM  S+R 
Sbjct: 178 VQVRGEAHDQEFTIHCQISGIEQPVKGMGTSRRK 211


>gi|15639796|ref|NP_219246.1| ribonuclease III (rnc) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189026034|ref|YP_001933806.1| ribonuclease III [Treponema pallidum subsp. pallidum SS14]
 gi|6094109|sp|O83787|RNC_TREPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238689343|sp|B2S448|RNC_TREPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|3323122|gb|AAC65778.1| ribonuclease III (rnc) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189018609|gb|ACD71227.1| ribonuclease III [Treponema pallidum subsp. pallidum SS14]
 gi|291060165|gb|ADD72900.1| ribonuclease III [Treponema pallidum subsp. pallidum str. Chicago]
          Length = 254

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 7/225 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTLLF 60
              L++ +G  F + + L++AL+H S+      H      ER+EFLGD +LG + +  L+
Sbjct: 24  LRRLQETLGVKFRDPTALDQALSHRSLFSSKEDHCGVRHNERMEFLGDAVLGAVAAACLY 83

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                + EG+L+     LVS +T S +A  L +  ++ +             +I AD  E
Sbjct: 84  RALPDSHEGDLAKTKAVLVSTDTLSDIALSLRIDHYLLLGKGEELSGGRHKKAILADATE 143

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I AL+LD G + A  FV +    R     +     D K+ LQ  AH ++   PEY V 
Sbjct: 144 AVIGALFLDSGFKAAERFVLRLLLPRVRPIREKNLHHDYKSTLQVLAHQRYRSKPEYTVV 203

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            R+GPDH  RF V V +       G   SK++AEQ AA    ++ 
Sbjct: 204 KRTGPDHSVRFWVDVTVGDARFGPGYGTSKKSAEQCAARLAWEQL 248


>gi|317401886|gb|EFV82493.1| ribonuclease 3 [Achromobacter xylosoxidans C54]
          Length = 253

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 110/221 (49%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  +TLE R+ + F + +LLE+ALTH S         ERLEFLGD +L  +++ +LF  +
Sbjct: 1   MSLATLENRLDHHFGDPALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLFERY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV   + + +A+ L+L+ ++R+     K       SI AD VE+L 
Sbjct: 58  SKIDEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   + + ++            +DAKT LQE+   +    P Y V    
Sbjct: 118 GAVFLDAGFDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPVYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  H  +F V   I  L         S+RAAEQ AA   L+
Sbjct: 178 GAAHSQQFEVECAIPALEIKVNAPGASRRAAEQSAAKLALE 218


>gi|269218651|ref|ZP_06162505.1| ribonuclease III [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211762|gb|EEZ78102.1| ribonuclease III [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 228

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 105/223 (47%), Gaps = 4/223 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNH 62
           + Y  L +R G       LL  ALTH S +  + E   ERLEFLGD +LG + +  +F  
Sbjct: 1   MSYRELVERWGVDIRRP-LLRLALTHRSFAFEHDEPHNERLEFLGDSVLGFITADKVFRE 59

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  ++EG++S      VS +  + +AREL+L  FIR+             SI +D VE+L
Sbjct: 60  FPDSREGDMSRMKTFAVSEKALASIARELELGRFIRLGRGEDLSGGRDKDSILSDTVEAL 119

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           IAA YL  G++VA   V++    +   +       D +T  +E AH +  V         
Sbjct: 120 IAATYLQHGLDVARKIVERLVAAKIEDASLLGPNLDWQTSFEEVAHERGMVGSLQFELTS 179

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GPDH   +T V  + G    +G   SK+ A Q AA    +  
Sbjct: 180 EGPDHQRVYTAVASMGGRVWGEGTGSSKKTARQAAAQVAYRTI 222


>gi|149186754|ref|ZP_01865065.1| ribonuclease III [Erythrobacter sp. SD-21]
 gi|148829662|gb|EDL48102.1| ribonuclease III [Erythrobacter sp. SD-21]
          Length = 223

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 79/214 (36%), Positives = 118/214 (55%), Gaps = 3/214 (1%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           ++ G+   N +L + ALTH S+    ++ YERLEFLGDR+LGL I+         A EG+
Sbjct: 13  EKTGFTVNNEALWQAALTHGSMGE--KDDYERLEFLGDRVLGLSIA-HWLYEQSDAPEGK 69

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+ R N++VS E C+ VAR ++L+  +R+S   R D      +I  DV+E+L+ A +LD 
Sbjct: 70  LAQRLNAIVSREMCAIVARGIELSEHMRISKQARADGGKDSDNILGDVMEALLGAQFLDN 129

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           G + +   V   W+          +  K+ LQEWA       PEY+V  RSGPDH  +FT
Sbjct: 130 GFKKSRELVHVLWRPALESGAGESKHPKSALQEWAAGNRRKPPEYEVVERSGPDHAAQFT 189

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           V V +  +  A     SK  AE+ AA + +++ G
Sbjct: 190 VKVSVHKVGEATATAGSKGEAERAAAKKFMEKFG 223


>gi|77457221|ref|YP_346726.1| ribonuclease III [Pseudomonas fluorescens Pf0-1]
 gi|90101638|sp|Q3KHL9|RNC_PSEPF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|77381224|gb|ABA72737.1| ribonuclease III [Pseudomonas fluorescens Pf0-1]
          Length = 229

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 77/217 (35%), Positives = 111/217 (51%), Gaps = 10/217 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF+
Sbjct: 1   MSVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFD 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+
Sbjct: 58  RFPLAREGQLSRLRARLVKGETLAVLARGFDLGDYLRLGSGELKSGGFRRESILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD G+EVA   V  +              +D KT LQE+  ++    P Y+V  
Sbjct: 118 LIGAIYLDAGMEVARERVLAWLAGEFEGLTLVDTNKDPKTRLQEFLQSRGCELPRYEVVD 177

Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213
             G  H   F V  E+   +    ++G   S+R AEQ
Sbjct: 178 IQGEPHCRTFFVECEVVLLNEK--SRGQGVSRRIAEQ 212


>gi|268593250|ref|ZP_06127471.1| ribonuclease III [Providencia rettgeri DSM 1131]
 gi|291311145|gb|EFE51598.1| ribonuclease III [Providencia rettgeri DSM 1131]
          Length = 226

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      L++++GY F    LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPSLIERLQRKLGYQFKQNELLIQALTHRSAS---SKHNERLEFLGDSILSFVIANDLY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIERIILDWYQSRLVEISPGDKQKDPKTRLQEYLQGRHLPLPNYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P  G+  S+R 
Sbjct: 178 QVKGEAHDQEFTIHCQVSGIDQPINGVGSSRRK 210


>gi|228477722|ref|ZP_04062351.1| ribonuclease III [Streptococcus salivarius SK126]
 gi|228250611|gb|EEK09822.1| ribonuclease III [Streptococcus salivarius SK126]
          Length = 229

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 65/212 (30%), Positives = 101/212 (47%), Gaps = 6/212 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+ L    LE+  G  F+ + LLE A TH+S ++ ++       ERLEFLGD  L L+IS
Sbjct: 1   MNQLEQK-LEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  + +  EGE+S   +++V  E+ +   +      +IR+     K       +I  
Sbjct: 60  VYLYKRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD G+     F+++    +  K +     D KT LQE       V   Y
Sbjct: 120 DLWEAFLGALYLDQGLPAVEKFLNQVMIPQVEKGNFDRVTDYKTALQERLQVNGTVDITY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            V   SGP H   FT+ V + G   + G+  S
Sbjct: 180 TVIDESGPAHAKEFTMQVAVDGKELSTGLGKS 211


>gi|319941434|ref|ZP_08015762.1| ribonuclease III [Sutterella wadsworthensis 3_1_45B]
 gi|319805054|gb|EFW01884.1| ribonuclease III [Sutterella wadsworthensis 3_1_45B]
          Length = 226

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 6/209 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           L    LE+RIGY F ++ LL +A+TH S +  +    ERLEFLGD +L  +I   LF   
Sbjct: 2   LSLEALEERIGYVFQDKKLLRRAVTHRSFAQEH---NERLEFLGDSVLNCVIGYALFLRD 58

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EGELS    +LV  +T  ++A ++D++SF+ +     K   +   SI AD +E++ 
Sbjct: 59  KHFNEGELSRVRANLVCEKTLHEIALKIDVSSFLYMGEGEVKTGGAHRASILADAMEAIF 118

Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++ + G + A   + K +          +  +D KT LQE         PEY +   +
Sbjct: 119 GAVFREAGFDTAQRVILKLYDPILTGLTPEQMSKDPKTRLQELLQGDHLPRPEYAIVAAT 178

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKR 209
           G  H+ RF     I  L    +G   S+R
Sbjct: 179 GAAHERRFECECRIERLKIVTRGTATSRR 207


>gi|320104374|ref|YP_004179965.1| RNAse III [Isosphaera pallida ATCC 43644]
 gi|319751656|gb|ADV63416.1| RNAse III [Isosphaera pallida ATCC 43644]
          Length = 238

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTL----EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56
           MS    S L    E+ IG++F +R LL  ALTHSS +     S ERLEFLGD +LG+++ 
Sbjct: 1   MSEPDDSELLASCERVIGHSFQDRGLLRAALTHSSRAVHPLASNERLEFLGDSVLGMIVC 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF+ F  AKEG+L+   + +VS +TC+++AR+L L +++ +   +     +   S  A
Sbjct: 61  DTLFHLFPEAKEGDLTRIKSVVVSRQTCTKIARKLGLQNYLLLGKGMGPSSQA-PASTLA 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPE 174
           +V ES++ A+YLD G E A  FV           K+ + + + K++LQ++A    G TP 
Sbjct: 120 NVFESVVGAIYLDSGFEAARRFVLNNLLPEIESSKNEESQGNYKSQLQQYAQKNHGTTPT 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y +    GPDH   F ++  I           +K+ AEQ AA   L
Sbjct: 180 YHLLEEKGPDHRKCFKILARIGSHQFPPAWGQTKKDAEQRAAQNAL 225


>gi|312115946|ref|YP_004013542.1| ribonuclease III [Rhodomicrobium vannielii ATCC 17100]
 gi|311221075|gb|ADP72443.1| ribonuclease III [Rhodomicrobium vannielii ATCC 17100]
          Length = 236

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 86/207 (41%), Positives = 114/207 (55%), Gaps = 1/207 (0%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLF 60
              R   LE  +GY F  R LL +ALTHSS          ERLEFLGDR+LGL I+ LLF
Sbjct: 4   KKPRVEELEASLGYKFQERGLLAEALTHSSARSEKGGRDNERLEFLGDRVLGLSIAALLF 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A+E EL+  FN+LV   TC++VA +L+L   + ++    +        I AD VE
Sbjct: 64  ERFPKAREVELARHFNALVCKTTCAEVALKLELGPHLVMAPSEARSGGRKKDVILADAVE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +L+ A+ +DGG   A T V ++W+     S     DAKT LQE+A ++    P+Y    R
Sbjct: 124 ALLGAISVDGGFAAAETVVHRHWEPFIASSEPPAPDAKTALQEFAQSQKRGLPDYHEVER 183

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207
           SG DH P FTV V + GL P +G   S
Sbjct: 184 SGADHAPNFTVEVRVQGLKPERGTGSS 210


>gi|256077669|ref|XP_002575124.1| ribonuclease III [Schistosoma mansoni]
 gi|238660352|emb|CAZ31357.1| ribonuclease III, putative [Schistosoma mansoni]
          Length = 1577

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +  TLE  +G  F +  +L +A+T      +       +RLEFLGD +L  + +  LF H
Sbjct: 1107 KLCTLEDTLGIKFKHLRVLARAMTIRKTGFNFYTLGDNQRLEFLGDSLLKYVSTDYLFRH 1166

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT--SIQADVVE 120
            F    EG LS+  NSLV+  T + V  EL L  ++   +       S       +AD++E
Sbjct: 1167 FPRHHEGHLSLLKNSLVNKYTQASVCSELGLEHYVIHRNKNDNCNNSQNQNVKYRADLLE 1226

Query: 121  SLIAALYLDGGIEVAGTFVDKYWKQR-------ALKSGKFRRDAKTELQEWAHAKFGVTP 173
            + I AL++D  +     F    +  R          +    +  +  L   +  +     
Sbjct: 1227 AFIGALFVDKDLAWVERFCQICFWPRLVEFILKQEWNDAKSKLQQCCLTFRSLNEDPEIA 1286

Query: 174  EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             YKV   SGP +   + V V   G   A G   S + A+  AA + L+
Sbjct: 1287 HYKVLEHSGPTNQRVYRVGVYFRGQRLATGEGRSVQQAQMEAAKKALE 1334



 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 56/178 (31%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE-------------------RLE-- 44
              +LE R+GY F ++SLL ++LTH S   +   + +                   +LE  
Sbjct: 875  LESLENRLGYTFNDKSLLHQSLTHPSYRRTNFGTNQDHFQNSLVSCGPRILEYGDKLELY 934

Query: 45   -----------------------------------FLGDRILGLLISTLLFNHFDSAKEG 69
                                               FLGD ++ ++ S  LF  F    EG
Sbjct: 935  KAWRKKGLTKMIQVMSFLPKMHEERSNIYGNERLEFLGDAVVEVISSIHLFFMFPELSEG 994

Query: 70   ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
             L     ++V  +  +++A  L +  ++  +  +     S     ++D  E+L+AA+ 
Sbjct: 995  HLDAYRQAIVQNQHLAELAVRLGIHKYLLYTHSVDFCYDSTFIYARSDAFEALMAAIT 1052


>gi|295396031|ref|ZP_06806215.1| ribonuclease III [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971119|gb|EFG47010.1| ribonuclease III [Brevibacterium mcbrellneri ATCC 49030]
          Length = 230

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 4/220 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           S L KR+G    +   L  +LTH S +       + ERLEFLGD +L L  +  LF+H  
Sbjct: 2   SELNKRLGVDI-DPETLRLSLTHRSYAFENGGIPTNERLEFLGDAVLQLKTTKWLFDHNT 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG L+   +++V++   + VAR   +  F+ + +   +       SI AD VE++I 
Sbjct: 61  EASEGRLAKMRSAVVNSRALAGVARTYGIGEFLLLGNGEERTGGRDKDSILADTVEAIIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A Y+  G + A   V++        +             + A A   +   +      GP
Sbjct: 121 ACYVSQGPDAANALVERLVGPLLEDAVNLGAGMDYKTTLQEAAADLSLGAVHYDVTGEGP 180

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   FT V  +     A G   SK+ AE VAA   +K+ 
Sbjct: 181 DHARVFTAVAYLGETRWASGEGTSKKNAELVAAEIAVKKI 220


>gi|312194940|ref|YP_004015001.1| ribonuclease III [Frankia sp. EuI1c]
 gi|311226276|gb|ADP79131.1| ribonuclease III [Frankia sp. EuI1c]
          Length = 319

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 101/207 (48%), Gaps = 8/207 (3%)

Query: 20  RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             LL++ALTH S ++      + ERLEFLGD +L L+++  L+N      EG L+ +  S
Sbjct: 43  PDLLDRALTHRSYAYENGGLPTNERLEFLGDAVLQLVVTDALYNRHPDLPEGALAKQRAS 102

Query: 78  LVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
           +V++   + VAR +       ++ +             SI AD +E+LI A+YL+ G+EV
Sbjct: 103 VVNSRALADVARVIGPKGIGPYLLLGKGEETTGGRDKASILADTLEALIGAVYLELGLEV 162

Query: 135 AGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           A   V +Y+              D KT LQE         P+Y VT  SGPDH  RFT  
Sbjct: 163 AAQLVHRYFDPLLDEAAGRGAGLDWKTSLQERTAELGMGPPDYVVTD-SGPDHAKRFTAR 221

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEV 219
             IS     +G   SK+ AEQ AA   
Sbjct: 222 ARISDRIYGEGEGGSKKEAEQRAAERA 248


>gi|256077671|ref|XP_002575125.1| ribonuclease III [Schistosoma mansoni]
 gi|238660353|emb|CAZ31358.1| ribonuclease III, putative [Schistosoma mansoni]
          Length = 1531

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +  TLE  +G  F +  +L +A+T      +       +RLEFLGD +L  + +  LF H
Sbjct: 1061 KLCTLEDTLGIKFKHLRVLARAMTIRKTGFNFYTLGDNQRLEFLGDSLLKYVSTDYLFRH 1120

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT--SIQADVVE 120
            F    EG LS+  NSLV+  T + V  EL L  ++   +       S       +AD++E
Sbjct: 1121 FPRHHEGHLSLLKNSLVNKYTQASVCSELGLEHYVIHRNKNDNCNNSQNQNVKYRADLLE 1180

Query: 121  SLIAALYLDGGIEVAGTFVDKYWKQR-------ALKSGKFRRDAKTELQEWAHAKFGVTP 173
            + I AL++D  +     F    +  R          +    +  +  L   +  +     
Sbjct: 1181 AFIGALFVDKDLAWVERFCQICFWPRLVEFILKQEWNDAKSKLQQCCLTFRSLNEDPEIA 1240

Query: 174  EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             YKV   SGP +   + V V   G   A G   S + A+  AA + L+
Sbjct: 1241 HYKVLEHSGPTNQRVYRVGVYFRGQRLATGEGRSVQQAQMEAAKKALE 1288



 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 56/178 (31%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE-------------------RLE-- 44
              +LE R+GY F ++SLL ++LTH S   +   + +                   +LE  
Sbjct: 829  LESLENRLGYTFNDKSLLHQSLTHPSYRRTNFGTNQDHFQNSLVSCGPRILEYGDKLELY 888

Query: 45   -----------------------------------FLGDRILGLLISTLLFNHFDSAKEG 69
                                               FLGD ++ ++ S  LF  F    EG
Sbjct: 889  KAWRKKGLTKMIQVMSFLPKMHEERSNIYGNERLEFLGDAVVEVISSIHLFFMFPELSEG 948

Query: 70   ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
             L     ++V  +  +++A  L +  ++  +  +     S     ++D  E+L+AA+ 
Sbjct: 949  HLDAYRQAIVQNQHLAELAVRLGIHKYLLYTHSVDFCYDSTFIYARSDAFEALMAAIT 1006


>gi|37527216|ref|NP_930560.1| ribonuclease III [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|81418780|sp|Q7N1X5|RNC_PHOLL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|36786650|emb|CAE15714.1| ribonuclease III (RNase III) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 226

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 109/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFDQYDLLIQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGYRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A++LD  I+     +      +   +  G  ++D KT LQE+        P Y V 
Sbjct: 118 ALIGAIFLDSDIQSIERIILSWYETRLNEISPGDKQKDPKTRLQEYLQGHHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P +G   S+R 
Sbjct: 178 MVRGEAHDQEFTIHCQVSGIEQPVKGTGSSRRK 210


>gi|325108661|ref|YP_004269729.1| RNAse III [Planctomyces brasiliensis DSM 5305]
 gi|324968929|gb|ADY59707.1| RNAse III [Planctomyces brasiliensis DSM 5305]
          Length = 335

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 112/213 (52%), Gaps = 3/213 (1%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E+ +GY F +++ L K+LTH+SI+ +  +S ER+EFLGD +LG ++   LF  F   +EG
Sbjct: 19  EQALGYQFQDKNWLLKSLTHASIAQTRLQSNERMEFLGDAVLGAVVCDRLFALFPEDEEG 78

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +++   + +VS   C+Q+A  L L  F+++   L         S+ A V ES+IAA+YLD
Sbjct: 79  QMTQMKSEVVSRTACAQLALALGLDRFVQMGKGL-HQSREIPLSVLAGVFESVIAAIYLD 137

Query: 130 GGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG + A  F+    +            R++K++LQ+        TP Y++   SGPDH  
Sbjct: 138 GGYKAAFDFISGKLEDLIQHAAETAHIRNSKSQLQQLTQRTRSQTPTYELLQESGPDHSK 197

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            F V   +           +K+ AEQ AA   L
Sbjct: 198 CFLVQAIVGPDTYPPAWGSNKKEAEQKAALNAL 230


>gi|217977175|ref|YP_002361322.1| Ribonuclease III [Methylocella silvestris BL2]
 gi|254807894|sp|B8EK13|RNC_METSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|217502551|gb|ACK49960.1| Ribonuclease III [Methylocella silvestris BL2]
          Length = 235

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 90/209 (43%), Positives = 126/209 (60%), Gaps = 1/209 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             S LE RIG+ F+   L+E ALTH S +   + SY+RLEFLGDR+LG++++ +L+  F 
Sbjct: 6   DLSALEARIGHRFSAADLIEAALTHVSAAQGKRVSYQRLEFLGDRVLGVVVANMLYGAFP 65

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EGELS R   LV  E+C++VA E  + +++RV    +    S   +I  DV ES+I 
Sbjct: 66  DADEGELSRRLADLVRKESCAEVALEWGVEAYVRVGESEK-QNASVNRAILGDVCESIIG 124

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A++LDGG   A   V + ++ R     +  RD KT LQEWA A+    P Y+ T R+GPD
Sbjct: 125 AVFLDGGFAPAQRVVTQAFEPRMRSPRRPLRDPKTTLQEWAQARGLPPPSYRETARTGPD 184

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           H P FT+ VEI+G   A+    +KR AEQ
Sbjct: 185 HAPEFTISVEIAGFQQAEARGFAKRLAEQ 213


>gi|294084100|ref|YP_003550858.1| Ribonuclease III [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663673|gb|ADE38774.1| Ribonuclease III [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 230

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 121/223 (54%), Gaps = 4/223 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M ++    L +R+ + F ++S+L +ALTH+S +    +S ERLEFLGDR+LGL+++   +
Sbjct: 1   MKSVDLKPLAERLAHKFNDQSVLVRALTHASFA-GPTKSNERLEFLGDRVLGLVLADFFY 59

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+LS+R ++        +V REL+LA FI V + +         S+ AD VE
Sbjct: 60  GQCPDEDEGKLSLRLHADARQSKLVEVGRELELARFISVQNGMALA---ENESVIADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA YLDGG EVA  F+  YW           +DAK+ LQE    +    P Y++  +
Sbjct: 117 SLIAAHYLDGGFEVARRFILAYWALDTAAPAGTDKDAKSRLQELVMKQGLALPHYRLISK 176

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGPDH P     V + G         +++ AEQ AAA ++ + 
Sbjct: 177 SGPDHAPEMIYEVSVEGYDSIVASASNRKLAEQQAAALMVAQI 219


>gi|326576294|gb|EGE26209.1| ribonuclease III [Moraxella catarrhalis CO72]
          Length = 262

 Score =  121 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 106/224 (47%), Gaps = 10/224 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L  ++GY F + SLL +ALTH S     ++SYERLEFLGD +L  +I+  LF  +    E
Sbjct: 35  LYAKLGYTFKDVSLLCRALTHRSY--DPKKSYERLEFLGDALLSSIITKALFAQYPKHDE 92

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+    +LV  ET  Q+A  L+L+ ++ +    RK       SI AD VE+LIAA+YL
Sbjct: 93  GKLTRMRAALVRQETLVQIADHLELSRYLILGVGERKGGGRHRASILADAVEALIAAVYL 152

Query: 129 DGGIEVAGTFVDKYWKQRALK------SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           D         + +                +  +DAK+ LQE         P Y++    G
Sbjct: 153 DNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQTLG 212

Query: 183 PDHDPRFTVV--VEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              +  F V     + G+ P      S+R AEQ  A  ++ +  
Sbjct: 213 SAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQLN 256


>gi|326561464|gb|EGE11814.1| ribonuclease III [Moraxella catarrhalis 46P47B1]
 gi|326562236|gb|EGE12564.1| ribonuclease III [Moraxella catarrhalis 7169]
 gi|326567190|gb|EGE17312.1| ribonuclease III [Moraxella catarrhalis BC1]
 gi|326568472|gb|EGE18552.1| ribonuclease III [Moraxella catarrhalis BC7]
          Length = 262

 Score =  121 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 106/224 (47%), Gaps = 10/224 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L  ++GY F + SLL +ALTH S     ++SYERLEFLGD +L  +I+  LF  +    E
Sbjct: 35  LYAKLGYTFKDVSLLCRALTHRSY--DPKKSYERLEFLGDALLSSIITKALFAQYPKHDE 92

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+    +LV  ET  Q+A  L+L+ ++ +    RK       SI AD VE+LIAA+YL
Sbjct: 93  GKLTRMRAALVRQETLVQIADHLELSRYLILGVGERKGGGRHRASILADAVEALIAAVYL 152

Query: 129 DGGIEVAGTFVDKYWKQRALK------SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           D         + +                +  +DAK+ LQE         P Y++    G
Sbjct: 153 DNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQTLG 212

Query: 183 PDHDPRFTVV--VEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              +  F V     + G+ P      S+R AEQ  A  ++ +  
Sbjct: 213 SAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQLN 256


>gi|261855986|ref|YP_003263269.1| ribonuclease III [Halothiobacillus neapolitanus c2]
 gi|261836455|gb|ACX96222.1| ribonuclease III [Halothiobacillus neapolitanus c2]
          Length = 243

 Score =  121 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 110/220 (50%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L + IG  FA+  LLE AL H S  +    + ERLEFLGD +L L+I+  L+     A
Sbjct: 15  EKLAQHIGITFASPELLEMALRHRSAGN---MNNERLEFLGDAVLNLVIANQLYTMHSKA 71

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV  E+ + +ARELDL S++ +     K       SI AD +E+ I A+
Sbjct: 72  TEGELSRWRASLVREESLAVIARELDLGSYLVLGPGELKSGGFRRDSILADALEATIGAV 131

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G +VA + + + +++           +D KT LQEW        P Y+VT   G  
Sbjct: 132 YLDQGFDVAQSLLVRLFERMLQDLPDAASLKDPKTRLQEWLQGSKRELPSYEVTTIRGQA 191

Query: 185 HDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H   F V   +S     A G   S+R AEQ AA  + +  
Sbjct: 192 HKQVFEVTCTLSDTQQTAVGRGSSRRKAEQAAAESMFEAL 231


>gi|330502445|ref|YP_004379314.1| ribonuclease III [Pseudomonas mendocina NK-01]
 gi|328916731|gb|AEB57562.1| ribonuclease III [Pseudomonas mendocina NK-01]
          Length = 229

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 75/218 (34%), Positives = 107/218 (49%), Gaps = 11/218 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS    S LE+++GY+F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF
Sbjct: 1   MSP-NLSRLERKLGYSFKDQDLMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A+EG+LS     LV  ET + +AR  +L  ++R+ S   K       SI AD +E
Sbjct: 57  ERFPQAREGQLSRLRARLVKGETLAVLARGFELGEYLRLGSGELKSGGFRRESILADALE 116

Query: 121 SLIAALYLDGGIE--VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD G+E            +   L      +D KT LQE+  ++    P Y+V 
Sbjct: 117 ALIGAIYLDAGMEAARERVLDWLTGELDGLTLVDTNKDPKTRLQEFLQSRACELPRYEVV 176

Query: 179 FRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213
              G  H   F V  ++   +      G   S+R AEQ
Sbjct: 177 DVQGEPHCRTFMVECQVALLNEKTL--GQGGSRRIAEQ 212


>gi|295836307|ref|ZP_06823240.1| ribonuclease III [Streptomyces sp. SPB74]
 gi|295825949|gb|EFG64564.1| ribonuclease III [Streptomyces sp. SPB74]
          Length = 280

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 69/212 (32%), Positives = 108/212 (50%), Gaps = 4/212 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 49  LEGRLGYHLE-SALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRAHPDL 107

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V+R LDL +FIR+             SI AD +E++I A+
Sbjct: 108 PEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 167

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ AG  V + +     KS +           +   A  G+     +    GPDH
Sbjct: 168 YLDQGLDKAGELVHRLFDPLIEKSAELGAGLDWKTSLQELTAVEGLGVPEYLVTEEGPDH 227

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           +  FT    + G++   G   SK+ AEQ AA 
Sbjct: 228 EKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 259


>gi|238920905|ref|YP_002934420.1| ribonuclease III [Edwardsiella ictaluri 93-146]
 gi|259491900|sp|C5B8Y2|RNC_EDWI9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238870474|gb|ACR70185.1| ribonuclease III, putative [Edwardsiella ictaluri 93-146]
          Length = 226

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFRQHDLLMQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIERLILDWYRSRLEEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
              G  HD  FT+  ++SGL+ P  G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSAPVVGVGSSRRK 210


>gi|218259360|ref|ZP_03475110.1| hypothetical protein PRABACTJOHN_00767 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225152|gb|EEC97802.1| hypothetical protein PRABACTJOHN_00767 [Parabacteroides johnsonii
           DSM 18315]
          Length = 286

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 5/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M+   YS+L K +G+   N  L E+A  H S S    +    + ERLEFLGD IL  +++
Sbjct: 15  MNKEPYSSLYKILGFYPDNIHLYEQAFHHKSSSIESSDGRWLNNERLEFLGDAILDAVVA 74

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            ++FNHF + +EG L+   + +V  +T ++VA EL L   +  S+ +         +   
Sbjct: 75  DIVFNHFQNKREGFLTNTRSKIVQRDTLNRVAVELGLEKMVVYSAKVNSHNNYMYGNALE 134

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            ++ ++      +         + K +      + K     K+ L EW+           
Sbjct: 135 ALIGAIYLDQGYEVCYNFIQNVLIKKYVNLETIARKEVNF-KSSLIEWSQKNKLEISFDL 193

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   +  D +P F   V +S      G+  SK+ ++Q AA   +K+ 
Sbjct: 194 IESFTDNDGNPVFQTGVTLSDTQIGVGIGYSKKESQQSAAKMAIKKL 240


>gi|46201860|ref|ZP_00208277.1| COG0571: dsRNA-specific ribonuclease [Magnetospirillum
           magnetotacticum MS-1]
          Length = 230

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 80/211 (37%), Positives = 113/211 (53%), Gaps = 4/211 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L   +G+AFA   LL +ALTH S     +    + YERLEFLGDR+LGL+++ +LF  
Sbjct: 6   ADLPALLGHAFARPELLSQALTHPSTQQHRRSQGSDPYERLEFLGDRVLGLVVAEMLFLR 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+ R  +LV  E  +++A E+ L   + ++             I AD  E++
Sbjct: 66  FPDEAEGALARRHAALVRREAVARIANEIGLGRHLVLAKGESDAGGRTNPGILADACEAV 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I ALY D G  VA  FV   W+    ++    +DAKT LQEWA  +    P YK+  + G
Sbjct: 126 IGALYADAGFAVAAAFVRSRWEPMMEEALAPPKDAKTGLQEWAQGRGKPLPAYKMLGQEG 185

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           P H+P F + V + G+  A G   SKR AEQ
Sbjct: 186 PPHEPTFLMEVSVEGVGSAVGRGASKRVAEQ 216


>gi|332977456|gb|EGK14231.1| ribonuclease III [Psychrobacter sp. 1501(2011)]
          Length = 273

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 7/224 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            ++L+K +GY F + SL + ALTH S     + +YERLEFLGD +LG++I   L+  + +
Sbjct: 40  LASLQKVLGYTFKDTSLAKLALTHRSF--DGKINYERLEFLGDALLGMIIGEALYYQYPN 97

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG L+    +LV  E+   VA++L+L+S + +    RK       SI AD VESLI A
Sbjct: 98  QNEGRLTRMRATLVRQESLVIVAQKLNLSSHLILGVGERKGGGRERASILADTVESLIGA 157

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD             W    + +   +R   DAK+ LQEW        P+Y++    G
Sbjct: 158 IYLDSQSVDVVKACVLDWFAELINNVNDQRVLKDAKSRLQEWLQGHKYELPKYELLETQG 217

Query: 183 PDHDPRFTV--VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              +  F V   VE+    P      S+R AEQ  A +++ +  
Sbjct: 218 NAPNQIFIVRCEVEVPHSTPIIESGESRRIAEQKTAEKMINQLN 261


>gi|134095253|ref|YP_001100328.1| RNase III, ds RNA (partial match) [Herminiimonas arsenicoxydans]
 gi|133739156|emb|CAL62205.1| Ribonuclease III [Herminiimonas arsenicoxydans]
          Length = 328

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  + L+ R+G+ F +  L+++ALTH S S  +    ERLEFLGD IL  ++++LLF+ +
Sbjct: 1   MDVTLLQNRLGHTFKDAVLMQQALTHRSHSSVH---NERLEFLGDSILNCVVASLLFDRY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+L+ F+R+     K       SI AD +E+L 
Sbjct: 58  SKIDEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G   A   +   +             +DAKT LQE+   K    P+Y V    
Sbjct: 118 GAIFLDAGFNAARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  H+  F +   +  L     G   S+RA EQ AA   L+
Sbjct: 178 GAAHNQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALE 218


>gi|259417917|ref|ZP_05741836.1| ribonuclease III [Silicibacter sp. TrichCH4B]
 gi|259346823|gb|EEW58637.1| ribonuclease III [Silicibacter sp. TrichCH4B]
          Length = 228

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 76/210 (36%), Positives = 117/210 (55%), Gaps = 1/210 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +      + R+G+ F++  LL +ALTH S+S   ++  +RLEFLGDR+LGL+++T L
Sbjct: 1   MKLSRDILAFQARLGHEFSSPELLIRALTHPSVSSPNRQDNQRLEFLGDRVLGLVMATAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
             H   A EG+L+ RFN+LV  E C+ VAR++DL + +++             ++  D +
Sbjct: 61  LEHDKHATEGQLAPRFNALVRKEACADVARQIDLGAVLKLGRSEMLSGGRRKQALLGDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+Y D G E A   + + W +R        RD KT LQE+  A+    P Y +  
Sbjct: 121 EAVIAAVYKDAGFEAAQNVILRLWGKRVGTVEDDARDPKTALQEFVQARRQPPPAYVLIA 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           R+GPDH+P FT+   +      Q    SKR
Sbjct: 181 RTGPDHEPVFTIAARLEDGTEEQATAGSKR 210


>gi|322373156|ref|ZP_08047692.1| ribonuclease III [Streptococcus sp. C150]
 gi|321278198|gb|EFX55267.1| ribonuclease III [Streptococcus sp. C150]
          Length = 229

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/212 (32%), Positives = 103/212 (48%), Gaps = 6/212 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+ L    LE+  G  F+ + LLE A TH+S ++ ++       ERLEFLGD  L L+IS
Sbjct: 1   MNQLEQK-LEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+N + +  EGE+S   +++V  E+ +   +      FIR+     K       +I  
Sbjct: 60  VYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQFIRLGKGEEKSGGRERATILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD G+     F++K    +  + +     D KTELQE       V   Y
Sbjct: 120 DLWEAFLGALYLDQGLPAVEKFLNKVMIPKVEEGNFDRVTDYKTELQERLQVNGTVDITY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            V   SGP H   FT+ V + G   + G+  S
Sbjct: 180 TVIEESGPAHAKEFTMQVAVDGKELSTGLGKS 211


>gi|242076428|ref|XP_002448150.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor]
 gi|241939333|gb|EES12478.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor]
          Length = 698

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 98/245 (40%), Gaps = 24/245 (9%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  S LE+ IGY F ++ LL +A  H S +      Y+R+EFLGD +L  L+++ L+
Sbjct: 247 MNYMNISELEELIGYTFKHKGLLLQAFVHPSFNKHSGGCYQRMEFLGDAVLDYLMASYLY 306

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD------------------ 102
           + +   K G+L+   +  ++  + + VA +  +  ++   S                   
Sbjct: 307 SAYPDLKPGQLTDLKSLALNNNSFAYVAVKKSIHKYLIKDSKSLTAAINKFQNYVNLSSS 366

Query: 103 -LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKTE 160
                       +  D+VES + A+ LD G  +     +     +  L       D   E
Sbjct: 367 EKDLLEEPTCPKVLGDIVESCVGAVLLDSGFNLNHVWKLMLMLLKPILSFCGMHIDPMRE 426

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEV 219
           L+E            K T  +G  H     V V I G   +    + + + A +VAA E 
Sbjct: 427 LREICQYNGFELGLPKPTEDNGEFHVK---VEVNIDGKMISCTAANRNSKDARKVAAQEA 483

Query: 220 LKREG 224
           L +  
Sbjct: 484 LLKLK 488



 Score = 38.0 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           + +ALT          S ERLE LGD  L  ++    F  ++   EG+L+ R + +VS  
Sbjct: 65  ILEALTTERCLERI--SLERLEVLGDAFLKYVVGRHNFISYEGLDEGQLTRRRSDIVSNS 122

Query: 83  TCSQVARELDLASFIRVSS 101
              +++   +L  +IR   
Sbjct: 123 NLYELSIRRNLQVYIRDQH 141


>gi|194366747|ref|YP_002029357.1| ribonuclease III [Stenotrophomonas maltophilia R551-3]
 gi|194349551|gb|ACF52674.1| Ribonuclease III [Stenotrophomonas maltophilia R551-3]
          Length = 226

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/217 (34%), Positives = 112/217 (51%), Gaps = 7/217 (3%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
             IG+AF++ +LL++ALTH S         ERLEFLGD I+ ++ +  L+  +  A EG 
Sbjct: 10  DLIGHAFSDPALLKQALTHRSAG---APHNERLEFLGDSIVNMMAAEALYRRWPKADEGA 66

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           ++     LV     + + R L+L   + +     K       SI AD VE+++AA+YLD 
Sbjct: 67  MTRARAELVREGALAVIGRTLELGERLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDA 126

Query: 131 GIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           G E     V  ++    +    SG+  +D KT LQEW  A+    P+Y++   SG DH  
Sbjct: 127 GFEACRAVVLPWFSASIEALPASGRPEKDPKTRLQEWLQARQKALPQYELVSESGDDHAK 186

Query: 188 RFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
            F V   ++   A  +G   S+R AEQ AAA VL++ 
Sbjct: 187 HFRVRCIVADPAASTEGEGASRRLAEQQAAAAVLEQL 223


>gi|126728500|ref|ZP_01744316.1| Ribonuclease III [Sagittula stellata E-37]
 gi|126711465|gb|EBA10515.1| Ribonuclease III [Sagittula stellata E-37]
          Length = 225

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 76/209 (36%), Positives = 121/209 (57%), Gaps = 1/209 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     LE ++G+ F +++LL +A+TH+S+S   +E  +RLEFLGDR+LGL+++  L
Sbjct: 1   MKVSAEIKALEDKLGHTFRDKALLRRAVTHASMSGPGREDNQRLEFLGDRVLGLVMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
             H  +A EG L+ RFN+LV  ETC++VAR + +   +++    +        ++  D +
Sbjct: 61  LAHDRNASEGLLAPRFNALVRKETCAEVARTIGVGDALKLGRSEQMSGGRRKQALLGDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+YLDGG +VA   + + W        +  +DAKT LQEWA  +    P Y    
Sbjct: 121 EAVIAAVYLDGGFDVAQDMILRLWAPLIASVEEDAKDAKTTLQEWAQGRGMTPPSYTEVE 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           RSGPDH P FT+   ++    A+    +K
Sbjct: 181 RSGPDHAPVFTIEARLATGETARATAGNK 209


>gi|313147996|ref|ZP_07810189.1| ribonuclease III [Bacteroides fragilis 3_1_12]
 gi|313136763|gb|EFR54123.1| ribonuclease III [Bacteroides fragilis 3_1_12]
          Length = 294

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 102/223 (45%), Gaps = 11/223 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + +G+   N  L E+AL H S +         + ERLEFLGD IL  ++  +++ HF+
Sbjct: 27  FYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYQHFE 86

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   I+ S+          + +  +  E+ I 
Sbjct: 87  GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHN----SYMYGNAFEAFIG 142

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD G E    F+ K   +  +   K      + K++L EW+           +    
Sbjct: 143 AIYLDRGYECCKQFMQKKIIEPYIDLDKLSRKEVNFKSKLIEWSQKNKMEVSFELIEQFL 202

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             +++P F   V I G+    G   SK+ ++Q AA   LK+  
Sbjct: 203 DKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMALKKIK 245


>gi|242021933|ref|XP_002431397.1| ribonuclease III, putative [Pediculus humanus corporis]
 gi|212516673|gb|EEB18659.1| ribonuclease III, putative [Pediculus humanus corporis]
          Length = 1410

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 14/227 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E+  G  F +  LL +A T  S   ++    S +RLEFLGD +L L+ S  L+ +
Sbjct: 1150 NLTKFEEATGIEFKHIRLLARAFTDRSVGYTNLTLGSNQRLEFLGDSVLQLIASEYLYKY 1209

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T S V  +L +  +   ++             +AD++E+ 
Sbjct: 1210 FPEHHEGHLSLLRSSLVNNKTQSVVCDDLGMTQYAVYAN----PKVELKVKDRADLLEAF 1265

Query: 123  IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA------HAKFGVTPE 174
            + ALY+D G+++   F D  +    +     +   D K++LQ+               P 
Sbjct: 1266 LGALYVDNGLDICRVFCDVCFFPRLQIFIMNQDWNDPKSKLQQCCLTLRTMDNVEPDIPI 1325

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            YKV    GP +   +TV V       A+    S + AE  AA + ++
Sbjct: 1326 YKVVECKGPTNTRVYTVAVYFRNKRLAKATGHSIQQAEMNAAQKAME 1372



 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           LE++I Y F N+ LL+ ALTH S   ++  +
Sbjct: 922 LEEKINYKFKNKFLLQLALTHPSYRENFGTN 952



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 56/128 (43%)

Query: 33   SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD 92
            + S     ERLEFLGD ++  + S  LF+ F   +EG L+    +LV  +  S +A++L+
Sbjct: 1001 TQSNIYHNERLEFLGDAVVEFITSIHLFHIFRDLEEGGLATYRAALVQNQHLSVLAKKLN 1060

Query: 93   LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
            L  F+  +          +    A+  E+L+ AL+LDGGIE A                 
Sbjct: 1061 LDEFMLYAHGSDLCHDLELKHAMANCFEALMGALFLDGGIESADKVFGMTLYGDDEDCSD 1120

Query: 153  FRRDAKTE 160
               +    
Sbjct: 1121 VWFNYPPH 1128


>gi|261820519|ref|YP_003258625.1| ribonuclease III [Pectobacterium wasabiae WPP163]
 gi|261604532|gb|ACX87018.1| ribonuclease III [Pectobacterium wasabiae WPP163]
          Length = 226

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 106/213 (49%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQRKLGYTFQQYELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I             +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDILNIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRA 210
              G  HD  FT+  ++SG + +  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRK 210


>gi|240169618|ref|ZP_04748277.1| ribonuclease III [Mycobacterium kansasii ATCC 12478]
          Length = 241

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 115/230 (50%), Gaps = 10/230 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M+A R  +L   +G   ++  LL  ALTH S ++      + ERLEFLGD +LGL I+  
Sbjct: 1   MTASR-QSLLDALGVDLSD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDE 58

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQ 115
           L++      EG+L+    S+V+ +  + VAR L    L   I +         +  +SI 
Sbjct: 59  LYHRHPDRSEGDLAKLRASVVNTQALADVARNLSDNGLGVHILLGRGEANTGGADKSSIL 118

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTP 173
           AD +ESL+ A+YL  GIEV+   + K +      +       D KT LQE   A+   TP
Sbjct: 119 ADGMESLLGAIYLQHGIEVSRKVILKLFGPLLDAAATLGAGLDWKTSLQELTAARGLGTP 178

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            Y VT  +GPDHD  FT VV +       GM  SK+ AEQ AA+   K  
Sbjct: 179 SYLVTS-TGPDHDKEFTAVVVVMDAEYGSGMGRSKKEAEQKAASAAYKAL 227


>gi|187735104|ref|YP_001877216.1| Ribonuclease III [Akkermansia muciniphila ATCC BAA-835]
 gi|187425156|gb|ACD04435.1| Ribonuclease III [Akkermansia muciniphila ATCC BAA-835]
          Length = 231

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/211 (30%), Positives = 91/211 (43%), Gaps = 4/211 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFN 61
           + ++ LE ++GY F N  LL +ALTH S       + +YERLEFLGD IL L ++  L++
Sbjct: 1   MNHTALEDKLGYRFNNPDLLVQALTHPSTDSKPETRRAYERLEFLGDAILQLAVTQYLYH 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H   + EGEL+      VS     +    L L   I +     +       SI A+  ES
Sbjct: 61  HMPQSPEGELTQLRARTVSRANLGKYGFILGLDKHIALGKGEERAGGRGKNSIIANTFES 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +  A+ LD   E A     +   +   +  S     + K ELQ         TP Y+   
Sbjct: 121 VFGAMSLDSDYETAKAVALRVLHEALDSAASHPKEINPKGELQAILQDILPETPSYETEE 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
           +   D + RF   V   G A   G   SKR 
Sbjct: 181 KGPRDAENRFESRVFWHGHAIGAGSGASKRK 211


>gi|119358263|ref|YP_912907.1| ribonuclease III [Chlorobium phaeobacteroides DSM 266]
 gi|119355612|gb|ABL66483.1| RNAse III [Chlorobium phaeobacteroides DSM 266]
          Length = 273

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 75/213 (35%), Positives = 109/213 (51%), Gaps = 8/213 (3%)

Query: 19  NRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           N  L + ALTH S+ H Y+      +S +RLEFLGD +LGLLIS  LF +F  ++EGELS
Sbjct: 54  NLFLYQTALTHRSVVHDYEHATPAVQSNQRLEFLGDAVLGLLISDYLFRNFPDSREGELS 113

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                +V+ ++ +  AR + L   + +     K+      S  AD  ESLI A+YLD G+
Sbjct: 114 SNRAKIVNRKSLAGFARSIGLGKHLIIGESADKNKIRSSESALADAFESLIGAIYLDKGL 173

Query: 133 EVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           + A  FV K   + A          + K++L E+  +     P YKV    G +H+  FT
Sbjct: 174 DAAFAFVMKQITEHADFRSIVAAEHNYKSQLIEYTQSHHLPPPVYKVIAEEGAEHEKTFT 233

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           + V +      QG    K+ AEQ+AA E + R 
Sbjct: 234 IEVSVDDRQMGQGTAPRKKDAEQLAAREAIDRI 266


>gi|255010202|ref|ZP_05282328.1| ribonuclease III [Bacteroides fragilis 3_1_12]
          Length = 290

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 102/223 (45%), Gaps = 11/223 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + +G+   N  L E+AL H S +         + ERLEFLGD IL  ++  +++ HF+
Sbjct: 23  FYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYQHFE 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   I+ S+          + +  +  E+ I 
Sbjct: 83  GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHN----SYMYGNAFEAFIG 138

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD G E    F+ K   +  +   K      + K++L EW+           +    
Sbjct: 139 AIYLDRGYECCKQFMQKKIIEPYIDLDKLSRKEVNFKSKLIEWSQKNKMEVSFELIEQFL 198

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             +++P F   V I G+    G   SK+ ++Q AA   LK+  
Sbjct: 199 DKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMALKKIK 241


>gi|153005020|ref|YP_001379345.1| ribonuclease III [Anaeromyxobacter sp. Fw109-5]
 gi|152028593|gb|ABS26361.1| Ribonuclease III [Anaeromyxobacter sp. Fw109-5]
          Length = 377

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 117/225 (52%), Gaps = 7/225 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLF 60
            +TLE R+G    +RS    ALTH S  + +++       ERLEFLGD ++ L +S  L 
Sbjct: 17  VATLEARLGLCLGDRSTALAALTHKSYVNEHRDEPGLGDNERLEFLGDAVIDLAVSHRLM 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +A+EG+LS    ++V  +  S++AR LDL S +R+             S+ AD +E
Sbjct: 77  ERFPAAREGDLSKMRAAVVDEQGLSEMARALDLGSLLRLGRGEELTGGRRKASLLADAME 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++AALYLD G+      +D++      ++      RD KT+LQE A ++   TP Y+V 
Sbjct: 137 AVVAALYLDAGLAPVLVLIDRFLGDAFARAAAGTLDRDFKTQLQELAQSRVRATPRYRVV 196

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GPDH   F V  E+ G    +G   SK+ AEQ AA   L   
Sbjct: 197 GEHGPDHSKTFEVETELRGEVVGRGTGRSKKDAEQAAAKIGLDLL 241


>gi|326560591|gb|EGE10972.1| ribonuclease III [Moraxella catarrhalis 103P14B1]
 gi|326565582|gb|EGE15745.1| ribonuclease III [Moraxella catarrhalis 12P80B1]
 gi|326572025|gb|EGE22027.1| ribonuclease III [Moraxella catarrhalis BC8]
 gi|326573972|gb|EGE23922.1| ribonuclease III [Moraxella catarrhalis O35E]
 gi|326574964|gb|EGE24894.1| ribonuclease III [Moraxella catarrhalis 101P30B1]
          Length = 262

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 105/224 (46%), Gaps = 10/224 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L  ++GY F + SLL +ALTH S     ++SYERLEFLGD +L  +I+  LF  +    E
Sbjct: 35  LYAKLGYTFKDVSLLCRALTHRSY--DPKKSYERLEFLGDALLSSIITKALFAQYPKHDE 92

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+    +LV  ET  Q+A  L+L+  + +    RK       SI AD VE+LIAA+YL
Sbjct: 93  GKLTRMRAALVRQETLVQIADHLELSRHLILGVGERKGGGRHRASILADAVEALIAAVYL 152

Query: 129 DGGIEVAGTFVDKYWKQRALK------SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           D         + +                +  +DAK+ LQE         P Y++    G
Sbjct: 153 DNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQTLG 212

Query: 183 PDHDPRFTVV--VEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              +  F V     + G+ P      S+R AEQ  A  ++ +  
Sbjct: 213 SAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQLN 256


>gi|296113914|ref|YP_003627852.1| ribonuclease III [Moraxella catarrhalis RH4]
 gi|295921608|gb|ADG61959.1| ribonuclease III [Moraxella catarrhalis RH4]
          Length = 266

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 105/224 (46%), Gaps = 10/224 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L  ++GY F + SLL +ALTH S     ++SYERLEFLGD +L  +I+  LF  +    E
Sbjct: 39  LYAKLGYTFKDVSLLCRALTHRSY--DPKKSYERLEFLGDALLSSIITKALFAQYPKHDE 96

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+    +LV  ET  Q+A  L+L+  + +    RK       SI AD VE+LIAA+YL
Sbjct: 97  GKLTRMRAALVRQETLVQIADHLELSRHLILGVGERKGGGRHRASILADAVEALIAAVYL 156

Query: 129 DGGIEVAGTFVDKYWKQRALK------SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           D         + +                +  +DAK+ LQE         P Y++    G
Sbjct: 157 DNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQTLG 216

Query: 183 PDHDPRFTVV--VEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              +  F V     + G+ P      S+R AEQ  A  ++ +  
Sbjct: 217 SAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQLN 260


>gi|229820101|ref|YP_002881627.1| ribonuclease III [Beutenbergia cavernae DSM 12333]
 gi|229566014|gb|ACQ79865.1| ribonuclease III [Beutenbergia cavernae DSM 12333]
          Length = 252

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
            + +E+R+G    +  L   A TH S +H      + ERLEFLGD +LG++I+  LF   
Sbjct: 17  LAAVEERLGVGI-DPELAVLAFTHRSFAHEAGGIPTNERLEFLGDSVLGVVITDHLFRSR 75

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             + EGEL+    + VS    + VAREL L   + +             SI +D +E++I
Sbjct: 76  PDSSEGELAKMRAACVSQRALAVVARELRLGEHLLLGKGESATGGRDKDSILSDTLEAVI 135

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSG 182
            A+YL  G+EV    + +        + +           +   A+ G+          G
Sbjct: 136 GAVYLTNGLEVVRDVLLRLLGPSLAVAAELGAGLDWKTSLQELSAELGLGAPLYDVDGVG 195

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDHD RFT  V I+      G   +K+ AEQ AA       
Sbjct: 196 PDHDRRFTAHVVIAERVWGSGTGSAKKHAEQEAARTAYAAL 236


>gi|309263205|ref|XP_001473806.2| PREDICTED: ribonuclease 3-like [Mus musculus]
          Length = 1343

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1075 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1134

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1135 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1193

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1194 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1253

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1254 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1302



 Score = 43.8 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 839 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 869



 Score = 35.7 bits (80), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  + 
Sbjct: 923 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQH 968


>gi|237785779|ref|YP_002906484.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758691|gb|ACR17941.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385]
          Length = 246

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 3/200 (1%)

Query: 23  LEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           L  ALTH S ++      + ERLEFLGD +LGL ++  L+  +    E E+S     +V+
Sbjct: 43  LRLALTHRSFANENGMLPNNERLEFLGDAVLGLSVAERLYRDYPDRTESEISKMRAGVVN 102

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
               + VARE+ L   + +    +        SI AD  E+++ A+YL+ G + A   + 
Sbjct: 103 MYALADVAREIGLGDHVLLGRGEQLTNGKDKNSILADTTEAMLGAIYLEHGFQTAKDVIL 162

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGPDHDPRFTVVVEISGLA 199
           + +K R   +         + +                T  SGP HDP FT  V + G  
Sbjct: 163 RLFKSRIESAPTVGLHMDWKTELLEKIAGRGLGEPEYNTTISGPAHDPHFTSTVSLQGKV 222

Query: 200 PAQGMDCSKRAAEQVAAAEV 219
              G   +K+ AE  AA E 
Sbjct: 223 WGHGEGHTKKEAEHHAAREA 242


>gi|228470695|ref|ZP_04055546.1| ribonuclease III [Porphyromonas uenonis 60-3]
 gi|228307552|gb|EEK16548.1| ribonuclease III [Porphyromonas uenonis 60-3]
          Length = 243

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 6/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLF 60
             ++L  RIG       L   A+ H S +       + + ERLEFLGD +L   I T L+
Sbjct: 11  DLTSLFDRIGIVPVRTDLYLLAMRHRSCTIIGEGGEKLNNERLEFLGDAVLEASICTYLY 70

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +   +  EG+LS   +SLVS    ++V R L L  +I +      +      +    ++ 
Sbjct: 71  HLHPTWDEGDLSKCKSSLVSRPVNNEVGRRLHLERYIIMVPSALDNSVDIYGNTVEALIG 130

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++          +    ++   ++     +    ++ K+EL EW               +
Sbjct: 131 AIYLDQGYARTQDFVRDYILPTYRDMREHTVASIQNYKSELIEWVQKHHLSHEFRLEEHQ 190

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           + P HD  F   V I G    +G   SK+ A+Q AA + L+   
Sbjct: 191 TMP-HD-HFIYSVWIDGKPVGRGAGSSKKRAQQEAARDTLELLK 232


>gi|163856074|ref|YP_001630372.1| ribonuclease III [Bordetella petrii DSM 12804]
 gi|229564350|sp|A9IIJ2|RNC_BORPD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|163259802|emb|CAP42103.1| Ribonuclease III [Bordetella petrii]
          Length = 252

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 110/221 (49%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  +TLE R+ + F N +LLE+ALTH S S       ERLEFLGD +L  +++ +LF  F
Sbjct: 1   MSLATLETRLDHRFGNAALLEQALTHRSHS---ARHNERLEFLGDSVLNFVVAAMLFERF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV   + + + + L+L+ ++R+     K       SI AD VE++ 
Sbjct: 58  PKLDEGDLSRLRANLVKQASLADIGQRLELSQYLRLGEGELKSGGFRRPSILADAVEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A +LDGG + A   + + ++            +DAKT LQE+   +    P Y V    
Sbjct: 118 GAAFLDGGFDTARKVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPLYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  H  +F V   I  L         S+RAAEQ AA   L+
Sbjct: 178 GAAHSQQFEVECAIPALEIKVVAPGASRRAAEQSAAKLALE 218


>gi|257066163|ref|YP_003152419.1| ribonuclease III [Anaerococcus prevotii DSM 20548]
 gi|256798043|gb|ACV28698.1| ribonuclease III [Anaerococcus prevotii DSM 20548]
          Length = 239

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 110/209 (52%), Gaps = 6/209 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFN 61
           +    E +IGY F ++ L++ A THSS ++     ++S ERLEFLGD IL +++S +LF 
Sbjct: 10  KIEEFENKIGYTFNDKDLIDVAFTHSSYTNEVKGKKKSNERLEFLGDSILDMIVSEVLFK 69

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H+    EG L+   + LV   + ++   + ++ +F+   +  R+        ++AD  E+
Sbjct: 70  HYSMKPEGWLTKTRSRLVCTSSFAKACEKFEMTTFLNFGNGERQGGGELKKHVKADTFEA 129

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           + AA+YLD   +    F+ + +K+     +       D KT+LQE+ +AK     +Y + 
Sbjct: 130 VCAAIYLDSSYDNLFKFLKENYKEEALEIINDDSIFNDYKTKLQEYHNAKDRKILKYVLV 189

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              GP+H+  FT+ V++     A G+  +
Sbjct: 190 KEEGPEHEKTFTMAVKLGNKVLAHGVGKN 218


>gi|73953908|ref|XP_854135.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
            isoform 2 [Canis familiaris]
          Length = 1365

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1097 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1156

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1157 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1215

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1216 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1275

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1276 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1324



 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 954  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1013

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 1014 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1073

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1074 LHPLQLQEPNTDRQLIETSPV 1094



 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 870 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 900


>gi|269468620|gb|EEZ80264.1| dsRNA-specific ribonuclease [uncultured SUP05 cluster bacterium]
          Length = 221

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             LE++I Y F + SLL+ ALTH S+      + ERLEFLGD ILGL+IS  L+  F   
Sbjct: 2   KKLEQKIDYQFKDISLLKLALTHRSVGK---NNNERLEFLGDSILGLVISRELYKRFTHV 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS   + LV  +T +Q+A  LDL++ + + S   K       SIQADVVE++  A+
Sbjct: 59  DEGKLSRLRSHLVRGQTLAQLASTLDLSNILILGSGELKSGGFRRESIQADVVEAIFGAV 118

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LD   +   T + K +K+R          +D KT+LQE+   +    P+Y++    G D
Sbjct: 119 FLDSDFDTVNTVILKLYKERLDIINPNDSLKDFKTQLQEYLQKRGNALPKYELIKTVGKD 178

Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FT+   +       +    S + AEQ  A  +L R 
Sbjct: 179 HNAVFTINCSLQDQNMKVKQKATSIKRAEQSCAQALLDRL 218


>gi|190575414|ref|YP_001973259.1| ribonuclease III [Stenotrophomonas maltophilia K279a]
 gi|190013336|emb|CAQ46970.1| putative ribonuclease III [Stenotrophomonas maltophilia K279a]
          Length = 226

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 75/217 (34%), Positives = 112/217 (51%), Gaps = 7/217 (3%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
             IG+AF++ +LL++ALTH S         ERLEFLGD I+ ++ +  L+  +  A EG 
Sbjct: 10  DLIGHAFSDPALLKQALTHRSAG---APHNERLEFLGDSIVNMMAAEALYRRWPKADEGA 66

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           ++     LV     + +AR L L   + +     K       SI AD VE+++AA+YLD 
Sbjct: 67  MTRARAELVREGALAVIARTLQLGERLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDA 126

Query: 131 GIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           G E     V  ++    +    SG+  +D KT LQEW  A+    P+Y++   SG DH  
Sbjct: 127 GFEACRAVVLPWFSASIEALPASGRPEKDPKTRLQEWLQARQKALPQYELVSESGDDHAK 186

Query: 188 RFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
            F V   ++   A  +G   S+R AEQ AAA VL++ 
Sbjct: 187 HFRVRCNVADPAASTEGEGASRRLAEQQAAAAVLEQL 223


>gi|295109853|emb|CBL23806.1| RNAse III [Ruminococcus obeum A2-162]
          Length = 223

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 78/207 (37%), Positives = 107/207 (51%), Gaps = 5/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
             LE+ IGY F N+ LL++ALTHSS ++  +       ERLEFLGD +L L+ S  L+  
Sbjct: 2   EQLEQIIGYTFQNKKLLKQALTHSSYANEKKLGKLGCNERLEFLGDAVLELISSDFLYRK 61

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGEL+ +  SLV   + +  ARE  L  F+ +             SI +D  E+L
Sbjct: 62  FSQIPEGELTKKRASLVCEPSLAYCAREFGLPEFLLLGKGENMTGGRNRDSIVSDATEAL 121

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + A+YLDGG   A  FV  +         +   D+KT LQE    K     EY +T   G
Sbjct: 122 LGAIYLDGGFSNAKKFVLNFILNDIEHK-QLFYDSKTILQELVQEKGLQPIEYVLTGEDG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDHD RFTVVV+++G     G   +K+
Sbjct: 181 PDHDKRFTVVVQVNGQVVGSGTGHTKK 207


>gi|146278605|ref|YP_001168764.1| ribonuclease III [Rhodobacter sphaeroides ATCC 17025]
 gi|189043338|sp|A4WVP5|RNC_RHOS5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|145556846|gb|ABP71459.1| RNAse III [Rhodobacter sphaeroides ATCC 17025]
          Length = 229

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 85/214 (39%), Positives = 121/214 (56%), Gaps = 1/214 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +      E RIG+AF     L +A+TH+S+S + +   +RLEFLGDR+LGL+++  L
Sbjct: 1   MKLSTDLRAFESRIGHAFREPDRLLRAVTHASLSSATRPDNQRLEFLGDRVLGLVMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                +A EG+L+ RFN+LV  ETC+ VARE+ L   +++             ++  D +
Sbjct: 61  LAADKAATEGQLAPRFNALVRKETCAAVAREVGLGDVLKLGRSEMMSGGRRKEALLGDAL 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+YLD G E A   V + W +R  +     RDAKT LQEWA A+    P Y+   
Sbjct: 121 EAVIAAVYLDAGFEAARRLVLRLWGERIAQVEADARDAKTALQEWAQARGLPPPCYEAVD 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           RSGPDH P FTV V +      +    +KR AEQ
Sbjct: 181 RSGPDHAPIFTVEVRLGNGETERSAAGTKRVAEQ 214


>gi|167041438|gb|ABZ06190.1| putative RNase3 domain protein [uncultured marine microorganism
           HF4000_006O13]
 gi|167041995|gb|ABZ06732.1| putative RNase3 domain protein [uncultured marine microorganism
           HF4000_141E02]
          Length = 224

 Score =  120 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 5/216 (2%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E+R  Y F +  LL+ ALTH S S    ++ ERLEFLGD  L L+IS LL+  +    EG
Sbjct: 9   EQRFHYRFKDDILLQTALTHRSHS---VDNNERLEFLGDAALDLVISELLYQSYSEQTEG 65

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            LS   +SLV   T +++A+ELD+  ++ +             S+ +D +E++I A++LD
Sbjct: 66  YLSRMRSSLVKGNTLAELAKELDVGGYLILGKGENTSGGRERLSLLSDTLEAMIGAIFLD 125

Query: 130 GGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           GG       + K +  R      K        + +                RS  DH+  
Sbjct: 126 GGYVAVKNVIIKIFDSRIQALDPKSEHKDHKSVLQEKLQGVKQGLPVYSLVRSVGDHNKT 185

Query: 189 FTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F V   I  G    Q    + R AEQ AA++ L+  
Sbjct: 186 FVVECSIKSGEIVTQASGKTLRVAEQKAASKALQAM 221


>gi|50122200|ref|YP_051367.1| ribonuclease III [Pectobacterium atrosepticum SCRI1043]
 gi|81644286|sp|Q6D219|RNC_ERWCT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|49612726|emb|CAG76176.1| ribonuclease III [Pectobacterium atrosepticum SCRI1043]
          Length = 226

 Score =  120 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 106/213 (49%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQRKLGYTFQQYELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  DRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I             +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDILNIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRA 210
              G  HD  FT+  ++SG + +  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRK 210


>gi|60679772|ref|YP_209916.1| putative ribonuclease III [Bacteroides fragilis NCTC 9343]
 gi|253564432|ref|ZP_04841889.1| ribonuclease 3 [Bacteroides sp. 3_2_5]
 gi|81317155|sp|Q5LIS2|RNC_BACFN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|60491206|emb|CAH05954.1| putative ribonuclease III [Bacteroides fragilis NCTC 9343]
 gi|251948208|gb|EES88490.1| ribonuclease 3 [Bacteroides sp. 3_2_5]
 gi|301161237|emb|CBW20775.1| putative ribonuclease III [Bacteroides fragilis 638R]
          Length = 290

 Score =  120 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 11/230 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57
               YS   + +G+   N  L E+AL H S +         + ERLEFLGD IL  ++  
Sbjct: 16  DRESYSCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGD 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +++ HF+  +EG L+   + +V  ET +++A E+ L   I+ S+          + +  +
Sbjct: 76  IVYQHFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHN----SYMYGN 131

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPE 174
             E+ I A+YLD G E    F+++   +  +   K      + K++L EW+         
Sbjct: 132 AFEAFIGAIYLDRGYECCKQFMERRIIEPYIDLDKLSRKEVNFKSKLIEWSQKNKMEVSF 191

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             +      +++P F   V I G+    G   SK+ ++Q AA   LK+  
Sbjct: 192 ELIEQSLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMTLKKIK 241


>gi|193211801|ref|YP_001997754.1| Ribonuclease III [Chlorobaculum parvum NCIB 8327]
 gi|193085278|gb|ACF10554.1| Ribonuclease III [Chlorobaculum parvum NCIB 8327]
          Length = 276

 Score =  120 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 8/226 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLL 59
            S LE   G   + R +   ALTH S+ H +Q      ES +RLEFLGD +L LLIS  L
Sbjct: 39  LSHLEHLTGRPCSRRQIYRIALTHRSLLHDHQGESERPESNQRLEFLGDAVLDLLISEHL 98

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  +  + EG LS     +V+ +  +  AREL L   + +             S  AD  
Sbjct: 99  FRLYPESDEGHLSSNRAKIVNRKALAAFARELKLGEHLIIGESANLQKIRTSDSALADAF 158

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+L+ A+YLD G++ A  F+  +        +  +   + K+ L E++ +     P Y V
Sbjct: 159 EALVGAIYLDQGLDGAKRFIMNHVITMVDLNRIVEAEFNYKSRLIEFSQSHQLPQPVYTV 218

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               G +H+  F + V  + +   +G    K+ AEQ+AA E +KR 
Sbjct: 219 VAEEGAEHEKTFVIEVSCNDIPLGKGTAPRKKDAEQLAAREAMKRL 264


>gi|291395193|ref|XP_002714143.1| PREDICTED: ribonuclease III, nuclear [Oryctolagus cuniculus]
          Length = 1338

 Score =  120 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1070 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1129

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1130 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1188

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1189 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1248

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1249 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1297



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 927  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 986

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 987  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1046

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1047 LHPLQLQEPNTDRQLIETSPV 1067



 Score = 43.4 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 843 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 873


>gi|146306507|ref|YP_001186972.1| ribonuclease III [Pseudomonas mendocina ymp]
 gi|189043331|sp|A4XSC4|RNC_PSEMY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|145574708|gb|ABP84240.1| RNAse III [Pseudomonas mendocina ymp]
          Length = 229

 Score =  120 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/218 (33%), Positives = 107/218 (49%), Gaps = 11/218 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS    S LE+++G++F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF
Sbjct: 1   MSP-NLSRLERKLGHSFKDQDLMILALTHRSFA---GRNNERLEFLGDAILNFVAGEALF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A+EG+LS     LV  ET + +AR  +L  ++R+ S   K       SI AD +E
Sbjct: 57  ERFPQAREGQLSRLRARLVKGETLAVLARGFELGEYLRLGSGELKSGGFRRESILADALE 116

Query: 121 SLIAALYLDGGIE--VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD G++            +   L      +D KT LQE+  ++    P Y+V 
Sbjct: 117 ALIGAIYLDAGMDAARERVLDWLSGELDGLTLIDTNKDPKTRLQEFLQSRACELPRYEVV 176

Query: 179 FRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213
              G  H   F V  ++   +      G   S+R AEQ
Sbjct: 177 DIQGEPHCRTFMVECQVALLNEKTL--GQGGSRRIAEQ 212


>gi|260775208|ref|ZP_05884106.1| ribonuclease III [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608909|gb|EEX35071.1| ribonuclease III [Vibrio coralliilyticus ATCC BAA-450]
          Length = 225

 Score =  120 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 114/213 (53%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++   + LEK++GY F +  L+  ALTH S    + +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIAKLEKKLGYQFNDAELINLALTHRSA---HGKHNERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE +L   +++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  IEV    +  ++KQR         ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDIEVVRGIILSWYKQRLEAIQPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  H+ +FTV  E++G+ +P  G   S+R 
Sbjct: 177 NIKGEAHNQQFTVSCEVAGVGSPVIGKGTSRRK 209


>gi|288817568|ref|YP_003431915.1| ribonuclease III [Hydrogenobacter thermophilus TK-6]
 gi|288786967|dbj|BAI68714.1| ribonuclease III [Hydrogenobacter thermophilus TK-6]
 gi|308751168|gb|ADO44651.1| ribonuclease III [Hydrogenobacter thermophilus TK-6]
          Length = 232

 Score =  120 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/216 (33%), Positives = 105/216 (48%), Gaps = 9/216 (4%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           GY F ++ LLE+ALTH S +     +SYE LEFLGD ++ L +  +L   F  AKEG+L+
Sbjct: 17  GYTFRDKKLLEQALTHKSYAVEKGVKSYETLEFLGDALINLFVVDILLQEFPQAKEGQLA 76

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                 VS E   Q+A+EL+      +    +K       SI  D  ESL  A+Y+D G 
Sbjct: 77  PMKAFFVSEEFLHQLAQELE--LEKYLLLGGKKGKFKVNVSILGDAFESLWGAIYIDTGR 134

Query: 133 EVAGTFV-----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           +   T        K       +S  +++D KT LQE    ++   P Y+V   SGP H  
Sbjct: 135 DTNFTRSLFERLYKNRIITMARSSDYKKDYKTILQEITQKRWKERPTYRVVSVSGPQHGK 194

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            F V   +  +  A     +K+ AEQ++A  VL+  
Sbjct: 195 VFEVECSVRNIR-AVAAGSNKKEAEQLSAKRVLELL 229


>gi|194335354|ref|YP_002017148.1| Ribonuclease III [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307831|gb|ACF42531.1| Ribonuclease III [Pelodictyon phaeoclathratiforme BU-1]
          Length = 273

 Score =  120 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 111/222 (50%), Gaps = 7/222 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFNHF 63
           L++ +G   +N  L + ALTH S+ H        ES +RLEFLGD +LG+LIS  LF  F
Sbjct: 47  LQQLVGEPVSNLPLYQTALTHRSVVHDPATTSLIESNQRLEFLGDSVLGMLISEYLFRKF 106

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            ++ EGELS     +V++++ +  AR L L   + +             S  AD  ESLI
Sbjct: 107 PTSAEGELSSNRAKIVNSKSLAGFARSLCLGDHLILGESADHHKIRSSESALADAFESLI 166

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLD GI+ A  FV +   +    +       + K+ L E+  +     P Y V   +
Sbjct: 167 GAIYLDKGIKTAFDFVIRSIIEHVNFNTIVAAEHNYKSRLIEYTQSNHLPPPLYTVITET 226

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G +H+  FTV V  SG     G    K+ AEQ+AA E ++R 
Sbjct: 227 GAEHEKSFTVGVSCSGELLGTGTAQRKKDAEQLAAKEAMERI 268


>gi|27364934|ref|NP_760462.1| ribonuclease III [Vibrio vulnificus CMCP6]
 gi|31076872|sp|Q8DC76|RNC_VIBVU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|27361080|gb|AAO09989.1| ribonuclease III [Vibrio vulnificus CMCP6]
          Length = 225

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     L +++GY F +  LL  ALTH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIEKLTRQLGYQFQDDELLNLALTHRSA---NSKHNERLEFLGDSILSFVIADELY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE  L  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  +EV    V  ++  R         ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAVYLDSDLEVVRGIVLNWYTSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  H+  FTV  +I+G+  P  G   S+R 
Sbjct: 177 NIKGEAHNQEFTVECDIAGMDKPVVGRGTSRRK 209


>gi|308388873|gb|ADO31193.1| putative ribonuclease III [Neisseria meningitidis alpha710]
          Length = 267

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/218 (31%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++KR+GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 40  AAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPKL 96

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 97  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 156

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   +  R          +D KT LQE   A+    P+Y++  + G  
Sbjct: 157 SFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 216

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
           +D  F +  ++  L    +    S++AAEQ AA E L+
Sbjct: 217 NDSMFVISCDLGELGFVCRAKGTSRKAAEQSAAKEALQ 254


>gi|85059765|ref|YP_455467.1| ribonuclease III [Sodalis glossinidius str. 'morsitans']
 gi|123519061|sp|Q2NS13|RNC_SODGM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|84780285|dbj|BAE75062.1| ribonuclease III [Sodalis glossinidius str. 'morsitans']
          Length = 226

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L+K++GY F    LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILTNRLQKKLGYTFQQHDLLLQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  QRFPRVDEGDMSRMRATLVRGNTLAEMAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      +  +++ R   +  G  ++D KT LQE+   +    P Y+V 
Sbjct: 118 ALIGGVFLDSDIRTVEKLILDWYRSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYQVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLAQPVVGNGSSRRK 210


>gi|300724126|ref|YP_003713443.1| RNase III, ds RNA [Xenorhabdus nematophila ATCC 19061]
 gi|297630660|emb|CBJ91325.1| RNase III, ds RNA [Xenorhabdus nematophila ATCC 19061]
          Length = 226

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 109/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+A+  + L+ ++GY F    LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNAILTNRLQHKLGYTFTQHDLLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD +E
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGHRRESILADSIE 117

Query: 121 SLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGAIFLDSDIQTIEKIILNWYETRLNEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRA 210
              G  HD  FT+  ++SG   P +G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFEQPVRGVGSSRRK 210


>gi|99082399|ref|YP_614553.1| RNAse III [Ruegeria sp. TM1040]
 gi|99038679|gb|ABF65291.1| RNAse III [Ruegeria sp. TM1040]
          Length = 242

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 76/205 (37%), Positives = 117/205 (57%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
                + R+G+ F++  LL +ALTH S+S   ++  +RLEFLGDR+LGL+++T L  H  
Sbjct: 20  DILAFQARLGHEFSSPELLIRALTHPSVSSPNRQDNQRLEFLGDRVLGLVMATALLEHDK 79

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG+L+ RFN+LV  ETC+ VAR++DL + +++             ++  D +E++IA
Sbjct: 80  DATEGQLAPRFNALVRKETCADVARQIDLGAVLKLGRSEMLSGGRRKQALLGDAMEAVIA 139

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+Y D G E A + + + W +R     +  RD KT LQE+  A+    P Y +  R GPD
Sbjct: 140 AVYRDAGFEAAQSVILRLWGKRVGTVEEDARDPKTALQEFVQARRQPPPAYVLVARKGPD 199

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           H+P FT+   +      Q    SKR
Sbjct: 200 HEPIFTIAARLEDGTEEQATAGSKR 224


>gi|73953920|ref|XP_868251.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
            isoform 8 [Canis familiaris]
          Length = 1297

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1029 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1088

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1089 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1147

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1148 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1207

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1208 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1256



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 886  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 945

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 946  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1005

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1006 LHPLQLQEPNTDRQLIETSPV 1026



 Score = 43.4 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 802 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 832


>gi|73953922|ref|XP_536514.2| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
            isoform 1 [Canis familiaris]
          Length = 1328

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1060 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1119

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1120 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1178

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1179 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1238

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1239 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1287



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 917  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 976

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 977  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1036

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1037 LHPLQLQEPNTDRQLIETSPV 1057



 Score = 43.4 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 833 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 863


>gi|309810296|ref|ZP_07704134.1| ribonuclease III [Dermacoccus sp. Ellin185]
 gi|308435724|gb|EFP59518.1| ribonuclease III [Dermacoccus sp. Ellin185]
          Length = 272

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 94/204 (46%), Gaps = 3/204 (1%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           + SLL +ALTH S ++        ER EFLGD +LGL+++  L+     A EG L+ +  
Sbjct: 34  DESLLRRALTHRSFAYENGGIPHNERQEFLGDAVLGLVVTETLYTDQPDAPEGHLAKQRA 93

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           ++V++   ++VAR L+L  ++ +             SI AD  E++I  ++L GGIE   
Sbjct: 94  AVVNSRALAEVARGLELGEYLLLGRGELATGGRDKDSILADTTEAVIGTVFLSGGIEAGR 153

Query: 137 TFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
             V         +S             + A A  G+     V    GPDHD  FT  V +
Sbjct: 154 RIVHHLIDPLMNRSSTMGAALDWKTSLQEATAAAGLGAPTYVVEGEGPDHDKVFTATVLV 213

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEV 219
            G     G   +K++AE +AA   
Sbjct: 214 DGRTLGAGTGRNKKSAEMIAAENA 237


>gi|148652186|ref|YP_001279279.1| ribonuclease III [Psychrobacter sp. PRwf-1]
 gi|148571270|gb|ABQ93329.1| RNAse III [Psychrobacter sp. PRwf-1]
          Length = 259

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 7/224 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             +L+K++GY+F + SL + ALTH S     + +YERLEFLGD +LG++I   L+  +  
Sbjct: 26  LLSLQKQLGYSFNDTSLAKLALTHRSF--DGKINYERLEFLGDALLGMIIGEALYYQYPK 83

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG L+    +LV  E+   VA++L+L+S++ +    RK       SI AD VESLI A
Sbjct: 84  QDEGRLTRMRATLVRQESLVVVAQKLNLSSYLILGVGERKGGGRERASILADTVESLIGA 143

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD             W    + +   +R   DAK+ LQEW        P Y +    G
Sbjct: 144 IYLDSQSVDTVKACVLDWFAELIDNVNDQRVLKDAKSRLQEWLQGYKFELPNYDLLETQG 203

Query: 183 PDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              +  F V  E+      P      S+R AEQ  A +++ +  
Sbjct: 204 NAPNQVFIVRCEVDVPHTTPIVESGESRRIAEQKTAEKMINQLN 247


>gi|317154737|ref|YP_004122785.1| ribonuclease III [Desulfovibrio aespoeensis Aspo-2]
 gi|316944988|gb|ADU64039.1| ribonuclease III [Desulfovibrio aespoeensis Aspo-2]
          Length = 230

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 4/226 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFN 61
           +    L++RI + F    L+E ALTHSS ++  +     ERLEFLGD +L L IS   + 
Sbjct: 1   MDTGDLQQRIHHRFGQVKLMEAALTHSSHANEQEGDGDNERLEFLGDAVLELCISEEGYR 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A EG+L+   + LV  ++ + +AR LDL   I +             ++ AD  E+
Sbjct: 61  RFPHAPEGQLTRIRSQLVKEKSLAAIARSLDLHRHILLGKGEELQGGRDRDALLADAFEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A++LDGG   A   +   +  +    +     +D K+ LQE A  +F   P Y +  
Sbjct: 121 LMGAVFLDGGFAAARKSILHIFGDKWPEAEMLPETKDYKSRLQEVAQERFRDRPVYVLAG 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            SGP+H+  F V   +   A  +G+  S + AEQ AA   L+   +
Sbjct: 181 TSGPEHEKVFMVDATLPTGACFRGVSSSVKRAEQEAARLGLRALNV 226


>gi|320155320|ref|YP_004187699.1| ribonuclease III [Vibrio vulnificus MO6-24/O]
 gi|56749444|sp|Q7MHN8|RNC_VIBVY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|319930632|gb|ADV85496.1| ribonuclease III [Vibrio vulnificus MO6-24/O]
          Length = 225

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     L +++GY F +  LL  ALTH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIEKLTRQLGYQFQDDELLNLALTHRSA---NSKHNERLEFLGDSILSFVIADELY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE  L  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  +EV    V  ++  R         ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAVYLDSDLEVVRGIVLNWYASRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  H+  FTV  +I+G+  P  G   S+R 
Sbjct: 177 NIKGEAHNQEFTVECDIAGMDKPVVGRGTSRRK 209


>gi|37681015|ref|NP_935624.1| ribonuclease III [Vibrio vulnificus YJ016]
 gi|37199765|dbj|BAC95595.1| dsRNA-specific ribonuclease [Vibrio vulnificus YJ016]
          Length = 259

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     L +++GY F +  LL  ALTH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 35  MNS-PIEKLTRQLGYQFQDDELLNLALTHRSA---NSKHNERLEFLGDSILSFVIADELY 90

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE  L  ++++     K       SI AD VE
Sbjct: 91  HRFPKVNEGDMSRMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVE 150

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  +EV    V  ++  R         ++D KT LQE+   +    P Y VT
Sbjct: 151 AIIGAVYLDSDLEVVRGIVLNWYASRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 210

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  H+  FTV  +I+G+  P  G   S+R 
Sbjct: 211 NIKGEAHNQEFTVECDIAGMDKPVVGRGTSRRK 243


>gi|219848618|ref|YP_002463051.1| Ribonuclease III [Chloroflexus aggregans DSM 9485]
 gi|254807244|sp|B8GAM6|RNC_CHLAD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|219542877|gb|ACL24615.1| Ribonuclease III [Chloroflexus aggregans DSM 9485]
          Length = 229

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 7/209 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS------YQESYERLEFLGDRILGLLISTL 58
           R + LE+ +G  F +R LL+ AL H S+ +            ERLEFLGD +L  + +T 
Sbjct: 4   RLAELERALGITFRDRKLLQTALMHRSLFNEQPHLLSNLSDNERLEFLGDSVLHFVTTTW 63

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  F    E  L+    +LVS +  ++ A  L+L  +  +S           + + AD+
Sbjct: 64  LFQQFPHQNESTLTSWRAALVSTKGLAECAATLNLGQYAFLSRGEDTPKGRQRSKLLADL 123

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            E++I A+YLD G+E A  F++ +  +R         D  T LQE   ++    P+Y + 
Sbjct: 124 FEAVIGAIYLDQGLEAARAFIEPFLHERIGTLQTAVLDPTTRLQEIVQSRHKQLPKYYLI 183

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              GPDH   + + V + G     G   S
Sbjct: 184 DERGPDHQREYVMAVTVEGHEY-TGTGPS 211


>gi|94676727|ref|YP_588731.1| ribonuclease III [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94219877|gb|ABF14036.1| ribonuclease III [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 225

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 76/212 (35%), Positives = 116/212 (54%), Gaps = 7/212 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L  + L+K+IGY F N++LL +ALTH S S+   +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNCL-LNNLQKKIGYYFQNQNLLLQALTHRSASN---KHNERLEFLGDSILSYVIAHALY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++AREL+L++ +R+     K       SI AD VE
Sbjct: 57  QRFQYINEGDMSRMRATLVRGNTLAEIARELNLSTCLRLGIGELKSGGLSRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI +++LD  I     F+   ++ R  K      ++D KT LQE+   +    P Y + 
Sbjct: 117 ALIGSIFLDSNIFTVEKFILNLYRSRLNKIIPGERQKDPKTRLQEYLQGQHMPLPIYIIV 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKR 209
             SG  HD RF +  +++ L  P  G   S+R
Sbjct: 177 QISGETHDQRFIIHCQVNNLANPIIGHGSSRR 208


>gi|77165916|ref|YP_344441.1| ribonuclease III [Nitrosococcus oceani ATCC 19707]
 gi|254434280|ref|ZP_05047788.1| ribonuclease III [Nitrosococcus oceani AFC27]
 gi|90101630|sp|Q3J8D5|RNC_NITOC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|76884230|gb|ABA58911.1| RNAse III [Nitrosococcus oceani ATCC 19707]
 gi|207090613|gb|EDZ67884.1| ribonuclease III [Nitrosococcus oceani AFC27]
          Length = 233

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 79/214 (36%), Positives = 115/214 (53%), Gaps = 8/214 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L +++GY FA  +LL  A+TH S +     + ERLEFLGD IL  LI+  L++ F  
Sbjct: 5   LERLCRKLGYRFAEPALLRHAITHRSATKE---NNERLEFLGDSILNFLIADFLYSGFPR 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EGELS    +LV  ET +++AREL++   + +     K      TSI AD  E++I A
Sbjct: 62  AQEGELSRLRATLVKGETLAELARELEIGDHLILGLGELKSGGYRRTSILADAFEAVIGA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK----FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YLDGG+E     V   ++ R            +D KT LQE+  A+    P+Y+V+  S
Sbjct: 122 VYLDGGLEACRKLVSSLYRDRLETLTNEALLNLKDPKTRLQEYLQARQFPLPDYRVSAVS 181

Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQV 214
           G  HD  F V   ++   P+  G+  S+R AEQ 
Sbjct: 182 GEAHDQVFQVECTLNNTFPSVIGIGRSRRKAEQD 215


>gi|53711509|ref|YP_097501.1| ribonuclease III [Bacteroides fragilis YCH46]
 gi|81383900|sp|Q64ZV9|RNC_BACFR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|52214374|dbj|BAD46967.1| ribonuclease III [Bacteroides fragilis YCH46]
          Length = 290

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 11/230 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57
               YS   + +G+   N  L E+AL H S +         + ERLEFLGD IL  ++  
Sbjct: 16  DRESYSCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGD 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +++ HF+  +EG L+   + +V  ET +++A E+ L   I+ S+          + +  +
Sbjct: 76  IVYQHFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHN----SYMYGN 131

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPE 174
             E+ I A+YLD G E    F+++   +  +   K      + K++L EW+         
Sbjct: 132 AFEAFIGAIYLDRGYECCKQFMERRIIEPYIDLDKLSRKEVNFKSKLIEWSQKNKMEVSF 191

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             +      +++P F   V I G+    G   SK+ ++Q AA   LK+  
Sbjct: 192 ELIEQSLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMTLKKIK 241


>gi|169261416|gb|ACA52288.1| nuclear ribonuclease III protein [Xenopus tropicalis]
          Length = 1325

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1061 KLTKFEEAIGVEFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1120

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F   +   ++ V        AD++ES 
Sbjct: 1121 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAITNDKTKRPVVLRT-KTLADLLESF 1179

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1180 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1239

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1240 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1288



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 57/125 (45%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F   +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 918  NHNERLEFLGDAVVEFLTSVHLYYLFPLLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 977

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+L+ A+YL+GG+E A     +           +    
Sbjct: 978  LYAHGPDLCRESDLRHAMANCFEALMGAVYLEGGLEEAKQLFGRLLFGNQDLRDVWLNYP 1037

Query: 158  KTELQ 162
               LQ
Sbjct: 1038 LHPLQ 1042



 Score = 41.1 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 834 LDKLIGYIFTDRCLLQLAMTHPSHHLNFGMN 864


>gi|171909524|ref|ZP_02924994.1| putative Ribonuclease III [Verrucomicrobium spinosum DSM 4136]
          Length = 238

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/209 (33%), Positives = 100/209 (47%), Gaps = 5/209 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63
            +LE RI Y F    LL++ALTH S+ +  +      +RLE+LGD +L L++S  +++ F
Sbjct: 2   DSLESRIAYQFKQPELLQEALTHPSLPYESKNPQRHNQRLEYLGDAVLQLVLSEAIYHQF 61

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+     LV   T + +AR+L L   + +      +      S  ADV+ES+I
Sbjct: 62  PLDDEGLLTKLRTRLVQTRTLAHIARQLCLGRDLLLGKGEESNGGRSRESTLADVMESII 121

Query: 124 AALYLDGGIE--VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLDGGIE               AL+      + K +LQE    + G TP Y++    
Sbjct: 122 GAVYLDGGIEAVRPFVLQHWSHDLAALQHSPVELNPKGQLQELLQGEGGNTPTYRIIAAE 181

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
           GPDH   F  VV       A G   SK+ 
Sbjct: 182 GPDHQKVFQAVVVWQDRDLAAGTGRSKKE 210


>gi|241761668|ref|ZP_04759755.1| Ribonuclease III [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260754033|ref|YP_003226926.1| ribonuclease III [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|283856457|ref|YP_163110.2| ribonuclease III [Zymomonas mobilis subsp. mobilis ZM4]
 gi|292495068|sp|Q9Z5U2|RNC_ZYMMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|241373976|gb|EER63509.1| Ribonuclease III [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258553396|gb|ACV76342.1| ribonuclease III [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|283775461|gb|AAV89999.2| Ribonuclease III [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 246

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 78/209 (37%), Positives = 121/209 (57%), Gaps = 4/209 (1%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M+   + S +EK +G+   + +L  +A+TH S  +     Y+RLEFLGDR+LGL+I+  L
Sbjct: 24  MNNDAFISWIEKNLGHRPKDPALFLRAMTHPSHGN---SDYQRLEFLGDRVLGLVIANWL 80

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F    EG+LS R NSLVS  +C+ +AR + L  ++R+    R D  +   ++  DV+
Sbjct: 81  YDLFPREPEGKLSRRLNSLVSGASCASIARIVGLPQWLRLGKQARDDGAAASDNVLGDVM 140

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++I A++L+ GIE AG  + KYW           +  K+ LQEWA A     P Y++  
Sbjct: 141 EAMIGAIFLESGIEAAGKLIHKYWAPLVTGQESAPKHPKSALQEWAAAHNRRPPVYEIVS 200

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           R+GP H+P FT+ V I+G+  A     SK
Sbjct: 201 RTGPQHNPCFTIQVSIAGVGEASAEGSSK 229


>gi|301769069|ref|XP_002919953.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3-like [Ailuropoda
            melanoleuca]
          Length = 1369

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1101 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1160

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1161 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1219

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1220 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1279

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1280 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1328



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 958  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1017

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 1018 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1077

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1078 LHPLQLQEPNTDRQLIETSPV 1098



 Score = 43.4 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 874 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 904


>gi|265764902|ref|ZP_06093177.1| ribonuclease III [Bacteroides sp. 2_1_16]
 gi|263254286|gb|EEZ25720.1| ribonuclease III [Bacteroides sp. 2_1_16]
          Length = 290

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 11/230 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57
               YS   + +G+   N  L E+AL H S +         + ERLEFLGD IL  ++  
Sbjct: 16  DRESYSCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGD 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +++ HF+  +EG L+   + +V  ET +++A E+ L   I+ S+          + +  +
Sbjct: 76  IVYQHFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHN----SYMYGN 131

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPE 174
             E+ I A+YLD G E    F+++   +  +   K      + K++L EW+         
Sbjct: 132 AFEAFIGAIYLDRGYECCKQFMERRIIEPYIDLDKLSRKEVNFKSKLIEWSQKNKMEVSF 191

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             +      +++P F   V I G+    G   SK+ ++Q AA   LK+  
Sbjct: 192 ELIEQSLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMTLKKIK 241


>gi|317495799|ref|ZP_07954162.1| ribonuclease III [Gemella moribillum M424]
 gi|316913976|gb|EFV35459.1| ribonuclease III [Gemella moribillum M424]
          Length = 237

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 104/233 (44%), Gaps = 9/233 (3%)

Query: 1   MSALRYSTLEKRIG--YAFANR--SLLEKALTHSSISHSYQ----ESYERLEFLGDRILG 52
           M       L  ++   Y F  +     + A +HSS ++  +     +YERLEFLGD ++ 
Sbjct: 1   MERTYIEKLLNKLNNEYGFNLKFGENFKMAFSHSSYTNEKKIAKHLNYERLEFLGDAVVE 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L  S  LF  F    EGEL+    S+V  +T  + A +L+L   I +     K       
Sbjct: 61  LTTSEFLFKKFPKLAEGELTKLRASIVCEKTLVKYALQLNLDKCIYLGRGEEKMGGRSRA 120

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGV 171
           ++ AD+ ES   ALYL+  +E    F++   + +          D KT LQE+       
Sbjct: 121 ALLADIFESFTGALYLETNLETVKIFLNNTLFTEVEDYEYSSFVDYKTILQEYVFKIKLG 180

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             EYKV    GP H   F   VEI G     G   +K+ +EQ++A + L + G
Sbjct: 181 EIEYKVLDSIGPSHSKTFISAVEIDGKQYGSGTAATKKESEQLSAKQALDKLG 233


>gi|73953918|ref|XP_868248.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
           isoform 7 [Canis familiaris]
          Length = 1016

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 748 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 807

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 808 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 866

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 867 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 926

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 927 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 975



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 605 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 664

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
             +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 665 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 724

Query: 158 KTELQEWAHAKFGVTPEYKVT 178
              LQ           E    
Sbjct: 725 LHPLQLQEPNTDRQLIETSPV 745



 Score = 43.4 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 521 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 551


>gi|297717874|gb|ADI50080.1| ribonuclease III [Candidatus Odyssella thessalonicensis L13]
          Length = 211

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/210 (31%), Positives = 122/210 (58%), Gaps = 5/210 (2%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           ++ + F + SL +KA+TH S        +ERLEFLGDR+LG++++ +L+  F   KEG+L
Sbjct: 2   KLKFTFKDPSLFDKAITHPSFRRRKVNDFERLEFLGDRVLGIIVAEMLYKAFPLEKEGDL 61

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           + R   L+S + C ++A E++L   I+V            +++ +D +E+LI A++LD G
Sbjct: 62  AKRQAVLISRDVCQEIAYEIELHEDIKVVG----TGLDGNSAVLSDAMEALIGAMFLDQG 117

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           +EV    +   W++R   +    +D K+ LQEW  ++    P Y++  ++GP H P F +
Sbjct: 118 LEVTRQHILPLWEKRLAITQAPPKDHKSLLQEWTQSRGLGIPAYELVNQTGPAHAPEFEI 177

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           ++++   +  +    S++ AEQ AA ++L+
Sbjct: 178 LLKVDDHSV-KARGKSRKLAEQEAAKQMLQ 206


>gi|297294054|ref|XP_002804372.1| PREDICTED: ribonuclease 3 isoform 2 [Macaca mulatta]
 gi|297294056|ref|XP_002804373.1| PREDICTED: ribonuclease 3 isoform 3 [Macaca mulatta]
          Length = 1374

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1333



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 963  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1082

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1083 LHPLQLQEPNTDRQLIETSPV 1103



 Score = 43.4 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 879 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 909


>gi|288576266|ref|ZP_05978490.2| ribonuclease III [Neisseria mucosa ATCC 25996]
 gi|288565937|gb|EFC87497.1| ribonuclease III [Neisseria mucosa ATCC 25996]
          Length = 271

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++ ++GY F + +LL++ALTH S    + ++ ER EF+GD IL   ++ +LF+ F   
Sbjct: 44  TAIQNKLGYHFKDTALLQQALTHRSY---HAKNNERFEFVGDSILNYTVAKMLFDAFPKL 100

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 101 TEGELSRLRASLVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 160

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   + +R  +       +D KT LQE   A+    P+Y++  + G  
Sbjct: 161 SFDADFAEAEKVVRHLFAERVKRADFKTQGKDNKTALQEALQARRLALPKYRIEEQIGHA 220

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
           +D  F +  ++  L    +    S++ AEQ AA E L+
Sbjct: 221 NDSMFLISCDLGELGFICKAQGSSRKVAEQQAAKEALQ 258


>gi|332251722|ref|XP_003274996.1| PREDICTED: ribonuclease 3-like [Nomascus leucogenys]
          Length = 1331

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1063 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1122

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1123 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1181

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1182 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1241

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1242 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1290



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 920  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 979

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 980  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1039

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1040 LHPLQLQEPNTDRQLIETSPV 1060



 Score = 43.4 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 836 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 866


>gi|149732818|ref|XP_001500764.1| PREDICTED: ribonuclease type III, nuclear isoform 1 [Equus caballus]
          Length = 1374

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1333



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 963  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1082

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1083 LHPLQLQEPNTDRQLIETSPV 1103



 Score = 43.4 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 879 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 909


>gi|8886722|gb|AAF80558.1|AF189011_1 ribonuclease III [Homo sapiens]
          Length = 1374

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1225 IAALYTDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1333



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 963  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDPFM 1022

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1082

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1083 LHPLQLQEPNTDRQLIETSPV 1103



 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 879 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 909


>gi|77462220|ref|YP_351724.1| RNAse III [Rhodobacter sphaeroides 2.4.1]
 gi|126461082|ref|YP_001042196.1| ribonuclease III [Rhodobacter sphaeroides ATCC 17029]
 gi|221641174|ref|YP_002527436.1| Ribonuclease 3 [Rhodobacter sphaeroides KD131]
 gi|332560101|ref|ZP_08414423.1| ribonuclease III [Rhodobacter sphaeroides WS8N]
 gi|90101641|sp|Q3J5W1|RNC_RHOS4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043337|sp|A3PGF8|RNC_RHOS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807895|sp|B9KSA7|RNC_RHOSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|77386638|gb|ABA77823.1| RNAse III [Rhodobacter sphaeroides 2.4.1]
 gi|126102746|gb|ABN75424.1| RNAse III [Rhodobacter sphaeroides ATCC 17029]
 gi|221161955|gb|ACM02935.1| Ribonuclease 3 [Rhodobacter sphaeroides KD131]
 gi|332277813|gb|EGJ23128.1| ribonuclease III [Rhodobacter sphaeroides WS8N]
          Length = 229

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 85/214 (39%), Positives = 119/214 (55%), Gaps = 1/214 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +      E RIG+ F     L +A+THSS+S   +   +RLEFLGDR+LGL+++  L
Sbjct: 1   MKLSADLKAFEGRIGHQFREPERLLRAVTHSSLSSVTRSDNQRLEFLGDRVLGLVMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                +A EG+L+ RFN+LV  ETC+ VARE+ L   +++             ++  D +
Sbjct: 61  LAADRAASEGQLAPRFNALVRKETCAAVAREVALGDVLKLGRSEMMSGGRRKEALLGDAL 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+YLD G E A   V + W  R  +  +  RDAKT LQEWA A+    P Y+   
Sbjct: 121 EAVIAAVYLDAGFEAARQLVLRLWGARIAQVERDARDAKTALQEWAQARGLPPPTYEAVD 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           RSGPDH P FTV V +      +    +KR AEQ
Sbjct: 181 RSGPDHAPIFTVEVRLGNGETDRAAAGTKRVAEQ 214


>gi|255066864|ref|ZP_05318719.1| ribonuclease III [Neisseria sicca ATCC 29256]
 gi|255048939|gb|EET44403.1| ribonuclease III [Neisseria sicca ATCC 29256]
          Length = 239

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++ ++GY F + +LL++ALTH S    + ++ ER EF+GD IL   ++ +LF+ F   
Sbjct: 12  AAIQNKLGYHFKDTALLQQALTHRSY---HAKNNERFEFVGDSILNYTVAKMLFDAFPKL 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 69  TEGELSRLRASLVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   + +R  +       +D KT LQE   A+    P+Y++  + G  
Sbjct: 129 SFDADFAEAEKVVRHLFAERVKRADFKTQGKDNKTALQEALQARRLALPKYRIEEQIGHA 188

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
           +D  F +  ++  L    +    S++ AEQ AA E L+
Sbjct: 189 NDSMFLISCDLGELGFICKAQGSSRKVAEQQAAKEALQ 226


>gi|297675037|ref|XP_002815506.1| PREDICTED: ribonuclease 3-like [Pongo abelii]
          Length = 1374

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1333



 Score = 48.4 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 963  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1082

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1083 LHPLQLQEPNTDRQLIETSPV 1103



 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 879 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 909


>gi|114600815|ref|XP_526954.2| PREDICTED: ribonuclease III, nuclear isoform 11 [Pan troglodytes]
 gi|114600817|ref|XP_001157424.1| PREDICTED: ribonuclease III, nuclear isoform 4 [Pan troglodytes]
 gi|114600819|ref|XP_001157533.1| PREDICTED: ribonuclease III, nuclear isoform 6 [Pan troglodytes]
 gi|332821657|ref|XP_001157472.2| PREDICTED: ribonuclease 3 isoform 5 [Pan troglodytes]
          Length = 1374

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1333



 Score = 48.4 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 963  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1082

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1083 LHPLQLQEPNTDRQLIETSPV 1103



 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 879 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 909


>gi|155030234|ref|NP_037367.3| ribonuclease 3 isoform 1 [Homo sapiens]
 gi|20139357|sp|Q9NRR4|RNC_HUMAN RecName: Full=Ribonuclease 3; AltName: Full=Protein Drosha; AltName:
            Full=Ribonuclease III; Short=RNase III; AltName:
            Full=p241
          Length = 1374

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1333



 Score = 48.4 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 963  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1082

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1083 LHPLQLQEPNTDRQLIETSPV 1103



 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 879 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 909


>gi|226943497|ref|YP_002798570.1| ribonuclease III [Azotobacter vinelandii DJ]
 gi|259491898|sp|C1DQS2|RNC_AZOVD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226718424|gb|ACO77595.1| ribonuclease III [Azotobacter vinelandii DJ]
          Length = 229

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 74/217 (34%), Positives = 104/217 (47%), Gaps = 10/217 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            +   + LE+++G+ F N+ L+  ALTH S +     + ERLEFLGD IL  +    LF 
Sbjct: 1   MSASLNRLERKLGHTFKNQDLMLLALTHRSFA---SRNNERLEFLGDAILNFVAGEALFE 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  AKEG+LS     LV  ET + +AR  DL   +R+ S   K       SI AD +E+
Sbjct: 58  RFPQAKEGQLSRLRARLVKGETLALLARGFDLGDHLRLGSGELKSGGFRRESILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD G+      V      +  +L      +D KT LQE+  ++    P Y+V  
Sbjct: 118 LIGAIYLDAGLNTVRERVLGWLAGELDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVD 177

Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213
             G  H   F V   +   +      G   S+R AEQ
Sbjct: 178 IQGEPHCRTFFVECRVALLNDKTY--GQGASRRIAEQ 212


>gi|269215480|ref|ZP_06159334.1| ribonuclease III [Slackia exigua ATCC 700122]
 gi|269130967|gb|EEZ62042.1| ribonuclease III [Slackia exigua ATCC 700122]
          Length = 312

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 105/220 (47%), Gaps = 2/220 (0%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLF 60
           + +    +  IG AF +  +L  A+TH S +     + SYERLEFLGD ILG +++   F
Sbjct: 8   SAKLDLAQHVIGVAFDDIDILLAAITHPSATEGKPVKFSYERLEFLGDSILGAIVANEAF 67

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + +    EG L+    +LVS  + S VA +L  A  I   S  R      + S   +V E
Sbjct: 68  HAYPEIDEGGLTRIKVALVSGSSLSDVAAKLGFADIIVFGSSERGTGRRGLHSALENVYE 127

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +L+AAL+LD G++ A  FV +    R         +      +    + G+TP YK+   
Sbjct: 128 ALVAALFLDKGMDGARDFVRRTLIPRMDIEMAREPENPKSALQEKLQEEGITPTYKLVET 187

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GP HD  F   V     A AQG+  +K+ +E  AA   L
Sbjct: 188 QGPPHDRTFVSQVFAGLTALAQGIGRTKKESESQAAKAAL 227


>gi|114600825|ref|XP_001157646.1| PREDICTED: ribonuclease III, nuclear isoform 8 [Pan troglodytes]
          Length = 1343

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1075 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1134

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1135 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1193

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1194 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1253

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1254 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1302



 Score = 48.0 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 932  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 991

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 992  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1051

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1052 LHPLQLQEPNTDRQLIETSPV 1072



 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 848 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 878


>gi|254993548|ref|ZP_05275738.1| ribonuclease III [Listeria monocytogenes FSL J2-064]
          Length = 206

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 7/208 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S
Sbjct: 1   MN--QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LFN +    EG ++    ++V   +  + A  +  + ++R+     K       ++ A
Sbjct: 59  NYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEY 175
           DV ES I ALYLD GI+   TF+++    +    +     D KT+LQE       V  EY
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQG 203
            +   +GP H+  F   V ++G    +G
Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKG 206


>gi|227495870|ref|ZP_03926181.1| ribonuclease III [Actinomyces urogenitalis DSM 15434]
 gi|226834547|gb|EEH66930.1| ribonuclease III [Actinomyces urogenitalis DSM 15434]
          Length = 276

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 102/221 (46%), Gaps = 6/221 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
                +L  R G    +  LL+ ALTH S +H      + ERLEFLGD +L ++++  LF
Sbjct: 17  RTDLESLVYRWGCQIEDP-LLDLALTHRSWAHENGGLPTNERLEFLGDAVLQIIVTEDLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+L+    + VS    + VAR+L L  FI++             SI +D VE
Sbjct: 76  RDHPEVPEGQLAKMRAATVSEPALAGVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           +LI A YL  G+E     V +   +   ++       D KT LQE A      +P Y+VT
Sbjct: 136 ALIGATYLTVGLEPVREVVLRLVSRFLTEAPSRGAGLDWKTSLQELAAVHRLGSPSYRVT 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
              GPDH   FT V  + G    +G   SK+ AE  AA   
Sbjct: 196 SV-GPDHARVFTAVAVVDGQERGEGTGSSKKVAEHDAAEAA 235


>gi|300113378|ref|YP_003759953.1| ribonuclease III [Nitrosococcus watsonii C-113]
 gi|299539315|gb|ADJ27632.1| ribonuclease III [Nitrosococcus watsonii C-113]
          Length = 233

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/218 (35%), Positives = 115/218 (52%), Gaps = 8/218 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
                  L +++GY FA  +LL  A+TH S +     + ERLEFLGD IL  LI+  L++
Sbjct: 1   MTDDLGRLCQKLGYQFAEPALLRHAITHRSAAKE---NNERLEFLGDSILNFLIADFLYS 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS    +LV  ET +++AREL++   + +     K      TSI AD  E+
Sbjct: 58  GFPKAQEGKLSRLRATLVKGETLAELARELEIGDHLILGLGELKSGGYRRTSILADAFEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK----FRRDAKTELQEWAHAKFGVTPEYKV 177
           +I A+YLDGG+E     V   ++ R            +D KT LQE+  A+    P+Y+V
Sbjct: 118 VIGAVYLDGGLEACRQLVSSLYRDRLETLTDEVLLNLKDPKTRLQEYLQARQFPLPDYRV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQV 214
           +  +G  HD  F V   ++   P+  G+  S+R AEQ 
Sbjct: 178 SAVNGEAHDQVFQVECTLNNTFPSVIGIGRSRRKAEQD 215


>gi|241895655|ref|ZP_04782951.1| dsRNA-specific ribonuclease [Weissella paramesenteroides ATCC
           33313]
 gi|241871022|gb|EER74773.1| dsRNA-specific ribonuclease [Weissella paramesenteroides ATCC
           33313]
          Length = 232

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 10/228 (4%)

Query: 6   YSTLEKRI----GYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIST 57
           +  L+  +       F +  LLE+ALT ++  + +       Y+RLEFLGD ++    + 
Sbjct: 2   FKQLQADLATDHHIHFNDLKLLEEALTQANYINEHPGYKGGDYQRLEFLGDAVMQQSTAV 61

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  F +  EG L+    S+V     + ++REL L  ++++             S+  D
Sbjct: 62  YLFKRFPNWDEGRLTELRISMVQTRAFAALSRELHLDRYVQLGRGEELSGARNRDSLLED 121

Query: 118 VVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + E+ I AL+LD G EV   F  +  + +          D K++LQE+      V   Y 
Sbjct: 122 LWEAFIGALFLDQGQEVVMNFLEEMMFVKIDEGFYDQFVDYKSKLQEYLQRHGTVKIAYT 181

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                   +++  FT+ V + G   A G   S + AE++AA +  +  
Sbjct: 182 KLDEQAISNNEQVFTIQVSVDGKPLATGEGKSTKDAEKMAARKAYQSL 229


>gi|111023481|ref|YP_706453.1| ribonuclease III [Rhodococcus jostii RHA1]
 gi|110823011|gb|ABG98295.1| ribonuclease III [Rhodococcus jostii RHA1]
          Length = 252

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 7/225 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
            +++L   +G      SLL  ALTH S ++      + ERLEFLGD +LG+ ++  L+  
Sbjct: 15  DHASLLAALGVEIE-PSLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTEKLYLA 73

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---RKDVCSFMTSIQADVV 119
                EG+L+    S+V+    ++VAR L                        SI AD +
Sbjct: 74  HPDKSEGDLAKIRASIVNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADGM 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVT 178
           ES++ A++L+ GI+ A   V   +     ++ +           +   A+ GV       
Sbjct: 134 ESILGAIHLEHGIDTARRVVLDLFSDLLQRAPRLGAGLDWKTSLQELTAERGVGVPAYEI 193

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +GPDHD  FT  V + G     G+  SK+ AEQ AA+      
Sbjct: 194 TATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAASTAWNAL 238


>gi|114600823|ref|XP_001157589.1| PREDICTED: ribonuclease III, nuclear isoform 7 [Pan troglodytes]
          Length = 1382

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1114 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1173

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1174 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1232

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1233 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1292

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1293 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1341



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 971  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1030

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 1031 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1090

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1091 LHPLQLQEPNTDRQLIETSPV 1111



 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 879 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 909


>gi|296111745|ref|YP_003622127.1| dsRNA-specific ribonuclease RNaseIII [Leuconostoc kimchii IMSNU
           11154]
 gi|295833277|gb|ADG41158.1| dsRNA-specific ribonuclease RNaseIII [Leuconostoc kimchii IMSNU
           11154]
          Length = 233

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 91/230 (39%), Gaps = 7/230 (3%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M    +   L       F N  LL +ALT  +  + + +     Y+RLEFLGD ++ + +
Sbjct: 1   MPQDSFKQHLLSEFNIQFHNEELLREALTQRNYLNEHPDEPGRDYQRLEFLGDSVMQVSV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           +  LF  + S  EG+L+    ++V   + +  +R   L   IR+             S+ 
Sbjct: 61  AEYLFKRYPSWHEGQLTEMRIAMVQTRSFAHFSRVAHLNEGIRLGKGEEMSGARDRDSLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            D+ E+ I ALYLD G E   TF+D+            R        +    K G     
Sbjct: 121 EDIWEAFIGALYLDQGSEAVRTFLDQTLFAAIDTDFFDRFIDFKSRLQEKLQKNGAVDIA 180

Query: 176 KVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             T        ++  F   V +     A+G   S + AE+VAA   LK  
Sbjct: 181 YRTESEKQMIGNEQLFEASVSVDNRELARGTGKSIKDAEKVAARAALKLL 230


>gi|323499981|ref|ZP_08104937.1| ribonuclease III [Vibrio sinaloensis DSM 21326]
 gi|323314947|gb|EGA68002.1| ribonuclease III [Vibrio sinaloensis DSM 21326]
          Length = 225

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 109/213 (51%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++   + LEK++GY F +  L+  ALTH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIAKLEKKLGYQFNDAELIGLALTHRSA---NGKHNERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE +L   +++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  IE     +  ++K R         ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDIEEVRRIILSWYKTRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  H+  FTV  E++G+  P  G   S+R 
Sbjct: 177 NIKGEAHNQEFTVSCEVAGIGQPVIGKGTSRRK 209


>gi|300172910|ref|YP_003772075.1| ribonuclease III [Leuconostoc gasicomitatum LMG 18811]
 gi|299887288|emb|CBL91256.1| Ribonuclease III [Leuconostoc gasicomitatum LMG 18811]
          Length = 233

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 7/230 (3%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           MS   +   L       F + SLL++ALT  +  + +Q+     Y+RLEFLGD ++ + +
Sbjct: 1   MSQDSFKKYLLTEFNIQFNDDSLLQEALTQRNYLNEHQDESGRDYQRLEFLGDSVMQVSV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           +  LF  + +  EG+L+    ++V   + +  +R + L   IR+             S+ 
Sbjct: 61  AEYLFKRYPNWHEGQLTEMRIAMVQTRSFAHFSRVVHLNEGIRLGKGEEMSGARDRDSLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            D+ E+ I ALYLD G+E    F+D+            R        +    K G    Y
Sbjct: 121 EDIWEAFIGALYLDQGLEAVSVFLDQTLFAAIDTDFFDRFIDFKSRLQEKLQKNGAVDIY 180

Query: 176 KVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             T    P   +   F   + +     A+G   S + AE+ AA   LK  
Sbjct: 181 YRTESEQPLAGNTQLFEASISVDDHELARGTGKSIKDAEKAAARTALKLL 230


>gi|296194850|ref|XP_002745134.1| PREDICTED: ribonuclease 3 isoform 1 [Callithrix jacchus]
          Length = 1374

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1333



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 963  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1082

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1083 LHPLQLQEPNTDRQLIETSPV 1103



 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 879 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 909


>gi|320161647|ref|YP_004174872.1| ribonuclease III [Anaerolinea thermophila UNI-1]
 gi|319995501|dbj|BAJ64272.1| ribonuclease III [Anaerolinea thermophila UNI-1]
          Length = 237

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 5/225 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63
                R+G +F +  LL +ALTH S  + + E     ERLEFLGD +L  ++   L+N +
Sbjct: 11  QEFANRLGLSFKSFFLLSRALTHRSYLNEHPEAIEDNERLEFLGDAVLDFVVGAWLYNRY 70

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   + LVS E  S+ AR++DL   +R+     +       ++  D  E++I
Sbjct: 71  PDMPEGDLTRMRSVLVSTEQLSEFARKVDLGRALRLGKGETQAGGRDRPALLCDAFEAVI 130

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLD GIE    F++   ++ A +    +   D K+ LQEWA  +    P Y V   S
Sbjct: 131 GAIYLDSGIEGVRRFIEPMLEKAADEILARQTIEDPKSMLQEWAQGQGFQAPRYIVRSSS 190

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           GP+H  +F V V I+G     G+  SK+AA + AAA+ LKR G+ 
Sbjct: 191 GPEHSKQFEVDVLINGQIYGSGIGSSKQAATKAAAADALKRLGLL 235


>gi|172040468|ref|YP_001800182.1| ribonuclease III [Corynebacterium urealyticum DSM 7109]
 gi|171851772|emb|CAQ04748.1| ribonuclease III [Corynebacterium urealyticum DSM 7109]
          Length = 245

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 4/225 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLL 59
           S   ++ L +  G   ++  +L  ALTH S +H      + ERLEFLGD +LGL ++  L
Sbjct: 18  SKHDHAPLLEAWGIELSD-EMLRLALTHRSFAHENDNVPNNERLEFLGDAVLGLSVAEQL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F    E ++S     +V+    + +AR L L  +I +     K       SI AD V
Sbjct: 77  YTQFPQRSESDISKMRAGVVNMYALAGLARNLGLGEYILLGRGEMKTDGQDKDSILADTV 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVT 178
           E+++ A+YL+ G  VA   V + +K    K+             +    +  +       
Sbjct: 137 EAILGAIYLEHGFAVAKATVLRLFKSMIDKAPTVGLTMDWKTTVQERLREHDLPMPEYEV 196

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             SGP+HD  F   +++ G    +G   +K+ AE  AA  +++  
Sbjct: 197 TSSGPEHDKAFFATLKLDGKERTRGQGRTKKEAEHQAARAMVEEL 241


>gi|170594121|ref|XP_001901812.1| RNase3 domain containing protein [Brugia malayi]
 gi|158590756|gb|EDP29371.1| RNase3 domain containing protein [Brugia malayi]
          Length = 1329

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             + LEK IG  F +  +L KA T  +   ++      +RLEFLGD +L L+ +  L+ HF
Sbjct: 1017 LTELEKNIGITFKHIRVLAKAFTRRNIGFNNLTLGHNQRLEFLGDTVLQLITTDYLYKHF 1076

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-MTSIQADVVESL 122
                EG LS+    LVS  T S +  ++ +  ++     ++K          +AD+VE+ 
Sbjct: 1077 PYHHEGHLSILRTCLVSNRTQSVICDDIGMTKYLVTPKVMQKSGMPVLRVKDKADLVEAF 1136

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV------TPE 174
            + ALY+D G +    F    +  R       +   D K++LQ+       +       PE
Sbjct: 1137 LGALYVDRGFDYCKVFCRICFFPRLKFFIIAQHWNDPKSQLQQCCLTLRQMDGGEPDIPE 1196

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            Y+     GP +   + V V       A G   + + A+  AA   L +
Sbjct: 1197 YRTIAVEGPTNTRIYKVAVYFRKKRLAVGCGHTMQLAQMRAAENALIK 1244



 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%)

Query: 30  SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
                S     ERLEFLGD ++  + +  LF  F    EG L+   +++V  +  + +A+
Sbjct: 864 KKAEQSPLNHNERLEFLGDAVIEFITTIHLFYMFSELDEGGLATYRSTMVQNKNLALLAK 923

Query: 90  ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           ++ L  F+  +        S +    A+  E+++AA+YLD GI+           
Sbjct: 924 KIGLDEFMLYAHGPDLCHESDLRHAMANAFEAMMAAIYLDAGIDECDRIFGHAMF 978



 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQES 39
           ++RI Y F NRSLLE ALTH S   +Y  +
Sbjct: 786 QERIHYVFKNRSLLELALTHPSYRTNYGTN 815


>gi|119631172|gb|EAX10767.1| ribonuclease III, nuclear, isoform CRA_a [Homo sapiens]
 gi|119631173|gb|EAX10768.1| ribonuclease III, nuclear, isoform CRA_a [Homo sapiens]
          Length = 1349

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1081 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1140

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1141 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1199

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1200 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1259

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1260 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1308



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 938  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 997

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 998  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1057

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1058 LHPLQLQEPNTDRQLIETSPV 1078



 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 854 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 884


>gi|226365983|ref|YP_002783766.1| ribonuclease III [Rhodococcus opacus B4]
 gi|226244473|dbj|BAH54821.1| ribonuclease III [Rhodococcus opacus B4]
          Length = 252

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 7/225 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
            +++L   +G      SLL  ALTH S ++      + ERLEFLGD +LG+ ++  L+  
Sbjct: 15  DHASLLAALGVEIE-PSLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTEKLYLA 73

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---RKDVCSFMTSIQADVV 119
                EG+L+    S+V+    ++VAR L                        SI AD +
Sbjct: 74  HPDKSEGDLAKIRASIVNMHALAEVARSLGEGGLGAHLLLGKGEEMTGGRDKPSILADGM 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVT 178
           ES++ A++L+ GI+ A   V   +     ++ +           +   A+ GV       
Sbjct: 134 ESILGAIHLEHGIDTARRVVLDLFSDLLQRAPRLGAGLDWKTSLQELTAERGVGVPAYEI 193

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +GPDHD  FT  V + G     G+  SK+ AEQ AA+      
Sbjct: 194 TATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAASTAWNAL 238


>gi|170720259|ref|YP_001747947.1| ribonuclease III [Pseudomonas putida W619]
 gi|229564376|sp|B1J4E0|RNC_PSEPW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|169758262|gb|ACA71578.1| Ribonuclease III [Pseudomonas putida W619]
          Length = 229

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 72/217 (33%), Positives = 107/217 (49%), Gaps = 10/217 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            +   + LE+++GY F ++  +  ALTH S +     + ERLEFLGD IL  +    LF 
Sbjct: 1   MSASLARLERKLGYTFKDQDQMVLALTHRSYA---GRNNERLEFLGDAILNFVAGEALFE 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS     LV  ET +++AR  DL  ++R+ S   K       SI AD +E+
Sbjct: 58  RFPQAREGQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+YLD  ++ A   V  +              +D KT LQE+  ++    P Y+V  
Sbjct: 118 LIGAIYLDADMQTARERVLAWLTDEFESLTLVDTNKDPKTRLQEFLQSRSCELPRYEVVD 177

Query: 180 RSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213
             G  H   F V  E+   +    ++G   S+R AEQ
Sbjct: 178 IQGEPHCRTFFVECEVVLLNNK--SRGQGVSRRIAEQ 212


>gi|81428322|ref|YP_395322.1| ribonuclease (RNase III) [Lactobacillus sakei subsp. sakei 23K]
 gi|90101628|sp|Q38XR8|RNC_LACSS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78609964|emb|CAI55011.1| Ribonuclease (RNase III) [Lactobacillus sakei subsp. sakei 23K]
          Length = 230

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 100/212 (47%), Gaps = 5/212 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M A   S L  R G  F N +LL++A THSS  + ++E      ERLEFLGD ++ + +S
Sbjct: 1   MDAALVSELRARYGIEFNNLALLDEAFTHSSYVNEHRELGLRDNERLEFLGDAVMEITVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+L+    ++V  ++ S  ++E     +IR+     K+      ++  
Sbjct: 61  EYLYKKYPDWPEGKLTRLRAAIVCTKSFSSFSKEAHFDRYIRLGKGEEKNGARARATLLE 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+   AL+LD G +    FV +    +        + D KT LQE+      +  +Y
Sbjct: 121 DLFEAFNGALFLDQGRDAVVDFVSQVIFPKIEAGEFSDQTDYKTNLQEFLQQDGEIEIDY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           ++    GP HD +F V V +       G+  +
Sbjct: 181 QLLAEVGPSHDRQFEVDVLVGDRVLGSGVGRN 212


>gi|254524282|ref|ZP_05136337.1| ribonuclease III [Stenotrophomonas sp. SKA14]
 gi|219721873|gb|EED40398.1| ribonuclease III [Stenotrophomonas sp. SKA14]
          Length = 226

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 73/217 (33%), Positives = 110/217 (50%), Gaps = 7/217 (3%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
             IG+ F + +LL++ALTH S         ERLEFLGD I+ ++ +  L+  +  A EG 
Sbjct: 10  DLIGHPFRDAALLKQALTHRSAG---APHNERLEFLGDSIVNMMAAEALYRRWPKADEGA 66

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           ++     LV     + + R L+L   + +     K       SI AD VE+++AA+YLD 
Sbjct: 67  MTRARAELVREGALAVIGRSLELGERLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDA 126

Query: 131 GIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           G E     V  ++    +    SG+  +D KT LQEW  A+    P+Y++   SG DH  
Sbjct: 127 GFEACRAVVLPWFSASIEALPASGRPEKDPKTRLQEWLQARQKALPQYELVSESGDDHAK 186

Query: 188 RFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
            F V   ++   A  +G   S+R AEQ AAA VL++ 
Sbjct: 187 HFRVRCNVADPAASTEGEGASRRLAEQQAAAAVLEQL 223


>gi|70728453|ref|YP_258202.1| ribonuclease III [Pseudomonas fluorescens Pf-5]
 gi|68342752|gb|AAY90358.1| ribonuclease III [Pseudomonas fluorescens Pf-5]
          Length = 225

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 76/212 (35%), Positives = 108/212 (50%), Gaps = 10/212 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+++GY+F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  F  A
Sbjct: 2   SRLERQLGYSFKDQELMLLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFERFPQA 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+LI A+
Sbjct: 59  REGQLSRLRARLVKGETLAVLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 118

Query: 127 YLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G+E A   V  +              +D KT LQE+  ++    P Y+V    G  
Sbjct: 119 YLDAGMETARDRVLSWLASEFESLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEP 178

Query: 185 HDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213
           H   F V  E+   +    ++G   S+R AEQ
Sbjct: 179 HCRTFFVECEVTLLNEK--SRGQGVSRRIAEQ 208


>gi|40455575|gb|AAR85911.1| ribonuclease III-like protein [Rattus norvegicus]
          Length = 288

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 20  KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 79

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 80  FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 138

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 139 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 198

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 199 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 247


>gi|148272538|ref|YP_001222099.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830468|emb|CAN01403.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 238

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 93/207 (44%), Gaps = 3/207 (1%)

Query: 20  RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             LLE ALTH S ++ +      ERLEFLGD ILG  ++ +L+       EGEL+ R  S
Sbjct: 26  PELLELALTHRSYAYEHGGIPHNERLEFLGDSILGQAVTVMLYLENPDLDEGELAKRRAS 85

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           LVS+   ++VA  + L   + +            +SI AD VE++I A YLD G E A  
Sbjct: 86  LVSSVALAEVATRIGLGEHLLLGRGEELTGGRAKSSILADTVEAIIGASYLDAGGEAATG 145

Query: 138 FVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            V +          +F          + + A+ G+         SGPDH  RF  VV + 
Sbjct: 146 LVLRLIAPLLEDPARFGAAMDPKTALQESAARQGLPAPVYDVSDSGPDHSKRFHAVVTVG 205

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 G   SK+ AE  AA E   R 
Sbjct: 206 DAVRTTGEGSSKKQAEMTAALEAWTRL 232


>gi|170781177|ref|YP_001709509.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
 gi|169155745|emb|CAQ00866.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
          Length = 238

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 93/207 (44%), Gaps = 3/207 (1%)

Query: 20  RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             LLE ALTH S ++ +      ERLEFLGD ILG  ++ +L+       EGEL+ R  S
Sbjct: 26  PELLELALTHRSYAYEHGGIPHNERLEFLGDSILGQAVTVMLYLENPDLDEGELAKRRAS 85

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           LVS+   ++VA  + L   + +            +SI AD VE++I A YLD G E A  
Sbjct: 86  LVSSVALAEVATRIGLGEHLLLGRGEELTGGRAKSSILADTVEAIIGASYLDAGGEAATG 145

Query: 138 FVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            V +          +F          + + A+ G+         SGPDH  RF  VV + 
Sbjct: 146 LVLRLIAPLLEDPARFGAAMDPKTALQESAARQGLPAPAYDVSDSGPDHSKRFHAVVTVG 205

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 G   SK+ AE  AA E   R 
Sbjct: 206 DAVRTTGEGSSKKQAEMTAALEAWTRL 232


>gi|104783263|ref|YP_609761.1| ribonuclease III [Pseudomonas entomophila L48]
 gi|122402118|sp|Q1I5V8|RNC_PSEE4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|95112250|emb|CAK16977.1| ribonuclease III, ds RNA [Pseudomonas entomophila L48]
          Length = 229

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 72/215 (33%), Positives = 106/215 (49%), Gaps = 6/215 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            +     LE+++GY F N+  +  ALTH S +     + ERLEFLGD IL  ++   LF 
Sbjct: 1   MSASLDRLERKLGYTFKNQDQMLLALTHRSYA---GRNNERLEFLGDAILNFVVGEALFE 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS     LV  ET +++AR  DL  ++R+ S   K       SI AD +E+
Sbjct: 58  RFPQAREGQLSRLRARLVKGETLARLARGFDLGDYLRLGSGELKSGGFRRESILADALEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+Y D  ++ A   +  +              +D KT LQE+  ++    P Y+V  
Sbjct: 118 LIGAIYQDADMQTARERILAWLTDEFDGLTLVDTNKDPKTRLQEFLQSRACELPRYEVVD 177

Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
             G  H   F V  E+  L   ++G   S+R AEQ
Sbjct: 178 IQGEPHCRTFFVECEVVLLNKKSRGQGVSRRIAEQ 212


>gi|126321160|ref|XP_001375491.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 1388

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1108 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1167

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1168 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1226

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1227 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1286

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1287 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1335



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 965  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1024

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 1025 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDKDLREVWLNYP 1084

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1085 LHPLQLQEPNTDRQLIETSPV 1105



 Score = 43.4 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 881 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 911


>gi|320352215|ref|YP_004193554.1| RNAse III [Desulfobulbus propionicus DSM 2032]
 gi|320120717|gb|ADW16263.1| RNAse III [Desulfobulbus propionicus DSM 2032]
          Length = 243

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 66/209 (31%), Positives = 105/209 (50%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNH 62
              L++RIGY F +  LL+ +L HSS +          E  EFLGD +L L +  +LF  
Sbjct: 16  LHELQERIGYRFRDLRLLQLSLIHSSFAFERLDDGRHNETQEFLGDAVLDLTVGYILFVR 75

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F   +EG+L+   ++LV+ +  +  ARE+DL  ++ +            +SI +   E+L
Sbjct: 76  FPEMREGKLTRIRSALVNEQGLADRAREIDLGKYLLLGKGENASNGRDKSSILSCAYEAL 135

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL+LDGG + A  FV ++++    +  +     DAK+ LQE    +F   PEY +T  
Sbjct: 136 VGALFLDGGYDQALAFVRRFFEPHIDQHQEQLVSADAKSSLQELLQERFNEGPEYMLTGE 195

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H   F++ V   G     G   SK+
Sbjct: 196 EGPAHARLFSITVTFQGEELGSGRASSKK 224


>gi|297294058|ref|XP_001085611.2| PREDICTED: ribonuclease 3 isoform 1 [Macaca mulatta]
          Length = 1337

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1187

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1247

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1248 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1296



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 926  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 986  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1045

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1046 LHPLQLQEPNTDRQLIETSPV 1066



 Score = 43.4 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 842 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 872


>gi|145219011|ref|YP_001129720.1| RNAse III [Prosthecochloris vibrioformis DSM 265]
 gi|145205175|gb|ABP36218.1| RNAse III [Chlorobium phaeovibrioides DSM 265]
          Length = 259

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 7/216 (3%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTLLFNHFDS 65
           + +G    +      ALTH S  H         S +RLEFLGD ILGL+I+  LF     
Sbjct: 36  RLLGRKPGDMRFYTTALTHRSAVHDPSTPLNTHSNQRLEFLGDAILGLVITDYLFRELPD 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           + EGELS     +V+ ++ +  AR + +   + +             S  AD +E+ I A
Sbjct: 96  SPEGELSNTRAKIVNRKSLAGFARSIKIGDHLILGESADHAKIRVSESTLADALEAFIGA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ++LD GI  A +F++++  +    +       + K+ L E   A     P Y V    G 
Sbjct: 156 IWLDRGISAATSFINEHVIEHRRFNTLITAENNHKSRLIEHTQALHLPPPRYSVISEEGA 215

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +H+ RFTV V  +G    +G+   K+ AEQ AAAE 
Sbjct: 216 EHEKRFTVEVSCNGKVLGRGIAARKKDAEQHAAAEA 251


>gi|297463231|ref|XP_002702571.1| PREDICTED: ribonuclease III, nuclear [Bos taurus]
 gi|297487774|ref|XP_002696435.1| PREDICTED: ribonuclease III, nuclear-like isoform 1 [Bos taurus]
 gi|296475747|gb|DAA17862.1| ribonuclease III, nuclear-like isoform 1 [Bos taurus]
          Length = 1367

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E  IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1099 KLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1158

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1159 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1217

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1218 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1277

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1278 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1326



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 956  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1015

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 1016 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1075

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1076 LHPLQLQEPNTDRQLIETSPV 1096



 Score = 43.4 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 872 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 902


>gi|149732820|ref|XP_001500777.1| PREDICTED: ribonuclease type III, nuclear isoform 2 [Equus caballus]
          Length = 1337

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1187

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1247

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1248 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1296



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 926  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 986  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1045

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1046 LHPLQLQEPNTDRQLIETSPV 1066



 Score = 43.0 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 842 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 872


>gi|296194852|ref|XP_002745135.1| PREDICTED: ribonuclease 3 isoform 2 [Callithrix jacchus]
          Length = 1337

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1187

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1247

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1248 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1296



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 926  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 986  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1045

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1046 LHPLQLQEPNTDRQLIETSPV 1066



 Score = 43.0 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 842 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 872


>gi|254511570|ref|ZP_05123637.1| ribonuclease III [Rhodobacteraceae bacterium KLH11]
 gi|221535281|gb|EEE38269.1| ribonuclease III [Rhodobacteraceae bacterium KLH11]
          Length = 225

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 1/209 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +      ++R+GY F++  LL ++LTH S+S S +   +RLEFLGDR+LGL+++T L
Sbjct: 1   MKLSAEIKAFQQRLGYEFSDPELLVRSLTHGSVSSSTRPDNQRLEFLGDRVLGLVMATAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                 A EG+L+ RFN+LV  E C+ VAR++DL + +++             ++  D +
Sbjct: 61  LEADKKASEGQLAPRFNALVRKEACADVARQIDLGAVLKLGRSEMLSGGRRKQALLGDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+Y D G E A   +   W  R        RDAKT LQEWA A+    P Y    
Sbjct: 121 EAVIAAIYRDAGFEAARDVILALWGDRIHMVEADARDAKTSLQEWAQARGQKPPAYVEVK 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           R+GPDH P FT+   +     AQ    SK
Sbjct: 181 RTGPDHAPVFTIAARLQDGTEAQATAGSK 209


>gi|155030236|ref|NP_001093882.1| ribonuclease 3 isoform 2 [Homo sapiens]
 gi|114600827|ref|XP_001157762.1| PREDICTED: ribonuclease 3 isoform 10 [Pan troglodytes]
          Length = 1337

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1187

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1247

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1248 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1296



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 926  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 986  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1045

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1046 LHPLQLQEPNTDRQLIETSPV 1066



 Score = 43.0 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 842 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 872


>gi|194306545|ref|NP_081075.3| ribonuclease 3 [Mus musculus]
 gi|194328670|ref|NP_001123621.1| ribonuclease 3 [Mus musculus]
 gi|81882947|sp|Q5HZJ0|RNC_MOUSE RecName: Full=Ribonuclease 3; AltName: Full=Protein Drosha; AltName:
            Full=Ribonuclease III; Short=RNase III
 gi|57242920|gb|AAH88999.1| Rnasen protein [Mus musculus]
 gi|74184402|dbj|BAE25729.1| unnamed protein product [Mus musculus]
 gi|74215950|dbj|BAE28629.1| unnamed protein product [Mus musculus]
          Length = 1373

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1105 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1164

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1165 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1223

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1224 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1283

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1284 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1332



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 962  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1021

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 1022 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1081

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1082 LHPLQLQEPNTDRQLIETSPV 1102



 Score = 43.0 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 878 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 908


>gi|114600829|ref|XP_001157712.1| PREDICTED: ribonuclease III, nuclear isoform 9 [Pan troglodytes]
          Length = 1306

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1038 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1097

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1098 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1156

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1157 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1216

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1217 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1265



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 895  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 954

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 955  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1014

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1015 LHPLQLQEPNTDRQLIETSPV 1035



 Score = 43.0 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 811 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 841


>gi|254507535|ref|ZP_05119669.1| ribonuclease III [Vibrio parahaemolyticus 16]
 gi|219549605|gb|EED26596.1| ribonuclease III [Vibrio parahaemolyticus 16]
          Length = 225

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 111/213 (52%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++   + LEK++GY F +  L+  ALTH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIAKLEKKVGYQFNDAELINLALTHRSA---NGKHNERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE +L   +++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  IEV  + +  +++ R         ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDIEVVRSIILSWYQSRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  H+  FTV  E++G+  P  G   S+R 
Sbjct: 177 NIKGEAHNQEFTVSCEVAGIGQPVIGKGTSRRK 209


>gi|83814847|ref|YP_445467.1| ribonuclease III [Salinibacter ruber DSM 13855]
 gi|83756241|gb|ABC44354.1| ribonuclease III [Salinibacter ruber DSM 13855]
          Length = 248

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 100/226 (44%), Gaps = 6/226 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
           +  + +E+ +G    + S   +ALTH S+   +      S ERLEFLGD +L + +  +L
Sbjct: 16  VDPAAIEQLVGRPVDDLSHYRRALTHRSLLRVHPARTFRSNERLEFLGDALLDVFVGEVL 75

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F    EG L+     LVS    +  AR L L   + +S +  +       SI AD  
Sbjct: 76  YDRFPEKDEGALTRLRARLVSERPLATYARGLGLGPHLLMSENAAEGDGRDNPSILADAF 135

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + A+YLD G E A  FV                  + K++L E   A     P Y V
Sbjct: 136 EAFVGAVYLDLGHEAARGFVQDRVLAPVDLEDVATRDDNYKSQLLEHLQALGRPQPTYHV 195

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP HD  FTV V +   A  +G   SK+ AEQ AA   L   
Sbjct: 196 VEEKGPSHDKTFTVEVRVGDAAYERGTAGSKQDAEQQAARRTLDEM 241


>gi|262273710|ref|ZP_06051523.1| ribonuclease III [Grimontia hollisae CIP 101886]
 gi|262222125|gb|EEY73437.1| ribonuclease III [Grimontia hollisae CIP 101886]
          Length = 224

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 74/207 (35%), Positives = 110/207 (53%), Gaps = 6/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L++RIGY F + +LL  ALTH S S       ERLEFLGD IL  +++  L++ F + 
Sbjct: 6   NRLQRRIGYTFNDTTLLSLALTHRSAS---GNHNERLEFLGDSILSFVVADDLYHRFPNV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE +L   +++     K       SI AD VE++I A+
Sbjct: 63  DEGDMSRMRATLVRGNTLAELGREFELGDVLQLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E     V  ++KQR         ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSSLETVRGIVLNWYKQRLETIQPGANQKDPKTRLQEFLQGRRKPLPAYNVTKVQGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210
           H+ +FTV  E++GL  P  G   S+R 
Sbjct: 183 HNQQFTVECEVAGLDRPVVGKGSSRRK 209


>gi|298245671|ref|ZP_06969477.1| ribonuclease III [Ktedonobacter racemifer DSM 44963]
 gi|297553152|gb|EFH87017.1| ribonuclease III [Ktedonobacter racemifer DSM 44963]
          Length = 251

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 109/223 (48%), Gaps = 4/223 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
               LE  +   F +RSLL +A+TH S       ++SY+ LEFLGD I+   +   ++  
Sbjct: 9   NLLALEALLQVTFHDRSLLLRAITHHSCCTETALRDSYDTLEFLGDAIISAHVVEYIYRS 68

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL-RKDVCSFMTSIQADVVES 121
           F +A EG+++   + +VS    + + ++L L  FIRV     R        S+ ADV+E+
Sbjct: 69  FPNASEGDMTALKSEVVSRRVFALIGQQLGLFPFIRVDIANLRTFNERSRDSLCADVLEA 128

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           L+ A+++D G EVA  FV +       +   +   + K  LQ+    + G  P Y+V  +
Sbjct: 129 LVGAIHIDQGSEVARDFVARAILPMVEQISVQADTNPKGRLQKIILQRTGSLPRYRVLEQ 188

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SG ++D  F V V         G   S + A ++AA E L+  
Sbjct: 189 SGRNNDRIFLVGVYDQETLLGLGKASSIKEAGRLAAREALEAL 231


>gi|71064909|ref|YP_263636.1| ribonuclease III [Psychrobacter arcticus 273-4]
 gi|90101639|sp|Q4FUV6|RNC_PSYA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71037894|gb|AAZ18202.1| RNAse III [Psychrobacter arcticus 273-4]
          Length = 265

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 110/224 (49%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           R + L +++GY F + SL + ALTH S     +++YERLEFLGD +LG+++   L++ + 
Sbjct: 33  RLAVLTRKLGYVFNDLSLAKLALTHRSFDS--KKNYERLEFLGDALLGMIVGEALYHRYP 90

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG L+    +LV  E+   +A+ L+L++ + +    RK       SI AD VESLI 
Sbjct: 91  TQNEGRLTRMRATLVRQESLVIIAQNLELSNQLILGVGERKGGGRNRASILADAVESLIG 150

Query: 125 ALYLDGGIEVAGTFV---DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD                     +   K  +DAK+ LQEW  +K    P Y++    
Sbjct: 151 AIYLDSQDMNITRECVLSWYGDLIDNVNDQKALKDAKSRLQEWLQSKQFDLPHYELMETR 210

Query: 182 GPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G      F V  +++            S+R AEQ AA  ++ + 
Sbjct: 211 GNAPHQLFVVRCQVNIINCPDITESGESRRIAEQKAAELMINQL 254


>gi|37994704|gb|AAH60265.1| Rnasen protein [Mus musculus]
          Length = 1231

 Score =  118 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 963  KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1022

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1023 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1081

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1082 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1141

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1142 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1190



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 820 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 879

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
             +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 880 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 939

Query: 158 KTELQEWAHAKFGVTPEYKVT 178
              LQ           E    
Sbjct: 940 LHPLQLQEPNTDRQLIETSPV 960



 Score = 43.0 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 736 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 766


>gi|323491198|ref|ZP_08096384.1| ribonuclease III [Vibrio brasiliensis LMG 20546]
 gi|323314566|gb|EGA67644.1| ribonuclease III [Vibrio brasiliensis LMG 20546]
          Length = 225

 Score =  118 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 111/213 (52%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++   + LEK++GY F +  L+  ALTH S    + +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIAKLEKKLGYQFNDAELISLALTHRSA---HGKHNERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE +L   +++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  IEV    +  ++K R         ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDIEVVRGIILSWYKTRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  H+  FTV  +++G+  P  G   S+R 
Sbjct: 177 NIKGEAHNQEFTVSCDVAGIGQPVIGKGTSRRK 209


>gi|294507352|ref|YP_003571410.1| Ribonuclease III [Salinibacter ruber M8]
 gi|294343680|emb|CBH24458.1| Ribonuclease III [Salinibacter ruber M8]
          Length = 243

 Score =  118 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 99/226 (43%), Gaps = 6/226 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
           +  + +E+ +G    + S   +ALTH S+   +      S ERLEFLGD +L + +  +L
Sbjct: 11  VDPAAIEQLVGRPVDDLSHYRRALTHRSLLRVHPARTFRSNERLEFLGDALLDVFVGEVL 70

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F    EG L+     LVS    +  AR L L   + +S +  +       SI AD  
Sbjct: 71  YDRFPEKDEGALTRLRARLVSERPLATYARGLGLGPHLLMSENAAEGDGRDNPSILADAF 130

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + A+YLD G E A  FV                  + K++L E   A     P Y V
Sbjct: 131 EAFVGAVYLDLGHEAARGFVQDRVLAPVDLEDVATRDDNYKSQLLEHLQALGRPQPTYHV 190

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP HD  FTV V +      +G   SK+ AEQ AA   L   
Sbjct: 191 VEEKGPSHDKTFTVEVRVGDADYERGTAGSKQDAEQQAARRTLDEM 236


>gi|163846691|ref|YP_001634735.1| ribonuclease III [Chloroflexus aurantiacus J-10-fl]
 gi|222524496|ref|YP_002568967.1| Ribonuclease III [Chloroflexus sp. Y-400-fl]
 gi|254807243|sp|A9WJ69|RNC_CHLAA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807245|sp|B9LB70|RNC_CHLSY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|163667980|gb|ABY34346.1| Ribonuclease III [Chloroflexus aurantiacus J-10-fl]
 gi|222448375|gb|ACM52641.1| Ribonuclease III [Chloroflexus sp. Y-400-fl]
          Length = 244

 Score =  118 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 7/212 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS------YQESYERLEFLGDRILGLLI 55
            + R + LE+ IG  F +R+LL+ A  H S+ +       +    ERLEFLGD +L  + 
Sbjct: 1   MSDRLAELERAIGITFRDRTLLQTAFMHRSLFNEQPHLLNHLTDNERLEFLGDSVLHFVT 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           +T LF  F    E  L+    +LVS +  ++ A + +L  +  +S             + 
Sbjct: 61  TTWLFETFPDQDEATLTNWRAALVSTKGLAECAAQFNLGQYAYLSRGEDNPGGRSRQKLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           AD+ E+L+ A+YLD G+E A  F+  +W+ R  +      D  T LQE   A+F   P+Y
Sbjct: 121 ADLFEALVGAIYLDQGLETARAFIVPFWQARIEQIIHIDLDPTTRLQELMQARFKQLPDY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            +    GP+H   + + V ++G     G   S
Sbjct: 181 SIEEERGPEHQREYVMAVTVAGRKF-TGSGSS 211


>gi|159898112|ref|YP_001544359.1| ribonuclease III [Herpetosiphon aurantiacus ATCC 23779]
 gi|159891151|gb|ABX04231.1| Ribonuclease III [Herpetosiphon aurantiacus ATCC 23779]
          Length = 234

 Score =  118 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 66/209 (31%), Positives = 106/209 (50%), Gaps = 5/209 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLL 59
           +  + L+  +GY F + + L  A+ H S  H +     ES ERLEFLGD +L  +  + L
Sbjct: 1   MDLNKLQAELGYTFNDLNFLRAAMLHRSYVHEHPEAGSESNERLEFLGDALLNFICGSFL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F+ F    EG+L+     LV   T + +AR  +L S++++S    +       ++ AD  
Sbjct: 61  FHEFPELGEGDLTKTRAMLVQTRTLAGLARRFNLGSYVQISRGEERAKARERDNLLADAF 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+L+AA+ LDGG E A  FV    K       +  +D KT+LQ++   +  +TP Y+   
Sbjct: 121 EALLAAIALDGGWEAARNFVLPLLKSVKASGVQ-NQDYKTDLQQYVQGRINLTPSYREVN 179

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            +GPDH+  +T+ V         G+  SK
Sbjct: 180 VTGPDHERTWTIEVWAGDALLGVGVGTSK 208


>gi|291456081|ref|ZP_06595471.1| ribonuclease III [Bifidobacterium breve DSM 20213]
 gi|291382490|gb|EFE90008.1| ribonuclease III [Bifidobacterium breve DSM 20213]
          Length = 247

 Score =  118 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 97/230 (42%), Gaps = 10/230 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + L + +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF    
Sbjct: 18  NELLEALGTTIS-PDLLVQALTHRSFSHEHPGVSNYERLEFLGDAVLELVTTETLFTIHP 76

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS +  S +A+ +L +  +I +     +   +   SI  D+VESLI
Sbjct: 77  DMNEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 136

Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A +L+ GI+ A   + +      A  + +                 G          SG
Sbjct: 137 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHHLGKAEPVYHMEVSG 196

Query: 183 PDHDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAAA---EVLKREGIWT 227
           P++   FT  V +         G   SKR A+  AA    + L      T
Sbjct: 197 PEYAQIFTAKVTLGDNPEIIGTGKGSSKRKAQLAAAEAGWKALDALKTRT 246


>gi|298381809|ref|ZP_06991408.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli FVEC1302]
 gi|298279251|gb|EFI20765.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli FVEC1302]
          Length = 215

 Score =  118 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 106/205 (51%), Gaps = 6/205 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L++ F    E
Sbjct: 1   LQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALYHRFPRVDE 57

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ARE +L   +R+     K       SI AD VE+LI  ++L
Sbjct: 58  GDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFL 117

Query: 129 DGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  I+            +   +  G  ++D KT LQE+   +    P Y V    G  HD
Sbjct: 118 DSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHD 177

Query: 187 PRFTVVVEISGL-APAQGMDCSKRA 210
             FT+  ++SGL  P  G   S+R 
Sbjct: 178 QEFTIHCQVSGLSEPVVGTGSSRRK 202


>gi|307610570|emb|CBX00158.1| hypothetical protein LPW_19031 [Legionella pneumophila 130b]
          Length = 206

 Score =  118 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 111/206 (53%), Gaps = 6/206 (2%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           + L++ALTH S      ++YER EFLGD IL  +I+  LFN F    EG+LS   + LV 
Sbjct: 2   AYLKQALTHCSAGS---DNYERFEFLGDSILSFVIANELFNRFPLHSEGQLSRLRSFLVK 58

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
            E  +++ARE+ L  ++ +     +      TSI AD +E+++AA+YLDGG+  A   + 
Sbjct: 59  GEMLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEAILAAIYLDGGMTAAKQIIL 118

Query: 141 KYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
             +  R          +DAKT+LQE+  A     PEY +T   G +H   F V   I G+
Sbjct: 119 MLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKVEGDEHAQIFHVTCTIEGV 178

Query: 199 -APAQGMDCSKRAAEQVAAAEVLKRE 223
              A G   ++R AEQ+AA  +L++ 
Sbjct: 179 SQVAYGTGPNRRKAEQLAAKAMLEQL 204


>gi|194676595|ref|XP_591998.4| PREDICTED: ribonuclease III, nuclear isoform 2 [Bos taurus]
 gi|297487776|ref|XP_002696436.1| PREDICTED: ribonuclease III, nuclear-like isoform 2 [Bos taurus]
 gi|296475748|gb|DAA17863.1| ribonuclease III, nuclear-like isoform 2 [Bos taurus]
          Length = 1330

 Score =  118 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E  IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1062 KLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1121

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 1122 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 1180

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1181 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1240

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1241 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1289



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 919  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 978

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 979  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1038

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1039 LHPLQLQEPNTDRQLIETSPV 1059



 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 835 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 865


>gi|50365047|ref|YP_053472.1| ribonuclease III, dsRNA-specific ribonuclease [Mesoplasma florum
           L1]
 gi|81391925|sp|Q6F1N5|RNC_MESFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|50363603|gb|AAT75588.1| ribonuclease III, dsRNA-specific ribonuclease [Mesoplasma florum
           L1]
          Length = 231

 Score =  118 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 106/227 (46%), Gaps = 6/227 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +      +  G    +  +   ALTH+S ++  +  E+Y+RLEFLGD +L + +S  L+ 
Sbjct: 1   MTMHEFFENFGIKINDSKIFSTALTHNSYANETKTKETYQRLEFLGDAVLQMYVSKFLYL 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +F +A EG+L+   + +V  ET S++A+ +DL   IR+     K       SI +DV E+
Sbjct: 61  NFTNAPEGKLTKTRSDIVRQETLSEIAKMIDLGKIIRLGQGEIKSKGYEKPSILSDVYEA 120

Query: 122 LIAALYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           + AA+YLD   E       + + KY ++   K       ++ +    A  +  +    + 
Sbjct: 121 VTAAIYLDQTEEVLISWIKSTIFKYIEKNDYKELNHDYKSELQEIIQAEIRSDLEYRVES 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                 D+   +TV V + G     G   SK+ A Q AA + L +  
Sbjct: 181 QKHIEKDNKIEYTVSVNLDGKKYGIGTGFSKQEASQNAAKDCLNKLK 227


>gi|54026155|ref|YP_120397.1| ribonuclease III [Nocardia farcinica IFM 10152]
 gi|81373706|sp|Q5YS08|RNC_NOCFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54017663|dbj|BAD59033.1| putative RNase III [Nocardia farcinica IFM 10152]
          Length = 240

 Score =  118 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 101/227 (44%), Gaps = 7/227 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
           +  +++L + +G       LL  ALTH S ++      + ERLEFLGD +LGL I+  L+
Sbjct: 11  SDDHASLLEALGVDVR-PDLLRLALTHRSYAYENGGLPTNERLEFLGDSVLGLSITERLY 69

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---RKDVCSFMTSIQAD 117
           +      EGEL+    S+V+    ++VAR L                        SI AD
Sbjct: 70  HEHPDKSEGELAKLRASVVNMHALAEVARGLGEGGLGAHLLLGKGEELTGGRDKPSILAD 129

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYK 176
            +ESL+ A++L  GI+VA   V + +     +  +           +   A+ G+     
Sbjct: 130 GMESLLGAVHLQHGIDVARGVVLRLFADLLERGPRMGAGLDWKTSLQELTAERGLGVPSY 189

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +GPDHD  FT    I G A  QG+  SK+ AEQ AA    +  
Sbjct: 190 EISSTGPDHDKEFTATTVIGGRAYGQGVGRSKKEAEQKAAGAAYQAL 236


>gi|332299505|ref|YP_004441426.1| Ribonuclease 3 [Porphyromonas asaccharolytica DSM 20707]
 gi|332176568|gb|AEE12258.1| Ribonuclease 3 [Porphyromonas asaccharolytica DSM 20707]
          Length = 259

 Score =  118 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLF 60
             +TL  RIG       L   A+ H S S       + + ERLEFLGD +L   I T L+
Sbjct: 27  NLTTLFDRIGIVPVRTDLYLLAMRHRSCSIVGEEGEKLNNERLEFLGDAVLEASICTYLY 86

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               +  EGELS   +SLVS    ++V R L L  +I +      +      +    ++ 
Sbjct: 87  QLHPTWDEGELSKCKSSLVSRPVNNEVGRRLHLERYIIMVPSALDNSVDIYGNTVEALIG 146

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++          E    F+   ++     +    ++ K+EL EW       + E+++   
Sbjct: 147 AIYLDQGYARTQEFVRDFILPTYRDMQAHTVASIQNYKSELIEWVQKHHL-SHEFRLEEH 205

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               HD  F   V I G    +G   SK+ A+Q AA + LK  
Sbjct: 206 EMAPHD-HFIYSVWIDGKPVGRGAGSSKKRAQQEAARDTLKLL 247


>gi|308177247|ref|YP_003916653.1| ribonuclease III [Arthrobacter arilaitensis Re117]
 gi|307744710|emb|CBT75682.1| ribonuclease III [Arthrobacter arilaitensis Re117]
          Length = 225

 Score =  118 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 92/212 (43%), Gaps = 4/212 (1%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            KR+G    +      A TH S S+ +    + ERLEFLGD ILG  ++  L+  F    
Sbjct: 1   MKRLGINI-DSETFRLAFTHRSYSYEHGGIPTNERLEFLGDSILGFCVAEYLYASFPDLP 59

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+L+ R  ++VS    + +AR+L++   + +     +   +  +SI AD +E+++ A Y
Sbjct: 60  EGDLAKRRAAIVSTRALAMIARDLEVGEHLFLGRGESQSNGANKSSILADTMEAILGATY 119

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV-TFRSGPDHD 186
           L  G++ A   V ++                 +             E       SGPDH 
Sbjct: 120 LVQGMDEARALVLRFVTPLLEDPRLLGATTDWKTVIQEEVASQKLGEMCYEVTGSGPDHA 179

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
             +   + I   +  +G   SK+ AEQ AA  
Sbjct: 180 RTYVAKLCIGAKSYGEGHGPSKKEAEQEAAHN 211


>gi|332284936|ref|YP_004416847.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7]
 gi|330428889|gb|AEC20223.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7]
          Length = 252

 Score =  118 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 113/228 (49%), Gaps = 10/228 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++    TL+  + Y F + SLLE+ALTH S S       ERLEFLGD +L  ++++LLF
Sbjct: 1   MASQN--TLQAALDYQFGDASLLEQALTHRSHS---GPHNERLEFLGDSVLNFVVASLLF 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+LS    +LV     + +A  L+L+ ++R+     K       SI AD +E
Sbjct: 56  VRFPKIDEGDLSRLRANLVKQAALADIAGRLNLSQYLRLGEGELKSGGFRRPSILADALE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           +L AA+YLDGG + A   + + ++            +D KT LQE   A+    P Y V 
Sbjct: 116 ALFAAVYLDGGFDAAQQVIQRQYETILDNVDAKTLGKDPKTLLQELLQARKLDLPAYTVV 175

Query: 179 FRSGPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              G  H+  F V  +I    +  + G   S+RAAEQ AA   +    
Sbjct: 176 ATHGAAHNQLFEVECQIPVLDIKVSAG-GASRRAAEQSAAELAIAAIN 222


>gi|313901966|ref|ZP_07835382.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965]
 gi|313467755|gb|EFR63253.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965]
          Length = 284

 Score =  118 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 107/222 (48%), Gaps = 7/222 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
              +    G A A      +ALTH+S    + +      ERLEFLGD +L L ++  +F 
Sbjct: 43  VEAVAALTGVAPARPEPFLEALTHASYRSEHPDTAGPDNERLEFLGDAVLNLCVTDYIFR 102

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EGELS    ++V AET +  A+ L L   +R+             S+ AD  E+
Sbjct: 103 TYPQRPEGELSKLRAAVVRAETLAATAQRLGLGELLRLGRGEEATGGRQRPSVLADAYEA 162

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           ++AA+YL  G+E A  F+ +       +  +      D KT LQE +       P Y+V 
Sbjct: 163 MVAAVYLQEGLEGARAFILRTLGDDIRRLAESSGACDDPKTALQELSRRLGLGEPTYRVV 222

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             +GP+HDPR+TV V + G   AQ +  SK+ AE+ AA   L
Sbjct: 223 GAAGPEHDPRYTVEVRVGGRPLAQAVGRSKKVAEREAARMAL 264


>gi|93005197|ref|YP_579634.1| ribonuclease III [Psychrobacter cryohalolentis K5]
 gi|92392875|gb|ABE74150.1| RNAse III [Psychrobacter cryohalolentis K5]
          Length = 265

 Score =  118 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 110/224 (49%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           R + L +++GY F + SL + ALTH S     +++YERLEFLGD +LG+++   L++ + 
Sbjct: 33  RLAVLTRKLGYVFNDLSLPKLALTHRSFDS--KKNYERLEFLGDALLGMIVGEALYHRYP 90

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG L+    +LV  E+   +A+ L+L++ + +    RK       SI AD VESLI 
Sbjct: 91  TQNEGRLTRMRATLVRQESLVIIAQNLELSNQLILGVGERKGGGRNRASILADAVESLIG 150

Query: 125 ALYLDGGIEVAGTFV---DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD                     +   K  +DAK+ LQEW  +K    P Y++    
Sbjct: 151 AIYLDSQDMNITRECVLSWYGDLIDNVNDQKALKDAKSRLQEWLQSKQFDLPHYELMETR 210

Query: 182 GPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G      F V  +++            S+R AEQ AA  ++ + 
Sbjct: 211 GNAPHQIFVVRCQVNILNCPDITESGESRRIAEQKAAELMINQL 254


>gi|114327656|ref|YP_744813.1| ribonuclease III [Granulibacter bethesdensis CGDNIH1]
 gi|114315830|gb|ABI61890.1| ribonuclease III [Granulibacter bethesdensis CGDNIH1]
          Length = 258

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 81/229 (35%), Positives = 117/229 (51%), Gaps = 12/229 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH-----------SYQESYERLEFLGDRILGLL 54
               E  + + FA R LL +ALTH S                  S ERLEF+GDR+LGL+
Sbjct: 19  LEAAEALLSHRFARRDLLAEALTHRSAVKIMHGQTGQSLPRGAGSNERLEFVGDRVLGLV 78

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           ++  L   F   +EGEL  R   LVS    + +A +  L   + V+    K     + ++
Sbjct: 79  VAEWLVERFPLEQEGELGRRLAHLVSQPVLAGIAEQSGLPQILSVAPGEAKAGVRKLATV 138

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
            +D +E+LI ALYLD G++    F+ ++W+    +  +  +DAKT LQEWA       P 
Sbjct: 139 LSDAMEALIGALYLDAGLDPVRQFIRRHWEPVMQRQTEPPKDAKTALQEWAQGLGLHLPT 198

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y++  R GP H+P F V V +      QG   SKRAAEQ+AA ++L R 
Sbjct: 199 YRLARREGPPHNPVFWVEVLVGDHV-GQGQAGSKRAAEQLAAQDLLGRI 246


>gi|224045068|ref|XP_002199233.1| PREDICTED: ribonuclease III, nuclear [Taeniopygia guttata]
          Length = 1338

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1070 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1129

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F   +   ++ V        AD++ES 
Sbjct: 1130 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAITNDKTKRPVTLRT-KTLADLLESF 1188

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1189 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1248

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1249 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1297



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F + +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 927  NHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELERFM 986

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 987  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNEKDLRDVWLNYP 1046

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1047 LHPLQLQESNTDRQLIETSPV 1067



 Score = 43.4 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 843 LDKLIGYTFRDRCLLQLAMTHPSHHLNFGMN 873


>gi|115314441|ref|YP_763164.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
 gi|122325533|sp|Q0BN07|RNC_FRATO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|115129340|gb|ABI82527.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
          Length = 230

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 9/222 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS     +GY F + +LL +ALTH S     +++YERLEFLGD +L  +I+ +L+  F  
Sbjct: 5   YSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFTD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T +Q+A  L +  +I       +        I  DV E++I A
Sbjct: 62  LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYII--LGASEQGGHKREKILEDVFEAVIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD         + K+++             +D+K++LQE         PEY +    G
Sbjct: 120 IYLDSDFATVKKVILKWYQPIISSINLDTIKFKDSKSKLQEILLQNALSLPEYSIETIDG 179

Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
            DH+ +FTVV     L    +    S++ AEQ  A ++++  
Sbjct: 180 KDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIEML 221


>gi|312069951|ref|XP_003137921.1| RNase3 domain-containing protein [Loa loa]
 gi|307766916|gb|EFO26150.1| RNase3 domain-containing protein [Loa loa]
          Length = 1297

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             + LEK IG  F +  +L KA T  +   ++      +RLEFLGD +L L+ +  L+ HF
Sbjct: 987  LTELEKSIGVTFKHIRVLAKAFTRRNIGFNNLTLGHNQRLEFLGDTVLQLITTDYLYKHF 1046

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-MTSIQADVVESL 122
                EG LS+    LVS  T S +  ++ +  ++     ++K          +AD+VE+ 
Sbjct: 1047 PYHHEGHLSILRTCLVSNRTQSVICDDIGMTKYLVTPKVMQKSGLPILRVKDKADLVEAF 1106

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV------TPE 174
            + ALY+D G +    F    +  R       +   D K++LQ+       +       PE
Sbjct: 1107 LGALYVDRGFDYCKVFCRICFFPRLKFFIIAQHWNDPKSQLQQCCLTLRQMDGGEPDIPE 1166

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            Y+     GP +   + V V       A G   + + A+  AA   L +
Sbjct: 1167 YRTIAVEGPTNTRIYKVAVYFRKKRLAVGCGHTMQLAQMRAAENALIK 1214



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%)

Query: 30  SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
                S     ERLEFLGD ++  + +  LF  F    EG L+   +++V  +  + +A+
Sbjct: 834 KKAEQSPLNHNERLEFLGDAVIEFITTIHLFYMFSELDEGGLATYRSTMVQNKNLAVLAK 893

Query: 90  ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           ++ L  F+  +        S +    A+  E+++AA+YLD GI+           
Sbjct: 894 KIGLDEFMLYAHGPDLCHESDLRHAMANAFEAMMAAIYLDAGIDECDRIFGHAMF 948



 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQES 39
           ++RI Y F NRSLLE ALTH S   +Y  +
Sbjct: 756 QERIHYVFKNRSLLELALTHPSYRTNYGTN 785


>gi|87118656|ref|ZP_01074555.1| ribonuclease III [Marinomonas sp. MED121]
 gi|86166290|gb|EAQ67556.1| ribonuclease III [Marinomonas sp. MED121]
          Length = 217

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 83/213 (38%), Positives = 115/213 (53%), Gaps = 6/213 (2%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           GY FA+  LLE ALTH S      ++ ERLEFLGD IL  +I+  LF+ F  AKEGELS 
Sbjct: 2   GYFFADLGLLELALTHRSFG---GKNNERLEFLGDSILNYVIAEDLFHRFPKAKEGELSR 58

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              SLV  ET +++ARE  L  ++++ +   K       SI  D VE +I A++LD G++
Sbjct: 59  LRASLVKGETLAEIAREFKLGDYLKLGAGELKSGGFRRDSILEDAVEGIIGAIFLDAGMD 118

Query: 134 VAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
                +  +++ R   +      +DAKT LQE+  A+    P+Y+VT   G  HD  F V
Sbjct: 119 TCSERILSWYESRLNATSLKIVTKDAKTRLQEFLQARKHALPQYEVTEVLGEPHDQTFYV 178

Query: 192 VVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223
              I   A P +G   S+R AEQ AA + L   
Sbjct: 179 HCVIELFADPIEGKGNSRRIAEQKAATQALAML 211


>gi|269794452|ref|YP_003313907.1| RNAse III [Sanguibacter keddieii DSM 10542]
 gi|269096637|gb|ACZ21073.1| RNAse III [Sanguibacter keddieii DSM 10542]
          Length = 234

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/218 (31%), Positives = 97/218 (44%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L + +G    +  LL  +LTH S +H      + ERLEFLGD +LGL+ +  LF      
Sbjct: 15  LLEELGVHL-DPELLVLSLTHRSFAHEAGGIPTNERLEFLGDAVLGLVAAEALFRRHPDR 73

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    + VS    + VAR L L  +I +     +       SI +D VESLI A+
Sbjct: 74  PEGDLAKMRAASVSQRALAAVARRLSLGDYILLGKGESQTRGFDKDSILSDTVESLIGAV 133

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YL  G+E A +FV +        +             + A A+  V      +   GPDH
Sbjct: 134 YLSHGLEEARSFVHRLLDSTLDAAADLGAGLDWKTSLQEAAAERNVGAPEYTSEGEGPDH 193

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              FT  V I G     G   +K+ AEQ+AA +     
Sbjct: 194 ARIFTAHVIIDGEILGTGQGTAKKHAEQIAAEQAYVAL 231


>gi|78356751|ref|YP_388200.1| ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|90101625|sp|Q310Z1|RNC_DESDG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78219156|gb|ABB38505.1| RNAse III [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 229

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 114/223 (51%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62
           +  L+  + Y FA+  LLE ALTHSS ++      E  ERLE+LGD +L L +S  LF  
Sbjct: 2   FEKLQDVLCYRFADVRLLETALTHSSYANERGTEIEHNERLEYLGDAVLELTVSEQLFTR 61

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+L+     LVS  + +++AREL L +++ +            +S+ +D  E++
Sbjct: 62  FPEAREGQLTRMRARLVSKPSLAELARELKLDTYLLLGKGEESQGGRTRSSVLSDAFEAI 121

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A++LDGG   AG  V   +  R  +  +    +DAK+ LQE     F   P Y +   
Sbjct: 122 LGAIFLDGGYAAAGKTVLHVFSSRWPQGAEAARTKDAKSTLQELTQRLFKERPVYTLLGS 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP+H+  F V + +      +    S + AEQ AA   L+  
Sbjct: 182 SGPEHEKIFKVRLLLPDGRALETEGQSVKRAEQKAAGLALELL 224


>gi|189345713|ref|YP_001942242.1| Ribonuclease III [Chlorobium limicola DSM 245]
 gi|189339860|gb|ACD89263.1| Ribonuclease III [Chlorobium limicola DSM 245]
          Length = 273

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 104/212 (49%), Gaps = 6/212 (2%)

Query: 18  ANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
              +L   ALTH S++H       ES +RLEFLGD +L ++IS  L+  F ++ EG+LS 
Sbjct: 51  NEPALYLTALTHRSVTHDASVPGTESNQRLEFLGDAVLDMVISEYLYRSFPNSAEGDLSS 110

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
               +V+ ++ +  A+ + L +++ +      +      S  AD  ESL  A+YLD G++
Sbjct: 111 NRAKIVNRKSLAGFAQTMGLGNYLIIGESADCNKIRTSESALADAFESLTGAIYLDKGLD 170

Query: 134 VAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
               FV K   +            + K+ L E+  +     P Y V  + G +H+  FT+
Sbjct: 171 AVRAFVMKQVIEHVDFKTIVASEHNYKSRLIEYTQSHHIPPPVYTVIAQDGAEHEKVFTI 230

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            V  +G +  +G    K+ AEQ+AA E ++  
Sbjct: 231 EVSCAGCSCGRGSAPRKKDAEQLAAKEAVEML 262


>gi|21674928|ref|NP_662993.1| ribonuclease III [Chlorobium tepidum TLS]
 gi|28201878|sp|Q8KAN7|RNC_CHLTE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|21648156|gb|AAM73335.1| ribonuclease III [Chlorobium tepidum TLS]
          Length = 272

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 103/213 (48%), Gaps = 8/213 (3%)

Query: 19  NRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           NR +   ALTH S+ H +       ES +RLEFLGD +L LLIS  LF  F  + EG LS
Sbjct: 44  NRLIYRTALTHRSVLHDHHSEEHKPESNQRLEFLGDAVLDLLISEHLFKQFPGSDEGHLS 103

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                +V+ ++ +  A EL L   + +     K       S  AD +E+L+ A+YLD G+
Sbjct: 104 SNRAKIVNRKSLAAFALELQLGEHLIIGESADKQKIRTSESALADALEALVGAIYLDQGL 163

Query: 133 EVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
             A  F+  +   +       +   + K+ L E+  ++    P Y V    G +H+  F 
Sbjct: 164 AGAERFITNHVIAKVDLHKLVEAEYNYKSRLIEYTQSRQLPPPLYTVITEEGAEHEKTFV 223

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V V  +G    +G    K+ AEQ+AA E +KR 
Sbjct: 224 VEVSCNGQPLGRGTAPRKKDAEQLAAKEAMKRL 256


>gi|327284145|ref|XP_003226799.1| PREDICTED: ribonuclease 3-like [Anolis carolinensis]
          Length = 1323

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E  IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1055 KLTMFEDAIGVTFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1114

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F   +   ++ V        AD++ES 
Sbjct: 1115 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAITNDKTKRPVALRT-KTLADLLESF 1173

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1174 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1233

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1234 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMCAAMDALEKYN 1282



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 927  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 986

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              +        S +    A+  E+LI A+YL+G +E
Sbjct: 987  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLE 1022



 Score = 43.0 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 843 LDKLIGYIFKDRCLLQLAMTHPSHHLNFGMN 873


>gi|94263438|ref|ZP_01287251.1| Ribonuclease III [delta proteobacterium MLMS-1]
 gi|93456168|gb|EAT06307.1| Ribonuclease III [delta proteobacterium MLMS-1]
          Length = 233

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 70/215 (32%), Positives = 96/215 (44%), Gaps = 7/215 (3%)

Query: 2   SALRYSTLEKRI---GYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLI 55
            +     L  R+   GY F   SLLE AL HSS +    +   S ERLEFLGD +LGL +
Sbjct: 1   MSKNSDPLAARLAAMGYRFKRTSLLELALVHSSRAAEAGKGVSSNERLEFLGDAVLGLAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           + LL+    +  EG+LS    +LV+ E  + +AR+L L  FIR+             SI 
Sbjct: 61  AALLYEAHPTMPEGDLSRHRAALVNEEHLAGMARQLALGEFIRLGRGEEATGGRDKPSIL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           A   E+L+ A+YLDGG E A   +   +          R        +    +       
Sbjct: 121 AATFEALVGAVYLDGGYEPALALLRPLFAPWVANPPLPRISDSKSALQEVLQQRHGEGPV 180

Query: 176 KVTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                  GPDHD RFTV VE+ G    +G    K+
Sbjct: 181 YYLENEEGPDHDKRFTVRVELQGKVLGRGRGRGKK 215


>gi|119631174|gb|EAX10769.1| ribonuclease III, nuclear, isoform CRA_b [Homo sapiens]
          Length = 1120

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 852  KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 911

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 912  FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 970

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 971  IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1030

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1031 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1079



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 709 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 768

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
             +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 769 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 828

Query: 158 KTELQEWAHAKFGVTPEYKVT 178
              LQ           E    
Sbjct: 829 LHPLQLQEPNTDRQLIETSPV 849



 Score = 43.0 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 625 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 655


>gi|34784428|gb|AAH57687.1| Rnasen protein [Mus musculus]
          Length = 942

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 674 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 733

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 734 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 792

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 793 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 852

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 853 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 901



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 531 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 590

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
             +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 591 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 650

Query: 158 KTELQEWAHAKFGVTPEYKVT 178
              LQ           E    
Sbjct: 651 LHPLQLQEPNTDRQLIETSPV 671



 Score = 43.0 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 447 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 477


>gi|29123082|gb|AAO65849.1| ribonuclease III [Mus musculus]
          Length = 1021

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 753 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 812

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 813 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAVTNDKTKRPVALRT-KTLADLLESF 871

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 872 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 931

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 932 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 980



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 610 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 669

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
             +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 670 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPGLREVWLNYP 729

Query: 158 KTELQEWAHAKFGVTPEYKVT 178
              LQ           E    
Sbjct: 730 LHPLQLQEPNTDRQLIETSPV 750



 Score = 43.0 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 526 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 556


>gi|171780118|ref|ZP_02921022.1| hypothetical protein STRINF_01906 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281466|gb|EDT46901.1| hypothetical protein STRINF_01906 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 228

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 12/231 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M AL  + L++  G AF +++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MQALD-TKLQRDFGIAFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSL---VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
             LF  +    E             V  E+ +  +R      FI++ +   K       +
Sbjct: 60  QYLFKKYPKKPE---GDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDT 116

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVT 172
           I  D+ E+ + AL +D G+E    F+++    +  K + +  +D KT LQE       VT
Sbjct: 117 ILGDLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELLQGHSDVT 176

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +Y+V+  SGP H   F V V ++  A ++G+  SK+ AEQ AA   L   
Sbjct: 177 IDYRVSSESGPAHAKVFEVTVYVNDEAKSKGIGKSKKLAEQDAAKNALATL 227


>gi|85716284|ref|ZP_01047258.1| ribonuclease III [Nitrobacter sp. Nb-311A]
 gi|85696956|gb|EAQ34840.1| ribonuclease III [Nitrobacter sp. Nb-311A]
          Length = 266

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 122/202 (60%), Gaps = 3/202 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + +E+R+G+ FA+ SLL  A TH S    S    +SY+RLEFLGD +LGL+IS +L+  F
Sbjct: 44  AAIEQRLGHKFADISLLTTAFTHVSALKSSRGRSDSYQRLEFLGDHVLGLVISDMLYRAF 103

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS R   LV  ETC  VAR LDL   +++ +           S+  D+ E++I
Sbjct: 104 PQADEGELSKRLADLVRKETCIDVARSLDLQEGVKLGAVGAGAGARLRRSVLGDICEAVI 163

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG  VA  FV++ W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP
Sbjct: 164 GAVYLDGGYAVAAAFVERNWLERMRKPVRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 223

Query: 184 DHDPRFTVVVEISGLAPAQGMD 205
            HDPRF V VE+ GL  ++G+ 
Sbjct: 224 HHDPRFRVAVELPGLEVSEGIG 245


>gi|325000484|ref|ZP_08121596.1| RNAse III [Pseudonocardia sp. P1]
          Length = 249

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 87/216 (40%), Gaps = 11/216 (5%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL  ALTH S ++ +    + ERLEFLGD +L ++I+  L+       EG+L+    
Sbjct: 25  DEELLTLALTHRSYAYEHGGLPTNERLEFLGDSVLSIVITERLYRDHPDLPEGQLAKLRA 84

Query: 77  SLVSAETCSQVAREL--------DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           S+V+    + VA  L         L +++ +             SI AD  E+L+ A+YL
Sbjct: 85  SVVNMHALAGVAVALPTPGESSDGLGAYLYLGRGEELTGGRSKASILADATEALLGAVYL 144

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
             G+E +   V + +      +             +   A  G           GPDH  
Sbjct: 145 QHGLEPSRELVHRLFADLLHSAPLLGAGLDWKTSLQELTAAGGHGVPEYRIDEEGPDHLK 204

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            FT    + G     G   +K+ AEQ AA    +  
Sbjct: 205 VFTATAVVGGRDLGSGAGRTKKEAEQKAAELAWRTL 240


>gi|157326505|gb|ABV44384.1| ASL1/DROSHA fusion [Mus musculus]
          Length = 756

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 488 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 547

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 548 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 606

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 607 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 666

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 667 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 715



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 345 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 404

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
             +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 405 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 464

Query: 158 KTELQEWAHAKFGVTPEYKVT 178
              LQ           E    
Sbjct: 465 LHPLQLQEPNTDRQLIETSPV 485



 Score = 43.0 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 261 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 291


>gi|73953916|ref|XP_868245.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
           isoform 6 [Canis familiaris]
          Length = 635

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 367 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 426

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 427 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 485

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 486 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 545

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 546 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 594



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 224 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 283

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
             +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 284 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 343

Query: 158 KTELQEWAHAKFGVTPEYKVT 178
              LQ           E    
Sbjct: 344 LHPLQLQEPNTDRQLIETSPV 364



 Score = 43.0 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 140 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 170


>gi|295086176|emb|CBK67699.1| RNAse III [Bacteroides xylanisolvens XB1A]
          Length = 355

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 5/225 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57
           +   Y    + +G+   N  L E+AL H S S         + ERLEFLGD IL  ++  
Sbjct: 29  NRESYLCFYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGD 88

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +++  F+  +EG L+   + +V  ET +++A E+ L   I+ S+           +    
Sbjct: 89  IVYKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHNSYMYGNAFEA 148

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            + ++      +   +     +   +      S K     K++L EW+           +
Sbjct: 149 FIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNF-KSKLIEWSQKNKMEVSFELI 207

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                 D +P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 208 EQFLDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252


>gi|89255958|ref|YP_513320.1| ribonuclease III [Francisella tularensis subsp. holarctica LVS]
 gi|187931188|ref|YP_001891172.1| ribonuclease III [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|254367315|ref|ZP_04983341.1| ribonuclease III [Francisella tularensis subsp. holarctica 257]
 gi|254368791|ref|ZP_04984804.1| hypothetical protein FTAG_00596 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|122501056|sp|Q2A4N2|RNC_FRATH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238691551|sp|B2SFY4|RNC_FRATM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|89143789|emb|CAJ78994.1| Ribonuclease III [Francisella tularensis subsp. holarctica LVS]
 gi|134253131|gb|EBA52225.1| ribonuclease III [Francisella tularensis subsp. holarctica 257]
 gi|157121712|gb|EDO65882.1| hypothetical protein FTAG_00596 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187712097|gb|ACD30394.1| ribonuclease III [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 230

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 9/222 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS     +GY F + +LL +ALTH S     +++YERLEFLGD +L  +I+ +L+  F  
Sbjct: 5   YSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFTD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T +Q+A  L +  +I       +        I  DV E++I A
Sbjct: 62  LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYII--LGASEQGGHKREKILEDVFEAVIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD         + K+++             +D+K++LQE         PEY +    G
Sbjct: 120 IYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETIDG 179

Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
            DH+ +FTVV     L    +    S++ AEQ  A ++++  
Sbjct: 180 KDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIEML 221


>gi|27552890|gb|AAH41162.1| RNASEN protein [Homo sapiens]
          Length = 722

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 454 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 513

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 514 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 572

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 573 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 632

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 633 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 681



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 311 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 370

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
             +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 371 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 430

Query: 158 KTELQEWAHAKFGVTPEYKVT 178
              LQ           E    
Sbjct: 431 LHPLQLQEPNTDRQLIETSPV 451



 Score = 43.0 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 227 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 257


>gi|226940389|ref|YP_002795463.1| ribonuclease III [Laribacter hongkongensis HLHK9]
 gi|226715316|gb|ACO74454.1| Rnc [Laribacter hongkongensis HLHK9]
          Length = 238

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 6/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L + IG+ F + +LL++ALTH S       + ER EF+GD IL   I+ +LF+ F  
Sbjct: 7   IDRLMQHIGHLFTSPALLKEALTHRSYGQ---PNNERFEFVGDGILNYTIARMLFDAFPE 63

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    +LV+  T +++AREL L   + +    RK       SI AD +E++ AA
Sbjct: 64  LSEGQLSRLRANLVNQATLAEIARELTLGDCLFLGDGERKSGGHDRPSILADAMEAIFAA 123

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           + LD    VA   V + +  R   +   +  +DAKT LQE   A+    P Y++  +SG 
Sbjct: 124 VCLDADFAVAENVVRRLYAARVAGIDLNRQAKDAKTRLQEMLQARRLPLPAYRILNQSGD 183

Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
            H  +F V  +I  L  A  G   S+RAAEQ+AA   ++  
Sbjct: 184 AHLSQFEVACDIPQLGLATCGEGSSRRAAEQLAAERAIEAI 224


>gi|220934266|ref|YP_002513165.1| Ribonuclease III [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995576|gb|ACL72178.1| Ribonuclease III [Thioalkalivibrio sp. HL-EbGR7]
          Length = 228

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 106/227 (46%), Gaps = 13/227 (5%)

Query: 1   MSALRYSTL--EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           MS +    L  E        +  LL +ALTH S       + ERLE+LGD +LG++++  
Sbjct: 1   MSRIPLHDLLPEGL-----HDSELLTEALTHRSAGS---PNNERLEYLGDAVLGMVMAEH 52

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF     A EG+LS    +LV+ ++ + + +   L   I +     K   +   SI AD 
Sbjct: 53  LFKAHPEASEGDLSRLRATLVNKDSLAVIGKAQGLGGHINLGQGELKSGGARRNSILADA 112

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYK 176
           VE++I A+YLD G + A  FV   +  R          +D KT LQEW   +    P Y+
Sbjct: 113 VEAVIGAVYLDSGFDAARRFVLALYADRLESLPALDALKDPKTRLQEWLQGRSRELPVYE 172

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           VT  +G  H+ RF  +  +       G   S+R AEQ AA   LK  
Sbjct: 173 VTSVTGKAHEQRFRALCRVGDQEYP-GEGTSRRRAEQAAAECALKAL 218


>gi|309789990|ref|ZP_07684566.1| ribonuclease III [Oscillochloris trichoides DG6]
 gi|308228010|gb|EFO81662.1| ribonuclease III [Oscillochloris trichoides DG6]
          Length = 235

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 113/233 (48%), Gaps = 24/233 (10%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY------QESYERLEFLGDRILGLLISTLLF 60
             L++++G  F +  L  +A  H S  H +      +ES ERLEFLGD +L  L +  L+
Sbjct: 2   DELQRQLGIRFNDEELFTRAFVHRSFIHEHPERNRPRESNERLEFLGDAVLNFLSAAWLY 61

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +F    EGEL+    +LV   T +  AR LDL   I++S      +     ++ ADV E
Sbjct: 62  ANFPDRTEGELTHLRAALVKTNTLAGFARSLDLGRHIKISRGEDTPIARNRPALLADVFE 121

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L+ A+YLD G++   TF+  +++ + +    G    D +T LQE A ++F  TP Y++ 
Sbjct: 122 ALLGAIYLDQGLDAVRTFITPFFEHQIVVVLSGSDEVDYRTRLQEQAQSRFNRTPTYRMV 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSK--------RAAEQVAAAEVLKRE 223
             SGPDH   FT+ V I  +    G+  SK        R          L R 
Sbjct: 182 DVSGPDHQREFTMEVVIDEVRYGVGVGTSKQAAAQAAARE--------ALNRL 226


>gi|29748104|gb|AAH50057.1| Rnasen protein [Mus musculus]
          Length = 705

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 10/229 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 437 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 496

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    E  L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 497 FPDHHERHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 555

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 556 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 615

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 616 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 664



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 294 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 353

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
             +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 354 LYAHGPDLCSESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 413

Query: 158 KTELQEWAHAKFGVTPEYKVT 178
              LQ           E    
Sbjct: 414 LHPLQLQEPNTDRQLIETSPV 434



 Score = 42.6 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 210 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 240


>gi|239906016|ref|YP_002952755.1| ribonuclease III [Desulfovibrio magneticus RS-1]
 gi|239795880|dbj|BAH74869.1| ribonuclease III [Desulfovibrio magneticus RS-1]
          Length = 243

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 72/217 (33%), Positives = 111/217 (51%), Gaps = 5/217 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           +G+ FA  +LL  ALTHSS ++   E     ERLEFLGD +L L +S  LF+ F  A EG
Sbjct: 22  LGHEFATPALLATALTHSSCANERGEGTRHNERLEFLGDAVLELCVSEELFSLFPEAPEG 81

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           EL++  + LV+  + + +A  L LA  +R+             S+ +DV E+++ A++LD
Sbjct: 82  ELTLLRSQLVNEASLAAMALRLGLAGHVRLGRGEENQGGRSRPSLLSDVFEAVVGAIFLD 141

Query: 130 GGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG   A  FV + +  +  +       +D K+ LQE+        P Y +   +GP+HD 
Sbjct: 142 GGYTAARAFVSRTFDGQWPERPAAPKIKDFKSRLQEFTQRTHKARPVYALLGSAGPEHDK 201

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           RF V + +        ++ S + AEQ AA   L   G
Sbjct: 202 RFEVRLTLPCGREILAVEKSVKKAEQQAARLALTVLG 238


>gi|156501954|ref|YP_001428019.1| ribonuclease III [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|290954597|ref|ZP_06559218.1| ribonuclease III [Francisella tularensis subsp. holarctica URFT1]
 gi|295311940|ref|ZP_06802764.1| ribonuclease III [Francisella tularensis subsp. holarctica URFT1]
 gi|189043315|sp|A7NAR0|RNC_FRATF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|156252557|gb|ABU61063.1| ribonuclease III [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 230

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 9/222 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS     +GY F + +LL +ALTH S     +++YERLEFLGD +L  +I+ +L+  F  
Sbjct: 5   YSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFTD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T +Q+A  L +  +I       +   +    I  DV E++I A
Sbjct: 62  LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYII--LGASEQGGNKREKILEDVFEAVIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD         + K+++             +D+K++LQE         PEY +    G
Sbjct: 120 IYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETIDG 179

Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
            DH+ +FTVV     L    +    S++ AEQ  A ++++  
Sbjct: 180 KDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIEML 221


>gi|110678686|ref|YP_681693.1| ribonuclease III [Roseobacter denitrificans OCh 114]
 gi|123362135|sp|Q16AI6|RNC_ROSDO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|109454802|gb|ABG31007.1| ribonuclease III [Roseobacter denitrificans OCh 114]
          Length = 228

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 80/210 (38%), Positives = 122/210 (58%), Gaps = 1/210 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +    + +KR+G+ F   +LL +A+TH+S+S + +   +R+EFLGDR+LGL+++  L
Sbjct: 1   MKLSAELKSFQKRLGHQFNQPALLAQAVTHASMSTANRGDNQRMEFLGDRVLGLVMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
               ++A EG+L+ RFN+LV  ETC+ VARE+DL + +R+             ++  D +
Sbjct: 61  LRLDNNATEGQLAPRFNALVRKETCADVAREIDLGAVLRLGRSEMLSGGRRKQALLGDAI 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+Y D G + A   + + W  R  +  +  RD KT LQEWA A+    P Y+   
Sbjct: 121 EAVIAAVYQDAGFDAARALILRLWGDRVHEVEEDARDPKTALQEWAQARGLQPPRYEEVS 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           R GPDH P FT+ V IS     Q    SKR
Sbjct: 181 RKGPDHAPIFTISVRISTGETDQATAGSKR 210


>gi|134301463|ref|YP_001121431.1| ribonuclease III [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|189043317|sp|A4IWK9|RNC_FRATW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|134049240|gb|ABO46311.1| ribonuclease III [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 230

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 9/222 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS     +GY F + +LL +ALTH S     +++YERLEFLGD +L  +I+ +L+  F  
Sbjct: 5   YSRFYNILGYNFKDCTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFTD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T +Q+A  L +  +I       +        I  DV E++I A
Sbjct: 62  LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYII--LGASEQGGHKREKILEDVFEAVIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD         + K+++             +D+K++LQE         PEY +    G
Sbjct: 120 IYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETIDG 179

Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
            DH+ +FTVV     L    +    S++ AEQ  A ++++  
Sbjct: 180 KDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIEML 221


>gi|325265700|ref|ZP_08132389.1| ribonuclease III [Kingella denitrificans ATCC 33394]
 gi|324982831|gb|EGC18454.1| ribonuclease III [Kingella denitrificans ATCC 33394]
          Length = 242

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 10/227 (4%)

Query: 1   MSALR----YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56
           M+  +       L++R+GY F    LL++ALTH S       + ERLEF+GD I+  +++
Sbjct: 1   MNKSQKHTARQQLQQRLGYTFRQPELLQQALTHRSAGK---NNNERLEFVGDGIVNFVVA 57

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +L++ F    EG LSV    LV     +++AREL + + + +     K       SI A
Sbjct: 58  QMLYHAFPDLPEGRLSVLRTHLVKEAALAEMARELGVGAALTLGVGELKSGGHDRPSILA 117

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D +E+L AA+ LD  +      + + + QR     + +   D KT LQE   A     P+
Sbjct: 118 DALEALFAAIRLDADLPTVERIIQQLFSQRIAHIDQHQPAKDNKTRLQEALQACRLPLPK 177

Query: 175 YKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220
           Y++  ++G     +F V  ++  L         S+R AEQ  A + L
Sbjct: 178 YRIEKQTGEGEHAQFDVSCDLGELGKITYAHAHSRREAEQECARQAL 224


>gi|189241708|ref|XP_967454.2| PREDICTED: similar to ribonuclease iii [Tribolium castaneum]
          Length = 1180

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 100/229 (43%), Gaps = 16/229 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E+ +G  F +  LL +A T  S   ++    S +RLEFLGD +L L+ S  L+ +
Sbjct: 867  NLTKFEESVGLQFNHIRLLARAFTDRSVGYTNLTLGSNQRLEFLGDTVLQLIASEYLYKY 926

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L ++++               T  +AD++E+ 
Sbjct: 927  FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMSNYAVY----NNPKAELKTKDRADLLEAF 982

Query: 123  IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA--------HAKFGVT 172
            I ALY+D G+E    F         +     +   D K++LQ+                 
Sbjct: 983  IGALYVDQGLEFCEVFCQVTLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1042

Query: 173  PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +  V F +   +   +TV V   G   A  M  S + AE  AA + L+
Sbjct: 1043 YKSVVCFTNSEVNTRVYTVAVYFRGRRLASAMGHSIQQAEMNAAKKALE 1091



 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
            + LE+ + Y F NR+LL+ ALTH S   ++  +
Sbjct: 636 LNILEESVNYKFKNRALLQLALTHPSYRENFGTN 669



 Score = 44.9 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 48/98 (48%)

Query: 33  SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD 92
           + S     ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A+ L 
Sbjct: 718 TESNITHNERLEFLGDAVVEFLSSIHLFYTFPDLEEGGLATYRAAIVQNQHLAVLAKTLK 777

Query: 93  LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L  F+  +          +    A+  E+L+ AL+LDG
Sbjct: 778 LDQFMLYAHGSDLCHDLELRHAMANCFEALMGALFLDG 815


>gi|302525051|ref|ZP_07277393.1| ribonuclease III [Streptomyces sp. AA4]
 gi|302433946|gb|EFL05762.1| ribonuclease III [Streptomyces sp. AA4]
          Length = 246

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           ++L + +G    +  LL  +LTH S ++ +      ERLEFLGD +LGL+++  L+    
Sbjct: 14  ASLLEALGVEL-DPELLRLSLTHRSYAYEHGGLPPNERLEFLGDAVLGLVVTDHLYTTHP 72

Query: 65  SAKEGELSVRFNSLVSAET---CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              EG+L+    S+V+       ++   E  L + + +             SI AD +E+
Sbjct: 73  DLPEGQLAKLRASVVNMHALAGVARGLGEGGLGAHLLLGKGEELTGGRDKASILADGLEA 132

Query: 122 LIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +I A YL  GIEVA   V   +    A    +          +   A  G+         
Sbjct: 133 VIGATYLAHGIEVARKLVHHLFDGLLAEAPLRGAGLDWKTSLQELTASGGLGVPEYRVED 192

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGPDH   FT  V ++G A  +G   +K+ AEQ AA    +  
Sbjct: 193 SGPDHRKEFTATVLVAGRALGEGNGTTKKEAEQKAAETAWRAL 235


>gi|118580198|ref|YP_901448.1| ribonuclease III [Pelobacter propionicus DSM 2379]
 gi|118502908|gb|ABK99390.1| RNAse III [Pelobacter propionicus DSM 2379]
          Length = 234

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 4/213 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLL 59
            A   + LE+ I Y F +++ L +ALTH S  H      +Y+RLEFLGD +LG++++ +L
Sbjct: 1   MASDLAELEREIAYRFIDQAPLLQALTHPSFEHEQAGGGNYQRLEFLGDAVLGMVLAEML 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F  + EG LS   + +   +T + +AR   L  F+R+     +       SI ADV+
Sbjct: 61  FRRFPDSNEGVLSRLRSQIADQDTLAGIARSFGLGRFVRLGRGEEQGAGRNKDSILADVL 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+LIAA+YLDGG++ +   + + +     +  +     DAK+ELQE   A+   +P Y++
Sbjct: 121 EALIAAVYLDGGLKESRRLIQRLFVAILESRGARLRFNDAKSELQELLSARRLPSPVYRL 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
           T  SGP HD  F   V +      +G   SK+ 
Sbjct: 181 TGESGPPHDRLFIFQVLVDDAVVGEGEGRSKKI 213


>gi|62258114|gb|AAX77768.1| unknown protein [synthetic construct]
          Length = 265

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 11/229 (4%)

Query: 1   MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           M  +   YS     +GY F + +LL +ALTH S     +++YERLEFLGD +L  +I+ +
Sbjct: 24  MLEMVPEYSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEV 80

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  F    EG+LS   + LV   T +Q+A  L +  +I       +        I  DV
Sbjct: 81  LYKQFIDLAEGKLSQLRSKLVKGATLAQLASSLKMDEYII--LGASEQGGHKREKILEDV 138

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEY 175
            E++I A+YLD         + K+++             +D+K++LQE         PEY
Sbjct: 139 FEAVIGAIYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEY 198

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
            +    G DH+ +FTVV     L    +    S++ AEQ  A ++++  
Sbjct: 199 SIETIDGKDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIEML 247


>gi|7022183|dbj|BAA91511.1| unnamed protein product [Homo sapiens]
          Length = 769

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 501 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 560

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 561 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 619

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 620 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 679

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 680 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 728



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 358 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 417

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
             +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 418 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 477

Query: 158 KTELQEWAHAKFGVTPEYKVT 178
              LQ           E    
Sbjct: 478 LHPLQLQEPNTDRQLIETSPV 498



 Score = 42.6 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 274 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 304


>gi|57530438|ref|NP_001006379.1| ribonuclease 3 [Gallus gallus]
 gi|53134951|emb|CAG32380.1| hypothetical protein RCJMB04_24a21 [Gallus gallus]
          Length = 1336

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1068 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1127

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F   +   ++ V        AD++ES 
Sbjct: 1128 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAITNDKTKRPVALRT-KTLADLLESF 1186

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1187 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1246

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1247 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1295



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F + +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 925  NHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 984

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 985  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDKDLRDVWLNYP 1044

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1045 LHPLQLQESNTDRQLIETSPV 1065



 Score = 43.0 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 841 LDKLIGYTFRDRCLLQLAMTHPSHHLNFGMN 871


>gi|114600835|ref|XP_001157306.1| PREDICTED: ribonuclease III, nuclear isoform 3 [Pan troglodytes]
          Length = 762

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 494 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 553

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 554 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 612

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 613 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 672

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 673 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 721



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 351 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 410

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
             +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 411 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 470

Query: 158 KTELQEWAHAKFGVTPEYKVT 178
              LQ           E    
Sbjct: 471 LHPLQLQEPNTDRQLIETSPV 491



 Score = 42.6 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 267 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 297


>gi|257068990|ref|YP_003155245.1| RNAse III [Brachybacterium faecium DSM 4810]
 gi|256559808|gb|ACU85655.1| RNAse III [Brachybacterium faecium DSM 4810]
          Length = 250

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 90/204 (44%), Gaps = 2/204 (0%)

Query: 18  ANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            +  LLE +LTH S S+        ERLEFLGD +L L ++  L+    +  EG+L+ R 
Sbjct: 31  QDSGLLELSLTHRSYSYENDGLPHNERLEFLGDAVLQLAVTEHLYAAHPTLPEGDLARRR 90

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            + VS    + +A +LDL +++R+             SI AD  E++I A++L  G +V+
Sbjct: 91  AATVSTRALAVIASKLDLGAYVRLGRGEDLTGGRAKASILADTTEAVIGAVHLALGQDVS 150

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
             FV    +               + +    A             SG +H   +T  V +
Sbjct: 151 RRFVLDLLRPLLDSDEFLEAGYDFKSRLQEIAAAEGENVTYALSESGLEHQKVYTATVTV 210

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEV 219
            G+  A+G   SK+ AE  AA   
Sbjct: 211 PGIVTARGDGASKKDAELAAAQNA 234


>gi|198414531|ref|XP_002121902.1| PREDICTED: similar to ribonuclease III, nuclear, partial [Ciona
            intestinalis]
          Length = 1224

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 11/231 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
            + +  E  IG  F +  LL KA T  ++  +       +RLEFLGD +  L+ S  LF  
Sbjct: 962  KLTKFEDSIGVKFNHIRLLAKAFTWRNVHENILTHGHNQRLEFLGDSVCNLVASAYLFKL 1021

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC--SFMTSIQADVVE 120
            + +  EG L++   ++V+  T S VA EL +  ++  + D         +     AD++E
Sbjct: 1022 YPTHHEGHLTLLRATVVNGRTQSLVATELGMPEYVICTLDNDSTERVPEWREKNLADLLE 1081

Query: 121  SLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGV-----TP 173
            + +AAL++D G++   TF+   +  R  +    +   D K+ LQ+              P
Sbjct: 1082 AFVAALFIDKGLKYVKTFMKICFFPRLKEFILTQEWNDPKSCLQQCCLTLRQEGKEPQLP 1141

Query: 174  EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             Y+++ ++GP H  ++ V V   G    +G   S + AE+ AA   L +  
Sbjct: 1142 TYEISHQTGPSHSRKYVVTVHFKGEEIGKGTGESIQRAERNAARTALNQYN 1192



 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 59/141 (41%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           E  ERLEFLGD ++G   S  LF  F    EG L+     LV+ +  + +A  L L  F+
Sbjct: 819 EHNERLEFLGDAVVGYFTSVHLFLLFPDLSEGALTTFRTVLVNNQHLALLAERLQLDEFM 878

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
             +        + +    A+  E+L+ A+Y++ G+E A     ++  +       +R   
Sbjct: 879 LYAHGPDLCRKADLRHAMANCFEALMGAIYMEAGLERAQRLFGEFLWETEALQRVWRSLP 938

Query: 158 KTELQEWAHAKFGVTPEYKVT 178
             +LQE          +    
Sbjct: 939 LHQLQEEEPVSDRRCIKDVPI 959



 Score = 41.5 bits (95), Expect = 0.093,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
             TLEK+IGY F  R  L  A+ H S   ++  +
Sbjct: 732 LRTLEKKIGYEFKERKWLSHAMNHPSCQMNFGLN 765


>gi|15827877|ref|NP_302140.1| ribonuclease III [Mycobacterium leprae TN]
 gi|221230354|ref|YP_002503770.1| ribonuclease III [Mycobacterium leprae Br4923]
 gi|7531192|sp|O69469|RNC_MYCLE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|3150224|emb|CAA19196.1| ribonuclease III [Mycobacterium leprae]
 gi|13093430|emb|CAC30612.1| RNAse III [Mycobacterium leprae]
 gi|219933461|emb|CAR71754.1| RNAse III [Mycobacterium leprae Br4923]
          Length = 238

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 103/213 (48%), Gaps = 8/213 (3%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL  ALTH S ++ +    + ERLEFLGD +L L I+  LF+      EG+L+    S+
Sbjct: 19  ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLSLTITDELFHRHPDRSEGDLAKLRASV 78

Query: 79  VSAETCSQVARELDLASFIRVSSDLR---KDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           V+ +  + VAR L            R       +  +SI AD +ESL+ A+YL  GIEVA
Sbjct: 79  VNTQALAYVARNLSDGGLGVYLLLGRGETNTGGADKSSILADGMESLLGAIYLHHGIEVA 138

Query: 136 GTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
              + + +      +       D KT LQE   A+    P Y VT  +GPDHD  FT VV
Sbjct: 139 RQVILRLFGTLLDAAPTLGAGLDWKTSLQELTAARGMGVPSYVVTS-TGPDHDKEFTAVV 197

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            +       G+  SK+ AEQ AA+   K   + 
Sbjct: 198 VVMDTEYGSGIGHSKKEAEQKAASAAWKALDVL 230


>gi|300858757|ref|YP_003783740.1| ribonuclease III [Corynebacterium pseudotuberculosis FRC41]
 gi|300686211|gb|ADK29133.1| ribonuclease III [Corynebacterium pseudotuberculosis FRC41]
 gi|302206463|gb|ADL10805.1| Ribonuclease III [Corynebacterium pseudotuberculosis C231]
 gi|302331018|gb|ADL21212.1| Ribonuclease III [Corynebacterium pseudotuberculosis 1002]
 gi|308276705|gb|ADO26604.1| Ribonuclease III [Corynebacterium pseudotuberculosis I19]
          Length = 249

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 4/221 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
             + Y++L   +G     R LL  ALTH S ++      + ERLEFLGD +LGL +++ L
Sbjct: 19  DRINYASLIDSLGIDIP-RDLLMLALTHRSFANENGSLPNNERLEFLGDAVLGLSVASKL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + S  E ++S    S+VS    + +ARE+ L SFI +             SI AD  
Sbjct: 78  YEQYPSRAESDISKMRASIVSRYGLADIAREIKLGSFILLGKGELMTNGRDKESILADTT 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT- 178
           E+L+ A+YL  G EVA   V + ++++   +         +      A     P    T 
Sbjct: 138 EALLGAIYLAHGFEVARNTVLRLFQRKIDTASAVGMHQDWKTTLQERAAERKLPIPVYTA 197

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             +GP+H   FT VV +      +G   +K+ AEQ AA + 
Sbjct: 198 SSTGPEHSQIFTAVVTVGTTVLGEGTGPNKKLAEQAAAHKA 238


>gi|56708583|ref|YP_170479.1| ribonuclease III [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110671054|ref|YP_667611.1| ribonuclease III [Francisella tularensis subsp. tularensis FSC198]
 gi|224457765|ref|ZP_03666238.1| ribonuclease III [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254371212|ref|ZP_04987214.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875445|ref|ZP_05248155.1| ribonuclease III [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|81597132|sp|Q5NER3|RNC_FRATT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|123359364|sp|Q14G66|RNC_FRAT1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54112881|gb|AAV29074.1| NT02FT1862 [synthetic construct]
 gi|56605075|emb|CAG46188.1| Ribonuclease III [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321387|emb|CAL09571.1| Ribonuclease III [Francisella tularensis subsp. tularensis FSC198]
 gi|151569452|gb|EDN35106.1| hypothetical protein FTBG_00981 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841444|gb|EET19880.1| ribonuclease III [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159811|gb|ADA79202.1| Ribonuclease III [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 230

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 9/222 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS     +GY F + +LL +ALTH S     +++YERLEFLGD +L  +I+ +L+  F  
Sbjct: 5   YSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFID 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T +Q+A  L +  +I       +        I  DV E++I A
Sbjct: 62  LAEGKLSQLRSKLVKGATLAQLASSLKMDEYII--LGASEQGGHKREKILEDVFEAVIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD         + K+++             +D+K++LQE         PEY +    G
Sbjct: 120 IYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETIDG 179

Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
            DH+ +FTVV     L    +    S++ AEQ  A ++++  
Sbjct: 180 KDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIEML 221


>gi|33585614|gb|AAH55696.1| Rnasen protein [Mus musculus]
          Length = 780

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 512 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 571

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 572 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 630

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 631 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 690

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 691 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 739



 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 369 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 428

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
             +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 429 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 488

Query: 158 KTELQEWAHAKFGVTPEYKVT 178
              LQ           E    
Sbjct: 489 LHPLQLQEPNTDRQLIETSPV 509



 Score = 42.6 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 285 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 315


>gi|331698524|ref|YP_004334763.1| Ribonuclease 3 [Pseudonocardia dioxanivorans CB1190]
 gi|326953213|gb|AEA26910.1| Ribonuclease 3 [Pseudonocardia dioxanivorans CB1190]
          Length = 238

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 87/211 (41%), Gaps = 6/211 (2%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL  ALTH S ++      + ERLEFLGD +L ++++  L+       EG+L+    
Sbjct: 16  DPELLTLALTHRSYAYENGGLPTNERLEFLGDSVLSIVVTERLYLDHPDLPEGQLAKLRA 75

Query: 77  SLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           S+V+    + VA EL    L + + +             SI AD  E+LI A+YL  G+E
Sbjct: 76  SVVNMNALAGVAAELVPDGLGAHLFLGRGEELTGGRAKASILADATEALIGAVYLQHGLE 135

Query: 134 VAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
            +   + + +      +             +   A   +          GPDH   FT  
Sbjct: 136 TSRDVIHRLFADLLRNAPLLGAGLDWKTSLQELTAAAELGVPEYRITEDGPDHLKTFTAT 195

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             + G     G   +K+ AEQ AAA   +  
Sbjct: 196 AVVGGRELGSGDGRTKKEAEQKAAALAWRTL 226


>gi|315920801|ref|ZP_07917041.1| ribonuclease III [Bacteroides sp. D2]
 gi|313694676|gb|EFS31511.1| ribonuclease III [Bacteroides sp. D2]
          Length = 330

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 5/218 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + +G+   N  L E+AL H S S         + ERLEFLGD IL  ++  +++  F+
Sbjct: 12  FYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   I+ S+           +     + ++  
Sbjct: 72  GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHNSYMYGNAFEAFIGAIYL 131

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
               +   +     +   +      S K     K++L EW+           +      D
Sbjct: 132 DQGYERCKQFMEQRIINRYIDLDKISRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDHD 190

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 191 SNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 228


>gi|313886831|ref|ZP_07820536.1| ribonuclease III [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923721|gb|EFR34525.1| ribonuclease III [Porphyromonas asaccharolytica PR426713P-I]
          Length = 259

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLF 60
             +TL  RIG       L   A+ H S S       + + ERLEFLGD +L   I T L+
Sbjct: 27  NLTTLFDRIGILPVRTDLYLLAMRHRSCSIVGEGGEKLNNERLEFLGDAVLEASICTYLY 86

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               +  EGELS   +SLVS    ++V R L L  +I +      +      +    ++ 
Sbjct: 87  QLHPTWDEGELSKCKSSLVSRPVNNEVGRRLHLERYIIMVPSALDNSVDIYGNTVEALIG 146

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++          E    F+   ++     +    ++ K+EL EW       + E+++   
Sbjct: 147 AIYLDQGYARTQEFVRDFILPTYRDMQAHTVASIQNYKSELIEWVQKHHL-SHEFRLEEH 205

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               HD  F   V I G    +G   SK+ A+Q AA + LK  
Sbjct: 206 EMAPHD-HFIYSVWIDGKPVGRGAGSSKKRAQQEAARDTLKLL 247


>gi|299147039|ref|ZP_07040106.1| ribonuclease 3 [Bacteroides sp. 3_1_23]
 gi|298514924|gb|EFI38806.1| ribonuclease 3 [Bacteroides sp. 3_1_23]
          Length = 355

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 5/218 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + +G+   N  L E+AL H S S         + ERLEFLGD IL  ++  +++  F+
Sbjct: 36  FYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 95

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   I+ S+           +     + ++  
Sbjct: 96  GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHNSYMYGNAFEAFIGAIYL 155

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
               +   +     +   +      S K     K++L EW+           +      D
Sbjct: 156 DQGYERCKQFMEQRIINRYIDLDKISRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDHD 214

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 215 SNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252


>gi|237716739|ref|ZP_04547220.1| ribonuclease III [Bacteroides sp. D1]
 gi|262405515|ref|ZP_06082065.1| ribonuclease III [Bacteroides sp. 2_1_22]
 gi|298480489|ref|ZP_06998686.1| ribonuclease 3 [Bacteroides sp. D22]
 gi|229442722|gb|EEO48513.1| ribonuclease III [Bacteroides sp. D1]
 gi|262356390|gb|EEZ05480.1| ribonuclease III [Bacteroides sp. 2_1_22]
 gi|298273310|gb|EFI14874.1| ribonuclease 3 [Bacteroides sp. D22]
          Length = 331

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 5/218 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + +G+   N  L E+AL H S S         + ERLEFLGD IL  ++  +++  F+
Sbjct: 12  FYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   I+ S+           +     + ++  
Sbjct: 72  GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHNSYMYGNAFEAFIGAIYL 131

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
               +   +     +   +      S K     K++L EW+           +      D
Sbjct: 132 DQGYERCKQFMEQRIINRYIDLDKISRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDHD 190

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 191 SNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 228


>gi|261253900|ref|ZP_05946473.1| ribonuclease III [Vibrio orientalis CIP 102891]
 gi|260937291|gb|EEX93280.1| ribonuclease III [Vibrio orientalis CIP 102891]
          Length = 225

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 6/206 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LEK++GY F +  L+  ALTH S      +  ERLEFLGD IL  +I+  L++ F    
Sbjct: 7   KLEKKLGYQFNDAELISLALTHRSA---NGKHNERLEFLGDSILSFVIADDLYHRFPKVN 63

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG++S    +LV   T +++ RE +L   +++     K       SI AD VE++I A+Y
Sbjct: 64  EGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVEAIIGAIY 123

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD  IEV    +  ++K R         ++D KT LQE+   +    P Y VT   G  H
Sbjct: 124 LDSDIEVVRGIILSWYKTRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVTNIKGEAH 183

Query: 186 DPRFTVVVEISGL-APAQGMDCSKRA 210
           +  FTV  E++G+  P  G   S+R 
Sbjct: 184 NQEFTVSCEVAGIGQPVIGKGTSRRK 209


>gi|229491421|ref|ZP_04385245.1| ribonuclease III [Rhodococcus erythropolis SK121]
 gi|229321706|gb|EEN87503.1| ribonuclease III [Rhodococcus erythropolis SK121]
          Length = 257

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 94/225 (41%), Gaps = 7/225 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
            +  L   +G       LL  ALTH S ++      + ERLEFLGD +LG+ ++  L+  
Sbjct: 15  NHDKLLAAVGVDIE-PGLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTENLYLS 73

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---RKDVCSFMTSIQADVV 119
                EG+L+    S+V+    ++VAR L                        SI AD +
Sbjct: 74  HPDKSEGDLAKIRASVVNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADGM 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVT 178
           ES++ A++L  GIE A   V   +     ++             +   A+ G        
Sbjct: 134 ESILGAIHLQHGIETARRVVLDLFDDLLTRAPLLGAGLDWKTSLQELTAEHGAGVPVYEI 193

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +GPDHD  FT  V ISG     G+  SK+ AEQ AA+   K  
Sbjct: 194 TATGPDHDKEFTATVLISGKPLGVGVGRSKKEAEQKAASSAWKTM 238


>gi|315179118|gb|ADT86032.1| ribonuclease III [Vibrio furnissii NCTC 11218]
          Length = 202

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/201 (36%), Positives = 105/201 (52%), Gaps = 6/201 (2%)

Query: 26  ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
           ALTH S      +  ERLEFLGD IL  +I+  L++ F    EG++S    +LV   T +
Sbjct: 2   ALTHRSA---NGKHNERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGNTLA 58

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
           ++ RE DL  ++++     K       SI AD VE++I A+YLD  IEVA   V  +++ 
Sbjct: 59  ELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEVARATVLSWYQS 118

Query: 146 RALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQ 202
           R         ++D KT LQE+   +    P Y VT   G  H+  FTV  +I+G+  P  
Sbjct: 119 RLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHNQEFTVACDIAGIGAPVI 178

Query: 203 GMDCSKRAAEQVAAAEVLKRE 223
           G   S+R AEQ AA   L++ 
Sbjct: 179 GKGTSRRKAEQAAAETALEQL 199


>gi|4768838|gb|AAD29637.1|AF116910_1 putative ribonuclease III [Homo sapiens]
          Length = 541

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 273 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 332

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD++ES 
Sbjct: 333 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLLESF 391

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 392 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 451

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 452 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 500



 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 130 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 189

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
             +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 190 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 249

Query: 158 KTELQEWAHAKFGVTPEYKVT 178
              LQ           E    
Sbjct: 250 LHPLQLQEPNTDRQLIETSPV 270



 Score = 42.6 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9  LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
          L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 46 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 76


>gi|312881718|ref|ZP_07741495.1| ribonuclease III [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370608|gb|EFP98083.1| ribonuclease III [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 225

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 109/213 (51%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++    TLEK++GY F +  L+  ALTH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIVTLEKKLGYQFDDAELISLALTHRSA---NSKHNERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV  +T +++ RE  L  ++++     K       SI AD VE
Sbjct: 57  QRFPQINEGDMSRMRATLVRGKTLAELGREFQLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIE--VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+Y+D  IE            +  A++ G  ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYMDSNIEVVRGIILAWYQGRLEAIEPGASQKDPKTRLQEFLQGRRKPLPAYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  H+  FTV  E++G+  P  G   S+R 
Sbjct: 177 NIKGEAHNQEFTVSCEVAGINQPVVGKGTSRRK 209


>gi|300783718|ref|YP_003764009.1| ribonuclease III [Amycolatopsis mediterranei U32]
 gi|299793232|gb|ADJ43607.1| ribonuclease III [Amycolatopsis mediterranei U32]
          Length = 234

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 60/211 (28%), Positives = 91/211 (43%), Gaps = 6/211 (2%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL  +LTH S ++        ERLEFLGD +LGL+++  L+N      EG+L+    
Sbjct: 10  DPELLRLSLTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLYNTHPDLPEGQLAKLRA 69

Query: 77  SLVSAETCSQVARELDLASFIRVSSDL---RKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           S+V+    ++VAR L                        SI AD +E++I A+YL+ GIE
Sbjct: 70  SVVNMHALARVARGLGEGGLGAHLLLGKGEELTGGRDKASILADGLEAVIGAVYLEHGIE 129

Query: 134 VAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           +A   V   +    A    +          +   A  G+         +GPDH   FT  
Sbjct: 130 IARKLVHHLFDGLLAEAPLRGAGLDWKTSLQELTASAGLGVPEYKVEDTGPDHRKEFTAT 189

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V ++G     G   +K+ AEQ AA    +  
Sbjct: 190 VLVAGRPLGHGAGSTKKEAEQKAAETAWRSL 220


>gi|160333099|ref|NP_001103942.1| ribonuclease 3 [Danio rerio]
 gi|124481653|gb|AAI33135.1| Zgc:158612 [Danio rerio]
          Length = 1289

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E  IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1026 KLTNFEDAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1085

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F   +   ++ V        AD++ES 
Sbjct: 1086 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAITNDKTKRPVALRT-KTLADLLESF 1144

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1145 IAALYIDKDLEFVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1204

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1205 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1253



 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 59/129 (45%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L++ F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 883  NHNERLEFLGDAVVEFLTSVHLYHLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 942

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+GG+E A     +           +    
Sbjct: 943  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGGLEEAKDLFGRLLFNTEDMREVWLNYP 1002

Query: 158  KTELQEWAH 166
               LQ    
Sbjct: 1003 PHPLQVQEP 1011



 Score = 39.5 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F  R LL+ A+TH S   ++  +
Sbjct: 799 LDKLIGYMFKERCLLQLAMTHPSHHLNFGMN 829


>gi|258592173|emb|CBE68482.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [NC10 bacterium
           'Dutch sediment']
          Length = 246

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 71/214 (33%), Positives = 102/214 (47%), Gaps = 5/214 (2%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           G+ F N +LLE ALTH S +   Q      Y+RLEFLGD +  L +S  L +   +A EG
Sbjct: 18  GHRFRNSTLLEAALTHPSSTDPSQADVRLRYQRLEFLGDAVWSLYVSDALVSLLPTASEG 77

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           EL+ R   LVSA   + +A+   LA  + +S           T + +   E++I A+YLD
Sbjct: 78  ELTQRRAGLVSATALADMAQLHGLAPLLLLSKGEELTGGRLKTRVLSSSFEAVIGAIYLD 137

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           GG+E       +              D KT LQ  A +    TP Y++  RSG  H P F
Sbjct: 138 GGLEAIRDLAREACVNTLEGE-HVTLDPKTALQHLAQSLLHATPRYRLIRRSGAPHAPTF 196

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            V V +     A+G   +++ AE+ AA + L   
Sbjct: 197 EVEVIVGQSPIAKGKGRNRQEAERAAAQDALSSL 230


>gi|237750847|ref|ZP_04581327.1| ribonuclease III [Helicobacter bilis ATCC 43879]
 gi|229373292|gb|EEO23683.1| ribonuclease III [Helicobacter bilis ATCC 43879]
          Length = 228

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 3/203 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LE+++ Y F N+  L +AL H S    Y  + ERLEFLGD +L L++   LF  F  
Sbjct: 9   IHILEQKLNYTFKNKKKLAEALAHKSFKKPY--NNERLEFLGDAVLDLVVGEYLFETFTQ 66

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG LS    SLV+  +  ++A+ ++L  ++ +S+    +      SI ++  E+++A 
Sbjct: 67  KNEGSLSKMRASLVNEASFCKLAQSINLGEYLNLSTSEINNGGRLKASILSNAFEAIMAV 126

Query: 126 LYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +YL+ G++            +  +       D K+ LQE+   +FG  P Y++  + GPD
Sbjct: 127 IYLESGLDSVKRVFYPILHNEFRINEELLTSDYKSSLQEYTQERFGCIPSYEMLSQEGPD 186

Query: 185 HDPRFTVVVEISGLAPAQGMDCS 207
           H   FT+ V+I     A     S
Sbjct: 187 HKKIFTMQVKIQNKIYASANGVS 209


>gi|332670942|ref|YP_004453950.1| ribonuclease III [Cellulomonas fimi ATCC 484]
 gi|332339980|gb|AEE46563.1| ribonuclease III [Cellulomonas fimi ATCC 484]
          Length = 258

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 4/220 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
             L +++G    +  LL  ALTH S +H      + ERLEFLGD +LGL+++  L+    
Sbjct: 6   DRLVEKLGVHL-DPELLVLALTHRSFAHEAGGIPTNERLEFLGDTVLGLVVTESLYRRHP 64

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+    + VS    + VARELDL +++ +         +   SI +D +E+L  
Sbjct: 65  EQPEGALAKMRAATVSQRALAGVARELDLGAYVLLGKGELATGGADKDSILSDTLEALFG 124

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGP 183
           A+YL  G+E A   VD++       +         +      +               GP
Sbjct: 125 AVYLAHGLETARVVVDRFVGPTLDAAAALGAGLDWKTSLQELSAALGLGAPSYDVVGEGP 184

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   FT    I+G     G   +K+ AEQ AA +  +  
Sbjct: 185 DHARTFTARAVIAGEPRGAGSGPAKKLAEQHAAEDAYRAL 224


>gi|124004144|ref|ZP_01688990.1| ribonuclease III [Microscilla marina ATCC 23134]
 gi|123990214|gb|EAY29713.1| ribonuclease III [Microscilla marina ATCC 23134]
          Length = 248

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 8/224 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHF 63
            +++ IG+   N +L + AL+H+S S      ++ES ERLE+LGD ILG +++  LF  +
Sbjct: 23  AIKQIIGHKPFNLALYQLALSHTSASKSLQDGFKESNERLEYLGDAILGAIVADYLFKKY 82

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              +EG L+     +V+ E+ +Q++R++ +   IR   + +        S+  D +E+L+
Sbjct: 83  PFKEEGFLTEIRARIVNRESLNQLSRKMGIQDLIRYEGNPK--SNFTYKSMGGDALEALV 140

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE--LQEWAHAKFGVTPEYKVTFRS 181
            A+YLD G      FV +      L       + +    +      K     ++++    
Sbjct: 141 GAVYLDKGFHYCRKFVVRKIVLGHLDLDDIIENNQNYKSIIIEWAQKNNRDLKFEIVREE 200

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           G  H  +F   V I     A+G   SK+ AEQ AA +  +   +
Sbjct: 201 GSKHQRQFIAQVIIDDEPVAKGSGFSKKKAEQAAAEKTCRTLKL 244


>gi|165973380|ref|NP_001107152.1| drosha, ribonuclease type III [Xenopus (Silurana) tropicalis]
 gi|163916533|gb|AAI57521.1| rnasen protein [Xenopus (Silurana) tropicalis]
          Length = 1325

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 10/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +  T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1061 KLTKFEEAIGVEFTHVRLLARVFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1120

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F   +   ++ V        AD++ES 
Sbjct: 1121 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAITNDKTKRPVVLRT-KTLADLLESF 1179

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1180 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1239

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 1240 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 1288



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 57/125 (45%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F   +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 918  NHNERLEFLGDAVVEFLTSVHLYYLFPLLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 977

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+L+ A+YL+GG+E A     +           +    
Sbjct: 978  LYAHGPDLCRESDLRHAMANCFEALMGAVYLEGGLEEAKQLFGRLLFGNQDLRDVWLNYP 1037

Query: 158  KTELQ 162
               LQ
Sbjct: 1038 LHPLQ 1042



 Score = 41.1 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 834 LDKLIGYIFTDRCLLQLAMTHPSHHLNFGMN 864


>gi|224536731|ref|ZP_03677270.1| hypothetical protein BACCELL_01607 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521647|gb|EEF90752.1| hypothetical protein BACCELL_01607 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 296

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 95/227 (41%), Gaps = 5/227 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57
               Y    K +G+   N  L ++AL H S S         + ERLEFLGD IL  ++  
Sbjct: 16  DKESYFCFYKILGFYPRNIQLYQQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGD 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +++ HF+  +EG L+   + +V  ET +++A E+ L   ++ S+           +    
Sbjct: 76  IVYKHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSTRSSSHNSYMYGNAFEA 135

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            + ++      +         + K +      S K     K++L EW+           +
Sbjct: 136 FIGAIYLDQGYERCKRFMEEKIFKNYIDLDKMSRKEVNF-KSKLIEWSQKSKVEVSFELI 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                 D++P F   + I G++  +G   SK+ ++Q AA   LK+  
Sbjct: 195 EQFLDEDYNPMFHTEIRIEGISAGKGTGYSKKESQQNAAQAALKKIK 241


>gi|254481213|ref|ZP_05094458.1| ribonuclease III [marine gamma proteobacterium HTCC2148]
 gi|214038376|gb|EEB79038.1| ribonuclease III [marine gamma proteobacterium HTCC2148]
          Length = 232

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 73/210 (34%), Positives = 115/210 (54%), Gaps = 6/210 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L++ +GY FA++SLL+ ALTH S+      + ERLEFLGD I+  +I+  L+  F  A
Sbjct: 9   ERLQRALGYQFADKSLLQLALTHRSVG---GRNNERLEFLGDSIVNHIIAEALYRQFPDA 65

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG++S    SLV  +T ++VARELDL   + +    RK       SI AD +E++  A+
Sbjct: 66  REGDMSRMRASLVKGDTLAEVARELDLGEHLLLGPGERKSGGKRRGSILADGLEAVAGAI 125

Query: 127 YLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            +D  +    + V  ++++R          +DAKT LQE+   +    PEY++    G D
Sbjct: 126 LIDSDVAACRSCVLTWFRERLDLLSLDGADKDAKTLLQEYLQGRRSPLPEYELLGVVGED 185

Query: 185 HDPRFTVVVEISG-LAPAQGMDCSKRAAEQ 213
           H+ +F V   I+  +   +G   S+R AEQ
Sbjct: 186 HEQQFHVACRIAKPVLVVEGDGSSRRKAEQ 215


>gi|167764094|ref|ZP_02436221.1| hypothetical protein BACSTE_02477 [Bacteroides stercoris ATCC
           43183]
 gi|167698210|gb|EDS14789.1| hypothetical protein BACSTE_02477 [Bacteroides stercoris ATCC
           43183]
          Length = 315

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             K +G+   N    E+AL H S S         + ERLEFLGD IL  ++  +++ HF+
Sbjct: 23  FYKILGFFPRNIRFYEQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFE 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   ++ S+           +     + ++  
Sbjct: 83  GRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSTRSSSHNSYMYGNAFEAFIGAIYL 142

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
               +   +     + K +      S K     K++L EW+           +      D
Sbjct: 143 DQGYERCKQFMEKKILKNYIDLDKMSRKEVNF-KSKLIEWSQKTKMEVSFELIEQFLDQD 201

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           ++P F   V I GL+   G   SK+ ++Q AA   LK+  
Sbjct: 202 YNPMFHTEVRIEGLSAGTGTGYSKKESQQNAAQMALKKIK 241


>gi|73963944|ref|XP_868522.1| PREDICTED: similar to Endoribonuclease Dicer (Helicase with RNase
           motif) (Helicase-MOI) isoform 3 [Canis familiaris]
          Length = 821

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 565 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 624

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
               G L+   ++LV+    + +A + D   +                            
Sbjct: 625 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 684

Query: 98  -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 685 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 744

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 745 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 800

Query: 213 QVAAAEVLKREG 224
             AA   L+   
Sbjct: 801 SAAARRALRSLK 812



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 54/185 (29%), Gaps = 16/185 (8%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 192 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 249

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           VS     ++ ++  L                            +          E     
Sbjct: 250 VSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSNADKWEKDEMT 302

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
            D       L       D + E   W   K     E         +H         I  +
Sbjct: 303 KDCMLANGKLDEDFEEDDEEEEDLMWRAPKEDADYEDDFLEYD-QEHIK------FIDNM 355

Query: 199 APAQG 203
               G
Sbjct: 356 LMGSG 360


>gi|330446941|ref|ZP_08310592.1| ribonuclease III [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491132|dbj|GAA05089.1| ribonuclease III [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 224

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 103/207 (49%), Gaps = 6/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L++++GY F N  L+  ALTH S         ERLEFLGD IL  +++  L++ F S 
Sbjct: 6   NRLQRKLGYQFNNSELMTLALTHRSA---NGNHNERLEFLGDSILSFVVADDLYHRFPSV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV  +T +++ RE +L   + +     K       SI AD VE++I A+
Sbjct: 63  DEGDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFRRDSILADCVEAIIGAI 122

Query: 127 YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  IE            +   ++ G  ++D KT LQE    +    P Y V    G  
Sbjct: 123 YLDSDIEKVREIVLTWYKTRLETIEPGINQKDPKTRLQECLQGRRLPLPAYTVIKVQGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210
           H+  FTV  +++GL  P  G   S+R 
Sbjct: 183 HNQEFTVQCDVTGLDKPVIGKGGSRRK 209


>gi|307195788|gb|EFN77602.1| Endoribonuclease Dcr-1 [Harpegnathos saltator]
          Length = 1807

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 87/253 (34%), Gaps = 29/253 (11%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLL 59
            M    Y  LEK IGY F + S L +A TH+S   +   + Y+RLEFLGD +L  LI+  L
Sbjct: 1545 MMLDGYEELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHL 1604

Query: 60   FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
            +        G L+   ++LV+    + +A       + R  S     V +    IQ +  
Sbjct: 1605 YEDSRQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENG 1664

Query: 120  ESLIAALYLDGGIEVAGTFVDKYWK------------------------QRALKSGKFRR 155
             S+    YL G  E       +  K                             +     
Sbjct: 1665 HSISEEYYLIGKEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSE 1724

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAA 211
              +            +      T + G         R  V V++ G    +G+  + R A
Sbjct: 1725 IEQFSTNVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIA 1784

Query: 212  EQVAAAEVLKREG 224
            +  AA   LK+  
Sbjct: 1785 KCTAAKCALKKLK 1797



 Score = 43.4 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             SL+ +ALT S+ +     + ERLE +GD  L   I+T L+  +D+  EG+LS   +  V
Sbjct: 1272 PSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQV 1329

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            S     ++ R+  L   +  +     D            +E
Sbjct: 1330 SNLNLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELE 1370


>gi|332970079|gb|EGK09076.1| ribonuclease III [Kingella kingae ATCC 23330]
          Length = 241

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 6/221 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S+L+ ++GY F   + L++ALTH S    + ++YERLEF+GD IL  +I+ +LF  F + 
Sbjct: 11  SSLQTKLGYIFKQPTWLQQALTHRSA---HSQNYERLEFVGDAILDYVITLMLFEAFPNL 67

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG LSV    LV   T ++VAREL L   + +     K       SI AD +E++ AA+
Sbjct: 68  PEGRLSVLRTHLVKEATLAEVARELGLGKALILGVGELKSGGYDRASILADALEAIFAAI 127

Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D  +  A   + + + +  + ++  +  +D KT LQE   A    TP+Y++  ++G  
Sbjct: 128 RFDADLPTAERVIRQLFAERVQQIQVQQPDKDHKTRLQEALQAHRLPTPKYRIERQTGEG 187

Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREG 224
            D  F V  ++  L         S+RAAEQ  A + L+   
Sbjct: 188 SDSHFDVSCDLGELGHITYASGSSRRAAEQECAKQALQWLN 228


>gi|296475171|gb|DAA17286.1| endoribonuclease Dicer [Bos taurus]
          Length = 1922

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111
                G L+   ++LV+    + +A + D   + +  S     V                 
Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786

Query: 112  -------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                    D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +  +T            +D +  V VE+ G    +G+  S R A+
Sbjct: 1847 SANVPRSPVRELLEMEPEITKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1902

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1903 SAAARRALRSLK 1914



 Score = 38.0 bits (86), Expect = 0.94,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 57/186 (30%), Gaps = 17/186 (9%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL-LFNHFDSAKEGELSVRFNS 77
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T+ L      A EG LS   + 
Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSYMRSK 1350

Query: 78   LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
             VS     ++ ++  L S + VS                     +          E    
Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVSIFDPPVNG-------LPPGYVVNQDKSNTEKWEKDEM 1403

Query: 138  FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
              D       L       + + E   W   K     E         +H         I  
Sbjct: 1404 TKDCMLANGKLDDDFEEEEEEEEDLMWRAHKEDADDEDDFLEYD-QEHIK------FIDN 1456

Query: 198  LAPAQG 203
            +    G
Sbjct: 1457 MLMGSG 1462


>gi|73963940|ref|XP_537547.2| PREDICTED: similar to dicer1 isoform 1 [Canis familiaris]
          Length = 1923

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1846

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1847 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1902

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1903 SAAARRALRSLK 1914



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 54/185 (29%), Gaps = 16/185 (8%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351

Query: 79   VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
            VS     ++ ++  L                            +          E     
Sbjct: 1352 VSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSNADKWEKDEMT 1404

Query: 139  VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
             D       L       D + E   W   K     E         +H         I  +
Sbjct: 1405 KDCMLANGKLDEDFEEDDEEEEDLMWRAPKEDADYEDDFLEYD-QEHIK------FIDNM 1457

Query: 199  APAQG 203
                G
Sbjct: 1458 LMGSG 1462


>gi|42733596|ref|NP_976235.1| endoribonuclease Dicer [Bos taurus]
 gi|257051053|sp|Q6TUI4|DICER_BOVIN RecName: Full=Endoribonuclease Dicer
 gi|38679195|gb|AAR26432.1| dicer [Bos taurus]
          Length = 1923

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111
                G L+   ++LV+    + +A + D   + +  S     V                 
Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786

Query: 112  -------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                    D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +  +T            +D +  V VE+ G    +G+  S R A+
Sbjct: 1847 SANVPRSPVRELLEMEPEITKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1902

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1903 SAAARRALRSLK 1914



 Score = 38.0 bits (86), Expect = 0.94,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 57/186 (30%), Gaps = 17/186 (9%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL-LFNHFDSAKEGELSVRFNS 77
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T+ L      A EG LS   + 
Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSYMRSK 1350

Query: 78   LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
             VS     ++ ++  L S + VS                     +          E    
Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVSIFDPPVNG-------LPPGYVVNQDKSNTEKWEKDEM 1403

Query: 138  FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
              D       L       + + E   W   K     E         +H         I  
Sbjct: 1404 TKDCMLANGKLDDDFEEEEEEEEDLMWRAHKEDADDEDDFLEYD-QEHIK------FIDN 1456

Query: 198  LAPAQG 203
            +    G
Sbjct: 1457 MLMGSG 1462


>gi|194225335|ref|XP_001496219.2| PREDICTED: similar to Endoribonuclease Dicer (Helicase with RNase
            motif) (Helicase MOI) [Equus caballus]
          Length = 1785

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1529 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1588

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1589 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1648

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1649 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1708

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1709 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1764

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1765 SAAARRALRSLK 1776



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1158 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1215

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1216 VSNCNLYRLGKKKG 1229


>gi|73963946|ref|XP_868526.1| PREDICTED: similar to dicer1 isoform 4 [Canis familiaris]
          Length = 1900

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1644 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1703

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1704 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1763

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1764 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1823

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1824 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1879

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1880 SAAARRALRSLK 1891



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 54/185 (29%), Gaps = 16/185 (8%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351

Query: 79   VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
            VS     ++ ++  L                            +          E     
Sbjct: 1352 VSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSNADKWEKDEMT 1404

Query: 139  VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
             D       L       D + E   W   K     E         +H         I  +
Sbjct: 1405 KDCMLANGKLDEDFEEDDEEEEDLMWRAPKEDADYEDDFLEYD-QEHIK------FIDNM 1457

Query: 199  APAQG 203
                G
Sbjct: 1458 LMGSG 1462


>gi|326920976|ref|XP_003206741.1| PREDICTED: endoribonuclease Dicer-like [Meleagris gallopavo]
          Length = 1921

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y+F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1665 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1784

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1900

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1901 SAAARRALRSLK 1912



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1352 VSNCNLYRLGKKKG 1365


>gi|254281274|ref|NP_001156875.1| endoribonuclease Dicer [Taeniopygia guttata]
          Length = 1921

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y+F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1665 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1784

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1900

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1901 SAAARRALRSLK 1912



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1352 VSNCNLYRLGKKKG 1365


>gi|94957752|ref|NP_001035555.1| endoribonuclease Dicer [Gallus gallus]
 gi|257051054|sp|Q25BN1|DICER_CHICK RecName: Full=Endoribonuclease Dicer
 gi|90074858|dbj|BAE87103.1| Dicer protein [Gallus gallus]
          Length = 1921

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y+F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1665 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1784

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1900

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1901 SAAARRALRSLK 1912



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1352 VSNCNLYRLGKKKG 1365


>gi|255326576|ref|ZP_05367653.1| ribonuclease III [Rothia mucilaginosa ATCC 25296]
 gi|255296316|gb|EET75656.1| ribonuclease III [Rothia mucilaginosa ATCC 25296]
          Length = 229

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 104/225 (46%), Gaps = 6/225 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
           ++    L KR+G    +      +LTH S +      E  ERLEFLGD +L L I+  ++
Sbjct: 6   SVDTRELRKRLGVDI-DAETFLLSLTHRSYAFENPGVEHNERLEFLGDSVLSLAIAEEVY 64

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EGEL    + +VS    ++VAR+LDL  +I +         +   SI AD +E
Sbjct: 65  RRYPDLPEGELVKLHHVVVSTVALAKVARDLDLGRYILLGKGEIHTGGADKDSILADTME 124

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++    YL+ G E A   V +         K     RD KTEL   A A+      Y+VT
Sbjct: 125 AIFGLTYLECGREAARDLVLRLIAPLLDDEKVLNSGRDWKTELLNLATARGWGDVRYEVT 184

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GPDH   +T V  ++      G+  SK+ AE++AA +  +  
Sbjct: 185 G-EGPDHARVYTAVAIVANQQTGTGVGPSKKEAERLAAEQAYRVL 228


>gi|313844119|ref|YP_004061782.1| hypothetical protein OlV1_149c [Ostreococcus lucimarinus virus
           OlV1]
 gi|312599504|gb|ADQ91526.1| hypothetical protein OlV1_149c [Ostreococcus lucimarinus virus
           OlV1]
          Length = 230

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 4/226 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTL 58
                  +EK +G    N SL  +A TH S    Y    ES+E LEF+GD +LG +I+  
Sbjct: 1   MNFNQQDIEKLVGTKIKNLSLYHRAFTHKSALKEYEQFNESFETLEFMGDSVLGFIITKF 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF+ ++  +EG L+     LV +ET + +A ++ L + + +     ++  +    I  DV
Sbjct: 61  LFDRYEERQEGFLTKARTKLVRSETLADIALKMGLNNMVLMDEKGMRNNWNNNPKILEDV 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            E+L+ A+Y+D G+  A  FV + +                           +       
Sbjct: 121 FEALVGAIYMDLGLLHAKEFVLRIYNDPNFIDLNKIMIDDNFKDHLMKYCQIMNIPLPEY 180

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              G  H+  F +   I+G    +G   SK+ AEQ+AA    ++  
Sbjct: 181 RVVG-HHEGIFYIDTYINGQFGGRGEAKSKKQAEQLAARAFFEQLK 225


>gi|237720469|ref|ZP_04550950.1| ribonuclease III [Bacteroides sp. 2_2_4]
 gi|229450220|gb|EEO56011.1| ribonuclease III [Bacteroides sp. 2_2_4]
          Length = 328

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 11/221 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + +G+   N  L E+AL H S S         + ERLEFLGD IL  ++  +++  F+
Sbjct: 12  FYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   I+ S+          + +  +  E+ I 
Sbjct: 72  GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHN----SYMYGNAFEAFIG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD G E    F+++    R +   K  R   + K++L EW+           +    
Sbjct: 128 AIYLDQGYERCKLFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL 187

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             D +P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 188 DHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 228


>gi|160883983|ref|ZP_02064986.1| hypothetical protein BACOVA_01957 [Bacteroides ovatus ATCC 8483]
 gi|156110713|gb|EDO12458.1| hypothetical protein BACOVA_01957 [Bacteroides ovatus ATCC 8483]
          Length = 352

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 11/221 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + +G+   N  L E+AL H S S         + ERLEFLGD IL  ++  +++  F+
Sbjct: 36  FYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 95

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   I+ S+          + +  +  E+ I 
Sbjct: 96  GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHN----SYMYGNAFEAFIG 151

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD G E    F+++    R +   K  R   + K++L EW+           +    
Sbjct: 152 AIYLDQGYERCKLFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL 211

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             D +P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 212 DHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252


>gi|160888577|ref|ZP_02069580.1| hypothetical protein BACUNI_00994 [Bacteroides uniformis ATCC 8492]
 gi|156861891|gb|EDO55322.1| hypothetical protein BACUNI_00994 [Bacteroides uniformis ATCC 8492]
          Length = 306

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
             + +G+   +  + ++AL H SIS   ++    + ERLEFLGD IL  ++  +++ HF+
Sbjct: 37  FYRILGFFPRDIKVYQQALLHKSISMRSEKGRPINNERLEFLGDAILDAIVGDIVYRHFE 96

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   ++ S+           +     + ++  
Sbjct: 97  GRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSTRSSSHNSYMYGNAFEAFIGAIYL 156

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
               D   +     + K +      S K     K++L EW+           +      +
Sbjct: 157 DQGYDRCKQFMEEKIFKNYIDLDKMSRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDEE 215

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           ++P F   V I G++   G   SK+ ++Q AA   LK+  
Sbjct: 216 YNPMFHTEVRIEGISAGTGTGYSKKESQQNAAQMALKKIK 255


>gi|149926460|ref|ZP_01914721.1| ribonuclease III [Limnobacter sp. MED105]
 gi|149824823|gb|EDM84037.1| ribonuclease III [Limnobacter sp. MED105]
          Length = 226

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 71/212 (33%), Positives = 98/212 (46%), Gaps = 6/212 (2%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           Y+F +++LL  ALTH S S  +    ERLEFLGD +L    S LLF       EG++S  
Sbjct: 3   YSFKDQALLRLALTHRSYSSHH---NERLEFLGDSVLNCAASILLFETHPDMDEGKMSRV 59

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
            + LV  +  + V R L L  ++ + +   +   +   SI AD +E+L  A+ LD G E 
Sbjct: 60  RSHLVKQDCLAMVGRNLLLDQYLFLGAGELRSAKTIKDSIVADALEALFGAILLDSGFEA 119

Query: 135 AGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           A   V +  K            +D KT LQE    K    P Y+V    G    P F+V 
Sbjct: 120 ARDCVVRLLKPVMLETPIESMGKDPKTRLQELLQGKRMKLPMYRVLVEGGTSASPEFSVE 179

Query: 193 VEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
             +  L   + G   S+R AEQ AA  VL   
Sbjct: 180 CAVEDLEITKVGQGHSRRVAEQHAAQAVLIEL 211


>gi|270294929|ref|ZP_06201130.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317477924|ref|ZP_07937108.1| ribonuclease III [Bacteroides sp. 4_1_36]
 gi|270274176|gb|EFA20037.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316905940|gb|EFV27710.1| ribonuclease III [Bacteroides sp. 4_1_36]
          Length = 309

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
             + +G+   +  + ++AL H SIS   ++    + ERLEFLGD IL  ++  +++ HF+
Sbjct: 40  FYRILGFFPRDIKVYQQALLHKSISMRSEKGRPINNERLEFLGDAILDAIVGDIVYRHFE 99

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   ++ S+           +     + ++  
Sbjct: 100 GRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSTRSSSHNSYMYGNAFEAFIGAIYL 159

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
               D   +     + K +      S K     K++L EW+           +      +
Sbjct: 160 DQGYDRCKQFMEEKIFKNYIDLDKMSRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDEE 218

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           ++P F   V I G++   G   SK+ ++Q AA   LK+  
Sbjct: 219 YNPMFHTEVRIEGISAGTGTGYSKKESQQNAAQMALKKIK 258


>gi|114765524|ref|ZP_01444632.1| Ribonuclease III [Pelagibaca bermudensis HTCC2601]
 gi|114542117|gb|EAU45149.1| Ribonuclease III [Roseovarius sp. HTCC2601]
          Length = 227

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 87/211 (41%), Positives = 123/211 (58%), Gaps = 1/211 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     LE+R+G+ F    LL +ALTHSS+S   +E  +RLEFLGDR+LGL+++  L
Sbjct: 1   MKRSAEIIALEERLGHRFDRPELLRRALTHSSMSAPGREDNQRLEFLGDRVLGLVMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                +A EG+L+ R+N+LV  ETC+ VARE+DL + +++             ++  D +
Sbjct: 61  LADDRNASEGQLAPRYNALVRKETCADVAREVDLGAALKLGRSEMMSGGRRKMALLGDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+YLD G E A   V + W  R  +  +  RDAKT LQEWA A+    P Y  T 
Sbjct: 121 EAVIAAVYLDAGFEAAKDLVRRLWGDRVTRVDEDARDAKTSLQEWAQARGMPPPAYVETA 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
           RSGPDH P FT+   +S    AQ    +KR 
Sbjct: 181 RSGPDHAPVFTIEARLSSGETAQATAGAKRK 211


>gi|126290301|ref|XP_001367933.1| PREDICTED: similar to Dicer protein [Monodelphis domestica]
          Length = 1923

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1667 FENFEKKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1846

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1847 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1902

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1903 SAAARRALRSLK 1914



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1296 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1353

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1354 VSNCNLYRLGKKKG 1367


>gi|260642610|ref|ZP_05416578.2| ribonuclease III [Bacteroides finegoldii DSM 17565]
 gi|260621352|gb|EEX44223.1| ribonuclease III [Bacteroides finegoldii DSM 17565]
          Length = 270

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 91/218 (41%), Gaps = 5/218 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + +G+   N  L E+AL H S S         + ERLEFLGD IL  ++  +++ HF+
Sbjct: 23  FYRILGFYPRNIQLYEQALLHKSTSLRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFE 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   I+ S+           +     + ++  
Sbjct: 83  GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHNSYMYGNAFEAFIGAIYL 142

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
               +   +     +   +    + S K     K++L EW+           +      D
Sbjct: 143 DQGYERCKQFMEERIINRYIDLDILSRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDRD 201

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +P F   V I G     G   SK+ ++Q AA   +K+
Sbjct: 202 SNPVFQTEVRIEGFPAGTGTGYSKKESQQNAAQMAIKK 239


>gi|153807268|ref|ZP_01959936.1| hypothetical protein BACCAC_01546 [Bacteroides caccae ATCC 43185]
 gi|149130388|gb|EDM21598.1| hypothetical protein BACCAC_01546 [Bacteroides caccae ATCC 43185]
          Length = 329

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 5/218 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + +G+   N  L E+AL H S S         + ERLEFLGD IL  ++  +++  F+
Sbjct: 36  FYRILGFYPRNIQLYEQALLHKSSSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 95

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   I+ S+           +     + ++  
Sbjct: 96  GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHNSYMYGNAFEAFIGAIYL 155

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
               +   +     +   +      S K     K++L EW+           +      D
Sbjct: 156 DQGYERCKQFMEQRIINRYIDLDKISRKEVNF-KSKLIEWSQKSKLEVSFELIEQFLDQD 214

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 215 SNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252


>gi|257051057|sp|Q8R418|DICER_MOUSE RecName: Full=Endoribonuclease Dicer; AltName:
            Full=Double-strand-specific ribonuclease mDCR-1
          Length = 1916

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1660 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1719

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114
                G L+   ++LV+    + +A + D   + +  S     V                 
Sbjct: 1720 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1779

Query: 115  ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                    D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 1780 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1839

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1840 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1895

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1896 SAAARRALRSLK 1907



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1351 VSNCNLYRLGKKKG 1364


>gi|148686840|gb|EDL18787.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Mus musculus]
          Length = 1916

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1660 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1719

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114
                G L+   ++LV+    + +A + D   + +  S     V                 
Sbjct: 1720 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1779

Query: 115  ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                    D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 1780 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1839

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1840 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1895

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1896 SAAARRALRSLK 1907



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1351 VSNCNLYRLGKKKG 1364


>gi|148686841|gb|EDL18788.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Mus musculus]
          Length = 1908

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1652 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1711

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114
                G L+   ++LV+    + +A + D   + +  S     V                 
Sbjct: 1712 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1771

Query: 115  ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                    D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 1772 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1831

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1832 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1887

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1888 SAAARRALRSLK 1899



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1285 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1342

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1343 VSNCNLYRLGKKKG 1356


>gi|117168271|ref|NP_683750.2| endoribonuclease Dicer [Mus musculus]
 gi|225000568|gb|AAI72621.1| Dicer1, Dcr-1 homolog (Drosophila) [synthetic construct]
          Length = 1906

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1650 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1709

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114
                G L+   ++LV+    + +A + D   + +  S     V                 
Sbjct: 1710 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1769

Query: 115  ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                    D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 1770 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1829

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1830 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1885

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1886 SAAARRALRSLK 1897



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1283 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1340

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1341 VSNCNLYRLGKKKG 1354


>gi|19072784|gb|AAL84637.1|AF484523_1 endoribonuclease Dicer [Mus musculus]
          Length = 361

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 105 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 164

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114
               G L+   ++LV+    + +A + D   + +  S     V                 
Sbjct: 165 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 224

Query: 115 ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                   D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 225 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 284

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 285 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 340

Query: 213 QVAAAEVLKREG 224
             AA   L+   
Sbjct: 341 SAAARRALRSLK 352


>gi|20385913|gb|AAM21495.1|AF430845_1 dicer-like protein [Mus musculus]
          Length = 1917

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1661 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1720

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114
                G L+   ++LV+    + +A + D   + +  S     V                 
Sbjct: 1721 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1780

Query: 115  ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                    D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 1781 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1840

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1841 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1896

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1897 SAAARRALRSLK 1908



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1352 VSNCNLYRLGKKKG 1365


>gi|74204500|dbj|BAE23515.1| unnamed protein product [Mus musculus]
          Length = 514

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 258 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 317

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114
               G L+   ++LV+    + +A + D   + +  S     V                 
Sbjct: 318 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 377

Query: 115 ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                   D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 378 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 437

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 438 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 493

Query: 213 QVAAAEVLKREG 224
             AA   L+   
Sbjct: 494 SAAARRALRSLK 505


>gi|37360146|dbj|BAC98051.1| mKIAA0928 protein [Mus musculus]
          Length = 1475

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1219 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1278

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114
                G L+   ++LV+    + +A + D   + +  S     V                 
Sbjct: 1279 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1338

Query: 115  ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                    D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 1339 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1398

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1399 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1454

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1455 SAAARRALRSLK 1466



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 852 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 909

Query: 79  VSAETCSQVARELD 92
           VS     ++ ++  
Sbjct: 910 VSNCNLYRLGKKKG 923


>gi|22830885|dbj|BAC15765.1| double-strand-specific ribonuclease MDCR [Mus musculus]
          Length = 1906

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1650 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1709

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114
                G L+   ++LV+    + +A + D   + +  S     V                 
Sbjct: 1710 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1769

Query: 115  ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                    D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 1770 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1829

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1830 SANVPRSPVRELLEMEPETAEFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1885

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1886 SAAARRALRSLK 1897



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1283 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1340

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1341 VSNCNLYRLGKKKG 1354


>gi|71083743|ref|YP_266463.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
 gi|91763221|ref|ZP_01265185.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
 gi|90101634|sp|Q4FLS9|RNC_PELUB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71062856|gb|AAZ21859.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
 gi|91717634|gb|EAS84285.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
          Length = 222

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 112/205 (54%), Gaps = 3/205 (1%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           F+++ +  K+LTH S       + E++EFLGDR+LGL+I+  L   +   KEG L  +F 
Sbjct: 16  FSDQKIFIKSLTHKSFDSIN--NNEKIEFLGDRVLGLIIAKKLLELYPDEKEGVLDKKFA 73

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           SLV+ + C ++A++++L  +I    + +         I AD +E+LI A+YLD G+    
Sbjct: 74  SLVNKKKCLEIAKKIELEKYIL-VLNPKNKKIEIEDKIVADCLEALIGAIYLDKGLNFTE 132

Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            F+   W +    S   + DAKT+LQE++   F V P YK+   +GP H P F V V++ 
Sbjct: 133 RFILNLWSEHITASVITQIDAKTKLQEYSLKIFKVLPIYKLISNTGPRHKPLFKVAVKLK 192

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLK 221
                     SK+ AEQ AA+  L+
Sbjct: 193 NTKFFTAEGTSKKDAEQNAASLCLQ 217


>gi|221194650|ref|ZP_03567707.1| ribonuclease III [Atopobium rimae ATCC 49626]
 gi|221185554|gb|EEE17944.1| ribonuclease III [Atopobium rimae ATCC 49626]
          Length = 243

 Score =  115 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 79/213 (37%), Positives = 99/213 (46%), Gaps = 4/213 (1%)

Query: 1   MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57
           M    R    EK   + F  R L+E ALTH S         SYERLEFLGD ILG +++T
Sbjct: 1   MKTYERIRAAEKICNHVFKRRDLIEAALTHPSAVEDKPVSASYERLEFLGDSILGAIVAT 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  +    EGEL+    SLVS  T S VA  L +   I      R      M S   +
Sbjct: 61  DLFERYPEMDEGELTRLKISLVSGHTLSLVAEALGIGPLIITGVSERGTGGRGMRSALEN 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYK 176
           V ES++ ALYLD G E    FV +        +  +     K+ LQE   A    TPEY+
Sbjct: 121 VYESIVGALYLDAGYEPTHEFVIRTLAPHISPALAERSVSPKSRLQEAVQANGKSTPEYE 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +   SGP H P F  VV + G    +G   SK+
Sbjct: 181 LVSESGPAHTPTFISVVSVDGCKVGRGQGHSKK 213


>gi|189465040|ref|ZP_03013825.1| hypothetical protein BACINT_01384 [Bacteroides intestinalis DSM
           17393]
 gi|189437314|gb|EDV06299.1| hypothetical protein BACINT_01384 [Bacteroides intestinalis DSM
           17393]
          Length = 291

 Score =  115 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 5/227 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57
               Y    K +G+   N  L ++AL H S S         + ERLEFLGD IL  ++  
Sbjct: 16  DKESYLCFYKILGFYPRNIQLYQQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGD 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +++ HF+  +EG L+   + +V  ET +++A E+ L   ++ S+           +    
Sbjct: 76  IVYKHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSARSSSHNSYMYGNAFEA 135

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            + ++          +               K  +   + K++L EW+           +
Sbjct: 136 FIGAIYLDQGY-KRCKRFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQKSKVEVSFELI 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                 D++P F   + I G+   +G   SK+ ++Q AA   LK+  
Sbjct: 195 EQFLDEDYNPMFHTEIRIEGIPAGKGTGYSKKESQQNAAQAALKKIK 241


>gi|254881153|ref|ZP_05253863.1| ribonuclease III [Bacteroides sp. 4_3_47FAA]
 gi|294777572|ref|ZP_06743023.1| ribonuclease III [Bacteroides vulgatus PC510]
 gi|254833946|gb|EET14255.1| ribonuclease III [Bacteroides sp. 4_3_47FAA]
 gi|294448640|gb|EFG17189.1| ribonuclease III [Bacteroides vulgatus PC510]
          Length = 308

 Score =  115 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 5/227 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57
               Y    K +G+   + S+ E+AL H S+S         + ERLEFLGD IL  +++ 
Sbjct: 16  DRESYLRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVAD 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +++  F+  +EG L+   + +V  ET +++A E+ L   I+ ++           +    
Sbjct: 76  IVYKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTARQSSHNSYMCGNAFEA 135

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           +V ++          +               K  +   + K++L EW+           +
Sbjct: 136 LVGAIYLDRGYR-ACKYFMEHRIIGPYINLEKISRKEVNFKSKLIEWSQKNRFEVTFELI 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           T      ++P F   V + G++  +G   SK+ ++Q+AA   L +  
Sbjct: 195 TQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGKIK 241


>gi|150003618|ref|YP_001298362.1| putative ribonuclease III [Bacteroides vulgatus ATCC 8482]
 gi|189043292|sp|A6KZ76|RNC_BACV8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|149932042|gb|ABR38740.1| putative ribonuclease III [Bacteroides vulgatus ATCC 8482]
          Length = 308

 Score =  115 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 5/227 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57
               Y    K +G+   + S+ E+AL H S+S         + ERLEFLGD IL  +++ 
Sbjct: 16  DRESYLRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVAD 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +++  F+  +EG L+   + +V  ET +++A E+ L   I+ ++           +    
Sbjct: 76  IVYKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTARQSSHNSYMCGNAFEA 135

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           +V ++          +               K  +   + K++L EW+           +
Sbjct: 136 LVGAIYLDRGYR-ACKYFMEHRIIGPYINLEKISRKEVNFKSKLIEWSQKNRFEVTFELI 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           T      ++P F   V + G++  +G   SK+ ++Q+AA   L +  
Sbjct: 195 TQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGKIK 241


>gi|283457874|ref|YP_003362474.1| dsRNA-specific ribonuclease [Rothia mucilaginosa DY-18]
 gi|283133889|dbj|BAI64654.1| dsRNA-specific ribonuclease [Rothia mucilaginosa DY-18]
          Length = 229

 Score =  115 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 104/225 (46%), Gaps = 6/225 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
           ++    L KR+G    +      +LTH S +      E  ERLEFLGD +L L I+  ++
Sbjct: 6   SVDTRELRKRLGVDI-DAETFLLSLTHRSYAFENPGVEHNERLEFLGDSVLSLAIAEEVY 64

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EGEL    + +VS    ++VAR+LDL  +I +         +   SI AD +E
Sbjct: 65  RRYPDLPEGELVKLHHVVVSTVALAKVARDLDLGRYILLGKGEIHTGGADKDSILADTME 124

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++    YL+ G E A   V +         K     RD KTEL   A A+      Y+VT
Sbjct: 125 AIFGLTYLECGREAARDLVLRLIAPLLDDEKVLNSGRDWKTELLNLATARGWGDVRYEVT 184

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GPDH   +T V  ++      G+  SK+ AE++AA +  +  
Sbjct: 185 G-EGPDHARVYTAVAIVANQQAGTGVGPSKKEAERLAAEQAYRVL 228


>gi|226305918|ref|YP_002765878.1| ribonuclease III [Rhodococcus erythropolis PR4]
 gi|226185035|dbj|BAH33139.1| probable ribonuclease III [Rhodococcus erythropolis PR4]
          Length = 257

 Score =  115 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 93/225 (41%), Gaps = 7/225 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
            +  L   +G       LL  ALTH S ++      + ERLEFLGD +LG+ ++  L+  
Sbjct: 15  NHDKLLAAVGVDIE-PGLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTENLYLS 73

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---RKDVCSFMTSIQADVV 119
                EG+L+    S+V+    ++VAR L                        SI AD +
Sbjct: 74  HPDKSEGDLAKIRASVVNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADGM 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVT 178
           ES++ A++L  GI+ A   V   +     ++             +   A+ G        
Sbjct: 134 ESILGAIHLQHGIDTARRVVLDLFDDLLTRAPLLGAGLDWKTSLQELTAEHGAGVPVYEI 193

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +GPDHD  FT  V IS      G+  SK+ AEQ AA+   K  
Sbjct: 194 TATGPDHDKEFTATVLISDKPLGVGVGRSKKEAEQKAASSAWKTM 238


>gi|75676109|ref|YP_318530.1| ribonuclease III [Nitrobacter winogradskyi Nb-255]
 gi|90101631|sp|Q3SRB3|RNC_NITWN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|74420979|gb|ABA05178.1| RNAse III [Nitrobacter winogradskyi Nb-255]
          Length = 266

 Score =  115 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 88/202 (43%), Positives = 122/202 (60%), Gaps = 3/202 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
           + +E+R+G+ FA+ SLL  A TH S   S +   +SY+RLEFLGD +LGL++S +L+  F
Sbjct: 44  AAIEQRLGHTFADISLLTTAFTHVSALKSSRGRCDSYQRLEFLGDHVLGLVVSDMLYRAF 103

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS R   LV  ETC  VA+ LDL   +++ +           S+  D+ E++I
Sbjct: 104 PKADEGELSKRLADLVRKETCIDVAKSLDLQEGVKLGAVGAGAGARLRRSVLGDICEAVI 163

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG   A  FV++ W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP
Sbjct: 164 GAVYLDGGYAAAAAFVERNWLERMRKPVRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 223

Query: 184 DHDPRFTVVVEISGLAPAQGMD 205
            HDPRF V VE+ GL  ++G+ 
Sbjct: 224 HHDPRFRVAVELPGLESSEGIG 245


>gi|193787170|dbj|BAG52376.1| unnamed protein product [Homo sapiens]
          Length = 820

 Score =  115 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 564 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 623

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
               G L+   ++LV+    + +A + D   +                            
Sbjct: 624 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 683

Query: 98  -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 684 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 743

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 744 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 799

Query: 213 QVAAAEVLKREG 224
             AA   L+   
Sbjct: 800 SAAARRALRSLK 811



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%)

Query: 13  IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 181 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 238

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS   +  VS     ++ ++  L                            +      
Sbjct: 239 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 291

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E      D       L       D + E   W   K     E         +H   
Sbjct: 292 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 349

Query: 189 FTVVVEISGLAPAQG 203
                 I  +    G
Sbjct: 350 -----FIDNMLMGSG 359


>gi|298387131|ref|ZP_06996685.1| ribonuclease 3 [Bacteroides sp. 1_1_14]
 gi|298260281|gb|EFI03151.1| ribonuclease 3 [Bacteroides sp. 1_1_14]
          Length = 324

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 90/218 (41%), Gaps = 5/218 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + +G+   N  + E+AL H S S         + ERLEFLGD IL  ++  +++  F+
Sbjct: 36  FYRILGFYPHNIQIYEQALLHKSSSVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 95

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   I+ S+           +     + ++  
Sbjct: 96  GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHNSYMYGNAFEAFIGAIYL 155

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
               +   +     +   +      S K     K++L EW+           +      D
Sbjct: 156 DQGYERCKQFMEQRIINRYIDLDKISRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDHD 214

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 215 SNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252


>gi|284054412|ref|ZP_06384622.1| ribonuclease III [Arthrospira platensis str. Paraca]
          Length = 394

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 24/237 (10%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61
            S L K+I   F N  LL  ALTHSS  + +    +   E LEFLGD +L  +    L++
Sbjct: 165 LSKLLKKI--PFQNVDLLNHALTHSSYLYEHPKEVKRDNELLEFLGDSVLNFISGEYLYH 222

Query: 62  HFDSA-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            + S   EG+L+   ++LV  +  ++ A +L L  +IR+         +   S+ ++  E
Sbjct: 223 KYKSVGNEGDLTKLRSALVENKQLAKFAEKLALQQYIRLGK-----GVALNPSLLSNTFE 277

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL---------QEWAHAKFGV 171
           ++I A +LD G++    F+   +     +     +    ++         +        +
Sbjct: 278 AMIGACFLDSGMKKVQEFLQPLFDSVIAEITSLSQGNSGKVAADSKNRLQEWVQKNIGPI 337

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK---REGI 225
           TPEY+     G DH  +FTV V + G    QG   SK+ A + AA + L    + G+
Sbjct: 338 TPEYETIKEEGADHQKQFTVQVMVEGKVYGQGKGLSKKEASKKAAEKALDQIYKLGL 394


>gi|296215831|ref|XP_002754304.1| PREDICTED: endoribonuclease Dicer isoform 1 [Callithrix jacchus]
 gi|296215833|ref|XP_002754305.1| PREDICTED: endoribonuclease Dicer isoform 2 [Callithrix jacchus]
 gi|296215835|ref|XP_002754306.1| PREDICTED: endoribonuclease Dicer isoform 3 [Callithrix jacchus]
          Length = 1922

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1901

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1902 SAAARRALRSLK 1913



 Score = 48.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 58/195 (29%), Gaps = 20/195 (10%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
            G LS   +  VS     ++ ++  L                            +      
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1393

Query: 129  DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                E      D       L       + + E   W   K     E         +H   
Sbjct: 1394 TDKWEKDEMTKDCMLANGKLDEDYEEEEDEEESLMWRAPKEEADCEDDFLEYD-QEHIR- 1451

Query: 189  FTVVVEISGLAPAQG 203
                  I  +    G
Sbjct: 1452 -----FIDNMLMGSG 1461


>gi|109084784|ref|XP_001100868.1| PREDICTED: endoribonuclease Dicer [Macaca mulatta]
          Length = 1920

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1664 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1723

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1724 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1783

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1784 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1843

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1844 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1899

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1900 SAAARRALRSLK 1911



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1281 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1338

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
            G LS   +  VS     ++ ++  L                            +      
Sbjct: 1339 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1391

Query: 129  DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                E      D       L       D + E   W   K     E         +H   
Sbjct: 1392 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1449

Query: 189  FTVVVEISGLAPAQG 203
                  I  +    G
Sbjct: 1450 -----FIDNMLMGSG 1459


>gi|29348766|ref|NP_812269.1| ribonuclease III [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568891|ref|ZP_04846301.1| ribonuclease III [Bacteroides sp. 1_1_6]
 gi|29340672|gb|AAO78463.1| ribonuclease III [Bacteroides thetaiotaomicron VPI-5482]
 gi|251840910|gb|EES68991.1| ribonuclease III [Bacteroides sp. 1_1_6]
          Length = 324

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 5/218 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + +G+   N  + E+AL H S +         + ERLEFLGD IL  ++  +++  F+
Sbjct: 36  FYRILGFYPHNIQIYEQALLHKSSAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 95

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   I+ S+           +     + ++  
Sbjct: 96  GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHNSYMYGNAFEAFIGAIYL 155

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
               +   +     +   +      S K     K++L EW+           +      D
Sbjct: 156 DQGYERCKQFMEQRIINRYIDLDKISRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDHD 214

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 215 SNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252


>gi|332223646|ref|XP_003260983.1| PREDICTED: endoribonuclease Dicer isoform 1 [Nomascus leucogenys]
 gi|332223648|ref|XP_003260984.1| PREDICTED: endoribonuclease Dicer isoform 2 [Nomascus leucogenys]
          Length = 1922

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1901

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1902 SAAARRALRSLK 1913



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 54/185 (29%), Gaps = 16/185 (8%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350

Query: 79   VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
            VS     ++ ++  L                            +          E     
Sbjct: 1351 VSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSNTDKWEKDEMT 1403

Query: 139  VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
             D       L       D + E   W   K     E         +H         I  +
Sbjct: 1404 KDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR------FIDNM 1456

Query: 199  APAQG 203
                G
Sbjct: 1457 LMGSG 1461


>gi|297695799|ref|XP_002825114.1| PREDICTED: endoribonuclease Dicer-like isoform 1 [Pongo abelii]
 gi|297695801|ref|XP_002825115.1| PREDICTED: endoribonuclease Dicer-like isoform 2 [Pongo abelii]
 gi|297695803|ref|XP_002825116.1| PREDICTED: endoribonuclease Dicer-like isoform 3 [Pongo abelii]
          Length = 1922

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1901

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1902 SAAARRALRSLK 1913



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
            G LS   +  VS     ++ ++  L                            +      
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1393

Query: 129  DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                E      D       L       D + E   W   K     E         +H   
Sbjct: 1394 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1451

Query: 189  FTVVVEISGLAPAQG 203
                  I  +    G
Sbjct: 1452 -----FIDNMLMGSG 1461


>gi|119602001|gb|EAW81595.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Homo sapiens]
          Length = 1923

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1847 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1902

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1903 SAAARRALRSLK 1914



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1284 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1341

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
            G LS   +  VS     ++ ++  L                            +      
Sbjct: 1342 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1394

Query: 129  DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                E      D       L       D + E   W   K     E         +H   
Sbjct: 1395 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1452

Query: 189  FTVVVEISGLAPAQG 203
                  I  +    G
Sbjct: 1453 -----FIDNMLMGSG 1462


>gi|114654613|ref|XP_001154199.1| PREDICTED: dicer1 isoform 3 [Pan troglodytes]
 gi|114654615|ref|XP_001154247.1| PREDICTED: dicer1 isoform 4 [Pan troglodytes]
 gi|114654617|ref|XP_001154306.1| PREDICTED: dicer1 isoform 5 [Pan troglodytes]
 gi|114654619|ref|XP_001154369.1| PREDICTED: endoribonuclease Dicer isoform 6 [Pan troglodytes]
          Length = 1922

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1901

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1902 SAAARRALRSLK 1913



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
            G LS   +  VS     ++ ++  L                            +      
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1393

Query: 129  DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                E      D       L       D + E   W   K     E         +H   
Sbjct: 1394 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1451

Query: 189  FTVVVEISGLAPAQG 203
                  I  +    G
Sbjct: 1452 -----FIDNMLMGSG 1461


>gi|114654611|ref|XP_001154010.1| PREDICTED: dicer1 isoform 1 [Pan troglodytes]
          Length = 1930

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1901

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1902 SAAARRALRSLK 1913



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
            G LS   +  VS     ++ ++  L                            +      
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1393

Query: 129  DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                E      D       L       D + E   W   K     E         +H   
Sbjct: 1394 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1451

Query: 189  FTVVVEISGLAPAQG 203
                  I  +    G
Sbjct: 1452 -----FIDNMLMGSG 1461


>gi|56459918|ref|YP_155199.1| RNase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR]
 gi|81363596|sp|Q5R106|RNC_IDILO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56178928|gb|AAV81650.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR]
          Length = 229

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 68/208 (32%), Positives = 110/208 (52%), Gaps = 6/208 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + LEK +GY+F  + LL +A+TH S S ++    ERLEFLGD ILGL+I+  L+  F  
Sbjct: 8   LTELEKIVGYSFEQQGLLHQAMTHRSASSTH---NERLEFLGDSILGLVIAEALYQKFPK 64

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    ++V   + +++ +++ L  F+ +     K       SI AD VE++I A
Sbjct: 65  VAEGDLSRMRAAIVCGRSLAKLGKKMGLGDFLSLGQGELKSGGYRRESILADAVEAIIGA 124

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD  ++     +  +++ +         ++D KT LQE   A+    PEY V    G 
Sbjct: 125 IYLDSDMDTIRQVILNWFEPQLTLIEPGTSQKDPKTRLQELLQARQKPLPEYDVVATQGQ 184

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRA 210
            H+ +FTV   + G+  P +G   S+R 
Sbjct: 185 AHNQQFTVNCSVEGIESPFKGTGTSRRK 212


>gi|29294649|ref|NP_085124.2| endoribonuclease Dicer isoform 1 [Homo sapiens]
 gi|29294651|ref|NP_803187.1| endoribonuclease Dicer isoform 1 [Homo sapiens]
 gi|257051056|sp|Q9UPY3|DICER_HUMAN RecName: Full=Endoribonuclease Dicer; AltName: Full=Helicase with
            RNase motif; Short=Helicase MOI
 gi|20521696|dbj|BAA76772.2| KIAA0928 protein [Homo sapiens]
 gi|119602002|gb|EAW81596.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Homo sapiens]
 gi|152012889|gb|AAI50288.1| Dicer 1, ribonuclease type III [Homo sapiens]
 gi|307685563|dbj|BAJ20712.1| dicer 1, ribonuclease type III [synthetic construct]
          Length = 1922

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1901

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1902 SAAARRALRSLK 1913



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
            G LS   +  VS     ++ ++  L                            +      
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1393

Query: 129  DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                E      D       L       D + E   W   K     E         +H   
Sbjct: 1394 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1451

Query: 189  FTVVVEISGLAPAQG 203
                  I  +    G
Sbjct: 1452 -----FIDNMLMGSG 1461


>gi|21665773|emb|CAB38857.2| hypothetical helicase K12H4.8-like protein [Homo sapiens]
          Length = 1912

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1656 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1715

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1716 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1775

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1776 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1835

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1836 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1891

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1892 SAAARRALRSLK 1903



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1273 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1330

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
            G LS   +  VS     ++ ++  L                            +      
Sbjct: 1331 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1383

Query: 129  DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                E      D       L       D + E   W   K     E         +H   
Sbjct: 1384 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1441

Query: 189  FTVVVEISGLAPAQG 203
                  I  +    G
Sbjct: 1442 -----FIDNMLMGSG 1451


>gi|5019620|dbj|BAA78691.1| helicase-MOI [Homo sapiens]
          Length = 1924

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1668 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1727

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1728 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1787

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1788 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1847

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1848 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1903

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1904 SAAARRALRSLK 1915



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1285 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1342

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
            G LS   +  VS     ++ ++  L                            +      
Sbjct: 1343 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1395

Query: 129  DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                E      D       L       D + E   W   K     E         +H   
Sbjct: 1396 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1453

Query: 189  FTVVVEISGLAPAQG 203
                  I  +    G
Sbjct: 1454 -----FIDNMLMGSG 1463


>gi|329964465|ref|ZP_08301519.1| ribonuclease III [Bacteroides fluxus YIT 12057]
 gi|328524865|gb|EGF51917.1| ribonuclease III [Bacteroides fluxus YIT 12057]
          Length = 294

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             K +G+   N  + ++AL H S S         + ERLEFLGD IL  ++  +++ HFD
Sbjct: 23  FYKILGFFPHNIQIYQQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFD 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   ++ S+           +     + ++  
Sbjct: 83  GRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSTRSSSHNSYMYGNAFEAFIGAIYL 142

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
               D   +     + K +      S K     K++L EW+           +      D
Sbjct: 143 DQGYDRCKQFMEEKIFKNYIDLDKMSRKEVNF-KSKLIEWSQKNKMEVSFELIEQLLDED 201

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           ++P F   V I G++   G   SK+ ++Q AA   LK+  
Sbjct: 202 YNPMFHTEVRIEGISAGTGTGYSKKESQQNAARMTLKKIK 241


>gi|314923852|gb|EFS87683.1| ribonuclease III [Propionibacterium acnes HL001PA1]
 gi|314966091|gb|EFT10190.1| ribonuclease III [Propionibacterium acnes HL082PA2]
 gi|314981862|gb|EFT25955.1| ribonuclease III [Propionibacterium acnes HL110PA3]
 gi|315090788|gb|EFT62764.1| ribonuclease III [Propionibacterium acnes HL110PA4]
 gi|315094941|gb|EFT66917.1| ribonuclease III [Propionibacterium acnes HL060PA1]
 gi|327328032|gb|EGE69801.1| ribonuclease III [Propionibacterium acnes HL103PA1]
          Length = 265

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 38  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  ++AR+L +   I++     +      TSI AD  E+L+
Sbjct: 97  PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 216 GPDHNRRYCARANVDGRLYAAYTGHNKKEAEQGAARRA 253


>gi|282854597|ref|ZP_06263932.1| ribonuclease III [Propionibacterium acnes J139]
 gi|282582179|gb|EFB87561.1| ribonuclease III [Propionibacterium acnes J139]
          Length = 246

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 19  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 77

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  ++AR+L +   I++     +      TSI AD  E+L+
Sbjct: 78  PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 137

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 138 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 196

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 197 GPDHNRRYCARANVDGRLYAAYTGHNKKEAEQGAARRA 234


>gi|213419257|ref|ZP_03352323.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 213

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 5/197 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 20  MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 77  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 136

Query: 121 SLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+            +   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196

Query: 179 FRSGPDHDPRFTVVVEI 195
              G  HD  FT+  ++
Sbjct: 197 QVRGEAHDQEFTIHCQV 213


>gi|149371093|ref|ZP_01890688.1| putative ribonuclease III [unidentified eubacterium SCB49]
 gi|149355879|gb|EDM44437.1| putative ribonuclease III [unidentified eubacterium SCB49]
          Length = 247

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 95/219 (43%), Gaps = 6/219 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           ++K +G+   + ++ E+A TH S +      + ++YERLEFLGD +L  +I+  L+    
Sbjct: 22  IKKLLGFKPKDITIYEEAFTHRSTNEKTREGHAQNYERLEFLGDAMLSAVIAAHLYKKVP 81

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+   + +VS E  +++ R+L+L   +R +  +++   +   ++   +V ++  
Sbjct: 82  GGNEGYLTKMRSKVVSREHLNELGRDLELIKHLRTTIPIKQFGGNVHGNVFESLVGAIYL 141

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
                   +     V K +       GK        ++           ++ V   +G D
Sbjct: 142 DRGYRYCEKFINKRVIKPYVDIKKLEGKVISYKSLFIEWCQK--HKSQFKFAVYEDTGND 199

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               F V + +  +   +    SK+ AE++AA     + 
Sbjct: 200 KLKHFAVKLHLDNVVVGKARATSKKKAEEMAAKRAYYKL 238


>gi|328723672|ref|XP_003247913.1| PREDICTED: ribonuclease 3-like [Acyrthosiphon pisum]
          Length = 1273

 Score =  115 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 6/223 (2%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E  IG  F +  LL +A T  S   ++    S +RLEFLGD +L L+ S  L+ +
Sbjct: 964  KLTNFEDSIGIKFTHIRLLARAFTDRSVGFTNLTLGSNQRLEFLGDTVLQLIASDYLYKY 1023

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T S V  +L + S+   ++   +        +    + +L
Sbjct: 1024 FPEHHEGHLSLLRSSLVNNRTQSVVCDDLGMVSYALYANPKAELKTKDRADLLEAFLGAL 1083

Query: 123  IA----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
                                +  +  ++     K +                  P YKV 
Sbjct: 1084 YIDKGLTFCQAFCNVCFFPRLHDFILKQDWNDPKSKLQQCCLTLRSVDGGEPDIPVYKVI 1143

Query: 179  FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               GP +  ++TV V    +  +Q    S + AE  AA   L+
Sbjct: 1144 ECMGPTNGRKYTVAVYFKSVRLSQATGHSIQRAEMNAANSALE 1186



 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 75/210 (35%), Gaps = 55/210 (26%)

Query: 6   YSTLEKRIGYAFANRSLLEKA--------------------LT--------------H-- 29
              LE  I Y F N+ LL+ A                    LT              H  
Sbjct: 733 LEYLEDTIEYKFKNKYLLQLALTHPSYRENFGTNPDHARNTLTNCGIRQPEYGDRRIHYM 792

Query: 30  -------------------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
                               S   S     ERLEFLGD ++  + S  LFN F   +EG 
Sbjct: 793 NTRKRGINTLINIMSRFGKKSEMESNIMHNERLEFLGDAVVEFVSSIHLFNMFPDIEEGG 852

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+    ++V  +  + +A+ L L  F+  +        S +    A+  E+L+ AL+LDG
Sbjct: 853 LATFRAAIVQNQHLAVLAKTLKLDDFMLYAHGSDLCHDSELKHAMANCFEALMGALFLDG 912

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
           GIEVA     K + + + +      +    
Sbjct: 913 GIEVADRVFGKTFYRDSPEYLDIWVNYPRH 942


>gi|257051055|sp|A0MQH0|DICER_CRIGR RecName: Full=Endoribonuclease Dicer
 gi|116831677|gb|ABK28790.1| DICER [Cricetulus griseus]
          Length = 1917

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1661 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1720

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1721 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1780

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1781 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1840

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1841 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1896

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1897 SAAARRALRSLK 1908



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1351 VSNCNLYRLGKKKG 1364


>gi|327259080|ref|XP_003214366.1| PREDICTED: endoribonuclease Dicer-like isoform 2 [Anolis
            carolinensis]
          Length = 1915

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y+F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1659 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1718

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1719 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1778

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1779 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWHVYYPMMRPLIEKF 1838

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1839 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1894

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1895 SAAARRALRSLK 1906



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1288 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1345

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1346 VSNCNLYRLGKKKG 1359


>gi|327259078|ref|XP_003214365.1| PREDICTED: endoribonuclease Dicer-like isoform 1 [Anolis
            carolinensis]
          Length = 1918

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y+F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1662 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1721

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1722 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1781

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1782 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWHVYYPMMRPLIEKF 1841

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1842 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1897

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1898 SAAARRALRSLK 1909



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1291 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1348

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1349 VSNCNLYRLGKKKG 1362


>gi|221068688|ref|ZP_03544793.1| Ribonuclease III [Comamonas testosteroni KF-1]
 gi|264677118|ref|YP_003277024.1| ribonuclease III [Comamonas testosteroni CNB-2]
 gi|299530659|ref|ZP_07044074.1| ribonuclease III [Comamonas testosteroni S44]
 gi|220713711|gb|EED69079.1| Ribonuclease III [Comamonas testosteroni KF-1]
 gi|262207630|gb|ACY31728.1| ribonuclease III [Comamonas testosteroni CNB-2]
 gi|298721175|gb|EFI62117.1| ribonuclease III [Comamonas testosteroni S44]
          Length = 227

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 104/211 (49%), Gaps = 6/211 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L++R+ + FAN +LL++A+TH S S    ++ ERLEFLGD +L L IS+LL+    S
Sbjct: 5   LVALQQRLQHQFANPALLQRAITHRSFS---ADNNERLEFLGDSVLSLAISSLLYAKLAS 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    +LV   T  ++A +L L   +R+     K       SI AD VE+LI A
Sbjct: 62  MPEGDLSRVRANLVKEGTLHKIALKLQLPDLLRLGEGEAKSGGKQRPSILADAVEALIGA 121

Query: 126 LYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G       V   ++            +D KT LQE    K    P+Y V   SG 
Sbjct: 122 VYLDAGFAAGEKVVHHLFEGVDINPHMRAADKDPKTALQELLQGKRMKLPQYHVVEISGA 181

Query: 184 DHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213
            H   F V   I+     AQG   S+R  EQ
Sbjct: 182 AHKQTFKVECTIAEWNISAQGSGASRRMGEQ 212


>gi|332020119|gb|EGI60563.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior]
          Length = 1979

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 87/253 (34%), Gaps = 29/253 (11%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLL 59
            M    Y  LEK IGY F + S L +A TH+S   +   + Y+RLEFLGD +L  LI+  L
Sbjct: 1716 MMLDGYEELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHL 1775

Query: 60   FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
            +        G L+   ++LV+    + +A       + R  S     V +    IQ +  
Sbjct: 1776 YEDSRQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENG 1835

Query: 120  ESLIAALYLDGGIEVAGTFVDKYWK------------------------QRALKSGKFRR 155
             S+    YL G  E       +  K                             +     
Sbjct: 1836 HSISEEYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSE 1895

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAA 211
              +            +      T + G         R  V V++ G    +G+  + R A
Sbjct: 1896 IEQFSTNVPKSPIRELLELEPETAKFGRPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIA 1955

Query: 212  EQVAAAEVLKREG 224
            +  AA   LK+  
Sbjct: 1956 KCTAAKCALKKLK 1968



 Score = 43.4 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
            G++  + SL+ +ALT S+ +     + ERLE +GD  L   I+T L+  +D+  EG+LS 
Sbjct: 1437 GHSGPSPSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSH 1494

Query: 74   RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              +  VS     ++ R+  L   +  +     D            +E
Sbjct: 1495 LRSKQVSNLNLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELE 1541


>gi|327382635|gb|AEA54111.1| ribonuclease III [Lactobacillus casei LC2W]
 gi|327385829|gb|AEA57303.1| ribonuclease III [Lactobacillus casei BD-II]
          Length = 231

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 91/205 (44%), Gaps = 5/205 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
            S L +R G  F + SLL++A THSS  + ++E      ERLEFLGD +L L +S  L+ 
Sbjct: 7   VSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYR 66

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+L+    + V     S  ++E     +I++     K       ++  D+ E+
Sbjct: 67  KFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARKRLTLLEDLFEA 126

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
              ALYLD G +    F  +    +         +D KT LQE       V   Y +   
Sbjct: 127 FNGALYLDQGRDANIRFAQQIIFPKIDAGEFSDDQDHKTALQEVLQQNGDVAIVYHLLDE 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMD 205
            GP H+ +F V VE+ G     G  
Sbjct: 187 QGPAHERQFHVDVEVDGRVLGTGFG 211


>gi|255264048|ref|ZP_05343390.1| ribonuclease III [Thalassiobium sp. R2A62]
 gi|255106383|gb|EET49057.1| ribonuclease III [Thalassiobium sp. R2A62]
          Length = 226

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 76/205 (37%), Positives = 112/205 (54%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
                E R+G+ F   +LL +A+TH+S+S   ++  +RLEFLGDR+LGL+++  L     
Sbjct: 6   DLKAFEGRLGHRFETPALLVQAVTHASMSSPNRDDNQRLEFLGDRVLGLVMAEALLAADP 65

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG L+ R+N+LV  E C+ VARE+D+ + +++     K       ++  D +E++IA
Sbjct: 66  MAPEGILAPRYNALVRKEACADVAREVDVGAVLKLGRSEMKSGGRRKLALLGDAMEAVIA 125

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLD G E A   V + W  R        RDAKT LQEWA  +    P Y    R+GPD
Sbjct: 126 AVYLDAGFEAAREMVLRLWGTRIHTVKADARDAKTALQEWAQGRGEGPPNYTEVSRTGPD 185

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           H P F + V +      +    SKR
Sbjct: 186 HAPIFEIEVRLEAGQSYRAKAGSKR 210


>gi|291570878|dbj|BAI93150.1| ribonuclease III [Arthrospira platensis NIES-39]
          Length = 395

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 97/233 (41%), Gaps = 16/233 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61
            S L K+I   F N  LL  ALTHSS  + +    +   E LEFLGD +L  +    L++
Sbjct: 166 LSKLLKKI--PFQNVDLLNHALTHSSYLYEHPKEVKRDNELLEFLGDSVLNFISGEYLYH 223

Query: 62  HFDSA-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            + S   EG+L+   ++LV  +  ++ A +L L  +IR+   +     S +++    ++ 
Sbjct: 224 KYKSVGNEGDLTKLRSALVENKQLAKFAEKLALQQYIRLGKGV-ALNPSLLSNTFEAMIG 282

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV-----TPEY 175
           +      +    E      D    +    S         + +              TPEY
Sbjct: 283 ACFLDSGMKKVQEFLQPLFDSVIAEITSLSQGNSGKVAADSKNRLQEWVQKNIGPITPEY 342

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK---REGI 225
           +     G DH  +FTV V + G    QG   SK+ A + AA + L    + G+
Sbjct: 343 ETIKEEGADHQKQFTVQVMVEGKVYGQGKGLSKKEASKKAAEKALDQIYKLGL 395


>gi|325915827|ref|ZP_08178126.1| RNAse III [Xanthomonas vesicatoria ATCC 35937]
 gi|325537948|gb|EGD09645.1| RNAse III [Xanthomonas vesicatoria ATCC 35937]
          Length = 226

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 80/218 (36%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+  LL +AL H S         ERLEFLGD I+ LLI+  L+  +  A EG L+
Sbjct: 12  IGHAFADPGLLARALRHRSAG---TPHNERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEPSLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           V   +   +A A+G   S+R AEQ AAA V+ +  + T
Sbjct: 189 VACILEQPIARAEGQGTSRRLAEQQAAATVIAQLDVNT 226


>gi|285019301|ref|YP_003377012.1| ribonuclease III protein [Xanthomonas albilineans GPE PC73]
 gi|283474519|emb|CBA17020.1| probable ribonuclease III protein [Xanthomonas albilineans]
          Length = 227

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 78/216 (36%), Positives = 114/216 (52%), Gaps = 6/216 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
            RIG+ F    LL +ALTH S         ERLEFLGD I+ LLI+  L+  +  A EG 
Sbjct: 11  DRIGHRFTEPQLLAQALTHRSAG---APHNERLEFLGDSIVNLLIAEALYQRWPKADEGA 67

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+     LV   + + + R+L+L   + +     K       SI AD VE+++AA+YLD 
Sbjct: 68  LTRARAELVREASLAAIGRQLELGDRLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDA 127

Query: 131 GIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           G E     +  +++    AL  GK  +DAKT LQEW  A+    P Y++   +G +H  R
Sbjct: 128 GFETCRATILPWFESGLAALPVGKPEKDAKTRLQEWLQARQRALPAYELISETGDEHAKR 187

Query: 189 FTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F V   ++  +  A+G   S+R AEQ AAA V+++ 
Sbjct: 188 FRVRCALTEPVLVAEGEGTSRRLAEQQAAAAVIEQL 223


>gi|212692274|ref|ZP_03300402.1| hypothetical protein BACDOR_01770 [Bacteroides dorei DSM 17855]
 gi|237726085|ref|ZP_04556566.1| ribonuclease 3 [Bacteroides sp. D4]
 gi|212665151|gb|EEB25723.1| hypothetical protein BACDOR_01770 [Bacteroides dorei DSM 17855]
 gi|229435893|gb|EEO45970.1| ribonuclease 3 [Bacteroides dorei 5_1_36/D4]
          Length = 308

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 5/227 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57
               Y    K +G+   + S+ E+AL H S+S         + ERLEFLGD IL  +++ 
Sbjct: 16  DRESYFRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVAD 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +++  F+  +EG L+   + +V  ET +++A E+ L   I+ ++           +    
Sbjct: 76  IVYKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTARQSSHNSYMCGNAFEA 135

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           +V ++          +               K  +   + K++L EW+           +
Sbjct: 136 LVGAIYLDRGYR-ACKYFMEHRIIGSYINLEKISRKEVNFKSKLIEWSQKNRFEVTFELI 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           T      ++P F   V + G++  +G   SK+ ++Q+AA   L +  
Sbjct: 195 TQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGKIK 241


>gi|265752863|ref|ZP_06088432.1| ribonuclease 3 [Bacteroides sp. 3_1_33FAA]
 gi|263236049|gb|EEZ21544.1| ribonuclease 3 [Bacteroides sp. 3_1_33FAA]
          Length = 308

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 5/227 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57
               Y    K +G+   + S+ E+AL H S+S         + ERLEFLGD IL  +++ 
Sbjct: 16  DRESYFRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVAD 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +++  F+  +EG L+   + +V  ET +++A E+ L   I+ ++           +    
Sbjct: 76  IVYKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTARQSSHNSYMCGNAFEA 135

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           +V ++          +               K  +   + K++L EW+           +
Sbjct: 136 LVGAIYLDRGYR-ACKYFMEHRIIGSYINLEKISRKEVNFKSKLIEWSQKNRFEVTFELI 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           T      ++P F   V + G++  +G   SK+ ++Q+AA   L +  
Sbjct: 195 TQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGKIK 241


>gi|168177333|pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
           Dicer
          Length = 265

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 15  FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPR 74

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---------- 114
               G L+   ++LV+    + +A + D   + +  S     V                 
Sbjct: 75  QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 134

Query: 115 ----------------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                   D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 135 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 194

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 195 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 250

Query: 213 QVAAAEVLKREG 224
             AA   L+   
Sbjct: 251 SAAARRALRSLK 262


>gi|281339672|gb|EFB15256.1| hypothetical protein PANDA_009266 [Ailuropoda melanoleuca]
          Length = 1917

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 90/245 (36%), Gaps = 30/245 (12%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1668 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1727

Query: 65   SAKEGELSVRFNSLVSA---------ETCSQVARELDLASFIRVSSDLRKDVC------- 108
                G L+   ++LV+          +  S     +                        
Sbjct: 1728 QHSPGVLTDLRSALVNNTIFASLAYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRS 1787

Query: 109  ---------SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT 159
                       +     D+ ESL  A+Y+D G+ +   +   Y   R L         ++
Sbjct: 1788 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRS 1847

Query: 160  ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             ++E    +                +D +  V VE+ G    +G+  S R A+  AA   
Sbjct: 1848 PVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRA 1903

Query: 220  LKREG 224
            L+   
Sbjct: 1904 LRSLK 1908



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 54/185 (29%), Gaps = 16/185 (8%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1295 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1352

Query: 79   VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
            VS     ++ ++  L                            +          E     
Sbjct: 1353 VSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSNTDKWEKDEMT 1405

Query: 139  VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
             D       L       D + E   W   K     E         +H         I  +
Sbjct: 1406 KDCMLANGKLDEDFEEDDEEEEELTWRAPKEDADYEDDFLEYD-QEHIK------FIDNM 1458

Query: 199  APAQG 203
                G
Sbjct: 1459 LMGSG 1463


>gi|163733862|ref|ZP_02141304.1| ribonuclease III [Roseobacter litoralis Och 149]
 gi|161392973|gb|EDQ17300.1| ribonuclease III [Roseobacter litoralis Och 149]
          Length = 228

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 81/210 (38%), Positives = 122/210 (58%), Gaps = 1/210 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +      +KR+G+ F   SLL +A+TH+S+S + +   +R+EFLGDR+LGL+++  L
Sbjct: 1   MKLSAELKAFQKRLGHQFNQPSLLAQAVTHASMSTANRGDNQRMEFLGDRVLGLVMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
               + A EG+L+ RFN+LV  ETC+ VARE+DL + +R+             ++  D +
Sbjct: 61  LGLDNDATEGQLAPRFNALVRKETCADVAREIDLGAVLRLGRSEMLSGGRRKQALLGDAI 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+Y D G + A   + + W  R  +  +  RDAKT LQEWA A+    P Y+   
Sbjct: 121 EAVIAAVYQDAGFDAARALILRLWGDRVHEVEEDARDAKTALQEWAQARGLQPPHYEEVH 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           R GPDH P FT+ V++S     Q    SKR
Sbjct: 181 RKGPDHAPIFTISVQLSTGETDQATAGSKR 210


>gi|149636857|ref|XP_001510982.1| PREDICTED: similar to Dicer protein [Ornithorhynchus anatinus]
          Length = 1921

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E++I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1665 FENFERKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1784

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1900

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1901 SAAARRALRSLK 1912



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1352 VSNCNLYRLGKKKG 1365


>gi|116495089|ref|YP_806823.1| ribonuclease III [Lactobacillus casei ATCC 334]
 gi|191638593|ref|YP_001987759.1| ribonuclease III [Lactobacillus casei BL23]
 gi|227534896|ref|ZP_03964945.1| ribonuclease III [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|116105239|gb|ABJ70381.1| RNAse III [Lactobacillus casei ATCC 334]
 gi|190712895|emb|CAQ66901.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus casei
           BL23]
 gi|227187652|gb|EEI67719.1| ribonuclease III [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 231

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 91/205 (44%), Gaps = 5/205 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
            S L +R G  F + SLL++A THSS  + ++E      ERLEFLGD +L L +S  L+ 
Sbjct: 7   VSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYR 66

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+L+    + V     S  ++E     +I++     K       ++  D+ E+
Sbjct: 67  KFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARKRLTLLEDLFEA 126

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
              ALYLD G +    F  +    +         +D KT LQE       V   Y +   
Sbjct: 127 FNGALYLDQGRDANIRFAQQIIFPKIDAGEFSADQDHKTALQEVLQQNGDVAIVYHLLDE 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMD 205
            GP H+ +F V VE+ G     G  
Sbjct: 187 QGPAHERQFHVDVEVDGRVLGTGFG 211


>gi|54310187|ref|YP_131207.1| ribonuclease III [Photobacterium profundum SS9]
 gi|81615006|sp|Q6LMS2|RNC_PHOPR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|46914628|emb|CAG21405.1| putative ribonuclease III [Photobacterium profundum SS9]
          Length = 224

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 105/207 (50%), Gaps = 6/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L++R+GY F +  L+  +LTH S      +  ERLEFLGD IL  +I+  L++ F   
Sbjct: 6   NRLQRRLGYQFNSSELMTLSLTHRSA---NGKHNERLEFLGDSILSFVIADDLYHRFPHV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV  +T +++ RE +L  ++ +     K       SI AD VE++I A+
Sbjct: 63  DEGDMSRMRATLVRGKTLAELGREFELGDYLLLGPGELKSGGFRRDSILADCVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD   E     +  +++ R         ++D KT LQE    +    P Y VT   G  
Sbjct: 123 YLDSDTEQVRKVILSWYQSRLETIQPGINQKDPKTRLQECLQGRRLALPAYTVTKVHGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210
           H+  FTV  E++GL  P  G   S+R 
Sbjct: 183 HNQEFTVQCEVTGLDKPVIGKGSSRRK 209


>gi|229552452|ref|ZP_04441177.1| ribonuclease III [Lactobacillus rhamnosus LMS2-1]
 gi|229314189|gb|EEN80162.1| ribonuclease III [Lactobacillus rhamnosus LMS2-1]
          Length = 231

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 91/205 (44%), Gaps = 5/205 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
            S L +R G  F + SLL++A THSS  + ++E      ERLEFLGD +L L +S  L+ 
Sbjct: 7   VSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYR 66

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+L+    + V     S  ++E     +I++     K       ++  D+ E+
Sbjct: 67  KFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLEDLFEA 126

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
              ALYLD G E    F  +    +         +D KT LQE       V   Y +   
Sbjct: 127 FNGALYLDQGREANIKFTKQIIFPKIDAGEFSADQDHKTALQETLQQNGDVAIVYHLLDE 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMD 205
            GP H+ +F V VE+ G     G  
Sbjct: 187 KGPAHERQFHVDVEVEGRVLGTGFG 211


>gi|241061228|ref|XP_002408100.1| dicer-1, putative [Ixodes scapularis]
 gi|215492369|gb|EEC02010.1| dicer-1, putative [Ixodes scapularis]
          Length = 2050

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 94/251 (37%), Gaps = 36/251 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E RIGY F +R+ L +A TH+S   +   + Y+RLEFLGD +L  LI+  L++   
Sbjct: 1794 YDAFEARIGYRFRDRAYLLQAFTHASYHYNRLTDCYQRLEFLGDAVLDYLITRHLYDDPQ 1853

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-------------SSDLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +               +    D   + 
Sbjct: 1854 RHSPGTLTDLRSALVNNTFFASLAVKYDFHRYFKNVSPGLFAVIQRFVETKCHSDGFRYH 1913

Query: 112  TSIQ------------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                                   D+ ES+  A++LD  + +   +   Y   +       
Sbjct: 1914 EKYYLEEEECEEAEEVEVPKALGDIFESVAGAIFLDSNMSLDTVWRVYYAMMKPEIEYFS 1973

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
                K+ ++E    +       +         + +  + VE+ G     G+  +KR A+ 
Sbjct: 1974 THVPKSPIRELLELEPQTAKFERAEMTL----NGKVRIRVEVFGKGRFVGVGRNKRIAKC 2029

Query: 214  VAAAEVLKREG 224
             AA   L+   
Sbjct: 2030 TAAKRALRALK 2040



 Score = 40.3 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S+L +ALT S+ +     + ERLE +GD  L   ++  L+    S  EG+LS   +  +
Sbjct: 1550 PSILLQALTMSNANDGI--NLERLETVGDSFLKYAVTAHLYCTHPSVHEGKLSHLRSRQI 1607

Query: 80   SAETCSQ 86
            S     +
Sbjct: 1608 SNLNLYR 1614


>gi|90101612|sp|Q8A2E8|RNC_BACTN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 311

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 5/218 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + +G+   N  + E+AL H S +         + ERLEFLGD IL  ++  +++  F+
Sbjct: 23  FYRILGFYPHNIQIYEQALLHKSSAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKRFE 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   I+ S+           +     + ++  
Sbjct: 83  GKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYSTRSSSHNSYMYGNAFEAFIGAIYL 142

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
               +   +     +   +      S K     K++L EW+           +      D
Sbjct: 143 DQGYERCKQFMEQRIINRYIDLDKISRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDHD 201

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 202 SNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 239


>gi|92117774|ref|YP_577503.1| ribonuclease III [Nitrobacter hamburgensis X14]
 gi|91800668|gb|ABE63043.1| RNAse III [Nitrobacter hamburgensis X14]
          Length = 266

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 88/202 (43%), Positives = 121/202 (59%), Gaps = 3/202 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + +E+R+G+ FA+ SLL  A TH S    S    +SY+RLEFLGD +LGL++S +L+  F
Sbjct: 44  AAIEQRLGHKFADMSLLTTAFTHVSALKSSRGRSDSYQRLEFLGDHVLGLVVSDMLYRAF 103

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS R   LV  ETC  VA+ LDL   I++ +           S+  D+ E++I
Sbjct: 104 PKADEGELSKRLAELVRKETCIDVAKSLDLQDGIKLGAVGAGAGARLRRSVLGDICEAVI 163

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG   A  FV++ W +R  K  +  RD KT LQEWA  +   TP Y+   R+GP
Sbjct: 164 GAVYLDGGYAAAAAFVERNWLERMRKPVRPLRDPKTVLQEWAQGQGLPTPVYREVERTGP 223

Query: 184 DHDPRFTVVVEISGLAPAQGMD 205
            HDPRF V VE+ GL  ++G+ 
Sbjct: 224 HHDPRFRVAVELPGLEASEGIG 245


>gi|188577282|ref|YP_001914211.1| ribonuclease III [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521734|gb|ACD59679.1| ribonuclease III [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 226

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 76/214 (35%), Positives = 105/214 (49%), Gaps = 6/214 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+  LL +AL H S         ERLEFLGD I+ LL++  L+  +  A EG L+
Sbjct: 12  IGHAFADPDLLAQALRHRSAG---TPHNERLEFLGDGIVNLLVAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGEWKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E               AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   +   +A A+G   S+R AEQ AA  V+ + 
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222


>gi|145296037|ref|YP_001138858.1| ribonuclease III [Corynebacterium glutamicum R]
 gi|140845957|dbj|BAF54956.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 247

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 4/225 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
            A+ +  L   +G     R LL  ALTH S ++      + ERLEFLGD +LGL ++  L
Sbjct: 19  DAVDHQPLLDHLGVDIQ-RDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLSVANKL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + S+ E ++S    S+VS    + +ARE+DL + I +             SI AD  
Sbjct: 78  YEQYPSSPESDVSKMRASIVSRYGLADIAREIDLGNHILLGKGELLTEGRSKDSILADTT 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+L+ A++   G E A   + + +  +   +         +            P  + + 
Sbjct: 138 EALLGAIFRQHGFETARDVILRLFAYKIDNASARGIHQDWKTTLQEELAQRKRPMAEYSA 197

Query: 180 RS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            S GPDHD  FT +V + G    +G   +K+ AEQ AA +  ++ 
Sbjct: 198 TSVGPDHDLVFTAIVTLEGEEMGRGEGPNKKLAEQEAARQAFRKL 242


>gi|172355315|ref|NP_001116485.1| endoribonuclease Dicer-1 [Apis mellifera]
 gi|170181362|gb|ACB11577.1| dicer-1 CG4792-PA-like protein [Apis mellifera]
          Length = 1946

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 86/248 (34%), Gaps = 29/248 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y  LEK IGY F + S L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1695 YEELEKNIGYKFHDISYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDTR 1754

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A       + R  S     V +    IQ +   S+  
Sbjct: 1755 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSIVINRFVRIQEENGHSIGE 1814

Query: 125  ALYLDGGIEVAGTFVDKYWK------------------------QRALKSGKFRRDAKTE 160
              YL G  E       +  K                             +       +  
Sbjct: 1815 EYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLGSGMSLDAVWSVYYAIMKNEIEQFS 1874

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
                      +      T + G         R  V V++ G    +G+  + R A+  AA
Sbjct: 1875 TNVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAKCTAA 1934

Query: 217  AEVLKREG 224
               LK+  
Sbjct: 1935 KCALKKLK 1942



 Score = 43.0 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             SL+ +ALT S+ +     + ERLE +GD  L   I+T L+  +D+  EG+LS   +  V
Sbjct: 1417 PSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQV 1474

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            S     ++ R+  L   +  +     D            +E
Sbjct: 1475 SNLNLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELE 1515


>gi|258539823|ref|YP_003174322.1| ribonuclease III [Lactobacillus rhamnosus Lc 705]
 gi|257151499|emb|CAR90471.1| Ribonuclease III [Lactobacillus rhamnosus Lc 705]
          Length = 231

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 91/205 (44%), Gaps = 5/205 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
            S L +R G  F + SLL++A THSS  + ++E      ERLEFLGD +L L +S  L+ 
Sbjct: 7   VSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYR 66

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+L+    + V     S  ++E     +I++     K       ++  D+ E+
Sbjct: 67  KFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLEDLFEA 126

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
              ALYLD G E    F  +    +         +D KT LQE       V   Y +   
Sbjct: 127 FNGALYLDQGREANIKFAKQIIFPKIDAGEFSADQDHKTALQETLQQNGDVAIVYHLLDE 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMD 205
            GP H+ +F V VE+ G     G  
Sbjct: 187 KGPAHERQFHVDVEVEGRVLGTGFG 211


>gi|314055212|ref|YP_004063550.1| ribonuclease III [Ostreococcus tauri virus 2]
 gi|313575103|emb|CBI70116.1| ribonuclease III [Ostreococcus tauri virus 2]
          Length = 230

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 4/226 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTL 58
                  +E+ +G    N S  ++A TH S    Y    ES+E LEF+GD +LG +I+  
Sbjct: 1   MNFNQQDIEQLVGTKIKNLSFYQRAFTHKSALKEYEQFNESFETLEFMGDSVLGFIITKF 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF+ ++  +EG L+     LV +ET + +A +L L + + +    +++  +    I  DV
Sbjct: 61  LFDRYEERQEGFLTKARTKLVRSETLADIALKLGLNNMVLMDEKGQRNQWNNNPKILEDV 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            E+L+ A+Y+D G+  A  FV + +      +                    +  +    
Sbjct: 121 FEALVGAIYMDLGLLHAKEFVLRIYNDPRYINLNAIMIDDNFKDHLMRYCQIMNFQLPEY 180

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              G  H+  F +   I+G    +G   SK+ AEQ+AA    ++  
Sbjct: 181 RVVG-HHEGIFYIDAYINGQFGGRGQAKSKKQAEQLAARAFFEQLK 225


>gi|24637290|gb|AAN63637.1|AF440766_1 ribonuclease III [Mus musculus]
          Length = 541

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 10/229 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 273 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 332

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V        AD+ ES 
Sbjct: 333 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRT-KTLADLWESF 391

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 392 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 451

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           K     GP H   + V V   G     G   S + AE  AA + L++  
Sbjct: 452 KTLQTVGPSHARTYPVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 500



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 130 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAMVQNQHLAMLAKKLELDRFM 189

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
             +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 190 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 249

Query: 158 KTELQEWAHAKFGVTPEYKVT 178
              LQ           E    
Sbjct: 250 LHPLQLQEPNTDRQLIETSPV 270



 Score = 42.2 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9  LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
          L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 46 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 76


>gi|239631967|ref|ZP_04674998.1| ribonuclease 3 [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301066653|ref|YP_003788676.1| dsRNA-specific ribonuclease [Lactobacillus casei str. Zhang]
 gi|239526432|gb|EEQ65433.1| ribonuclease 3 [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300439060|gb|ADK18826.1| dsRNA-specific ribonuclease [Lactobacillus casei str. Zhang]
          Length = 231

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 92/205 (44%), Gaps = 5/205 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
            S L +R G  F + SLL++A THSS  + ++E      ERLEFLGD +L L +S  L+ 
Sbjct: 7   VSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYR 66

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+L+    + V     S  ++E     +I++     K       ++  D+ E+
Sbjct: 67  KFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARKRLTLLEDLFEA 126

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
              ALYLD G +    F ++    +         +D KT LQE       V   Y +   
Sbjct: 127 FNGALYLDQGRDANIRFAEQIIFPKIDAGEFSADQDHKTALQEVLQQNGDVAIVYHLLDE 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMD 205
            GP H+ +F V VE+ G     G  
Sbjct: 187 QGPAHERQFHVDVEVDGRVLGTGFG 211


>gi|241888745|ref|ZP_04776051.1| ribonuclease III [Gemella haemolysans ATCC 10379]
 gi|241864421|gb|EER68797.1| ribonuclease III [Gemella haemolysans ATCC 10379]
          Length = 237

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 103/232 (44%), Gaps = 9/232 (3%)

Query: 1   MSALRYSTLEKRIG--YAFANR--SLLEKALTHSSISHSYQ----ESYERLEFLGDRILG 52
           M       L   +   Y F  +     + + +HSS ++  +     +YERLEFLGD ++ 
Sbjct: 1   MERTHIERLLNNLNEEYGFNLKFSENFKNSFSHSSYTNEKRIAKHLNYERLEFLGDAVVE 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L  S  LF  F    EGEL+    S+V  +T  + A +L L   I +     K       
Sbjct: 61  LTTSEFLFKKFSELPEGELTKLRASIVCEKTLVKYALQLSLDKCIYLGKGEEKMGGRSRA 120

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGV 171
           ++ AD+ ES   A+YL+  +EV  TF++   + +          D KT LQE+       
Sbjct: 121 ALLADIFESFTGAMYLESNLEVVKTFLNNTLFTEVQDLEYHSFVDYKTILQEYISKIKLG 180

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             EY V   SGP H   FT  V I       G   +K+ +EQ++A + L++ 
Sbjct: 181 EIEYVVLDSSGPSHSKTFTSAVLIGRKQYGSGTATTKKESEQLSAKQALEKL 232


>gi|324501501|gb|ADY40667.1| Ribonuclease 3 DROSHA [Ascaris suum]
          Length = 1304

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 87/226 (38%), Gaps = 11/226 (4%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             +  EK IG  F +  +L KA T  +   ++      +RLEFLGD +L L+ +  L+ HF
Sbjct: 999  LTEFEKSIGVTFKHIRVLAKAFTRRNVGFNNLTLGHNQRLEFLGDTVLQLITTDYLYKHF 1058

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC---SFMTSIQADVVE 120
                EG LS+    LVS +T S +  ++ +  ++ +   ++K+                 
Sbjct: 1059 PMHHEGHLSILRTCLVSNKTQSVICDDVGMTKYLVMPKAMQKNGAPVLRVKDKADLVESF 1118

Query: 121  SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG------VTPE 174
                 +    G       V  + + +     +   D K++LQ+               PE
Sbjct: 1119 LGALYVDRGLGYCKVFCRVCFFPRLKFFIVSQRWNDPKSQLQQCCLTLRQVDGGEPDIPE 1178

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            Y+     GP +   + V V       A G   + + A+  AA   L
Sbjct: 1179 YRTIAVEGPTNTRVYKVAVYFRKKRLAVGSGHTMQIAQMHAAENAL 1224



 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 53/115 (46%)

Query: 30  SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
             +  S     ERLEFLGD ++  + +  LF  F    EG L+   +++V  +  + +A+
Sbjct: 846 KKVEQSPLNHNERLEFLGDAVIEFITTIHLFFMFTELDEGGLATYRSTMVQNKNLAVLAK 905

Query: 90  ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           ++ L  F+  +        S +    A+  E+++AA+YLD GI+           
Sbjct: 906 KIGLDEFMLYAHGPDLCHESDLRHAMANAFEAMMAAIYLDAGIDECDRIFGNAMF 960



 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQES 39
           E+RI Y F NRSLLE ALTH S   +Y  +
Sbjct: 768 EERIHYIFKNRSLLELALTHPSYRTNYGTN 797


>gi|319900438|ref|YP_004160166.1| RNAse III [Bacteroides helcogenes P 36-108]
 gi|319415469|gb|ADV42580.1| RNAse III [Bacteroides helcogenes P 36-108]
          Length = 290

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + +G+   N  + ++AL H SIS         + ERLEFLGD IL  ++  +++ HF+
Sbjct: 23  FYEILGFFPRNIQIYQQALLHKSISIRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFE 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   ++ SS           +     V ++  
Sbjct: 83  GRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSSRSSSHNSYMYGNAFEAFVGAIYL 142

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
               D   +               K  +   + K++L EW+           +      D
Sbjct: 143 DQGYD-RCKWFMEEKIFKHYIDLDKMSRKEVNFKSKLIEWSQKNKMEVSFELIKQLLDKD 201

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           ++P F   + I G++   G   SK+ ++Q AA   L++  
Sbjct: 202 YNPMFHTEIRIEGVSAGTGTGYSKKESQQNAAQIALRKIK 241


>gi|329954117|ref|ZP_08295212.1| ribonuclease III [Bacteroides clarus YIT 12056]
 gi|328528094|gb|EGF55074.1| ribonuclease III [Bacteroides clarus YIT 12056]
          Length = 327

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + +G+   +    ++AL H S S         + ERLEFLGD IL  ++  +++ HF+
Sbjct: 35  FYRILGFFPRDIRFYQQALLHKSTSVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFE 94

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   ++ S+           +     + ++  
Sbjct: 95  GRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSTRSSSHNSYMYGNAFEAFIGAIYL 154

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
               +   +     + K +      S K     K++L EW+           +      D
Sbjct: 155 DQGYERCKQFMEKKILKNYIDLDKMSRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDRD 213

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           ++P F   V I  L+   G   SK+ ++Q AA   LK+  
Sbjct: 214 YNPMFHTEVRIESLSAGTGTGYSKKESQQNAAQMALKKIK 253


>gi|125584735|gb|EAZ25399.1| hypothetical protein OsJ_09217 [Oryza sativa Japonica Group]
          Length = 1883

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 86/238 (36%), Gaps = 18/238 (7%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M ++ + TL+  +G  F N+ LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1533 MRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1592

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD--- 117
              +     G L+    + V+ E  ++VA +  L   +R  S   +           +   
Sbjct: 1593 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELL 1652

Query: 118  ----------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
                        ++      +   I  A      Y      K  +         +     
Sbjct: 1653 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMH 1712

Query: 168  KFGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E       G ++         TV V + G+      +  K+ A+++AA   L
Sbjct: 1713 PVRELQERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNAL 1770



 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   +    YER E LGD  L  ++S  LF  +    
Sbjct: 1323 QLKDIIDYPVPATKIL-EALTAASCQETL--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1379

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1380 EGQLTRMRQQMVSNMVLYQYALNKTLQSYIQ 1410



 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 8/78 (10%)

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMDC 206
            +   +  L +    +    P+Y+     GP H  RF   V ++            + M  
Sbjct: 1795 QMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPM-P 1853

Query: 207  SKRAAEQVAAAEVLKREG 224
            S + A+  AA  +L+   
Sbjct: 1854 SVKKAKDSAAVLLLELLN 1871


>gi|125542181|gb|EAY88320.1| hypothetical protein OsI_09779 [Oryza sativa Indica Group]
          Length = 1883

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 86/238 (36%), Gaps = 18/238 (7%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M ++ + TL+  +G  F N+ LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1533 MRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1592

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD--- 117
              +     G L+    + V+ E  ++VA +  L   +R  S   +           +   
Sbjct: 1593 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELL 1652

Query: 118  ----------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
                        ++      +   I  A      Y      K  +         +     
Sbjct: 1653 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMH 1712

Query: 168  KFGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E       G ++         TV V + G+      +  K+ A+++AA   L
Sbjct: 1713 PVRELQERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNAL 1770



 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 1323 QLKDIIDYPVPATKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1379

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1380 EGQLTRMRQQMVSNMVLYQYALNKTLQSYIQ 1410



 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 8/78 (10%)

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMDC 206
            +   +  L +    +    P+Y+     GP H  RF   V ++            + M  
Sbjct: 1795 QMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPM-P 1853

Query: 207  SKRAAEQVAAAEVLKREG 224
            S + A+  AA  +L+   
Sbjct: 1854 SVKKAKDSAAVLLLELLN 1871


>gi|75330224|sp|Q8LMR2|DCL1_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 1; AltName:
            Full=Dicer-like protein 1; Short=OsDCL1
 gi|21426125|gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group]
 gi|108705906|gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza
            sativa Japonica Group]
          Length = 1883

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 86/238 (36%), Gaps = 18/238 (7%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M ++ + TL+  +G  F N+ LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1533 MRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1592

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD--- 117
              +     G L+    + V+ E  ++VA +  L   +R  S   +           +   
Sbjct: 1593 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELL 1652

Query: 118  ----------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
                        ++      +   I  A      Y      K  +         +     
Sbjct: 1653 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMH 1712

Query: 168  KFGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E       G ++         TV V + G+      +  K+ A+++AA   L
Sbjct: 1713 PVRELQERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNAL 1770



 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   +    YER E LGD  L  ++S  LF  +    
Sbjct: 1323 QLKDIIDYPVPATKIL-EALTAASCQETL--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1379

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1380 EGQLTRMRQQMVSNMVLYQYALNKTLQSYIQ 1410



 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 8/78 (10%)

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMDC 206
            +   +  L +    +    P+Y+     GP H  RF   V ++            + M  
Sbjct: 1795 QMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPM-P 1853

Query: 207  SKRAAEQVAAAEVLKREG 224
            S + A+  AA  +L+   
Sbjct: 1854 SVKKAKDSAAVLLLELLN 1871


>gi|193786026|dbj|BAG51002.1| unnamed protein product [Homo sapiens]
          Length = 554

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 298 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 357

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
               G L+   ++LV+    + +A + D   +                            
Sbjct: 358 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 417

Query: 98  -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 418 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 477

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 478 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 533

Query: 213 QVAAAEVLKREG 224
             AA   L+   
Sbjct: 534 SAAARRALRSLK 545


>gi|89075088|ref|ZP_01161529.1| ribonuclease III [Photobacterium sp. SKA34]
 gi|89049175|gb|EAR54740.1| ribonuclease III [Photobacterium sp. SKA34]
          Length = 239

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 105/207 (50%), Gaps = 6/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L++++GY F N  L+  ALTH S         ERLEFLGD IL  +++  L++ F S 
Sbjct: 21  NRLQRKLGYQFNNCELMTLALTHRSA---NGTHNERLEFLGDSILSFVVADDLYHRFPSV 77

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV  +T +++ RE +L   + +     K       SI AD VE++I A+
Sbjct: 78  DEGDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFRRDSILADCVEAIIGAI 137

Query: 127 YLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E     V      +   ++ G  ++D KT LQE    +    P Y VT   G  
Sbjct: 138 YLDSDVEQVRRIVLAWYKTRLDTIEPGINQKDPKTRLQECLQGRRLPLPAYTVTKVQGEA 197

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210
           H+  FTV  +++GL  P  G   S+R 
Sbjct: 198 HNQEFTVQCDVTGLDKPVIGKGGSRRK 224


>gi|325920677|ref|ZP_08182587.1| RNAse III [Xanthomonas gardneri ATCC 19865]
 gi|325548867|gb|EGD19811.1| RNAse III [Xanthomonas gardneri ATCC 19865]
          Length = 227

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 78/214 (36%), Positives = 109/214 (50%), Gaps = 6/214 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+  LL +AL H S         ERLEFLGD I+ LLI+  L+  +  A EG L+
Sbjct: 13  IGHAFADPGLLAQALRHRSAG---TPHNERLEFLGDGIVNLLIAEALYQRWPKADEGALT 69

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 70  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 129

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 130 ERCREVVLPWFEPSLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 189

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   +   +A A+G   S+R AEQ AA  V+ + 
Sbjct: 190 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 223


>gi|329114470|ref|ZP_08243232.1| Ribonuclease 3 [Acetobacter pomorum DM001]
 gi|326696546|gb|EGE48225.1| Ribonuclease 3 [Acetobacter pomorum DM001]
          Length = 253

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 77/218 (35%), Positives = 110/218 (50%), Gaps = 12/218 (5%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----------SYERLEFLGDRIL 51
             R   LE R+GY F N  LL++ALTH S +H               S ERLEF+GDR+L
Sbjct: 21  RFRLEELEVRLGYRFVNPDLLQEALTHRSAAHQKAGGRKRQKAKGAGSNERLEFIGDRVL 80

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
           GLL++  L   F + +EG L  R   LVS  + +++A  LDL   + V++   +      
Sbjct: 81  GLLMAEWLLERFPNEQEGALGSRLAHLVSRVSLAEIADRLDLPQSLTVAAHEARAGVQTA 140

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
            ++ AD +E+++ A++LDGG+E A   V  +W+          +D KT LQEW   +   
Sbjct: 141 ANVVADALEAVLGAVFLDGGLEPARQMVRDWWRSALDAQAHPPKDPKTALQEWVLGRGQS 200

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            P Y+     GP H P F V V   GL   +G   SKR
Sbjct: 201 LPVYETIGADGPSHAPLFVVRVTAGGL-FGEGRAGSKR 237


>gi|307190121|gb|EFN74275.1| Endoribonuclease Dcr-1 [Camponotus floridanus]
          Length = 1976

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 87/253 (34%), Gaps = 29/253 (11%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLL 59
            M    Y  LEK IGY F + S L +A TH+S   +   + Y+RLEFLGD +L  LI+  L
Sbjct: 1712 MMLDGYDELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHL 1771

Query: 60   FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
            +        G L+   ++LV+    + +A       + R  S     V +    IQ +  
Sbjct: 1772 YEDSRQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENG 1831

Query: 120  ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
             S+    YL G  E       +  K               +      A + V      + 
Sbjct: 1832 HSISEEYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSE 1891

Query: 180  RSGPDHD----------------------------PRFTVVVEISGLAPAQGMDCSKRAA 211
                  +                             R  V V++ G    +G+  + R A
Sbjct: 1892 IEQFSTNVPKSPIRELLELEPETAKFGRPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIA 1951

Query: 212  EQVAAAEVLKREG 224
            +  AA   LK+  
Sbjct: 1952 KCTAAKCALKKLK 1964



 Score = 43.0 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             SL+ +ALT S+ +     + ERLE +GD  L   I+T L+  +D+  EG+LS   +  V
Sbjct: 1439 PSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQV 1496

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            S     ++ R+  L   +  +     D            +E
Sbjct: 1497 SNLNLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELE 1537


>gi|90412086|ref|ZP_01220093.1| ribonuclease III [Photobacterium profundum 3TCK]
 gi|90327064|gb|EAS43443.1| ribonuclease III [Photobacterium profundum 3TCK]
          Length = 224

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 104/207 (50%), Gaps = 6/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L++++GY F +  L+  +LTH S         ERLEFLGD IL  +I+  L++ F   
Sbjct: 6   NRLQRKLGYQFNSTELMTLSLTHRSA---NGTHNERLEFLGDSILSFVIADDLYHRFPHV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV  +T +++ RE +L  ++ +     K       SI AD VE++I A+
Sbjct: 63  DEGDMSRMRATLVRGKTLAELGREFELGDYLLLGPGELKSGGFRRDSILADCVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD   E     +  +++ R         ++D KT LQE    +    P Y VT   G  
Sbjct: 123 YLDSDTEQVRKVILSWYQSRLETIQPGINQKDPKTRLQECLQGRRLALPAYTVTKVHGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210
           H+  FTV  E++GL  P  G   S+R 
Sbjct: 183 HNQEFTVQCEVTGLDKPVIGKGSSRRK 209


>gi|77359683|ref|YP_339258.1| RNase III, ds RNA [Pseudoalteromonas haloplanktis TAC125]
 gi|76874594|emb|CAI85815.1| RNase III, ds RNA [Pseudoalteromonas haloplanktis TAC125]
          Length = 200

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 66/200 (33%), Positives = 99/200 (49%), Gaps = 5/200 (2%)

Query: 27  LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86
           +TH S      +  ERLEFLGD IL  +I+  L+  F  A+EG+LS   ++LV  +T ++
Sbjct: 1   MTHRS---HKGQHNERLEFLGDSILSFVIANALYAKFPKAREGDLSRMRSTLVRGQTLAE 57

Query: 87  VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146
              E  L  ++R+     K       S  AD VE++I A++LD  IE  G  +  ++++R
Sbjct: 58  FGLEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIGAVFLDSDIERCGELILSWYEER 117

Query: 147 ALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
                    ++D KT LQE   A+    P Y V    G  H+  FTV   + G+     +
Sbjct: 118 LNAISPGLNQKDPKTLLQEHLQARKLSLPGYTVVDTKGQAHNQTFTVECIVDGMDSIISV 177

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             S+R AEQ AA + LK   
Sbjct: 178 GSSRRKAEQKAAEKALKILK 197


>gi|315604391|ref|ZP_07879457.1| ribonuclease III [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314097|gb|EFU62148.1| ribonuclease III [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 241

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 89/209 (42%), Gaps = 5/209 (2%)

Query: 20  RSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
            +LL+ AL H S ++      + ERLEFLGD +L ++I+  L+  +    E +LS    +
Sbjct: 28  PTLLQLALVHRSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRAA 87

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
            VS +  +  AR + L  F+ +             SI +D  E+LI A YL  G+E A  
Sbjct: 88  TVSQQPLAAAARRIGLGDFVFLGKGESTHGGRDKDSILSDTFEALIGATYLTSGLEEARR 147

Query: 138 FV-DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            +  +     A    + +      L        G+          GPDH   FT    +S
Sbjct: 148 VILARLGFLLADAPSRGQHQDWKTLLVEYSQSKGLGEVSYEVEGEGPDHQRVFTARAYVS 207

Query: 197 G--LAPAQGMDCSKRAAEQVAAAEVLKRE 223
               A  +G   SK+ AE  AA + +KR 
Sbjct: 208 ESSEALGEGRASSKKHAENAAAQDAMKRL 236


>gi|91789485|ref|YP_550437.1| ribonuclease III [Polaromonas sp. JS666]
 gi|91698710|gb|ABE45539.1| RNAse III [Polaromonas sp. JS666]
          Length = 233

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/212 (33%), Positives = 104/212 (49%), Gaps = 6/212 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               L+KR+ + F+N  LL +ALTH S S    +  ER+EFLGD +L L ++ LL+    
Sbjct: 10  DLLALQKRLQHEFSNPKLLAQALTHRSFS---ADHNERIEFLGDSVLNLAVAGLLYEQLS 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV  +T  ++A  L L   +R+     +       SI AD +E++I 
Sbjct: 67  ELPEGDLSRVRANLVKQDTLHKLAVTLGLPEMLRLGEGEARSGGQKRPSILADALEAVIG 126

Query: 125 ALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G + A           +   +     +D KTELQEW   +    P Y+V    G
Sbjct: 127 AVYLDAGFDKADQLVRRLFRNVEINPQMQAIGKDPKTELQEWLQGRKMNLPIYRVVGTMG 186

Query: 183 PDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
             H   F V  EI+    A+ G+  S+RA EQ
Sbjct: 187 AAHKQTFDVECEITEYGRAERGIGGSRRAGEQ 218


>gi|258541744|ref|YP_003187177.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-01]
 gi|256632822|dbj|BAH98797.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-01]
 gi|256635879|dbj|BAI01848.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-03]
 gi|256638934|dbj|BAI04896.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-07]
 gi|256641988|dbj|BAI07943.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-22]
 gi|256645043|dbj|BAI10991.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-26]
 gi|256648098|dbj|BAI14039.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-32]
 gi|256651151|dbj|BAI17085.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654142|dbj|BAI20069.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-12]
          Length = 238

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 78/218 (35%), Positives = 110/218 (50%), Gaps = 12/218 (5%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----------SYERLEFLGDRIL 51
             R   LE R+GY F N  LL++ALTH S +H               S ERLEF+GDR+L
Sbjct: 6   RFRLEELEVRLGYRFVNPDLLQEALTHRSAAHQKAGGRKRQKAKGAGSNERLEFIGDRVL 65

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
           GLL++  L   F + +EG L  R   LVS  + +++A  LDL   + V++   +      
Sbjct: 66  GLLMAEWLLERFPNEQEGALGSRLAHLVSRVSLAEIADRLDLPQSLTVAAHEARAGVQTA 125

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
            ++ AD +E+++ A++LDGG+E A   V  +WK          +D KT LQEW   +   
Sbjct: 126 ANVVADALEAVLGAVFLDGGLEPARQMVRDWWKSALDAQAHPPKDPKTALQEWVLGRGQS 185

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            P Y+     GP H P F V V   GL   +G   SKR
Sbjct: 186 LPVYETIGADGPSHAPLFVVRVTAGGL-FGEGRAGSKR 222


>gi|6102924|emb|CAB59269.1| hypothetical protein [Homo sapiens]
          Length = 525

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 269 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 328

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
               G L+   ++LV+    + +A + D   +                            
Sbjct: 329 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 388

Query: 98  -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 389 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 448

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 449 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 504

Query: 213 QVAAAEVLKREG 224
             AA   L+   
Sbjct: 505 SAAAKRALRSLK 516


>gi|90580325|ref|ZP_01236132.1| ribonuclease III [Vibrio angustum S14]
 gi|90438627|gb|EAS63811.1| ribonuclease III [Vibrio angustum S14]
          Length = 224

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 106/207 (51%), Gaps = 6/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L++++GY F N  L+  ALTH S         ERLEFLGD IL  +I+  L++ F S 
Sbjct: 6   NRLQRKLGYQFNNCELMTLALTHRSA---NGTHNERLEFLGDSILSFVIADDLYHRFPSV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV  +T +++ RE +L   + +     K       SI AD VE++I A+
Sbjct: 63  DEGDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFRRDSILADCVEAIIGAI 122

Query: 127 YLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E   + V      +   ++ G  ++D KT LQE    +    P Y VT   G  
Sbjct: 123 YLDSDVEQVRSIVLAWYKTRLDTIEPGINQKDPKTRLQECLQGRRLPLPAYTVTKVQGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210
           H+  FTV  +++GL  P  G   S+R 
Sbjct: 183 HNQEFTVQCDVTGLDKPVIGKGGSRRK 209


>gi|308237838|ref|NP_001184123.1| endoribonuclease Dicer [Sus scrofa]
 gi|307715909|gb|ADN88174.1| dicer [Sus scrofa]
          Length = 1915

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 96/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E++I Y+F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1659 FENFERKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1718

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111
                G L+   ++LV+    + +A + D   + +  S     V                 
Sbjct: 1719 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1778

Query: 112  -------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                    D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1779 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1838

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1839 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1894

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1895 SAAARRALRSLK 1906



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 14   GYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
            GY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG
Sbjct: 1282 GYSPRTPGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEG 1339

Query: 70   ELSVRFNSLVSAETCSQVARELD 92
             LS   +  VS     ++ ++  
Sbjct: 1340 RLSYMRSKKVSNCNLYRLGKKKG 1362


>gi|319640160|ref|ZP_07994887.1| ribonuclease 3 [Bacteroides sp. 3_1_40A]
 gi|317388438|gb|EFV69290.1| ribonuclease 3 [Bacteroides sp. 3_1_40A]
          Length = 308

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 5/227 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57
               Y    K +G+   + S+ E+AL H S+S         + ERLEFLGD IL  +++ 
Sbjct: 16  DRESYLRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVAD 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +++  F+  +EG L+   + +V  ET +++A E+ L   I+ ++           +    
Sbjct: 76  IVYKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTARQSSHNSYMCGNAFEA 135

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           +V ++          +               K  +   + K++L EW+           +
Sbjct: 136 LVGAIYLDRGYR-ACKYFMEHRIIGPYINLEKISRKEVNFKSKLIEWSQKNRFEVTFELI 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           T      + P F   V + G++  +G   SK+ ++Q+AA   L +  
Sbjct: 195 TQSHDQGYSPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGKIK 241


>gi|148658678|ref|YP_001278883.1| ribonuclease III [Roseiflexus sp. RS-1]
 gi|254807897|sp|A5V230|RNC_ROSS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|148570788|gb|ABQ92933.1| RNAse III [Roseiflexus sp. RS-1]
          Length = 237

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 72/215 (33%), Positives = 105/215 (48%), Gaps = 8/215 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS------YQESYERLEFLGDRILGLLI 55
                  L  R+G  F+++ LLE+ALTHSS  +       + +S ERLEFLGD I+  L 
Sbjct: 1   MRKSVDELSARLGVTFSDQRLLEQALTHSSFLNEHVEERMHLDSNERLEFLGDAIINFLA 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           + L+F  F  A EGEL+    +L+  ET +  A+  +L +++ ++            ++ 
Sbjct: 61  ARLVFERFPDAGEGELTAWRTALIRTETLAGFAQRYNLGAYVLLARGEESSGARQRQALL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
           AD  E++IAAL+LD G+    TF       +  +L       D K+ LQ    A+  VTP
Sbjct: 121 ADTFEAVIAALFLDQGLNAVRTFLLPLFEAELASLPDRTLPVDYKSRLQARIQAERRVTP 180

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            Y    RSGP+H P FTV V         G   SK
Sbjct: 181 RYHEIDRSGPEHRPEFTVEVRAGEERLGTGKGPSK 215


>gi|197122613|ref|YP_002134564.1| ribonuclease III [Anaeromyxobacter sp. K]
 gi|196172462|gb|ACG73435.1| Ribonuclease III [Anaeromyxobacter sp. K]
          Length = 383

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 73/212 (34%), Positives = 112/212 (52%), Gaps = 6/212 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHF 63
            LE R+G A  +R     ALTH S  + ++E      ERLEFLGD ++ L +S  L   F
Sbjct: 27  ALEARLGIAVTDRQAALAALTHKSYVNEHREDGLQDNERLEFLGDAVIDLAVSHRLMERF 86

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            SA+EG+LS    ++V  +  + +AR LDL + +R+            +S+ AD +E++I
Sbjct: 87  PSAREGDLSKMRAAVVDEQGLAGMARALDLGTLLRLGRGEELTGGRQKSSLLADAMEAVI 146

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+Y   G+     FVD++  +   ++      RD KT+LQE + ++   TP Y+V    
Sbjct: 147 AAVYQGQGLPAVLCFVDRFLGEAFARAAAGTLDRDFKTQLQELSQSRLRATPRYRVVAEH 206

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           GPDH   F V  ++ G    +G   SK+ AEQ
Sbjct: 207 GPDHSKTFEVETDLRGEVLGRGAGRSKKDAEQ 238


>gi|220917396|ref|YP_002492700.1| Ribonuclease III [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955250|gb|ACL65634.1| Ribonuclease III [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 383

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 73/212 (34%), Positives = 112/212 (52%), Gaps = 6/212 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHF 63
            LE R+G A  +R     ALTH S  + ++E      ERLEFLGD ++ L +S  L   F
Sbjct: 27  ALEARLGIAVTDRQAALAALTHKSYVNEHREDGLQDNERLEFLGDAVIDLAVSHRLMERF 86

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            SA+EG+LS    ++V  +  + +AR LDL + +R+            +S+ AD +E++I
Sbjct: 87  PSAREGDLSKMRAAVVDEQGLAGMARALDLGTLLRLGRGEELTGGRQKSSLLADAMEAVI 146

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+Y   G+     FVD++  +   ++      RD KT+LQE + ++   TP Y+V    
Sbjct: 147 AAVYQGQGLPAVLCFVDRFLGEAFARAAAGTLDRDFKTQLQELSQSRLRATPRYRVVAEH 206

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           GPDH   F V  ++ G    +G   SK+ AEQ
Sbjct: 207 GPDHSKTFEVETDLRGEVLGRGAGRSKKDAEQ 238


>gi|146318845|ref|YP_001198557.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33]
 gi|145689651|gb|ABP90157.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33]
          Length = 196

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 87/195 (44%), Gaps = 1/195 (0%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           SI+       ERLEFLGD +L L+IS  L+  +    EGE+S   ++ V  E+ +  +R 
Sbjct: 2   SIALLKISHNERLEFLGDAVLQLMISKYLYQKYPDRPEGEMSKLRSTFVREESLAGFSRA 61

Query: 91  LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALK 149
                F+R+     K       +I  D  E+ + AL LD G +    F+ K    R    
Sbjct: 62  CGFDRFLRLGKGEEKSGGRNRDTILGDAFEAFLGALLLDKGEKTVEEFIHKVMIPRLEKG 121

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           + +   D KT LQE       +   Y+V   SGP HD  F V V        +G   SK+
Sbjct: 122 NFERVTDYKTALQEILQVNGEIAISYQVIAESGPAHDKTFEVEVSADQRVIGRGRGRSKK 181

Query: 210 AAEQVAAAEVLKREG 224
            AEQ AA   ++  G
Sbjct: 182 LAEQAAAKNAVEARG 196


>gi|56478590|ref|YP_160179.1| ribonuclease III [Aromatoleum aromaticum EbN1]
 gi|81598583|sp|Q5P086|RNC_AZOSE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56314633|emb|CAI09278.1| ribonuclease III [Aromatoleum aromaticum EbN1]
          Length = 225

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 70/208 (33%), Positives = 102/208 (49%), Gaps = 6/208 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   L++ +G+ F N +LLE+ALTH S       + ERLEFLGD IL  +++  LF  F 
Sbjct: 4   KLDRLQRSLGHRFDNPALLEQALTHRSFGQ---PNNERLEFLGDSILNCVVAIALFERFA 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           S +EGE+S    SLV  +   +VA ELDL  ++R+     K       SI AD +E++ A
Sbjct: 61  SLREGEMSRLRASLVCQDGLHRVALELDLGEYLRLGEGEMKSGGFRRPSILADALEAVFA 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A +LD G   A   +D+ +             +D KT LQE    +    P Y +    G
Sbjct: 121 ATFLDQGFAAAKAVIDRLYDPMIAAIDPGVAAKDPKTALQELLQGRKLPLPTYVMAKVHG 180

Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKR 209
             H   F VV E++ L     G   ++R
Sbjct: 181 EAHAQEFEVVCEVNALNLRTTGRGTNRR 208


>gi|294787661|ref|ZP_06752905.1| ribonuclease III [Simonsiella muelleri ATCC 29453]
 gi|294483954|gb|EFG31637.1| ribonuclease III [Simonsiella muelleri ATCC 29453]
          Length = 235

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 111/223 (49%), Gaps = 10/223 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L++ I + F N +L+++ALTH S S    ++YERLEF+GD IL  +++ +L+  F   
Sbjct: 11  QKLQQEINFLFKNPNLIQQALTHRSYS---SQNYERLEFIGDSILNYVVAKMLYEAFPKL 67

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG LS     LV   T + +AR+L +   + +     K       SI AD +E+L AA+
Sbjct: 68  PEGRLSPLRAQLVKEATLADIARQLHIGDALFLGVGELKSGGHDRASILADALEALFAAI 127

Query: 127 YLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            LD     +   + K + Q+     + +  +DAKT LQE    +    P+Y++  ++G  
Sbjct: 128 SLDSDFATSEKIIRKIFSQKIKELDTSQSAKDAKTSLQELLQGQKLTLPKYRIDKQTGEG 187

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGIW 226
           +D  F V  ++  L         S+R AEQ  A + +    +W
Sbjct: 188 NDAIFDVSCDLGELGKIFYAQASSRRTAEQECAKQAI----VW 226


>gi|330717913|ref|ZP_08312513.1| ribonuclease III [Leuconostoc fallax KCTC 3537]
          Length = 236

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 91/230 (39%), Gaps = 7/230 (3%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           MS   +   L +    +F N +LL +ALT  +  + + +     Y+RLEFLGD ++   +
Sbjct: 1   MSVDSFKQYLNQTFAISFDNETLLLEALTQRNYLNEHPDETGRDYQRLEFLGDAVMQETV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           +  LF  +    EG+L+    ++V   + +  AR++ L   IR+      +      S+ 
Sbjct: 61  AEYLFRRYPKWHEGQLTEMRIAMVQTRSFAHFARQVRLNEAIRLGKGEEMNGARDRDSLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            D+ E+ I ALYLD G +    F+D                      +      G     
Sbjct: 121 EDIWEAFIGALYLDQGADTVKRFLDATLFAAVDTDFFDHFIDFKSRLQEKLQANGPVDID 180

Query: 176 KVTFRSG--PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             T       D+   F   V +     A+G   S + AE+ AA + L   
Sbjct: 181 YNTISETILADNSTCFEASVSLDDRELARGTGKSIKDAEKAAARKALNSL 230


>gi|157953758|ref|YP_001498649.1| hypothetical protein AR158_C568R [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068406|gb|ABU44113.1| hypothetical protein AR158_C568R [Paramecium bursaria Chlorella
           virus AR158]
          Length = 268

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + +E  IG    +    + A    S +     + +YER+EF+GD +LG +I+  L+++F 
Sbjct: 45  NDIEYLIGMPIIDFEYYKTAF---SYNAIVEGESTYERMEFVGDSVLGFIIARYLYDNFP 101

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG LS      VS +  S +A  + L +F+ +         +    I  DV E+L+ 
Sbjct: 102 GKDEGFLSRLRTKFVSGKFLSSIALRMGLHNFVIMHQKGLYRGWNTNPRILEDVFEALMG 161

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+Y D GI  A  F      + A            +       K  +     V+      
Sbjct: 162 AIYFDLGINAAKQFFMSTLVKYADIHNLMIDTNYKDRLLKHTRKIELQRPEFVSVFEKGG 221

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            +P F V V I+G   + G   S++ AEQ A+   L   GI
Sbjct: 222 ANPSFVVDVVINGQKISTGTGKSRKDAEQNASKLALYSMGI 262


>gi|157952932|ref|YP_001497824.1| hypothetical protein NY2A_B628R [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123159|gb|ABT15027.1| hypothetical protein NY2A_B628R [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 268

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + +E  IG    +    + A    S +     + +YER+EF+GD +LG +I+  L+++F 
Sbjct: 45  NDIEYLIGMPIIDFEYYKTAF---SYNAIVEGESTYERMEFVGDSVLGFIIARYLYDNFP 101

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG LS      VS +  S +A  + L +F+ +         +    I  DV E+L+ 
Sbjct: 102 GKDEGFLSRLRTKFVSGKFLSSIALRMGLHNFVIMHQKGLYRGWNTNPRILEDVFEALMG 161

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+Y D GI  A  F      + A            +       K  +     V+      
Sbjct: 162 AIYFDLGINAAKQFFMSTLVKYADIHNLMIDTNYKDRLLKHTRKIELQRPEFVSVFEKGG 221

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            +P F V V I+G   + G   S++ AEQ A+   L   GI
Sbjct: 222 ANPSFVVDVVINGQKISTGTGKSRKDAEQNASKLALYSMGI 262


>gi|199597132|ref|ZP_03210564.1| dsRNA-specific ribonuclease [Lactobacillus rhamnosus HN001]
 gi|258508646|ref|YP_003171397.1| ribonuclease III [Lactobacillus rhamnosus GG]
 gi|199591936|gb|EDZ00011.1| dsRNA-specific ribonuclease [Lactobacillus rhamnosus HN001]
 gi|257148573|emb|CAR87546.1| Ribonuclease III [Lactobacillus rhamnosus GG]
 gi|259649952|dbj|BAI42114.1| ribonuclease III [Lactobacillus rhamnosus GG]
          Length = 231

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 91/205 (44%), Gaps = 5/205 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
            S L +R G  F + SLL++A THSS  + ++E      ERLEFLGD +L L +S  L+ 
Sbjct: 7   VSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYR 66

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+L+    + V     S  ++E     +I++     K       ++  D+ E+
Sbjct: 67  KFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLEDLFEA 126

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
              ALYLD G E    F  +    +         +D KT LQE       V   Y +   
Sbjct: 127 FNGALYLDQGREANIKFAKRIIFPKIDAGEFSADQDHKTALQETLQQNGDVAIVYHLLDE 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMD 205
            GP H+ +F V VE+ G     G  
Sbjct: 187 KGPAHERQFHVDVEVEGHVLGTGFG 211


>gi|319639176|ref|ZP_07993927.1| ribonuclease 3 [Neisseria mucosa C102]
 gi|317399360|gb|EFV80030.1| ribonuclease 3 [Neisseria mucosa C102]
          Length = 239

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/217 (29%), Positives = 110/217 (50%), Gaps = 6/217 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            ++KR+GY F N  LL++ALTH S      +  ER EF+GD IL   ++ +LF+ F    
Sbjct: 13  AIQKRLGYEFRNMELLQQALTHRSY---NAKHNERFEFVGDSILNYSVARMLFDAFPKLS 69

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EGELS    +LV+    +++A E+++   + + +   K       SI AD +E++ AA+ 
Sbjct: 70  EGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAVS 129

Query: 128 LDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
            D     A   V   + +R  ++     ++D+KT LQE   A+    P+Y++  ++    
Sbjct: 130 FDADFSAAEKVVRHLFAERVKRADLNIGKKDSKTALQEALQARRFALPKYRIEEQAEQTA 189

Query: 186 DPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
           D  F +  ++  L         S++ AEQ AA E L+
Sbjct: 190 DAMFVISCDLGELGFICNARGSSRKVAEQKAACEALE 226


>gi|317474593|ref|ZP_07933867.1| ribonuclease III [Bacteroides eggerthii 1_2_48FAA]
 gi|316909274|gb|EFV30954.1| ribonuclease III [Bacteroides eggerthii 1_2_48FAA]
          Length = 306

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             K +G+   N    ++AL H S S         + ERLEFLGD IL  ++  +++ HF+
Sbjct: 40  FYKILGFFPRNIRFYQQALLHKSTSVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFE 99

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   ++ S+           +    ++ ++  
Sbjct: 100 GRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSTRSSSHNSYMYGNAFEALIGAIYL 159

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
               +   +     + K +      S K     K++L EW+           +      D
Sbjct: 160 DQGYERCKQFMEEKILKNYIDLDKMSRKEVNF-KSKLIEWSQKNKMEVSFELIEQFLDRD 218

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           ++P F   V I  L    G   SK+ ++Q AA   LK+  
Sbjct: 219 YNPMFHTEVLIENLPAGTGTGYSKKESQQNAAQMALKKIK 258


>gi|254281220|ref|NP_001123390.2| endoribonuclease Dicer [Xenopus (Silurana) tropicalis]
 gi|238064965|sp|B3DLA6|DICER_XENTR RecName: Full=Endoribonuclease Dicer
 gi|169261418|gb|ACA52289.1| endoribonuclease [Xenopus tropicalis]
          Length = 1893

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1637 FENFEKKINYPFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1696

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1697 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGM 1756

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 1757 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWHVYYPMMQPLIEKF 1816

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1817 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1872

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1873 SAAARRALRSLK 1884



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 51/143 (35%), Gaps = 2/143 (1%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1270 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1327

Query: 79   VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
            VS     ++ ++    S + VS             I      S         G +V    
Sbjct: 1328 VSNCNLYRLGKKKGSPSRMVVSIFDPPVNWLPPGYIVNQDKNSDKWESNETSGEDVMVNG 1387

Query: 139  VDKYWKQRALKSGKFRRDAKTEL 161
                            R+ K E 
Sbjct: 1388 KIDEDFDDEEDEDLMWRNPKEET 1410


>gi|225847889|ref|YP_002728052.1| ribonuclease III [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644365|gb|ACN99415.1| ribonuclease III [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 238

 Score =  113 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 9/228 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61
           R   LEK + Y F ++SLL  A+TH S    Y    + YE LEFLGD +L L++S +L  
Sbjct: 11  RVENLEKLLDYNFKDKSLLLAAITHRSFVAEYPVKLKDYEVLEFLGDSVLSLIVSEILIK 70

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS   +++VS    S++A+ L+L  F+ +S   +    S   S+  DV E+
Sbjct: 71  QFPDAREGDLSQLRSAIVSEAYLSKLAKLLNLGQFVLISKGEKSQKGSERDSLLCDVFEA 130

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ-----RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +  A+Y+D    +                + +K+    RD K+ LQ      +G  P+Y+
Sbjct: 131 VFGAIYIDTDYNIDTPRNVFNKLFKEKLLQDIKTENIPRDYKSLLQIETQKLYGKIPKYR 190

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +    GP+HD  F V  EI  +        SK+ AE  AA E  ++  
Sbjct: 191 LIHSEGPEHDKVFVVECEIEKIKTTG-KGKSKKEAETQAAKEAFRKIK 237


>gi|241758554|ref|ZP_04756671.1| ribonuclease III [Neisseria flavescens SK114]
 gi|241321297|gb|EER57457.1| ribonuclease III [Neisseria flavescens SK114]
          Length = 239

 Score =  113 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/217 (29%), Positives = 110/217 (50%), Gaps = 6/217 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            ++KR+GY F N  LL++ALTH S      +  ER EF+GD IL   ++ +LF+ F    
Sbjct: 13  AIQKRLGYEFRNMELLQQALTHRSY---NAKHNERFEFVGDSILNYSVARMLFDAFPKLS 69

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EGELS    +LV+    +++A E+++   + + +   K       SI AD +E++ AA+ 
Sbjct: 70  EGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAVS 129

Query: 128 LDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
            D     A   V   + +R  ++     ++D+KT LQE   A+    P+Y++  ++    
Sbjct: 130 FDADFSAAEKVVRHLFAERVKRADLNIGKKDSKTALQEALQARRFALPKYRIEEQAEQTA 189

Query: 186 DPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
           D  F +  ++  L         S++ AEQ AA E L+
Sbjct: 190 DAMFVISCDLGELGFICNARGSSRKVAEQKAACEALE 226


>gi|109478606|ref|XP_001068155.1| PREDICTED: dicer 1, ribonuclease type III [Rattus norvegicus]
 gi|109479876|ref|XP_001069041.1| PREDICTED: dicer 1, ribonuclease type III [Rattus norvegicus]
 gi|149025439|gb|EDL81806.1| rCG20888 [Rattus norvegicus]
          Length = 1918

 Score =  113 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 95/252 (37%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1662 FENFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1721

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111
                G L+   ++LV+    + +A + D   + +  S     V                 
Sbjct: 1722 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1781

Query: 112  -------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                    D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1782 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1841

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1842 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1897

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1898 SAAARRALRSLK 1909



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1351 VSNCNLYRLGKKQG 1364


>gi|218131792|ref|ZP_03460596.1| hypothetical protein BACEGG_03413 [Bacteroides eggerthii DSM 20697]
 gi|217986095|gb|EEC52434.1| hypothetical protein BACEGG_03413 [Bacteroides eggerthii DSM 20697]
          Length = 301

 Score =  113 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             K +G+   N    ++AL H S S         + ERLEFLGD IL  ++  +++ HF+
Sbjct: 35  FYKILGFFPRNIRFYQQALLHKSTSVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFE 94

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET +++A E+ L   ++ S+           +    ++ ++  
Sbjct: 95  GRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSTRSSSHNSYMYGNAFEALIGAIYL 154

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
               +   +     + K +      S K        ++     K  V+ E         D
Sbjct: 155 DQGYERCKQFMEEKILKNYIDLDKMSRKEVNFKSKLIEWSQKNKMEVSFELIEQSLD-RD 213

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           ++P F   V I  L    G   SK+ ++Q AA   LK+  
Sbjct: 214 YNPMFHTEVLIENLPAGTGTGYSKKESQQNAAQMALKKIK 253


>gi|19553272|ref|NP_601274.1| ribonuclease III [Corynebacterium glutamicum ATCC 13032]
 gi|62390909|ref|YP_226311.1| ribonuclease III [Corynebacterium glutamicum ATCC 13032]
 gi|28201879|sp|Q8NNV6|RNC_CORGL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|21324844|dbj|BAB99467.1| dsRNA-specific ribonuclease [Corynebacterium glutamicum ATCC 13032]
 gi|41326248|emb|CAF20410.1| RIBONUCLEASE III [Corynebacterium glutamicum ATCC 13032]
          Length = 247

 Score =  113 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 4/225 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
            A+ +  L   +G     R LL  ALTH S ++      + ERLEFLGD +LGL ++  L
Sbjct: 19  DAVDHQPLLDHLGVDIQ-RDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLSVANKL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + S+ E ++S    S+VS    + +ARE+DL + I +             SI AD  
Sbjct: 78  YEQYPSSPESDVSKMRASIVSRYGLADIAREIDLGNHILLGKGELLTEGRSKDSILADTT 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+L  A++   G E A   + + +  +   +         +            P  + + 
Sbjct: 138 EALFGAIFRQHGFETARDVILRLFAYKIDNASARGIHQDWKTTLQEELAQRKRPMAEYSA 197

Query: 180 RS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            S GPDHD  FT +V + G    +G   +K+ AEQ AA +  ++ 
Sbjct: 198 TSVGPDHDLVFTAIVTLEGEEMGRGEGPNKKLAEQEAAHQAFRKL 242


>gi|116629437|ref|YP_814609.1| dsRNA-specific ribonuclease [Lactobacillus gasseri ATCC 33323]
 gi|238852587|ref|ZP_04642997.1| ribonuclease III [Lactobacillus gasseri 202-4]
 gi|282850853|ref|ZP_06260227.1| ribonuclease III [Lactobacillus gasseri 224-1]
 gi|311110915|ref|ZP_07712312.1| ribonuclease III [Lactobacillus gasseri MV-22]
 gi|116095019|gb|ABJ60171.1| RNAse III [Lactobacillus gasseri ATCC 33323]
 gi|238834733|gb|EEQ26960.1| ribonuclease III [Lactobacillus gasseri 202-4]
 gi|282557805|gb|EFB63393.1| ribonuclease III [Lactobacillus gasseri 224-1]
 gi|311066069|gb|EFQ46409.1| ribonuclease III [Lactobacillus gasseri MV-22]
          Length = 226

 Score =  113 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 4/212 (1%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57
           M ++ +   L+++ G  F N +LLE A THSS ++ +  ++ YE+LEFLGD +L L +S 
Sbjct: 1   MVSVAFKKNLKEKYGIKFNNENLLEDAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+ HF    EGEL+   +++V  E  S+ A E    + I +     K       ++  D
Sbjct: 61  YLYRHFPRLNEGELTRMRSNIVRTEGFSEFAIECGFPAEINLGKGEEKAGARKRKTLLED 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           V E+   AL+LD G+     F+         +             +      G       
Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQ 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                    P F V + ++    ++G   +K+
Sbjct: 181 VIAEDES-KPSFKVQLLVNDKKISEGQGRNKK 211


>gi|316975421|gb|EFV58865.1| putative RNase3 domain protein [Trichinella spiralis]
          Length = 1903

 Score =  113 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 86/247 (34%), Gaps = 27/247 (10%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLF 60
            +    S  E  IGY F +RSLL +ALTHS+   +   + Y+RLEFLGD +L  LI+  L+
Sbjct: 1648 NRFSLSQFEDIIGYRFKDRSLLVQALTHSTYFYNEVTDCYQRLEFLGDAVLDHLITRHLY 1707

Query: 61   NHFDSAKEGELSVRF-----------------------NSLVSAETCSQVARELDLASFI 97
                    G L+                          N +       +  R   L  ++
Sbjct: 1708 EDKRMHSPGMLTDLRSALYFMYLCPGLMMMIEKFVKTLNIIKENANFDREVRVHLLNLYL 1767

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
                +   +    +     D+ ES+  A+YLD G  +   +   Y   R           
Sbjct: 1768 LEGEEENAEEQVEVPKALGDIFESVAGAIYLDSGCSLHTVWCIYYNMLREEIEKCCLNPP 1827

Query: 158  KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
             + +++            K +       + +  V V + G     G   S R A+  AA 
Sbjct: 1828 ISPIRDLLEL---EPDRVKFSRVERNAVEGKVKVAVTVEGKGRFVGAGRSYRIAKSTAAK 1884

Query: 218  EVLKREG 224
              L+   
Sbjct: 1885 RALRYLK 1891


>gi|289662799|ref|ZP_06484380.1| ribonuclease III [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289670321|ref|ZP_06491396.1| ribonuclease III [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 227

 Score =  113 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 77/216 (35%), Positives = 105/216 (48%), Gaps = 6/216 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
             IG+AFA+ +LL +AL H S         ERLEFLGD I+ LLI+  L+  +  A EG 
Sbjct: 11  DLIGHAFADPALLAQALRHRSAG---TPHNERLEFLGDGIVNLLIAEALYQRWPKADEGA 67

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+     LV     + + R L+L   + +     K       SI AD VE+++AA+YLD 
Sbjct: 68  LTRARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDC 127

Query: 131 GIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           G E               AL  GK  +D KT LQEW  A+    P Y +   SG +H  +
Sbjct: 128 GFERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQ 187

Query: 189 FTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F V   +    A A+G   S+R AEQ AA  V+ + 
Sbjct: 188 FHVACILEQPTARAEGQGTSRRLAEQQAATLVIAQL 223


>gi|171463192|ref|YP_001797305.1| Ribonuclease III [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171192730|gb|ACB43691.1| Ribonuclease III [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 263

 Score =  113 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 68/204 (33%), Positives = 104/204 (50%), Gaps = 6/204 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++R+GY F    LL +ALTH S S    ++ ERLEFLGD IL  +++ +L+  +    E
Sbjct: 12  LQERLGYTFKKPELLNQALTHRSHSK---KNNERLEFLGDSILNCVVAEMLYERYSDLDE 68

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +   ++A+ L L+ ++R+     K       SI AD +E++  A++L
Sbjct: 69  GDLSRVRANLVKQQALYEIAQTLSLSDYLRLGEGELKSGGFRRPSILADTLEAVTGAIFL 128

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           DGG E A T + K +             +D KT LQE   +     P Y VT  +G  H+
Sbjct: 129 DGGFEAAKTSLRKLYSIILAHVDPKTLGKDDKTLLQECLQSYQLPLPAYNVTGTTGAAHN 188

Query: 187 PRFTVVVEISGLAPA-QGMDCSKR 209
            +F V   I     A +G   S+R
Sbjct: 189 QQFEVECLIPSHKVAVKGEGASRR 212


>gi|163840519|ref|YP_001624924.1| ribonuclease III [Renibacterium salmoninarum ATCC 33209]
 gi|162953995|gb|ABY23510.1| ribonuclease III [Renibacterium salmoninarum ATCC 33209]
          Length = 273

 Score =  113 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 72/218 (33%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
             + L KR+G    +   L  ALTH S ++      + ERLEFLGD +LGL ++  L+  
Sbjct: 21  NSAELLKRLGVDI-DAGTLRLALTHRSFAYENGGIPTNERLEFLGDSVLGLSVTDALYRD 79

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                EGEL+ R +++VS    + VAREL +  FI +             SI AD +E+L
Sbjct: 80  NPGLAEGELAKRRSAVVSTRALAGVARELGVGEFILLGQGELLTDGKNKASILADTMEAL 139

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
             A Y+   IE A   V +          +     D KT +QE A  +      Y+VT +
Sbjct: 140 FGAAYICNDIETARQMVMRLVGPLLADAGNFGAATDWKTNIQEHAANRQLGPVRYEVTGQ 199

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
            GPDH   +  ++ I G +   G   SK+ AEQ AAA 
Sbjct: 200 -GPDHARTYQALLWIGGTSYQSGRGHSKKEAEQDAAAN 236


>gi|58581478|ref|YP_200494.1| ribonuclease III [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623408|ref|YP_450780.1| ribonuclease III [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|75435762|sp|Q5H1R2|RNC_XANOR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|58426072|gb|AAW75109.1| ribonuclease III [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367348|dbj|BAE68506.1| ribonuclease III [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 226

 Score =  113 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 76/214 (35%), Positives = 105/214 (49%), Gaps = 6/214 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+  LL +AL H S         ERLEFLGD I+ LL++  L+  +  A EG L+
Sbjct: 12  IGHAFADPDLLAQALRHRSAG---TPHNERLEFLGDGIVNLLVAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E               AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   +   +A A+G   S+R AEQ AA  V+ + 
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222


>gi|295698532|ref|YP_003603187.1| ribonuclease III [Candidatus Riesia pediculicola USDA]
 gi|291157177|gb|ADD79622.1| ribonuclease III [Candidatus Riesia pediculicola USDA]
          Length = 227

 Score =  113 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 110/224 (49%), Gaps = 12/224 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+K IGY F +   L ++LTH S   +     ERLEFLGD IL L+IS  L++ F S  E
Sbjct: 2   LQKNIGYRFNHLDFLYQSLTHRS---TNLSHNERLEFLGDSILNLIISKFLYDEFLSKNE 58

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GE+S   ++LV   T S +A +L + SFI +     K+      SI ++ +E++I A++L
Sbjct: 59  GEMSRTRSNLVKEGTLSDIANQLGIGSFINLGLGEIKNHGFLKRSILSNALEAIIGAIFL 118

Query: 129 DGGIEVAGTFVDKYWKQRAL----KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           D G  +           R         +  +D KT+LQE         P+Y++    G D
Sbjct: 119 DSGSNIKTIENVIMNWYRNHADLINLSRDEKDPKTKLQEHLQKFHLPLPKYELLKSVGYD 178

Query: 185 HDPRFTVVVEISGL-----APAQGMDCSKRAAEQVAAAEVLKRE 223
           H+ +FT+V ++ G          G     + AE++AA  +  + 
Sbjct: 179 HEKQFTIVCKVFGFRKSDHFITIGTGKKYKEAEKLAAKHMFDKI 222


>gi|229815433|ref|ZP_04445765.1| hypothetical protein COLINT_02481 [Collinsella intestinalis DSM
           13280]
 gi|229808966|gb|EEP44736.1| hypothetical protein COLINT_02481 [Collinsella intestinalis DSM
           13280]
          Length = 241

 Score =  113 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 73/208 (35%), Positives = 106/208 (50%), Gaps = 3/208 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
           + +  ++  G+ F +  LL  A+TH S         SYERLEFLGD ILG +++  LF  
Sbjct: 6   KLALAQEICGHEFTDVQLLRSAITHPSAVEGEPVSASYERLEFLGDSILGSIVALSLFKT 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           + +  EG+L+    SLVS  T S+V  EL +   I + +  +      M S   +V E+L
Sbjct: 66  YGAFDEGKLTRLKVSLVSGATLSEVGLELGIDKIIILGASEQGTGARGMHSALENVYEAL 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           I ALYLDGG +VA  F+ +  K   A +  +   + K+ LQE   +     P YKV    
Sbjct: 126 IGALYLDGGWDVAEAFITRTLKPHLADERAEHPSNPKSYLQECVQSDRMDPPAYKVIGED 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           GP H P FT V  + G+   +G   SK+
Sbjct: 186 GPAHQPTFTAVALVDGIRRGRGTGSSKK 213


>gi|282856664|ref|ZP_06265932.1| ribonuclease III [Pyramidobacter piscolens W5455]
 gi|282585513|gb|EFB90813.1| ribonuclease III [Pyramidobacter piscolens W5455]
          Length = 231

 Score =  113 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 74/207 (35%), Positives = 106/207 (51%), Gaps = 9/207 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
                ++RIGY F++ +LLE+ALTHSS +H        ERLEFLGD +L +LIS  LF  
Sbjct: 11  DLLEFQRRIGYEFSDPALLEEALTHSSYAHERGVPFWNERLEFLGDAVLEVLISEELFRA 70

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A EG+++    SLV  E  S     L L     +         S   ++  D VE+L
Sbjct: 71  RPDASEGQMTRERASLVREEVLSAWGHSLGL---DGLLLLGMGQRGSASENMIGDAVEAL 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I ALYLDGG+E A  F+++    R   + + + D K+ LQ     + G  P Y++  R G
Sbjct: 128 IGALYLDGGLEQARAFLNR----RPRGAAREQLDPKSRLQILCQERNGPAPYYELLERKG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           P+HDP F     + G   A+G   S++
Sbjct: 184 PEHDPIFIARALLDGRELARGRGTSRK 210


>gi|315104262|gb|EFT76238.1| ribonuclease III [Propionibacterium acnes HL050PA2]
 gi|315106730|gb|EFT78706.1| ribonuclease III [Propionibacterium acnes HL030PA1]
          Length = 265

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 38  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  ++AR+L +   I++     +      TSI AD  E+L+
Sbjct: 97  PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 157 GAVELSAGLPNVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253


>gi|161621795|ref|YP_056158.2| ribonuclease III [Propionibacterium acnes KPA171202]
          Length = 246

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 19  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 77

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  ++AR+L +   I++     +      TSI AD  E+L+
Sbjct: 78  PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 137

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 138 GAVELSAGLPNVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 196

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 197 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 234


>gi|50840533|gb|AAT83200.1| ribonuclease III [Propionibacterium acnes KPA171202]
          Length = 366

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 139 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 197

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  ++AR+L +   I++     +      TSI AD  E+L+
Sbjct: 198 PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 257

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 258 GAVELSAGLPNVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 316

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 317 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 354


>gi|313819677|gb|EFS57391.1| ribonuclease III [Propionibacterium acnes HL046PA2]
 gi|313822217|gb|EFS59931.1| ribonuclease III [Propionibacterium acnes HL036PA1]
 gi|313823550|gb|EFS61264.1| ribonuclease III [Propionibacterium acnes HL036PA2]
 gi|314924611|gb|EFS88442.1| ribonuclease III [Propionibacterium acnes HL036PA3]
 gi|314962025|gb|EFT06126.1| ribonuclease III [Propionibacterium acnes HL002PA2]
 gi|315087196|gb|EFT59172.1| ribonuclease III [Propionibacterium acnes HL002PA3]
          Length = 265

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 38  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  Q+AR+L +   I++     +      TSI AD  E+L+
Sbjct: 97  PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253


>gi|313807892|gb|EFS46373.1| ribonuclease III [Propionibacterium acnes HL087PA2]
 gi|313825876|gb|EFS63590.1| ribonuclease III [Propionibacterium acnes HL063PA1]
 gi|314986461|gb|EFT30553.1| ribonuclease III [Propionibacterium acnes HL005PA2]
 gi|314990820|gb|EFT34911.1| ribonuclease III [Propionibacterium acnes HL005PA3]
 gi|315083515|gb|EFT55491.1| ribonuclease III [Propionibacterium acnes HL027PA2]
 gi|327329789|gb|EGE71545.1| ribonuclease III [Propionibacterium acnes HL096PA3]
 gi|327446474|gb|EGE93128.1| ribonuclease III [Propionibacterium acnes HL013PA2]
 gi|328752230|gb|EGF65846.1| ribonuclease III [Propionibacterium acnes HL020PA1]
          Length = 265

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 38  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  Q+AR+L +   I++     +      TSI AD  E+L+
Sbjct: 97  PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253


>gi|313763647|gb|EFS35011.1| ribonuclease III [Propionibacterium acnes HL013PA1]
 gi|313773586|gb|EFS39552.1| ribonuclease III [Propionibacterium acnes HL074PA1]
 gi|313794040|gb|EFS42064.1| ribonuclease III [Propionibacterium acnes HL110PA1]
 gi|313801428|gb|EFS42679.1| ribonuclease III [Propionibacterium acnes HL110PA2]
 gi|313811637|gb|EFS49351.1| ribonuclease III [Propionibacterium acnes HL083PA1]
 gi|313813554|gb|EFS51268.1| ribonuclease III [Propionibacterium acnes HL025PA1]
 gi|313816825|gb|EFS54539.1| ribonuclease III [Propionibacterium acnes HL059PA1]
 gi|313829556|gb|EFS67270.1| ribonuclease III [Propionibacterium acnes HL063PA2]
 gi|313831378|gb|EFS69092.1| ribonuclease III [Propionibacterium acnes HL007PA1]
 gi|313834990|gb|EFS72704.1| ribonuclease III [Propionibacterium acnes HL056PA1]
 gi|313839852|gb|EFS77566.1| ribonuclease III [Propionibacterium acnes HL086PA1]
 gi|314914649|gb|EFS78480.1| ribonuclease III [Propionibacterium acnes HL005PA4]
 gi|314919238|gb|EFS83069.1| ribonuclease III [Propionibacterium acnes HL050PA1]
 gi|314920852|gb|EFS84683.1| ribonuclease III [Propionibacterium acnes HL050PA3]
 gi|314930530|gb|EFS94361.1| ribonuclease III [Propionibacterium acnes HL067PA1]
 gi|314957411|gb|EFT01514.1| ribonuclease III [Propionibacterium acnes HL002PA1]
 gi|314963605|gb|EFT07705.1| ribonuclease III [Propionibacterium acnes HL082PA1]
 gi|314968563|gb|EFT12661.1| ribonuclease III [Propionibacterium acnes HL037PA1]
 gi|314974253|gb|EFT18349.1| ribonuclease III [Propionibacterium acnes HL053PA1]
 gi|314976742|gb|EFT20837.1| ribonuclease III [Propionibacterium acnes HL045PA1]
 gi|314984443|gb|EFT28535.1| ribonuclease III [Propionibacterium acnes HL005PA1]
 gi|315079459|gb|EFT51452.1| ribonuclease III [Propionibacterium acnes HL053PA2]
 gi|315081314|gb|EFT53290.1| ribonuclease III [Propionibacterium acnes HL078PA1]
 gi|315095393|gb|EFT67369.1| ribonuclease III [Propionibacterium acnes HL038PA1]
 gi|315099274|gb|EFT71250.1| ribonuclease III [Propionibacterium acnes HL059PA2]
 gi|315100492|gb|EFT72468.1| ribonuclease III [Propionibacterium acnes HL046PA1]
 gi|315109074|gb|EFT81050.1| ribonuclease III [Propionibacterium acnes HL030PA2]
 gi|327328345|gb|EGE70107.1| ribonuclease III [Propionibacterium acnes HL096PA2]
 gi|327334306|gb|EGE76020.1| ribonuclease III [Propionibacterium acnes HL097PA1]
 gi|327444129|gb|EGE90783.1| ribonuclease III [Propionibacterium acnes HL043PA2]
 gi|327444991|gb|EGE91645.1| ribonuclease III [Propionibacterium acnes HL043PA1]
 gi|327451940|gb|EGE98594.1| ribonuclease III [Propionibacterium acnes HL092PA1]
 gi|327455025|gb|EGF01680.1| ribonuclease III [Propionibacterium acnes HL087PA3]
 gi|327457687|gb|EGF04342.1| ribonuclease III [Propionibacterium acnes HL083PA2]
 gi|328755143|gb|EGF68759.1| ribonuclease III [Propionibacterium acnes HL087PA1]
 gi|328758079|gb|EGF71695.1| ribonuclease III [Propionibacterium acnes HL025PA2]
 gi|328760097|gb|EGF73676.1| ribonuclease III [Propionibacterium acnes HL099PA1]
          Length = 265

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 38  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  Q+AR+L +   I++     +      TSI AD  E+L+
Sbjct: 97  PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253


>gi|289426387|ref|ZP_06428130.1| ribonuclease III [Propionibacterium acnes SK187]
 gi|289428762|ref|ZP_06430445.1| ribonuclease III [Propionibacterium acnes J165]
 gi|295130991|ref|YP_003581654.1| ribonuclease III [Propionibacterium acnes SK137]
 gi|289153115|gb|EFD01833.1| ribonuclease III [Propionibacterium acnes SK187]
 gi|289158160|gb|EFD06380.1| ribonuclease III [Propionibacterium acnes J165]
 gi|291376694|gb|ADE00549.1| ribonuclease III [Propionibacterium acnes SK137]
 gi|332675870|gb|AEE72686.1| ribonuclease III [Propionibacterium acnes 266]
          Length = 246

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 19  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 77

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  Q+AR+L +   I++     +      TSI AD  E+L+
Sbjct: 78  PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 137

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 138 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 196

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 197 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 234


>gi|148829108|gb|ABR14013.1| Dicer-1 [Penaeus monodon]
          Length = 2473

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 85/247 (34%), Gaps = 28/247 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E++IGY F +RS L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2217 YQVFEEKIGYTFRDRSYLLQAFTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 2276

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A + D   + R  S     V      +Q +    +  
Sbjct: 2277 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINE 2336

Query: 125  ALYLDGGIEVAGTFVDKYWK------------------------QRALKSGKFRRDAKTE 160
              Y     E       +  K                             +   R   +  
Sbjct: 2337 EYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCREIEQFS 2396

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDH---DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
                      +      T + G      D +  V VEI G     G+  + R A+  AA 
Sbjct: 2397 GVVPKSPIRELLEMEPETAKFGKPERLVDGKVRVSVEIFGKGSFSGVGRNYRIAKSTAAK 2456

Query: 218  EVLKREG 224
              L+   
Sbjct: 2457 RALRHLK 2463



 Score = 41.8 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 2/98 (2%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              + +   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +    EG+
Sbjct: 1953 DLLNHPGPSPSVILQALTMSNANDGV--NLERLETIGDSFLKYAITTFLYCTYPQRHEGK 2010

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
            LS   +  VS     ++ +   L   +  +     D  
Sbjct: 2011 LSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNW 2048


>gi|42519393|ref|NP_965323.1| ribonuclease III [Lactobacillus johnsonii NCC 533]
 gi|81667674|sp|Q74IP8|RNC_LACJO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|41583681|gb|AAS09289.1| ribonuclease III [Lactobacillus johnsonii NCC 533]
 gi|329667082|gb|AEB93030.1| ribonuclease III [Lactobacillus johnsonii DPC 6026]
          Length = 226

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 4/212 (1%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57
           M ++ +   L+K+ G  F N  LLE A THSS ++ +  ++ YE+LEFLGD +L L +S 
Sbjct: 1   MVSVAFKQNLKKKYGIKFNNEKLLEDAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+ HF    EGEL+   +++V  E  S+ A E      I +     K       ++  D
Sbjct: 61  YLYRHFPRLNEGELTRMRSNIVRTEGFSEFAIECGFPEEINLGKGEEKAGARKRKTLLED 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           V E+   AL+LD G+     F+         +             +      G       
Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQ 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                    P F V + ++G   ++G   +K+
Sbjct: 181 VISEDES-KPSFKVQLLVNGEKVSEGQGRNKK 211


>gi|313836649|gb|EFS74363.1| ribonuclease III [Propionibacterium acnes HL037PA2]
 gi|314928156|gb|EFS91987.1| ribonuclease III [Propionibacterium acnes HL044PA1]
 gi|314972155|gb|EFT16252.1| ribonuclease III [Propionibacterium acnes HL037PA3]
 gi|328907982|gb|EGG27742.1| ribonuclease III [Propionibacterium sp. P08]
          Length = 259

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           + TL + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 32  FLTLLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 90

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  Q+AR L +   +++     +      TSI AD  E+L+
Sbjct: 91  PDKPEGQLAKLRSAVVSTVSLGQLARRLGIGPQVKLGRGEERTGGHDKTSILADTTEALL 150

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+  A   V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 151 GAVELSSGLPDALRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 209

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 210 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 247


>gi|283827860|gb|ADB44075.1| dicer-1 [Marsupenaeus japonicus]
          Length = 2482

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 85/247 (34%), Gaps = 28/247 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E++IGY F +RS L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2226 YQVFEEKIGYTFQDRSYLLQAFTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 2285

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A + D   + R  S     V      +Q +    +  
Sbjct: 2286 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINE 2345

Query: 125  ALYLDGGIEVAGTFVDKYWK------------------------QRALKSGKFRRDAKTE 160
              Y     E       +  K                             +   R   +  
Sbjct: 2346 EYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCREIEQFS 2405

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDH---DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
                      +      T + G      D +  V VEI G     G+  + R A+  AA 
Sbjct: 2406 GVVPKSPIRELLEMEPETAKFGKPERLVDGKVRVSVEIFGKGSFSGVGRNYRIAKSTAAK 2465

Query: 218  EVLKREG 224
              L+   
Sbjct: 2466 RALRHLK 2472



 Score = 41.8 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 2/98 (2%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              + +   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +    EG+
Sbjct: 1962 DLLNHPGPSPSVILQALTMSNANDGV--NLERLETIGDSFLKYAITTFLYCTYPQRHEGK 2019

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
            LS   +  VS     ++ +   L   +  +     D  
Sbjct: 2020 LSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNW 2057


>gi|9632031|ref|NP_048820.1| hypothetical protein PBCV1_A464R [Paramecium bursaria Chlorella
           virus 1]
 gi|2500556|sp|Q98514|A464_PBCV1 RecName: Full=Putative protein A464R
 gi|1620135|gb|AAC96831.1| similar to Bacillus ribonuclease III, corresponds to Swiss-Prot
           Accession Number P51833 [Paramecium bursaria Chlorella
           virus 1]
          Length = 275

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFD 64
             +E  IG    + S  + A    S +     + +YER+EF+GD +LG +I+  L+++F 
Sbjct: 52  EDVEYLIGMPIIDFSYYKTAF---SYNAIVEGEATYERMEFVGDSVLGFIIARYLYDNFP 108

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG LS      VS +  S +A  + L +++ +         +    I  DV E+L+ 
Sbjct: 109 GKDEGFLSRLRTKFVSGKFLSSIALRMGLHNYVIMHQKGLYRGWNTNPRILEDVFEALMG 168

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+Y D GI  A  F      + A            +       K  +     V+      
Sbjct: 169 AIYFDLGINAAKQFFMTTLAKYADMQSLMLDTNYKDRLLKHTRKVELPRPEFVSVFEKGG 228

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            +P F V V I+G   + G   S++ AEQ A+   L   G+
Sbjct: 229 ANPSFIVDVVINGQKISTGTGKSRKDAEQNASKIALHTMGV 269


>gi|268319230|ref|YP_003292886.1| ribonuclease III [Lactobacillus johnsonii FI9785]
 gi|262397605|emb|CAX66619.1| ribonuclease III [Lactobacillus johnsonii FI9785]
          Length = 226

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 4/212 (1%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57
           M ++ +   L+K+ G  F N  LLE A THSS ++ +  ++ YE+LEFLGD +L L +S 
Sbjct: 1   MVSVAFKQNLKKKYGIKFNNEKLLENAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+ HF    EGEL+   +++V  E  S+ A E      I +     K       ++  D
Sbjct: 61  YLYRHFPRLNEGELTRMRSNIVRTEGFSEFAIECGFPEEIDLGKGEEKAGARKRKTLLED 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           V E+   AL+LD G+     F+         +             +      G       
Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQ 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                    P F V + ++G   ++G   +K+
Sbjct: 181 VISEDES-KPSFKVQLLVNGEKVSEGQGRNKK 211


>gi|298291621|ref|YP_003693560.1| ribonuclease III [Starkeya novella DSM 506]
 gi|296928132|gb|ADH88941.1| ribonuclease III [Starkeya novella DSM 506]
          Length = 243

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 86/208 (41%), Positives = 121/208 (58%), Gaps = 6/208 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI------SHSYQESYERLEFLGDRILGLLISTLL 59
              LE  +G+ FA+R+ L  ALTH S       S +   SY+RLEFLGD +LGL++S +L
Sbjct: 18  LDALEAALGHRFASRAHLRLALTHISSVTGAQGSQARVRSYQRLEFLGDHVLGLVVSDML 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +A+EGELS R   LV  E C++VAR +DL  +IR+     +       +I ADV 
Sbjct: 78  YRAYPNAEEGELSRRLADLVCEEACAEVARAMDLGPYIRLGPGEDRTGGRERPAILADVA 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+++AA+YLD G E A   V+K+W+ R    G   RD KT LQEWA  +    P Y++  
Sbjct: 138 EAVLAAVYLDAGFEAAEAMVEKFWRPRLSTPGSSARDPKTALQEWAQGRGLPPPHYRLVE 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           RSGPDH+P F + VE+ G    +    S
Sbjct: 198 RSGPDHNPEFRIAVELPGYTAIEATGPS 225


>gi|160903376|ref|YP_001568957.1| ribonuclease III [Petrotoga mobilis SJ95]
 gi|160361020|gb|ABX32634.1| Ribonuclease III [Petrotoga mobilis SJ95]
          Length = 253

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 69/210 (32%), Positives = 99/210 (47%), Gaps = 9/210 (4%)

Query: 21  SLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           S+L +AL H S     +      +S ERLEFLGD +L  L+ +    +     EGE+S  
Sbjct: 33  SVLFEALCHKSYVFDNENIQRKLDSNERLEFLGDAVLE-LVISEFLYNNYHLSEGEMSKA 91

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
              + S    ++VA +L L  FI +S    K       SI +D +E+L A +YL  G E 
Sbjct: 92  RAIIGSEIILAEVALKLRLDDFIFLSKGEDKQGGRTKKSILSDTMEALFACIYLSCGYEK 151

Query: 135 AGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           A  ++ K  K+       G    D KT+LQE    K    PEY +   SGP H  R+ V 
Sbjct: 152 AKKYIIKNMKEYIENAVEGNIFLDYKTKLQELTQEKTKKLPEYVLLSASGPSHMKRYKVA 211

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V++       G   SK+ AEQ+AA    ++
Sbjct: 212 VKLDDEILGIGEGFSKKFAEQLAAKIACEK 241


>gi|21242078|ref|NP_641660.1| ribonuclease III [Xanthomonas axonopodis pv. citri str. 306]
 gi|24212270|sp|Q8PMV0|RNC_XANAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|21107485|gb|AAM36196.1| ribonuclease III [Xanthomonas axonopodis pv. citri str. 306]
          Length = 226

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 77/214 (35%), Positives = 107/214 (50%), Gaps = 6/214 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+ +LL +AL H S         ERLEFLGD I+ LLI+  L++ +  A EG L+
Sbjct: 12  IGHAFADPALLAQALRHRSAG---TPHNERLEFLGDGIVNLLIAEALYHRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E               AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFH 188

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   +   +A A+G   S+R AEQ AA  V+ + 
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222


>gi|148907962|gb|ABR17101.1| unknown [Picea sitchensis]
          Length = 685

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 32/249 (12%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    LE+ +GY F+ + LL +A  H S +      Y+RLEFLGD +L  +I++ L++ +
Sbjct: 220 IDIDELERLLGYNFSYKGLLLEAFAHPSFNEHNGGCYQRLEFLGDAVLDYIITSYLYSVY 279

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV----------------------SS 101
              K G L+   +  V+ E+ + VA    L  ++                          
Sbjct: 280 PDMKPGYLTDMRSMTVNNESFACVAVRHGLYMYLIQKSDSLSSAVTKYVDFMKALFTADR 339

Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKTE 160
           D   +       +  D+VES   AL +D G ++     +     Q  +           E
Sbjct: 340 DSCDEPEPKCPKVLGDIVESFAGALVIDTGFDLDCVWKLMLNILQPIVTPETLCLQPVRE 399

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-----AQGMDCSKRAAEQVA 215
           L E            K +  +G      + V  ++SG          G   S + A++VA
Sbjct: 400 LSEVCQHHNLTLDYVKASKGNGNG----YLVEAKVSGKKVSGSVGGTGTRTSIKDAKKVA 455

Query: 216 AAEVLKREG 224
           + + L +  
Sbjct: 456 SKDALLKLK 464



 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 6/166 (3%)

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F+S+         +   ++E        L   S       L         S      E
Sbjct: 511 PKFNSSPASCSRDLHSVRSTSELIPPCMASLQKNSSTVCEQPLLPLATENDMSSTNQNQE 570

Query: 121 SLIAALYLDGGIEVAGTFVDKYWK-QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +       D   ++      ++          +F   AK+ L E+   K    P +    
Sbjct: 571 AYKEYTNSDHHYDITNKTEYQWPSASWDTDIDQFLGSAKSSLNEFCQKKSWEVPSWVCYQ 630

Query: 180 RSGPDHDPRFT--VVVEISGLAPAQGMD---CSKRAAEQVAAAEVL 220
             G  H   FT   V+ + G    + +     +KR A + A+   L
Sbjct: 631 EEGMPHQKSFTYMAVLRLPGNISIECLGEPMKNKRLAMESASRGAL 676



 Score = 36.4 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 63/187 (33%), Gaps = 10/187 (5%)

Query: 8   TLEKRIGYAFANRSLL-----EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            L++ +  +F   SL+      +A+T       +  S ERLE LGD  L   +S  LF  
Sbjct: 13  ELKELLTASFPEGSLVTASRVLEAITTERCMEGF--SLERLEVLGDAFLKYAVSRRLFLV 70

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---VSSDLRKDVCSFMTSIQADVV 119
           +D   EG+L+ + ++ +      + A+     ++IR           +     ++    +
Sbjct: 71  YDKLDEGQLTKKRSNAIKNSNLYKRAKGKGFPAYIRDEYFDPKQYFALGRPCKNVCTPEL 130

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
             +I     D  +        K  K+      K   D    L        G         
Sbjct: 131 VHMIHYFEGDNTMTDTDFTSVKCTKRHHWLHMKTIADVVEALIGAYLVDSGFGAALAFLK 190

Query: 180 RSGPDHD 186
             G + D
Sbjct: 191 WIGIEID 197


>gi|78186018|ref|YP_374061.1| ribonuclease III [Chlorobium luteolum DSM 273]
 gi|90101633|sp|Q3B6L3|RNC_PELLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78165920|gb|ABB23018.1| RNAse III [Chlorobium luteolum DSM 273]
          Length = 276

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 66/212 (31%), Positives = 94/212 (44%), Gaps = 10/212 (4%)

Query: 21  SLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            L   ALTH S+ H         S +RLEFLGD +LGL+IS  L+  F    EGELS   
Sbjct: 46  ELYATALTHRSMVHDTTAPEITRSNQRLEFLGDSVLGLIISEYLYRRFPEGTEGELSSYR 105

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE-- 133
             +V+ ++ +  AR LDL   + +     +      TS  AD  E+L  A+YLD G++  
Sbjct: 106 AKIVNGKSLAGFARNLDLGIHLIIGESADQQRIRTSTSTLADAFEALTGAIYLDRGLDAV 165

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
                                 + K+ L E   +     P Y V    G +H+  FT+ V
Sbjct: 166 REFIEEQIIDSPAFEAMVSTENNHKSRLIEHTQSHQLPPPVYTVLSEEGAEHEKTFTIEV 225

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAE---VLKR 222
             +G    +G    K+ AEQ+AA E    L+R
Sbjct: 226 SCNGRRLGRGTALRKKDAEQLAAEEAMGALER 257


>gi|227890258|ref|ZP_04008063.1| ribonuclease III [Lactobacillus johnsonii ATCC 33200]
 gi|227849072|gb|EEJ59158.1| ribonuclease III [Lactobacillus johnsonii ATCC 33200]
          Length = 226

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 4/212 (1%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57
           M ++ +   L+K+ G  F N  LLE A THSS ++ +  ++ YE+LEFLGD +L L +S 
Sbjct: 1   MVSVAFKQNLKKKYGIKFNNEKLLEDAFTHSSYANEHSGRKDYEKLEFLGDAVLELAVSD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+ HF    EGEL+   +++V  E  S+ A E      I +     K       ++  D
Sbjct: 61  YLYRHFPRLNEGELTRMRSNIVRTEGFSEFAIECGFPEEIDLGKGEEKAGARKRKTLLED 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           V E+   AL+LD G+     F+         +             +      G       
Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQ 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                    P F V + ++G   ++G   +K+
Sbjct: 181 VISEDES-KPSFKVQLLVNGEKVSEGQGRNKK 211


>gi|297571639|ref|YP_003697413.1| ribonuclease III [Arcanobacterium haemolyticum DSM 20595]
 gi|296931986|gb|ADH92794.1| ribonuclease III [Arcanobacterium haemolyticum DSM 20595]
          Length = 235

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 4/226 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLL 59
           M     S L    G    +  LL  ALTH S +  ++  + ERLEF+GD ILG +++  +
Sbjct: 1   MHEQDRSPLLDAWGVEIPD-ELLTLALTHRSWAFEHECGNNERLEFMGDSILGAVVAEQI 59

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F+ +    EGELS   ++ VS    + +AR L+L ++IR+     +       SI AD V
Sbjct: 60  FHDYPEKSEGELSKIKSAAVSERALAGIARGLNLGAYIRLGKGEERTGGRDKDSILADTV 119

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E+LIAA Y  GG+ V  + V  +   + +++ +     D +T ++E A            
Sbjct: 120 EALIAATYEAGGLRVVISTVRHHLHAKIIEATQMGPALDWRTGMEEKARELGIAGELSYT 179

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDH   +T  V I      +G   S++A++  A  +   R 
Sbjct: 180 IVGEGPDHAKVYTARVFIGETEWGRGDATSRKASKLAACKDAYYRL 225


>gi|296283699|ref|ZP_06861697.1| ribonuclease III [Citromicrobium bathyomarinum JL354]
          Length = 223

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 80/211 (37%), Positives = 116/211 (54%), Gaps = 2/211 (0%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           G+A  + +L  +ALTH S+       Y+RLEFLGDR+LGL I+  LF + +SA EG L+ 
Sbjct: 15  GFAARDEALWNEALTHGSLGEG--RDYQRLEFLGDRVLGLAIAEWLFENQNSASEGTLAQ 72

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           R N+LVS   C++VAR + +   +R+    R+D  +  ++I  DV+ESL+ A   + G E
Sbjct: 73  RLNALVSKGACAKVARSIGVPDHLRLGRQAREDGGAQSSNILGDVMESLLGAQLREDGFE 132

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
            A   V   W+          +  K+ LQEWA       PEY +  RSGPDH  RFTV V
Sbjct: 133 SARALVRALWRDAVEGDAGRAKHPKSALQEWAAGNRRRPPEYALIDRSGPDHAARFTVRV 192

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            +  +  A+    SK+ AE  AA   +++ G
Sbjct: 193 SVKNVGDAEATANSKQEAETAAAKAFMEQYG 223


>gi|119713398|gb|ABL97460.1| ribonuclease III [uncultured marine bacterium HF130_81H07]
          Length = 220

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 8/225 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+   +  LEK +GY+F  +  L KALTH S S     + E  EFLGD +L L+IS +L 
Sbjct: 1   MNK-DFKKLEKNLGYSFQKKETLVKALTHVSKSKE---NNEVFEFLGDSVLNLIISQILV 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG LS+  + LVS  T +++A++L+L SFI               +I  + +E
Sbjct: 57  EKFSMDDEGTLSLMRSKLVSRTTLNKIAKKLELDSFIV--KGDSLAGQETPENILGNSLE 114

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++  A+Y + G+E     ++  + +      +      ++     + +            
Sbjct: 115 AIFGAVYKESGLEFIQKIIETTFAKEIELLREGNLK-NSKTLLQEYCQKNKFSLPTYNQI 173

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              ++   F V  ++   + ++G   S + AEQ AAA +LK+ G+
Sbjct: 174 EKKENIYPFIVTCKLDDSS-SEGFGKSLKLAEQDAAARLLKKIGV 217


>gi|166712833|ref|ZP_02244040.1| ribonuclease III [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 226

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 76/214 (35%), Positives = 106/214 (49%), Gaps = 6/214 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+ +LL +AL H S         ERLEFLGD I+ LL++  L+  +  A EG L+
Sbjct: 12  IGHAFADPALLAQALRHRSAG---TPHNERLEFLGDGIVNLLVAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E               AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKPEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   +   +A A+G   S+R AEQ AA  V+ + 
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222


>gi|323702685|ref|ZP_08114346.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574]
 gi|323532348|gb|EGB22226.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574]
          Length = 204

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 69/187 (36%), Positives = 90/187 (48%), Gaps = 2/187 (1%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             +RLEFLGD +L LLIS  L+  F    EGEL+    + V   + ++VAR LDL   +R
Sbjct: 3   HNQRLEFLGDAVLELLISEYLYQRFPDRTEGELTKMRAASVCEPSLAKVARGLDLGRCLR 62

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRD 156
           +     +       SI AD  E+L+ A+YLD G+E A  FV +            +  RD
Sbjct: 63  MGRGEERSGGRERPSILADAFEALLGAIYLDHGLEAARKFVLEQLNPIITDVVAGRLDRD 122

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            KTELQE           Y +   +GPDHD  FT  V   G    QG   SK+ AEQ AA
Sbjct: 123 YKTELQERLQQNSPDPVSYVIMKETGPDHDKVFTAGVIYRGQIIGQGSGHSKKEAEQQAA 182

Query: 217 AEVLKRE 223
            +   R 
Sbjct: 183 KDAFNRL 189


>gi|225075386|ref|ZP_03718585.1| hypothetical protein NEIFLAOT_00391 [Neisseria flavescens
           NRL30031/H210]
 gi|224953204|gb|EEG34413.1| hypothetical protein NEIFLAOT_00391 [Neisseria flavescens
           NRL30031/H210]
          Length = 239

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 11/229 (4%)

Query: 1   MSALRYST-----LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55
           M            ++KR+GY F N  LL++ALTH S      +  ER EF+GD IL   +
Sbjct: 1   MKPDLLKKQAHRSIQKRLGYEFRNMELLQQALTHRSY---NAKHNERFEFVGDSILNYSV 57

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           + +LF+ F    EGELS    +LV+    +++A E+++   + + +   K       SI 
Sbjct: 58  ARMLFDAFPKLSEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSIL 117

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTP 173
           AD +E++ AA+  D     A   V   + +R  ++     ++D+KT LQE   A+    P
Sbjct: 118 ADAMEAMFAAVSFDADFSAAEKVVRHLFAERVKRADLNIGKKDSKTALQEALQARRFALP 177

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
           +Y++  ++    D  F +  ++  L         S++ AEQ AA E L+
Sbjct: 178 KYRIEEQAEQTADAMFVISCDLGELGFICNARGSSRKVAEQKAACEALE 226


>gi|71051733|gb|AAH98796.1| Dicer1 protein [Rattus norvegicus]
          Length = 401

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 37/252 (14%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 145 FENFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 204

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
               G L+   ++LV+    + +A + D   +                            
Sbjct: 205 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 264

Query: 98  -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 265 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 324

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 325 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVELVGKGKFKGVGRSYRIAK 380

Query: 213 QVAAAEVLKREG 224
             AA   L+   
Sbjct: 381 SAAARRALRSLK 392


>gi|314978880|gb|EFT22974.1| ribonuclease III [Propionibacterium acnes HL072PA2]
 gi|315089369|gb|EFT61345.1| ribonuclease III [Propionibacterium acnes HL072PA1]
          Length = 265

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 38  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +   +AR+L +   I++     +      TSI AD  E+L+
Sbjct: 97  PDKPEGQLAKLRSAVVSTVSLGLLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253


>gi|218195189|gb|EEC77616.1| hypothetical protein OsI_16596 [Oryza sativa Indica Group]
          Length = 1576

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 90/245 (36%), Gaps = 24/245 (9%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M     + LE+ IGY F ++ LL +A  H S S      Y+RLEFLGD +L  +I++ L+
Sbjct: 1128 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 1187

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110
            + +   K G+++   +  V  ++ +  A E  +   +   S+      S           
Sbjct: 1188 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 1247

Query: 111  ---------MTSIQADVVESLIAALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTE 160
                           D+VES I A+ LD G        V     +  L       +   E
Sbjct: 1248 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 1307

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219
            L+E            K     G  H     V V I          + + +AA + AA E 
Sbjct: 1308 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 1364

Query: 220  LKREG 224
            L +  
Sbjct: 1365 LSKLK 1369



 Score = 41.1 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 148  LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPA 201
                   + A++ L E   A +   PE+K+    GP H  +FT  VVVEI G    L   
Sbjct: 1480 YHGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLEC 1539

Query: 202  QGMDC-SKRAAEQVAAAEV---LKREG 224
                   K+AA++ AA      LK+ G
Sbjct: 1540 HSDGKLQKKAAQEHAAQGALWCLKQLG 1566



 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 3/130 (2%)

Query: 23   LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
            + +ALT          S ER E LGD  L  ++    F  ++   EG+L+ R + +V+  
Sbjct: 946  ILEALTTEKCLERI--SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNS 1003

Query: 83   TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
               +++    L  +IR                   V  + +        I          
Sbjct: 1004 HLYELSIRKKLQVYIRDQQ-FEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNL 1062

Query: 143  WKQRALKSGK 152
               R+     
Sbjct: 1063 RCTRSHHWLH 1072


>gi|117620609|ref|YP_855343.1| ribonuclease III [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117562016|gb|ABK38964.1| ribonuclease III [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 223

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 74/212 (34%), Positives = 110/212 (51%), Gaps = 6/212 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             ++ + L+ R+G+ F ++ LL +ALTH S    +    ERLEFLGD IL L+I+  LF+
Sbjct: 1   MNIKMNRLQSRLGHVFQDQELLTRALTHRSAGSRH---NERLEFLGDSILSLVIADDLFH 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A EG+LS    +LV  +T +++ RE DL   + +     K       SI AD VE+
Sbjct: 58  RFPQAAEGDLSRMRATLVREKTLAELGREFDLGDHLILGPGELKSGGFRRESILADTVEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A+YLD  +E   T +  ++  R  +      ++D KT LQE         P Y VT 
Sbjct: 118 VIGAVYLDTNLETVRTLLLGWYASRLDEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVTN 177

Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
             G  H+  FTV  ++ GL  P  G+  S+R 
Sbjct: 178 VKGEAHNQEFTVQCDVEGLDGPLVGVGTSRRK 209


>gi|312140459|ref|YP_004007795.1| ribonuclease iii [Rhodococcus equi 103S]
 gi|325675924|ref|ZP_08155607.1| ribonuclease III [Rhodococcus equi ATCC 33707]
 gi|311889798|emb|CBH49115.1| ribonuclease III [Rhodococcus equi 103S]
 gi|325553162|gb|EGD22841.1| ribonuclease III [Rhodococcus equi ATCC 33707]
          Length = 256

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 93/209 (44%), Gaps = 6/209 (2%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL  ALTH S ++ +    + ERLEFLGD +LGL I+  L+       EGEL+    S+
Sbjct: 31  DLLTLALTHRSYAYEHGGLPTNERLEFLGDSVLGLTITERLYTAHPEKSEGELAKIRASI 90

Query: 79  VSAETCSQVARELDLASFIRVSSDL---RKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           V+    ++VAR L                        SI AD +ESL+ A++L+ GI+ A
Sbjct: 91  VNMHALAEVARGLGPGGLGAHLLLGKGEEMTGGRDKPSILADGMESLLGAIHLEHGIDTA 150

Query: 136 GTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
              V   +     ++ K           +   A+ G+         +GPDHD  FT  V 
Sbjct: 151 RRVVLDLFADLLSRAPKLGAGLDWKTSLQELTAERGIGVPSYEITATGPDHDKEFTATVV 210

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           + G A   G+  SK+ AEQ AA+      
Sbjct: 211 VGGDAFGVGVGRSKKEAEQKAASTAWSAL 239


>gi|314954310|gb|EFS98716.1| ribonuclease III [Propionibacterium acnes HL027PA1]
          Length = 265

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 38  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  Q+AR+L +   I++     +      TSI AD  E+L+
Sbjct: 97  PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++    
Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVGF- 215

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253


>gi|320108696|ref|YP_004184286.1| ribonuclease III [Terriglobus saanensis SP1PR4]
 gi|319927217|gb|ADV84292.1| ribonuclease III [Terriglobus saanensis SP1PR4]
          Length = 252

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 107/243 (44%), Gaps = 24/243 (9%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57
           M+    + L +R+GY F +  LL+ ALTHSS++       ES ER+EF+GD ++GL+++ 
Sbjct: 1   MAKAAKTGLAERLGYKFRDAKLLDLALTHSSLAFEAGTASESNERMEFVGDAVVGLIVAE 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  F S  EGEL+     LVS +   +V   L L  ++++     +       ++ A+
Sbjct: 61  SLFQRFPSLGEGELTRMRALLVSRKHLGEVGARLGLGEYLQLGRGEEQSGGRKKPALMAN 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP---- 173
            +E+++AA+YLDGG+      V++      +   +     +T                  
Sbjct: 121 AMEAVLAAVYLDGGLSAVQEIVEREVVLPKMPELERAAGEQTHFGGVVGDYKSALQELLQ 180

Query: 174 ---------EYKVTFRSGPDHDPRFTVVVEI--------SGLAPAQGMDCSKRAAEQVAA 216
                     Y     SGPDH   F V + +             A G   +K+AA+Q AA
Sbjct: 181 ARGVGSAVARYVTAEESGPDHRKHFRVELMLVEGDAASKKETLLAVGEGPTKKAAQQKAA 240

Query: 217 AEV 219
              
Sbjct: 241 EIA 243


>gi|251764670|sp|A7LFZ6|DCL4_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 4; AltName:
            Full=Dicer-like protein 4; Short=OsDCL4; AltName:
            Full=Protein SHOOT ORGANIZATION 1
 gi|152926631|gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group]
          Length = 1657

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 90/245 (36%), Gaps = 24/245 (9%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M     + LE+ IGY F ++ LL +A  H S S      Y+RLEFLGD +L  +I++ L+
Sbjct: 1209 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 1268

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110
            + +   K G+++   +  V  ++ +  A E  +   +   S+      S           
Sbjct: 1269 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 1328

Query: 111  ---------MTSIQADVVESLIAALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTE 160
                           D+VES I A+ LD G        V     +  L       +   E
Sbjct: 1329 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 1388

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219
            L+E            K     G  H     V V I          + + +AA + AA E 
Sbjct: 1389 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 1445

Query: 220  LKREG 224
            L +  
Sbjct: 1446 LSKLK 1450



 Score = 41.1 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 148  LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPA 201
                   + A++ L E   A +   PE+K+    GP H  +FT  VVVEI G    L   
Sbjct: 1561 YHGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLEC 1620

Query: 202  QGMDC-SKRAAEQVAAAEV---LKREG 224
                   K+AA++ AA      LK+ G
Sbjct: 1621 HSDGKLQKKAAQEHAAQGALWCLKQLG 1647



 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 3/130 (2%)

Query: 23   LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
            + +ALT          S ER E LGD  L  ++    F  ++   EG+L+ R + +V+  
Sbjct: 1027 ILEALTTEKCLERI--SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNS 1084

Query: 83   TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
               +++    L  +IR                   V  + +        I          
Sbjct: 1085 HLYELSIRKKLQVYIRDQQ-FEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNL 1143

Query: 143  WKQRALKSGK 152
               R+     
Sbjct: 1144 RCTRSHHWLH 1153


>gi|146298900|ref|YP_001193491.1| ribonuclease III [Flavobacterium johnsoniae UW101]
 gi|146153318|gb|ABQ04172.1| Ribonuclease III [Flavobacterium johnsoniae UW101]
          Length = 246

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIST 57
             + + T++K +G+   N    +KA TH S +      +  +YERLEFLGD +L  +I+ 
Sbjct: 16  DGIFFDTIQKILGFQPINIEFYKKAFTHRSSNKLDEAGHPINYERLEFLGDAMLSAVIAA 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LFN   +  EG L+   + +VS E  +++ ++L+L  F+     ++    +   +I   
Sbjct: 76  HLFNKAPNGDEGYLTKMRSKIVSREHLNELGKDLNLVRFVESKVPVQHFGENIHGNIFES 135

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ++ ++                V   +   A   GK        ++     K      Y +
Sbjct: 136 LIGAIYLDKGYSYCERFIQKRVITPYVDIARLEGKVISYKSLVIEWCQKEKR--IFHYDI 193

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
              +G D    F V + I     A+    SK+ AE+ A+   
Sbjct: 194 FEDNGIDGQRLFGVKLSIDDKVVARARATSKKKAEEKASQRA 235


>gi|32488296|emb|CAE03362.1| OSJNBb0065L13.5 [Oryza sativa Japonica Group]
 gi|116311061|emb|CAH67991.1| OSIGBa0157K09-H0214G12.2 [Oryza sativa Indica Group]
          Length = 1604

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 90/245 (36%), Gaps = 24/245 (9%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M     + LE+ IGY F ++ LL +A  H S S      Y+RLEFLGD +L  +I++ L+
Sbjct: 1156 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 1215

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110
            + +   K G+++   +  V  ++ +  A E  +   +   S+      S           
Sbjct: 1216 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 1275

Query: 111  ---------MTSIQADVVESLIAALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTE 160
                           D+VES I A+ LD G        V     +  L       +   E
Sbjct: 1276 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 1335

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219
            L+E            K     G  H     V V I          + + +AA + AA E 
Sbjct: 1336 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 1392

Query: 220  LKREG 224
            L +  
Sbjct: 1393 LSKLK 1397



 Score = 41.1 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 148  LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPA 201
                   + A++ L E   A +   PE+K+    GP H  +FT  VVVEI G    L   
Sbjct: 1508 YHGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLEC 1567

Query: 202  QGMDC-SKRAAEQVAAAEV---LKREG 224
                   K+AA++ AA      LK+ G
Sbjct: 1568 HSDGKLQKKAAQEHAAQGALWCLKQLG 1594



 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 3/130 (2%)

Query: 23   LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
            + +ALT          S ER E LGD  L  ++    F  ++   EG+L+ R + +V+  
Sbjct: 974  ILEALTTEKCLERI--SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNS 1031

Query: 83   TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
               +++    L  +IR                   V  + +        I          
Sbjct: 1032 HLYELSIRKKLQVYIRDQQ-FEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNL 1090

Query: 143  WKQRALKSGK 152
               R+     
Sbjct: 1091 RCTRSHHWLH 1100


>gi|115459356|ref|NP_001053278.1| Os04g0509300 [Oryza sativa Japonica Group]
 gi|113564849|dbj|BAF15192.1| Os04g0509300 [Oryza sativa Japonica Group]
          Length = 1090

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 90/245 (36%), Gaps = 24/245 (9%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M     + LE+ IGY F ++ LL +A  H S S      Y+RLEFLGD +L  +I++ L+
Sbjct: 642 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 701

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110
           + +   K G+++   +  V  ++ +  A E  +   +   S+      S           
Sbjct: 702 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 761

Query: 111 ---------MTSIQADVVESLIAALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTE 160
                          D+VES I A+ LD G        V     +  L       +   E
Sbjct: 762 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 821

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219
           L+E            K     G  H     V V I          + + +AA + AA E 
Sbjct: 822 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 878

Query: 220 LKREG 224
           L +  
Sbjct: 879 LSKLK 883



 Score = 41.1 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 148  LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPA 201
                   + A++ L E   A +   PE+K+    GP H  +FT  VVVEI G    L   
Sbjct: 994  YHGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLEC 1053

Query: 202  QGMDC-SKRAAEQVAAAEV---LKREG 224
                   K+AA++ AA      LK+ G
Sbjct: 1054 HSDGKLQKKAAQEHAAQGALWCLKQLG 1080



 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 3/130 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           + +ALT          S ER E LGD  L  ++    F  ++   EG+L+ R + +V+  
Sbjct: 460 ILEALTTEKCLERI--SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNS 517

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              +++    L  +IR                   V  + +        I          
Sbjct: 518 HLYELSIRKKLQVYIRDQQ-FEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNL 576

Query: 143 WKQRALKSGK 152
              R+     
Sbjct: 577 RCTRSHHWLH 586


>gi|294626963|ref|ZP_06705554.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294664535|ref|ZP_06729880.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292598823|gb|EFF42969.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292605697|gb|EFF49003.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 226

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 77/214 (35%), Positives = 106/214 (49%), Gaps = 6/214 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+ +LL +AL H S         ERLEFLGD I+ LLI+  L+  +  A EG L+
Sbjct: 12  IGHAFADPALLAQALRHRSAG---TPHNERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E               AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYVLISESGDEHAKQFH 188

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   +   +A A+G   S+R AEQ AA  V+ + 
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222


>gi|215694849|dbj|BAG90040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1058

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 90/245 (36%), Gaps = 24/245 (9%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M     + LE+ IGY F ++ LL +A  H S S      Y+RLEFLGD +L  +I++ L+
Sbjct: 610 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 669

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110
           + +   K G+++   +  V  ++ +  A E  +   +   S+      S           
Sbjct: 670 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 729

Query: 111 ---------MTSIQADVVESLIAALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTE 160
                          D+VES I A+ LD G        V     +  L       +   E
Sbjct: 730 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 789

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219
           L+E            K     G  H     V V I          + + +AA + AA E 
Sbjct: 790 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 846

Query: 220 LKREG 224
           L +  
Sbjct: 847 LSKLK 851



 Score = 41.1 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 148  LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPA 201
                   + A++ L E   A +   PE+K+    GP H  +FT  VVVEI G    L   
Sbjct: 962  YHGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLEC 1021

Query: 202  QGMDC-SKRAAEQVAAAEV---LKREG 224
                   K+AA++ AA      LK+ G
Sbjct: 1022 HSDGKLQKKAAQEHAAQGALWCLKQLG 1048



 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 3/130 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           + +ALT          S ER E LGD  L  ++    F  ++   EG+L+ R + +V+  
Sbjct: 428 ILEALTTEKCLERI--SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNS 485

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              +++    L  +IR                   V  + +        I          
Sbjct: 486 HLYELSIRKKLQVYIRDQQ-FEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNL 544

Query: 143 WKQRALKSGK 152
              R+     
Sbjct: 545 RCTRSHHWLH 554


>gi|157279689|dbj|BAF80150.1| SHOOT ORGANIZATION1 [Oryza sativa Japonica Group]
          Length = 1631

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 90/245 (36%), Gaps = 24/245 (9%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M     + LE+ IGY F ++ LL +A  H S S      Y+RLEFLGD +L  +I++ L+
Sbjct: 1183 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 1242

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110
            + +   K G+++   +  V  ++ +  A E  +   +   S+      S           
Sbjct: 1243 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 1302

Query: 111  ---------MTSIQADVVESLIAALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTE 160
                           D+VES I A+ LD G        V     +  L       +   E
Sbjct: 1303 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 1362

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219
            L+E            K     G  H     V V I          + + +AA + AA E 
Sbjct: 1363 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 1419

Query: 220  LKREG 224
            L +  
Sbjct: 1420 LSKLK 1424



 Score = 41.1 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 148  LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPA 201
                   + A++ L E   A +   PE+K+    GP H  +FT  VVVEI G    L   
Sbjct: 1535 YHGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLEC 1594

Query: 202  QGMDC-SKRAAEQVAAAEV---LKREG 224
                   K+AA++ AA      LK+ G
Sbjct: 1595 HSDGKLQKKAAQEHAAQGALWCLKQLG 1621



 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 3/130 (2%)

Query: 23   LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
            + +ALT          S ER E LGD  L  ++    F  ++   EG+L+ R + +V+  
Sbjct: 1001 ILEALTTEKCLERI--SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNS 1058

Query: 83   TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
               +++    L  +IR                   V  + +        I          
Sbjct: 1059 HLYELSIRKKLQVYIRDQQ-FEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNL 1117

Query: 143  WKQRALKSGK 152
               R+     
Sbjct: 1118 RCTRSHHWLH 1127


>gi|154247804|ref|YP_001418762.1| ribonuclease III [Xanthobacter autotrophicus Py2]
 gi|154161889|gb|ABS69105.1| Ribonuclease III [Xanthobacter autotrophicus Py2]
          Length = 236

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 92/212 (43%), Positives = 130/212 (61%), Gaps = 5/212 (2%)

Query: 1   MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLI 55
           M+A+    +++E+RIGY F +RS+LE AL+H S          SY+R+EFLGD +LG ++
Sbjct: 1   MNAVGSDLASVEERIGYRFRDRSILELALSHISAVKGEAPRLRSYQRMEFLGDHVLGSVV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S +L+  F   +EGELS R   LV  E C++VA+++DL  FIR+     +       +I 
Sbjct: 61  SHMLYLAFPEGEEGELSRRLAELVREEACAEVAQDMDLGPFIRLGPGESQSGAHKRRAIL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           ADV E ++AA++LDGG E A   V+++W+ R     +  RDAKT LQEWA A+    P Y
Sbjct: 121 ADVAEGVVAAVFLDGGYEAAHQVVERFWRPRLETPRRPLRDAKTVLQEWAQARGLPPPSY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +   RSGPDH PRFTV V++ GLA  Q    S
Sbjct: 181 REVTRSGPDHAPRFTVAVDLPGLASEQADGAS 212


>gi|325926994|ref|ZP_08188269.1| RNAse III [Xanthomonas perforans 91-118]
 gi|325928522|ref|ZP_08189710.1| RNAse III [Xanthomonas perforans 91-118]
 gi|325541061|gb|EGD12615.1| RNAse III [Xanthomonas perforans 91-118]
 gi|325542653|gb|EGD14120.1| RNAse III [Xanthomonas perforans 91-118]
          Length = 226

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 77/214 (35%), Positives = 106/214 (49%), Gaps = 6/214 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+ +LL +AL H S         ERLEFLGD I+ LLI+  L+  +  A EG L+
Sbjct: 12  IGHAFADPALLAQALRHRSAG---TPHNERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E               AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFH 188

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   +   +A A+G   S+R AEQ AA  V+ + 
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222


>gi|289711908|gb|ACC62400.2| ribonuclease III [Penaeus monodon]
          Length = 2473

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 84/247 (34%), Gaps = 28/247 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E++IGY F +RS L +A TH+S   +     Y+RLEFLGD +L  LI+  L+    
Sbjct: 2217 YQVFEEKIGYTFRDRSYLLQAFTHASYYKNRLTGCYQRLEFLGDAVLDYLITRHLYEDKR 2276

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A + D   + R  S     V      +Q +    +  
Sbjct: 2277 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINE 2336

Query: 125  ALYLDGGIEVAGTFVDKYWK------------------------QRALKSGKFRRDAKTE 160
              Y     E       +  K                             +   R   +  
Sbjct: 2337 EYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCREIEQFS 2396

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDH---DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
                      +      T + G      D +  V VEI G     G+  + R A+  AA 
Sbjct: 2397 GVVPKSPIRELLEMEPETAKFGKPERLVDGKVRVSVEIFGKGSFSGVGRNYRIAKSTAAK 2456

Query: 218  EVLKREG 224
              L+   
Sbjct: 2457 RALRHLK 2463



 Score = 41.8 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 2/98 (2%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              + +   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +    EG+
Sbjct: 1953 DLLNHPGPSPSVILQALTMSNANDGV--NLERLETIGDSFLKYAITTFLYCTYPQRHEGK 2010

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
            LS   +  VS     ++ +   L   +  +     D  
Sbjct: 2011 LSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNW 2048


>gi|300361933|ref|ZP_07058110.1| ribonuclease III [Lactobacillus gasseri JV-V03]
 gi|300354552|gb|EFJ70423.1| ribonuclease III [Lactobacillus gasseri JV-V03]
          Length = 226

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 4/212 (1%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57
           M ++ +   L+++ G  F N +LLE A THSS ++ +  ++ YE+LEFLGD +L L +S 
Sbjct: 1   MVSVAFKNNLKEKYGIKFNNENLLEDAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+ HF    EGEL+   +++V  E  S+ A E    + I +     K       ++  D
Sbjct: 61  YLYRHFPRLNEGELTRMRSNIVRTEGFSEFAIECGFPAEINLGKGEEKAGARKRKTLLED 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           V E+   AL+LD G+     F+         +             +      G       
Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQ 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                    P F V + ++    ++G   +K+
Sbjct: 181 VIAEDES-KPYFKVQLLVNDKKISEGQGRNKK 211


>gi|95930677|ref|ZP_01313411.1| Ribonuclease III [Desulfuromonas acetoxidans DSM 684]
 gi|95133329|gb|EAT14994.1| Ribonuclease III [Desulfuromonas acetoxidans DSM 684]
          Length = 244

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 106/207 (51%), Gaps = 5/207 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFN 61
            S  E+R+GY F +R  L+ AL H S ++          ER EFLGD +L L+++  LF 
Sbjct: 13  LSQFEERLGYRFTDRHYLQTALIHKSYANEQLRDPAACNERQEFLGDAVLDLVMADYLFC 72

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EGELS   + LVSA   ++VAR L+L   +++    R+       ++ AD +E+
Sbjct: 73  TYPQLPEGELSRIRSELVSARALAKVARRLNLGPCLKLGRGERRSGGQDKDNLLADALEA 132

Query: 122 LIAALYLDGGIEVAGTFV-DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +  A++LD G +VA   +   +       + +   D KT  QE A A+FG  PEY++   
Sbjct: 133 VFGAVFLDAGWDVARDVLGRMFEGTAVQAARRKSLDYKTRFQELAQARFGAAPEYELVAT 192

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207
            GPDH   +TV+V   G    QG   S
Sbjct: 193 EGPDHQREYTVIVSCEGRHLGQGSGGS 219


>gi|225351172|ref|ZP_03742195.1| hypothetical protein BIFPSEUDO_02762 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158628|gb|EEG71870.1| hypothetical protein BIFPSEUDO_02762 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 275

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 7/227 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLF 60
            +  + L + +G       LL +ALTH S SH     ++YERLEFLGD +L L+ +  L+
Sbjct: 15  EMTANALLEALGTTLE-PDLLVEALTHRSFSHENPGAKNYERLEFLGDAVLELVSTETLY 73

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                  EG+L+      VS E+ S++AR +L+   +I +         +  +SI  D+V
Sbjct: 74  KAHPDMNEGQLAKMRAKAVSEESLSKIAREKLNAGPYILLGHGESDQGGADKSSILCDIV 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ESLI A ++  GI+ A   V     +  A  + +                 G        
Sbjct: 134 ESLIGATFIQHGIDEARRVVHHLVDETLAEVATEGPALDWKTSLTVKAHGMGFGEPRYQM 193

Query: 179 FRSGPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             SGP++   FT  V +       + G   SKR A+  AA E  K  
Sbjct: 194 SVSGPEYAQVFTANVMLGESDEIISTGTGTSKRKAQLAAAEEGWKAL 240


>gi|212716732|ref|ZP_03324860.1| hypothetical protein BIFCAT_01669 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660436|gb|EEB21011.1| hypothetical protein BIFCAT_01669 [Bifidobacterium catenulatum DSM
           16992]
          Length = 278

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 7/227 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLF 60
            +  + L + +G       LL +ALTH S SH     ++YERLEFLGD +L L+ +  L+
Sbjct: 15  EMTANALLEALGTTLE-PDLLVEALTHRSFSHENPGAKNYERLEFLGDAVLELVSTETLY 73

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                  EG+L+      VS E+ S++AR +L+   +I +         +  +SI  D+V
Sbjct: 74  KAHPDMNEGQLAKMRAKAVSEESLSKIAREKLNAGPYILLGHGESDQGGADKSSILCDIV 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ESLI A ++  GI+ A   V     +  A  + +                 G        
Sbjct: 134 ESLIGATFIQHGIDEARRVVHHLVDETLAEVATEGPALDWKTSLTVKAHGMGFGEPRYQM 193

Query: 179 FRSGPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             SGP++   FT  V +       + G   SKR A+  AA E  K  
Sbjct: 194 SVSGPEYAQVFTANVMLGESDEIISTGTGTSKRKAQLAAAEEGWKAL 240


>gi|21230730|ref|NP_636647.1| ribonuclease III [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66769274|ref|YP_244036.1| ribonuclease III [Xanthomonas campestris pv. campestris str. 8004]
 gi|188992425|ref|YP_001904435.1| ribonuclease III [Xanthomonas campestris pv. campestris str. B100]
 gi|24212269|sp|Q8PB52|RNC_XANCP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81304767|sp|Q4USF7|RNC_XANC8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|21112323|gb|AAM40571.1| ribonuclease III [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574606|gb|AAY50016.1| ribonuclease III [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734185|emb|CAP52393.1| Ribonuclease III [Xanthomonas campestris pv. campestris]
          Length = 226

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 79/214 (36%), Positives = 110/214 (51%), Gaps = 6/214 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+  LL +AL H S         ERLEFLGD I+ LLI+  L+  +  A EG L+
Sbjct: 12  IGHAFADPGLLAQALRHRSAG---TPHNERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P+Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEPSLAALPVGKAEKDPKTRLQEWLQARQLPLPQYALISESGDEHAKQFH 188

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   +    A A+G   S+R AEQ AAA V+ + 
Sbjct: 189 VACILEQPAARAEGQGTSRRLAEQQAAATVIAQL 222


>gi|126726095|ref|ZP_01741937.1| ribonuclease III [Rhodobacterales bacterium HTCC2150]
 gi|126705299|gb|EBA04390.1| ribonuclease III [Rhodobacterales bacterium HTCC2150]
          Length = 228

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 83/209 (39%), Positives = 118/209 (56%), Gaps = 1/209 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  A        RIG+ F+   LL +A+TH+SIS + +   +RLEFLGDRILGL+++  L
Sbjct: 1   MKVAADLVAFSARIGHEFSKPELLVEAVTHASISSANRSDNQRLEFLGDRILGLVMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
            N   SA EG L+ RFN+LV  ETC+ VARE+DL + +++             ++  D +
Sbjct: 61  LNADTSANEGTLAPRFNALVRKETCADVAREIDLGAVLKLGRSEMISGGRRKLALLGDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+YLD G E A  F+ + W +R     +  RD K+ LQEWA A+    P YK+  
Sbjct: 121 EAVIAAVYLDAGFEAARDFILRSWGERINAVDEDARDPKSSLQEWAQARKMPPPVYKLLR 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           R G DH P FT+   +     A+    SK
Sbjct: 181 REGADHAPMFTIAAILDSGQQAEAKAPSK 209


>gi|269957060|ref|YP_003326849.1| ribonuclease III [Xylanimonas cellulosilytica DSM 15894]
 gi|269305741|gb|ACZ31291.1| ribonuclease III [Xylanimonas cellulosilytica DSM 15894]
          Length = 239

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + L +++G    +  LL  ALTH S +H        ERLEFLGD +LG++++  LF    
Sbjct: 13  TALLEKLGV-PLDPELLVLALTHRSFAHEAGGIPHNERLEFLGDSVLGVVVTEALFRRHP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    + VS  + + VAR L+L S++ +    R+       SI +D VE+LI 
Sbjct: 72  DVSEGELAKMRAATVSQRSLAAVARRLELGSYVLLGKGERRTRGFDKDSILSDTVEALIG 131

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A Y+  G+E A   V +        +       D KT LQE    +    P        G
Sbjct: 132 ATYISHGLEAARELVHRLVDDTLDAAADLGAGLDWKTSLQEACAERGYPAP-TYEVDAEG 190

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P+H   F   V  +G     G   +K+ AEQ AA +  +  
Sbjct: 191 PEHARAFHAQVT-AGPVLGLGHGTAKKHAEQEAAEQAYRAL 230


>gi|308494532|ref|XP_003109455.1| CRE-DRSH-1 protein [Caenorhabditis remanei]
 gi|308246868|gb|EFO90820.1| CRE-DRSH-1 protein [Caenorhabditis remanei]
          Length = 1073

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 13/228 (5%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63
            +  LE  +   F N  LL KA T  ++ H+   +   +RLE+LGD +L L++S  LF  +
Sbjct: 821  FHKLENILNIKFNNIRLLAKAFTRRNVPHNDLTKGHNQRLEWLGDSVLQLVVSDYLFRRY 880

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG +S+   SLVS +T S V  +L    F+        +        +AD+VE+ I
Sbjct: 881  PLHHEGHMSLLRTSLVSNQTQSVVCDDLGFLEFVVKPPHKTPE---LKMKDKADLVEAFI 937

Query: 124  AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA------HAKFGVTPEY 175
             ALY+D GIE   +F+   +  R     + +   DAK+ LQ+W              P+Y
Sbjct: 938  GALYVDRGIEHCRSFIRIVFCPRLKHFINSEQWNDAKSHLQQWCLAIRDAQNPNPAMPDY 997

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            ++    GP ++  F V V   G   A   + +   AE  AA   L   
Sbjct: 998  RILSIEGPTNNRIFKVGVYFRGKRLASAAESNVHKAELKAAEIALASL 1045



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 48/206 (23%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------------------------ 38
               S  E+ I Y F +R ++E AL HSS    Y                          
Sbjct: 593 NFSLSVFEEIIEYQFNDRKVIELALIHSSFRSHYGTPPDHIKNIISNCGYRRKYGSEEKR 652

Query: 39  ------------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
                                     ERLE+LGD ++ L++S  L+       EG L+  
Sbjct: 653 EKKKGIVSLFNIMGGETEGGEPILHNERLEYLGDAVVELIVSHHLYFMLPHHFEGGLATY 712

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             +LV     + +A+   +   ++ +        +      A+  E+++AA+YLDGG+  
Sbjct: 713 RTALVQNRNLADLAKNCRIDEMLQYAHGADLINEAEWKHALANAFEAVVAAVYLDGGLGA 772

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTE 160
                 K     A    K        
Sbjct: 773 CDRLFSKAMYGSAPNLKKVWDHINEH 798


>gi|284799722|ref|ZP_05984688.2| ribonuclease III [Neisseria subflava NJ9703]
 gi|284797336|gb|EFC52683.1| ribonuclease III [Neisseria subflava NJ9703]
          Length = 296

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 65/217 (29%), Positives = 110/217 (50%), Gaps = 6/217 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            ++KR+GY F N  LL++ALTH S      +  ER EF+GD IL   ++ +LF+ F    
Sbjct: 13  AIQKRLGYEFRNMELLQQALTHRSY---NAKHNERFEFVGDSILNYSVARMLFDAFPKLS 69

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EGELS    +LV+    +++A E+++   + + +   K       SI AD +E++ AA+ 
Sbjct: 70  EGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAVS 129

Query: 128 LDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
            D     A   V   + +R  ++     ++D+KT LQE   A+    P+Y++  ++    
Sbjct: 130 FDADFSAAEKVVRHLFAERVKRADLNIGKKDSKTALQEALQARRFALPKYRIEEQAEQTA 189

Query: 186 DPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
           D  F +  ++  L         S++ AEQ AA E L+
Sbjct: 190 DAMFVISCDLGELGFICNARGSSRKVAEQKAACEALE 226


>gi|84515163|ref|ZP_01002526.1| ribonuclease III [Loktanella vestfoldensis SKA53]
 gi|84511322|gb|EAQ07776.1| ribonuclease III [Loktanella vestfoldensis SKA53]
          Length = 226

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 83/210 (39%), Positives = 120/210 (57%), Gaps = 1/210 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +   ++  +R+GY+F    LL +++THSS+   +++  +RLEFLGDR+LGL+++  L
Sbjct: 1   MKLSADLASFSQRLGYSFVRPDLLVRSVTHSSMVSIHRDDNQRLEFLGDRVLGLVMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                SA EG L+ R+N+LV  ETC+ VARE+DL + I++     K       ++ AD +
Sbjct: 61  LKADPSAPEGLLAPRYNALVRRETCADVAREVDLGAVIKLGRSEMKSGGRRKEALLADAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+Y DGG + A   V   W  R        RDAKT LQEWA A+    P Y  T 
Sbjct: 121 EAVIAAIYQDGGFDAARKVVLHLWGARITNVADDARDAKTALQEWAQARGEAPPSYTETA 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           R+GPDH P FT+ V +           SKR
Sbjct: 181 RTGPDHQPAFTIAVTLESGQTETATAGSKR 210


>gi|296453545|ref|YP_003660688.1| ribonuclease III [Bifidobacterium longum subsp. longum JDM301]
 gi|296182976|gb|ADG99857.1| Ribonuclease III [Bifidobacterium longum subsp. longum JDM301]
          Length = 242

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + L + +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF    
Sbjct: 13  NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS +  S +A+ +L +  +I +     +   +   SI  D+VESLI
Sbjct: 72  DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGETEQGGAEKNSILCDIVESLI 131

Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A +L+ GI+ A   + +      A  + +                 G          SG
Sbjct: 132 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKDEPVYHMEVSG 191

Query: 183 PDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P++   FT  V +  +G     G   SKR A+  AA    K  
Sbjct: 192 PEYAQIFTARVSLGENGDIIGIGKGSSKRKAQLAAAEAGWKSL 234


>gi|119717505|ref|YP_924470.1| ribonuclease III [Nocardioides sp. JS614]
 gi|119538166|gb|ABL82783.1| RNAse III [Nocardioides sp. JS614]
          Length = 276

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 3/208 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
            Y+ L   +G    +  LLE+ALTH S ++      + ERLEFLGD +LG++++  L+  
Sbjct: 34  NYAELRAALGDPTLDPELLERALTHRSFAYENGGLPTNERLEFLGDSVLGVVVTETLYLK 93

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                EG L+    ++V+A   ++V R + +   +++             SI +D VE++
Sbjct: 94  HPDLSEGRLAKLRAAVVNARALAEVGRRIGVGEHVKLGRGEESTGGRHKASILSDTVEAV 153

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRS 181
           I A++L GG   +   V + +      +             +   A+ G+     V    
Sbjct: 154 IGAVHLSGGFTTSAVVVHRLFDPLIEAASALGAGLDWKTSLQELSAEHGLGVPEYVIEDD 213

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           GPDH   FT  V +       G+  SK+
Sbjct: 214 GPDHMKTFTAQVRVGEGLYGNGVGRSKK 241


>gi|155371010|ref|YP_001426544.1| hypothetical protein ATCV1_Z063L [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124330|gb|ABT16197.1| hypothetical protein ATCV1_Z063L [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 268

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 88/221 (39%), Gaps = 5/221 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             +E  IG    + +L   A    S +      E++ERLEFLGD +LG LI+  L++ F 
Sbjct: 45  EEIEGLIGMPVCDFNLYVTAF---SYNPLEENGETFERLEFLGDSVLGFLIARYLYDVFP 101

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+      VS +  S++A +L L  FI +S                D  E+LI 
Sbjct: 102 GKNEGVLTRLRVKFVSGKLLSKLAHQLGLHEFIIMSQKGLYRCWHTNPKTLEDAFEALIG 161

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLD GI  A  F+     +              +          +     VT      
Sbjct: 162 AIYLDLGINAARQFLMSVLTKHVNIYELMIDANHKDRLVKHCRVLNLAKPTFVTTFERGG 221

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            +  F V   I  +   +G   +++ AEQ AA   L R GI
Sbjct: 222 TNSMFVVEARIDNVPHGEGTGTTRKDAEQAAARTALLRLGI 262


>gi|308271416|emb|CBX28024.1| Ribonuclease 3 [uncultured Desulfobacterium sp.]
          Length = 220

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 7/205 (3%)

Query: 21  SLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           + L ++L HSS  +   +      ERLEFLGD +L L I  ++ N F    EG+LS   +
Sbjct: 2   NFLVESLRHSSFVNEQSDTQIRDNERLEFLGDAVLNLAIGHIIINRFPELDEGDLSRVRS 61

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +LV+    ++VAR LDL S+I++             SI A+  E+++AA+YLDGG + A 
Sbjct: 62  NLVNELQVAEVARSLDLGSYIQLGKGEFLTNGRNKNSILANTFEAVVAAIYLDGGYDNAF 121

Query: 137 TFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             ++K +      SGK     D K+++QE       + P Y V   SGPDHD  F V + 
Sbjct: 122 RIIEKIYLPILKLSGKSAAAYDFKSKVQELVQTGQEIKPAYNVVEESGPDHDKIFKVELT 181

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEV 219
           I+ L    G   SK+ AEQ AA++ 
Sbjct: 182 INDLQ-TVGYGKSKKLAEQDAASKA 205


>gi|239622484|ref|ZP_04665515.1| ribonuclease III [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239514481|gb|EEQ54348.1| ribonuclease III [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 272

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + L + +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF    
Sbjct: 43  NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 101

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS +  S +A+ +L +  +I +     +   +   SI  D+VESLI
Sbjct: 102 DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 161

Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A +L+ GI+ A   + +      A  + +                 G          SG
Sbjct: 162 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHMEVSG 221

Query: 183 PDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P++   FT  V +  +G     G   SKR A+  AA    K  
Sbjct: 222 PEYAQIFTARVSLGENGDIIGIGKGSSKRKAQLAAAEAGWKSL 264


>gi|23464896|ref|NP_695499.1| ribonuclease III [Bifidobacterium longum NCC2705]
 gi|23325487|gb|AAN24135.1| ribonuclease III [Bifidobacterium longum NCC2705]
          Length = 277

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + L + +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF    
Sbjct: 48  NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 106

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS +  S +A+ +L +  +I +     +   +   SI  D+VESLI
Sbjct: 107 DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 166

Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A +L+ GI+ A   + +      A  + +                 G          SG
Sbjct: 167 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHMEVSG 226

Query: 183 PDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P++   FT  V +  +G     G   SKR A+  AA    K  
Sbjct: 227 PEYAQIFTARVSLGENGDIIGIGKGSSKRKAQLAAAEAGWKSL 269


>gi|46190765|ref|ZP_00121069.2| COG0571: dsRNA-specific ribonuclease [Bifidobacterium longum
           DJO10A]
 gi|189439904|ref|YP_001954985.1| ribonuclease III [Bifidobacterium longum DJO10A]
 gi|312133320|ref|YP_004000659.1| rnc [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482014|ref|ZP_07941039.1| ribonuclease III [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688500|ref|YP_004208234.1| ribonuclease III [Bifidobacterium longum subsp. infantis 157F]
 gi|322690510|ref|YP_004220080.1| ribonuclease III [Bifidobacterium longum subsp. longum JCM 1217]
 gi|90101613|sp|Q8G7H1|RNC_BIFLO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189428339|gb|ACD98487.1| dsRNA-specific ribonuclease [Bifidobacterium longum DJO10A]
 gi|291517392|emb|CBK71008.1| RNAse III [Bifidobacterium longum subsp. longum F8]
 gi|311772536|gb|ADQ02024.1| Rnc [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916581|gb|EFV37978.1| ribonuclease III [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455366|dbj|BAJ65988.1| ribonuclease III [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320459836|dbj|BAJ70456.1| ribonuclease III [Bifidobacterium longum subsp. infantis 157F]
          Length = 242

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + L + +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF    
Sbjct: 13  NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS +  S +A+ +L +  +I +     +   +   SI  D+VESLI
Sbjct: 72  DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 131

Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A +L+ GI+ A   + +      A  + +                 G          SG
Sbjct: 132 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHMEVSG 191

Query: 183 PDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P++   FT  V +  +G     G   SKR A+  AA    K  
Sbjct: 192 PEYAQIFTARVSLGENGDIIGIGKGSSKRKAQLAAAEAGWKSL 234


>gi|239617283|ref|YP_002940605.1| ribonuclease III [Kosmotoga olearia TBF 19.5.1]
 gi|239506114|gb|ACR79601.1| ribonuclease III [Kosmotoga olearia TBF 19.5.1]
          Length = 249

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 70/213 (32%), Positives = 105/213 (49%), Gaps = 9/213 (4%)

Query: 19  NRSLLEKALTHSSISHS------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           +   + KAL HSS ++         ES ERLEFLGD +L L ++ LL+  +D   EG +S
Sbjct: 20  DTEWIFKALCHSSYANEVVRKGMNVESNERLEFLGDAVLALSLADLLYREYDV-DEGVMS 78

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                + S +  ++VAR +++  ++ +     K       SI AD  E+++ ALYL  G 
Sbjct: 79  KTRAVVASEKVLAEVARNMNIGEYLLLGKGELKTGGRGRDSILADAFEAILGALYLSEGF 138

Query: 133 EVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E+A  FV +       K  + +   D KT LQE      GV PEY      G   +  F 
Sbjct: 139 EIARNFVKEKLGIYIEKALNKELVLDYKTTLQELTQGNLGVRPEYSYIENIGTPQNKLFH 198

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V V ++G A A G   +K+AAEQ AA +  ++ 
Sbjct: 199 VEVRVNGKALAVGYGKTKKAAEQDAARKAYEKL 231


>gi|15838837|ref|NP_299525.1| ribonuclease III [Xylella fastidiosa 9a5c]
 gi|9107400|gb|AAF85045.1|AE004037_6 ribonuclease III [Xylella fastidiosa 9a5c]
          Length = 212

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 74/210 (35%), Positives = 105/210 (50%), Gaps = 6/210 (2%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           F + SLL +AL H S         ERLEFLGD ++ LLI+  LF  +  A EG L+   +
Sbjct: 2   FTDPSLLLQALRHCSAG---TPHNERLEFLGDSVVNLLIAEALFQRWPRADEGALTRARS 58

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            LV   + + +AR + L   + +     K       SI AD VE++IAA+YLD  +    
Sbjct: 59  ELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVEAVIAAIYLDADLATCR 118

Query: 137 TFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
           T V  +++    AL  GK  +D KT LQEW  A+    P Y++ F SG  H   F V   
Sbjct: 119 TVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELIFESGDPHTKHFRVSCT 178

Query: 195 ISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
           +  L    +G   S+R AEQ AA+  + + 
Sbjct: 179 LGELKLRTEGEGSSRRLAEQDAASHAIDQL 208


>gi|16125807|ref|NP_420371.1| ribonuclease III [Caulobacter crescentus CB15]
 gi|221234567|ref|YP_002517003.1| ribonuclease III [Caulobacter crescentus NA1000]
 gi|22654073|sp|Q9A805|RNC_CAUCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807242|sp|B8H627|RNC_CAUCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|13422947|gb|AAK23539.1| ribonuclease III [Caulobacter crescentus CB15]
 gi|220963739|gb|ACL95095.1| ribonuclease III [Caulobacter crescentus NA1000]
          Length = 231

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 124/204 (60%), Gaps = 3/204 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65
            LE+RIG+ F +R LLE+ALTH+S+    ++    E LEF+GDR+LGLL +  L   F  
Sbjct: 10  DLERRIGHRFEDRELLERALTHASVGDGAKKVRDNEVLEFIGDRVLGLLAAEALAQRFPK 69

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           AKEGEL+ R N+LVS ETC++VAR+ +L   +R+S+   K       SI A   E+L+AA
Sbjct: 70  AKEGELAPRLNALVSRETCARVARKAELGPALRLSASSSKIGGRETDSILAGATEALMAA 129

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LY DGG+E A       W     ++G+   RD KT LQEWA  +    P Y+V  R+GPD
Sbjct: 130 LYQDGGLEAARKVFLDLWNDEFDRAGEGRPRDPKTALQEWAQGQGRPLPTYRVLDRTGPD 189

Query: 185 HDPRFTVVVEISGLAPAQGMDCSK 208
           H P FTV V ++G+ PA     S+
Sbjct: 190 HAPVFTVEVSVTGVDPAIAKGKSR 213


>gi|78046932|ref|YP_363107.1| ribonuclease III [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|90101655|sp|Q3BVV6|RNC_XANC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78035362|emb|CAJ23007.1| ribonuclease III [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 226

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 77/214 (35%), Positives = 106/214 (49%), Gaps = 6/214 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+ +LL +AL H S         ERLEFLGD I+ LLI+  L+  +  A EG L+
Sbjct: 12  IGHAFADPALLARALRHRSAG---TPHNERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E               AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFH 188

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   +   +A A+G   S+R AEQ AA  V+ + 
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222


>gi|189234048|ref|XP_968993.2| PREDICTED: Dicer-1 [Tribolium castaneum]
          Length = 1865

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 95/249 (38%), Gaps = 33/249 (13%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E+ IGY F +RS L +ALTH+S S ++  + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1609 YDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTR 1668

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99
                G L+   ++LV+    + +A       + R                          
Sbjct: 1669 MHSPGALTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQEDSGHTLVD 1728

Query: 100  ----SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
                  +  +     +     DV ES+  A++LD G+ +   +   Y   ++       +
Sbjct: 1729 ELYLVVETEEVEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWKVYYNMMKSEIEQFSNK 1788

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
              K+ ++E            K           R  V VE+ G    +G+  + R A+  A
Sbjct: 1789 VPKSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVEVFGKGVFKGIGRNYRIAKCTA 1845

Query: 216  AAEVLKREG 224
            A   LK   
Sbjct: 1846 AKCALKNLK 1854



 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             ++L +ALT S+ +     + ERLE +GD  L   I+  L++ +++  EG+LS   +  V
Sbjct: 1382 PNVLLQALTMSNANDGI--NLERLETIGDSFLKYAITNYLYSKYENVHEGKLSHLRSKQV 1439

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            S     ++ R   L  ++  +     D            +E  + 
Sbjct: 1440 SNLNLYRLGRRKGLGEYMIATKFDPHDNWLPPCFYVPKELEEALI 1484


>gi|270015102|gb|EFA11550.1| dicer-1 [Tribolium castaneum]
          Length = 1835

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 95/249 (38%), Gaps = 33/249 (13%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E+ IGY F +RS L +ALTH+S S ++  + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1579 YDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTR 1638

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99
                G L+   ++LV+    + +A       + R                          
Sbjct: 1639 MHSPGALTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQEDSGHTLVD 1698

Query: 100  ----SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
                  +  +     +     DV ES+  A++LD G+ +   +   Y   ++       +
Sbjct: 1699 ELYLVVETEEVEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWKVYYNMMKSEIEQFSNK 1758

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
              K+ ++E            K           R  V VE+ G    +G+  + R A+  A
Sbjct: 1759 VPKSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVEVFGKGVFKGIGRNYRIAKCTA 1815

Query: 216  AAEVLKREG 224
            A   LK   
Sbjct: 1816 AKCALKNLK 1824



 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             ++L +ALT S+ +     + ERLE +GD  L   I+  L++ +++  EG+LS   +  V
Sbjct: 1352 PNVLLQALTMSNANDGI--NLERLETIGDSFLKYAITNYLYSKYENVHEGKLSHLRSKQV 1409

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            S     ++ R   L  ++  +     D            +E  + 
Sbjct: 1410 SNLNLYRLGRRKGLGEYMIATKFDPHDNWLPPCFYVPKELEEALI 1454


>gi|213691313|ref|YP_002321899.1| Ribonuclease III [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213522774|gb|ACJ51521.1| Ribonuclease III [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320457380|dbj|BAJ68001.1| ribonuclease III [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 242

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + L + +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF    
Sbjct: 13  NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS +  S +A+ +L +  +I +     +   +   SI  D+VESLI
Sbjct: 72  DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 131

Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A +L+ GI+ A   + +      A  + +                 G          SG
Sbjct: 132 GATFLEHGIDEARKVLHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHMEVSG 191

Query: 183 PDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P++   FT  V +  +G     G   SKR A+  AA    K  
Sbjct: 192 PEYAQIFTARVSLGENGDIIGIGKGSSKRKAQLAAAEAGWKSL 234


>gi|242008637|ref|XP_002425109.1| dicer-1, putative [Pediculus humanus corporis]
 gi|212508774|gb|EEB12371.1| dicer-1, putative [Pediculus humanus corporis]
          Length = 471

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 84/248 (33%), Gaps = 30/248 (12%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           Y+ LE+ +GY F  + LL +A+TH S   +     Y+RLEFLGD IL  L++  +  +F 
Sbjct: 220 YTDLEETLGYTFKRKELLLEAITHPSYVRNRLTPCYQRLEFLGDAILDFLVTVYIQENFK 279

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               G ++   ++LV+  T + ++ + D   ++  +S            IQ     ++  
Sbjct: 280 DMNPGLITDIRSALVNNSTLACLSVKYDFHKYLLYTSSPLNKCIENFVKIQISNNHAVNE 339

Query: 125 ALYLDGG-------------------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165
              +                       E     +    +               +  +  
Sbjct: 340 QALITLEENDAIMAESVTVPKALGDIFESLAGAIFIDSENSLETVWNVFYKIMKKELDEF 399

Query: 166 HAKFGVTPEYKVTFRSGPD-------HDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVA 215
                 T    +    G         ++   +V   I        A G   +K+ A++ A
Sbjct: 400 TVNPPKTAVRVLHEICGEKPFFETTVYEKVVSVKCSIYYKDEEIVAHGFGDNKKDAKKSA 459

Query: 216 AAEVLKRE 223
               LK+ 
Sbjct: 460 CKMALKQI 467


>gi|227545817|ref|ZP_03975866.1| ribonuclease III [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213933|gb|EEI81772.1| ribonuclease III [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 242

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + L + +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF    
Sbjct: 13  NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS +  S +A+ +L +  +I +     +   +   SI  D+VESLI
Sbjct: 72  DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 131

Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A +L+ GI+ A   + +      A  + +                 G          SG
Sbjct: 132 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHMEVSG 191

Query: 183 PDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P++   FT  V +  +G     G   SKR A+  AA    K  
Sbjct: 192 PEYAQIFTARVSLGENGDTIGIGKGSSKRKAQLAAAEAGWKSL 234


>gi|238814324|ref|NP_001154925.1| endoribonuclease Dicer [Danio rerio]
 gi|229485378|sp|Q6TV19|DICER_DANRE RecName: Full=Endoribonuclease Dicer
          Length = 1865

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E +I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1609 FLNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1668

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1669 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1728

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1729 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1788

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1789 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1844

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1845 SAAARRALRSLK 1856



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1275 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1332

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1333 VSNCNLYRLGKKKG 1346


>gi|37266499|gb|AAQ90464.1| Dicer1 [Danio rerio]
          Length = 1243

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 37/252 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E +I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 987  FLNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1046

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI--------------------------- 97
                G L+   ++LV+    + +A + D   +                            
Sbjct: 1047 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1106

Query: 98   -----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                 R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1107 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1166

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 1167 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 1222

Query: 213  QVAAAEVLKREG 224
              AA   L+   
Sbjct: 1223 SAAARRALRSLK 1234



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 653 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 710

Query: 79  VSAETCSQVARELD 92
           VS     ++ ++  
Sbjct: 711 VSNCNLYRLGKKKG 724


>gi|47210543|emb|CAF93935.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 479

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 95/252 (37%), Gaps = 37/252 (14%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   E++I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 223 FENFERKISYTFQNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 282

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111
               G L+   ++LV+    + +A + D   + +  S     V                 
Sbjct: 283 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGM 342

Query: 112 -------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                   D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 343 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 402

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 403 SANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 458

Query: 213 QVAAAEVLKREG 224
             AA   L+   
Sbjct: 459 SAAARRALRSLK 470


>gi|294791394|ref|ZP_06756551.1| ribonuclease III [Scardovia inopinata F0304]
 gi|294457865|gb|EFG26219.1| ribonuclease III [Scardovia inopinata F0304]
          Length = 271

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 108/221 (48%), Gaps = 5/221 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64
             L   +G + +   L  +ALTH S ++ +    +YERLEFLGD +L L+I+  L+ +  
Sbjct: 24  QELFSTLGTSIS-PDLFVEALTHRSFTNEHPLAHNYERLEFLGDAVLELVITETLYKNHP 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           +  EG++S   + +VS E+ S++AR+ L ++ FI +    ++D  ++  SI  DVVESLI
Sbjct: 83  TYSEGQMSRIRSKVVSEESLSEIARDKLKISQFILLGIGEQRDKGAYKPSILCDVVESLI 142

Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A++++ GI+ A   +        A  + +               K  +         SG
Sbjct: 143 GAVFIEQGIDKARQVIHHLLDDNLAFYTTEGPALDWKTAIVIKAHKMNLGEVSYRMEMSG 202

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P++   FT  + I+    A G   SKR A+  AA +   + 
Sbjct: 203 PENHLEFTAYLLINDQDVAWGRGSSKRKAQLDAAQKAWHQL 243


>gi|237711457|ref|ZP_04541938.1| ribonuclease III [Bacteroides sp. 9_1_42FAA]
 gi|229454152|gb|EEO59873.1| ribonuclease III [Bacteroides sp. 9_1_42FAA]
          Length = 283

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 5/216 (2%)

Query: 13  IGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   + S+ E+AL H S+S         + ERLEFLGD IL  +++ +++  F+  +E
Sbjct: 2   LGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIVYKRFEGKRE 61

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   I+ ++           +    +V ++      
Sbjct: 62  GFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTARQSSHNSYMCGNAFEALVGAIYLDRGY 121

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               +               K  +   + K++L EW+           +T      ++P 
Sbjct: 122 R-ACKYFMEHRIIGSYINLEKISRKEVNFKSKLIEWSQKNRFEVTFELITQSHDQGYNPT 180

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           F   V + G++  +G   SK+ ++Q+AA   L +  
Sbjct: 181 FESEVLVEGISGGKGTGYSKKESQQMAARVALGKIK 216


>gi|16331055|ref|NP_441783.1| ribonuclease III [Synechocystis sp. PCC 6803]
 gi|2500554|sp|P74368|RNC1_SYNY3 RecName: Full=Ribonuclease 3 1; AltName: Full=Ribonuclease III 1;
           Short=RNase III 1
 gi|1653550|dbj|BAA18463.1| ribonuclease III [Synechocystis sp. PCC 6803]
          Length = 231

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 112/220 (50%), Gaps = 12/220 (5%)

Query: 19  NRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  L  +ALTH S  + +    SY+RLEFLGD +LG ++  +LF  +    E EL+   +
Sbjct: 11  DPQLKLEALTHRSYCNEHPGTPSYDRLEFLGDAVLGFVVGRILFERYPHFTEAELTRLRS 70

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            LV+    + +AR L +A  IR+S  L +D      SI ADV ESL+ A  LD G+    
Sbjct: 71  QLVNQNQLAYLARFLHIAPEIRLSQSLARDDGQSSPSILADVFESLLGAALLDRGLTAVE 130

Query: 137 TFVDKYWKQRALKSGKFR----------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
            F+ + +     +  K +           D K+ LQ+WA AK    PEY++   SGP H 
Sbjct: 131 DFIQELFVPILEQWEKSQDGRSPKLVPTMDVKSMLQQWALAKTKQLPEYELINTSGPPHA 190

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
             FT  V+++G    QG   SK+ A + AA E LK  G+ 
Sbjct: 191 QEFTFTVKVAGKIHGQGSGPSKQIATKQAALEALKSLGLL 230


>gi|168698810|ref|ZP_02731087.1| ribonuclease III [Gemmata obscuriglobus UQM 2246]
          Length = 215

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/202 (31%), Positives = 106/202 (52%), Gaps = 3/202 (1%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            LL  ALTH+S +++   S ERLEFLGD +LGL+    L+  F   +EG+L+   +++VS
Sbjct: 2   ELLRSALTHTSSANTRAASNERLEFLGDSVLGLVTCEQLYRRFPEYQEGDLTKVKSAVVS 61

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
            +TC++ ++E+ L  F+ +   +         +I A+  ESL+AA++LDGG + A  FV 
Sbjct: 62  RKTCARFSQEIRLGDFLFLGRGVN-SNGEMPLNILANAFESLVAAVFLDGGWDAARDFVL 120

Query: 141 KYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
            +      +        +AK++LQ     ++G TP Y +    GPD++  F V  ++   
Sbjct: 121 DFIDPEVDRVARDAISANAKSQLQTVTQREYGDTPRYFLLDEQGPDNNKCFKVAAQVHDE 180

Query: 199 APAQGMDCSKRAAEQVAAAEVL 220
                   +K+ AE  AA   L
Sbjct: 181 RFPAAWGHTKKEAELKAAMNAL 202


>gi|168177328|pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
           Dicer
          Length = 265

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 95/252 (37%), Gaps = 37/252 (14%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 15  FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPR 74

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ--------- 115
               G L+   ++LV+    + +A + D   + +  S     V       Q         
Sbjct: 75  QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEXQGX 134

Query: 116 -----------------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                   D+ ESL  A+Y D G  +   +   Y   + L    
Sbjct: 135 DSELRRSEEDEEKEEDIEVPKAXGDIFESLAGAIYXDSGXSLEVVWQVYYPXXQPLIEKF 194

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                ++ ++E    +                +D +  V VE+ G    +G+  S R A+
Sbjct: 195 SANVPRSPVRELLEXEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGVGRSYRIAK 250

Query: 213 QVAAAEVLKREG 224
             AA   L+   
Sbjct: 251 SAAARRALRSLK 262


>gi|296535948|ref|ZP_06898097.1| ribonuclease III [Roseomonas cervicalis ATCC 49957]
 gi|296263721|gb|EFH10197.1| ribonuclease III [Roseomonas cervicalis ATCC 49957]
          Length = 234

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 74/204 (36%), Positives = 109/204 (53%), Gaps = 4/204 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65
              R+G+ F ++ LLE+ALTH S ++  ++   S ERLEFLGDR+L L+++  L   F +
Sbjct: 14  FLARLGHEFRDKGLLEQALTHRSAANPRRDMLDSNERLEFLGDRVLALVMAEWLSERFPA 73

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG L  R + LV+AET ++V   + L + +RV     +       ++ AD  E+LI A
Sbjct: 74  EREGALGKRLSVLVAAETLAKVGEAIGLPAMLRVPPAEGRTGLRGRATVIADATEALIGA 133

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LYLD G+EV   F+ + W +           AK+ LQE    +    PEY+    +GP H
Sbjct: 134 LYLDAGLEVPRRFIRREWAEFVAADPTPPMSAKSRLQEHTLGRAEGLPEYRQVSVTGPSH 193

Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209
            P F V V   G   A+G   SKR
Sbjct: 194 QPVFVVAVRAGGRE-AEGQGDSKR 216


>gi|330828482|ref|YP_004391434.1| ribonuclease III [Aeromonas veronii B565]
 gi|328803618|gb|AEB48817.1| Ribonuclease III [Aeromonas veronii B565]
          Length = 223

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 75/212 (35%), Positives = 110/212 (51%), Gaps = 6/212 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             ++ + L+ R+G+ FA+  LL +ALTH S    +    ERLEFLGD IL L+I+  LF+
Sbjct: 1   MNIKMNRLQSRLGHVFADLELLTRALTHRSAGSRH---NERLEFLGDSILSLVIADDLFH 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A EG+LS    +LV  +T +++ RE DL   + +     K       SI AD VE+
Sbjct: 58  RFPQAAEGDLSRMRATLVREKTLAELGREFDLGDHLILGPGELKSGGFRRESILADTVEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A+YLD  +E   T +  ++  R  +      ++D KT LQE         P Y VT 
Sbjct: 118 VIGAVYLDTNLETVRTLLLSWYASRLEEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVTN 177

Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
             G  H+  FTV  ++ GL  P  G+  S+R 
Sbjct: 178 VKGEAHNQEFTVQCDVEGLDGPLVGVGTSRRK 209


>gi|145300361|ref|YP_001143202.1| ribonuclease III [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853133|gb|ABO91454.1| ribonuclease III [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 223

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 73/212 (34%), Positives = 109/212 (51%), Gaps = 6/212 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             ++ + L+ R+G+ F ++ LL +ALTH S    +    ERLEFLGD IL L+I+  LF+
Sbjct: 1   MNIKMNRLQSRLGHVFHDKELLTRALTHRSAGSRH---NERLEFLGDSILSLVIADALFH 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A EG+LS    +LV  +T +++ RE DL   + +     K       SI AD VE+
Sbjct: 58  RFPQAAEGDLSRMRATLVREKTLAELGREFDLGDDLILGPGELKSGGFRRESILADTVEA 117

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A+YLD  +E     +  ++  R  +      ++D KT LQE         P Y VT 
Sbjct: 118 VIGAVYLDTDLEAVRVLLLSWYASRLDEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVTN 177

Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
             G  H+  FTV  ++ GL  P  G+  S+R 
Sbjct: 178 VKGEAHNQEFTVQCDVEGLDGPLVGVGTSRRK 209


>gi|312890952|ref|ZP_07750480.1| ribonuclease III [Mucilaginibacter paludis DSM 18603]
 gi|311296568|gb|EFQ73709.1| ribonuclease III [Mucilaginibacter paludis DSM 18603]
          Length = 241

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 102/231 (44%), Gaps = 10/231 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57
           +      L+  +G+   N SL   A  H S++       + S ERLEFLGD ILG +++ 
Sbjct: 14  NRKYVKALKNLLGFVPGNLSLYRLAFRHKSVAQNVKKGVKNSNERLEFLGDAILGCVVAE 73

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +LF  +    EG L+   + +VS    +Q+AR+L       +  D R    +   S+  D
Sbjct: 74  VLFKLYPYEDEGFLTELRSKIVSRVNLNQLARKLGFEQ--LIEYDSRMVGSTRQGSLLGD 131

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPE 174
             E+L+ A+YLD G +    F+  +  +  +      +   + K++L EW          
Sbjct: 132 AFEALVGAVYLDKGYDFTKNFLVNHIIKSHIDIHKLEQTESNFKSKLIEWCQRHSKDVSF 191

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             V  + G      FT+   I G     G + +K+ AE++AA +  +   I
Sbjct: 192 DLVENKEGESP-KLFTIQASIDGEVLGVGKEFNKKNAEKLAAEKACEALSI 241


>gi|269978187|ref|ZP_06185137.1| ribonuclease III [Mobiluncus mulieris 28-1]
 gi|306818562|ref|ZP_07452285.1| ribonuclease III [Mobiluncus mulieris ATCC 35239]
 gi|307700841|ref|ZP_07637866.1| ribonuclease III [Mobiluncus mulieris FB024-16]
 gi|269933696|gb|EEZ90280.1| ribonuclease III [Mobiluncus mulieris 28-1]
 gi|304648735|gb|EFM46037.1| ribonuclease III [Mobiluncus mulieris ATCC 35239]
 gi|307613836|gb|EFN93080.1| ribonuclease III [Mobiluncus mulieris FB024-16]
          Length = 269

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 6/202 (2%)

Query: 19  NRSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           +  LL  A+TH S SH + ++      ERLEFLGD +L ++++  L+ +F    EG L+ 
Sbjct: 35  DPDLLVLAMTHRSFSHEHGKTGSRGTNERLEFLGDAVLQIIVTEYLYRNFPDEPEGTLAQ 94

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              + VS    ++VAR++ L  ++R+     +       SI +D +E+LI A +L  G+ 
Sbjct: 95  MRAATVSQTPLAEVARKIHLGEYLRLGVGEDRQGGRDKDSILSDTLEALIGATFLSCGLS 154

Query: 134 VAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           V    V+++ ++       +          +   +   +         +GPDH   F+  
Sbjct: 155 VTRVVVERHLRRFLRNAPRRAVTLDWKTTLQELLSAADLGEVTYEVVATGPDHQKHFSAQ 214

Query: 193 VEISGLAPAQGMDCSKRAAEQV 214
             + G    +G   SK+ AE  
Sbjct: 215 ALVEGENWGEGQGSSKKIAEHQ 236


>gi|325963729|ref|YP_004241635.1| RNAse III [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469816|gb|ADX73501.1| RNAse III [Arthrobacter phenanthrenivorans Sphe3]
          Length = 242

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 93/212 (43%), Gaps = 6/212 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           MS+     L KR+G  F +   L  ALTH S ++      + ERLEFLGD ILG  ++  
Sbjct: 1   MSST--EELLKRLGV-FIDAGTLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDA 57

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+       EG+L+ R +++VS    + + R L +  +I +    +        SI AD 
Sbjct: 58  LYRDNPDLPEGDLAKRRSAVVSTRALAGIGRSLGIGEYIYLGQGEKLTQGKNKASILADT 117

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKV 177
           +E+LI A Y+   IE A   V +        +             +   A   +   +  
Sbjct: 118 MEALIGATYVSNDIETARQLVMRLIGPLLKDAAALGAGTDWKTSIQELAASRQLGTIHYA 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              +GPDH   FT V+ + G A  +G   SK+
Sbjct: 178 VDGTGPDHARTFTAVLHVGGTAYGKGSGHSKK 209


>gi|326316027|ref|YP_004233699.1| ribonuclease 3 [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372863|gb|ADX45132.1| Ribonuclease 3 [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 228

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 76/216 (35%), Positives = 109/216 (50%), Gaps = 6/216 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M +   S L+ R+ +AF++ SLL++A+TH S S    +  ERLEFLGD +L L +S+LL+
Sbjct: 1   MVSPSLSALQDRLQHAFSDPSLLQRAITHRSFS---ADHNERLEFLGDSVLSLAVSSLLY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+LS    +LV  E    +A  L L   +R+     K       SI AD +E
Sbjct: 58  QRLRDLPEGDLSRVRANLVRQEALHDLALGLQLPQVLRLGEGETKSGGKQRPSILADALE 117

Query: 121 SLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD G + A   V       +   +     +DAKT LQEW   +    P+Y+V 
Sbjct: 118 ALIGAVYLDAGYQCAEALVHRLYKDVEINPRMQAAEKDAKTALQEWLQGRKMKLPQYRVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
              G  H   F V  +I  L   + G+  S+RA EQ
Sbjct: 178 ATVGAAHRQTFDVECDIPELGLTERGIGGSRRAGEQ 213


>gi|110598670|ref|ZP_01386935.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031]
 gi|110339723|gb|EAT58233.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031]
          Length = 270

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 106/222 (47%), Gaps = 7/222 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLF 60
            + L + +G   +N  L + ALTH S+ H        ES +RLEFLGD +LGLLIS  LF
Sbjct: 36  IAYLRRLVGEPASNLLLYQTALTHRSVVHDPATQHLVESNQRLEFLGDSVLGLLISDYLF 95

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  + EGELS   + +V+ ++ +  A  ++LA ++       ++  +   S  AD  E
Sbjct: 96  RTFPGSAEGELSSNRSKIVNRKSLAGFAASMNLADYLLTGESADRNKITSSDSALADAFE 155

Query: 121 SLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           SL  A+YLD GI              +      +   + K+ L E+  ++    P Y V 
Sbjct: 156 SLTGAIYLDKGILAAENFIRKHVLEHENFRMIVEAEHNYKSRLIEYTQSRHLPMPVYSVL 215

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              G +H+ +FTV V  S      G    K+ AEQ+AA E L
Sbjct: 216 EECGAEHEKQFTVGVSCSDRHLGSGTARRKKDAEQLAAKEAL 257


>gi|154509007|ref|ZP_02044649.1| hypothetical protein ACTODO_01524 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798641|gb|EDN81061.1| hypothetical protein ACTODO_01524 [Actinomyces odontolyticus ATCC
           17982]
          Length = 240

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 5/207 (2%)

Query: 22  LLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ AL H S ++      + ERLEFLGD +L ++I+  L+  +    E +LS    + V
Sbjct: 30  LLQLALVHRSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRAATV 89

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S +  +  AR + L  F+ +             SI +D  E+LI A YL  G+E A   +
Sbjct: 90  SQQPLAAAARRIGLGDFVFLGKGESMHGGRDKDSILSDTFEALIGATYLTSGLEEARRVI 149

Query: 140 -DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
            ++          + +      +        G+          GPDH   FT    +S  
Sbjct: 150 LERLSFLLVDAPSRGQHQDWKTILIEYSQAHGLGEVSYEVEGEGPDHQRVFTARAFVSER 209

Query: 199 --APAQGMDCSKRAAEQVAAAEVLKRE 223
                 G   SK+ AE  AA + + R 
Sbjct: 210 PDPIGSGQASSKKHAENAAAQDAMSRL 236


>gi|86158075|ref|YP_464860.1| ribonuclease III [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774586|gb|ABC81423.1| RNAse III [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 385

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 74/212 (34%), Positives = 115/212 (54%), Gaps = 6/212 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHF 63
            LE R+G A A+R     ALTH S  + ++E      ERLEFLGD ++ L +S  L   F
Sbjct: 27  ALEARLGLAVADREAALAALTHKSYVNEHREDGLQDNERLEFLGDAVIDLAVSHRLMERF 86

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            SA+EG+LS    ++V  +  +++AR LDL + +R+            +S+ AD +E++I
Sbjct: 87  PSAREGDLSKMRAAVVDEQGLAEMARTLDLGALLRLGRGEELTGGRQKSSLLADAMEAVI 146

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+Y   G+    +FVD++  +   ++      RD KT+LQE + ++   TP Y+V    
Sbjct: 147 AAIYRGQGLPAVLSFVDRFLGEAFARAAAGTLDRDFKTQLQELSQSRLRATPRYRVVAEH 206

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           GPDH   F V  ++ G    +G   SK+ AEQ
Sbjct: 207 GPDHSKTFEVETDLRGEVMGRGAGRSKKDAEQ 238


>gi|304382096|ref|ZP_07364607.1| ribonuclease 3 [Prevotella marshii DSM 16973]
 gi|304336694|gb|EFM02919.1| ribonuclease 3 [Prevotella marshii DSM 16973]
          Length = 359

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           +  L + IG+     S  ++AL H S++    +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  FLALRRIIGFYPHEISYYQQALMHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  ET +++A+E+ + + I  S            +    +V +
Sbjct: 80  HFPGKREGFLTNTRSKLVQRETLNRLAKEMGINNLILSSGRTSSHNSYMGGNAFEALVGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +      +  ++     +          + K     K++L EW+           V  + 
Sbjct: 140 IYLDKGYNACMKFMNHRILGQIINLDKMAYKEVNF-KSKLIEWSQKNRIRLDFELVEQKK 198

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +P FT  V +  +    G   SK+ ++Q A+ + LK+ 
Sbjct: 199 DESGNPVFTCKVVLEDVEGCCGTGFSKKESQQTASEKTLKKL 240


>gi|154483581|ref|ZP_02026029.1| hypothetical protein EUBVEN_01285 [Eubacterium ventriosum ATCC
           27560]
 gi|149735491|gb|EDM51377.1| hypothetical protein EUBVEN_01285 [Eubacterium ventriosum ATCC
           27560]
          Length = 190

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/186 (35%), Positives = 97/186 (52%), Gaps = 1/186 (0%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           +  ERLEFLGD +L LL S  L+ +     EG+++    SLV   T +  ARE+DL  FI
Sbjct: 2   KDNERLEFLGDAVLELLSSEYLYKNMKDMPEGKMTKLRASLVCEPTLAMDAREIDLEDFI 61

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
            +     +       SI +D  E+LI A++LDGGIE A  F+ K+      K  K   D+
Sbjct: 62  YLGKGEDETGGRKRDSIVSDAFEALIGAIFLDGGIEEAKYFILKFALNDIEKK-KLFYDS 120

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           KT LQE  ++       Y++    GPDH+  +    +++G    +G   +K+AAEQ AA 
Sbjct: 121 KTVLQERVNSVKNGNLVYEIIKEWGPDHNKTYEAAAKLNGKIIGKGQGHTKKAAEQQAAF 180

Query: 218 EVLKRE 223
           + LK  
Sbjct: 181 DALKTL 186


>gi|167752469|ref|ZP_02424596.1| hypothetical protein ALIPUT_00720 [Alistipes putredinis DSM 17216]
 gi|167659538|gb|EDS03668.1| hypothetical protein ALIPUT_00720 [Alistipes putredinis DSM 17216]
          Length = 264

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/218 (27%), Positives = 91/218 (41%), Gaps = 11/218 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61
           Y  +++  G+   N  L + AL H S S       Q + ERLEFLGD ++  + S  L+ 
Sbjct: 20  YRIIDELFGFVPHNIELYKLALIHKSASLVLADGRQINNERLEFLGDAVIEAVTSDYLYI 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F   +EG L+   + +VS ++ + +AR + L  ++           +    I  D  E+
Sbjct: 80  EFPDRQEGFLTQLRSKIVSRQSLNTIARTIGLDRYVIA----NPTGSTNQKHIYGDAFEA 135

Query: 122 LIAALYLDGGIEVAGT---FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +I A+YLD G E A         Y             D K+ L EW            V 
Sbjct: 136 MIGAIYLDQGYEFANRLLINNIYYRYLNLDNLTDEETDFKSRLIEWCQKTHHTIAFETVH 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            R+   + P F   V I G+    G   SK+ AEQ AA
Sbjct: 196 GRNYSSNHPIFDATVVIDGIRVGHGQGESKKEAEQCAA 233


>gi|326387678|ref|ZP_08209284.1| ribonuclease III [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207724|gb|EGD58535.1| ribonuclease III [Novosphingobium nitrogenifigens DSM 19370]
          Length = 233

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 83/216 (38%), Positives = 110/216 (50%), Gaps = 3/216 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + L    G+    + L  +ALTH S+       Y+RLEFLGDR+LG L      +   S
Sbjct: 18  LAFLTAVFGHEPIRQDLWHEALTHGSLGE--ARDYQRLEFLGDRVLG-LAVAEWLHGDSS 74

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EG+LS R N+LVS ETC+ VAR L +A  +R+    R D  +   +I  DV+E+LI A
Sbjct: 75  AAEGKLSQRLNALVSRETCADVARTLGIAPHMRLGKQARDDGGADSDNILGDVMEALIGA 134

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           L+L+ G   A  FV + W          R+  K  LQEWA       P Y +  R GPDH
Sbjct: 135 LFLERGFPAARDFVRRAWAAPMAAGAGQRKHPKAALQEWAAGNKRKPPIYTLVAREGPDH 194

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              FTV V + G+        SK+ AE  AA E +K
Sbjct: 195 AATFTVSVTVKGVGEMTARGSSKQEAETSAAREFMK 230


>gi|313768337|ref|YP_004062017.1| hypothetical protein MpV1_134 [Micromonas sp. RCC1109 virus MpV1]
 gi|312599033|gb|ADQ91057.1| hypothetical protein MpV1_134 [Micromonas sp. RCC1109 virus MpV1]
          Length = 235

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 102/211 (48%), Gaps = 4/211 (1%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           E+ +G    N  L +KA TH S    Y+   ES+E LEF+GD +LG +I+  LF+ F+S 
Sbjct: 11  EQLVGTKIKNLDLYQKAFTHKSALKEYEQFTESFETLEFIGDSVLGFVITKFLFDRFESR 70

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG L+     LV  ET +++A  L L   + +     ++  +    I  DV E+LI A+
Sbjct: 71  QEGFLTKARTKLVRGETLARIANALGLNELVIMDEKGMRNGWNNNPKILEDVFEALIGAI 130

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y+D G+  A  F+ + ++   L             ++       V       +R    H+
Sbjct: 131 YMDIGLIHAKEFILRIYQDPKLVDLNSIMVD-DNYKDHLMRHCQVNNWQLPEYRVAAHHE 189

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
             F + + I+ L  ++G+  SK+ AEQ AA 
Sbjct: 190 GLFYIDIYINNLFCSRGVAKSKKQAEQNAAQ 220


>gi|87199824|ref|YP_497081.1| ribonuclease III [Novosphingobium aromaticivorans DSM 12444]
 gi|87135505|gb|ABD26247.1| RNAse III [Novosphingobium aromaticivorans DSM 12444]
          Length = 252

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 83/202 (41%), Positives = 111/202 (54%), Gaps = 3/202 (1%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             +  +ALTH S+       Y+RLEFLGDR+LGL I+    +    A EG+LS R N+LV
Sbjct: 51  PEIWAEALTHGSMGEP--RDYQRLEFLGDRVLGLAIAD-WLHEKSDAAEGKLSQRLNALV 107

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S ETC+ VAR + LA  IR+    R D  +   +I  DV+E+LI AL+++ G E A  FV
Sbjct: 108 SRETCADVARTIGLAGHIRLGKQARDDGGAQSDNILGDVMEALIGALFVERGFEAARKFV 167

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K W++  L     R+  K  LQEWA       P Y +  R GPDH   FTV VE+ G+ 
Sbjct: 168 RKAWEKPMLSGTGQRKHPKAALQEWAAGNRRKPPVYTLVSREGPDHAATFTVSVEVKGVG 227

Query: 200 PAQGMDCSKRAAEQVAAAEVLK 221
            A     SK+ AE  AA   ++
Sbjct: 228 EASARGSSKQEAETAAARAFMQ 249


>gi|73541939|ref|YP_296459.1| ribonuclease III [Ralstonia eutropha JMP134]
 gi|90101640|sp|Q46Z18|RNC_RALEJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|72119352|gb|AAZ61615.1| RNAse III [Ralstonia eutropha JMP134]
          Length = 256

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 6/209 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S S    +  ERLEFLGD +L   ++ +LF  F
Sbjct: 1   MNLDALQQRLGYRFSKPELLQQALTHRSHS---AQHNERLEFLGDSVLNCAVADMLFGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L+  +R+     K       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLSEVLRLGEGELKSGGFRRPSILADALEAIV 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G E A T + K +     +       +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDAGFEAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKR 209
           G  H  +F V   +  L     G   S+R
Sbjct: 178 GAAHSQQFEVECMVPKLEVRVFGTGASRR 206


>gi|224282434|ref|ZP_03645756.1| ribonuclease III [Bifidobacterium bifidum NCIMB 41171]
 gi|310286876|ref|YP_003938134.1| Ribonuclease III [Bifidobacterium bifidum S17]
 gi|311063777|ref|YP_003970502.1| ribonuclease III [Bifidobacterium bifidum PRL2010]
 gi|313139580|ref|ZP_07801773.1| ribonuclease 3 [Bifidobacterium bifidum NCIMB 41171]
 gi|309250812|gb|ADO52560.1| Ribonuclease III [Bifidobacterium bifidum S17]
 gi|310866096|gb|ADP35465.1| RncS Ribonuclease III [Bifidobacterium bifidum PRL2010]
 gi|313132090|gb|EFR49707.1| ribonuclease 3 [Bifidobacterium bifidum NCIMB 41171]
          Length = 255

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64
             L   +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF    
Sbjct: 8   EELFSALGVTIS-PDLLIQALTHRSFSHEHPGTSNYERLEFLGDAVLELVSTETLFTLHP 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS E  S +AR+ L +  FI +     +   +  +SI  D+VESLI
Sbjct: 67  DMTEGQLAKMRAKAVSEEALSAIARDKLHVGPFILLGHGEAESGGAEKSSILCDIVESLI 126

Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A +L+ GIE A   V +      A  + +               + G+         SG
Sbjct: 127 GATFLEHGIEGARKVVHRLIDDTLAEVATEGPALDWKTSLTVKAHELGLDEPRYRMSVSG 186

Query: 183 PDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P++   FT    I        +G   SKR A+  AA       
Sbjct: 187 PEYAQEFTAKATIGPKDDIIGKGTGTSKRKAQLAAAEMAWHEL 229


>gi|188995567|ref|YP_001929819.1| putative ribonuclease III [Porphyromonas gingivalis ATCC 33277]
 gi|188595247|dbj|BAG34222.1| putative ribonuclease III [Porphyromonas gingivalis ATCC 33277]
          Length = 261

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           L   +G+  +  +  E A  HSS S      Y+ + ERLEFLGD +L   IS  L+    
Sbjct: 26  LSDILGFKPSRIAFYELAFRHSSCSLVDDEGYRLNNERLEFLGDSVLATAISGYLYRQHP 85

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG++S R +++V  +  + VA++L L  F+ V  ++ +     M +    ++ ++  
Sbjct: 86  HWDEGDMSQRRSAIVKRQINNVVAKKLRLDRFLIVRGEISQMSSDIMGNTLEALIGAIYL 145

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
                   +   T     + +          + K+ L EWA           ++      
Sbjct: 146 DKGYQAAEKFVLTRFIPVFHELEDSLTDTTTNYKSLLLEWAQKHHLNLEFRLISEPKRAH 205

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               F   V + G     G+  +K+ A Q AA + L++  
Sbjct: 206 G--HFNYAVFVDGHRIGSGIGMNKKEAHQNAAHDALEKLK 243


>gi|298253314|ref|ZP_06977106.1| dsRNA-specific ribonuclease [Gardnerella vaginalis 5-1]
 gi|297532709|gb|EFH71595.1| dsRNA-specific ribonuclease [Gardnerella vaginalis 5-1]
          Length = 276

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64
             L   +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF+   
Sbjct: 49  QELLNALGTTIS-PDLLVEALTHRSFSHEHPGTRNYERLEFLGDAVLELVSTETLFSAHP 107

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS    S VAR +L + ++I +     +   +   SI  D+VE+LI
Sbjct: 108 DMTEGQLAKMRAKAVSEWALSAVAREKLHVGAYILLGRGEMEQGGNNKDSILCDIVEALI 167

Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A +++ GI+ A   V +      A    +                 G+         SG
Sbjct: 168 GATFVEHGIDEARRVVHRLIDDTLAEVLTEGPALDWKTSLTVKAHDMGLEDPEYRMAVSG 227

Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P++ P F     +           G   SKR A+  AA       
Sbjct: 228 PEYAPVFEARAVLARKDGDEVLGVGSGSSKRKAQLAAAEIAWHAL 272


>gi|297242888|ref|ZP_06926826.1| dsRNA-specific ribonuclease [Gardnerella vaginalis AMD]
 gi|296889099|gb|EFH27833.1| dsRNA-specific ribonuclease [Gardnerella vaginalis AMD]
          Length = 273

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64
             L   +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF+   
Sbjct: 46  QELLNALGTTIS-PDLLVEALTHRSFSHEHPGTRNYERLEFLGDAVLELVSTETLFSAHP 104

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS    S VAR +L + ++I +     +   +   SI  D+VE+LI
Sbjct: 105 DMTEGQLAKMRAKAVSEWALSAVAREKLHVGAYILLGRGEMEQGGNNKDSILCDIVEALI 164

Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A +++ GI+ A   V +      A    +                 G+         SG
Sbjct: 165 GATFVEHGIDEARRVVHRLIDDTLAEVLTEGPALDWKTSLTVKAHDMGLEDPEYRMAVSG 224

Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P++ P F     +           G   SKR A+  AA       
Sbjct: 225 PEYAPVFEARAVLAHKDGDEVLGVGSGSSKRKAQLAAAEIAWHAL 269


>gi|283782836|ref|YP_003373590.1| ribonuclease III [Gardnerella vaginalis 409-05]
 gi|283442034|gb|ADB14500.1| ribonuclease III [Gardnerella vaginalis 409-05]
          Length = 242

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64
             L   +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF+   
Sbjct: 15  QELLNALGTTIS-PDLLVEALTHRSFSHEHPGTRNYERLEFLGDAVLELVSTETLFSAHP 73

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS    S VAR +L + ++I +     +   +   SI  D+VE+LI
Sbjct: 74  DMTEGQLAKMRAKAVSEWALSAVAREKLHVGAYILLGRGEMEQGGNNKDSILCDIVEALI 133

Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A +++ GI+ A   V +      A    +                 G+         SG
Sbjct: 134 GATFVEHGIDEARRVVHRLIDDTLAEVLTEGPALDWKTSLTVKAHDMGLEDPEYRMAVSG 193

Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P++ P F     +           G   SKR A+  AA       
Sbjct: 194 PEYAPVFEARAVLAHKDGDEVLGVGSGSSKRKAQLAAAEIAWHAL 238


>gi|170033786|ref|XP_001844757.1| endoribonuclease Dcr-1 [Culex quinquefasciatus]
 gi|167874834|gb|EDS38217.1| endoribonuclease Dcr-1 [Culex quinquefasciatus]
          Length = 2270

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 89/248 (35%), Gaps = 29/248 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS  E  +GY F +RS L +A+TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2014 YSAFEDSLGYRFQDRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2073

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A   D   + R  S    DV      IQ D   S+  
Sbjct: 2074 QHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHSISE 2133

Query: 125  ALYLDGGIEVA---------------------GTFVDKYWKQRALKSGKFRRDAKTELQE 163
              YL    E                                    +  +     + E   
Sbjct: 2134 EYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMSLDAVWRVYRGMMGPEIEQFS 2193

Query: 164  WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +  K  +         T + G         R  V VE+ G    +G+  + R A+  AA
Sbjct: 2194 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGTFRGIGRNYRIAKCTAA 2253

Query: 217  AEVLKREG 224
               L++  
Sbjct: 2254 KCALRQLK 2261



 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1731 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYENVHEGKLSHLRSKQV 1788

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            S     ++ R   L   +  +     D            +E
Sbjct: 1789 SNLNLYRLGRRKVLGESMIATKFEPHDNWLPPCYYVPKELE 1829


>gi|85373795|ref|YP_457857.1| ribonuclease III [Erythrobacter litoralis HTCC2594]
 gi|84786878|gb|ABC63060.1| ribonuclease III [Erythrobacter litoralis HTCC2594]
          Length = 223

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 111/211 (52%), Gaps = 3/211 (1%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           G+A  +  L  +ALTH S        Y+RLEFLGDR+LGL IS  LF       EG L+ 
Sbjct: 16  GFAVEDDELWLEALTHGSTGAE--RDYQRLEFLGDRVLGLAISDHLFRKVGG-SEGALAQ 72

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           R N+LVS   C+++ R + L+  + +    R+D  +  T+I  DVVE+L+ A YLD G  
Sbjct: 73  RLNALVSKGACAKIGRRIGLSDHLVLGKQAREDGAAQSTNILGDVVEALLGANYLDAGFG 132

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
                V   W +         +  K+ LQEWA       P+Y++  RSGPDH   FTV V
Sbjct: 133 PTCALVHLLWDEDLNGMAGRSKHPKSALQEWAAGNQRRPPQYELVDRSGPDHAAIFTVRV 192

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           E+  +  A+    SK+ AE  AA + +++ G
Sbjct: 193 EVHKVGAAEATASSKQEAETEAAKKFMEQFG 223


>gi|225460893|ref|XP_002278706.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 364

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 101/243 (41%), Gaps = 27/243 (11%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M A     +E+ I Y F N+ LLE+ALTHSS +     SY+RLEF+GD  LG  +S  +F
Sbjct: 28  MEA-SVEAVERIINYKFRNKKLLEEALTHSSYTD--SASYQRLEFIGDAALGCALSNYVF 84

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111
             + S   G+LS+   + +S E  ++VA  + L  ++R ++    D              
Sbjct: 85  LAYPSLDPGQLSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQEEGD 144

Query: 112 ----------TSIQADVVESLIAALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTE 160
                         AD+VES+ AA+Y+D   +      + +   +  +     ++  +  
Sbjct: 145 SVLYGGSVKAPKFLADIVESVAAAIYVDCNFDLQVLWVIFRGLLEPIVTHEALQQQPQPV 204

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              +   +          +R G  +       V + G   A G    K  A+  AA E L
Sbjct: 205 TLLYELCQKDGKHVDIKHWRKGSKN----IASVYVGGKFIASGSSDEKEIAKLNAAKEAL 260

Query: 221 KRE 223
           ++ 
Sbjct: 261 QKL 263



 Score = 36.8 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSK---RAA 211
           K +L E+   K    P Y++    GP H+  F   V I    G+   QG   +K   + A
Sbjct: 289 KQKLHEFCSKKKWPKPSYRIEKEVGPAHEKGFLCSVHIETVDGVLVMQGD--TKPRVKDA 346

Query: 212 EQVAAAEVL 220
           E  AA+ ++
Sbjct: 347 ENSAASFMI 355


>gi|297737474|emb|CBI26675.3| unnamed protein product [Vitis vinifera]
          Length = 337

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 101/243 (41%), Gaps = 27/243 (11%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M A     +E+ I Y F N+ LLE+ALTHSS +     SY+RLEF+GD  LG  +S  +F
Sbjct: 1   MEA-SVEAVERIINYKFRNKKLLEEALTHSSYTD--SASYQRLEFIGDAALGCALSNYVF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111
             + S   G+LS+   + +S E  ++VA  + L  ++R ++    D              
Sbjct: 58  LAYPSLDPGQLSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQEEGD 117

Query: 112 ----------TSIQADVVESLIAALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTE 160
                         AD+VES+ AA+Y+D   +      + +   +  +     ++  +  
Sbjct: 118 SVLYGGSVKAPKFLADIVESVAAAIYVDCNFDLQVLWVIFRGLLEPIVTHEALQQQPQPV 177

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              +   +          +R G  +       V + G   A G    K  A+  AA E L
Sbjct: 178 TLLYELCQKDGKHVDIKHWRKGSKN----IASVYVGGKFIASGSSDEKEIAKLNAAKEAL 233

Query: 221 KRE 223
           ++ 
Sbjct: 234 QKL 236



 Score = 36.8 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSK---RAA 211
           K +L E+   K    P Y++    GP H+  F   V I    G+   QG   +K   + A
Sbjct: 262 KQKLHEFCSKKKWPKPSYRIEKEVGPAHEKGFLCSVHIETVDGVLVMQGD--TKPRVKDA 319

Query: 212 EQVAAAEVL 220
           E  AA+ ++
Sbjct: 320 ENSAASFMI 328


>gi|34541386|ref|NP_905865.1| ribonuclease III [Porphyromonas gingivalis W83]
 gi|34397703|gb|AAQ66764.1| ribonuclease III [Porphyromonas gingivalis W83]
          Length = 237

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           L   +G+  +  +  E A  HSS S      Y+ + ERLEFLGD +L   IS  L+    
Sbjct: 2   LSDILGFKPSRIAFYELAFRHSSCSLVDDEGYRLNNERLEFLGDSVLATAISGYLYRQHP 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG++S R +++V  +  + VA++L L  F+ V  ++ +     M +    ++ ++  
Sbjct: 62  HWDEGDMSQRRSAIVKRQINNVVAKKLRLDRFLIVRGEISQMSSDIMGNTLEALIGAIYL 121

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
                   +   T     + +          + K+ L EWA           ++      
Sbjct: 122 DKGYQAAEKFVLTRFIPVFHELEDSLTDTTTNYKSLLLEWAQKHHLNLEFRLISEPKRAH 181

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               F   V + G     G+  +K+ A Q AA + L++  
Sbjct: 182 G--HFNYAVFVDGHRIGSGIGMNKKEAHQNAAHDALEKLK 219


>gi|255016282|ref|ZP_05288408.1| ribonuclease III [Bacteroides sp. 2_1_7]
          Length = 256

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 96/220 (43%), Gaps = 5/220 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63
           +L K +G+   N  + E+AL H S S    +    + ERLEFLGD IL   ++ +++  +
Sbjct: 2   SLSKILGFYPDNLQIYEQALLHKSSSVETGDGKWLNNERLEFLGDGILDAAVADIVYKRY 61

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            + +EG L+   + +V  ET ++VA +L L   +  S+ +         +    ++ ++ 
Sbjct: 62  PNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYSTKINSHNNHMYGNALEALIGAIY 121

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
                D   +     + + +    +   K     K+ L EW+           +   +  
Sbjct: 122 LDQGYDVCYKFIRDVMIEKYIDVDMLVRKEINF-KSNLIEWSQKNKISISFDLIESFTDH 180

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           D +P F   +++ G     G+  SK+ ++Q A+   +KR 
Sbjct: 181 DGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKRL 220


>gi|304413540|ref|ZP_07395013.1| ribonuclease III [Candidatus Regiella insecticola LSR1]
 gi|304284383|gb|EFL92776.1| ribonuclease III [Candidatus Regiella insecticola LSR1]
          Length = 235

 Score =  110 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 15/221 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  +    LE R+GYAF  R+LL +ALTH S S ++    ERLEFLGD IL   I+  L+
Sbjct: 1   MDPIIIKKLETRLGYAFKQRALLVQALTHRSASRTH---NERLEFLGDAILNFFIAKALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV  +T +++A E DL+ ++ +     K+  S   SI AD VE
Sbjct: 58  QRFSDINEGDMSRMRATLVRGKTLAEIAHEFDLSDYLYLGKGELKNGKSPRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++++R   +  G+ ++D KT LQE+  +     P Y VT
Sbjct: 118 ALIGGIFLDSDIQTTERLLLTWYEKRLAEISPGEKQKDPKTRLQEYLQSHHLPLPSYLVT 177

Query: 179 FRSGPDHDPRFTVVVEI----------SGLAPAQGMDCSKR 209
              G  H+ +F +  +                 +G   S+R
Sbjct: 178 QVHGEAHEQKFIIHCKFIIPCRENNLTKQEITVRGCGLSRR 218


>gi|239917409|ref|YP_002956967.1| RNAse III [Micrococcus luteus NCTC 2665]
 gi|239838616|gb|ACS30413.1| RNAse III [Micrococcus luteus NCTC 2665]
          Length = 220

 Score =  110 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 23  LEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           LE+ALTH S ++      + ERLEFLGD +LG +++  +F  +    EG+L+ R  ++VS
Sbjct: 8   LERALTHRSFAYEQGGLPTNERLEFLGDSVLGYVVTDHIFTVYPDLAEGDLARRRAAVVS 67

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
               ++VAR + +  F+R+ +  R+   +   SI AD +E+LI A+Y+D G   A   V 
Sbjct: 68  TRALAKVARRIGIGPFVRLGTGERRTGGADKDSILADTLEALIGAVYVDHGAVAAAALVH 127

Query: 141 KYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
           ++      +            +   A ++ G+          GP HDPR+   + +    
Sbjct: 128 RHVVPLLDEPDLLRESTDWKTVVAEAASRHGLGAVRYAIEGQGPAHDPRYRATLVVGERE 187

Query: 200 PAQGMDCSKRAAEQVAAAE---VLK 221
               +  SK+ AE+ AAA     L+
Sbjct: 188 YGSAVASSKKQAERDAAAASWPALE 212


>gi|293192364|ref|ZP_06609475.1| ribonuclease III [Actinomyces odontolyticus F0309]
 gi|292820279|gb|EFF79273.1| ribonuclease III [Actinomyces odontolyticus F0309]
          Length = 240

 Score =  110 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 5/207 (2%)

Query: 22  LLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ AL H S ++      + ERLEFLGD +L ++I+  L+  +    E +LS    + V
Sbjct: 30  LLQLALVHRSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRAATV 89

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S +  +  AR + L  F+ +             SI +D  E+LI A YL  G+E A   +
Sbjct: 90  SQQPLAAAARRIGLGDFVFLGKGESMHGGRDKDSILSDTFEALIGATYLTSGLEEARRVI 149

Query: 140 -DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
            ++          + +      +        G+          GPDH   FT    +S  
Sbjct: 150 LERLSFLLVDAPSRGQHQDWKTILIEYSQAQGLGEVSYEVEGEGPDHQRVFTARAFVSER 209

Query: 199 --APAQGMDCSKRAAEQVAAAEVLKRE 223
                 G   SK+ AE  AA + + R 
Sbjct: 210 PDPIGSGQASSKKHAENAAAQDAMSRL 236


>gi|213389868|gb|ACJ45995.1| putative ribonuclease III [Palm lethal yellowing phytoplasma]
          Length = 207

 Score =  110 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 83/209 (39%), Gaps = 7/209 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLF 60
           +    L +R+     N SL   ALTHSS ++         ERLEFLGD ++  L++  L+
Sbjct: 1   MPLQKLFQRLKIEPKNISLYINALTHSSYANESPFQNNDNERLEFLGDAVINFLMANYLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              +   EG ++ +    V  ++    A E+DL  +I +    +K       SI AD  E
Sbjct: 61  RK-NKYDEGSMTKKRAQAVCIDSLLIYANEIDLKEYILLGKGEQKRYIHNY-SIIADAFE 118

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +L  A+YLD G E               K  K          +        T  YK+   
Sbjct: 119 ALFGAIYLDLGYEQVKKTFYYVVLPCLNKIIKIID--YKTQLQEIVQAEKQTIHYKIIEE 176

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +G  H+  F   V ++      G   +K+
Sbjct: 177 TGLAHEKEFIAEVYLNNKLLGSGTGKTKK 205


>gi|194290152|ref|YP_002006059.1| ribonuclease iii [Cupriavidus taiwanensis LMG 19424]
 gi|238692743|sp|B3R1Z9|RNC_CUPTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|193223987|emb|CAQ69996.1| Ribonuclease III [Cupriavidus taiwanensis LMG 19424]
          Length = 256

 Score =  110 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 6/209 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S S    +  ERLEFLGD +L   ++ +L+  F
Sbjct: 1   MNLDALQQRLGYRFSKPELLQQALTHRSHS---AQHNERLEFLGDSVLNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L+  +R+     K       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLSDTLRLGEGELKSGGFRRPSILADALEAIV 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   + K +     +       +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDAGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKR 209
           G  H  +F V   +  L     G   S+R
Sbjct: 178 GAAHSQQFEVECTVPKLEVRVFGTGASRR 206


>gi|113868517|ref|YP_727006.1| ribonuclease III [Ralstonia eutropha H16]
 gi|123133802|sp|Q0K8N3|RNC_RALEH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|113527293|emb|CAJ93638.1| dsRNA-specific ribonuclease [Ralstonia eutropha H16]
          Length = 256

 Score =  110 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 6/209 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S S    +  ERLEFLGD +L   ++ +L+  F
Sbjct: 1   MNLDALQQRLGYRFSKPELLQQALTHRSHS---AQHNERLEFLGDSVLNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L+  +R+     K       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLSDTLRLGEGELKSGGFRRPSILADALEAIV 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   + K +     +       +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDAGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKR 209
           G  H  +F V   +  L     G   S+R
Sbjct: 178 GAAHSQQFEVECTVPKLEVRVFGTGASRR 206


>gi|317506412|ref|ZP_07964217.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974]
 gi|316255292|gb|EFV14557.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974]
          Length = 347

 Score =  110 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 7/216 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + L   IG      SLL  ALTH S ++ + E  + ERLEFLGD +LGL+I+  L+    
Sbjct: 114 AELFDSIGVTLQ-ESLLTLALTHRSWANEHGEVPTNERLEFLGDTVLGLVITEQLYVTHP 172

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVES 121
             +EGEL+    ++VS  + +++AR L    L  ++ + +   +       SI AD +E+
Sbjct: 173 DKEEGELAKLRANIVSTISLAEIARRLGKGGLGEYLYLGNGEMRTGGKNKDSILADGLEA 232

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV-TPEYKVTFR 180
           L+ A+++  GIE A   V         ++ +       +             P       
Sbjct: 233 LLGAVHIQYGIEKAREVVLHLCAPLLARAARLGAGLDWKTSLQELCARRGLRPPVYEVAE 292

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           +GPDH+  FT VV I   +   G   +K+ AE  AA
Sbjct: 293 AGPDHEKLFTAVVLIEEKSLGTGSGRTKKEAEMKAA 328


>gi|257457873|ref|ZP_05623032.1| ribonuclease III [Treponema vincentii ATCC 35580]
 gi|257444586|gb|EEV19670.1| ribonuclease III [Treponema vincentii ATCC 35580]
          Length = 245

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 102/201 (50%), Gaps = 6/201 (2%)

Query: 16  AFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            F N SLL+ A  H S S+ + +   + ERLEFLGD +LG++++  L+       EG+L+
Sbjct: 26  KFKNISLLDIAFHHRSFSNEHSDFPINNERLEFLGDSVLGMIVAAELYLAHPEKPEGDLA 85

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
               ++VS ++   +A  L++  ++ +             ++ AD +E+LI ALYLD G 
Sbjct: 86  KIKAAVVSEDSLFPIALNLNIDKYLMLGHGEEVSGGRKKKALLADALEALIGALYLDSGF 145

Query: 133 EVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           +V   FV K  + +     ++    RD K+ LQE+   K+ + P+Y +    GPDHD  F
Sbjct: 146 KVVQRFVLKIIEPQMQLVEQNKHRYRDYKSLLQEYVQKKYRIIPKYLLVETHGPDHDRVF 205

Query: 190 TVVVEISGLAPAQGMDCSKRA 210
            V V I        +  SK+ 
Sbjct: 206 QVKVVIKDKEYEPALGKSKKE 226


>gi|254415469|ref|ZP_05029229.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420]
 gi|196177650|gb|EDX72654.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420]
          Length = 239

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 11/206 (5%)

Query: 16  AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
              N +L   ALTH S  + +    E  ERLEFLGD +LG ++  LL+  +    E  L+
Sbjct: 18  TIKNETLRLSALTHRSYVNEHPKAGEHNERLEFLGDAVLGFVVGELLYKRYPDVSEAHLT 77

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
               +LV  +  ++ A +L +   +R+     K+      ++ +D +E+ +AA Y++ GI
Sbjct: 78  RLRANLVDEKQLAKFASQLGIGDLMRLGKGADKEGGRQNPALLSDTLEAYMAAYYIESGI 137

Query: 133 EVAGTFVDKYW--------KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +    F+   +         Q++    K   D K   Q+WA A F   P Y +   SG D
Sbjct: 138 DAVRQFIYPLFSRVADSIAVQQSDTEPKNLVDPKGRFQQWALANFVENPTYSIIDESGLD 197

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRA 210
           H   FT  V + G     G    K+ 
Sbjct: 198 HAKEFTAEVRVKGKVYGVGTGRRKQD 223


>gi|320533365|ref|ZP_08034057.1| ribonuclease III [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134435|gb|EFW26691.1| ribonuclease III [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 264

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 3/194 (1%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL+ ALTH S +H      + ERLEFLGD +LG++++  L+       EG+L+    
Sbjct: 26  DTQLLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHSEVPEGQLAKMRA 85

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + VS    + VAR+L L  FI++             SI +D VE+LI A YL  G+E   
Sbjct: 86  ATVSEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETR 145

Query: 137 TFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           T V +   +    +             +   A   +         +GPDH   FT    +
Sbjct: 146 TVVTRLVSRFLDSARTRGAGLDWKTSLQELAAVHQLGNPVYEVAGTGPDHQRVFTASAIV 205

Query: 196 SGLAPAQGMDCSKR 209
            G    QG   SK+
Sbjct: 206 DGEVLGQGTGSSKK 219


>gi|241763850|ref|ZP_04761895.1| Ribonuclease III [Acidovorax delafieldii 2AN]
 gi|241366894|gb|EER61308.1| Ribonuclease III [Acidovorax delafieldii 2AN]
          Length = 227

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 110/211 (52%), Gaps = 6/211 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            S L+ R+ + F+N SLL++A+TH S S    +  ERLEFLGD +L L +++LL+     
Sbjct: 5   LSALQDRLQHHFSNASLLQRAITHRSFS---ADHNERLEFLGDSVLNLAVASLLYQRLSD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    +LV  +T  Q+A  L ++  +R+     K       SI AD +E+LI A
Sbjct: 62  LPEGDLSRVRANLVKQDTLHQLALRLQVSDVLRLGEGESKSGGQNRPSILADALEALIGA 121

Query: 126 LYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G   A   V + ++  +   +     +D KT LQEW   +    P Y V    G 
Sbjct: 122 VYLDAGYSRAEALVHRLFQGVEINPQMQAAAKDPKTALQEWLQGRKMKLPHYSVVATVGA 181

Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
            H   F V  EI+ L  A+ G+  S+RA EQ
Sbjct: 182 AHRQTFDVECEIAELGLAERGIGGSRRAGEQ 212


>gi|17227776|ref|NP_484324.1| ribonuclease III [Nostoc sp. PCC 7120]
 gi|22654062|sp|Q8Z023|RNC_ANASP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|17135258|dbj|BAB77804.1| ribonuclease III [Nostoc sp. PCC 7120]
          Length = 228

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 84/202 (41%), Gaps = 8/202 (3%)

Query: 17  FANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F +  LL +ALTH S  +      E  ERLEFLGD IL  L    L+       E EL+ 
Sbjct: 7   FRDDKLLRRALTHRSYVNENPEEGEHNERLEFLGDAILNFLSGEYLYRSHPDRGEDELTR 66

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           R ++LV  +  ++ A E+ L   +R+     +D      ++ +   E++I A YLD    
Sbjct: 67  RRSALVDEKQLAKFAIEVGLDFKMRLGKGAIRDGGYQNPNLLSSTFEAVIGAYYLDNNSN 126

Query: 134 VA----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPR 188
           +                 +   +   D+K   QEW     G TP   +T + G   H P 
Sbjct: 127 IEAVRAIIEPLFESVPEQIVVVRSNVDSKNRFQEWVQRNIGPTPPKYLTEQIGGFSHAPE 186

Query: 189 FTVVVEISGLAPAQGMDCSKRA 210
           F   V +      +G+  +K+ 
Sbjct: 187 FKATVLVGEKEYGEGIGKNKKD 208


>gi|149913470|ref|ZP_01902003.1| 4'-phosphopantetheinyl transferase [Roseobacter sp. AzwK-3b]
 gi|149812590|gb|EDM72419.1| 4'-phosphopantetheinyl transferase [Roseobacter sp. AzwK-3b]
          Length = 227

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 79/209 (37%), Positives = 117/209 (55%), Gaps = 1/209 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +      E+R+G+ F   +LL +A+THSS++   ++  +RLEFLGDR+LGL+++  L
Sbjct: 1   MKLSAELKAFEERLGHRFEQSALLVRAVTHSSMASPTRDDNQRLEFLGDRVLGLVMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                SA+EG L+ RFN+LV  E C+ VARE+ L   +++             ++  D +
Sbjct: 61  LERDRSAEEGLLAPRFNALVRKEACADVAREIALGDVLKLGRSEMLSGGRRKQALLGDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+Y D G +VA   V + W +R     +  RDAKT LQEWA A+    P Y  T 
Sbjct: 121 EAVIAAVYRDAGFDVAKAVVLRLWGKRIDSVKEDARDAKTALQEWAQARGQTPPAYVETA 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           RSGPDH P+FT+   +           SK
Sbjct: 181 RSGPDHAPQFTIEARLQNGEVETASAGSK 209


>gi|281358070|ref|ZP_06244554.1| ribonuclease III [Victivallis vadensis ATCC BAA-548]
 gi|281315443|gb|EFA99472.1| ribonuclease III [Victivallis vadensis ATCC BAA-548]
          Length = 232

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 5/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
               L+KR+G+A    + L +A+TH S +         +RLEFLGD +L ++++  LF+ 
Sbjct: 4   NIEELKKRLGFAGPWSNRLAEAVTHRSYAVENNLGYDNQRLEFLGDAVLEIILTEYLFHL 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  A EGE++   ++LV     +++AR  +L  ++           +   S  AD+ E++
Sbjct: 64  YPDAAEGEMTKIRSALVREPALARLARRFELGEYLLTGRGEHDSGGADRDSTLADLFEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A YLD G +    FV    +             + K +LQE++   +G+TP+Y +   
Sbjct: 124 LGAFYLDAGFDATRQFVTGLIRDEYPDPRSLLTSINPKGQLQEYSQRHWGLTPKYSILHT 183

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP+H P + V V +S    A G   +++AAE  AA ++ +  
Sbjct: 184 SGPEHLPVYEVEVRLS-RYNAVGRAANRKAAEGDAARQLYRYL 225


>gi|306823678|ref|ZP_07457053.1| ribonuclease III [Bifidobacterium dentium ATCC 27679]
 gi|309802879|ref|ZP_07696980.1| ribonuclease III [Bifidobacterium dentium JCVIHMP022]
 gi|304553385|gb|EFM41297.1| ribonuclease III [Bifidobacterium dentium ATCC 27679]
 gi|308220346|gb|EFO76657.1| ribonuclease III [Bifidobacterium dentium JCVIHMP022]
          Length = 294

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 93/210 (44%), Gaps = 6/210 (2%)

Query: 20  RSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             LL +ALTH S SH +   ++YERLEFLGD +L L+ +  L+       EG+L+     
Sbjct: 81  PELLVEALTHRSFSHEHPGAKNYERLEFLGDAVLELVSTETLYAAHPDMTEGQLAKMRAK 140

Query: 78  LVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            VS E+ S +AR +L +  +I + +   +   +  +SI  D+VESLI A ++  GI+ A 
Sbjct: 141 AVSEESLSHIAREKLHVGPYILLGNGEAEQHGAEKSSILCDIVESLIGATFIQHGIDEAR 200

Query: 137 TFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
             V        A  + +                 G+   Y     SGP++   FT    +
Sbjct: 201 KVVHHLVDDTLAEVATEGPALDWKTSLTVKAHDMGLGEPYYRMSVSGPEYAQVFTAKAML 260

Query: 196 SG--LAPAQGMDCSKRAAEQVAAAEVLKRE 223
            G       G   SKR A+  AA    K  
Sbjct: 261 EGSDEVIGIGKGSSKRKAQLAAAEAGWKAL 290


>gi|283455260|ref|YP_003359824.1| ribonuclease III [Bifidobacterium dentium Bd1]
 gi|283101894|gb|ADB09000.1| rncS Ribonuclease III [Bifidobacterium dentium Bd1]
          Length = 294

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 93/210 (44%), Gaps = 6/210 (2%)

Query: 20  RSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             LL +ALTH S SH +   ++YERLEFLGD +L L+ +  L+       EG+L+     
Sbjct: 81  PELLVEALTHRSFSHEHPGAKNYERLEFLGDAVLELVSTETLYAAHPDMTEGQLAKMRAK 140

Query: 78  LVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            VS E+ S +AR +L +  +I + +   +   +  +SI  D+VESLI A ++  GI+ A 
Sbjct: 141 AVSEESLSHIAREKLHVGPYILLGNGEAEQHGAEKSSILCDIVESLIGATFIQHGIDEAR 200

Query: 137 TFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
             V        A  + +                 G+   Y     SGP++   FT    +
Sbjct: 201 KVVHHLVDDTLAEVATEGPALDWKTSLTVKAHDMGLGEPYYRMSVSGPEYAQVFTAKAML 260

Query: 196 SG--LAPAQGMDCSKRAAEQVAAAEVLKRE 223
            G       G   SKR A+  AA    K  
Sbjct: 261 EGSDEVIGIGKGSSKRKAQLAAAEAGWKAL 290


>gi|171741390|ref|ZP_02917197.1| hypothetical protein BIFDEN_00473 [Bifidobacterium dentium ATCC
           27678]
 gi|171277004|gb|EDT44665.1| hypothetical protein BIFDEN_00473 [Bifidobacterium dentium ATCC
           27678]
          Length = 229

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 93/210 (44%), Gaps = 6/210 (2%)

Query: 20  RSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             LL +ALTH S SH +   ++YERLEFLGD +L L+ +  L+       EG+L+     
Sbjct: 16  PELLVEALTHRSFSHEHPGAKNYERLEFLGDAVLELVSTETLYAAHPDMTEGQLAKMRAK 75

Query: 78  LVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            VS E+ S +AR +L +  +I + +   +   +  +SI  D+VESLI A ++  GI+ A 
Sbjct: 76  AVSEESLSHIAREKLHVGPYILLGNGEAEQHGAEKSSILCDIVESLIGATFIQHGIDEAR 135

Query: 137 TFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
             V        A  + +                 G+   Y     SGP++   FT    +
Sbjct: 136 KVVHHLVDDTLAEVATEGPALDWKTSLTVKAHDMGLGEPYYRMSVSGPEYAQVFTAKAML 195

Query: 196 SG--LAPAQGMDCSKRAAEQVAAAEVLKRE 223
            G       G   SKR A+  AA    K  
Sbjct: 196 EGSDEVIGIGKGSSKRKAQLAAAEAGWKAL 225


>gi|225453660|ref|XP_002268369.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1971

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 83/236 (35%), Gaps = 18/236 (7%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            ++ + TLE  +   F NR LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF  
Sbjct: 1629 SVNFDTLEGALNIKFNNRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFT 1688

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD----- 117
            +     G L+    + V+ E  ++VA +  L   +R  S   +           D     
Sbjct: 1689 YTDLPPGRLTDLRAAAVNNENFARVAVKHKLHIHLRHGSSALEKQIRDFVKEVQDELSKP 1748

Query: 118  --------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
                      ++      +   I  A             K  +         +       
Sbjct: 1749 GFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHPV 1808

Query: 170  GVTPEYKVTFRSGPDHDPRF-----TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                E       G ++         TV V I G+      +  K+ A+++AA   L
Sbjct: 1809 RELQERCQQQAEGLEYKATRSGNLATVEVFIDGVQIGIAQNPQKKMAQKLAARNAL 1864



 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 1413 QLKDVINYPVPAAKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1469

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1470 EGQLTRMRQQMVSNMVLYQSALCKGLQSYIQ 1500



 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 158  KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAA 211
            +  L +    +    P Y+     GP H  RFT  V ++        + +     S + A
Sbjct: 1895 RQTLNDICLRRNWPMPVYRCVNEGGPAHAKRFTFAVRVNTNDKGWTDECIGEPMPSVKKA 1954

Query: 212  EQVAAAEVLKREGIW 226
            +  AA  +L+    W
Sbjct: 1955 KDSAAVLLLELLNKW 1969


>gi|256419408|ref|YP_003120061.1| ribonuclease III [Chitinophaga pinensis DSM 2588]
 gi|256034316|gb|ACU57860.1| ribonuclease III [Chitinophaga pinensis DSM 2588]
          Length = 253

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 88/220 (40%), Gaps = 1/220 (0%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y  L   +G+A  N SL E AL+H S    + ES ERLE+LGD ILG +I   LF  +  
Sbjct: 32  YKDLYNLLGFAPGNFSLYEVALSHRSSKEKFLESNERLEYLGDAILGAIIGDYLFKKYPY 91

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG L+   + +V+ +  + +A ++ L               S +     + +   +  
Sbjct: 92  KTEGYLTEMRSKIVNRQQLNDIAIKMGLRKLTIYDKYNSFLKISQIFGNTLEALVGAVYL 151

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
                  +               +      + K +L  WA+   G T E+ +      + 
Sbjct: 152 DKGYNRTKQFVHQRLIVPYIDLEQLENVEMNHKNKLYGWANK-HGKTLEFDLLEEQMDNG 210

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              FTV   + G     G   +K+ A Q+AA + ++  G+
Sbjct: 211 RRIFTVGAVVDGELICSGKAFNKKDASQIAAQQAIELLGL 250


>gi|168010516|ref|XP_001757950.1| dsRNA-specific nuclease dicer and related ribonuclease
            [Physcomitrella patens subsp. patens]
 gi|162690827|gb|EDQ77192.1| dsRNA-specific nuclease dicer and related ribonuclease
            [Physcomitrella patens subsp. patens]
          Length = 1662

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 28/243 (11%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M ++ + +LE  IG+ F  RSLL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1316 MLSIDFDSLEASIGHKFRKRSLLVEAITHASRPSSGVPCYQRLEFVGDAVLDYLITRFLF 1375

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111
              +     G L+    + V+ E  ++VA +      +R  S   +               
Sbjct: 1376 FKYTDLPPGRLTDLRAAAVNNENFARVAVKHSFHLHLRHGSSALETQIRNFVNDIQTELD 1435

Query: 112  --------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
                            +  D++ES+  AL+LD  +E     V K ++             
Sbjct: 1436 KPGVNSFGLGDFKAPKVLGDILESIAGALFLDACLETDH--VWKVFEPLLQPMVTPETLP 1493

Query: 158  KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
               ++E            +       +     TV V + G+      +  K+ A+++AA 
Sbjct: 1494 MHPVRELQERCQQQAEALEYKASRAGNVA---TVEVYVDGVQIGSAQNAQKKMAQKLAAR 1550

Query: 218  EVL 220
              L
Sbjct: 1551 NAL 1553



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+ +I Y  A   +L +ALT +S   ++  SYER E LGD  L  ++S  LF  +    
Sbjct: 1095 QLKHQIDYPIAASKVL-EALTAASCQETF--SYERAELLGDAYLKWVVSRRLFLKYPCKH 1151

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A +  L S+I+
Sbjct: 1152 EGQLTRMRQQIVSNSVLYQYALDKGLQSYIQ 1182


>gi|154486628|ref|ZP_02028035.1| hypothetical protein BIFADO_00445 [Bifidobacterium adolescentis
           L2-32]
 gi|154084491|gb|EDN83536.1| hypothetical protein BIFADO_00445 [Bifidobacterium adolescentis
           L2-32]
          Length = 298

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 7/221 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L + +G       LL +ALTH S SH ++  ++YERLEFLGD +L L+ +  L+      
Sbjct: 42  LLEALGTTIE-PDLLVEALTHRSFSHEHEGAKNYERLEFLGDAVLELVSTETLYKVHPDM 100

Query: 67  KEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            EG+L+      VS E+ S++AR +L +  +I +     +   +  +SI  D+VESLI A
Sbjct: 101 NEGQLAKMRAKAVSEESLSKIAREKLHVGPYILLGHGEAEQGGADKSSILCDIVESLIGA 160

Query: 126 LYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            ++  GI+ A   V        A  + +               + G+   +  T  +GP+
Sbjct: 161 TFIQHGIDEARRVVHHLVDDTLAEVATEGPALDWKTSLTVKAHEMGLPDPHYQTSVAGPE 220

Query: 185 HDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   FT    +   G     G   SKR A+  AA    K  
Sbjct: 221 YALEFTARAILGDGGEVIGVGTGSSKRKAQLAAAEMGWKAL 261


>gi|119025240|ref|YP_909085.1| ribonuclease III [Bifidobacterium adolescentis ATCC 15703]
 gi|118764824|dbj|BAF39003.1| ribonuclease III [Bifidobacterium adolescentis ATCC 15703]
          Length = 262

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 7/221 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L + +G       LL +ALTH S SH ++  ++YERLEFLGD +L L+ +  L+      
Sbjct: 6   LLEALGTTIE-PDLLVEALTHRSFSHEHEGAKNYERLEFLGDAVLELVSTETLYKVHPDM 64

Query: 67  KEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            EG+L+      VS E+ S++AR +L +  +I +     +   +  +SI  D+VESLI A
Sbjct: 65  NEGQLAKMRAKAVSEESLSKIAREKLHVGPYILLGHGEAEQGGADKSSILCDIVESLIGA 124

Query: 126 LYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            ++  GI+ A   V        A  + +               + G+   +  T  +GP+
Sbjct: 125 TFIQHGIDEARRVVHHLVDDTLAEVATEGPALDWKTSLTVKAHEMGLPDPHYQTSVAGPE 184

Query: 185 HDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   FT    +   G     G   SKR A+  AA    K  
Sbjct: 185 YALEFTARAILGDGGEVIGVGTGSSKRKAQLAAAEMGWKAL 225


>gi|296393287|ref|YP_003658171.1| ribonuclease III [Segniliparus rotundus DSM 44985]
 gi|296180434|gb|ADG97340.1| ribonuclease III [Segniliparus rotundus DSM 44985]
          Length = 338

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 69/217 (31%), Positives = 110/217 (50%), Gaps = 9/217 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
             L + +G    + SL+  ALTH S ++ + E  + ERLEFLGD +LGL+++  L+    
Sbjct: 105 EELFESLGVTLQD-SLMTLALTHRSWANEHGEVPTNERLEFLGDTVLGLVVTEQLYVTHP 163

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVES 121
             +EGEL+    ++VS  + +++AR L    L  ++ + +   +       SI AD +E+
Sbjct: 164 DKEEGELAKLRANIVSTASLAEIARRLGKGGLGEYLYLGNGEVRTGGKNKDSILADGLEA 223

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A+++  GIE A   V         ++ +     D KT LQE    +    P Y+VT 
Sbjct: 224 VIGAVHIQYGIEKAREVVLALCAPLLARAARLGAGLDWKTSLQELCARRGLRPPVYEVTE 283

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             GPDH+  FT VV I   +   G   +K+ AE  AA
Sbjct: 284 A-GPDHEKLFTAVVLIEEKSLGTGSGRTKKEAEMKAA 319


>gi|120609884|ref|YP_969562.1| ribonuclease III [Acidovorax citrulli AAC00-1]
 gi|120588348|gb|ABM31788.1| RNAse III [Acidovorax citrulli AAC00-1]
          Length = 228

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 75/216 (34%), Positives = 107/216 (49%), Gaps = 6/216 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M +   S L+ R+ + F++ SLL++A TH S S    +  ERLEFLGD +L L +S+LL+
Sbjct: 1   MVSPSLSALQDRLQHVFSDPSLLQRATTHRSFS---ADHNERLEFLGDSVLNLAVSSLLY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+LS    +LV  E    +A  L L   +R+     K       SI AD +E
Sbjct: 58  QRLRDLPEGDLSRVRANLVRQEALHSLALGLQLPQVLRLGEGETKSGGKQRPSILADALE 117

Query: 121 SLIAALYLDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD G + A   V       +   +     +DAKT LQEW   +    P+Y+V 
Sbjct: 118 ALIGAVYLDAGYQCAEALVHRLYQDVEINPRMPAAEKDAKTALQEWLQGRKMKLPQYRVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
              G  H   F V  +I  L   + G+  S+RA EQ
Sbjct: 178 ATVGAAHRQTFDVECDIPELGLTERGIGGSRRAGEQ 213


>gi|295690019|ref|YP_003593712.1| ribonuclease III [Caulobacter segnis ATCC 21756]
 gi|295431922|gb|ADG11094.1| ribonuclease III [Caulobacter segnis ATCC 21756]
          Length = 231

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 123/204 (60%), Gaps = 3/204 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65
            LE+RIG+ F +R LLE+ALTH+S+    ++    E LEF+GDR+LGLL +  L   F  
Sbjct: 10  DLERRIGHQFEDRELLERALTHASVGDGAKKVRDNEVLEFIGDRVLGLLAAEALAQRFPK 69

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           AKEGEL+ R N+LVS ETC++VAR  +L   +R+S+   K       SI A   E+L+AA
Sbjct: 70  AKEGELAPRLNALVSRETCARVARVAELGPALRLSASSSKIGGRETESILAGATEALMAA 129

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LY DGG++ A       W     ++G+   RD KT LQEWA  K    P Y+V  R+GPD
Sbjct: 130 LYQDGGLDAARRVFLSLWADEFDRAGEGRPRDPKTALQEWAQGKGRPLPTYRVLDRTGPD 189

Query: 185 HDPRFTVVVEISGLAPAQGMDCSK 208
           H P FTV V ++G+ PA     S+
Sbjct: 190 HAPVFTVEVVVAGVDPAMAKGKSR 213


>gi|156359582|ref|XP_001624846.1| predicted protein [Nematostella vectensis]
 gi|156211649|gb|EDO32746.1| predicted protein [Nematostella vectensis]
          Length = 917

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 101/226 (44%), Gaps = 15/226 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
           +    E+  G  F +  LL +A TH  +  +       +RLEFLGD +L  ++S  L+ H
Sbjct: 677 KLVEFEEGSGIPFTHIRLLARAFTHPQVGKNNLTLGDNQRLEFLGDSVLQFVVSVFLYQH 736

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV++ + +++AR+L+L  FI           +    + ADV+E+L
Sbjct: 737 FPDHHEGHLTLLRSSLVNSRSQAEIARQLNLQEFINTGPT------NVREKMLADVLEAL 790

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ-------RALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           IAA+++D G+     F    +                  +  +  L      K    P Y
Sbjct: 791 IAAVFVDKGLRHVEVFCRVCFFSRLEDSIVNQEWIDSKSQLQQCCLAMRTEGKSPDLPIY 850

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           ++   +GP H  ++ V V   G    +G   S   AE  AA + L+
Sbjct: 851 RILQDAGPAHHKKYQVGVYFQGTRCGKGEGSSIHQAEMAAAKDALE 896



 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 80/216 (37%), Gaps = 55/216 (25%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYER--------------------- 42
             TL+ ++GY F +R LL+ AL+H S   ++     + R                     
Sbjct: 447 LRTLDAKLGYTFKDRMLLQLALSHPSYHLNYGMNPDHARNSLSNCGVKQPRYGDRRIHNV 506

Query: 43  --------------------------------LEFLGDRILGLLISTLLFNHFDSAKEGE 70
                                           LEFLGD +L L+ S  LF       EG 
Sbjct: 507 HSKKKGITHLVRVMANLGKVEEDRSMIRHNERLEFLGDAVLELICSKHLFFMLPDMDEGH 566

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+   ++LV     + +A+ LDL+ +++ S          +    A+ +E+L+ A+YL+ 
Sbjct: 567 LATFRSALVQNRHLALLAKMLDLSDYMQFSHGPDLCQEDDLNHAMANCLEALLGAVYLEA 626

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
           G++VA     +          K+    K  LQ+   
Sbjct: 627 GLQVATELFSRLAFTEQDLYDKWMELPKHRLQDQEP 662


>gi|260432756|ref|ZP_05786727.1| ribonuclease III [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416584|gb|EEX09843.1| ribonuclease III [Silicibacter lacuscaerulensis ITI-1157]
          Length = 226

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 84/210 (40%), Positives = 120/210 (57%), Gaps = 3/210 (1%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +      +KR+G+ FAN  LL +ALTH S+S + +   +RLEFLGDR+LGL++++ L
Sbjct: 1   MKLSADMKAFQKRLGHQFANPELLVRALTHGSVSSATRPDNQRLEFLGDRVLGLVMASAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-SFMTSIQADV 118
                +A EG+L+ RFN+LV  ETC+ VAR++DL + +++              ++  D 
Sbjct: 61  LEADKTATEGQLAPRFNALVRKETCADVARQIDLGAVLKLGRS-EMMSGGRRKQALLGDA 119

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +E++IAA+Y D G E A   V K W  R  +     RDAKT LQEWA A+    P Y   
Sbjct: 120 MEAVIAAVYRDAGFEAARDVVLKLWGDRLHQVKADARDAKTALQEWAQARGQKPPSYVEL 179

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            R+GPDH P FT+V  +     AQ    SK
Sbjct: 180 SRTGPDHAPVFTIVARLESGPEAQATAPSK 209


>gi|326773636|ref|ZP_08232919.1| ribonuclease III [Actinomyces viscosus C505]
 gi|326636866|gb|EGE37769.1| ribonuclease III [Actinomyces viscosus C505]
          Length = 264

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 3/194 (1%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL+ ALTH S +H      + ERLEFLGD +LG++++  L+       EG+L+    
Sbjct: 26  DAHLLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHPEVPEGQLAKMRA 85

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + VS    + VAR+L L  FI++             SI +D VE+LI A YL  G+E   
Sbjct: 86  ATVSEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETR 145

Query: 137 TFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           T V +   +    +             +   A   +         +GPDH   FT    +
Sbjct: 146 TVVTRLVSRFLDSARTRGAGLDWKTSLQELTAVHQLGNPAYEVTGTGPDHQRVFTASAIV 205

Query: 196 SGLAPAQGMDCSKR 209
            G    QG   SK+
Sbjct: 206 DGEVLGQGTGSSKK 219


>gi|333029521|ref|ZP_08457582.1| Ribonuclease 3 [Bacteroides coprosuis DSM 18011]
 gi|332740118|gb|EGJ70600.1| Ribonuclease 3 [Bacteroides coprosuis DSM 18011]
          Length = 276

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 95/227 (41%), Gaps = 5/227 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
               Y    + +G+   +    ++AL H S +   ++    + ERLEFLGD +L  +++ 
Sbjct: 16  EKKSYLLFYQMLGFVPNDLRYYQQALIHKSSTKVSKDGYYQNNERLEFLGDAVLDAVVAD 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           LLF++FD  KEG L+   + +V  ET +++A E+ L   I  S+           +    
Sbjct: 76  LLFHYFDEKKEGFLTNTRSKIVQRETLNKLAVEIGLDKHIIFSTKSSSHNNYMFGNAFEA 135

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ++ ++                +   +      + +   + K++L EW            +
Sbjct: 136 LIGAIYLDQGYKKCKAFIEQRIIDQFLDLDRLA-QTELNFKSKLIEWGQKNKYKITFELI 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                   +P F   V + G++  +G+  SK+ ++Q A+ + L +  
Sbjct: 195 EEFQDEQSNPVFQTEVLVEGISGGRGVGYSKKESQQNASEKTLDKIN 241


>gi|329947035|ref|ZP_08294447.1| ribonuclease III [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526846|gb|EGF53859.1| ribonuclease III [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 267

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 3/195 (1%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL+ ALTH S +H      + ERLEFLGD +LG++++  L+    +  EG+L+    
Sbjct: 26  DAGLLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHATVPEGQLAKMRA 85

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + VS    + VAR+L L  FI++             SI +D VE+LI A YL  G+E   
Sbjct: 86  ATVSEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETR 145

Query: 137 TFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           T V +   +    +             +   A   +         +GPDH   FT    +
Sbjct: 146 TVVTRLVSRFLDSARTRGAGLDWKTSLQELTAAHQLGNPGYEVSGTGPDHQRVFTASAVV 205

Query: 196 SGLAPAQGMDCSKRA 210
            G    +G   SK+ 
Sbjct: 206 DGQVMGRGTGSSKKI 220


>gi|225010255|ref|ZP_03700727.1| Ribonuclease III [Flavobacteria bacterium MS024-3C]
 gi|225005734|gb|EEG43684.1| Ribonuclease III [Flavobacteria bacterium MS024-3C]
          Length = 256

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 92/213 (43%), Gaps = 6/213 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +G+   N S+ +KA  H S+          +YERLEFLGD +LG +IS  ++N   +A
Sbjct: 36  NILGFKPKNLSIYKKAFIHRSLHLKDPQGNPLNYERLEFLGDAMLGAIISKYIYNEVPAA 95

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+   + +VS E  +++ +EL+L SF+           +   ++   +V ++    
Sbjct: 96  DEGYLTKMRSKIVSREHLNELGKELNLLSFVDSKVHKDHFGDNVHGNVFEALVGAIYLDR 155

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
                       + +     A   GK        ++     K   T  +++   SG D  
Sbjct: 156 GYKYCENFIYLKIIEPHVDLAKLEGKVTSYKSLLIEWCQKEK--KTFNFQIFEDSGNDPI 213

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             F+V + I+    ++G   SK+ AE+ AA   
Sbjct: 214 KHFSVRLAINKKVISKGRGPSKKKAEEQAAKRA 246


>gi|119962673|ref|YP_948196.1| ribonuclease III (RNase III) [Arthrobacter aurescens TC1]
 gi|119949532|gb|ABM08443.1| putative ribonuclease III (RNase III) [Arthrobacter aurescens TC1]
          Length = 236

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 64/212 (30%), Positives = 94/212 (44%), Gaps = 6/212 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           MS+     L KR+G +  +   L  ALTH S ++      + ERLEFLGD ILG  ++  
Sbjct: 1   MSST--EELLKRLGVSI-DTETLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDS 57

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+    S  EGEL+ R +++VS    + + RE+ +  FI +    +        SI AD 
Sbjct: 58  LYRENPSLPEGELAKRRSAVVSTRALAGIGREIGVGEFIYLGQGEKLTDGKNKASILADT 117

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKV 177
           +E+LI A YL   IE A   V +        +G            +   A   +   +  
Sbjct: 118 MEALIGATYLSNDIETARQLVMRLVGPLLKDAGALGAGTDWKTSIQELTASRQLGAIHYA 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              SGPDH   F  V+ I G    +G   SK+
Sbjct: 178 VEGSGPDHARTFEAVLNIGGTPYGRGSGHSKK 209


>gi|145224771|ref|YP_001135449.1| ribonuclease III [Mycobacterium gilvum PYR-GCK]
 gi|315445101|ref|YP_004077980.1| RNAse III [Mycobacterium sp. Spyr1]
 gi|145217257|gb|ABP46661.1| RNAse III [Mycobacterium gilvum PYR-GCK]
 gi|315263404|gb|ADU00146.1| RNAse III [Mycobacterium sp. Spyr1]
          Length = 234

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 99/228 (43%), Gaps = 7/228 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
             +  + L K +G       LL  ALTH S S+      + ERLEFLGD +LGL I+  L
Sbjct: 1   MTVDRALLLKALGIDLP-AELLTIALTHRSYSYENGGVPTNERLEFLGDSVLGLTITEEL 59

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQA 116
           ++      EG+L+    S+V+ +  + V R L    L +++ +         +  +SI A
Sbjct: 60  YHRHPDRSEGDLAKLRASIVNTQALADVGRNLSEHGLGAYLLLGKGEENSGGADKSSILA 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEY 175
           D VESL+ A+YL+ G   A   + + +      +             +   A   +    
Sbjct: 120 DGVESLLGAIYLEHGAVAAREVILRLFSDLLDTAPTLGAGLDWKSSLQELTASLALGAPS 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                +GPDHD  FT VV I+      G+  +K+ AE  AA+      
Sbjct: 180 YHVTSTGPDHDKEFTAVVIIAEREHGTGVGRTKKEAELKAASAAWNAL 227


>gi|256842428|ref|ZP_05547931.1| ribonuclease III [Parabacteroides sp. D13]
 gi|262384660|ref|ZP_06077793.1| ribonuclease III [Bacteroides sp. 2_1_33B]
 gi|256736035|gb|EEU49366.1| ribonuclease III [Parabacteroides sp. D13]
 gi|262293641|gb|EEY81576.1| ribonuclease III [Bacteroides sp. 2_1_33B]
          Length = 280

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L K +G+   N  + E+AL H S S    +    + ERLEFLGD IL   ++ +++ 
Sbjct: 24  YLSLSKILGFYPDNLQIYEQALLHKSSSVETGDGKWLNNERLEFLGDGILDAAVADIVYK 83

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + + +EG L+   + +V  ET ++VA +L L   +  S+ +         +    ++ +
Sbjct: 84  RYPNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYSTKINSHNNHMYGNALEALIGA 143

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +      D   +     + + +    +   K     K+ L EW+           +   +
Sbjct: 144 IYLDQGYDVCYKFIRDVMIEKYIDVDMLVRKEINF-KSNLIEWSQKNKISISFDLIESFT 202

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             D +P F   +++ G     G+  SK+ ++Q A+   +KR 
Sbjct: 203 DHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKRL 244


>gi|150009420|ref|YP_001304163.1| ribonuclease III [Parabacteroides distasonis ATCC 8503]
 gi|298377793|ref|ZP_06987743.1| ribonuclease III [Bacteroides sp. 3_1_19]
 gi|149937844|gb|ABR44541.1| ribonuclease III [Parabacteroides distasonis ATCC 8503]
 gi|298265239|gb|EFI06902.1| ribonuclease III [Bacteroides sp. 3_1_19]
          Length = 280

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L K +G+   N  + E+AL H S S    +    + ERLEFLGD IL   ++ +++ 
Sbjct: 24  YLSLSKILGFYPDNLQIYEQALLHKSSSVETGDGKWLNNERLEFLGDGILDAAVADIVYK 83

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + + +EG L+   + +V  ET ++VA +L L   +  S+ +         +    ++ +
Sbjct: 84  RYPNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYSTKINSHNNHMYGNALEALIGA 143

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +      D   +     + + +    +   K     K+ L EW+           +   +
Sbjct: 144 IYLDQGYDVCYKFIRDVMIEKYIDVDMLVRKEINF-KSNLIEWSQKNKISISFDLIESFT 202

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             D +P F   +++ G     G+  SK+ ++Q A+   +KR 
Sbjct: 203 DHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKRL 244


>gi|326798772|ref|YP_004316591.1| ribonuclease 3 [Sphingobacterium sp. 21]
 gi|326549536|gb|ADZ77921.1| Ribonuclease 3 [Sphingobacterium sp. 21]
          Length = 243

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 99/226 (43%), Gaps = 9/226 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHF 63
            L+  +G+   N  L + A  H S++       + S ERLEFLGD ILG +++ LLF  +
Sbjct: 20  ALKNLLGFIPGNLYLYQMAFRHKSVAVQVKKGTKNSNERLEFLGDAILGAVVAELLFKMY 79

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+   + +VS    +Q+AR+L     I+  S +         S+  D  E+LI
Sbjct: 80  PYKDEGFLTEMRSKIVSRVHLNQLARKLGFDELIQYDSKMVGYPGKSS-SLLGDAFEALI 138

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            A+YLD G      F+     +  +      +   + K+ L EW  +             
Sbjct: 139 GAVYLDKGYMFTRNFLLSRIIKPHVDIHLLEQTETNFKSRLIEWCQSTGNEVLFEVANNA 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            G      FTV   ISG     G D +K+ AE++AA +  +  GI 
Sbjct: 199 EGES-AKLFTVEAIISGEVRGTGRDYNKKNAEKLAAEKACEALGII 243


>gi|239814409|ref|YP_002943319.1| ribonuclease III [Variovorax paradoxus S110]
 gi|259646554|sp|C5CSF5|RNC_VARPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|239800986|gb|ACS18053.1| ribonuclease III [Variovorax paradoxus S110]
          Length = 228

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 112/222 (50%), Gaps = 6/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + L++R+ ++F++  LL+ ALTH S S    +  ERLEFLGD +L L +S LL+    +
Sbjct: 5   LTALQERLKHSFSDTRLLQLALTHRSFS---ADHNERLEFLGDSVLNLAVSHLLYTRLSA 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    +LV  +T  ++A EL L+  +R+     +       SI AD +E+LI A
Sbjct: 62  LPEGDLSRVRANLVKQDTLHRLALELQLSPLLRLGEGEARSGGPNRPSILADALEALIGA 121

Query: 126 LYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G   A           +   +     +D KTELQEW        P Y+V    G 
Sbjct: 122 VYLDAGFSAAEALVRRLYESVEINPRMDAVAKDPKTELQEWLQGHKMKLPVYRVAATLGA 181

Query: 184 DHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224
            H   F V  E+  L    +G+  S+RA EQ AAA +L R  
Sbjct: 182 AHKQTFDVECEVPELGLRERGIGGSRRAGEQAAAAAMLIRLK 223


>gi|187477630|ref|YP_785654.1| ribonuclease III [Bordetella avium 197N]
 gi|123514189|sp|Q2KWY0|RNC_BORA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|115422216|emb|CAJ48740.1| ribonuclease III [Bordetella avium 197N]
          Length = 251

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 70/213 (32%), Positives = 108/213 (50%), Gaps = 6/213 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  +TLE R+G+ F +++LLE+ALTH S         ERLEFLGD +L  +++ +LF  +
Sbjct: 1   MSLATLETRLGHHFGDQALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLFERY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV   + + +A+ L+L+ ++R+     K       SI AD VE+L 
Sbjct: 58  AKLDEGDLSRVRANLVKQASLADIAQRLELSPYLRLGEGEMKSGGFRRPSILADAVEALF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   +++ +             +DAKT LQE+   +    P Y V    
Sbjct: 118 GAVFLDAGFDAARKVIEQQYVPVLANVDPETLGKDAKTLLQEFLQGRKLALPLYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213
           G  H  +F V   I  L         S+RAAEQ
Sbjct: 178 GAAHSQQFEVECAIPALEIKVTAAGASRRAAEQ 210


>gi|325068495|ref|ZP_08127168.1| ribonuclease III [Actinomyces oris K20]
          Length = 264

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 3/194 (1%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL+ ALTH S +H      + ERLEFLGD +LG++++  L+       EG+L+    
Sbjct: 26  DAQLLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHPEVPEGQLAKMRA 85

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + VS    + VAR+L L  FI++             SI +D VE+LI A YL  G+E   
Sbjct: 86  ATVSEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETR 145

Query: 137 TFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           T V +   +    +             +   A   +         +GPDH   FT    +
Sbjct: 146 TVVTRLVSRFLDSARTRGAGLDWKTSLQELTAVHQLGNPAYEVTGTGPDHQRVFTASAIV 205

Query: 196 SGLAPAQGMDCSKR 209
            G    QG   SK+
Sbjct: 206 DGEVLGQGTGSSKK 219


>gi|332878384|ref|ZP_08446107.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683649|gb|EGJ56523.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 262

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 3/222 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFN 61
           + Y+ ++  +GYA  N S   +A TH S  +    ++SYERLEFLGD ILG +I+  +F 
Sbjct: 31  IFYNKMKDLLGYAPKNLSFYSEAFTHPSYQYQKATRKSYERLEFLGDAILGAVIADYIFT 90

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     EG L+   + +V     +Q+  EL L SF+R     ++   +   ++   ++ +
Sbjct: 91  NAPEQDEGYLTKMRSKIVERRNLNQLGEELQLLSFLRTKLTPKQLGNNITGNLFEALIGA 150

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +          +     +   +        K     K+ L EW                 
Sbjct: 151 IYLDKGYKTCFKFIERKLILPYINIKNLEEKVISH-KSLLIEWCQKHKRDFSFEAEEDVE 209

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                  F   V + G +  +    SK+ AE+ AA     + 
Sbjct: 210 DRSETKYFVAKVYVEGFSVTRARATSKKRAEESAAKRTCYKI 251


>gi|213963479|ref|ZP_03391733.1| ribonuclease III [Capnocytophaga sputigena Capno]
 gi|213953887|gb|EEB65215.1| ribonuclease III [Capnocytophaga sputigena Capno]
          Length = 252

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 88/222 (39%), Gaps = 3/222 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFN 61
           + Y+ ++  +G+A  N S   +A TH S     + ++SYERLEFLGD ILG +I+  +F 
Sbjct: 21  IFYNKIKNLLGFAPKNLSYYSEAFTHPSYQFQKATRKSYERLEFLGDAILGAVIADYIFT 80

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     EG L+   + +V     +Q+ +++ L  F+R     R+   +   ++   ++ +
Sbjct: 81  NAPEQDEGYLTKMRSKIVERRNLNQLGKDMGLLDFLRTKLTPRQLGNNITGNLFEALIGA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +                +           GK     K+ L EW                 
Sbjct: 141 IYLDRGYKACFRFIERELILPHINIKNLEGKVISH-KSLLIEWCQKHKLDFAFEAEEDME 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                  F   V + G +  +    SK+ AE++AA     + 
Sbjct: 200 DRSETKYFVAKVHVQGFSVTRARSTSKKKAEEIAAKRACYKI 241


>gi|330721516|gb|EGG99556.1| Ribonuclease III [gamma proteobacterium IMCC2047]
          Length = 210

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 104/208 (50%), Gaps = 6/208 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            +   + L + +GY F + SLL+ ALTHSS    +    ERLEFLGD ILG +I+  LF 
Sbjct: 1   MSQDLAKLSQSLGYQFRDESLLQTALTHSSFGQGH---NERLEFLGDSILGWVIADALFK 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS     LV   T ++VAREL L  ++R+     K       SI AD  E+
Sbjct: 58  RFPHAREGQLSRLRAGLVKGVTLAKVARELQLGHYLRLGQGEMKSGGFRRDSILADAFEA 117

Query: 122 LIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A++LD  I      +      +  A       +D KT LQE+  ++    P+Y++  
Sbjct: 118 IIGAIFLDSDIATCQQIILVLFAGRLDAQTLDDTLKDPKTRLQEFLQSRKQPLPDYRILS 177

Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDC 206
            SG DH+  F V  E+  +  P +    
Sbjct: 178 TSGKDHEQVFRVACEVESIAEPFEAEGT 205


>gi|118470776|ref|YP_886758.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
 gi|118172063|gb|ABK72959.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
          Length = 230

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 95/209 (45%), Gaps = 6/209 (2%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL  ALTH S S+      + ERLEFLGD +LGL I+  L++      EG+L+    S+
Sbjct: 19  ELLTIALTHRSYSYENGGLPTNERLEFLGDAVLGLTITEELYHRHPDRAEGDLAKLRASI 78

Query: 79  VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           V+ +  + V R L    L + + +         +  +SI AD VESL+ A+YL+ G+ V 
Sbjct: 79  VNTQALADVGRGLTDEGLGAHLFLGKGEENSGGADKSSILADGVESLLGAIYLEHGLTVV 138

Query: 136 GTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
              + + + +    +             +   A  G+     V   +GPDHD  F+  V 
Sbjct: 139 REVILRLFGELLDTAPTLGAGLDWKSSLQELTAARGLGAPAYVVTSTGPDHDKEFSATVV 198

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           I       G+  +K+ AE  AAA   K  
Sbjct: 199 IGEAEYGHGVGRTKKEAELKAAASAYKTL 227


>gi|170725604|ref|YP_001759630.1| ribonuclease III [Shewanella woodyi ATCC 51908]
 gi|238688672|sp|B1KI57|RNC_SHEWM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|169810951|gb|ACA85535.1| Ribonuclease III [Shewanella woodyi ATCC 51908]
          Length = 225

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 105/213 (49%), Gaps = 6/213 (2%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +     L + +GY F+  +LL+ ALTH S +    +  ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNIPRLCRTLGYDFSELALLDHALTHRSAAS---KHNERLEFLGDSILSIIISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +  +++  E  L  ++++     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVCGKMLAEIGFEFKLGDYLKLGPGELKSGGFRRESIIADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFV-DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E++I A+YLD  +EV  + V   Y  +        ++D KT LQE         P YKVT
Sbjct: 118 EAIIGAVYLDSDLEVTRSLVLGWYKTRLETIQPINQKDPKTLLQELLQGYKKPLPVYKVT 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  H   FT+   +  L  P  G+  S+R 
Sbjct: 178 DIRGEAHAQTFTIECYVEELRKPVVGVASSRRK 210


>gi|325105464|ref|YP_004275118.1| ribonuclease III [Pedobacter saltans DSM 12145]
 gi|324974312|gb|ADY53296.1| ribonuclease III [Pedobacter saltans DSM 12145]
          Length = 242

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 9/227 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61
              L   IG+   N SL   A  H SI+       + S ERLEFLGD +LG +++ +LF 
Sbjct: 18  VKALRNLIGFVPGNLSLYRMAFRHKSIALGIKKGVKNSNERLEFLGDAVLGAVVAEVLFK 77

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG L+   + +VS    +Q+ ++L     I        ++ S  +S+  D  E+
Sbjct: 78  MYPYKDEGFLTEMRSKIVSRANLNQLGKKLGFNKLIEFDPST-VNISSKQSSLLGDAFEA 136

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G      F+        +          + K+ L EW            + 
Sbjct: 137 LVGAVYLDKGYNFTKDFLINRILNPHVDIHTLEVTETNFKSRLIEWCQRLSKEIQFNLIP 196

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            + G D D  FT+ V I G   A G+D +K+ AE++AA +  +  G+
Sbjct: 197 NQEG-DSDKLFTIQVVIDGELMATGVDYNKKNAEKLAAEKTCEMLGV 242


>gi|86131058|ref|ZP_01049657.1| ribonuclease III [Dokdonia donghaensis MED134]
 gi|85818469|gb|EAQ39629.1| ribonuclease III [Dokdonia donghaensis MED134]
          Length = 245

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61
           +  ++  IG+   N ++ EKA TH S+          +YERLEFLGD +LG +I+  LFN
Sbjct: 19  FMRMQSIIGFKPKNLAIYEKAFTHRSLGLKKEDGNPLNYERLEFLGDAMLGSVIAAHLFN 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EG L+   + +VS +  +++ R+L+L  +++ S  +     +   ++   +V +
Sbjct: 79  EVQGGNEGYLTKMRSKVVSRKHLNELGRDLNLVRYVKASIPIDNFGANIHGNLFEALVGA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +          +     V + +       G+        ++     K   T +++    +
Sbjct: 139 IYLDRGYRYCEKFIAKRVIEPYVDIEKLEGRIISYKSVLIEWCQKEKH--TFKFETFEDT 196

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           G D    F V + I G   A+    SK+ AE++A+   
Sbjct: 197 GQDAVKHFGVRLHIDGKIIAKARATSKKKAEEIASKRA 234


>gi|301770225|ref|XP_002920522.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like
            [Ailuropoda melanoleuca]
          Length = 1931

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 93/260 (35%), Gaps = 45/260 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726

Query: 65   SAKEGELSVRFNSLVSAETC--------SQVARELDLASFI------------------- 97
                G L+   ++LV+                   D   +                    
Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVXXXXXXXXXXDYHKYFKAVSPELFHVIDDFVQFQL 1786

Query: 98   -------------RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                         R   D  K+    +     D+ ESL  A+Y+D G+ +   +   Y  
Sbjct: 1787 EKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPM 1846

Query: 145  QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
             R L         ++ ++E    +                +D +  V VE+ G    +G+
Sbjct: 1847 MRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERT----YDGKVRVTVEVVGKGKFKGV 1902

Query: 205  DCSKRAAEQVAAAEVLKREG 224
              S R A+  AA   L+   
Sbjct: 1903 GRSYRIAKSAAARRALRSLK 1922



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 54/185 (29%), Gaps = 16/185 (8%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351

Query: 79   VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
            VS     ++ ++  L                            +          E     
Sbjct: 1352 VSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSNTDKWEKDEMT 1404

Query: 139  VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
             D       L       D + E   W   K     E         +H         I  +
Sbjct: 1405 KDCMLANGKLDEDFEEDDEEEEELTWRAPKEDADYEDDFLEYD-QEHIK------FIDNM 1457

Query: 199  APAQG 203
                G
Sbjct: 1458 LMGSG 1462


>gi|157120736|ref|XP_001659747.1| dicer-1 [Aedes aegypti]
 gi|108883036|gb|EAT47261.1| dicer-1 [Aedes aegypti]
          Length = 2193

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 88/248 (35%), Gaps = 29/248 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS  E  +GY F +RS L +A+TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1937 YSAFEDSLGYQFTDRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1996

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A   D   + R  S    DV      IQ D    +  
Sbjct: 1997 QHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHIISE 2056

Query: 125  ALYLDGGIEVA---------------------GTFVDKYWKQRALKSGKFRRDAKTELQE 163
              YL    E                                    K  +     + E   
Sbjct: 2057 EYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMSLDAVWKVYRSMMGPEIEQFS 2116

Query: 164  WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +  K  +         T + G         R  V VE+ G    +G+  + R A+  AA
Sbjct: 2117 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGTFRGIGRNYRIAKCTAA 2176

Query: 217  AEVLKREG 224
               L++  
Sbjct: 2177 KCALRQLK 2184



 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1654 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYENVHEGKLSHLRSKQV 1711

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            S     ++ R   L   +  +     D            +E
Sbjct: 1712 SNLNLYRLGRRKVLGESMIATKFEPHDNWLPPCYYVPKELE 1752


>gi|293604014|ref|ZP_06686427.1| ribonuclease III [Achromobacter piechaudii ATCC 43553]
 gi|292817618|gb|EFF76686.1| ribonuclease III [Achromobacter piechaudii ATCC 43553]
          Length = 253

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 106/213 (49%), Gaps = 6/213 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  +TLE R+ + F + +LLE+ALTH S         ERLEFLGD +L  +++ +LF  +
Sbjct: 1   MSLATLENRLDHHFGDPALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLFERY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV   + + +A+ L+L+ ++R+     K       SI AD VE+L 
Sbjct: 58  SKIDEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   + + ++            +DAKT LQE+   +    P Y V    
Sbjct: 118 GAVFLDAGFDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPLYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213
           G  H  +F V   I  L         S+RAAEQ
Sbjct: 178 GAAHSQQFEVECAIPALEIKVTAPGASRRAAEQ 210


>gi|301312334|ref|ZP_07218251.1| ribonuclease III [Bacteroides sp. 20_3]
 gi|300829756|gb|EFK60409.1| ribonuclease III [Bacteroides sp. 20_3]
          Length = 280

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L K +G+   N  + E+AL H S S    +    + ERLEFLGD IL   ++ +++ 
Sbjct: 24  YLSLSKILGFYPDNLQIYEQALLHKSSSVETDDGKWLNNERLEFLGDGILDAAVADIVYK 83

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + + +EG L+   + +V  ET ++VA +L L   +  S+ +         +    ++ +
Sbjct: 84  RYPNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYSTKINSHNNHMYGNALEALIGA 143

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +      D   +     + + +        K     K+ L EW+           +   +
Sbjct: 144 IYLDQGYDVCYKFIRDVMIEKYIDVDTLVRKEINF-KSNLIEWSQKNKISISFDLIESFT 202

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             D +P F   +++ G     G+  SK+ ++Q A+   +KR 
Sbjct: 203 DHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKRL 244


>gi|2500553|sp|Q53844|RNC_SPICI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|1143009|gb|AAA84999.1| orfb [Spiroplasma citri]
 gi|110005386|emb|CAK99709.1| putative ribonuclease III protein [Spiroplasma citri]
          Length = 248

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFN 61
           +      K+       R    +ALTH+S ++ +  SY  +R+EFLGD IL   IS  LF 
Sbjct: 13  IELKAFFKQYHVFIKERQYYLEALTHNSYANEHNLSYTYQRMEFLGDAILAKEISLYLFL 72

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EGE++   + +V   T +++ R ++ A F+ +     K        I AD+ ES
Sbjct: 73  SFPDKNEGEITNLRSKIVREGTLAELVRRMNWAPFLLLGKGEIKTKGYEKNRILADIYES 132

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +IAALYLD G +V  TF++    +           RD KTELQE+  A    T EYK+  
Sbjct: 133 MIAALYLDLGEDVVRTFINNTLIRMVSNPGFFDKIRDYKTELQEFLQAGDARTLEYKLIK 192

Query: 180 RSGP-DHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            S P + +   +TVV EI G+   +G   + + AEQ+AA + L++ 
Sbjct: 193 ESQPLEGNRVLYTVVAEIGGIRYGEGCGYTHKEAEQLAARDALQKL 238


>gi|294668882|ref|ZP_06733972.1| ribonuclease III [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309179|gb|EFE50422.1| ribonuclease III [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 233

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 65/216 (30%), Positives = 106/216 (49%), Gaps = 6/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +++++ Y F    LL +ALTH S S  +    ER EF+GD IL   I+ +L++ F    E
Sbjct: 4   IQQKLQYRFKQPELLTRALTHRSYSSRH---NERFEFVGDAILNYTIAKMLYDTFLDLPE 60

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS    +LV+ +T +++A EL +   + + +   K       SI +D +E++ AA+  
Sbjct: 61  GRLSRLRANLVNQDTLAEIATELKVGDALLLGNGELKSGGFRRPSILSDAMEAMFAAVSF 120

Query: 129 DGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D     A   V   + +R   +      +DAKT LQE   A+    P+Y++  + G  + 
Sbjct: 121 DTDFNAAEQVVRHLFARRVGSISFDNEGKDAKTMLQEALQARRLALPKYRIEHQEGEGYT 180

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
            RFTV  ++  L         S+RAAEQ  A    +
Sbjct: 181 ARFTVSCDLGELGFITTAEAHSRRAAEQQTAKTAFE 216


>gi|315606951|ref|ZP_07881957.1| ribonuclease III [Prevotella buccae ATCC 33574]
 gi|315251332|gb|EFU31315.1| ribonuclease III [Prevotella buccae ATCC 33574]
          Length = 371

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y++L   IG+   +  L E+AL H S+     +    + ERLEFLGD IL  ++  ++F 
Sbjct: 20  YTSLYDIIGFYPRDIRLYEQALMHKSVMRRNAKGRPVNNERLEFLGDAILDAIVGDIVFK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  +T +++A+E+ ++  I  +            +    +V +
Sbjct: 80  HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGISQLILSNGHNSSHNSYLGGNAFEALVGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           L      D  ++     +          + K     K++L EW            ++   
Sbjct: 140 LYLDRGYDACMKFMQKRILSQMINIDKVAYKEVNF-KSKLIEWGQKNRVKLDFKLLSQGK 198

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             D +P F     I G     G   SK+ ++Q A+   L++  
Sbjct: 199 DKDGNPMFAYQAVIEGCEGGTGKGYSKKESQQTASKLTLEKLK 241


>gi|315225570|ref|ZP_07867380.1| ribonuclease III [Capnocytophaga ochracea F0287]
 gi|314944514|gb|EFS96553.1| ribonuclease III [Capnocytophaga ochracea F0287]
          Length = 252

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 3/224 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLL 59
             + Y+ +++ +G+   N S   +A TH S     + ++SYERLEFLGD ILG +I+  +
Sbjct: 19  DGIFYTKIKELLGFPPKNLSYYSEAFTHPSYQFQKATRKSYERLEFLGDAILGAVIADYI 78

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F +     EG L+   + +V     +Q+ +++ L  F+R     R+   +   ++   ++
Sbjct: 79  FTNAPEQDEGYLTKMRSKIVERRNLNQLGKDMRLLDFLRTKLTPRQLGNNITGNLFEALI 138

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            ++          +     +   +       GK     K+ L EW               
Sbjct: 139 GAIYLDRGYKACFKFIERELILPYINIKNLEGKVISH-KSLLIEWCQKHKLDFAFEAEED 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                    F   V + G +  +    SK+ AE++AA     + 
Sbjct: 198 IEDCSETKFFVAKVHVQGFSVTRARSTSKKKAEEIAAKRACYKI 241


>gi|227875300|ref|ZP_03993442.1| ribonuclease III [Mobiluncus mulieris ATCC 35243]
 gi|227844205|gb|EEJ54372.1| ribonuclease III [Mobiluncus mulieris ATCC 35243]
          Length = 261

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 6/201 (2%)

Query: 20  RSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             LL  A+TH S SH + ++      ERLEFLGD +L ++++  L+ +F    EG L+  
Sbjct: 28  PDLLVLAMTHRSFSHEHGKTGSRGTNERLEFLGDAVLQIIVTEYLYRNFPDEPEGTLAQM 87

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             + VS    ++VAR++ L  ++R+     +       SI +D +E+LI A +L  G+ V
Sbjct: 88  RAATVSQTPLAEVARKIHLGEYLRLGVGEDRQGGRDKDSILSDTLEALIGATFLSCGLSV 147

Query: 135 AGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
               V+++ ++       +          +   +   +         +GPDH   F+   
Sbjct: 148 TRVVVERHLRRFLRNAPRRAVTLDWKTTLQELLSAADLGEVTYEVVATGPDHQKHFSAQA 207

Query: 194 EISGLAPAQGMDCSKRAAEQV 214
            + G    +G   SK+ AE  
Sbjct: 208 LVEGENWGEGQGSSKKIAEHQ 228


>gi|313157061|gb|EFR56491.1| ribonuclease III [Alistipes sp. HGB5]
          Length = 232

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 83/210 (39%), Gaps = 11/210 (5%)

Query: 14  GYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           G+   N  L + AL H S S         + ERLEFLGD ++  + S  LF  +    EG
Sbjct: 3   GFIPNNIELYKLALIHKSASLVLEDGRAINNERLEFLGDAVIEAVTSDYLFIEYPDRDEG 62

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+   + +VS ++ + +A  + L   +  +             I  D  E++I A+YLD
Sbjct: 63  FLTQLRSKIVSRQSLNVLAVNIGLDRHVISNGSTSV----TQKHIYGDAFEAMIGAVYLD 118

Query: 130 GGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
            G E     +      R     +  +   D K+ L EW               +    + 
Sbjct: 119 QGYEFVNRLLINRIYFRHLSLDELTESETDFKSRLIEWCQKNRHKIAFRTGYDKEYSANH 178

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           P F   V + G+    G   SK+ AEQ AA
Sbjct: 179 PVFYSTVLVDGMEVGHGSGDSKKEAEQHAA 208


>gi|157285009|gb|ABV31244.1| dicer-like 1 [Physcomitrella patens]
          Length = 1662

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 28/243 (11%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M ++ + +LE  IG+ F  RSLL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1316 MLSIDFDSLEASIGHKFRKRSLLVEAITHASRPSSGVPGYQRLEFVGDAVLDYLITRFLF 1375

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111
              +     G L+    + V+ E  ++VA +      +R  S   +               
Sbjct: 1376 FKYTDLPPGRLTDLRAAAVNNENFARVAVKHSFHLHLRHGSSALETQIRNFVNDIQTELD 1435

Query: 112  --------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
                            +  D++ES+  AL+LD  +E     V K ++             
Sbjct: 1436 KPGVNSFGLGDFKAPKVLGDILESIAGALFLDACLETDH--VWKVFEPLLQPMVTPETLP 1493

Query: 158  KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
               ++E            +       +     TV V + G+      +  K+ A+++AA 
Sbjct: 1494 MHPVRELQERCQQQAEALEYKASRAGNVA---TVEVYVDGVQIGSAQNAQKKMAQKLAAR 1550

Query: 218  EVL 220
              L
Sbjct: 1551 NAL 1553



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+ +I Y  A   +L +ALT +S   ++  SYER E LGD  L  ++S  LF  +    
Sbjct: 1095 QLKHQIDYPIAASKVL-EALTAASCQETF--SYERAELLGDAYLKWVVSRRLFLKYPCKH 1151

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A +  L S+I+
Sbjct: 1152 EGQLTRMRQQIVSNSVLYQYALDKGLQSYIQ 1182


>gi|308235889|ref|ZP_07666626.1| ribonuclease III [Gardnerella vaginalis ATCC 14018]
          Length = 309

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 9/221 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64
             L + +G   +   LL +ALTH S SH +   ++YERLEFLGD +L L+ +  LF+   
Sbjct: 74  QELLRALGTTIS-PDLLVEALTHRSFSHEHPGTKNYERLEFLGDAVLELVSTETLFSAHP 132

Query: 65  SAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS    S VAR+ L +  +I +     +   +   SI  D+VE+LI
Sbjct: 133 DMTEGQLAKLRAKAVSEWALSAVARDKLHVGPYILLGHGEMEHGGAQKDSILCDIVEALI 192

Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A +++ GI+ A   V +      A    +               + G+         SG
Sbjct: 193 GATFVEHGIDEARAVVHRLIDDTLAEVLTEGPALDWKTSLTVLAHEMGLDEPQYRMSVSG 252

Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEV 219
           PD+ P F     +          +    SKR A+  AA + 
Sbjct: 253 PDYAPVFHARAVLAHESGDELLGEADGSSKRKAQLAAADKA 293


>gi|311115015|ref|YP_003986236.1| ribonuclease III [Gardnerella vaginalis ATCC 14019]
 gi|310946509|gb|ADP39213.1| ribonuclease III [Gardnerella vaginalis ATCC 14019]
          Length = 298

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 9/221 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64
             L + +G   +   LL +ALTH S SH +   ++YERLEFLGD +L L+ +  LF+   
Sbjct: 63  QELLRALGTTIS-PDLLVEALTHRSFSHEHPGTKNYERLEFLGDAVLELVSTETLFSAHP 121

Query: 65  SAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS    S VAR+ L +  +I +     +   +   SI  D+VE+LI
Sbjct: 122 DMTEGQLAKLRAKAVSEWALSAVARDKLHVGPYILLGHGEMEHGGAQKDSILCDIVEALI 181

Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A +++ GI+ A   V +      A    +               + G+         SG
Sbjct: 182 GATFVEHGIDEARAVVHRLIDDTLAEVLTEGPALDWKTSLTVLAHEMGLDEPQYRMSVSG 241

Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEV 219
           PD+ P F     +          +    SKR A+  AA + 
Sbjct: 242 PDYAPVFHARAVLAHESGDELLGEADGSSKRKAQLAAADKA 282


>gi|13357763|ref|NP_078037.1| ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762098|ref|YP_001752286.1| ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171920496|ref|ZP_02931789.1| ribonuclease III [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|171920571|ref|ZP_02931835.1| ribonuclease III [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|185178791|ref|ZP_02964587.1| ribonuclease III [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|186701949|ref|ZP_02971588.1| ribonuclease III [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|188024220|ref|ZP_02996925.1| ribonuclease III [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188524062|ref|ZP_03004155.1| ribonuclease III [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867699|ref|ZP_03079700.1| ribonuclease III [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198273484|ref|ZP_03206020.1| ribonuclease III [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209554634|ref|YP_002284601.1| ribonuclease III [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225550368|ref|ZP_03771317.1| ribonuclease III [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225551297|ref|ZP_03772243.1| ribonuclease III [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|22654077|sp|Q9PQT8|RNC_UREPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|11263399|pir||F82919 ribonuclease III UU205 [imported] - Ureaplasma urealyticum
 gi|6899171|gb|AAF30612.1|AE002120_4 ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827675|gb|ACA32937.1| ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902964|gb|EDT49253.1| ribonuclease III [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|171903275|gb|EDT49564.1| ribonuclease III [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|184209411|gb|EDU06454.1| ribonuclease III [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|186700702|gb|EDU18984.1| ribonuclease III [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|188018874|gb|EDU56914.1| ribonuclease III [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|195659811|gb|EDX53191.1| ribonuclease III [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660554|gb|EDX53810.1| ribonuclease III [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198250004|gb|EDY74784.1| ribonuclease III [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209542135|gb|ACI60364.1| ribonuclease III [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225379112|gb|EEH01477.1| ribonuclease III [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225379522|gb|EEH01884.1| ribonuclease III [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 236

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 101/232 (43%), Gaps = 12/232 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M   ++    K+      N S+  +ALTH S ++ ++  ++Y+RLEFLGD  +  +IS  
Sbjct: 1   MDNKKFLDFLKQNRIEPKNLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNF 60

Query: 59  LFNHFDSAKEGE-------LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
           +FN+     E         ++   +++V +E  S  A++L L  F+ +   L +D  + M
Sbjct: 61  IFNYKIKDNEKMRSLDEGEMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARM 120

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
             I  D+ E+ I A+  D GI+     ++K   +   +     +     + +    +   
Sbjct: 121 EKIYEDIFEAFIGAVAQDQGIKKVSLILEKTLIKYFREGQINYQKDYKTIFQEQAQRINK 180

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            P      R+  D      V +  + L    G+  +++ AE +AA   + + 
Sbjct: 181 KPIMYKLVRNEGDKK---EVHLVWNDLIYGIGIASTRKEAEILAAKNAILKL 229


>gi|307298654|ref|ZP_07578457.1| ribonuclease III [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915819|gb|EFN46203.1| ribonuclease III [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 241

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 112/228 (49%), Gaps = 11/228 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES-------YERLEFLGDRILGLLISTL 58
                +  G   A+R L+ +AL HSS ++   ++        ER+EFLGD +L L ++  
Sbjct: 10  IEKFCRINGIE-ADRELVFRALCHSSFTNELAQNGERTLESNERMEFLGDAVLELSLAKT 68

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+N +    EGE+S     + S +  S VA+ + +  FI +    R+   +   SI AD 
Sbjct: 69  LYNEYYL-TEGEMSKIRAMVGSEKVLSSVAKTMRIGDFIFLGKGERQTGGAERDSILADA 127

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYK 176
            E+++AA++L GG+ V+  FV         ++ +     D KT LQE   A+FG  P Y+
Sbjct: 128 FEAVLAAIFLTGGLGVSVEFVQSKLSDYIERAVEGELILDYKTSLQELTQARFGSRPLYE 187

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                GP  +  F V V + G    +G   +K+AAEQ+AA   L+   
Sbjct: 188 TLLDEGPPQEKWFKVGVFLDGSLMGEGEGRTKKAAEQLAAKHALEILK 235


>gi|325281581|ref|YP_004254123.1| Ribonuclease 3 [Odoribacter splanchnicus DSM 20712]
 gi|324313390|gb|ADY33943.1| Ribonuclease 3 [Odoribacter splanchnicus DSM 20712]
          Length = 246

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 9/216 (4%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +IG+   N+SL   AL H S S    +    +YERLEFLGD +LG +++ LL+  F    
Sbjct: 26  QIGFVPNNKSLYRLALLHKSASKMTSKGVVLNYERLEFLGDAVLGAIVAELLYKFFPKKD 85

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+   + +VS E+ +++A  + L   +   SD+ ++       I  DV E+ I A++
Sbjct: 86  EGFLTRVRSKVVSRESLNELAINIGLDKAVVAKSDISRNK-----HIYGDVFEAFIGAMF 140

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           LD G      F++K+                               +             
Sbjct: 141 LDQGFVNTKRFIEKFIFPNFFDIKDLVTIDTNYKSRLIEWGQKNKVDIHFQTDEVARGRR 200

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F   V +S     +G   SK+ AEQ AA  V+   
Sbjct: 201 KFCCTVMLSEEEKGKGEGTSKKEAEQNAAKIVIDIL 236


>gi|288925905|ref|ZP_06419835.1| ribonuclease III [Prevotella buccae D17]
 gi|288337329|gb|EFC75685.1| ribonuclease III [Prevotella buccae D17]
          Length = 370

 Score =  108 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y++L   IG+   +  L E+AL H S+     +    + ERLEFLGD IL  ++  ++F 
Sbjct: 19  YTSLYDIIGFYPRDIRLYEQALMHKSVMRRNAKGRPVNNERLEFLGDAILDAIVGDIVFK 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  +T +++A+E+ ++  I  +            +    +V +
Sbjct: 79  HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGISQLILSNGHNSSHNSYLGGNAFEALVGA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           L      D  ++     +          + K     K++L EW            ++   
Sbjct: 139 LYLDRGYDACMKFMQKRILSQMINIDKVAYKEVNF-KSKLIEWGQKNRVKLDFKLLSQGK 197

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             D +P F     I G     G   SK+ ++Q A+   L++  
Sbjct: 198 DKDGNPMFAYQAVIEGCEGGTGKGYSKKESQQTASKLTLEKLK 240


>gi|239607869|gb|EEQ84856.1| dicer-like protein [Ajellomyces dermatitidis ER-3]
          Length = 1522

 Score =  108 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 85/251 (33%), Gaps = 34/251 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
              +  R+GY F    LL  A TH+S   ++     Y+RLEFLGD +L ++    L++ + 
Sbjct: 1236 KQIGDRLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYP 1295

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102
                  L+    ++VS +    VA +L L   +   S+                      
Sbjct: 1296 DRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNN 1355

Query: 103  --LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
                    S       D++E+ I A+++D   +            +         D    
Sbjct: 1356 SPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQYFEDMSIYDTFAN 1415

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDH--------DPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 +    +T ++  T               +PR    V +     A+G+  S R A+
Sbjct: 1416 KHPTTYFHNRLTIDFGCTSYCLKAGEVQMVDGTEPRVYAAVIVHDEFVAEGIASSVRYAK 1475

Query: 213  QVAAAEVLKRE 223
              A+   L + 
Sbjct: 1476 IKASEAALAKL 1486



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 13   IGYAFANRSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLF 60
            +        L  +ALT        H            ++YERLEFLGD  L +  S  LF
Sbjct: 1036 LHINIK-THLALEALTKDSDNTEEHRGEQIHFQRGMGKNYERLEFLGDCFLKMATSISLF 1094

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
                   E +  V+   L+  +     A  + L  FIR  
Sbjct: 1095 AMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFIRTQ 1134


>gi|299136236|ref|ZP_07029420.1| ribonuclease III [Acidobacterium sp. MP5ACTX8]
 gi|298602360|gb|EFI58514.1| ribonuclease III [Acidobacterium sp. MP5ACTX8]
          Length = 289

 Score =  108 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 106/256 (41%), Gaps = 39/256 (15%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----------------------SYERL 43
              L++ +G+ F    LL  ALTH S ++  +                         E+L
Sbjct: 16  IDELQRLLGHRFTRPELLALALTHRSHTYEARHGVPTVILPAHPDQRDQRNPPGTDNEQL 75

Query: 44  EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
           EFLGD ILGL+++  L+  F  + EGEL+   + LVS    ++V   L+L   + +    
Sbjct: 76  EFLGDSILGLVVTEALYREFPQSSEGELTRLRSILVSRARMAEVGVALELGEQLFLGKSA 135

Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--------- 154
            ++      ++ A+ VE++IAA+YLD G +          +                   
Sbjct: 136 DQNGGRKKPALLANAVEAIIAAVYLDAGAKGLKAVRAIVERYVLEPDLDTMRAALAGEEG 195

Query: 155 ----RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL----APAQGMDC 206
               RD KT LQE   A       Y  T ++GP H  RF+V  ++ G       A     
Sbjct: 196 RGALRDHKTVLQERVQASGLGRLRYVDTDQTGPAHQRRFSVEAQLEGEAGTRTLAAAEGS 255

Query: 207 SKRAAEQVAAAEVLKR 222
           +K+ A+Q AA   L +
Sbjct: 256 NKKEAQQRAAELALAQ 271


>gi|311104757|ref|YP_003977610.1| ribonuclease III [Achromobacter xylosoxidans A8]
 gi|310759446|gb|ADP14895.1| ribonuclease III [Achromobacter xylosoxidans A8]
          Length = 253

 Score =  108 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 6/213 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  +TLE R+ + F++ +LLE+ALTH S         ERLEFLGD +L  +++ +LF  +
Sbjct: 1   MSLATLENRLDHHFSDPALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLFERY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV   + + +A+ L+L+ ++R+     K       SI AD VE+L 
Sbjct: 58  SKIDEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   + + ++            +DAKT LQE+   +    P Y V    
Sbjct: 118 GAVFLDAGFDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPLYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213
           G  H  +F V   I  L         S+RAAEQ
Sbjct: 178 GAAHSQQFEVECAIPALEIKVMAPGASRRAAEQ 210


>gi|327355811|gb|EGE84668.1| hypothetical protein BDDG_07613 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1509

 Score =  108 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 85/251 (33%), Gaps = 34/251 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
              +  R+GY F    LL  A TH+S   ++     Y+RLEFLGD +L ++    L++ + 
Sbjct: 1223 KQIGDRLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYP 1282

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102
                  L+    ++VS +    VA +L L   +   S+                      
Sbjct: 1283 DRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNN 1342

Query: 103  --LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
                    S       D++E+ I A+++D   +            +         D    
Sbjct: 1343 SPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQYFEDMSIYDTFAN 1402

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDH--------DPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 +    +T ++  T               +PR    V +     A+G+  S R A+
Sbjct: 1403 KHPTTYFHNRLTIDFGCTSYCLKAGEVQMVDGTEPRVYAAVIVHDEFVAEGIASSVRYAK 1462

Query: 213  QVAAAEVLKRE 223
              A+   L + 
Sbjct: 1463 IKASEAALAKL 1473



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 13   IGYAFANRSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLF 60
            +        L  +ALT        H            ++YERLEFLGD  L +  S  LF
Sbjct: 1023 LHINIK-THLALEALTKDSDNTEEHRGEQIHFQRGMGKNYERLEFLGDCFLKMATSISLF 1081

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
                   E +  V+   L+  +     A  + L  FIR  
Sbjct: 1082 AMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFIRTQ 1121


>gi|195424855|gb|ACF96960.1| dicer-1 [Litopenaeus vannamei]
          Length = 2473

 Score =  108 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 84/247 (34%), Gaps = 28/247 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E++IGY F +RS L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2217 YQVFEEKIGYTFRDRSYLLQASTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 2276

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A + D   + R  S     V      +Q +    +  
Sbjct: 2277 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGPDRVIRDFVKMQEENGHKINE 2336

Query: 125  ALYLDGGIEVAGTFVDKYWK------------------------QRALKSGKFRRDAKTE 160
              Y     E       +  K                             +       +  
Sbjct: 2337 EYYFMEEDEREAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCPEIERFS 2396

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDH---DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
                      +      T + G      D +  V VEI G     G+  + R A+  AA 
Sbjct: 2397 GVVPKSPIRELLEMEPETAKFGKPERLVDGKVRVSVEIFGKGSFSGVGRNYRIAKSTAAK 2456

Query: 218  EVLKREG 224
              L+   
Sbjct: 2457 RALRHLK 2463



 Score = 41.8 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 2/98 (2%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              + +   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +    EG+
Sbjct: 1953 DLLNHPGPSPSVILQALTMSNANDGV--NLERLETIGDSFLKYAITTFLYCTYPQRHEGK 2010

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
            LS   +  VS     ++ +   L   +  +     D  
Sbjct: 2011 LSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNW 2048


>gi|261198280|ref|XP_002625542.1| dicer-like protein [Ajellomyces dermatitidis SLH14081]
 gi|239595505|gb|EEQ78086.1| dicer-like protein [Ajellomyces dermatitidis SLH14081]
          Length = 1522

 Score =  108 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 85/251 (33%), Gaps = 34/251 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
              +  R+GY F    LL  A TH+S   ++     Y+RLEFLGD +L ++    L++ + 
Sbjct: 1236 KQIGDRLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYP 1295

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102
                  L+    ++VS +    VA +L L   +   S+                      
Sbjct: 1296 DRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNN 1355

Query: 103  --LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
                    S       D++E+ I A+++D   +            +         D    
Sbjct: 1356 SPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQYFEDMSIYDTFAN 1415

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDH--------DPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 +    +T ++  T               +PR    V +     A+G+  S R A+
Sbjct: 1416 KHPTTYFHNRLTIDFGCTSYCLKAGEVQMVDGTEPRVYAAVIVHDEFVAEGIASSVRYAK 1475

Query: 213  QVAAAEVLKRE 223
              A+   L + 
Sbjct: 1476 IKASEAALAKL 1486



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 13   IGYAFANRSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLF 60
            +        L  +ALT        H            ++YERLEFLGD  L +  S  LF
Sbjct: 1036 LHINIK-THLALEALTKDSDNTEEHRGEQIHFQRGMGKNYERLEFLGDCFLKMATSISLF 1094

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
                   E +  V+   L+  +     A  + L  FIR  
Sbjct: 1095 AMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFIRTQ 1134


>gi|260654634|ref|ZP_05860124.1| ribonuclease III [Jonquetella anthropi E3_33 E1]
 gi|260630650|gb|EEX48844.1| ribonuclease III [Jonquetella anthropi E3_33 E1]
          Length = 239

 Score =  108 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 99/220 (45%), Gaps = 12/220 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHF 63
             S  +KR G  F + +LL+ ALTH S +        +RLEFLGD ++   +S  LF   
Sbjct: 14  DLSAFQKRSGLVFRDPALLDLALTHRSFAAERGGGDNQRLEFLGDALIEGAVSAELFCSR 73

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +  EG+L+ R   LV  ++ ++ A +L L   +R      +           + +++  
Sbjct: 74  TNDDEGKLTRRRARLVCQKSLARCADKLGLGELLRRGRGQTEA---------TEAMKADA 124

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
                       G    +      L       DAKT L +W  +   VT  ++ T R+GP
Sbjct: 125 FEALAAALYLDGGAEAMRGLVDLILSEPLAPLDAKTLLCQWGAS-CRVTVTFEETGRTGP 183

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH+P F V V+ +G   A G   S+ AAEQ AA +V++  
Sbjct: 184 DHEPHFFVRVQ-AGSETACGEGPSRLAAEQDAAGKVIRSL 222


>gi|188518513|ref|ZP_03003985.1| ribonuclease III [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188997913|gb|EDU67010.1| ribonuclease III [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
          Length = 239

 Score =  108 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 101/232 (43%), Gaps = 12/232 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M   ++    K+      N S+  +ALTH S ++ ++  ++Y+RLEFLGD  +  +IS  
Sbjct: 1   MDNKKFLDFLKQNRIEPKNLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNF 60

Query: 59  LFNHFDSAKEGE-------LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
           +FN+     E         ++   +++V +E  S  A++L L  F+ +   L +D  + M
Sbjct: 61  IFNYKIKDNEKMRSLDEGEMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARM 120

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
             I  D+ E+ I A+  D GI+     ++K   +   +     +     + +    +   
Sbjct: 121 EKIYEDIFEAFIGAVAQDQGIKKVSLILEKTLIKYFREGQINYQKDYKTIFQEQAQRINK 180

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            P      R+  D      V +  + L    G+  +++ AE +AA   + + 
Sbjct: 181 KPIMYKLVRNEGDKK---EVHLVWNDLIYGIGIASTRKEAEILAAKNAILKL 229


>gi|256820149|ref|YP_003141428.1| ribonuclease III [Capnocytophaga ochracea DSM 7271]
 gi|256581732|gb|ACU92867.1| ribonuclease III [Capnocytophaga ochracea DSM 7271]
          Length = 252

 Score =  108 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 3/222 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFN 61
           + Y+ +++ +G+   N S   +A TH S     + ++SYERLEFLGD ILG +I+  +F 
Sbjct: 21  IFYTKIKELLGFPPKNLSYYSEAFTHPSYQFQKATRKSYERLEFLGDAILGAVIADYIFT 80

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     EG L+   + +V     +Q+ +++ L  F+R     R+   +   ++   ++ +
Sbjct: 81  NAPEQDEGYLTKMRSKIVERRNLNQLGKDMRLLDFLRTKLTPRQLGNNITGNLFEALIGA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +          +     +   +       GK     K+ L EW                 
Sbjct: 141 IYLDRGYKACFKFIERELILPYINIKNLEGKVISH-KSLLIEWCQKHKLDFAFEAEEDIE 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                  F   V + G +  +    SK+ AE++AA     + 
Sbjct: 200 DCSETKFFVAKVHVQGFSVTRARSTSKKKAEEIAAKRACYKI 241


>gi|237755458|ref|ZP_04584082.1| ribonuclease III [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692390|gb|EEP61374.1| ribonuclease III [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 247

 Score =  108 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 8/204 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59
             +   LE+ IGY F ++SLL  A+TH S    Y +    YE LEFLGD ++ L+IS +L
Sbjct: 13  KDKIKQLEEIIGYTFKDKSLLLAAITHRSFVAEYHKKIQDYEVLEFLGDAVISLIISEIL 72

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              F  A+EGELS   +++VS    S++AR ++   F+ +S   +    +   S+  DV 
Sbjct: 73  IKQFPYAREGELSQYRSAIVSEAYLSKLARNVNFQDFVLISKGEKYQKGAERESLLCDVF 132

Query: 120 ESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTE---LQEWAHAKFGVTPE 174
           E++  A+Y D     ++     +K +K+  +   +     +     LQ      +G  P 
Sbjct: 133 EAVFGAIYTDCQYNLDIPREIFNKNFKEIVINDIQQENLPRDYKSLLQIETQRLYGKIPT 192

Query: 175 YKVTFRSGPDHDPRFTVVVEISGL 198
           YK+    GP+HD  FTV   +  +
Sbjct: 193 YKLISSEGPEHDKTFTVECHVEEI 216


>gi|327403887|ref|YP_004344725.1| Ribonuclease 3 [Fluviicola taffensis DSM 16823]
 gi|327319395|gb|AEA43887.1| Ribonuclease 3 [Fluviicola taffensis DSM 16823]
          Length = 240

 Score =  108 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 4/216 (1%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            R GY   N  L  +A+TH SI++  Q+  S ERLEFLGD IL  +I+  LF  F    E
Sbjct: 25  NRFGYRPKNIELFYQAVTHRSIAYHGQKDFSNERLEFLGDAILDSIIAEFLFQRFPEEDE 84

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +VS +T S++  EL+L S +R +     ++ S   +    ++ ++      
Sbjct: 85  GYLTKVKSKVVSRKTLSEIGEELELRSILRYNKGRSINLSSLEGNAFEAIIGAIYLDSSY 144

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           +   ++    + + +        +               +     E+ V           
Sbjct: 145 EETKKIIYNHIFRKYVDLNKILEEEIDFKSKLFIWSQKRRL--ALEFVVLREENNHGTWF 202

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           + V+V+++ +   +G   SK+ AEQ AA E L   G
Sbjct: 203 YEVIVQVNSVNYGKGSGNSKKLAEQAAAKETLILMG 238


>gi|289705863|ref|ZP_06502243.1| ribonuclease III [Micrococcus luteus SK58]
 gi|289557406|gb|EFD50717.1| ribonuclease III [Micrococcus luteus SK58]
          Length = 244

 Score =  108 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 104/219 (47%), Gaps = 7/219 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L +R+G        LE+ALTH S ++      + ERLEFLGD +LG +++  +F  +   
Sbjct: 19  LFERLGVHIT-AGTLERALTHRSFAYEQGGLPTNERLEFLGDSVLGYVVTDHIFTVYPDL 77

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+ R  ++VS    ++VAR + +  F+R+ +  R+   +   SI AD +E+LI A+
Sbjct: 78  AEGDLARRRAAVVSTRALAKVARRIGIGPFVRLGTGERRTGGADKDSILADTLEALIGAV 137

Query: 127 YLDGGIEVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           Y+D G   A   V ++                   +   A ++ G+          GP H
Sbjct: 138 YVDHGAVAAAALVHRHVVPLLDEPDLLRESTDWKTVVAEAASRHGLGAVRYAIEGQGPAH 197

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLK 221
           DPR+   + +        +  SK+ AE+ AAA     L+
Sbjct: 198 DPRYRATLVVGEREYDSAVASSKKQAERDAAAASWPALE 236


>gi|229140493|ref|ZP_04269048.1| Ribonuclease 3 [Bacillus cereus BDRD-ST26]
 gi|228643054|gb|EEK99330.1| Ribonuclease 3 [Bacillus cereus BDRD-ST26]
          Length = 210

 Score =  108 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 5/191 (2%)

Query: 24  EKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
            +A THSS  + ++    E  ERLEFLGD +L L +S  LF  + +  EGEL+    ++V
Sbjct: 2   IQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIV 61

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
              +  + A EL   S + +             ++ ADV E+ I ALYLD G+E    F+
Sbjct: 62  CEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFL 121

Query: 140 DKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
            +    +  +       D K++LQE          EY++    GP H+  F   V ++ +
Sbjct: 122 KEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTLNNV 181

Query: 199 APAQGMDCSKR 209
           A   G   SK+
Sbjct: 182 ALGLGSGKSKK 192


>gi|220912984|ref|YP_002488293.1| ribonuclease III [Arthrobacter chlorophenolicus A6]
 gi|219859862|gb|ACL40204.1| Ribonuclease III [Arthrobacter chlorophenolicus A6]
          Length = 242

 Score =  108 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 91/212 (42%), Gaps = 6/212 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           MS+     L KR+G    +   L  ALTH S ++      + ERLEFLGD ILG  ++  
Sbjct: 1   MSST--EELLKRLGVTI-DAGTLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDS 57

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+       EGEL+ R +++VS    + + R L +  FI +    +        SI AD 
Sbjct: 58  LYRDNPDLPEGELAKRRSAVVSTRALANIGRSLGIGEFIYLGQGEKLTEGKNKASILADT 117

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           +E+LI A Y+   IE A   V +         +            +   A   +   +  
Sbjct: 118 MEALIGATYVSNDIETARQLVMRLIGPLLKDAAVLGAGTDWKTSIQELAASRQLGTIHYA 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              +GPDH   F+ V+ I G    +G   SK+
Sbjct: 178 VEGAGPDHARTFSAVLNIGGKPYGKGTGHSKK 209


>gi|224025527|ref|ZP_03643893.1| hypothetical protein BACCOPRO_02267 [Bacteroides coprophilus DSM
           18228]
 gi|224018763|gb|EEF76761.1| hypothetical protein BACCOPRO_02267 [Bacteroides coprophilus DSM
           18228]
          Length = 308

 Score =  108 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 4/219 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             + +G+   N  + ++AL H S S        + ERLEFLGD IL  +++ +++  F+ 
Sbjct: 23  FYRMLGFYPRNIEIYQQALLHKSSSVKEKGRLLNNERLEFLGDAILDAVVADIVYKKFEG 82

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG L+   + +V  ET +QVA ++ L   I+ ++           +    +V ++   
Sbjct: 83  KREGFLTNTRSKIVQRETLNQVAVQIGLDKLIKFTTRQSSHNSYMSGNAFEALVGAIYLD 142

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
              D   +               K  +   + K++L EW+                  D 
Sbjct: 143 RGYD-ACKKFMEERIIAQYLNIDKISRKEVNFKSKLIEWSQKNKFEVEFRLTGQSIDSDS 201

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +P F   V +  +   +G   SK+ ++Q+AA E LK+  
Sbjct: 202 NPIFETQVMVENIPAGEGKGYSKKESQQLAAQETLKQIK 240


>gi|188997575|ref|YP_001931826.1| Ribonuclease III [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932642|gb|ACD67272.1| Ribonuclease III [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 249

 Score =  108 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 8/204 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59
             +   LE+ IGY F ++SLL  A+TH S    Y +    YE LEFLGD ++ L+IS +L
Sbjct: 18  KDKVKQLEQIIGYTFKDKSLLLAAITHRSFVAEYHKKIPDYEVLEFLGDAVISLIISEIL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              F  A+EGELS   +++VS    S++AR +    F+ +S   +    +   S+  DV 
Sbjct: 78  IKQFPHAREGELSQYRSAIVSEAYLSKLARNIYFQDFVLISKGEKSQKGAERESLLCDVF 137

Query: 120 ESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTE---LQEWAHAKFGVTPE 174
           E++  A+Y D     ++     +K +K+  +   +     +     LQ      +G  P 
Sbjct: 138 EAVFGAIYTDCQYNLDIPREIFNKNFKEIVINDIQQENLPRDYKSLLQIETQRLYGKIPT 197

Query: 175 YKVTFRSGPDHDPRFTVVVEISGL 198
           YK+    GP+HD  FTV   +  +
Sbjct: 198 YKLISSEGPEHDKTFTVECHVEEI 221


>gi|296270740|ref|YP_003653372.1| ribonuclease III [Thermobispora bispora DSM 43833]
 gi|296093527|gb|ADG89479.1| ribonuclease III [Thermobispora bispora DSM 43833]
          Length = 267

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 4/206 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
             L + +    +   +LE+ALTH S ++      + ERLEFLGD +LGL+++  L+ +  
Sbjct: 16  QELGEILDVELS-PDILEQALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRNHP 74

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    ++V+    + VAR LDL  ++R+            +SI AD +E+LI 
Sbjct: 75  DMPEGQLAKLRAAVVNMRALADVARSLDLGKYLRLGRGEEGTGGRDKSSILADTLEALIG 134

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGP 183
            +Y+D G++ A   V + +     +S             +   A   +         SGP
Sbjct: 135 TVYVDKGLDEAFRVVHQLFDPLIERSASLGAGLDWKTSLQELTAAESLGVPEYHVDESGP 194

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
           DH   F   V + G    +G   SK+
Sbjct: 195 DHAKSFVATVRVGGKEYGKGTGRSKK 220


>gi|261337990|ref|ZP_05965874.1| ribonuclease III [Bifidobacterium gallicum DSM 20093]
 gi|270277492|gb|EFA23346.1| ribonuclease III [Bifidobacterium gallicum DSM 20093]
          Length = 247

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 93/224 (41%), Gaps = 7/224 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64
             L + +G       LL +ALTH S SH      +YERLEFLGD +L L+ +  LF    
Sbjct: 21  KPLLEALGTTLT-PDLLVEALTHRSFSHENPGTRNYERLEFLGDAVLELVATESLFTDHP 79

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EGEL+      VS E  S+VAR +L +  +I + +       +   SI  D+VESLI
Sbjct: 80  DLSEGELAKMRAKAVSEEELSRVAREKLHVGPYILLGNGEAAQGGADKDSILCDIVESLI 139

Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A +++ GIE A   V        A    +               + G+   +      G
Sbjct: 140 GATFVEHGIEGARPVVHHLIDDVLAEMMTEGPALDWKTSLVIKAHELGMDEPHFRMAVGG 199

Query: 183 PDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           P++ P +   V I         G   SKR A+  AA E      
Sbjct: 200 PEYAPEYHAQVLIGDDDRVWGTGDGSSKRKAQLAAAHEAWLELN 243


>gi|195331135|ref|XP_002032258.1| GM23619 [Drosophila sechellia]
 gi|194121201|gb|EDW43244.1| GM23619 [Drosophila sechellia]
          Length = 2249

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 86/248 (34%), Gaps = 29/248 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1993 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2052

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A       F R  S    DV      IQ +   S+  
Sbjct: 2053 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2112

Query: 125  ALYLDGGIEVAG---------------------TFVDKYWKQRALKSGKFRRDAKTELQE 163
              YL    E                                             + E   
Sbjct: 2113 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2172

Query: 164  WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +  K  +         T + G         R  V V++      +G+  + R A+  AA
Sbjct: 2173 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAA 2232

Query: 217  AEVLKREG 224
               L++  
Sbjct: 2233 KCALRQLK 2240



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1723 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1780

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1781 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1821


>gi|58700160|ref|ZP_00374668.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58533321|gb|EAL57812.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 183

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 96/178 (53%)

Query: 47  GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
           GD +L +++S  LF  F   KEG L+ R   LV   T + VA+E+ L SFI +++  R +
Sbjct: 1   GDSVLNMVVSATLFKLFPEEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCN 60

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
                     + +E+LI A+Y+DGG+E    F+ +YW++ A       +D KT LQEW  
Sbjct: 61  GGRCNLKNLENSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQ 120

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                 PEY++  ++GP H+P FT+ V I           SK+ AEQ AA  +L++ G
Sbjct: 121 KNKLPLPEYELVKQTGPAHNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKIG 178


>gi|161621443|ref|NP_108012.2| ribonuclease III [Mesorhizobium loti MAFF303099]
          Length = 237

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 100/203 (49%), Positives = 130/203 (64%), Gaps = 1/203 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDS 65
             L +R G+AFA+R  L++ALTH+S   +     YER EFLGDR+LGL+++ +L   F  
Sbjct: 14  EALVERTGHAFADRQRLQRALTHASARGANAGTDYERFEFLGDRVLGLVVADMLLAAFPD 73

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EGELS+R N+LV+AE  S++A  + L   IR  SD+R        +++AD +ESLIA 
Sbjct: 74  AAEGELSLRLNALVNAEALSEIAEHIGLPDLIRAGSDVRGLEGRKRVNLRADALESLIAV 133

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LYLDGG+E A  F+ KYW+ R+  SG  RRDAKTELQEWAH      P Y++  R GPDH
Sbjct: 134 LYLDGGLEAARAFIHKYWQPRSQASGAARRDAKTELQEWAHQAASAVPAYQIDSREGPDH 193

Query: 186 DPRFTVVVEISGLAPAQGMDCSK 208
           DP FTV V +    PA G   SK
Sbjct: 194 DPLFTVSVRVGAFQPATGSGRSK 216


>gi|295397856|ref|ZP_06807919.1| ribonuclease III [Aerococcus viridans ATCC 11563]
 gi|294973901|gb|EFG49665.1| ribonuclease III [Aerococcus viridans ATCC 11563]
          Length = 247

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 81/204 (39%), Gaps = 5/204 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L  R G    + +   +A THSS  +  Q       ER+EFLGD +L L++S  L+ ++ 
Sbjct: 26  LADRFGLEIQDETHYIEAFTHSSYVNENQNLALQDNERIEFLGDAVLELVVSNYLYRNYP 85

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG +S     +V  E+ ++   E     F+R+ +           S+  D+ ES++ 
Sbjct: 86  EMDEGRMSSLRALIVREESLAKRCVECGFDQFVRLGNGEEASNGRKRPSLLCDLFESVLG 145

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF-RSGP 183
           A+YLD G++     +      +       R        +    K G           SGP
Sbjct: 146 AIYLDLGLDAIEHLMSLTIYPKIKNGDFTRLSDAKTALQEELQKEGAIQLAYELESESGP 205

Query: 184 DHDPRFTVVVEISGLAPAQGMDCS 207
            H   F V V +      +G+  S
Sbjct: 206 AHSKEFHVAVRLYDEIIGRGVGHS 229


>gi|195572986|ref|XP_002104476.1| Dicer-1 [Drosophila simulans]
 gi|194200403|gb|EDX13979.1| Dicer-1 [Drosophila simulans]
          Length = 1533

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 86/248 (34%), Gaps = 29/248 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1277 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1336

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A       F R  S    DV      IQ +   S+  
Sbjct: 1337 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 1396

Query: 125  ALYLDGGIEVAG---------------------TFVDKYWKQRALKSGKFRRDAKTELQE 163
              YL    E                                             + E   
Sbjct: 1397 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 1456

Query: 164  WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +  K  +         T + G         R  V V++      +G+  + R A+  AA
Sbjct: 1457 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAA 1516

Query: 217  AEVLKREG 224
               L++  
Sbjct: 1517 KCALRQLK 1524



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1007 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1064

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1065 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1105


>gi|183508806|ref|ZP_02958264.1| ribonuclease III [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|182675758|gb|EDT87663.1| ribonuclease III [Ureaplasma parvum serovar 14 str. ATCC 33697]
          Length = 236

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 12/232 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M   ++    K+      N S+  +ALTH S ++ ++  ++Y+RLEFLGD  +  +IS  
Sbjct: 1   MDNKKFLDFLKQNRIEPKNLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNF 60

Query: 59  LFNHFDSAKEGEL-------SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
           +FN+     E          +   +++V +E  S  A++L L  F+ +   L +D  + M
Sbjct: 61  IFNYKIKDNEKMHSLDEGEMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARM 120

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
             I  D+ E+ I A+  D GI+     ++K   +   +     +     + +    +   
Sbjct: 121 EKIYEDIFEAFIGAVAQDQGIKKVSLILEKTLIKYFREGQINYQKDYKTIFQEQAQRINK 180

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            P      R+  D      V +  + L    G+  +++ AE +AA   + + 
Sbjct: 181 KPIMYKLVRNEGDKK---EVHLVWNDLIYGIGIASTRKEAEILAAKNAILKL 229


>gi|242018047|ref|XP_002429494.1| dicer-1, putative [Pediculus humanus corporis]
 gi|212514432|gb|EEB16756.1| dicer-1, putative [Pediculus humanus corporis]
          Length = 2179

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 81/248 (32%), Gaps = 29/248 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ I Y F +RS L +ALTH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1914 FDIFEESIKYRFRDRSYLLQALTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 1973

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A   D   + R       +V       Q     ++  
Sbjct: 1974 HHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLCPSLNEVVDRFVRFQQANGHAISE 2033

Query: 125  ALYLDGGIEVAGTFVDKYWK------------------------QRALKSGKFRRDAKTE 160
              YL    E       +  K                         R              
Sbjct: 2034 EFYLIEEEECEEAEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWRVYYRIMKNEIELFS 2093

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
                      +      T + G         R  V VE+ G     G+  + R A+  AA
Sbjct: 2094 TNVPKSPIRELFELEPETAQFGKPEKLADGRRVRVSVEVFGKGIFNGIGRNYRIAKCTAA 2153

Query: 217  AEVLKREG 224
               LK+  
Sbjct: 2154 KCALKQLK 2161



 Score = 43.4 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             SL+ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1639 PSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCIYENVHEGKLSHLRSKQV 1696

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            S     ++ R+  L   +  +     D            +E  + 
Sbjct: 1697 SNFNLYRLGRKKMLGESMVATKFEPHDNWLPPCYYVPRELERALI 1741


>gi|269792704|ref|YP_003317608.1| ribonuclease III [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100339|gb|ACZ19326.1| ribonuclease III [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 226

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
              L+ R+GY FA+  LL +ALTHSS ++  Q     ERLEFLGD +LGL ++  L+   
Sbjct: 11  LEELQDRVGYRFADTQLLIEALTHSSFANQAQLGYCNERLEFLGDSVLGLCVAEELYRRH 70

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S +EG L+   ++ VS+   ++  R L L   +RV    +         + AD +E+LI
Sbjct: 71  PSEREGRLTKLKSTGVSSHNLARSGRVLGLDRVLRVG---KAIKGGPSEGMVADAMEALI 127

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG+E A   V ++            +D K+ LQE A       P Y++    GP
Sbjct: 128 GAVYLDGGLEAARGIVSRHVS----LDSLSSQDPKSALQEMAQRLGIPLPSYRLVEVRGP 183

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
           +H   F V V + G     G   S+R
Sbjct: 184 EHRATFVVQVWLKGELMGVGNGGSRR 209


>gi|319787580|ref|YP_004147055.1| ribonuclease III [Pseudoxanthomonas suwonensis 11-1]
 gi|317466092|gb|ADV27824.1| ribonuclease III [Pseudoxanthomonas suwonensis 11-1]
          Length = 230

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 74/216 (34%), Positives = 110/216 (50%), Gaps = 6/216 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+    + +  RIG+AFA+ SLL++ALTH S         ERLEFLGD ++ L+ +  L+
Sbjct: 1   MARNDRTVVRDRIGHAFADPSLLQQALTHRSAG---SPHNERLEFLGDAVVNLIAAEALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +  A EG L+     LV   + + +AREL L   + +     K       SI AD +E
Sbjct: 58  QRWPKADEGVLTRARAELVREASLAVIARELQLGERLTLGPGELKSGGFRRDSILADALE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++AA+YLD G +     V  +++Q       G+  +DAKT LQEW   +    P Y++ 
Sbjct: 118 AVVAAIYLDAGYDACRAHVLPWFEQSIAALPVGQPGKDAKTRLQEWLQGRGKPLPAYELV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213
             SG DH   F     +S     A+G   S+R AEQ
Sbjct: 178 SESGEDHAKVFLARCTLSEPPASAEGQGTSRRLAEQ 213


>gi|255548081|ref|XP_002515097.1| dicer-1, putative [Ricinus communis]
 gi|223545577|gb|EEF47081.1| dicer-1, putative [Ricinus communis]
          Length = 1543

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 82/236 (34%), Gaps = 18/236 (7%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            ++ +  LE  +   F +R LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF  
Sbjct: 1201 SIDFDALEGALNIKFQDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFT 1260

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------ 110
            + +   G L+    + V+ E  ++VA    L   +R  S   +                 
Sbjct: 1261 YTNLPPGRLTDLRAAAVNNENFARVAVNHKLHVHLRHGSSALEKQIRDFVREVQDELSKP 1320

Query: 111  -MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
               S      ++      +   I  A             K  +         +       
Sbjct: 1321 GFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHPV 1380

Query: 170  GVTPEYKVTFRSGPDHDPRF-----TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                E       G ++         TV V I G+      +  K+ A+++AA   L
Sbjct: 1381 RELQERCQQQAEGLEYKATRSGNLATVEVFIDGVQVGVAQNPQKKMAQKLAARNAL 1436



 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y+     +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 985  QLKDIIHYSVPALKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1041

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1042 EGQLTRMRQQMVSNMVLYQYALIKGLQSYIQ 1072



 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 6/73 (8%)

Query: 158  KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAA 211
            +  L +    +    P Y+     GP H  RFT  V ++        + +     S + A
Sbjct: 1467 RQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKA 1526

Query: 212  EQVAAAEVLKREG 224
            +  AA  +L+   
Sbjct: 1527 KDSAAVLLLELLN 1539


>gi|158706456|sp|Q1DKI1|DCL1_COCIM RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease DCL1; Includes: RecName:
            Full=ATP-dependent helicase DCL1
          Length = 1464

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 84/251 (33%), Gaps = 34/251 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++K++GY F    LL  A TH S   ++     Y+RLEFLGD +L +     +++   
Sbjct: 1188 AQVKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1247

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS------------------------ 100
                  L+    ++VS +    VA  L L S +                           
Sbjct: 1248 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1307

Query: 101  SDLRKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155
                  + S       D+VE+ I A+++D G      E       K   +       +  
Sbjct: 1308 PPDAWTLTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKKHFEDMTIYDTYAN 1367

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISGLAPAQGMDCSKRAAE 212
               T       A       Y +     P  D    R    V +     A+G+  S R A+
Sbjct: 1368 KHPTTYLHNRLAIDFGCSNYCLKAGEVPYVDGPGTRVLAAVIVHDEVVAEGVASSSRYAK 1427

Query: 213  QVAAAEVLKRE 223
              A+   L + 
Sbjct: 1428 LKASEAALSKL 1438



 Score = 41.8 bits (96), Expect = 0.068,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 12/66 (18%)

Query: 20   RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT        H +          ++YERLEFLGD  L +  S  LF       
Sbjct: 1028 PELALEALTKDSDNTDEHRAQQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1087

Query: 68   EGELSV 73
            E     
Sbjct: 1088 ERGWYP 1093


>gi|119174400|ref|XP_001239561.1| hypothetical protein CIMG_09182 [Coccidioides immitis RS]
          Length = 1357

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 84/251 (33%), Gaps = 34/251 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++K++GY F    LL  A TH S   ++     Y+RLEFLGD +L +     +++   
Sbjct: 1081 AQVKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1140

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS------------------------ 100
                  L+    ++VS +    VA  L L S +                           
Sbjct: 1141 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1200

Query: 101  SDLRKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155
                  + S       D+VE+ I A+++D G      E       K   +       +  
Sbjct: 1201 PPDAWTLTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKKHFEDMTIYDTYAN 1260

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISGLAPAQGMDCSKRAAE 212
               T       A       Y +     P  D    R    V +     A+G+  S R A+
Sbjct: 1261 KHPTTYLHNRLAIDFGCSNYCLKAGEVPYVDGPGTRVLAAVIVHDEVVAEGVASSSRYAK 1320

Query: 213  QVAAAEVLKRE 223
              A+   L + 
Sbjct: 1321 LKASEAALSKL 1331



 Score = 41.8 bits (96), Expect = 0.068,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 12/66 (18%)

Query: 20  RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L  +ALT        H +          ++YERLEFLGD  L +  S  LF       
Sbjct: 921 PELALEALTKDSDNTDEHRAQQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 980

Query: 68  EGELSV 73
           E     
Sbjct: 981 ERGWYP 986


>gi|319784504|ref|YP_004143980.1| ribonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170392|gb|ADV13930.1| ribonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 251

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 120/197 (60%), Gaps = 1/197 (0%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           ++ + GY F +  LLE ALTHSS   +   + +RLEFLGDR+LGL+++ +LF  F  A E
Sbjct: 15  VKAKTGYVFKDIRLLETALTHSSAVKA-ATNNQRLEFLGDRVLGLVVADMLFEKFPDAPE 73

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GE++ RFN+LV A TCS++  E+ L   +R  S L+        +  AD VE+LIAA+Y+
Sbjct: 74  GEIAPRFNALVDARTCSEIGIEMQLEDLVRADSALKMRSRGSGGNYLADAVEALIAAVYV 133

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGGIE A  FV +YW+ R+        + K++LQEW      + PEY +  R GPDH P 
Sbjct: 134 DGGIEAARRFVLRYWEPRSHTVIAKPLNPKSDLQEWIAKTSDIRPEYVIDKREGPDHQPV 193

Query: 189 FTVVVEISGLAPAQGMD 205
           FTV +++ G AP  G  
Sbjct: 194 FTVSLQVRGFAPISGTG 210


>gi|167234451|ref|NP_001107840.1| Dicer-2 [Tribolium castaneum]
 gi|270002830|gb|EEZ99277.1| hypothetical protein TcasGA2_TC001108 [Tribolium castaneum]
          Length = 1623

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 94/257 (36%), Gaps = 39/257 (15%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63
            ++  +E+R+GY F NR+ L +ALTHSS S +    SYERLEFLGD +L  LI+  +F H 
Sbjct: 1370 QWREIEQRLGYTFTNRAFLLQALTHSSYSPNRITLSYERLEFLGDAVLDFLITCYIFEHC 1429

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------ 111
               + G+++   +SLV+  T + +        F+ + +   +                  
Sbjct: 1430 GHLEPGQVTDLRSSLVNNNTFASLVVRCGFHKFLLMMNSNLQGHIDKFADYLASKNYVID 1489

Query: 112  --------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
                                  +  D+ E+L  A+YLD   ++   +   Y         
Sbjct: 1490 DEVLILLEEDEMNIAEYVDVPKVLGDIFEALAGAIYLDSNKDLKTVWRVFYKIIWREIDL 1549

Query: 152  KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSK 208
              +   K  ++          P++      G         F             G   +K
Sbjct: 1550 FSKNVPKNVIRRLYECHTVYPPQFSKALEVGNQKTMVSLDFMCE---GRKKRVHGFGTNK 1606

Query: 209  RAAEQVAAAEVLKREGI 225
              A++ AA   L+   +
Sbjct: 1607 ILAKRAAAKIALRALKL 1623



 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 7/92 (7%)

Query: 7    STLEKRIGYAFAN--RSLLE--KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              L+  +   F N   +L +  +ALT +  +     + ERLE LGD  L  + S  +   
Sbjct: 1127 KQLQ-ILDVQFDNQSPNLCQIYQALTAAEANDIV--NLERLETLGDSFLKFVASLYIIFK 1183

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLA 94
            F +  EG+ +     LVS +    +    +L 
Sbjct: 1184 FPTYNEGKSTTLKGKLVSNKNLYYLGVRKNLG 1215


>gi|194246455|ref|YP_002004094.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma mali]
 gi|259491959|sp|B3R075|RNC_PHYMT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|193806812|emb|CAP18239.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma mali]
          Length = 225

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 7/204 (3%)

Query: 20  RSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            SL + ++THSS ++  +   +  ERLEFLGD ++ LL++  L+   +   EG +S +  
Sbjct: 16  ISLYKMSITHSSYANENKLKKKDNERLEFLGDAVINLLMADYLYTKKEKENEGFMSKKRA 75

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
             V  ++    A+ + L ++I +    +    +   SI A+  E+L  A+YLD G  +A 
Sbjct: 76  QSVCEDSLVIYAKSIQLQNYILLGKGEK--NKNINNSILANAFEALFGAIYLDLGYYIAK 133

Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
                    R                +        T  Y +T   G DH   FT  V + 
Sbjct: 134 KVFILIVIPRLSNIIDNIDFKTQ--LQELVQSQKKTISYYITEEKGLDHSKEFTAEVFLE 191

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVL 220
                +G   +K++AEQ AA  VL
Sbjct: 192 KKNVGRGFGKTKKSAEQDAARYVL 215


>gi|71894685|ref|YP_278793.1| dsRNA-specific ribonuclease III [Mycoplasma synoviae 53]
 gi|90101629|sp|Q4A589|RNC_MYCS5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71851473|gb|AAZ44082.1| dsRNA-specific ribonuclease III [Mycoplasma synoviae 53]
          Length = 231

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 107/233 (45%), Gaps = 12/233 (5%)

Query: 1   MSALR------YSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILG 52
           M               ++    + N  L  +A TH + S  +   + YERLEFLGD ++G
Sbjct: 1   MEKDNQPSIEELKAFLQKNNIEYKNIDLFIEATTHKTYSKVNKNSKDYERLEFLGDSLVG 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
            LIS      F S + GELS   + LV      ++A++L +   I+      ++     +
Sbjct: 61  FLISDYCVREFSSLEPGELSRLRSKLVDKLALFKIAQKLKVEQIIKTGPKKARNEVLSSS 120

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGV 171
           ++ +DVVE+LIAA+YLD G++ A  F+  ++ + A K   K  +D K+ELQE+       
Sbjct: 121 NVLSDVVEALIAAIYLDQGMQSAKDFIKSHFYEIANKAQNKPNKDPKSELQEYFQTISAE 180

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           T +Y+        +   F             G+  SK+ AE+ AAA  L +  
Sbjct: 181 TVKYETIEI---PNKRSFESKAWHLNKIYGTGVGLSKKDAEKNAAANALSKLK 230


>gi|307564748|ref|ZP_07627276.1| ribonuclease III [Prevotella amnii CRIS 21A-A]
 gi|307346470|gb|EFN91779.1| ribonuclease III [Prevotella amnii CRIS 21A-A]
          Length = 266

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L +  G+   N S  + AL H S+S   ++    + ERLEFLGD +L  +++ +++N
Sbjct: 20  YLSLYQITGFIPHNISYYKTALLHKSVSQRNKKGKLINNERLEFLGDAVLDCVVADIVYN 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F + +EG L+   + +V  ET ++V+ E+ +   ++ +       C+   +    +V +
Sbjct: 80  RFPNKREGFLTNTRSKIVKRETLNKVSTEMGINKMLKQNGHTITHNCNIAGNAFEALVGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           L      +  +      V          + +        ++     K  VT +   T   
Sbjct: 140 LYIDHGYNACMIFMRDHVCGCLLSIEKMAYQEMNYKSKLIEWTQKNKVSVTFDEVKTSID 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             + +P F   V I  +   +G   +K+ ++Q AA    KR 
Sbjct: 200 -ENGNPIFLAQVVIGNVRCEEGKGFTKKESQQNAAKLTYKRI 240


>gi|319792225|ref|YP_004153865.1| ribonuclease iii [Variovorax paradoxus EPS]
 gi|315594688|gb|ADU35754.1| ribonuclease III [Variovorax paradoxus EPS]
          Length = 228

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 110/222 (49%), Gaps = 6/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L+ R+ ++F++  LL+ ALTH S S    +  ERLEFLGD +L L +S LL+    +
Sbjct: 5   LVALQARLKHSFSDTRLLQLALTHRSFS---ADHNERLEFLGDSVLNLAVSHLLYTRLSA 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    +LV  +T  ++A EL L+  +R+     +       SI AD +E+LI A
Sbjct: 62  LPEGDLSRVRANLVKQDTLHRLALELQLSPLLRLGEGEARSGGPNRPSILADALEALIGA 121

Query: 126 LYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G   A           +   +     +D KTELQEW        P Y+V    G 
Sbjct: 122 VYLDAGFAAAEALVRRLYESVEITPRMEAAAKDPKTELQEWLQGHKMKLPMYRVAATLGA 181

Query: 184 DHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224
            H   F V  E+  L    +G+  S+RA EQ AAA +L R  
Sbjct: 182 AHKQTFDVECEVPELGFRERGIGGSRRAGEQAAAAAMLIRLK 223


>gi|257453602|ref|ZP_05618892.1| ribonuclease III [Enhydrobacter aerosaccus SK60]
 gi|257449060|gb|EEV24013.1| ribonuclease III [Enhydrobacter aerosaccus SK60]
          Length = 275

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 108/235 (45%), Gaps = 18/235 (7%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + + L  ++GY F N +L   AL H S    +  +YERLEFLGD +LG++I+  LF  + 
Sbjct: 35  QLTALFYQMGYQFDNVNLPIMALMHRSFDSEH--NYERLEFLGDALLGVIIAEALFLRYP 92

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG LS    SLV  ET   +A++L+L+ ++ +    RK       SI AD VE+LI 
Sbjct: 93  DYNEGRLSRLRASLVREETLVIIAKQLNLSDYLILGVGERKGGGRQRASILADSVEALIG 152

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD             W +   +  K +   +DAK+ LQE   A     P Y+VT   
Sbjct: 153 AIYLDSQNFDTVKACVLAWFEDLFEKVKEQKVLKDAKSRLQELLQAHQLALPRYEVTETI 212

Query: 182 GPDHDPRFTVVVEISGLA-------------PAQGMDCSKRAAEQVAAAEVLKRE 223
           G   +  F V  ++  +                     S+R AEQ  A  +L + 
Sbjct: 213 GNAPNQIFVVSCQVEIIFDNKTAKPIAPTQALVTAQGESRRIAEQRCAEAMLAKI 267


>gi|193215269|ref|YP_001996468.1| ribonuclease III [Chloroherpeton thalassium ATCC 35110]
 gi|193088746|gb|ACF14021.1| Ribonuclease III [Chloroherpeton thalassium ATCC 35110]
          Length = 269

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 66/218 (30%), Positives = 96/218 (44%), Gaps = 9/218 (4%)

Query: 1   MSALRYS-TLEKRIGYAFANRSLLEKALTHSS------ISHSYQESYERLEFLGDRILGL 53
           M +      +E   G+  +N    E ALTH S       S     S ERLEFLGD +L L
Sbjct: 34  MLSEDTKLEIESLTGFPISNVIHYETALTHRSAIDLNVYSKKKFVSNERLEFLGDAVLDL 93

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           +++  L+  F    EG+L+   + LV+A T +  AR++ L S + VS            +
Sbjct: 94  VVAECLYTRFPDYDEGKLTKLRSQLVNARTLASFARKIHLGSLLIVSEAAEAIGVRDSET 153

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGV 171
             AD  E+L+ A+YLD        F++K   +            + K+ L E+A A    
Sbjct: 154 TLADAFEALVGAIYLDSDYLQTKRFLEKKILEGIDFRELSSTDNNFKSVLLEYAQAHHLE 213

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            P Y V    GP H   FTV V I      +G+  SK+
Sbjct: 214 IPTYTVIDEEGPSHKKVFTVAVYIGDEMLGKGVGRSKK 251


>gi|282858948|ref|ZP_06268088.1| ribonuclease III [Prevotella bivia JCVIHMP010]
 gi|282588330|gb|EFB93495.1| ribonuclease III [Prevotella bivia JCVIHMP010]
          Length = 333

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L +  G    + S  + AL H S+S   ++    + ERLEFLGD +L  +++ +++ 
Sbjct: 20  YLSLYQITGLIPHDISYYKTALLHKSVSRRNEKGKLVNNERLEFLGDAVLDCVVADIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F + +EG L+   + LV  ET ++V+ E+ +   ++ +       C+   +    +V +
Sbjct: 80  RFPNKREGFLTNTRSKLVKRETLNKVSTEMGIDKMLKQNGHTVTHNCNVAGNAFEALVGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           L      D  +      V  +       + +        ++     K  V  +   T  +
Sbjct: 140 LYLDHGYDACMNFMRNRVFGHLVNVEKMAYREMNYKSKLIEWTQKNKVTVIFDEVNTS-T 198

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             + +P F   V I  +   +G   +K+ ++Q AA +  +R 
Sbjct: 199 DENGNPVFLAQVIIGNVRCEEGKGFTKKESQQNAAKQTYRRI 240


>gi|307718753|ref|YP_003874285.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM
           6192]
 gi|306532478|gb|ADN02012.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM
           6192]
 gi|315185644|gb|EFU19412.1| RNAse III [Spirochaeta thermophila DSM 6578]
          Length = 194

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 2/187 (1%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             ERLEFLGD +LGL ++  L+  F   +EGEL+   + +VS +T  ++AR + + +FI 
Sbjct: 3   DNERLEFLGDAVLGLAVADYLYRTFPEKQEGELARIKSFVVSEDTLYEIARRIKVDNFIL 62

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRD 156
           +S            ++ AD +E++I A +LD G E A  FV +       K    + ++D
Sbjct: 63  ISKGEEYAGGRTKKALLADAMEAIIGAYFLDAGFEAARDFVLRLVVPEIEKVVENRHKKD 122

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            KT LQE+    F   P Y+V  + GP+H+  F + V+I       G   +K+ AEQ AA
Sbjct: 123 YKTLLQEYVQKNFKTYPRYRVVEKLGPEHNRTFRIEVQIRDKKYGPGEGKNKKEAEQSAA 182

Query: 217 AEVLKRE 223
           +   +  
Sbjct: 183 SIAYRAI 189


>gi|255534075|ref|YP_003094447.1| ribonuclease III [Pedobacter heparinus DSM 2366]
 gi|255347059|gb|ACU06385.1| ribonuclease III [Pedobacter heparinus DSM 2366]
          Length = 242

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 9/231 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57
             +    L+  +G+   N +L + A  H S++    +  + S ERLEFLGD +LG +I+ 
Sbjct: 14  DKVFIRKLKNILGFVPGNATLYKMAFRHRSVAKILKNGSRSSNERLEFLGDAVLGSVIAE 73

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           LLF  +   +EG L+   + +V+    +Q+AR++     I               S+  D
Sbjct: 74  LLFKSYPYKEEGFLTEMRSKIVNRANLNQLARKMGFDQLIVFDQKAVNVQTK-HHSMLGD 132

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPE 174
             E+LI A+YLD G      F+ K   +  +          + K++L EW          
Sbjct: 133 AFEALIGAVYLDKGYNFTREFLLKRIVKPYIDIHTLELTETNFKSKLIEWCQRHGKDITF 192

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             +    G      FT+   + G +   G D +K+ AE++AA +  +   I
Sbjct: 193 DMMENEEGES-AKLFTIQAVVEGESYGIGRDYNKKNAEKLAAEKACEALSI 242


>gi|184200693|ref|YP_001854900.1| ribonuclease III [Kocuria rhizophila DC2201]
 gi|183580923|dbj|BAG29394.1| ribonuclease III [Kocuria rhizophila DC2201]
          Length = 234

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 89/206 (43%), Gaps = 6/206 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65
            L +R+G    +   L  ALTH S ++ +      ERLEFLGD +L L ++  +++ +  
Sbjct: 9   ELLERLGVDL-DTETLRIALTHRSYAYEHPGEVHNERLEFLGDAVLQLAVTDEIYHRYPE 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG L+    S+VSA   + VAR L L   IR+     +   S   SI AD  E++I A
Sbjct: 68  WDEGRLAKLRASVVSARALAGVARSLGLGPHIRLGKGEVRTHGSDKASILADTTEAVIGA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +Y   G   A   V +         +     RD KT + E        T        +GP
Sbjct: 128 VYESLGPVPARDLVLRMMVPLLEDTRVLHEGRDWKTHIVELVAQHGLGTV-RYEVEGTGP 186

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
           DH+  FT    + G     G   SK+
Sbjct: 187 DHERHFTADAVVDGNVLGHGEGTSKK 212


>gi|284045141|ref|YP_003395481.1| ribonuclease III [Conexibacter woesei DSM 14684]
 gi|283949362|gb|ADB52106.1| ribonuclease III [Conexibacter woesei DSM 14684]
          Length = 223

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 94/207 (45%), Gaps = 7/207 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH--FDSAKEGELSVRFNSLVSA 81
            +  THSS +    +SYERL FLGD +LGL ++T L+     D    G L+      VS 
Sbjct: 17  RQVFTHSSWTDRRADSYERLAFLGDSVLGLAVTTHLYPRLEADRYGAGRLTKIRAQAVSG 76

Query: 82  ETCSQVARELDLASFIR----VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
            +C +VA  L +   +R           D       + A V+E++I A+YLD G E    
Sbjct: 77  RSCMEVAERLGVPERLRAAAPQGVGQNADALVRTERVLASVIEAVIGAVYLDNGYETTAE 136

Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
            V + ++     + +   D K+ LQE    +  V      +   GP HD  F VV E++G
Sbjct: 137 AVVEAFEPEIETALEHPVDFKSALQERLARRGDVVAYSVASE-EGPPHDRVFEVVAEVAG 195

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKREG 224
                G   SK+ AEQ AA   L+  G
Sbjct: 196 NQVGSGRGRSKKDAEQEAARTALEAMG 222


>gi|116671047|ref|YP_831980.1| ribonuclease III [Arthrobacter sp. FB24]
 gi|116611156|gb|ABK03880.1| RNAse III [Arthrobacter sp. FB24]
          Length = 240

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 89/207 (42%), Gaps = 4/207 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
             L KR+G +  +   L  ALTH S ++      + ERLEFLGD ILG  ++  L+    
Sbjct: 6   EELLKRLGVSI-DAGTLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDALYRDNP 64

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+L+ R +++VS    + + R L +  +I +    +        SI AD +E+LI 
Sbjct: 65  ALPEGDLAKRRSAVVSTRALAGIGRSLGIGEYIYLGQGEKLTDGKNKASILADTMEALIG 124

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A Y+   IE A   V +        +             +   A   +   Y     SGP
Sbjct: 125 ATYVSNDIETARQLVMRLIGPLLQDAAALGAGTDWKTSIQELAASRQLGSIYYAVEGSGP 184

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRA 210
           DH   F  V+ I G    QG   SK+ 
Sbjct: 185 DHARTFVAVLRIGGTDYGQGAGRSKKE 211


>gi|110520367|gb|ABG74922.1| Dicer-like 1b protein [Physcomitrella patens]
          Length = 1695

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 89/242 (36%), Gaps = 18/242 (7%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M ++ +S+L+K +G+ F  RSLL +A+TH+S        Y+RLEF+GD +L  LI+  LF
Sbjct: 1339 MRSIDFSSLQKNVGHEFRERSLLVEAITHASRPSLGVPCYQRLEFVGDAVLDHLITRYLF 1398

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD--- 117
              + +   G L+    + V+ E  ++VA +      +R  S   +       +       
Sbjct: 1399 FKYTNLPPGRLTDLRAAAVNNENFARVAVKHSYHLHLRHGSTALETQIRNFVNDIHSELD 1458

Query: 118  ----------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
                        ++      +   I  A     +    +  K  +         +     
Sbjct: 1459 KPGVNSFGLGDFKAPKVLGDIFESIAGALFLDARLDTHQVWKVFEPLLQPMVSPETLPIH 1518

Query: 168  KFGVTPEYKVTFRSGPDH-----DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                  E       G ++     +   TV V + G+         K+ A+++ A   L +
Sbjct: 1519 PVRGLQERCQQEAEGLEYKVSRAESVATVEVYVDGVQIGSTQSAQKKMAQKLGARNALVK 1578

Query: 223  EG 224
              
Sbjct: 1579 LK 1580



 Score = 38.8 bits (88), Expect = 0.59,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+ +I Y  A   +   ALT +S   ++  SYER E L D  L  ++S  LF  F S  
Sbjct: 1121 QLKHQIDYPIAASKV---ALTAASGQETF--SYERAELLSDAYLEWVVSHRLFLKFPSKH 1175

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A E  L S+I+
Sbjct: 1176 EGQLTRMRQKIVSNSVLYQHALEKGLQSYIQ 1206


>gi|195502701|ref|XP_002098342.1| GE24009 [Drosophila yakuba]
 gi|194184443|gb|EDW98054.1| GE24009 [Drosophila yakuba]
          Length = 2250

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 86/248 (34%), Gaps = 29/248 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1994 FDEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2053

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A       F R  S    DV      IQ +   S+  
Sbjct: 2054 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2113

Query: 125  ALYLDGGIEVAG---------------------TFVDKYWKQRALKSGKFRRDAKTELQE 163
              YL    E                                             + E   
Sbjct: 2114 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2173

Query: 164  WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +  K  +         T + G         R  V V++      +G+  + R A+  AA
Sbjct: 2174 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAA 2233

Query: 217  AEVLKREG 224
               L++  
Sbjct: 2234 KCALRQLK 2241



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1724 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1781

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1782 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1822


>gi|94311354|ref|YP_584564.1| ribonuclease III [Cupriavidus metallidurans CH34]
 gi|189043335|sp|Q1LKN1|RNC_RALME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|93355206|gb|ABF09295.1| RNase III [Cupriavidus metallidurans CH34]
          Length = 256

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/209 (31%), Positives = 102/209 (48%), Gaps = 6/209 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S S    +  ERLEFLGD +L   ++ +LF  F
Sbjct: 1   MTLDALQQRLGYRFSKPELLQQALTHRSHS---AQHNERLEFLGDSVLNCAVADMLFGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L+  +R+     K       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLSDALRLGEGELKSGGFRRPSILADALEAIV 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   + K +     +       +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDAGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKR 209
           G  H  +F V   +  L     G   S+R
Sbjct: 178 GAAHSQQFEVECIVPKLEVRVFGTGASRR 206


>gi|260220751|emb|CBA28629.1| Ribonuclease 3 [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 224

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 78/210 (37%), Positives = 114/210 (54%), Gaps = 6/210 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L++R+ + F+N SLL +ALTH S S    + YERLEFLGD +LGL IS LL++   + 
Sbjct: 2   TALQQRLQHQFSNVSLLSRALTHRSFS---ADHYERLEFLGDSVLGLAISDLLYSRLGNL 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    +LV  ET  Q+A +L L   +++     +       SI AD +E++I A+
Sbjct: 59  PEGDLSRVRANLVRQETLHQLALKLGLPDVLKLGEGEMRSGGPKRASILADALEAIIGAV 118

Query: 127 YLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G   A   V + ++  +   +     +DAKTELQEW   +    P Y V    G  
Sbjct: 119 YLDAGFAKAQALVHRLFEAVEINPQMQAIGKDAKTELQEWLQGRKMKLPLYTVVGTIGAA 178

Query: 185 HDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
           H   F V  E+  L  ++ G+  S+RA EQ
Sbjct: 179 HKQSFDVECEVPELRLSERGIGGSRRAGEQ 208


>gi|256027058|ref|ZP_05440892.1| ribonuclease III [Fusobacterium sp. D11]
 gi|289765042|ref|ZP_06524420.1| ribonuclease III [Fusobacterium sp. D11]
 gi|289716597|gb|EFD80609.1| ribonuclease III [Fusobacterium sp. D11]
          Length = 234

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 113/231 (48%), Gaps = 9/231 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M       LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++
Sbjct: 1   MK--NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  + +A EG ++     +VS    ++++R++ +  F+ +S            SI A
Sbjct: 59  EYLYKSYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+++ A+Y+D  ++ A  F   + KQ      +     D K+ LQE+   +F   P 
Sbjct: 119 DSFEAILGAVYIDSNLDDARNFTLSHIKQYIDHIEEDEDILDFKSILQEYVQKEFRTVPT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           YK+    GPDH   F + V +            K+A EQ++A  +  + G+
Sbjct: 179 YKLIAERGPDHMKEFEIQVIVGNYREKAVAKNKKKA-EQLSAKALCIKLGV 228


>gi|294675193|ref|YP_003575809.1| ribonuclease III [Prevotella ruminicola 23]
 gi|294472646|gb|ADE82035.1| ribonuclease III [Prevotella ruminicola 23]
          Length = 342

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 107/226 (47%), Gaps = 11/226 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           +S+L + +G+   N    + AL H SI     +    + ERLEFLGD IL   +  +++ 
Sbjct: 21  FSSLYEILGFYPHNIEYYKMALMHKSIRKRNDKGKPLNNERLEFLGDAILDAAVGYIVYR 80

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H++  +EG L+   + LVS ET  ++A E+ L++ +  +        S  + ++ +  E+
Sbjct: 81  HYEGKREGFLTNTRSKLVSRETLGKLATEMRLSNLLISAG----HSTSHNSYVEGNAFEA 136

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G E    F +     + +   K      + K++L EW+             
Sbjct: 137 LVGAIYLDRGYEACLWFFENQVLGKFIDIDKVAFKEVNFKSKLLEWSQKNRVRLEYKLTK 196

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            +   +  P FT +V I G+    G   SK+ A+Q A+ + L+R  
Sbjct: 197 QKKDENGSPVFTYMVIIEGVNGESGSGYSKKEAQQKASKDTLQRLK 242


>gi|282877263|ref|ZP_06286095.1| RNase3 domain protein [Prevotella buccalis ATCC 35310]
 gi|281300604|gb|EFA92941.1| RNase3 domain protein [Prevotella buccalis ATCC 35310]
          Length = 350

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           YS+L + IG+   + S  + AL H S+     +    + ERLEFLGD IL   +  +++ 
Sbjct: 20  YSSLYRIIGFYPHDISYYKLALMHKSVMRRNAKGKPVNNERLEFLGDAILDATVGHIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV   T +++A E+ +   I  S        S  + +  +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRSTLNKLANEMGICKLILSSG----RNASHNSYMGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G +    F+     +  L   K      + K++L EW+           + 
Sbjct: 136 LVGAIYLDRGYDACMRFMKDRILKEMLNIDKVAYKEVNFKSKLIEWSQKNKVKINFKLLN 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                + +P F    E+ G+    G   SK+ ++Q+A+   L++  
Sbjct: 196 QGQDKNGNPVFKYAAELEGIEGCSGEGFSKKESQQLASKLTLEQLK 241


>gi|149278306|ref|ZP_01884444.1| ribonuclease III [Pedobacter sp. BAL39]
 gi|149231072|gb|EDM36453.1| ribonuclease III [Pedobacter sp. BAL39]
          Length = 242

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 9/229 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57
           + +    L+  +G+   N  L + A  H S++    +  + S ERLEFLGD ILG +++ 
Sbjct: 14  NKVFIKKLKNILGFVPGNTILYQMAFRHRSVAKVLKNGSRSSNERLEFLGDAILGSVVAE 73

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           LLF ++   +EG L+   + +V+    +Q+AR++     I               S+  D
Sbjct: 74  LLFKNYPYKEEGFLTEMRSKIVNRANLNQLARKMGFDQLIVFDQKTVNVQTK-HHSMLGD 132

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPE 174
             E+LI A+YLD G      F+ K   +  +          + K++L EW          
Sbjct: 133 AFEALIGAIYLDKGYNFTKDFLLKRIIKPYVDIHTLELTETNFKSKLIEWCQRHGKDVIF 192

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             V    G D    FT+   I G +   G D +K+ AE++AA +  +  
Sbjct: 193 EMVQNSEG-DSPKLFTISAVIDGESVGIGRDYNKKNAEKLAAEKACETL 240


>gi|320093928|ref|ZP_08025763.1| ribonuclease III [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979140|gb|EFW10648.1| ribonuclease III [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 239

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 85/206 (41%), Gaps = 5/206 (2%)

Query: 19  NRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           + +LL  AL H S ++      + ERLEFLGD +L ++I+  LF+ +    E +LS    
Sbjct: 27  DGALLSLALVHRSYANEAGGIANNERLEFLGDSVLSVVIAERLFHDYPDVAESDLSRMRA 86

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + VS    +  AR + L  ++ +             SI +D  E+LI A YL  G++ A 
Sbjct: 87  ATVSQAPLAAAARRIGLGDYVYLGKGESLHGGRDKDSILSDTFEALIGATYLTHGLQAAR 146

Query: 137 TFV-DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
             V ++          +        L      + G+          GPDH   FT    I
Sbjct: 147 RVVLERLSFLLEDAQERGHHQDWKTLLVEYSQEHGLGEVSYEVEGEGPDHRRVFTARAFI 206

Query: 196 SGL--APAQGMDCSKRAAEQVAAAEV 219
           +G+      G   SK+ AE  AA   
Sbjct: 207 AGIDGPVGSGRATSKKHAENAAAQNA 232


>gi|195109134|ref|XP_001999145.1| GI24348 [Drosophila mojavensis]
 gi|193915739|gb|EDW14606.1| GI24348 [Drosophila mojavensis]
          Length = 2256

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 88/251 (35%), Gaps = 35/251 (13%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2000 FEEFEASLGYTFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2059

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99
                G L+   ++LV+    + +A       + R                          
Sbjct: 2060 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQENGHCISE 2119

Query: 100  ------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                    +        +     DV ES+  A++LD  + +   +       +       
Sbjct: 2120 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVFSNMMKPEIEQFS 2179

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
                K+ ++E            K           R  V V++      +G+  + R A+ 
Sbjct: 2180 NSVPKSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKC 2236

Query: 214  VAAAEVLKREG 224
             AA   L++  
Sbjct: 2237 TAAKCALRQLK 2247



 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
            + +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1717 ELVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1774

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            LS   +  V+     ++ R   L  ++  +     D            +E
Sbjct: 1775 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1824


>gi|296117605|ref|ZP_06836189.1| ribonuclease III [Corynebacterium ammoniagenes DSM 20306]
 gi|295969336|gb|EFG82577.1| ribonuclease III [Corynebacterium ammoniagenes DSM 20306]
          Length = 244

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 6/209 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
           A+  + L   +     ++  L  ALTH S ++ +    + ERLEFLGD +LGL I+  L+
Sbjct: 19  AIDTAPLLASLNVELEDK-YLRLALTHRSFANEHGHLPNNERLEFLGDAVLGLSIAARLY 77

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  E ++S    S+VS    + VARE+ L +FI +             SI AD  E
Sbjct: 78  EKYPTRPESDISKMRASIVSRFGLADVAREIGLGAFILLGKGEANSNGRDKDSILADTTE 137

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L  A+YL  G E A   + + + Q+     S +   D KT LQE    +   TP+Y  T
Sbjct: 138 ALFGAIYLQHGFETARRVILELFAQKVDAAVSTRNHMDWKTTLQELCAERKLPTPDYSAT 197

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +GP+HD  FT  V + G    +G+  +
Sbjct: 198 S-TGPEHDQLFTAQVHVDGQLLGEGVGPN 225


>gi|195443910|ref|XP_002069632.1| GK11626 [Drosophila willistoni]
 gi|194165717|gb|EDW80618.1| GK11626 [Drosophila willistoni]
          Length = 2281

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 88/251 (35%), Gaps = 35/251 (13%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2025 FEEFEAILGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2084

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99
                G L+   ++LV+    + +A       F R                          
Sbjct: 2085 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISE 2144

Query: 100  ------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                    +        +     DV ES+  A++LD  + +   +       +       
Sbjct: 2145 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMKPEIEQFS 2204

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
                K+ ++E            K           R  V V++      +G+  + R A+ 
Sbjct: 2205 NSVPKSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKC 2261

Query: 214  VAAAEVLKREG 224
             AA   L++  
Sbjct: 2262 TAAKCALRQLK 2272



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1748 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1805

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1806 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1846


>gi|290343597|ref|YP_003494964.1| hypothetical protein OTV1_125 [Ostreococcus tauri virus 1]
 gi|260161012|emb|CAY39713.1| hypothetical protein OTV1_125 [Ostreococcus tauri virus 1]
          Length = 240

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 6/221 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTL 58
                  +E+ +G    + S  ++A TH S    Y++   S+E LEF+GD +LG +I+  
Sbjct: 1   MNFNQQDIEQLVGTKIRDLSFYQRAFTHKSALKEYEQFNVSFETLEFMGDSVLGFIITKF 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF+ ++  +EG L+     LV +ET + +A +L L   + +     ++  +    I  DV
Sbjct: 61  LFDRYEERQEGFLTKARTKLVRSETLAAIALKLGLNKLVLMDEKGTRNGWNNNPKILEDV 120

Query: 119 VESLIAALYLD-GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+L+ A+Y+D G +      +  Y   + +       D   + +   H +    P  + 
Sbjct: 121 FEALVGAIYMDLGLLHAKQFVLRIYNDPKYIDLNSIMVDDNFKDKLMRHCQVNNLPLPEY 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
              S  + +  F V   I+G    +G   SK+ AEQ+AA  
Sbjct: 181 EVVSHWEGN--FYVDALINGRFCGRGQAKSKKQAEQLAAKA 219


>gi|320037410|gb|EFW19347.1| hypothetical protein CPSG_03731 [Coccidioides posadasii str.
            Silveira]
          Length = 1465

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 83/251 (33%), Gaps = 34/251 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++K++GY F    LL  A TH S   ++     Y+RLEFLGD +L +     +++   
Sbjct: 1189 AQVKKKLGYVFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1248

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS------------------------ 100
                  L+    ++VS +    VA  L L S +                           
Sbjct: 1249 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1308

Query: 101  SDLRKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155
            S     + S       D+VE+ I A+++D        E       K   +       +  
Sbjct: 1309 SPDAWTLTSDPPKCLPDMVEAYIGAIFIDSNFSFEVVEEFFQKFLKKHFEDMTIYDTYAN 1368

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISGLAPAQGMDCSKRAAE 212
               T       A       Y +     P  D    R    V +      +G+  S R A+
Sbjct: 1369 KHPTTYLHNRLAIDFGCSNYCLKAGEVPYVDGPGTRVLAAVIVHDEVVTEGVASSSRYAK 1428

Query: 213  QVAAAEVLKRE 223
              A+   L + 
Sbjct: 1429 LKASEAALSKL 1439



 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 20   RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT        H +          ++YERLEFLGD  L +  S  LF       
Sbjct: 993  PELALEALTKDSDNTDEHRAQQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1052

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            E +  V+   LV  +   + A    L  FIR
Sbjct: 1053 EYDFHVKRMCLVCNQNLFKTAVRFKLYEFIR 1083


>gi|303314275|ref|XP_003067146.1| Type III restriction enzyme, res subunit family protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240106814|gb|EER25001.1| Type III restriction enzyme, res subunit family protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1487

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 83/251 (33%), Gaps = 34/251 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++K++GY F    LL  A TH S   ++     Y+RLEFLGD +L +     +++   
Sbjct: 1211 AQVKKKLGYVFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1270

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS------------------------ 100
                  L+    ++VS +    VA  L L S +                           
Sbjct: 1271 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1330

Query: 101  SDLRKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155
            S     + S       D+VE+ I A+++D        E       K   +       +  
Sbjct: 1331 SPDAWTLTSDPPKCLPDMVEAYIGAIFIDSNFSFEVVEEFFQKFLKKHFEDMTIYDTYAN 1390

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISGLAPAQGMDCSKRAAE 212
               T       A       Y +     P  D    R    V +      +G+  S R A+
Sbjct: 1391 KHPTTYLHNRLAIDFGCSNYCLKAGEVPYVDGPGTRVLAAVIVHDEVVTEGVASSSRYAK 1450

Query: 213  QVAAAEVLKRE 223
              A+   L + 
Sbjct: 1451 LKASEAALSKL 1461



 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 20   RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT        H +          ++YERLEFLGD  L +  S  LF       
Sbjct: 1015 PELALEALTKDSDNTDEHRAQQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1074

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            E +  V+   LV  +   + A    L  FIR
Sbjct: 1075 EYDFHVKRMCLVCNQNLFKTAVRFKLYEFIR 1105


>gi|304389333|ref|ZP_07371298.1| ribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315655502|ref|ZP_07908401.1| ribonuclease III [Mobiluncus curtisii ATCC 51333]
 gi|315656591|ref|ZP_07909478.1| ribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|304327451|gb|EFL94684.1| ribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315490157|gb|EFU79783.1| ribonuclease III [Mobiluncus curtisii ATCC 51333]
 gi|315492546|gb|EFU82150.1| ribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 249

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 10/212 (4%)

Query: 7   STLEKRI---GYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTL 58
           +TLE+ +   G    +  LL  A+TH S +H + ++      ERLEFLGD +L ++++  
Sbjct: 19  ATLERLLADWG-QPVDTELLVVAMTHRSFAHEHGKTGSTGTNERLEFLGDAVLQIVVTEY 77

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF +F    EGEL+    + VS    ++VAR L L  +I +     +       SI +D 
Sbjct: 78  LFRNFPDVPEGELAPMRAATVSQTPLAEVARRLHLGDYILLGIGEDRQGGREKDSILSDT 137

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKV 177
           +E+LI A YL  G+E     ++++ ++    + +       +      A          V
Sbjct: 138 LEALIGASYLTSGLESTRVTIERHLRRYLRNAPRRAVGMDWKTHLSEFAAANSLGEPEYV 197

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              SGPDH   FT  + I+G    +G   SK+
Sbjct: 198 VQGSGPDHARVFTAQIRIAGEVLGEGQGTSKK 229


>gi|237743502|ref|ZP_04573983.1| ribonuclease III [Fusobacterium sp. 7_1]
 gi|260496871|ref|ZP_05815991.1| ribonuclease III [Fusobacterium sp. 3_1_33]
 gi|229433281|gb|EEO43493.1| ribonuclease III [Fusobacterium sp. 7_1]
 gi|260196613|gb|EEW94140.1| ribonuclease III [Fusobacterium sp. 3_1_33]
          Length = 234

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 113/231 (48%), Gaps = 9/231 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M       LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++
Sbjct: 1   MK--NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  + +A EG ++     +VS    ++++R++ +  F+ +S            SI A
Sbjct: 59  EYLYKSYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+++ A+Y+D  ++ A  F   + KQ      +     D K+ LQE+   +F   P 
Sbjct: 119 DSFEAILGAVYIDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           YK+    GPDH   F + V +            K+A EQ++A  +  + G+
Sbjct: 179 YKLIAERGPDHMKEFEIQVIVGNYREKAVAKNKKKA-EQLSAKALCIKLGV 228


>gi|298346956|ref|YP_003719643.1| ribonuclease III [Mobiluncus curtisii ATCC 43063]
 gi|298237017|gb|ADI68149.1| ribonuclease III [Mobiluncus curtisii ATCC 43063]
          Length = 249

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 10/212 (4%)

Query: 7   STLEKRI---GYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTL 58
           +TLE+ +   G    +  LL  A+TH S +H + ++      ERLEFLGD +L ++++  
Sbjct: 19  ATLERLLADWG-QPVDTELLVVAMTHRSFAHEHGKTGSTGTNERLEFLGDAVLQIVVTEY 77

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF +F    EGEL+    + VS    ++VAR L L  +I +     +       SI +D 
Sbjct: 78  LFRNFPDVPEGELAPMRAATVSQTPLAEVARRLHLGDYILLGIGEDRQGGREKDSILSDT 137

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKV 177
           +E+LI A YL  G+E     ++++ ++    + +       +      A          V
Sbjct: 138 LEALIGASYLTSGLESTRVTIERHLRRYLRNAPRRAVGMDWKTHLSEFAAANSLGEPEYV 197

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              SGPDH   FT  + I+G    +G   SK+
Sbjct: 198 VQGSGPDHARVFTAQIRIAGEVLGEGQGTSKK 229


>gi|332187768|ref|ZP_08389502.1| ribonuclease III [Sphingomonas sp. S17]
 gi|332012118|gb|EGI54189.1| ribonuclease III [Sphingomonas sp. S17]
          Length = 235

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 87/204 (42%), Positives = 117/204 (57%), Gaps = 3/204 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L +  G A  + +   +ALTH S      E+YERLEFLGDR+LGL+++  L+  F +  E
Sbjct: 22  LTQIFGRAPQDSAPFHRALTHGS---QAAENYERLEFLGDRVLGLIMAEWLWEQFPNEPE 78

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS R NSLV+   C+ VAR+L +   +R+    R D  S   ++  DV+E+LI A Y 
Sbjct: 79  GQLSRRLNSLVTGPVCADVARDLGVRDHLRLGKQARDDGASDSDNVLGDVMEALIGAWYR 138

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           + G++ A  FV K W  R    GK  +  K+ LQEWA A     PEY+VT RSGP H PR
Sbjct: 139 EAGLDAARAFVRKAWGDRVHSQGKAPQHPKSALQEWAAAHNRKAPEYEVTDRSGPHHAPR 198

Query: 189 FTVVVEISGLAPAQGMDCSKRAAE 212
           FTV V I   A A     +K+ AE
Sbjct: 199 FTVTVRIGRTAEASASGANKQEAE 222


>gi|242078881|ref|XP_002444209.1| hypothetical protein SORBIDRAFT_07g015020 [Sorghum bicolor]
 gi|241940559|gb|EES13704.1| hypothetical protein SORBIDRAFT_07g015020 [Sorghum bicolor]
          Length = 291

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 92/239 (38%), Gaps = 15/239 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTL 58
           MSA   + +E  +GY FA++SL+E ALTH S    +   ++YERLE+LGD +L  L+S  
Sbjct: 22  MSAEDVAAIEAVLGYEFADKSLVELALTHGSFYFPYRPGDTYERLEYLGDGVLTCLMSRE 81

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +F ++ +   G L+    + V  E  ++VA +  L  F+R  +   +D            
Sbjct: 82  VFRNYRTLPPGPLTRLRAANVDTEKLARVAVDRGLHRFLRHKAPKLQDQICLFIEEMRKY 141

Query: 119 VESLIA-------ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
                           +   +  A  +   + ++   +  +   D    L+         
Sbjct: 142 PVHSNGLLDPPKVLCDIVESLIGAIYWDSDFNQEEVWRVFRTLADPLIGLETLGKHPVTE 201

Query: 172 TPEYKVTFRSG-----PDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKREG 224
             E+    R G      + D    V V I G   A       K  A+  AA   L +  
Sbjct: 202 LFEFCQKTRRGVKFVKDEWDKSLKVEVLIDGELVASATYGPKKEIAQNRAAKAALDKLK 260


>gi|260462323|ref|ZP_05810531.1| ribonuclease III [Mesorhizobium opportunistum WSM2075]
 gi|259031817|gb|EEW33085.1| ribonuclease III [Mesorhizobium opportunistum WSM2075]
          Length = 237

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 100/203 (49%), Positives = 128/203 (63%), Gaps = 1/203 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDS 65
             L +R G+AFA+R  L++ALTH+S   +     YER EFLGDR+LGL+++ +L   F  
Sbjct: 14  EALVERTGHAFADRQRLQRALTHASARGANAGIDYERFEFLGDRVLGLVVADMLLAAFPD 73

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EGELS+R N+LV+AE  S +A  + L   IR  SD+R        +++AD +ESLIA 
Sbjct: 74  AAEGELSLRLNALVNAEALSDIAEHIGLPDLIRAGSDIRGLDGRKRVNLRADALESLIAV 133

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LYLDGG+E A  F+ KYW  R+  SG  RRDAKTELQEWAH      P Y++  R GPDH
Sbjct: 134 LYLDGGLEAARAFIHKYWLPRSQASGAARRDAKTELQEWAHQAASAVPAYQIDSREGPDH 193

Query: 186 DPRFTVVVEISGLAPAQGMDCSK 208
           DP FTV V +    PA G   SK
Sbjct: 194 DPLFTVSVRVGTFQPAVGSGRSK 216


>gi|325954697|ref|YP_004238357.1| ribonuclease 3 [Weeksella virosa DSM 16922]
 gi|323437315|gb|ADX67779.1| Ribonuclease 3 [Weeksella virosa DSM 16922]
          Length = 256

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 90/219 (41%), Gaps = 8/219 (3%)

Query: 11  KRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +G    +  + E+A TH S           ++ERLEFLGD +LG   +  L+N     
Sbjct: 29  QLVGVKPKDIRVYEEAFTHRSAQRKDDKGQNVNFERLEFLGDALLGASAAVHLYNSAPDR 88

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG L+   + +VS    ++V+R+L L  F+  +++L          +    V ++    
Sbjct: 89  QEGYLTKMRSKIVSRRQLNEVSRKLHLTEFLIPANNLANLGEDVNGDLLEAFVGAIYVDQ 148

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
            L    +    +V   +     K  +     K+ + EW+              ++  D  
Sbjct: 149 GLLITEKFITRYVIAPYITDLEKLEQRIASHKSLILEWSQKTKNSLRFNTFEEQNAED-I 207

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKR 222
             F  VV ++    ++G   SK+ AE+ AA      L++
Sbjct: 208 QVFVSVVRLNEKVISKGRGTSKKKAEENAAKRAYYSLQK 246


>gi|254490771|ref|ZP_05103954.1| ribonuclease III [Methylophaga thiooxidans DMS010]
 gi|224463943|gb|EEF80209.1| ribonuclease III [Methylophaga thiooxydans DMS010]
          Length = 227

 Score =  106 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 106/224 (47%), Gaps = 8/224 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M   R   L K++   F    LL +ALTH S      ++ ERLE+LGD IL  +I+  LF
Sbjct: 1   MITQRQKALCKQLEITFKKTDLLLQALTHRSAD---PKNNERLEYLGDAILSFVIAEELF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N F   KEG+LS    SLV  ET +++AREL L   + +     K       SI AD VE
Sbjct: 58  NRFPQVKEGKLSRLRASLVKGETLAELARELKLGDVLILGPGELKSGGFRRESILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ ALYLDGG+E     + + +++R   +   +  +D KT LQE   ++    P Y V 
Sbjct: 118 AILGALYLDGGLESVKALILRLYQERLDNIDVTETVKDPKTRLQELLQSRKQPLPIYSVK 177

Query: 179 FRSGPDHDPRFT--VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                   P F     V +           S R AE+ AA   L
Sbjct: 178 EVKTDKKHPAFEASCQVTLLDKVV-VAQGSSHRKAEKKAAERAL 220


>gi|15150411|gb|AAK84929.1| SD01621p [Drosophila melanogaster]
          Length = 865

 Score =  106 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 88/251 (35%), Gaps = 35/251 (13%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 609 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 668

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99
               G L+   ++LV+    + +A       F R                          
Sbjct: 669 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISE 728

Query: 100 ------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                   +        +     DV ES+  A++LD  + +   +               
Sbjct: 729 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 788

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
               K+ ++E            K           R  V V++      +G+  + R A+ 
Sbjct: 789 NSVPKSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKC 845

Query: 214 VAAAEVLKREG 224
            AA   L++  
Sbjct: 846 TAAKCALRQLK 856



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
            S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 339 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 396

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +     ++ R   L  ++  +     D            +E
Sbjct: 397 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 437


>gi|17738129|ref|NP_524453.1| Dicer-1 [Drosophila melanogaster]
 gi|51316117|sp|Q9VCU9|DCR1_DROME RecName: Full=Endoribonuclease Dcr-1; Short=Protein dicer-1
 gi|7300916|gb|AAF56056.1| Dicer-1 [Drosophila melanogaster]
          Length = 2249

 Score =  106 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 88/251 (35%), Gaps = 35/251 (13%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1993 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2052

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99
                G L+   ++LV+    + +A       F R                          
Sbjct: 2053 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISE 2112

Query: 100  ------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                    +        +     DV ES+  A++LD  + +   +               
Sbjct: 2113 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2172

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
                K+ ++E            K           R  V V++      +G+  + R A+ 
Sbjct: 2173 NSVPKSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKC 2229

Query: 214  VAAAEVLKREG 224
             AA   L++  
Sbjct: 2230 TAAKCALRQLK 2240



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1723 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1780

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1781 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1821


>gi|47459246|ref|YP_016108.1| ribonuclease III [Mycoplasma mobile 163K]
 gi|81614213|sp|Q6KHN3|RNC_MYCMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|47458575|gb|AAT27897.1| ribonuclease III [Mycoplasma mobile 163K]
          Length = 246

 Score =  106 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 9/231 (3%)

Query: 1   MSAL-RYSTLEKRI---GYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLL 54
           M+   +   LE  +      F +     +ALTH + ++ +   ESY+ LEF+GD IL + 
Sbjct: 1   MNKKTKIEGLENFLTLNNIIFKDIKYYIQALTHKTYANEHANIESYDILEFIGDAILQMK 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
            S  +F HF +  EGE S+     V +   S+++++L L+  + +S             I
Sbjct: 61  SSIFIFQHFQNITEGEASLIRAKNVCSSGLSELSKKLGLSKLLLISKGSEHL--RENVKI 118

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTP 173
            AD+ ES +AA+YLD G E    F+ + +      +  +  +D K+  QE+  +      
Sbjct: 119 NADLFESFVAAIYLDLGDEKLEEFLKEIFYPYISTTNLESIKDPKSSFQEYIQSYSNEII 178

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           EYK+T          F   +  +G+    G   +K+ AE+ AA   L+   
Sbjct: 179 EYKITQLENELRSELFKAELMHNGITYGVGFGKTKKVAEEEAATRALETLK 229


>gi|119489618|ref|ZP_01622378.1| Ribonuclease III [Lyngbya sp. PCC 8106]
 gi|119454530|gb|EAW35678.1| Ribonuclease III [Lyngbya sp. PCC 8106]
          Length = 233

 Score =  106 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 13/210 (6%)

Query: 16  AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSA-KEGEL 71
              +  L  +ALTH S  + +    ++ ERLEFLGD +LG L+  LL+ ++     E ++
Sbjct: 6   TIKDEKLRLRALTHRSYVNEHPGDGKNNERLEFLGDAVLGFLVGELLYTYYPEELSEAKM 65

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           +    +LV  +   + A +L +   +R+     KD      ++ +D  E+ I A YLD G
Sbjct: 66  TRLRAALVDEQQLGKFAAQLGIGEIMRLGKGAIKDGGYQNPALLSDTFEAYIGAYYLDAG 125

Query: 132 IEVAGTFVDKYW---------KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IE    F+   +              K+ +   D+K   Q+WA A+FG  P+Y +  +SG
Sbjct: 126 IEKVREFITPLFTKVANEILGMHTEEKNSEHLIDSKNRFQQWALAEFGENPKYFIIDQSG 185

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           PDH   F   V +       G    K+ A+
Sbjct: 186 PDHAKEFIAEVRVKDQVYGLGQGRRKQDAQ 215


>gi|332830459|gb|EGK03087.1| hypothetical protein HMPREF9455_01337 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 273

 Score =  106 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +  K +G+   N +L E+AL H S S   ++    + ERLEFLGD IL  +++ ++F 
Sbjct: 20  YVSFCKILGFYPYNITLYEQALLHKSSSIKLKDGRWINNERLEFLGDAILDAIVADIVFK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F+  KEG L+   + +V  ET +++A E+ +   I+ S+           +     + +
Sbjct: 80  EFEYKKEGFLTNMRSKIVQRETLNRLALEIGIDKLIKTSTRNTTPNTHMYGNALEAFIGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +                + +        + +   + K+ L EW+  +        +    
Sbjct: 140 IYLDQGYRAAKRFVFERLIQEHLNIESVA-ELEANYKSRLIEWSQKQKISVSFDLIDSFV 198

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             ++ P F   V I G     G   SK+ ++Q AA E   + 
Sbjct: 199 DENNTPIFKTAVIIMGEQAGLGTGYSKKESQQKAAKEAYNKL 240


>gi|282881269|ref|ZP_06289955.1| ribonuclease III [Prevotella timonensis CRIS 5C-B1]
 gi|281304859|gb|EFA96933.1| ribonuclease III [Prevotella timonensis CRIS 5C-B1]
          Length = 347

 Score =  106 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           YS+L   IG+   + S  + AL H S+     +    + ERLEFLGD +L  ++  +++ 
Sbjct: 20  YSSLYNIIGFYPHDISYYKLALMHKSVMRRNAKGRPVNNERLEFLGDAVLDAIVGHIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV   T +++A E+ +   +  S            +    +V +
Sbjct: 80  HFPGKREGFLTNTRSKLVQRSTLNKLANEMGICKLLLSSGRSSSHNSYVGGNAFEALVGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +      D  +      +          + K     K++L EW+           +  + 
Sbjct: 140 IYLDRGYDACMRFMKNRILSEMLNIDKVAYKEVNF-KSKLIEWSQKNRVKIHFNLLEQKK 198

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             + +P F  +VE+ G+    G   SK+ ++Q+A+   L++  
Sbjct: 199 DENGNPIFKYLVELEGIEGCSGEGFSKKESQQLASKLTLEQLK 241


>gi|194744012|ref|XP_001954492.1| GF18290 [Drosophila ananassae]
 gi|190627529|gb|EDV43053.1| GF18290 [Drosophila ananassae]
          Length = 2252

 Score =  106 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 87/251 (34%), Gaps = 35/251 (13%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1996 FEEFEASLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2055

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99
                G L+   ++LV+    + +A       F R                          
Sbjct: 2056 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2115

Query: 100  ------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                    +        +     DV ES+  A++LD  + +   +               
Sbjct: 2116 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVYSNMMSPEIEQFS 2175

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
                K+ ++E            K           R  V V++      +G+  + R A+ 
Sbjct: 2176 NSVPKSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKC 2232

Query: 214  VAAAEVLKREG 224
             AA   L++  
Sbjct: 2233 TAAKCALRQLK 2243



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1727 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1784

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1785 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1825


>gi|195143531|ref|XP_002012751.1| GL23778 [Drosophila persimilis]
 gi|194101694|gb|EDW23737.1| GL23778 [Drosophila persimilis]
          Length = 2278

 Score =  106 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 85/248 (34%), Gaps = 29/248 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2022 FEEFEASLGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2081

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A       F R  S    DV      IQ +   S+  
Sbjct: 2082 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2141

Query: 125  ALYLDGGIEVAG---------------------TFVDKYWKQRALKSGKFRRDAKTELQE 163
              YL    E                                             + E   
Sbjct: 2142 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2201

Query: 164  WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +  K  +         T + G         R  V V++      +G+  + R A+  AA
Sbjct: 2202 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAA 2261

Query: 217  AEVLKREG 224
               L++  
Sbjct: 2262 KCALRQLK 2269



 Score = 42.2 bits (97), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
            + +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1738 ELVGHPGPSPSVILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1795

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            LS   +  V+     ++ R   L  ++  +     D            +E
Sbjct: 1796 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1845


>gi|74318104|ref|YP_315844.1| ribonuclease III [Thiobacillus denitrificans ATCC 25259]
 gi|90101653|sp|Q3SH50|RNC_THIDA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|74057599|gb|AAZ98039.1| ribonuclease III [Thiobacillus denitrificans ATCC 25259]
          Length = 226

 Score =  106 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 65/211 (30%), Positives = 99/211 (46%), Gaps = 7/211 (3%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M+       L++ +GY F+   LL++ALTH S       + ERLEFLGD +L   ++  L
Sbjct: 1   MNNALLDARLQQALGYTFSRSGLLQQALTHRSYG---ALNNERLEFLGDSVLNCSVARAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F    EG LS    +LV  ET +++A  L L   +R+     K       SI AD +
Sbjct: 58  YDAFPDLPEGSLSRLRANLVRQETLAEIAGALRLGDSLRLGEGELKSGGFRRPSILADAL 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           ESL  A++LD G + A   V + +     +       +D KT LQE   ++    PEY++
Sbjct: 118 ESLFGAVFLDAGFDEAQRVVRRLFDPLVAQIDPKASGKDPKTRLQEILQSRRLPLPEYRL 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQ-GMDCS 207
               G  HD  F V   ++    +  G   S
Sbjct: 178 VGTEGEAHDQSFIVECLLAKPVLSTRGTGKS 208


>gi|125773725|ref|XP_001358121.1| GA18437 [Drosophila pseudoobscura pseudoobscura]
 gi|54637856|gb|EAL27258.1| GA18437 [Drosophila pseudoobscura pseudoobscura]
          Length = 2280

 Score =  106 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 85/248 (34%), Gaps = 29/248 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2024 FEEFEASLGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2083

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A       F R  S    DV      IQ +   S+  
Sbjct: 2084 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2143

Query: 125  ALYLDGGIEVAG---------------------TFVDKYWKQRALKSGKFRRDAKTELQE 163
              YL    E                                             + E   
Sbjct: 2144 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2203

Query: 164  WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +  K  +         T + G         R  V V++      +G+  + R A+  AA
Sbjct: 2204 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAA 2263

Query: 217  AEVLKREG 224
               L++  
Sbjct: 2264 KCALRQLK 2271



 Score = 42.2 bits (97), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
            + +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1740 ELVGHPGPSPSVILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1797

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            LS   +  V+     ++ R   L  ++  +     D            +E
Sbjct: 1798 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1847


>gi|325286163|ref|YP_004261953.1| ribonuclease III [Cellulophaga lytica DSM 7489]
 gi|324321617|gb|ADY29082.1| ribonuclease III [Cellulophaga lytica DSM 7489]
          Length = 246

 Score =  106 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 85/212 (40%), Gaps = 6/212 (2%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +G+   N S+  KA  H S +   ++    +YERLEFLGD +LG +IS  L+N      
Sbjct: 25  ILGFKPKNISIYRKAFLHRSANKKDKDGNPLNYERLEFLGDSMLGTIISKYLYNEVPLGD 84

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+   + +VS E  +++ ++L+L  ++           +   ++   +V ++     
Sbjct: 85  EGYLTKMRSKIVSREHLNELGKDLELIKYVESRISKSHFGDNIHGNVFEALVGAIYLDRG 144

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
                +     V   +       G+        ++     K      Y V   +G D   
Sbjct: 145 YQYCEKFINERVIGPYVDIEQLEGRVISYKSLVIEWCQKQK--KQFNYNVYEDTGNDTLK 202

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            F V + I     A+    SK+ AE+ A+   
Sbjct: 203 HFAVKLSIDNNVIAKARATSKKKAEEAASKRA 234


>gi|260576288|ref|ZP_05844280.1| ribonuclease III [Rhodobacter sp. SW2]
 gi|259021556|gb|EEW24860.1| ribonuclease III [Rhodobacter sp. SW2]
          Length = 231

 Score =  106 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 108/198 (54%), Gaps = 1/198 (0%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +        RIG+ F    LL +A+THSSIS   +   +RLEFLGDR+LGL+++  L
Sbjct: 1   MKLSAELQAFCGRIGHVFRQPELLLRAVTHSSISSKTRPDNQRLEFLGDRVLGLVMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                +A EG+L+ RFN+LV  E C+ VAR+L L   +++             ++  D +
Sbjct: 61  LTADTAASEGQLAPRFNALVRKEACADVARDLGLGEVMKLGRSEMMSGGRRKDALLGDAL 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+YLD G + A   V + W  R        RDAKT LQEWA A+    P Y    
Sbjct: 121 EAVIAAVYLDSGFDAARGLVLRLWGGRIGAVQSDARDAKTSLQEWAQARGLPPPAYIELG 180

Query: 180 RSGPDHDPRFTVVVEISG 197
           R GPDH P+FTV V +  
Sbjct: 181 RDGPDHQPQFTVEVRLEN 198


>gi|195391256|ref|XP_002054279.1| GJ24359 [Drosophila virilis]
 gi|194152365|gb|EDW67799.1| GJ24359 [Drosophila virilis]
          Length = 2250

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 89/251 (35%), Gaps = 35/251 (13%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F++RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1994 FEEFESSLGYTFSDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2053

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99
                G L+   ++LV+    + +A       + R                          
Sbjct: 2054 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQENGHIISE 2113

Query: 100  ------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                    +        +     DV ES+  A++LD  + +   +       +       
Sbjct: 2114 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVYSNMMKPEIEQFS 2173

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
                K+ ++E            K           R  V V++      +G+  + R A+ 
Sbjct: 2174 NSVPKSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKC 2230

Query: 214  VAAAEVLKREG 224
             AA   L++  
Sbjct: 2231 TAAKCALRQLK 2241



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1717 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1774

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1775 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1815


>gi|163955118|ref|YP_001648222.1| hypothetical protein OsV5_145f [Ostreococcus virus OsV5]
 gi|163638567|gb|ABY27926.1| hypothetical protein OsV5_145f [Ostreococcus virus OsV5]
          Length = 241

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 6/221 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTL 58
                  +E+ +G    + S  ++A TH S    Y++   S+E LEF+GD +LG +I+  
Sbjct: 1   MNFNQQDIEQLVGTKIRDLSFYQRAFTHKSALKEYEQFNVSFETLEFMGDSVLGFIITKF 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF+ ++  +EG L+     LV +ET + +A +L L   + +     ++  +    I  DV
Sbjct: 61  LFDRYEERQEGFLTKARTKLVRSETLAAIALKLGLNKLVLMDEKGTRNGWNNNPKILEDV 120

Query: 119 VESLIAALYLD-GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+L+ A+Y+D G +      +  Y   + +       D   + +   H +    P  + 
Sbjct: 121 FEALVGAIYMDLGLLHAKQFVLRIYNDPKYIDLNSIMVDDNFKDKLMRHCQVNNLPLPEY 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
              S  + +  F V   I+G    +G   SK+ AEQ+AA  
Sbjct: 181 EVVSHWEGN--FYVDALINGRFCGRGQAKSKKQAEQLAAKA 219


>gi|124516572|gb|EAY58080.1| ribonuclease III [Leptospirillum rubarum]
          Length = 377

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 114/251 (45%), Gaps = 34/251 (13%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFN 61
             L + +G  F     +E+ALTH S SH         +YERLEFLGDR++GL++S  L N
Sbjct: 19  EHLIRILGLPFKPTMRIEEALTHRSASHERGRKTPIPNYERLEFLGDRVIGLIVSEYLLN 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + SA EG++   F+ +VS +T + +AR +DL S++ +            +S+ AD  ES
Sbjct: 79  TWPSASEGDIGQIFSGIVSTQTLASIARRMDLGSYMILGKGSHSSGDRENSSLLADTFES 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-------------------------- 155
           L AA+YL+ G+E     +  ++ Q  ++  +                             
Sbjct: 139 LAAAIYLEYGLETCRQVLIPWFTQPLIEIVQKIENLREIRDSSSGPGSSVIATQPAPPRA 198

Query: 156 ---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
              + K  LQ+W  +K    P Y+V    GP H  RF + V + G    +    +KR A 
Sbjct: 199 GSLNYKLLLQKWCQSKAEELPVYQVLEEIGPAHQRRFRLGVFLKGKQLGEAEGTTKRGAS 258

Query: 213 QVAAAEVLKRE 223
             AA    +R 
Sbjct: 259 VHAAKNAWERI 269


>gi|297834980|ref|XP_002885372.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331212|gb|EFH61631.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 391

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 29/244 (11%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M ++    LEK + Y F N+SLL++A+TH+S +     SYERLEF+GD  +GL IS  L+
Sbjct: 57  MESM--EALEKILNYKFKNKSLLKEAITHTSCTD--FPSYERLEFVGDSAIGLAISNYLY 112

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111
             + S +  +LS+   + VS E  ++V     L  F+R ++    +              
Sbjct: 113 LTYPSLEPHQLSLLRAANVSTEKLARVTLNHGLYQFLRRNAPSLDEKVKEFSDAVGKEDD 172

Query: 112 -----------TSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKT 159
                        + AD+ ES+  A+Y+D   ++     + +   +  +     ++  + 
Sbjct: 173 FSVAYGGLVKAPKVLADLFESVAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQP 232

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
               +              ++ G          + +     A G   +K  A  +AA E 
Sbjct: 233 VSMLFKLCHKHKKRIDIKNWKDGN----ISIADIYLDDEFLASGRAENKDIARLIAAKEA 288

Query: 220 LKRE 223
           L++ 
Sbjct: 289 LRKL 292


>gi|309355088|emb|CAP39460.2| CBR-DCR-1 protein [Caenorhabditis briggsae AF16]
          Length = 2030

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 91/256 (35%), Gaps = 40/256 (15%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            +++ LE++IGY F +R+ L +A TH+S  ++     Y+RLEFLGD +L  +I+  LF   
Sbjct: 1761 QFAQLEEKIGYRFKDRAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDV 1820

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD------ 117
                 G L+   ++LV+    + +A + +              +      +  D      
Sbjct: 1821 RQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCGDRSFDTN 1880

Query: 118  ------------------------------VVESLIAALYLDGGIEVAGTFVDKYWKQRA 147
                                          V ES+  A+YLD G  +  T+   Y   + 
Sbjct: 1881 FNTEMYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVIYHLMKG 1940

Query: 148  LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                      ++ ++E    +                   +  V V++       GM  +
Sbjct: 1941 TIETCCANPPRSPIRELMELEGTKARFS---KMERILESGKVRVTVDVGNNMRFTGMGRN 1997

Query: 208  KRAAEQVAAAEVLKRE 223
             R A+  AA   LK  
Sbjct: 1998 YRIAKATAAKRALKYL 2013



 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 2/134 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
              LL  ALT S+ S     S ER E +GD  L    +  L++      EG+LS   +  V
Sbjct: 1513 PCLLLTALTTSNASDGM--SLERFETIGDSFLKFATTDYLYHTLQEQHEGKLSWARSKEV 1570

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
            S     ++ ++L +   I  +     D       +     ++   +   +   E+     
Sbjct: 1571 SNCNLYRLGKKLGIPQLIVANKFDAHDSWLPPCYVPTCDFKAPNTSDAEEKDKEMERILS 1630

Query: 140  DKYWKQRALKSGKF 153
             +  +++      +
Sbjct: 1631 GQTIEEKPENKTGW 1644


>gi|268576156|ref|XP_002643058.1| C. briggsae CBR-DCR-1 protein [Caenorhabditis briggsae]
          Length = 1863

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 91/256 (35%), Gaps = 40/256 (15%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            +++ LE++IGY F +R+ L +A TH+S  ++     Y+RLEFLGD +L  +I+  LF   
Sbjct: 1596 QFAQLEEKIGYRFKDRAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDV 1655

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD------ 117
                 G L+   ++LV+    + +A + +              +      +  D      
Sbjct: 1656 RQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCGDRSFDTN 1715

Query: 118  ------------------------------VVESLIAALYLDGGIEVAGTFVDKYWKQRA 147
                                          V ES+  A+YLD G  +  T+   Y   + 
Sbjct: 1716 FNTEMYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVIYHLMKG 1775

Query: 148  LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                      ++ ++E    +                   +  V V++       GM  +
Sbjct: 1776 TIETCCANPPRSPIRELMELEGTKARFS---KMERILESGKVRVTVDVGNNMRFTGMGRN 1832

Query: 208  KRAAEQVAAAEVLKRE 223
             R A+  AA   LK  
Sbjct: 1833 YRIAKATAAKRALKYL 1848



 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 2/134 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
              LL  ALT S+ S     S ER E +GD  L    +  L++      EG+LS   +  V
Sbjct: 1348 PCLLLTALTTSNASDGM--SLERFETIGDSFLKFATTDYLYHTLQEQHEGKLSWARSKEV 1405

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
            S     ++ ++L +   I  +     D       +     ++   +   +   E+     
Sbjct: 1406 SNCNLYRLGKKLGIPQLIVANKFDAHDSWLPPCYVPTCDFKAPNTSDAEEKDKEMERILS 1465

Query: 140  DKYWKQRALKSGKF 153
             +  +++      +
Sbjct: 1466 GQTIEEKPENKTGW 1479


>gi|7499923|pir||T21419 hypothetical protein F26E4.13 - Caenorhabditis elegans
          Length = 412

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 13/228 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63
           +  LE+R+G  F N  LL KA T  +I ++   +   +RLE+LGD +L L++S  L+  F
Sbjct: 162 FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 221

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG +S+   SLVS +T + V  +L    F+  +     +        +AD+VE+ I
Sbjct: 222 PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAPYKTPE---LKLKDKADLVEAFI 278

Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV------TPEY 175
            ALY+D GIE    F+   +  R       +   DAK+ LQ+W  A           PEY
Sbjct: 279 GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRDPSSSEPDMPEY 338

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +V    GP ++  F + V   G   A   + +   AE   A   L   
Sbjct: 339 RVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANL 386



 Score = 42.6 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             ERLE+LGD ++ L++S  L+       EG L+    +LV     + +A+   +   ++
Sbjct: 18  HNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQ 77

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158
            S        +      A+  E+++AA+YLDGG+        K          +      
Sbjct: 78  YSHGADLINVAEFKHALANAFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLKEKWDHIN 137

Query: 159 TE 160
             
Sbjct: 138 EH 139


>gi|321461347|gb|EFX72380.1| hypothetical protein DAPPUDRAFT_308316 [Daphnia pulex]
          Length = 1741

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 87/240 (36%), Gaps = 22/240 (9%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + + E++I Y F +RS L +A +H+S   +   + Y+RLEFLGD +L  LI+  L+ +  
Sbjct: 1490 FESFEEKICYKFNDRSYLLQAFSHASYYLNRLTDCYQRLEFLGDAVLDYLITRYLYENLP 1549

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+  T + +A   +   + +  S     +       Q +   S+  
Sbjct: 1550 RHPPGALTDLRSALVNNTTFAVLAERYEFHRYFKHLSPSLNQIMDKFIKAQEENGHSINE 1609

Query: 125  ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR---- 180
              Y+    +V    V     +    +               +         + +      
Sbjct: 1610 EYYMIEAEDVEVPKVLGDVFESVAGAIYLDSHMSLNAVWRVYYNMMKKEIDEFSKNVPKS 1669

Query: 181  --------------SGPDH---DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                           G      D R  V V++ G    +G+  + R A+  AA   L+  
Sbjct: 1670 PIRELLELETDRVKFGKAERLPDGRLRVTVDVIGKGTFKGIGRNYRIAKCTAAKYALRTL 1729



 Score = 43.8 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +A T SS +     + ERLE +GD  L   I+T L+  + S  EGELS   +  V
Sbjct: 1239 PSVILQAFTMSSANDGI--NLERLETIGDSFLKYAITTYLYCKYSSIHEGELSHLRSRQV 1296

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVC 108
            S     Q+ ++      +  +     +  
Sbjct: 1297 SNLHLYQLGKKKLFGGCMVATKFNPHENW 1325


>gi|258652105|ref|YP_003201261.1| ribonuclease III [Nakamurella multipartita DSM 44233]
 gi|258555330|gb|ACV78272.1| ribonuclease III [Nakamurella multipartita DSM 44233]
          Length = 249

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 91/198 (45%), Gaps = 3/198 (1%)

Query: 20  RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             L+  ALTH S ++ +    + ERLEFLGD +LG++++  L+      +EG L+    S
Sbjct: 23  PELVVLALTHRSFAYEHGGLPTNERLEFLGDSVLGVVVTETLYRTHPELQEGRLAKLRAS 82

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           +V+    + V R + L   +R+            +SI AD VE++I A+YL  G+EVA  
Sbjct: 83  VVNMHALAGVGRTIGLGDQLRLGKGEELTGGRDKSSIVADAVEAVIGAVYLQHGLEVARA 142

Query: 138 FVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            V + +      + +           +   A+ G+          GPDH   F   V +S
Sbjct: 143 VVLRLFADLLATAPQLGAGLDWKTSLQELAAERGLGVPEYRVSEEGPDHAKVFAARVLLS 202

Query: 197 GLAPAQGMDCSKRAAEQV 214
           G A   G   +K+ AEQ 
Sbjct: 203 GSARGTGTGRTKKEAEQN 220


>gi|186681790|ref|YP_001864986.1| ribonuclease III [Nostoc punctiforme PCC 73102]
 gi|186464242|gb|ACC80043.1| ribonuclease III [Nostoc punctiforme PCC 73102]
          Length = 228

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 78/200 (39%), Gaps = 9/200 (4%)

Query: 17  FANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F N  LL  ALTH S  H      E  ERLEFLGD +L  L    L+       E EL+ 
Sbjct: 7   FHNEKLLRHALTHRSYVHENPGEGEHNERLEFLGDALLNFLSGEYLYKCHPEMGEDELTR 66

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           R ++LV  +  ++ A E+ L   +R+      D      ++ +   E+++ A YLD    
Sbjct: 67  RRSALVDEKQLAKFAEEVGLDFRMRLGKGAILDGGYQNPNLLSSTFEAVLGAYYLDNDSN 126

Query: 134 VAGTFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDP 187
           +                + +   +   D+K   QEW        P    T + G P H P
Sbjct: 127 IEAVRAIIEPLFDSVDPKHIVVSRSNVDSKNRFQEWVQRNVTPNPPKYFTEQIGGPSHAP 186

Query: 188 RFTVVVEISGLAPAQGMDCS 207
            F   V +      +G   +
Sbjct: 187 EFIAKVLVDEKIYGEGKGRN 206


>gi|81776564|sp|Q985A6|RNC_RHILO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|14027203|dbj|BAB54157.1| ribonuclease III [Mesorhizobium loti MAFF303099]
          Length = 221

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 99/200 (49%), Positives = 129/200 (64%), Gaps = 1/200 (0%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +R G+AFA+R  L++ALTH+S   +     YER EFLGDR+LGL+++ +L   F  A E
Sbjct: 1   MERTGHAFADRQRLQRALTHASARGANAGTDYERFEFLGDRVLGLVVADMLLAAFPDAAE 60

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS+R N+LV+AE  S++A  + L   IR  SD+R        +++AD +ESLIA LYL
Sbjct: 61  GELSLRLNALVNAEALSEIAEHIGLPDLIRAGSDVRGLEGRKRVNLRADALESLIAVLYL 120

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG+E A  F+ KYW+ R+  SG  RRDAKTELQEWAH      P Y++  R GPDHDP 
Sbjct: 121 DGGLEAARAFIHKYWQPRSQASGAARRDAKTELQEWAHQAASAVPAYQIDSREGPDHDPL 180

Query: 189 FTVVVEISGLAPAQGMDCSK 208
           FTV V +    PA G   SK
Sbjct: 181 FTVSVRVGAFQPATGSGRSK 200


>gi|195037032|ref|XP_001989969.1| GH18503 [Drosophila grimshawi]
 gi|193894165|gb|EDV93031.1| GH18503 [Drosophila grimshawi]
          Length = 2254

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 88/248 (35%), Gaps = 29/248 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1998 FEEFEASLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2057

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A       + R  S    DV      IQ +   S+  
Sbjct: 2058 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQENGHSISE 2117

Query: 125  ALYLDGGIEVAGTFVDKYWK---------------------QRALKSGKFRRDAKTELQE 163
              YL    E       +  K                         +        + E   
Sbjct: 2118 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSDLSLDVVWRVYSNMMKPEIEQFS 2177

Query: 164  WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +  K  +         T + G         R  V V++      +G+  + R A+  AA
Sbjct: 2178 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAA 2237

Query: 217  AEVLKREG 224
               L++  
Sbjct: 2238 KCALRQLK 2245



 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
            + +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1712 ELVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYMTYENVHEGK 1769

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            LS   +  V+     ++ R   L  ++  +     D            +E
Sbjct: 1770 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1819


>gi|329120775|ref|ZP_08249436.1| ribonuclease III [Neisseria bacilliformis ATCC BAA-1200]
 gi|327460145|gb|EGF06483.1| ribonuclease III [Neisseria bacilliformis ATCC BAA-1200]
          Length = 316

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 66/218 (30%), Positives = 106/218 (48%), Gaps = 7/218 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L+  IG+ FA+ +LL++ALTH S S  +    ER EF+GD IL   ++ +LF+ +    
Sbjct: 86  RLQAAIGHTFADPALLDRALTHRSFSSRH---NERFEFVGDAILNYTVARMLFDAYPQLP 142

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG LS    +LV+    ++ A  L++   + + +   K       SI AD +E++ AA+ 
Sbjct: 143 EGRLSRLRANLVNQTVLAETAAALNIGDALLLGAGELKSGGFRRPSILADAMEAVFAAVS 202

Query: 128 LDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            D     A   V + + +         K  +DAKT LQE   A+    P+Y++  + G  
Sbjct: 203 FDADFAAAEAVVRRLFAERVANIDCGEKEAKDAKTRLQEALQAQRFALPKYRIDKQEGEG 262

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
               FTV  ++  L   +      +RAAEQ AA   L+
Sbjct: 263 SGAWFTVSCDLGELGFVSTAQAAGRRAAEQEAAKTALE 300


>gi|126662618|ref|ZP_01733617.1| putative ribonuclease III [Flavobacteria bacterium BAL38]
 gi|126625997|gb|EAZ96686.1| putative ribonuclease III [Flavobacteria bacterium BAL38]
          Length = 260

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIST 57
             + +  + K +G+        +KA TH S +         +YERLEFLGD +LG +I+ 
Sbjct: 30  DGIFFEKITKILGFEPKELRYYKKAFTHRSTNKVDEKGNPFNYERLEFLGDAMLGSVIAA 89

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+N   S  EG L+   + +VS E  +++ R+ +L  F+    +  +   +   ++   
Sbjct: 90  HLYNEVPSGDEGYLTKMRSKIVSREHLNELGRDFNLVHFVESKVNSNQFGENIHGNLFEA 149

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            + ++                + K +   A   GK        ++     K   +  +  
Sbjct: 150 FIGAIYLDRGFTYCEMFIRNKIIKQYVDIAKLEGKVISYKSLIIEWCQKEKI--SFFFDF 207

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
              +G +    F V + I     A+    SK+ AE+ A+   
Sbjct: 208 VEDNGIEGQKYFGVKLLIDQKIIARARATSKKKAEEKASQRA 249


>gi|322436776|ref|YP_004218988.1| ribonuclease III [Acidobacterium sp. MP5ACTX9]
 gi|321164503|gb|ADW70208.1| ribonuclease III [Acidobacterium sp. MP5ACTX9]
          Length = 268

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 81/233 (34%), Positives = 117/233 (50%), Gaps = 26/233 (11%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE------------SYERLEFLGDRILGLLI 55
            LE  +G+ FA  +LL  ALTH S  +   +              E+LEF+GD  LGLL 
Sbjct: 18  DLETLLGHRFARPNLLTLALTHRSFVYDSGQTAPENDLADPARDNEQLEFVGDAALGLLA 77

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           +  L   F +++EGEL+    S+VS +   +V   LDL  ++R+     K+      ++ 
Sbjct: 78  AESLCRRFPASREGELTRLRASIVSRKHLGEVGTRLDLGRWLRLGHTAEKNDGRRNAALF 137

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-----------RRDAKTELQEW 164
           A+ VE+LIAALYLDGG+EVA  FV+      A+ + +              D K+ LQE 
Sbjct: 138 ANAVEALIAALYLDGGLEVARRFVEDEIVSPAIPALEQSLGEGERFAGAVGDHKSALQEM 197

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG---LAPAQGMDCSKRAAEQV 214
             A+    PEY++   SGPDH   F+V V I G    A AQ    +K+ A+Q 
Sbjct: 198 LQAEGLGRPEYRLIAESGPDHKRLFSVEVLIEGPDSEAIAQAEGPTKKQAQQE 250


>gi|293363981|ref|ZP_06610717.1| ribonuclease III [Mycoplasma alligatoris A21JP2]
 gi|292552471|gb|EFF41245.1| ribonuclease III [Mycoplasma alligatoris A21JP2]
          Length = 226

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 5/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
            +    K       N+ +  +AL H S        ESYERLEFLGD +L L +S+ ++  
Sbjct: 6   NFDEFFKYHEIEPKNKLIYFQALKHGSFVKKQSKLESYERLEFLGDSVLQLFVSSYIYTK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F + ++G+++     +V+A + SQV+ ++ L + ++             T +Q+D+ ES+
Sbjct: 66  FPNMEQGKMTELRAKVVNANSLSQVSNKIGLINLLKTGGGQTAVSVKSSTKVQSDIFESI 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I A+++D G+  A  F+  +         K          +             +  +  
Sbjct: 126 IGAIFVDLGLNHAYKFIRLHLSSTIDNLFKHENKDPKTRLQEYFQNISRENIKYIVDQL- 184

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              +  F+       +    G   SK+ +E  AA E LK+  I
Sbjct: 185 --PNKSFSAKATHDKIVYGIGKGSSKKESEINAALEALKKLNI 225


>gi|194910778|ref|XP_001982226.1| GG12488 [Drosophila erecta]
 gi|190656864|gb|EDV54096.1| GG12488 [Drosophila erecta]
          Length = 2249

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 86/248 (34%), Gaps = 29/248 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1993 FEVFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2052

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A       F R  S    DV      IQ +   S+  
Sbjct: 2053 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2112

Query: 125  ALYLDGGIEVAG---------------------TFVDKYWKQRALKSGKFRRDAKTELQE 163
              YL    E                                             + E   
Sbjct: 2113 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2172

Query: 164  WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +  K  +         T + G         R  V V++      +G+  + R A+  AA
Sbjct: 2173 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAA 2232

Query: 217  AEVLKREG 224
               L++  
Sbjct: 2233 KCALRQLK 2240



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1723 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1780

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1781 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1821


>gi|224068194|ref|XP_002302679.1| dicer-like protein [Populus trichocarpa]
 gi|222844405|gb|EEE81952.1| dicer-like protein [Populus trichocarpa]
          Length = 1817

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 84/236 (35%), Gaps = 18/236 (7%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            ++ + TLE  +   F +R LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF  
Sbjct: 1520 SVDFDTLEGALDIKFNDRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFT 1579

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------ 110
            + +   G L+    + V+ E  ++VA +  L   +R  S   +                 
Sbjct: 1580 YTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALEKQIRDFVREVQDELLKP 1639

Query: 111  -MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
               S      ++      +   I  A             K  +         +       
Sbjct: 1640 VFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHPV 1699

Query: 170  GVTPEYKVTFRSGPDHDPRF-----TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                E       G ++         TV V I G+      +  K+ A+++AA   L
Sbjct: 1700 RELQERCQQQAEGLEYKATRSGNLATVEVFIDGVQVGVAQNPQKKMAQKLAARNAL 1755



 Score = 52.6 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 1305 ELKDIINYPVPASKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1361

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1362 EGQLTRMRQQMVSNMVLYQYALNKGLQSYIQ 1392


>gi|4378851|gb|AAD19719.1| ribonuclease III [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 222

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 73/191 (38%), Positives = 111/191 (58%), Gaps = 3/191 (1%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
            + +L  +A+TH S  +     Y+RLEFLGDR+LGL+I+  L++ F    EG+LS R NS
Sbjct: 18  KDPALFLRAMTHPSHGN---SDYQRLEFLGDRVLGLVIANWLYDLFPREPEGKLSRRLNS 74

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           LVS  +C+ +AR + L  ++R+    R D  +   ++  DV+E++I A++L+ GIE AG 
Sbjct: 75  LVSGASCASIARIVGLPQWLRLGKQARDDGAAASDNVLGDVMEAMIGAIFLESGIEAAGK 134

Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
            + KYW           +  K+ LQEWA A     P Y++  R+GP H+P FT+ V I+G
Sbjct: 135 LIHKYWAPLVTGQESAPKHPKSALQEWAAAHNRRPPVYEIVSRTGPQHNPCFTIQVSIAG 194

Query: 198 LAPAQGMDCSK 208
           +  A     SK
Sbjct: 195 VGEASAEGSSK 205


>gi|86134672|ref|ZP_01053254.1| ribonuclease III [Polaribacter sp. MED152]
 gi|85821535|gb|EAQ42682.1| ribonuclease III [Polaribacter sp. MED152]
          Length = 245

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           Y  L+  + ++    S  +KA TH S+    S     +YERLEFLGD ILG +I++ L+ 
Sbjct: 19  YFELKTLLNFSPKKISKYKKAFTHRSVQMTDSKGNPINYERLEFLGDSILGSVIASYLYK 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              +  EG L+   + +VS E  +++ ++L+L  F++ + D      +   +I   +V +
Sbjct: 79  KVPTGSEGYLTQMRSKIVSREHLNELGKDLELIRFVKSNIDQNTVGDNIHGNIFEALVGA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +      +   +     V   +       GK        ++     K     +++    S
Sbjct: 139 IYLDRGYNYAQKFIYENVILPYVNIERLEGKITSYKGLIIEWCQKQK--KKYKFETYEDS 196

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           G +    F+V V I G   A+G   SK+ AE+ A+  V
Sbjct: 197 GNEAIKHFSVKVSIDGEQVAKGRATSKKKAEEQASKRV 234


>gi|198275414|ref|ZP_03207945.1| hypothetical protein BACPLE_01577 [Bacteroides plebeius DSM 17135]
 gi|198271750|gb|EDY96020.1| hypothetical protein BACPLE_01577 [Bacteroides plebeius DSM 17135]
          Length = 339

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 4/226 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTL 58
               Y    K +G+   N  + ++AL H S S        + ERLEFLGD IL  +++ +
Sbjct: 16  DKESYLCFYKILGFYPRNIEIYQQALLHKSSSVKAKGRLLNNERLEFLGDAILDAVVADI 75

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           ++  F+  +EG L+   + +V  ET +Q+A ++ L   I+ ++           +    +
Sbjct: 76  VYKRFEGKREGFLTNTRSKIVQRETLNQIAVKIGLDKLIKYTTRQSSHNSYMCGNAFEAL 135

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           V ++          +               K  +   + K++L EW      +     + 
Sbjct: 136 VGAIYLDRGYA-TCKFFMEERIIKPYLNLEKLSRKEVNFKSKLIEWGQKNKFLIEFNLLE 194

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                  +P F   V +  +   QG   SK+ ++Q AA E L +  
Sbjct: 195 QTVDEQQNPVFETQVVVEQIPAGQGKGYSKKESQQEAAHETLNKIK 240


>gi|305665924|ref|YP_003862211.1| putative ribonuclease III [Maribacter sp. HTCC2170]
 gi|88710699|gb|EAR02931.1| putative ribonuclease III [Maribacter sp. HTCC2170]
          Length = 245

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 6/215 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + K +G+   N  + +KA  H S +         +YERLEFLGD +LG +IS  L+N   
Sbjct: 22  ITKILGFKPKNLKIFKKAFLHRSANRKDEDGNPMNYERLEFLGDAMLGTIISKHLYNEVP 81

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+   + +VS E  +++ ++L+L  F+           +   ++   +V ++  
Sbjct: 82  DGDEGYLTKMRSKIVSREHLNELGKDLNLIKFVESRIPKTHFGDNIHGNVFEALVGAIYL 141

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
               +   +     V   +       GK        ++         + +Y V   +G D
Sbjct: 142 DRGYNYCEKFIHERVILPYVDIEQLEGKVISYKSLVIEWCQK--QKKSFKYNVYEDTGKD 199

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
               F V + I     A+    SK+ AE+ A+   
Sbjct: 200 VLKHFAVKLSIGDNVVAKARATSKKKAEERASKRA 234


>gi|150024312|ref|YP_001295138.1| ribonuclease III [Flavobacterium psychrophilum JIP02/86]
 gi|149770853|emb|CAL42318.1| Ribonuclease III [Flavobacterium psychrophilum JIP02/86]
          Length = 246

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 6/217 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFN 61
           +S LEK +G+   N +   +A TH S++         +YERLEF+GD +LG +I+  LFN
Sbjct: 20  FSKLEKILGFKPLNLTHFRRAFTHRSMNKLDEKGNPMNYERLEFMGDAMLGSVIAAHLFN 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              +  EG L+   + +VS E  +++ ++L+L  F+     L+    +   ++    V +
Sbjct: 80  MSPTGDEGYLTKMRSKIVSREHLNELGKDLNLIQFLESKVTLQNFGENIHGNLFEAFVGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +          +     V K +       GK        ++     K     +      +
Sbjct: 140 IYLDRGFVYCEKFIHKKVIKPYVDIDKLEGKVISYKSLLIEWCQKEKRVFHYDIYEDEDA 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           G      F V + I G   A+    SK+ AE++A+  
Sbjct: 200 GK--LKYFGVKLSIDGKVVAKARATSKKKAEEIASKR 234


>gi|226528435|ref|NP_001141713.1| hypothetical protein LOC100273842 [Zea mays]
 gi|194705648|gb|ACF86908.1| unknown [Zea mays]
          Length = 329

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 90/239 (37%), Gaps = 15/239 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58
           MSA   + +E  +GY F ++SL+E ALTH S    +   ++YERLE+LGD +L  L+S  
Sbjct: 43  MSAKDVTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSRE 102

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +F  + + + G L+    + V  E  ++VA    L  F+R  +   +D   F        
Sbjct: 103 VFRTYRTLQPGPLTRLRAANVDTEKLARVAVHRGLHRFLRHKAPKLQDQICFFIEEMRKY 162

Query: 119 VESLIA-------ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
                           +   +  A      + ++   +  +   D    L+         
Sbjct: 163 PVHSNGLLDPPKVLCDIVESLIGAIYLDSNFDQEEVWRVFRTLADPLIGLETLGKHPVSE 222

Query: 172 TPEYKVTFRSG-----PDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKREG 224
             E+      G      + D    V V I G      +    K  A+  AA + L +  
Sbjct: 223 LFEFCQKTHRGVKFLKDEWDKSLKVQVLIDGEVVGSAIYGPKKEIAQNRAAKDALDKLK 281


>gi|300727555|ref|ZP_07060946.1| ribonuclease III [Prevotella bryantii B14]
 gi|299775258|gb|EFI71859.1| ribonuclease III [Prevotella bryantii B14]
          Length = 360

 Score =  105 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
           S+L   +G+   +  L ++AL H SI H   +    + ERLEFLGD IL  ++  +++ H
Sbjct: 21  SSLYDILGFYPHDIKLYKQALMHKSIMHRNSKGKPVNNERLEFLGDAILDAIVGDIVYQH 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F   +EG L+   + LV  +T +++A+E+ +   I  +            +    +V ++
Sbjct: 81  FPGKREGFLTNTRSKLVQRDTLNKLAQEMGITQLILSNGHSSSHNSYVGGNAFEALVGAV 140

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
                 +  +      +          + K     K++L EW+                 
Sbjct: 141 YLDRGYNACMNFMQNRILAKMINIDKVAYKEVNF-KSKLIEWSQKNRVKLSFEMTGQDKD 199

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +  P F+  V I  +  A+G   SK+ ++Q+A+   L + 
Sbjct: 200 KNGSPIFSYKVVIENIDGAEGKGYSKKESQQIASKGTLDKL 240


>gi|206603444|gb|EDZ39924.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG']
          Length = 375

 Score =  105 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 114/251 (45%), Gaps = 34/251 (13%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFN 61
             L + +G  F     +E+ALTH S SH         +YERLEFLGDR++GL++S  L N
Sbjct: 19  EHLIRILGLPFKPTMRIEEALTHRSASHERGRKTPIPNYERLEFLGDRVIGLIVSEYLLN 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + SA EG++   F+ +VS +T + +AR +DL S++ +            +S+ AD  ES
Sbjct: 79  TWPSASEGDIGQIFSGIVSTQTLASIARRMDLGSYMILGKGSHSSGDRENSSLLADTFES 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-------------------------- 155
           L AA+YL+ G+E     +  ++ Q  ++  +                             
Sbjct: 139 LAAAIYLEYGLETCRQVLIPWFTQPLIEIVQKIENLREVRDSSSGPVSSVIAAQPAPPRA 198

Query: 156 ---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
              + K  LQ+W  +K    P Y+V    GP H  RF + V + G    +    +KR A 
Sbjct: 199 GSLNFKLLLQKWCQSKAEELPVYQVLEEIGPAHQRRFRLGVFLKGKQLGEAEGTTKRGAS 258

Query: 213 QVAAAEVLKRE 223
             AA    +R 
Sbjct: 259 VHAAKNAWERI 269


>gi|282896739|ref|ZP_06304747.1| Ribonuclease III [Raphidiopsis brookii D9]
 gi|281198457|gb|EFA73345.1| Ribonuclease III [Raphidiopsis brookii D9]
          Length = 276

 Score =  105 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 8/199 (4%)

Query: 17  FANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F +  LL +ALTH S ++      +  ERLEFLGD IL  +    L++ +    E EL+ 
Sbjct: 56  FEDEKLLRQALTHRSYANENPSEGDHNERLEFLGDAILNFISGEYLYSRYPQKGEDELTR 115

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           R ++LV  +  ++ A E+ L   +R+     +D      ++ +   E++I A YLD    
Sbjct: 116 RRSALVEEKQLAKFALEVGLNVKMRLGKGTIQDGGYQNPNLLSSTFEAIIGAYYLDNNCN 175

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS-----GPDHDPR 188
           +    +        +           + +                        G  H P 
Sbjct: 176 IEAVKLAVEPLFDFVSQHTIESRYNVDSKNRFQEWVQKKLCANPPKYKTQQIGGSPHLPE 235

Query: 189 FTVVVEISGLAPAQGMDCS 207
           F   V + G    QG   +
Sbjct: 236 FFSRVLVDGKEFGQGNGKN 254


>gi|282901362|ref|ZP_06309287.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505]
 gi|281193641|gb|EFA68613.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505]
          Length = 228

 Score =  105 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 75/199 (37%), Gaps = 8/199 (4%)

Query: 17  FANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F N  L+ +ALTH S ++      +  ERLEFLGD IL  +    L++ +    E EL+ 
Sbjct: 7   FKNEKLVRQALTHRSYANENPTEGDHNERLEFLGDAILNFISGEYLYSRYPQKGEDELTR 66

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           R ++LV  +  ++ A E+ L   +R+     +D      ++ +   E++I A YLD    
Sbjct: 67  RRSALVEEKQLAKFALEVGLNLKMRLGKGTIQDGGYQNPNLLSSTFEAVIGAYYLDNNCN 126

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS-----GPDHDPR 188
           +    V        +           + +                        G  H P 
Sbjct: 127 IEAVKVAVEPLFDFVSQHTIESRYNVDSKNRFQEWVQKKLCANPPKYKTQQIGGSPHLPE 186

Query: 189 FTVVVEISGLAPAQGMDCS 207
           F   V + G    QG   +
Sbjct: 187 FASRVLVDGKEFGQGKGKN 205


>gi|312131056|ref|YP_003998396.1| rnase iii [Leadbetterella byssophila DSM 17132]
 gi|311907602|gb|ADQ18043.1| RNAse III [Leadbetterella byssophila DSM 17132]
          Length = 242

 Score =  105 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 83/223 (37%), Gaps = 7/223 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTLLFNH 62
            +E  +G   +N  L + A  H+S S       ++ES ERLEFLGD +LGL++   LF  
Sbjct: 19  AIELIVGAKPSNPLLYQLAFRHTSASKESMFKGFRESNERLEFLGDAVLGLIVGEYLFKK 78

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG L+   + +V+ E+ + V R L L + I           S +      ++ ++
Sbjct: 79  YPFKNEGFLTEIRSRIVNRESLNNVGRRLGLENLIESDGARNFQRTSLLGDAMEALIGAI 138

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
                     +   + +                   + L            E+ +    G
Sbjct: 139 YLDKGYKFTQKFVVSKLLSNHFDLDEVISNNTNYKSSILSWAQSEG--KKVEFVIVEEKG 196

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            +H   F   V + G   + G   +K+ AEQ A+        I
Sbjct: 197 KNHSREFVAQVLVDGEIISNGNGWNKKKAEQDASRRACGILKI 239


>gi|262068132|ref|ZP_06027744.1| ribonuclease III [Fusobacterium periodonticum ATCC 33693]
 gi|291378220|gb|EFE85738.1| ribonuclease III [Fusobacterium periodonticum ATCC 33693]
          Length = 234

 Score =  105 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 8/202 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M       LE ++ Y F NR+LL+ AL H S+ +  +E    + ERLE LGD +L L+++
Sbjct: 1   MK--NLLDLEHKLNYYFNNRNLLKTALLHKSLGNEKKEYKNQNNERLELLGDAVLDLIVA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ ++ SA EG ++     +VS    ++++R++ L  F+ +S            SI A
Sbjct: 59  EYLYRNYKSASEGTIAKLKAMIVSEPILAKISRQIGLGKFLMLSKGEILSGGRNRESILA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           D  E+++ A+Y+D  +E A +F           ++  +   D K+ LQE+    F   P 
Sbjct: 119 DAFEAVLGAVYMDSNLEDARSFALGHIEQYITHIEEDEDILDFKSILQEYVQKNFRTVPI 178

Query: 175 YKVTFRSGPDHDPRFTVVVEIS 196
           Y++    GPDH   F + V + 
Sbjct: 179 YELISEKGPDHMKEFEIQVVVG 200


>gi|332529447|ref|ZP_08405406.1| ribonuclease III [Hylemonella gracilis ATCC 19624]
 gi|332041093|gb|EGI77460.1| ribonuclease III [Hylemonella gracilis ATCC 19624]
          Length = 223

 Score =  105 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 115/220 (52%), Gaps = 6/220 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L+  +   F + +LL++ALTH S      +  ERLEFLGD +L L ++ LL+    +  
Sbjct: 2   RLQDHLQRPFTDAALLQRALTHRSF---CADHNERLEFLGDSVLNLAVADLLYQRLHALP 58

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS    +LV  ET  Q+A EL L+  +R+     +   +   SI AD +E+LI A+Y
Sbjct: 59  EGDLSRIRANLVKQETLHQLAMELGLSDLLRLGEGELRSGGNKRPSILADALEALIGAVY 118

Query: 128 LDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD G   A   V   ++  +   +     +D KTELQEW  A+    P+Y+V   +G  H
Sbjct: 119 LDAGYAAAQALVHHLYEKVEVTPQMQASAKDPKTELQEWLQARKLKLPQYRVVATTGAAH 178

Query: 186 DPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREG 224
              F V  E+S     + G+  S+RA EQ AAA +L+   
Sbjct: 179 RQTFDVECEVSEFQLTERGIGGSRRAGEQAAAAAMLQTLK 218


>gi|294782048|ref|ZP_06747374.1| ribonuclease III [Fusobacterium sp. 1_1_41FAA]
 gi|294480689|gb|EFG28464.1| ribonuclease III [Fusobacterium sp. 1_1_41FAA]
          Length = 234

 Score =  105 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 60/202 (29%), Positives = 102/202 (50%), Gaps = 8/202 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M       LE ++ Y F NR+LL+ AL H S+ +  +E    + ERLE LGD +L L+++
Sbjct: 1   MK--NLLDLEHKLNYYFNNRNLLKTALLHKSLGNEKKEYKNQNNERLELLGDAVLDLIVA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ ++ SA EG ++     +VS    ++++R++ L  F+ +S            SI A
Sbjct: 59  EYLYRNYKSASEGTIAKLKAMIVSEPILAKISRQIGLGKFLMLSKGEILSGGRNRESILA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+++ A+Y+D  +E A +F   + +Q      +     D K+ LQE+    F   P 
Sbjct: 119 DAFEAVLGAVYMDSNLEDARSFALNHIEQYITHIEEDEDILDFKSILQEYVQKNFKTVPT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEIS 196
           Y++    GPDH   F + V + 
Sbjct: 179 YELISEKGPDHMKEFEIQVVVG 200


>gi|125555283|gb|EAZ00889.1| hypothetical protein OsI_22916 [Oryza sativa Indica Group]
          Length = 276

 Score =  105 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 15/239 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58
           M     + +E  +GY F +++L+E+ALTH S  + Y+   +YERLE+LGD +L  ++S  
Sbjct: 34  MGPGEVAAVESLLGYEFRDKALVEQALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSRE 93

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQ 115
           +F  +   + G L+    + V  E  ++VA    L  F+R  +       +      S+ 
Sbjct: 94  VFLTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMY 153

Query: 116 ADVVESLI----AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
                 L+        +   +  A      + ++   +  +   D    L+         
Sbjct: 154 PIHSNGLLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGKHPVSE 213

Query: 172 TPEYKVTFRSG-----PDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVLKREG 224
             E+    R G      + D   TV V I G    +     K+  A+  AA   L +  
Sbjct: 214 LFEFCQKTRRGVKIVKDEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAKAALDKLK 272


>gi|218440872|ref|YP_002379201.1| ribonuclease III [Cyanothece sp. PCC 7424]
 gi|218173600|gb|ACK72333.1| Ribonuclease III [Cyanothece sp. PCC 7424]
          Length = 228

 Score =  105 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 65/221 (29%), Positives = 100/221 (45%), Gaps = 12/221 (5%)

Query: 18  ANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
            N+ L   ALTH S  + +   +E  ERLEFLGD +L  +    L+  +    E +LS  
Sbjct: 8   KNQQLWLCALTHRSYVNEHLEIKEHNERLEFLGDAVLAFVAGEFLYQRYPHLSEAQLSRL 67

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
              LV     ++ A +L +   +R+     KD      ++ +D  E++I A +LD GI+ 
Sbjct: 68  RARLVDETQLAKFAVQLGIGQLMRLGKGAIKDGGRENPALLSDTFEAIIGAYFLDAGIDA 127

Query: 135 AGTFVDKYWKQRALKSGKFRR---------DAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
              FV   ++  A      +          D K   Q+W  A F   PEY +   SGPDH
Sbjct: 128 VREFVRPLFQSVADILMVAQSEILTSEKLLDPKNRFQQWTLANFTQNPEYVIIEESGPDH 187

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
              FT  V++ G+    G    K+ A + AA   LK+ G++
Sbjct: 188 AKEFTAQVKVQGIVYGIGRGRRKQEATKTAAEAALKKIGLF 228


>gi|34764313|ref|ZP_00145147.1| Ribonuclease III [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|237741211|ref|ZP_04571692.1| ribonuclease III [Fusobacterium sp. 4_1_13]
 gi|27885913|gb|EAA23255.1| Ribonuclease III [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|229430743|gb|EEO40955.1| ribonuclease III [Fusobacterium sp. 4_1_13]
          Length = 234

 Score =  105 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 102/203 (50%), Gaps = 8/203 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M       LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++
Sbjct: 1   MK--NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ ++ +A EG ++     +VS    ++++R++ +  F+ +S            SI A
Sbjct: 59  EYLYKNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+++ A+Y+D  ++ A  F   + KQ      +     D K+ LQE+   +F   P 
Sbjct: 119 DSFEAILGAVYMDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISG 197
           Y++    GPDH   F + V +  
Sbjct: 179 YELIAERGPDHMKEFEIQVIVGN 201


>gi|238759682|ref|ZP_04620842.1| Ribonuclease 3 [Yersinia aldovae ATCC 35236]
 gi|238702110|gb|EEP94667.1| Ribonuclease 3 [Yersinia aldovae ATCC 35236]
          Length = 226

 Score =  105 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIHTIERLILAWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVVGTGSSRRK 210


>gi|193202651|ref|NP_001122460.1| Ortholog of Drosophila DRoSHa gene family member (drsh-1)
            [Caenorhabditis elegans]
 gi|159572246|emb|CAP19331.1| C. elegans protein F26E4.10b, confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 1083

 Score =  105 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 13/228 (5%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63
            +  LE+R+G  F N  LL KA T  +I ++   +   +RLE+LGD +L L++S  L+  F
Sbjct: 833  FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 892

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG +S+   SLVS +T + V  +L    F+  +     +        +AD+VE+ I
Sbjct: 893  PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAPYKTPE---LKLKDKADLVEAFI 949

Query: 124  AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV------TPEY 175
             ALY+D GIE    F+   +  R       +   DAK+ LQ+W  A           PEY
Sbjct: 950  GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRDPSSSEPDMPEY 1009

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +V    GP ++  F + V   G   A   + +   AE   A   L   
Sbjct: 1010 RVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANL 1057



 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 65/207 (31%), Gaps = 49/207 (23%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------------------------ 38
                  E+ I Y F +R ++E AL HSS    Y                          
Sbjct: 604 NFSLDVFEEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRRKYGAEDKR 663

Query: 39  -------------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
                                      ERLE+LGD ++ L++S  L+       EG L+ 
Sbjct: 664 EKKRVAGIMSLFNIMKGTSGGEPILHNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLAT 723

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              +LV     + +A+   +   ++ S        +      A+  E+++AA+YLDGG+ 
Sbjct: 724 YRTALVQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALANAFEAVMAAIYLDGGLA 783

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTE 160
                  K          +        
Sbjct: 784 PCDVIFSKAMYGHQPVLKEKWDHINEH 810


>gi|240275432|gb|EER38946.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H143]
          Length = 495

 Score =  105 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 84/251 (33%), Gaps = 34/251 (13%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
             +  R+GY F    LL  A TH+S   ++     Y+RLEFLGD +L ++    L++H+ 
Sbjct: 151 KQIGNRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYP 210

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102
                 L+    ++VS +    V  +L L   +   S+                      
Sbjct: 211 DRDPQWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESAD 270

Query: 103 --LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
                   S       D++E+ I A+++D                +         DA   
Sbjct: 271 SPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQYFEDMSVYDAFAN 330

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDH--------DPRFTVVVEISGLAPAQGMDCSKRAAE 212
                +    +T ++                  +PR    V +     AQG+  S R A+
Sbjct: 331 KHPTTYFHNRLTIDFGCANYCLKAGEVQMVDSTEPRIYAAVIVHDKFVAQGIASSVRYAK 390

Query: 213 QVAAAEVLKRE 223
             A+   L + 
Sbjct: 391 TKASEAALAKL 401


>gi|170591572|ref|XP_001900544.1| Type III restriction enzyme, res subunit family protein [Brugia
            malayi]
 gi|158592156|gb|EDP30758.1| Type III restriction enzyme, res subunit family protein [Brugia
            malayi]
          Length = 1856

 Score =  105 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 81/257 (31%), Gaps = 41/257 (15%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            ++S LE  IGY F +R+ L +A TH+S   +     Y+RLEFLGD +L  +I+  LF H 
Sbjct: 1589 QFSKLEDCIGYRFHDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQHS 1648

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                 G L+   ++LV+    + +A + +                  +        E  +
Sbjct: 1649 AHYSPGVLTDLRSALVNNTIFASLAVKYNFHKHFIAMCPRLH---HMIEKFVCLCAEKNL 1705

Query: 124  AALYLDGGIEVAGTFVDKYWKQRALKSGK-------------------------FRRDAK 158
            ++   +  + +  T  +    +                                +R    
Sbjct: 1706 SSANFNEEMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLNTVWRVFYN 1765

Query: 159  TELQEWAHAKFGVTPEYKVTFRSGPDHDPRF------------TVVVEISGLAPAQGMDC 206
               +                         RF             V V+I G     GM  
Sbjct: 1766 LMKETINECCSNPPRSPIRELLEMEPERARFSKLERILETGKVRVTVDIQGKCRFTGMGR 1825

Query: 207  SKRAAEQVAAAEVLKRE 223
            S R A+  AA   L+  
Sbjct: 1826 SYRIAKCTAAKRALRYL 1842



 Score = 39.9 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 23   LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
            L +ALT S+ S     + ERLE +GD  L   ++  LF+      EG+LS   +  VS  
Sbjct: 1340 LLQALTLSNASDGI--NLERLETVGDSFLKYAVTDYLFHTNPEQHEGKLSFARSKEVSNC 1397

Query: 83   TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
               ++ R+ +L S I  S     D             ++
Sbjct: 1398 NLYRLGRKHNLPSLIIGSKFDPNDGWLPPCYAPTSDFKA 1436


>gi|312069719|ref|XP_003137813.1| hypothetical protein LOAG_02227 [Loa loa]
 gi|307767024|gb|EFO26258.1| hypothetical protein LOAG_02227 [Loa loa]
          Length = 1928

 Score =  105 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 89/257 (34%), Gaps = 41/257 (15%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            ++S LE  IGY F +R+ L +A TH+S   +     Y+RLEFLGD +L  +I+  LF H 
Sbjct: 1661 QFSKLEDFIGYRFNDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQHS 1720

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------ 111
                 G L+   ++LV+    + +A + +              +                
Sbjct: 1721 SHYSPGVLTDLRSALVNNTIFASLAIKHNFHKHFIAMCPRLHHMIEKFVCLCTEKNLSSA 1780

Query: 112  -------------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146
                                          D+ ES+  A+YLD G  +   +   Y   +
Sbjct: 1781 NFNEEMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLDIVWRVFYNLMK 1840

Query: 147  ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                       ++ ++E            + +         +  V V+I G     GM  
Sbjct: 1841 ETIDECCSNPPRSPIRELLE---MEPERARFSKLERILETGKVRVTVDIQGKCRFTGMGR 1897

Query: 207  SKRAAEQVAAAEVLKRE 223
            S R A+  AA   L+  
Sbjct: 1898 SYRIAKCTAAKRALRYL 1914



 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 8/112 (7%)

Query: 16   AFAN------RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
             F +         L +ALT S+ S     + ERLE +GD  L   ++  LF+      EG
Sbjct: 1399 TFNDHPDGVSPCTLLQALTLSNASDGI--NLERLETVGDSFLKYAVTDYLFHTNPEQHEG 1456

Query: 70   ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +LS   +  VS     ++ R+ +L S I  S     D             ++
Sbjct: 1457 KLSFARSKEVSNCNLYRLGRKHNLPSLIIGSKFDPNDGWLPPCYAPTSDFKA 1508


>gi|237740802|ref|ZP_04571283.1| ribonuclease III [Fusobacterium sp. 2_1_31]
 gi|229422819|gb|EEO37866.1| ribonuclease III [Fusobacterium sp. 2_1_31]
          Length = 234

 Score =  105 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 8/203 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M       LE ++ Y F NR+LL+ AL H S+ +  +E    + ERLE LGD +L L+++
Sbjct: 1   MK--NLLDLEHKLNYYFNNRNLLKTALLHKSLGNEKKEYKNQNNERLELLGDAVLDLIVA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ ++ SA EG ++     +VS    ++++R++DL  F+ +S            SI A
Sbjct: 59  EYLYRNYKSASEGTIAKLKAMIVSEPILAKISRQIDLGKFLMLSKGEILSGGRNRESILA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           D  E+++ A+Y+D  +E A +F           ++  +   D K+ LQE+    F   P 
Sbjct: 119 DAFEAVLGAVYMDSNLEEARSFALGHIEQYITHIEEDEDILDFKSILQEYVQKNFKTVPT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISG 197
           Y++    GPDH   F + V +  
Sbjct: 179 YELISEKGPDHMKEFEIQVVVGN 201


>gi|298492780|ref|YP_003722957.1| ribonuclease III ['Nostoc azollae' 0708]
 gi|298234698|gb|ADI65834.1| ribonuclease III ['Nostoc azollae' 0708]
          Length = 227

 Score =  105 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 76/198 (38%), Gaps = 8/198 (4%)

Query: 16  AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            F    LL +ALTH S  +      E  ERLEFLGD IL  +    L+  +    E EL+
Sbjct: 6   TFNREKLLCQALTHRSYVNENPGEGEHNERLEFLGDAILNFISGQYLYRRYPQKGEDELT 65

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
            R ++LV  +  ++ A E+ L   +R+     +D      ++ +   E++I A YLD   
Sbjct: 66  RRRSALVEEKQLAKFAIEVGLDFRMRLGKGAIRDGGFQNPNLLSSTFEAVIGAYYLDNNC 125

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV-----TPEYKVTFRSGPDHDP 187
           EV            ++        +  + +               P+Y      GP H P
Sbjct: 126 EVEPIRTIIEPLFDSVSEDIIEPRSNVDSKNRFQEWVQKEIGANPPKYVTEQIGGPSHAP 185

Query: 188 RFTVVVEISGLAPAQGMD 205
            F   V + G    +   
Sbjct: 186 EFIARVLVDGKEYGEAKG 203


>gi|317504409|ref|ZP_07962390.1| ribonuclease III [Prevotella salivae DSM 15606]
 gi|315664455|gb|EFV04141.1| ribonuclease III [Prevotella salivae DSM 15606]
          Length = 364

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           YS+L   +G+   + S  + AL H SI     +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YSSLYTILGFYPRDISYYKLALMHKSIMKRNAKGKPVNNERLEFLGDAILDAIVGHIVYQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  ET +++A EL +   I  +            +    +V +
Sbjct: 80  HFPGKREGFLTNTRSKLVQRETLNKLANELGINQLILSNGRSSSHNSYMGGNAFEALVGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +      D  +      +          + K     K++L EW+           +    
Sbjct: 140 VYLDRGYDACMNFMKNRILAQMINIDKVAYKEVNF-KSKLIEWSQKNRVRLTFDILEQSK 198

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +  P F   V I G+    G+  SK+ ++Q+A+   L+R 
Sbjct: 199 DNNGSPVFNYKVVIEGIDGCNGVGYSKKESQQLASKLTLERL 240


>gi|297539125|ref|YP_003674894.1| ribonuclease III [Methylotenera sp. 301]
 gi|297258472|gb|ADI30317.1| ribonuclease III [Methylotenera sp. 301]
          Length = 231

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 101/207 (48%), Gaps = 6/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L KR+ Y F +++LL +ALTH S +    ++ ERLE+LGD  L  +I+  L+  F S 
Sbjct: 4   QDLSKRLSYKFVDKNLLTQALTHRSYA---SQNNERLEYLGDGALNFIIANQLYQRFPSL 60

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS     LV   T S++A  LD+   +++     K       SI AD +E++I A+
Sbjct: 61  AEGDLSRLRAQLVKEATISEIAFSLDIGDALKLGEGELKSAGWRRPSILADALEAIIGAV 120

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLDGG   A   V + + ++   +      +D K+ LQE    K    PEY V   SG  
Sbjct: 121 YLDGGFFAAEALVLELYIEKLSTIDPKIIDKDPKSLLQEMLQGKKIAVPEYAVVHTSGEA 180

Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRA 210
           H   F V   I  L     G   S+R 
Sbjct: 181 HAQIFIVECFIQKLDIRTVGEGTSRRI 207


>gi|256846347|ref|ZP_05551804.1| ribonuclease III [Fusobacterium sp. 3_1_36A2]
 gi|256718116|gb|EEU31672.1| ribonuclease III [Fusobacterium sp. 3_1_36A2]
          Length = 234

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 102/203 (50%), Gaps = 8/203 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M       LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++
Sbjct: 1   MK--NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ ++ +A EG ++     +VS    ++++R++ +  F+ +S            SI A
Sbjct: 59  EYLYKNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+++ A+Y+D  ++ A  F   + KQ      +     D K+ LQE+   +F   P 
Sbjct: 119 DSFEAILGAVYMDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISG 197
           Y++    GPDH   F + V +  
Sbjct: 179 YELIAERGPDHMKEFEIQVIVGN 201


>gi|317150438|ref|XP_001824024.2| dicer-like protein 1 [Aspergillus oryzae RIB40]
 gi|158706453|sp|Q2U6C4|DCL1_ASPOR RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1523

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 88/254 (34%), Gaps = 37/254 (14%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65
             +E+++GY F    LL  A TH S   ++ +   Y+RLEFLGD +L ++    LF  +  
Sbjct: 1243 KVEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPD 1302

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---------------------- 103
                 L+    ++VS +    +A +L L + +R  S+                       
Sbjct: 1303 KDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENESQGA 1362

Query: 104  --RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
                 V         D+VE+ + A ++D   +            ++        D     
Sbjct: 1363 VDYWLVTKDPPKCLPDMVEAYLGAAFVDSDFQFRVVEDFFQRHVKSYFHDMTIYDTFANK 1422

Query: 162  QEWAHAKFGVTPEYKVTFRSGPDHDPRFT--------VVVEISGLAPAQGMDCSKRAAEQ 213
                  +  +T EY  T       +              V +  +  A+G   S R A+ 
Sbjct: 1423 HPTTFLQNRLTNEYGCTNYCLKAGEIPVVDGGTVSVLAAVIVHEVVIAEGTASSGRYAKV 1482

Query: 214  VAAAEV---LKREG 224
             A+ +    L+  G
Sbjct: 1483 KASEKALSVLENMG 1496



 Score = 44.9 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 38/138 (27%), Gaps = 24/138 (17%)

Query: 6    YSTLE--KRIGYAFANRSLLEKALT--------HS----SISHSYQESYERLEFLGDRIL 51
               LE  K +  +        +A T        H      +     ++YERLEFLGD  L
Sbjct: 1030 LIALEGCKTLDLSVK-PEYALEAFTKDSDNTEEHRVQQIHVQRGMGKNYERLEFLGDCFL 1088

Query: 52   GLLISTLLFNHFDSAKEGELSVRFNSLVSAET---------CSQVARELDLASFIRVSSD 102
             +  S  LF       E +  V    L+  +            Q  R    +        
Sbjct: 1089 KMATSISLFVQNPDDDEFDFHVNRMCLICNKNLFNTALKKELYQYTRSRGFSRHTWYPDG 1148

Query: 103  LRKDVCSFMTSIQADVVE 120
            L            +   +
Sbjct: 1149 LTLLHGRDHRKKISAESK 1166


>gi|91775216|ref|YP_544972.1| ribonuclease III [Methylobacillus flagellatus KT]
 gi|91775360|ref|YP_545116.1| ribonuclease III [Methylobacillus flagellatus KT]
 gi|91709203|gb|ABE49131.1| RNAse III [Methylobacillus flagellatus KT]
 gi|91709347|gb|ABE49275.1| RNAse III [Methylobacillus flagellatus KT]
          Length = 248

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 102/206 (49%), Gaps = 6/206 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           ++L +++ Y F ++ LL  ALTH S S     + ERLEFLGD +L  L++  LF  F   
Sbjct: 26  NSLVRQLAYEFKDKGLLTLALTHRSYS---GSNNERLEFLGDGVLNFLVAHQLFLRFPKL 82

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS     LV  +T S++A EL +  F+R+     K       S+ AD +E++I A+
Sbjct: 83  PEGDLSRLRAQLVKEQTLSEIATELSVGEFLRLGEGELKSGGWRRPSVLADAMEAIIGAV 142

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LDGG   A   V + +  R          +DAK+ LQE+   +    PEY V    G  
Sbjct: 143 FLDGGYPAAEALVKRLFLPRMEGIDPKAIGKDAKSLLQEFLQGRKIDLPEYNVLATEGEA 202

Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKR 209
           H   F V   I+      +G   S+R
Sbjct: 203 HCQTFRVSCHITKFQITTEGKGSSRR 228


>gi|222111791|ref|YP_002554055.1| ribonuclease iii [Acidovorax ebreus TPSY]
 gi|221731235|gb|ACM34055.1| ribonuclease III [Acidovorax ebreus TPSY]
          Length = 228

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 73/208 (35%), Positives = 109/208 (52%), Gaps = 6/208 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M     STL++R+ + F++ SLL++ALTH S S    +  ERLEFLGD +L L +S+LLF
Sbjct: 1   MQPASLSTLQQRLQHQFSDASLLQRALTHRSFS---ADHNERLEFLGDSVLSLAVSSLLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EGELS     LV  ++  Q+A  L L   +R+     K       SI AD +E
Sbjct: 58  RRMRDLPEGELSRVRALLVKQDSLHQIAVRLQLPPVLRLGEGEAKSGGKLRPSILADALE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G E A   V + ++  + + +  +  +DAKT LQEW   +    P+Y+V 
Sbjct: 118 AIIGAVYLDAGYECAEQLVHRLFEGVELSPRLQEAAKDAKTALQEWLQGRKMNLPQYRVV 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMD 205
             +G  H+  F V  E+       +G  
Sbjct: 178 STTGAAHNQVFHVECEVVELQRVERGSG 205


>gi|121595570|ref|YP_987466.1| ribonuclease III [Acidovorax sp. JS42]
 gi|120607650|gb|ABM43390.1| RNAse III [Acidovorax sp. JS42]
          Length = 228

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 73/208 (35%), Positives = 109/208 (52%), Gaps = 6/208 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M     STL++R+ + F++ SLL++ALTH S S    +  ERLEFLGD +L L +S+LLF
Sbjct: 1   MQPASLSTLQQRLQHQFSDASLLQRALTHRSFS---ADHNERLEFLGDSVLSLAVSSLLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EGELS     LV  ++  Q+A  L L   +R+     K       SI AD +E
Sbjct: 58  RRMRDLPEGELSRVRALLVKQDSLHQIAVRLQLPPVLRLGEGEAKSGGKLRPSILADALE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G E A   V + ++  + + +  +  +DAKT LQEW   +    P+Y+V 
Sbjct: 118 AIIGAVYLDAGYECAEQLVHRLFEGVELSPRLQEAAKDAKTALQEWLQGRKMNLPQYRVV 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMD 205
             +G  H+  F V  E+       +G  
Sbjct: 178 STTGAAHNQVFHVECEVVELQRVERGSG 205


>gi|17506883|ref|NP_492599.1| Ortholog of Drosophila DRoSHa gene family member (drsh-1)
            [Caenorhabditis elegans]
 gi|20141625|sp|O01326|RNC_CAEEL RecName: Full=Ribonuclease 3; AltName: Full=Protein drosha; AltName:
            Full=Ribonuclease III; Short=RNase III
 gi|15718161|emb|CAB03006.3| C. elegans protein F26E4.10a, confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 1086

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 13/228 (5%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63
            +  LE+R+G  F N  LL KA T  +I ++   +   +RLE+LGD +L L++S  L+  F
Sbjct: 833  FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 892

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG +S+   SLVS +T + V  +L    F+  +     +        +AD+VE+ I
Sbjct: 893  PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAPYKTPE---LKLKDKADLVEAFI 949

Query: 124  AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV------TPEY 175
             ALY+D GIE    F+   +  R       +   DAK+ LQ+W  A           PEY
Sbjct: 950  GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRDPSSSEPDMPEY 1009

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +V    GP ++  F + V   G   A   + +   AE   A   L   
Sbjct: 1010 RVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANL 1057



 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 65/207 (31%), Gaps = 49/207 (23%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------------------------ 38
                  E+ I Y F +R ++E AL HSS    Y                          
Sbjct: 604 NFSLDVFEEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRRKYGAEDKR 663

Query: 39  -------------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
                                      ERLE+LGD ++ L++S  L+       EG L+ 
Sbjct: 664 EKKRVAGIMSLFNIMKGTSGGEPILHNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLAT 723

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              +LV     + +A+   +   ++ S        +      A+  E+++AA+YLDGG+ 
Sbjct: 724 YRTALVQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALANAFEAVMAAIYLDGGLA 783

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTE 160
                  K          +        
Sbjct: 784 PCDVIFSKAMYGHQPVLKEKWDHINEH 810


>gi|281421655|ref|ZP_06252654.1| ribonuclease 3 [Prevotella copri DSM 18205]
 gi|281404289|gb|EFB34969.1| ribonuclease 3 [Prevotella copri DSM 18205]
          Length = 360

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L + +G+   + S  + AL H SI H   +    + ERLEFLGD +L  ++  +++ 
Sbjct: 20  YLSLYEILGFYPHDISYYKMALLHKSIMHRNSKGKPVNNERLEFLGDAVLDAVVGDIVYQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  +T +++A+E+ +   I  +            +    +V +
Sbjct: 80  HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGINQLILSNGHSSSHNSYMGGNAFEALVGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +      D  +      +          + K     K++L EW+           +  + 
Sbjct: 140 IYLDRGYDACMYFMQKRILAQMINIDKVAYKEVNF-KSKLIEWSQKNRVKLDFVMLDQQK 198

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +  P FT  V + G+    G   SK+ ++QVA+   L++ 
Sbjct: 199 DKNGSPIFTYQVVLEGVDGGVGKGYSKKESQQVASKTSLEKL 240


>gi|115468004|ref|NP_001057601.1| Os06g0358800 [Oryza sativa Japonica Group]
 gi|75254269|sp|Q69KJ0|RTL3_ORYSJ RecName: Full=Ribonuclease 3-like protein 3; AltName:
           Full=Ribonuclease III-like protein 3; Short=RNase
           III-like protein 3
 gi|51091751|dbj|BAD36550.1| CAF protein-like [Oryza sativa Japonica Group]
 gi|113595641|dbj|BAF19515.1| Os06g0358800 [Oryza sativa Japonica Group]
 gi|125597181|gb|EAZ36961.1| hypothetical protein OsJ_21299 [Oryza sativa Japonica Group]
          Length = 299

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 15/239 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58
           M     + +E  +GY F +++L+E+ALTH S  + Y+   +YERLE+LGD +L  ++S  
Sbjct: 34  MGPGEVAAVESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSRE 93

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQ 115
           +F  +   + G L+    + V  E  ++VA    L  F+R  +       +      S+ 
Sbjct: 94  VFLTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMY 153

Query: 116 ADVVESLI----AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
                 L+        +   +  A      + ++   +  +   D    L+         
Sbjct: 154 PIHSNGLLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGKHPVSE 213

Query: 172 TPEYKVTFRSG-----PDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVLKREG 224
             E+    R G      + D   TV V I G    +     K+  A+  AA   L +  
Sbjct: 214 LFEFCQKTRRGVKIVKDEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAKAALDKLK 272


>gi|297812215|ref|XP_002873991.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319828|gb|EFH50250.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1693

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 29/243 (11%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
                LE ++ Y F ++ LL +A  H S +      Y+RLEFLGD +L  L+++  F  F 
Sbjct: 1283 NLEALENQLDYNFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFP 1342

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD------------------ 106
              K G+L+   +  V+ +  + VA    L  F+   S    +                  
Sbjct: 1343 KLKPGQLTDLRSLSVNNKALANVAVSFSLKRFLFCESVYLHEAIEDYTNFRAASPLASGP 1402

Query: 107  -VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEW 164
                    +  D+VES + AL+LD G  +   +     +          +     EL E 
Sbjct: 1403 SEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIEL 1462

Query: 165  AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMDCSKRAAEQVAAAEVLK 221
              +              G      F+V ++++             +KR + + AA  ++ 
Sbjct: 1463 CQSYKWDREISATKKDGG------FSVELKVTKKGCCLTVSATGRNKRESTKKAAQLMIT 1516

Query: 222  REG 224
               
Sbjct: 1517 SLK 1519



 Score = 39.1 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 24   EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
             +ALT          S ERLE LGD  L   +S  LF H D   EGEL+ R +  V+   
Sbjct: 1097 LEALTTEKCHERL--SLERLEVLGDAFLKFAVSRHLFLHHDRLDEGELTRRRSKAVNNSN 1154

Query: 84   CSQVARELDLASFIRVS 100
              ++A + +L  +IR  
Sbjct: 1155 LCRLAIKRNLQVYIRDQ 1171


>gi|83652594|gb|ABC36657.1| ribonuclease III, putative [Burkholderia thailandensis E264]
          Length = 487

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 6/206 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           ++  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  
Sbjct: 18  SMPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQR 74

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 75  FSKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 134

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +             +DAKT LQE+        P Y V   
Sbjct: 135 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 194

Query: 181 SGPDHDPRFTVVVEISGLAP-AQGMD 205
            G  H+ +F V   +  L     G  
Sbjct: 195 HGAAHNQQFEVECTVPKLDIKVSGSG 220


>gi|256397117|ref|YP_003118681.1| ribonuclease III [Catenulispora acidiphila DSM 44928]
 gi|256363343|gb|ACU76840.1| ribonuclease III [Catenulispora acidiphila DSM 44928]
          Length = 276

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 104/234 (44%), Gaps = 21/234 (8%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
             L  R+G    +  L+++ALTH S ++      + ERLEFLGD +LGL+++  L+    
Sbjct: 19  EDLIARLGL-PVDARLIDRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYTTHS 77

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+   +++V+++  ++VAR L L  ++++             SI AD +E+LI 
Sbjct: 78  ELPEGQLAKLRSAVVNSKALAEVARGLRLGDYVKLGRGEETTGGRDKASILADTLEALIG 137

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ++YLD GIEVA   V + +      S             +   A  G+         +GP
Sbjct: 138 SVYLDHGIEVAFDLVRRLFGPLIATSATLGAGLDWKTSLQELTAVAGIGVPDYRVTETGP 197

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR-----------------AAEQVAAAEVL 220
           DHD  F     + G     G   SK+                  AE +AA  VL
Sbjct: 198 DHDKFFEADACVGGTVYGHGSGRSKKEAEQQAAEEAWRTIRETHAEALAAKGVL 251


>gi|332005448|gb|AED92831.1| dicer-like protein 4 [Arabidopsis thaliana]
          Length = 1688

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 88/243 (36%), Gaps = 29/243 (11%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               TLE ++ Y F ++ LL +A  H S +      Y+RLEFLGD +L  L+++  F  F 
Sbjct: 1277 NLETLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFP 1336

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD------------------ 106
              K G+L+   +  V+ E  + VA    L  F+   S    +                  
Sbjct: 1337 KLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQ 1396

Query: 107  -VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEW 164
                    +  D+VES + AL+LD G  +   +     +          +     EL E 
Sbjct: 1397 SEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIEL 1456

Query: 165  AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI--SGLAPA-QGMDCSKRAAEQVAAAEVLK 221
              +                  D  FTV +++  +G          +KR   + AA  ++ 
Sbjct: 1457 CQSYKWDREISATKK------DGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMIT 1510

Query: 222  REG 224
               
Sbjct: 1511 NLK 1513



 Score = 39.1 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 24   EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
             +ALT          S ERLE LGD  L   +S  LF H DS  EGEL+ R +++V+   
Sbjct: 1090 LEALTTEKCHERL--SLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSN 1147

Query: 84   CSQVARELDLASFIRVS 100
              ++A + +L  +IR  
Sbjct: 1148 LCRLAIKKNLQVYIRDQ 1164


>gi|261878907|ref|ZP_06005334.1| ribonuclease III [Prevotella bergensis DSM 17361]
 gi|270334489|gb|EFA45275.1| ribonuclease III [Prevotella bergensis DSM 17361]
          Length = 366

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63
           +L + IG+   + S  + AL H S++   +     + ERLEFLGD IL   +  +++ HF
Sbjct: 28  SLYRIIGFYPHDISHYKMALLHKSVTQHNKMGKRVNNERLEFLGDAILDAAVGDIVYRHF 87

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              KEG L+   + LV  +T +++A+EL +   I  +            +    +V ++ 
Sbjct: 88  PGKKEGFLTNTRSKLVQRDTLNKLAKELGINDLILSNGCSSSHNSYMGGNAFEALVGAIY 147

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
                D  +      +          + K     K++L EW+           +      
Sbjct: 148 LDRGYDACMHFLKKRILAQMINIDKMAYKEVNF-KSKLIEWSQKNHIKMDFELLKEDKDK 206

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  P F+  V + G+A  +G   SK+ ++Q A  E LKR 
Sbjct: 207 NGSPTFSYRVMLEGIAGCEGTGFSKKESQQKACKETLKRL 246


>gi|145358264|ref|NP_197532.3| DCL4 (DICER-LIKE 4); RNA binding / protein binding / ribonuclease III
            [Arabidopsis thaliana]
 gi|322510021|sp|P84634|DCL4_ARATH RecName: Full=Dicer-like protein 4
 gi|73672051|gb|AAZ80387.1| dicer-like 4 [Arabidopsis thaliana]
 gi|332005447|gb|AED92830.1| dicer-like protein 4 [Arabidopsis thaliana]
          Length = 1702

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 88/243 (36%), Gaps = 29/243 (11%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               TLE ++ Y F ++ LL +A  H S +      Y+RLEFLGD +L  L+++  F  F 
Sbjct: 1291 NLETLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFP 1350

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD------------------ 106
              K G+L+   +  V+ E  + VA    L  F+   S    +                  
Sbjct: 1351 KLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQ 1410

Query: 107  -VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEW 164
                    +  D+VES + AL+LD G  +   +     +          +     EL E 
Sbjct: 1411 SEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIEL 1470

Query: 165  AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI--SGLAPA-QGMDCSKRAAEQVAAAEVLK 221
              +                  D  FTV +++  +G          +KR   + AA  ++ 
Sbjct: 1471 CQSYKWDREISATKK------DGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMIT 1524

Query: 222  REG 224
               
Sbjct: 1525 NLK 1527



 Score = 39.1 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 24   EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
             +ALT          S ERLE LGD  L   +S  LF H DS  EGEL+ R +++V+   
Sbjct: 1104 LEALTTEKCHERL--SLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSN 1161

Query: 84   CSQVARELDLASFIRVS 100
              ++A + +L  +IR  
Sbjct: 1162 LCRLAIKKNLQVYIRDQ 1178


>gi|253997000|ref|YP_003049064.1| ribonuclease III [Methylotenera mobilis JLW8]
 gi|253983679|gb|ACT48537.1| ribonuclease III [Methylotenera mobilis JLW8]
          Length = 230

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 101/213 (47%), Gaps = 9/213 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS      L +R+ + F N SLL +ALTH S +    ++ ERLEFLGD  L  +I+  L+
Sbjct: 1   MSK---QELLRRLSHQFVNESLLTQALTHRSYA---GQNNERLEFLGDGALNFIIAHQLY 54

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+LS     LV   T S++A  L+L   + +     K       SI AD +E
Sbjct: 55  QRFPKLAEGDLSRLRAQLVKEATLSEIALSLNLGDALLLGEGELKSAGWRRPSILADALE 114

Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G E A TFV      K   +      +D K+ LQE   ++    PEY V 
Sbjct: 115 AIIGAVYLDSGFEAAQTFVLGLYAGKLETIDPKVIDKDPKSLLQELLQSRKIAVPEYTVI 174

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRA 210
             SG  H+ +F V   +        G   S+R 
Sbjct: 175 HTSGEAHEQKFVVECLVEKHQIRTVGEGRSRRI 207


>gi|307150264|ref|YP_003885648.1| ribonuclease III [Cyanothece sp. PCC 7822]
 gi|306980492|gb|ADN12373.1| ribonuclease III [Cyanothece sp. PCC 7822]
          Length = 228

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 103/222 (46%), Gaps = 12/222 (5%)

Query: 16  AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            F N+ L   ALTH S  + +    E  ERLEFLGD IL  +    L+  +    E +L+
Sbjct: 6   TFKNQQLWLCALTHRSYINEHSGINEHNERLEFLGDAILAFVAGEFLYQRYPHLSEAQLT 65

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     ++ A +L +   +R+     KD      ++ +D  E++I A YLD G+
Sbjct: 66  RLRAKLVDETQLARFAVQLGIGELMRLGKGAIKDGGRENPALLSDTFEAIIGAYYLDAGV 125

Query: 133 EVAGTFVDKYWKQRALKSG---------KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +    FV   ++  A             K   DAK   Q+WA A+F   PEY +   SGP
Sbjct: 126 DAVRNFVHPLFQSVADILMVSQSEVATTKNLLDAKNRFQQWALAEFSQNPEYIIIEESGP 185

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           DH   FT  V++ G+    G    K+ A + AA E LK+ G+
Sbjct: 186 DHAKEFTAQVKVQGIVYGVGRGRRKQEATKAAAEEALKKVGL 227


>gi|22125197|ref|NP_668620.1| ribonuclease III [Yersinia pestis KIM 10]
 gi|45442304|ref|NP_993843.1| ribonuclease III [Yersinia pestis biovar Microtus str. 91001]
 gi|51597206|ref|YP_071397.1| ribonuclease III [Yersinia pseudotuberculosis IP 32953]
 gi|108808446|ref|YP_652362.1| ribonuclease III [Yersinia pestis Antiqua]
 gi|108811369|ref|YP_647136.1| ribonuclease III [Yersinia pestis Nepal516]
 gi|145598837|ref|YP_001162913.1| ribonuclease III [Yersinia pestis Pestoides F]
 gi|149365390|ref|ZP_01887425.1| ribonuclease III [Yersinia pestis CA88-4125]
 gi|153949383|ref|YP_001400117.1| ribonuclease III [Yersinia pseudotuberculosis IP 31758]
 gi|162419239|ref|YP_001607935.1| ribonuclease III [Yersinia pestis Angola]
 gi|165925157|ref|ZP_02220989.1| ribonuclease III [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937011|ref|ZP_02225576.1| ribonuclease III [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008358|ref|ZP_02229256.1| ribonuclease III [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212532|ref|ZP_02238567.1| ribonuclease III [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167399049|ref|ZP_02304573.1| ribonuclease III [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421411|ref|ZP_02313164.1| ribonuclease III [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167423187|ref|ZP_02314940.1| ribonuclease III [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|218929790|ref|YP_002347665.1| ribonuclease III [Yersinia pestis CO92]
 gi|229838281|ref|ZP_04458440.1| RNase III [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895523|ref|ZP_04510694.1| RNase III [Yersinia pestis Pestoides A]
 gi|229898845|ref|ZP_04513990.1| RNase III [Yersinia pestis biovar Orientalis str. India 195]
 gi|229901619|ref|ZP_04516741.1| RNase III [Yersinia pestis Nepal516]
 gi|270489808|ref|ZP_06206882.1| ribonuclease III [Yersinia pestis KIM D27]
 gi|284988625|ref|YP_001719940.2| ribonuclease III [Yersinia pseudotuberculosis YPIII]
 gi|284988628|ref|YP_001873415.2| ribonuclease III [Yersinia pseudotuberculosis PB1/+]
 gi|22654064|sp|Q8ZD72|RNC_YERPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|73917588|sp|Q667V1|RNC_YERPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122980240|sp|Q1CKE4|RNC_YERPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|123372250|sp|Q1C555|RNC_YERPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043377|sp|A7FFT9|RNC_YERP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043378|sp|A4TKX8|RNC_YERPP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238687295|sp|A9R402|RNC_YERPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|21958062|gb|AAM84871.1|AE013732_3 RNase III, ds RNA [Yersinia pestis KIM 10]
 gi|45437168|gb|AAS62720.1| ribonuclease III [Yersinia pestis biovar Microtus str. 91001]
 gi|51590488|emb|CAH22128.1| ribonuclease III [Yersinia pseudotuberculosis IP 32953]
 gi|108775017|gb|ABG17536.1| RNAse III [Yersinia pestis Nepal516]
 gi|108780359|gb|ABG14417.1| RNAse III [Yersinia pestis Antiqua]
 gi|115348401|emb|CAL21337.1| ribonuclease III [Yersinia pestis CO92]
 gi|145210533|gb|ABP39940.1| RNAse III [Yersinia pestis Pestoides F]
 gi|149291803|gb|EDM41877.1| ribonuclease III [Yersinia pestis CA88-4125]
 gi|152960878|gb|ABS48339.1| ribonuclease III [Yersinia pseudotuberculosis IP 31758]
 gi|162352054|gb|ABX86002.1| ribonuclease III [Yersinia pestis Angola]
 gi|165914874|gb|EDR33486.1| ribonuclease III [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922764|gb|EDR39915.1| ribonuclease III [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992740|gb|EDR45041.1| ribonuclease III [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206463|gb|EDR50943.1| ribonuclease III [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960900|gb|EDR56921.1| ribonuclease III [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167051553|gb|EDR62961.1| ribonuclease III [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057357|gb|EDR67103.1| ribonuclease III [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229681548|gb|EEO77642.1| RNase III [Yersinia pestis Nepal516]
 gi|229688393|gb|EEO80464.1| RNase III [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694647|gb|EEO84694.1| RNase III [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701329|gb|EEO89357.1| RNase III [Yersinia pestis Pestoides A]
 gi|270338312|gb|EFA49089.1| ribonuclease III [Yersinia pestis KIM D27]
 gi|320016075|gb|ADV99646.1| RNase III [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 226

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      + +++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIHTIERLILEWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRK 210


>gi|296328081|ref|ZP_06870615.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296154857|gb|EFG95640.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 234

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 101/203 (49%), Gaps = 8/203 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M       LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++
Sbjct: 1   MK--NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ ++ +A EG ++     +VS    ++++R++ +  F+ +S            SI A
Sbjct: 59  EYLYKNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILA 118

Query: 117 DVVESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           D  E+++ A+Y+D  ++ A  F           ++  +   D K+ LQE+   +F   P 
Sbjct: 119 DSFEAILGAVYIDSNLDEARVFALSHIKQYIDHIEENEDILDFKSILQEYVQKEFKTVPT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISG 197
           Y++    GPDH   F + V +  
Sbjct: 179 YELVAERGPDHMKEFEIQVIVGN 201


>gi|17552834|ref|NP_498761.1| DiCer Related family member (dcr-1) [Caenorhabditis elegans]
 gi|21431882|sp|P34529|DCR1_CAEEL RecName: Full=Endoribonuclease dcr-1
 gi|15145374|gb|AAA28101.2| Dicer related protein 1, partially confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 1845

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 80/255 (31%), Gaps = 38/255 (14%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            +++ LE++IGY F  R+ L +A TH+S  ++     Y+RLEFLGD +L  +I+  LF   
Sbjct: 1577 QFTQLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDS 1636

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD------ 117
                 G L+   ++LV+    + +A + +              +      + ++      
Sbjct: 1637 RQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSERNFDTN 1696

Query: 118  -----------------------------VVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
                                          +   +A            T     +     
Sbjct: 1697 FNAEMYMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMRG 1756

Query: 149  KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                   +                  +    R       R TV V ++ +    GM  + 
Sbjct: 1757 TIELCCANPPRSPIRELMEFEQSKVRFSKMERILESGKVRVTVEV-VNNMRF-TGMGRNY 1814

Query: 209  RAAEQVAAAEVLKRE 223
            R A+  AA   LK  
Sbjct: 1815 RIAKATAAKRALKYL 1829



 Score = 39.1 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 2/102 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
              LL  ALT S+ +     S ER E +GD  L    +  L++      EG+LS   +  V
Sbjct: 1329 PCLLLTALTTSNAADGM--SLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEV 1386

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            S     ++ ++L +   I  +     D       I     ++
Sbjct: 1387 SNCNLYRLGKKLGIPQLIVANKFDAHDSWLPPCYIPTCDFKA 1428


>gi|159036823|ref|YP_001536076.1| ribonuclease III [Salinispora arenicola CNS-205]
 gi|157915658|gb|ABV97085.1| Ribonuclease III [Salinispora arenicola CNS-205]
          Length = 252

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 6/198 (3%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LLE+ALTH S ++      + ERLEFLGD +LG++I+T LF++     EG+L+    
Sbjct: 23  DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDLPEGQLAKLRA 82

Query: 77  SLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           S+V+    ++VAR L       ++ +             SI AD +E+L+ A+YL  G++
Sbjct: 83  SVVNMRALAEVARALGPTGLGPYLLLGKGEETTGGRDKASILADTLEALLGAIYLQCGLD 142

Query: 134 VAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
            A T + + +    A  +G+          +   A  G+         +GPDH   FT  
Sbjct: 143 TAATVIHRLFDPLMADSAGRGAALDWKTSLQELTAAQGLGVPEYRIEGTGPDHLKTFTAW 202

Query: 193 VEISGLAPAQGMDCSKRA 210
           V ++G         SK+ 
Sbjct: 203 VVVAGQRYGGAEGRSKKE 220


>gi|307703518|ref|ZP_07640460.1| ribonuclease III [Streptococcus oralis ATCC 35037]
 gi|307622925|gb|EFO01920.1| ribonuclease III [Streptococcus oralis ATCC 35037]
          Length = 190

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 1/180 (0%)

Query: 44  EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
            FLGD +L LLIS  L+  +    EG+LS     +V  E+ +  AR+     FI++    
Sbjct: 5   NFLGDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGE 64

Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQ 162
            K       +I  D  E+ + AL LD  +     F+ +    +      +  +D KT LQ
Sbjct: 65  EKSGGRNRDTILGDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQ 124

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E       V   Y+VT  +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 125 ELLQVNGDVDIRYQVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 184


>gi|299142079|ref|ZP_07035213.1| ribonuclease 3 [Prevotella oris C735]
 gi|298576541|gb|EFI48413.1| ribonuclease 3 [Prevotella oris C735]
          Length = 363

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           YS+L   +G+   N S  + AL H SI     +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YSSLYAILGFYPRNISYYKLALMHKSIMRRNAKGKPVNNERLEFLGDAILDAIVGDIVYQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  +T +++A EL ++  I  +            +    +V +
Sbjct: 80  HFPGKREGFLTNTRSKLVQRDTLNKLANELGISKLILSNGRSSSHNSYMGGNAFEALVGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +      D  +      +          + K     K++L EW+           +    
Sbjct: 140 VYLDRGYDACMNFMQHRILTQMINIDKVAYKEVNF-KSKLIEWSQKNRVKLDFEILEQGK 198

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +  P F   V I G+    G+  SK+ ++Q+A    L++ 
Sbjct: 199 DKNGSPIFNYKVVIEGIDGCDGVGYSKKESQQLACKLTLEQL 240


>gi|123441363|ref|YP_001005350.1| ribonuclease III [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|189043376|sp|A1JKK3|RNC_YERE8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122088324|emb|CAL11115.1| ribonuclease III [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 226

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 109/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIHTIERLILAWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRK 210


>gi|332162691|ref|YP_004299268.1| ribonuclease III [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|33332418|gb|AAQ11416.1| ribonuclease III [Yersinia enterocolitica]
 gi|318606796|emb|CBY28294.1| ribonuclease III [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325666921|gb|ADZ43565.1| ribonuclease III [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 226

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 109/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQDLLLQALTHRSAS---SKHNERLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIHTIERLILAWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRK 210


>gi|238762797|ref|ZP_04623766.1| Ribonuclease 3 [Yersinia kristensenii ATCC 33638]
 gi|238699102|gb|EEP91850.1| Ribonuclease 3 [Yersinia kristensenii ATCC 33638]
          Length = 226

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I   G  +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIHTVGRLILDWYRSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRK 210


>gi|302344776|ref|YP_003813129.1| ribonuclease III [Prevotella melaninogenica ATCC 25845]
 gi|302149813|gb|ADK96075.1| ribonuclease III [Prevotella melaninogenica ATCC 25845]
          Length = 365

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L + IG    + S  + AL H S++    +    + ERLEFLGD IL  ++  +++ 
Sbjct: 31  YLSLYQIIGIIPHDISYYKTALLHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 90

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + +V  +T +++A+E+ +   I  +            +    +V +
Sbjct: 91  HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGIGQLILSNGQTSSHNSYLGGNAFEALVGA 150

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           L      +  ++     V          + K     K++L EW+           +  + 
Sbjct: 151 LYLDHGYNACMKFMKQQVLGKLINIDKVAYKEVNF-KSKLIEWSQKNKVNMEFKLIENQK 209

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                P F   V + G+   +G   SK+ ++Q A+   L+R 
Sbjct: 210 DKQGSPTFHFQVIMEGIPCGEGHGYSKKESQQEASKLTLQRL 251


>gi|94970880|ref|YP_592928.1| ribonuclease III [Candidatus Koribacter versatilis Ellin345]
 gi|94552930|gb|ABF42854.1| RNAse III [Candidatus Koribacter versatilis Ellin345]
          Length = 258

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 105/230 (45%), Gaps = 22/230 (9%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---------YERLEFLGDRILG 52
            +   + LEK + + F  + LL +ALTHSS +   ++           E+LEF+GD +L 
Sbjct: 3   KSRDIAALEKALDHKFEEQELLVRALTHSSYAREQRDHIHDNSVPNDNEQLEFIGDSVLA 62

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
            + S  L   F   +EGELS     LVSA    Q AR LDL  F+R+     +      +
Sbjct: 63  FVTSQELVKKFPHFQEGELSKLRAYLVSARHLIQTARNLDLGKFLRLGRGEERSGGRSKS 122

Query: 113 SIQADVVESLIAALYLDGGIEVAGTF-------VDKYWKQRALKSGKFRRDAKTELQEWA 165
           +I  D +E++IAA+YLDGG+ VA  F        +    +    S     D K+ LQE A
Sbjct: 123 AILVDALEAVIAAIYLDGGLRVAQKFILREIVRPELKRMETEHGSALPVTDYKSALQEQA 182

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEI--SG----LAPAQGMDCSKR 209
           HA       Y V    GP+H   FTV   I   G       A+    +K+
Sbjct: 183 HAAGRKRIVYAVVKEEGPEHRKTFTVEARILSDGNEAPEFVARAEGPTKK 232


>gi|5579373|gb|AAD45518.1|AF160248_1 ribonuclease [Caenorhabditis elegans]
          Length = 860

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 13/228 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63
           +  LE+R+G  F N  LL KA T  +I ++   +   +RLE+LGD +L L++S  L+  F
Sbjct: 607 FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 666

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG +S+   SLVS +T + V  +L    F+  +     +        +AD+VE+ I
Sbjct: 667 PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAPYKTPE---LKLKDKADLVEAFI 723

Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV------TPEY 175
            ALY+D GIE    F+   +  R       +   DAK+ LQ+W  A           PEY
Sbjct: 724 GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRDPSSSEPDMPEY 783

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +V    GP ++  F + V   G   A   + +   AE   A   L   
Sbjct: 784 RVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANL 831



 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 65/207 (31%), Gaps = 49/207 (23%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------------------------ 38
                  E+ I Y F +R ++E AL HSS    Y                          
Sbjct: 378 NFSLDVFEEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRRKYGAEDKR 437

Query: 39  -------------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
                                      ERLE+LGD ++ L++S  L+       EG L+ 
Sbjct: 438 EKKRVAGIMSLFNIMKGTSGGEPILHNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLAT 497

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              +LV     + +A+   +   ++ S        +      A+  E+++AA+YLDGG+ 
Sbjct: 498 YRTALVQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALANAFEAVMAAIYLDGGLA 557

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTE 160
                  K          +        
Sbjct: 558 PCDVIFSKAMYGHQPVLKEKWDHINEH 584


>gi|29424049|gb|AAO73809.1| dicer-1 [Anopheles gambiae]
          Length = 2259

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 92/270 (34%), Gaps = 54/270 (20%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S S +   + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1982 FEEFEQALGYRFRDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRR 2041

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111
                G L+   ++LV+    + +A       +    S   ++V                 
Sbjct: 2042 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFLHLSPGLQEVIDRFVRIQQENGHRITE 2101

Query: 112  -------------------------------------TSIQADVVESLIAALYLDGGIEV 134
                                                      DV ES+  A++LD  + +
Sbjct: 2102 EEYYLPDEDDELGEYGAMGEDGPGEGRGVGEAEDVEVPKALGDVFESIAGAIFLDSDMSL 2161

Query: 135  AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
               +                   K+ ++E    +       K    +      R  V VE
Sbjct: 2162 DTVWKVYRKMMGPEIEKFSSSVPKSPIRELLEMEPETAKFGKPEKLTDG---RRVRVTVE 2218

Query: 195  ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            + G    +G+  + R A+  AA   L++  
Sbjct: 2219 VFGKGTFRGIGRNYRIAKCTAAKCALRQLK 2248



 Score = 42.2 bits (97), Expect = 0.059,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             +++ +ALT S+ +     + ERLE +GD  L   I+T L+  +D+  EG+LS   +  V
Sbjct: 1664 PAIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCRYDNVHEGKLSHLRSKQV 1721

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            S     ++ R   L   +  +     D            +E
Sbjct: 1722 SNLNLYRLGRRKRLGDCMIAAKFEPHDNWLPPCYYVPKELE 1762


>gi|58382645|ref|XP_312076.2| AGAP002836-PA [Anopheles gambiae str. PEST]
 gi|55241936|gb|EAA07793.2| AGAP002836-PA [Anopheles gambiae str. PEST]
          Length = 2256

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 92/270 (34%), Gaps = 54/270 (20%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S S +   + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1979 FEEFEQALGYRFRDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRR 2038

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111
                G L+   ++LV+    + +A       +    S   ++V                 
Sbjct: 2039 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFLHLSPGLQEVIDRFVRIQQENGHRITE 2098

Query: 112  -------------------------------------TSIQADVVESLIAALYLDGGIEV 134
                                                      DV ES+  A++LD  + +
Sbjct: 2099 EEYYLPDEDDELGEYGAMGEDGPGEGRGVGEAEDVEVPKALGDVFESIAGAIFLDSDMSL 2158

Query: 135  AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
               +                   K+ ++E    +       K    +      R  V VE
Sbjct: 2159 DTVWKVYRKMMGPEIEKFSSSVPKSPIRELLEMEPETAKFGKPEKLTDG---RRVRVTVE 2215

Query: 195  ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            + G    +G+  + R A+  AA   L++  
Sbjct: 2216 VFGKGTFRGIGRNYRIAKCTAAKCALRQLK 2245



 Score = 42.2 bits (97), Expect = 0.059,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             +++ +ALT S+ +     + ERLE +GD  L   I+T L+  +D+  EG+LS   +  V
Sbjct: 1664 PAIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCRYDNVHEGKLSHLRSKQV 1721

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            S     ++ R   L   +  +     D            +E
Sbjct: 1722 SNLNLYRLGRRKRLGDCMIAAKFEPHDNWLPPCYYVPKELE 1762


>gi|149200806|ref|ZP_01877781.1| Ribonuclease III [Roseovarius sp. TM1035]
 gi|149145139|gb|EDM33165.1| Ribonuclease III [Roseovarius sp. TM1035]
          Length = 227

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 79/210 (37%), Positives = 117/210 (55%), Gaps = 3/210 (1%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +      + R+G+ F N +LL +ALTHSS++   ++  +RLEFLGDR+LGL+++  L
Sbjct: 1   MKLSADIKAFQARLGHEFTNAALLVRALTHSSMATPNRDDNQRLEFLGDRVLGLVMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
            +    A EG+L+ RFN+LV  E C+ VARE+DL   +++             ++  D +
Sbjct: 61  LSQDQGATEGQLAPRFNALVRKEACADVAREIDLGGVLKLGRSEMLSGGRRKEALLGDAM 120

Query: 120 ESLI-AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+ + AA+YLD G E A   V + W  R     +  RDAKT LQEWA A+    P+Y   
Sbjct: 121 EA-VIAAVYLDAGFETARGVVLRLWGARLGAVKEDARDAKTSLQEWAQARGLPPPDYVEL 179

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            R GPDH P FT+  ++     A+    SK
Sbjct: 180 ARKGPDHAPIFTICAQLKSGQRAEATAGSK 209


>gi|281424694|ref|ZP_06255607.1| ribonuclease III [Prevotella oris F0302]
 gi|281401064|gb|EFB31895.1| ribonuclease III [Prevotella oris F0302]
          Length = 363

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           YS+L   +G+   N S  + AL H SI     +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YSSLYAILGFYPRNISYYKLALMHKSIMRRNAKGKPVNNERLEFLGDAILDAIVGDIVYQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  +T +++A EL ++  I  +            +    +V +
Sbjct: 80  HFPGKREGFLTNTRSKLVQRDTLNKLANELGISKLILSNGRSSSHNSYMGGNAFEALVGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +      D  +      +          + K     K++L EW+           +    
Sbjct: 140 VYLDRGYDACMNFMQHRILTQMINIDKVAYKEVNF-KSKLIEWSQKNRVKLNFEILEQGK 198

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +  P F   V I G+    G+  SK+ ++Q+A    L++ 
Sbjct: 199 DKNGSPIFNYKVVIEGIDGCDGVGYSKKESQQLACKLTLEQL 240


>gi|195624966|gb|ACG34313.1| endoribonuclease Dicer [Zea mays]
          Length = 329

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 90/239 (37%), Gaps = 15/239 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58
           MSA   + +E  +GY F ++SL+E ALTH S    +   ++YERLE+LGD +L  L+S  
Sbjct: 43  MSAKDVTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSRE 102

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +F  + + + G L+    + V  E  ++VA    L  F+R  +   +D   F        
Sbjct: 103 VFRTYRTLQPGPLTRLRAANVDTEKLARVAVHRGLYRFLRHKAPKLQDQICFFIEEMRKY 162

Query: 119 VESLIA-------ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
                           +   +  A      + ++   +  +   D    L+         
Sbjct: 163 PVHSNGLLDPPKVLCDIVESLIGAIYLDSNFDQEEVWRVFRTLADPLIGLETLGKHPVSE 222

Query: 172 TPEYKVTFRSG-----PDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKREG 224
             E+      G      + D    V V I G      +    K  A+  AA + L +  
Sbjct: 223 LFEFCQKTHRGVKFLKDEWDKSLKVQVLIDGEVVGSAIYGPKKEIAQNRAAKDALDKLK 281


>gi|323343670|ref|ZP_08083897.1| ribonuclease 3 [Prevotella oralis ATCC 33269]
 gi|323095489|gb|EFZ38063.1| ribonuclease 3 [Prevotella oralis ATCC 33269]
          Length = 361

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           YS+L + IG+   N S  + AL H SI     +    + ERLEFLGD IL  ++  ++++
Sbjct: 22  YSSLYRIIGFYPRNISYYKLALMHKSIMRRNSKGKPVNNERLEFLGDAILDAIVGHIVYD 81

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  +T +++A+E+ +   I  +            +    +V +
Sbjct: 82  HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGINRLILSNGRSSSHNSYMGGNAFEALVGA 141

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +      D  +      +          + K     K++L EW+           +  + 
Sbjct: 142 IYLDRGYDACMRFMNKRILAQMINIDKVAYKEVNF-KSKLIEWSQKNRVRMEFKMLDQKK 200

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             +  P F  +V + G+    G   SK+ ++Q+A+   L+R  
Sbjct: 201 DKNGSPMFQYMVCLEGVDGCSGTGYSKKESQQLASKLTLERLK 243


>gi|288801829|ref|ZP_06407271.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella
           melaninogenica D18]
 gi|288335871|gb|EFC74304.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella
           melaninogenica D18]
          Length = 354

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L + IG    + S  + AL H S++    +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YLSLYQIIGIIPHDISYYKTALLHKSVARRNAKGKPINNERLEFLGDAILDAIVGDIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + +V  +T +++A+E+ +   I  +            +    +V +
Sbjct: 80  HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGIGQLILSNGQTSSHNSYLGGNAFEALVGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           L      +  ++     V          + K     K++L EW+           +  + 
Sbjct: 140 LYLDHGYNACMKFMKQQVLGKLINIDKVAYKEVNF-KSKLIEWSQKNKVNMEFKLIENQK 198

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                P F   V + G+   +G   SK+ ++Q A+   L+R 
Sbjct: 199 DKQGSPTFHFQVIMEGIPCGEGHGYSKKESQQEASKLTLQRL 240


>gi|307329834|ref|ZP_07608989.1| ribonuclease III [Streptomyces violaceusniger Tu 4113]
 gi|306884563|gb|EFN15594.1| ribonuclease III [Streptomyces violaceusniger Tu 4113]
          Length = 278

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 4/204 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 26  LEGRLGYQLE-SALLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTLYRIHPDL 84

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R LDL +FIR+             SI AD +E++I A+
Sbjct: 85  PEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 144

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     KS             +   A  G+     +   +GPDH
Sbjct: 145 YLDQGLDAAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVSETGPDH 204

Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209
           +  FT    + G+A   G   SK+
Sbjct: 205 EKTFTAAARVGGVAYGTGTGRSKK 228


>gi|297156899|gb|ADI06611.1| ribonuclease III [Streptomyces bingchenggensis BCW-1]
          Length = 276

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 4/204 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 27  LEGRLGYQLE-SALLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTLYRIHPDL 85

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R LDL +FIR+             SI AD +E++I A+
Sbjct: 86  PEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 145

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     +S             +   A  G+     +   +GPDH
Sbjct: 146 YLDKGLDAAAELVHRLFDPLIDRSSNLGAGLDWKTSLQELTATEGLGVPEYLVSETGPDH 205

Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209
           +  FT    + G+A   G   SK+
Sbjct: 206 EKTFTAAARVGGVAYGTGTGRSKK 229


>gi|224825223|ref|ZP_03698329.1| Ribonuclease III [Lutiella nitroferrum 2002]
 gi|224602894|gb|EEG09071.1| Ribonuclease III [Lutiella nitroferrum 2002]
          Length = 238

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 6/210 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +++  L   +GY F    LL +ALTH S       + ER EF+GD IL   ++ +LF+ 
Sbjct: 7   EVKFGRLSVALGYRFTRPELLRQALTHRSFG---SPNNERFEFIGDSILNYTVARMLFDR 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F S  EGELS    +LV+  + +++A  L L  ++ +     K       SI AD +E+ 
Sbjct: 64  FPSLSEGELSRLRANLVNQSSLAEIALGLGLGDYLYLGEGELKSGGFNRPSILADALEAT 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            AA+  D     A   V + ++QR   +   K  +DAKT LQE   A+    P+Y++  +
Sbjct: 124 FAAVSFDTDFAAAENVVRRLYEQRVAAIDPTKHAKDAKTRLQEALQARKLALPKYRILSQ 183

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKR 209
           SG  H+  F V  ++  L     G   S+R
Sbjct: 184 SGEAHEQWFKVECDLGELAVIVTGEGGSRR 213


>gi|302764440|ref|XP_002965641.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii]
 gi|300166455|gb|EFJ33061.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii]
          Length = 524

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 86/246 (34%), Gaps = 30/246 (12%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLF 60
           +++ +  LE  +GY+F +R+LL +ALTHSS   +     YERLEF+GD +L  L++  ++
Sbjct: 191 NSIDFEGLENTLGYSFRSRNLLAQALTHSSSRQASMVPIYERLEFIGDAVLDHLLTRHIY 250

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +     G L+    + +++E+ ++   +  L + I   S+              ++ E
Sbjct: 251 FSYKDLHPGRLTDLRCAALNSESFARAMVKHKLHAHILHESNDFHSQIKTYAKHALNMEE 310

Query: 121 SLIA-----------------------ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
           + I                             G        V +   Q  +         
Sbjct: 311 NAIYSYGFGAVKAPKVLGDVFQSLVGAVYIDSGLNLDQVWKVFEPLLQPLVTPEAVPIHP 370

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
             EL E                         F     +      +G +  K+ A+++AA 
Sbjct: 371 VRELYELCDKHLKKLEWDYSLSGD------LFLARALVGNKVLGRGTNVQKKMAKKLAAI 424

Query: 218 EVLKRE 223
             + + 
Sbjct: 425 NAIAKL 430



 Score = 45.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 10/145 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M A++     K I Y      +L +ALT ++    Y   YER+E LGD  L   +ST L+
Sbjct: 26  MQAIQLR---KAINYNIPASKIL-EALTAANCHEPY--CYERIELLGDAYLKWAVSTRLY 79

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT----SIQA 116
             F    EGEL++    ++S      +A E  L +++R++  +     + +      + A
Sbjct: 80  LKFSDFPEGELTITRGKIISNSALHYLALEKGLETYVRINPFVPGREPTDLQELSSKVLA 139

Query: 117 DVVESLIAALYLDGGIEVAGTFVDK 141
           +VVE+LI A Y+  G + A   V+ 
Sbjct: 140 NVVEALIGAYYVHHGDKGARHVVEW 164


>gi|325268333|ref|ZP_08134966.1| ribonuclease 3 [Prevotella multiformis DSM 16608]
 gi|324989475|gb|EGC21425.1| ribonuclease 3 [Prevotella multiformis DSM 16608]
          Length = 356

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L + IG    + +  + AL H S++    +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YLSLYQIIGIIPHDITYYKTALLHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + +V  +T +++A+E+ +   I  +            +    +V +
Sbjct: 80  HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGINQLILSNGHSSSHNSYLGGNAFEALVGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           L      +  ++   T +          + K     K++L EW+           +  + 
Sbjct: 140 LYLDHGYNACMQFMKTRILGELINIDKVAYKEVNF-KSKLIEWSQKNKVKMEFKLIENQK 198

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                P F   V + GL   +G   SK+ ++Q A+   L+R 
Sbjct: 199 DKQGSPTFYFQVLMEGLPCGEGRGYSKKESQQEASKLTLQRL 240


>gi|119713601|gb|ABL97652.1| ribonuclease III [uncultured marine bacterium EB0_39H12]
          Length = 218

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 14/224 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M    Y+ LE    Y+F +  L + ALTH S+S     + ERLEFLGD IL L +S  LF
Sbjct: 1   MKNSAYTNLE----YSFQDEELFQLALTHKSLSSH---NNERLEFLGDAILNLYVSERLF 53

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N + + KEG+L+    S+VS E   +VA  L+L++ I++             SI  +V+E
Sbjct: 54  NTYGNLKEGKLTRFKASIVSRENLHRVAINLELSNHIKLGKGESLQGN----SILGNVLE 109

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A++LD         +D  +K   LK    +  +D K+ LQE    ++   P Y + 
Sbjct: 110 ALIGAIFLDSDYSETKNVLDNIFKDDFLKLVEEEELKDPKSTLQELIQKQYQSLPIYSLN 169

Query: 179 FRSGPDHDPRFTVVVE-ISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +     + +F V    + G    QG   +++ AE  AA+ +L+
Sbjct: 170 EQISDKKENQFEVTCSVVEGNLVTQGKGNTRKGAELNAASNMLE 213


>gi|313884921|ref|ZP_07818673.1| ribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619612|gb|EFR31049.1| ribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
          Length = 233

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 12/217 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M  +    ++K  G  F N  +L+ A  H+S ++ + +      ERLEFLGD +L L+ S
Sbjct: 1   MEKI-ADIIQKNTGITFTNIEILQTAFCHTSYANEHAKEKLKDNERLEFLGDAVLELITS 59

Query: 57  TLLFNHFDSAKEG---ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
                 F++  +    +L+     LV   + + VAR+  L   I++          F  S
Sbjct: 60  ---DFLFNTYPDKPEGQLTRMRAQLVKEPSLALVARKYQLDQLIQLGKGEEASGGRFRDS 116

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
           I +D  E+ + A+YLD G      F+ +   K           D KT  QE   ++  V 
Sbjct: 117 IVSDAFEAFLGAIYLDQGFARVTEFLQQALLKPHLQIIKVINIDYKTLFQEKVQSQGPVN 176

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            +Y++    GP H   F V + +     +QG   SK+
Sbjct: 177 IDYRLIKEEGPAHHRLFVVALYLDDQLVSQGQGYSKK 213


>gi|308485595|ref|XP_003104996.1| CRE-DCR-1 protein [Caenorhabditis remanei]
 gi|308257317|gb|EFP01270.1| CRE-DCR-1 protein [Caenorhabditis remanei]
          Length = 1941

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 94/256 (36%), Gaps = 40/256 (15%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            +++ LE+RIGY F  R+ L +A TH+S  ++     Y+RLEFLGD +L  +I+  LF   
Sbjct: 1673 QFANLEERIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDV 1732

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA------- 116
                 G L+   ++LV+    + +A + +              +      + A       
Sbjct: 1733 RQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCADRNFDTN 1792

Query: 117  -----------------------------DVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147
                                         DV ES+  A+YLD G  +  T+   +   R+
Sbjct: 1793 FNAEMYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVLFHMMRS 1852

Query: 148  LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                      ++ ++E          + + +         +  V V++       GM  +
Sbjct: 1853 TIDSCCANPPRSPIRELMEL---EASKARFSKMERILESGKVRVTVDVGNNMRFTGMGRN 1909

Query: 208  KRAAEQVAAAEVLKRE 223
             R A+  AA   LK  
Sbjct: 1910 YRIAKATAAKRALKYL 1925



 Score = 39.1 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 2/102 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
              LL  ALT S+ +     S ER E +GD  L    +  L++      EG+LS   +  V
Sbjct: 1425 PCLLLTALTTSNAADGM--SLERFETIGDSFLKFATTDYLYHTLQDQHEGKLSFARSKEV 1482

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            S     ++ ++L +   I  +     D       +     ++
Sbjct: 1483 SNCNLYRLGKKLGIPQLIVANKFDAHDSWLPPCYVPTCDFKA 1524


>gi|75909289|ref|YP_323585.1| ribonuclease III [Anabaena variabilis ATCC 29413]
 gi|75703014|gb|ABA22690.1| RNAse III [Anabaena variabilis ATCC 29413]
          Length = 228

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 83/197 (42%), Gaps = 8/197 (4%)

Query: 17  FANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F +  LL +ALTH S  +      E  ERLEFLGD IL  L    L+       E EL+ 
Sbjct: 7   FRDEKLLRRALTHRSYVNENPEEGEHNERLEFLGDAILNFLSGEYLYRSHPDRGEDELTR 66

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           R ++LV  +  ++ A E+ L   +R+     +D      ++ +   E++I A YLD    
Sbjct: 67  RRSALVDEKQLAKFAIEVGLDFRMRLGKGAIRDGGYQNPNLLSSTFEAVIGAYYLDNNSN 126

Query: 134 VA----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR-SGPDHDPR 188
           +                 +   +   D+K   QEW     G TP   +T + SGP H P 
Sbjct: 127 IEAVRVIIEPLFESVPEQIVVVRSNVDSKNRFQEWVQRNIGPTPPKYLTKQISGPSHAPE 186

Query: 189 FTVVVEISGLAPAQGMD 205
           F   V +      +G+ 
Sbjct: 187 FQAKVLVGEKEYGEGIG 203


>gi|260061436|ref|YP_003194516.1| putative ribonuclease III [Robiginitalea biformata HTCC2501]
 gi|88785568|gb|EAR16737.1| putative ribonuclease III [Robiginitalea biformata HTCC2501]
          Length = 245

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 94/215 (43%), Gaps = 6/215 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + + +G+   +  + ++A  H S++    + +  +YERLEFLGD +LG +IS  L+N   
Sbjct: 22  ISRILGFKPKSLEVYKRAFLHRSVNKKDKNGHPMNYERLEFLGDSMLGTIISKHLYNEVP 81

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG L+   + +VS +  +++ ++L L +F+           +   ++   +V ++  
Sbjct: 82  AGDEGYLTKMRSKIVSRKHLNELGKDLGLLNFVESRIPKAHFGENIHGNVFEALVGAIYL 141

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
                   +   + V + +       G+        ++     K     E++V   +G D
Sbjct: 142 DRGYKYCEKFIQSRVIEPYVDIEQLEGQVISYKSLVIEWCQKQK--KEFEFEVYEDTGND 199

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
               F V + I G   A+    SK+ AE+ A+   
Sbjct: 200 PVKHFAVKLHIDGRILAKARATSKKKAEEKASRRA 234


>gi|78065718|ref|YP_368487.1| ribonuclease III [Burkholderia sp. 383]
 gi|77966463|gb|ABB07843.1| RNAse III [Burkholderia sp. 383]
          Length = 408

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  SKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|238753924|ref|ZP_04615284.1| Ribonuclease 3 [Yersinia ruckeri ATCC 29473]
 gi|238707912|gb|EEQ00270.1| Ribonuclease 3 [Yersinia ruckeri ATCC 29473]
          Length = 226

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVITRLQRKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD GI+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSGIQTVERLILDWYRSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLGEPVVGTGSSRRK 210


>gi|198421916|ref|XP_002122382.1| PREDICTED: similar to rCG20888 [Ciona intestinalis]
          Length = 2053

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 95/266 (35%), Gaps = 51/266 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             S  E++I Y F N++ L +A TH+S   ++  + Y+RLEFLGD +L  LI+  LFN   
Sbjct: 1787 LSGFERKINYTFKNKAYLLQAFTHASYYYNTVTDCYQRLEFLGDAVLDFLITRHLFNDER 1846

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV------ 118
                G L+   ++LV+    + +A   D   + +  S     +       Q         
Sbjct: 1847 HHSPGALTDLRSALVNNTIFASLAVHYDFHKYFKSISPELHHIIEDFVMYQQKQEDAQGM 1906

Query: 119  ----------------------------------------VESLIAALYLDGGIEVAGTF 138
                                                     ES+  A+Y+D G++++  +
Sbjct: 1907 DAHLMRDYDRVEIVAPSSLEKDEEEGENEDVEVPKALGDIFESVAGAIYMDSGMDLSSVW 1966

Query: 139  VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
                     L         ++ ++E    +           R    +D +  V VEI G 
Sbjct: 1967 KVYSVMMLPLIEKFSACVPRSPVRELLEMEPETAKFSCAEKR----YDGKVRVTVEIIGK 2022

Query: 199  APAQGMDCSKRAAEQVAAAEVLKREG 224
               +G+  S R A+  AA   L+   
Sbjct: 2023 GRFKGVGRSYRIAKSAAARRALRYLK 2048



 Score = 44.1 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
              L+ +ALT S+ S  +  + ERLE LGD  L   ++  L+  +  + EG+LS   +  V
Sbjct: 1458 PGLILQALTLSNASDGF--NLERLEMLGDSFLKHAVTVYLYCTYPESHEGKLSYMRSKKV 1515

Query: 80   SAETCSQVARELD 92
            S     ++ ++  
Sbjct: 1516 SNYNLYRIGKQFG 1528


>gi|161723174|ref|YP_442265.2| ribonuclease III [Burkholderia thailandensis E264]
          Length = 469

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  SKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|300770264|ref|ZP_07080143.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762740|gb|EFK59557.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33861]
          Length = 229

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 7/225 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHF 63
            L+  +G+   N  L + A  H S++       + S ERLEFLGD ILG +++ LLF  +
Sbjct: 3   KLKNLLGFVPENIRLYQMAFRHKSVATAIKEGAKNSNERLEFLGDAILGSVVAELLFKKY 62

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+   + +VS    +Q++R+L L   I+  + +         S+  D  E+L+
Sbjct: 63  PYKDEGFLTEMRSKIVSRANLNQLSRKLGLNELIQYDARMISFPNK-QGSLLGDAFEALV 121

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLD G     +F+     +  +                      +  + +    + P
Sbjct: 122 GAVYLDKGYTFTKSFLLNRIIKTHVDIQLLEVTETNFKSRLIEWCQHLGKDVQFLPTANP 181

Query: 184 DHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           + +    F++   + G     G D +K++AE++AA +  +   I+
Sbjct: 182 EGESSKMFSIEAIVEGEVCGIGRDFNKKSAEKLAAEKACEYLKIF 226


>gi|159042756|ref|YP_001531550.1| ribonuclease III [Dinoroseobacter shibae DFL 12]
 gi|189043308|sp|A8LLD9|RNC_DINSH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157910516|gb|ABV91949.1| ribonuclease III [Dinoroseobacter shibae DFL 12]
          Length = 229

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 80/211 (37%), Positives = 115/211 (54%), Gaps = 3/211 (1%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +   S    RIG+ F    LL +ALTH+S S + +   +RLEFLGDR+LGL+++  L
Sbjct: 1   MKLSKEISAFCDRIGHRFDRPELLVRALTHASRSTAGRSDNQRLEFLGDRVLGLVMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                 A+EG+L+ R+N+LV  ETC++VARE+ L   +R+             ++  D +
Sbjct: 61  LEADPQAREGQLAPRYNALVRKETCAEVAREIGLGDVLRLGRSEMLTGGRRKDALLGDGM 120

Query: 120 ESLIA-ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E++I  A+Y D G E A   + + W +R        RD KT LQEWA A+    P Y  +
Sbjct: 121 EAVI-AAVYRDAGFEAAKALILRLWGKRIGAVEADARDPKTALQEWAQARGLPPPAYIES 179

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            RSGPDH P FT+   +   A A+    SKR
Sbjct: 180 ARSGPDHAPVFTISARLETGACAEAQAGSKR 210


>gi|260591983|ref|ZP_05857441.1| ribonuclease 3 [Prevotella veroralis F0319]
 gi|260536267|gb|EEX18884.1| ribonuclease 3 [Prevotella veroralis F0319]
          Length = 354

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 87/222 (39%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L   IG+   N    + AL H SI+    +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YLSLYHIIGFIPHNIDYYKTALLHKSIARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + +V  +T +++A+E+ +   I  +            +    +V +
Sbjct: 80  HFPYKREGFLTNTRSKIVQRDTLNRLAKEMGINQLILSNGHSSSHNSYMGGNAFEALVGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           L      +  +E     +          + K        ++     K  +        + 
Sbjct: 140 LYLDHGYNACMEFMRKQILGELINIDKVAYKEVNFKSKLIEWSQKNKVNMEFRLIEHEKD 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                P F   V +  +A  +G   SK+  +Q AA   L+R 
Sbjct: 200 -KQGSPTFHFQVFMEEIACGEGRGYSKKEGQQEAAKLTLQRL 240


>gi|206559398|ref|YP_002230159.1| ribonuclease III [Burkholderia cenocepacia J2315]
 gi|206561200|ref|YP_002231965.1| ribonuclease III [Burkholderia cenocepacia J2315]
 gi|198035436|emb|CAR51312.1| ribonuclease III 2 [Burkholderia cenocepacia J2315]
 gi|198037242|emb|CAR53164.1| ribonuclease III 1 [Burkholderia cenocepacia J2315]
          Length = 409

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|89900532|ref|YP_523003.1| ribonuclease III [Rhodoferax ferrireducens T118]
 gi|122479398|sp|Q21XN1|RNC_RHOFD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|89345269|gb|ABD69472.1| RNAse III [Rhodoferax ferrireducens T118]
          Length = 228

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 110/227 (48%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      L+ R+ + F+N  LL +ALTH S S    +  ERLEFLGD +LGL ++ LL+
Sbjct: 1   MNN-GLMALQARLQHEFSNPGLLTRALTHRSFS---LDHNERLEFLGDSVLGLAVADLLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               +  EG+LS    +LV  +T   +A  L L   IR+     +       SI AD +E
Sbjct: 57  ERLSTLPEGDLSRVRANLVKQDTLHHLALGLGLPEVIRLGEGEARSGGHKRPSILADALE 116

Query: 121 SLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G  VA           +         +D KTELQEW   +    P Y+V 
Sbjct: 117 AVIGAVYLDAGFAVAQGLVRRLFQAVEIKSDMEAIGKDPKTELQEWLQGRKMNLPLYRVV 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224
              G  H   F V  EI  L    +G+  S+RA EQ AAA +L+   
Sbjct: 177 ATLGAAHKQTFDVECEIVELNFLERGIGGSRRAGEQAAAAAMLQTLK 223


>gi|217420723|ref|ZP_03452228.1| ribonuclease III [Burkholderia pseudomallei 576]
 gi|237813195|ref|YP_002897646.1| ribonuclease III [Burkholderia pseudomallei MSHR346]
 gi|217396135|gb|EEC36152.1| ribonuclease III [Burkholderia pseudomallei 576]
 gi|237506043|gb|ACQ98361.1| ribonuclease III [Burkholderia pseudomallei MSHR346]
          Length = 467

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|254184210|ref|ZP_04890800.1| ribonuclease III [Burkholderia pseudomallei 1655]
 gi|184214741|gb|EDU11784.1| ribonuclease III [Burkholderia pseudomallei 1655]
          Length = 467

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|167903627|ref|ZP_02490832.1| ribonuclease III [Burkholderia pseudomallei NCTC 13177]
          Length = 467

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|134277308|ref|ZP_01764023.1| ribonuclease III [Burkholderia pseudomallei 305]
 gi|134250958|gb|EBA51037.1| ribonuclease III [Burkholderia pseudomallei 305]
          Length = 467

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|126454458|ref|YP_001067087.1| ribonuclease III [Burkholderia pseudomallei 1106a]
 gi|167825159|ref|ZP_02456630.1| ribonuclease III [Burkholderia pseudomallei 9]
 gi|167846656|ref|ZP_02472164.1| ribonuclease III [Burkholderia pseudomallei B7210]
 gi|167911876|ref|ZP_02498967.1| ribonuclease III [Burkholderia pseudomallei 112]
 gi|242317956|ref|ZP_04816972.1| ribonuclease III [Burkholderia pseudomallei 1106b]
 gi|254191245|ref|ZP_04897749.1| ribonuclease III [Burkholderia pseudomallei Pasteur 52237]
 gi|254195715|ref|ZP_04902141.1| ribonuclease III [Burkholderia pseudomallei S13]
 gi|254296871|ref|ZP_04964324.1| ribonuclease III [Burkholderia pseudomallei 406e]
 gi|126228100|gb|ABN91640.1| ribonuclease III [Burkholderia pseudomallei 1106a]
 gi|157808000|gb|EDO85170.1| ribonuclease III [Burkholderia pseudomallei 406e]
 gi|157938917|gb|EDO94587.1| ribonuclease III [Burkholderia pseudomallei Pasteur 52237]
 gi|169652460|gb|EDS85153.1| ribonuclease III [Burkholderia pseudomallei S13]
 gi|242141195|gb|EES27597.1| ribonuclease III [Burkholderia pseudomallei 1106b]
          Length = 467

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|126438815|ref|YP_001059800.1| ribonuclease III [Burkholderia pseudomallei 668]
 gi|126218308|gb|ABN81814.1| ribonuclease III [Burkholderia pseudomallei 668]
          Length = 467

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|76811515|ref|YP_334276.1| ribonuclease III [Burkholderia pseudomallei 1710b]
 gi|167739551|ref|ZP_02412325.1| ribonuclease III [Burkholderia pseudomallei 14]
 gi|254258167|ref|ZP_04949221.1| ribonuclease III [Burkholderia pseudomallei 1710a]
 gi|76580968|gb|ABA50443.1| ribonuclease III [Burkholderia pseudomallei 1710b]
 gi|254216856|gb|EET06240.1| ribonuclease III [Burkholderia pseudomallei 1710a]
          Length = 467

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|53725351|ref|YP_102339.1| ribonuclease III [Burkholderia mallei ATCC 23344]
 gi|121599423|ref|YP_993770.1| ribonuclease III [Burkholderia mallei SAVP1]
 gi|124385463|ref|YP_001028764.1| ribonuclease III [Burkholderia mallei NCTC 10229]
 gi|126450086|ref|YP_001081328.1| ribonuclease III [Burkholderia mallei NCTC 10247]
 gi|167000779|ref|ZP_02266586.1| ribonuclease III [Burkholderia mallei PRL-20]
 gi|238562760|ref|ZP_00439921.2| ribonuclease III [Burkholderia mallei GB8 horse 4]
 gi|254178423|ref|ZP_04885078.1| ribonuclease III [Burkholderia mallei ATCC 10399]
 gi|254199232|ref|ZP_04905598.1| ribonuclease III [Burkholderia mallei FMH]
 gi|254205539|ref|ZP_04911891.1| ribonuclease III [Burkholderia mallei JHU]
 gi|254357706|ref|ZP_04973979.1| ribonuclease III [Burkholderia mallei 2002721280]
 gi|52428774|gb|AAU49367.1| ribonuclease III/hypothetical protein, fusion [Burkholderia mallei
           ATCC 23344]
 gi|121228233|gb|ABM50751.1| ribonuclease III [Burkholderia mallei SAVP1]
 gi|124293483|gb|ABN02752.1| ribonuclease III/hypothetical protein [Burkholderia mallei NCTC
           10229]
 gi|126242956|gb|ABO06049.1| ribonuclease III [Burkholderia mallei NCTC 10247]
 gi|147748828|gb|EDK55902.1| ribonuclease III [Burkholderia mallei FMH]
 gi|147752982|gb|EDK60047.1| ribonuclease III [Burkholderia mallei JHU]
 gi|148026833|gb|EDK84854.1| ribonuclease III [Burkholderia mallei 2002721280]
 gi|160699462|gb|EDP89432.1| ribonuclease III [Burkholderia mallei ATCC 10399]
 gi|238522001|gb|EEP85448.1| ribonuclease III [Burkholderia mallei GB8 horse 4]
 gi|243063329|gb|EES45515.1| ribonuclease III [Burkholderia mallei PRL-20]
          Length = 467

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|53720035|ref|YP_109021.1| ribonuclease III [Burkholderia pseudomallei K96243]
 gi|167816752|ref|ZP_02448432.1| ribonuclease III [Burkholderia pseudomallei 91]
 gi|167895244|ref|ZP_02482646.1| ribonuclease III [Burkholderia pseudomallei 7894]
 gi|167919873|ref|ZP_02506964.1| ribonuclease III [Burkholderia pseudomallei BCC215]
 gi|52210449|emb|CAH36432.1| ribonuclease III [Burkholderia pseudomallei K96243]
          Length = 467

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|229818312|ref|ZP_04448593.1| hypothetical protein BIFANG_03612 [Bifidobacterium angulatum DSM
           20098]
 gi|229784182|gb|EEP20296.1| hypothetical protein BIFANG_03612 [Bifidobacterium angulatum DSM
           20098]
          Length = 246

 Score =  103 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 92/212 (43%), Gaps = 7/212 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64
           + L + +G   +   LL +ALTH S +H +   + YERLEFLGD +L L+ +  LF    
Sbjct: 24  NELLEALGTTIS-PDLLVQALTHRSFAHEHPGAKHYERLEFLGDAVLELISTETLFRLHP 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EGEL+      VS E  S +AR +L +  +I +         +  +SI  D+VESLI
Sbjct: 83  DMSEGELAKMRAKAVSEEALSAIARTKLHVEPYILLGHGEATQGGAQKSSILCDIVESLI 142

Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A +L+ GI+ A   V +      A  + +                 G          SG
Sbjct: 143 GATFLEHGIDGARKVVHRLIDDTLAEVATEGPALDWKTSLTVKAHHLGKGEPVYHMAVSG 202

Query: 183 PDHDPRFTVVVEI--SGLAPAQGMDCSKRAAE 212
           P++   FT  V +         G   SKR A+
Sbjct: 203 PEYAQVFTARVSLGDDEEILGVGKGSSKRKAQ 234


>gi|186681704|ref|YP_001864900.1| ribonuclease III [Nostoc punctiforme PCC 73102]
 gi|186464156|gb|ACC79957.1| ribonuclease III [Nostoc punctiforme PCC 73102]
          Length = 239

 Score =  103 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 107/221 (48%), Gaps = 8/221 (3%)

Query: 5   RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  +L +++G +        LL+ ALTH ++S     +YE+LEF+GD ++ L+ + +L+ 
Sbjct: 11  QLESLVQKLGLSREAPIKWELLDLALTHPTVSD--SANYEQLEFVGDAVVRLVSAVVLWE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++     G+ +   + LVS    +Q+AR   L  ++ V+     D     + +       
Sbjct: 69  NYPDCPVGDFAAIRSVLVSDRILAQLARIYGLELYLLVAGSATADKVGQESRLADAFEAV 128

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L A       +E+  +++D ++++    ++    R + K  LQEW  A+F V PEY+V  
Sbjct: 129 LGALYLSTQNLELIRSWLDPHFQELTTEIRLDPARLNYKAALQEWTQAQFKVLPEYRVVE 188

Query: 180 RSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            + P H+  RF   V + G    +G   S + AEQ AA   
Sbjct: 189 VTQPHHNQERFMAEVWLHGKKLGEGKGRSIKTAEQAAAKVA 229


>gi|302542233|ref|ZP_07294575.1| ribonuclease III [Streptomyces hygroscopicus ATCC 53653]
 gi|302459851|gb|EFL22944.1| ribonuclease III [Streptomyces himastatinicus ATCC 53653]
          Length = 312

 Score =  103 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 4/204 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 37  LEGRLGYQLE-SALLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTLYRIHPDL 95

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V++   ++V R LDL +FIR+             SI AD +E++I A+
Sbjct: 96  PEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAV 155

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLD G++ A   V + +     KS             +   A  G+     +   +GPDH
Sbjct: 156 YLDRGLDAAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVSETGPDH 215

Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209
           +  FT    + G+A   G   SK+
Sbjct: 216 EKTFTAAARVGGVAYGTGTGRSKK 239


>gi|332291744|ref|YP_004430353.1| Ribonuclease III [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169830|gb|AEE19085.1| Ribonuclease III [Krokinobacter diaphorus 4H-3-7-5]
          Length = 245

 Score =  103 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 6/211 (2%)

Query: 12  RIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            IG+        EKA TH S+    +     +YERLEFLGD +LG +I+  LFN      
Sbjct: 25  IIGFKPKEIKYYEKAFTHRSLGLKKADGNPLNYERLEFLGDAMLGSVIAAHLFNAVQGGN 84

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+   + +VS +  +++ R+L+L  ++R S  L     +   ++   +V ++     
Sbjct: 85  EGYLTKMRSKVVSRKHLNELGRDLNLVRYVRASIPLDNFGVNIHGNLFEALVGAIYLDRG 144

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
                +     V + +       G+        ++     K   T +++    +G D   
Sbjct: 145 YKYCEKFIAKRVIEPYVDIEKLEGRIISYKSVLIEWCQKEKR--TFKFETFEDTGQDTVK 202

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
            F V + I G   A+    SK+ AE++A+  
Sbjct: 203 HFGVKLFIDGKVVAKARATSKKKAEEIASKR 233


>gi|189462275|ref|ZP_03011060.1| hypothetical protein BACCOP_02961 [Bacteroides coprocola DSM 17136]
 gi|189431014|gb|EDU99998.1| hypothetical protein BACCOP_02961 [Bacteroides coprocola DSM 17136]
          Length = 314

 Score =  103 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 85/220 (38%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             K +G+   N  + ++AL H S           + ERLEFLGD IL  +++ +++  F+
Sbjct: 23  FYKMLGFYPRNIEIYQQALLHKSSSIKAGKGRLLNNERLEFLGDAILDAIVADIVYKKFE 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET ++VA E+ L   I+ ++           +    ++ ++  
Sbjct: 83  GKREGFLTNTRSKIVQRETLNRVAVEIGLDKLIKYTTRQSSHNSYMCGNAFEALIGAIYL 142

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
                   +     +   +      S K        ++     KF V            D
Sbjct: 143 DRGYRACKKFMEERIINQYLNLEKISRKEVNFKSKLIEWSQKNKFCVEFNLIEQSLD-SD 201

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            +P F   + +  +    G   SK+ ++Q AA   L +  
Sbjct: 202 QNPIFETQITVENIPAGTGKGYSKKESQQEAAHATLTKIK 241


>gi|134295164|ref|YP_001118899.1| ribonuclease III [Burkholderia vietnamiensis G4]
 gi|134138321|gb|ABO54064.1| RNAse III [Burkholderia vietnamiensis G4]
          Length = 416

 Score =  103 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|145593838|ref|YP_001158135.1| ribonuclease III [Salinispora tropica CNB-440]
 gi|145303175|gb|ABP53757.1| RNAse III [Salinispora tropica CNB-440]
          Length = 252

 Score =  103 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 6/198 (3%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LLE+ALTH S ++      + ERLEFLGD +LG++I+T LF++     EG+L+    
Sbjct: 23  DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDLPEGQLAKLRA 82

Query: 77  SLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           S+V+    ++VAR L       ++ +             SI AD +E+L+ A+YL+ G+E
Sbjct: 83  SVVNMRALAEVARGLGPTGLGPYLLLGKGEESTGGRDKASILADTLEALLGAIYLESGLE 142

Query: 134 VAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
              T + + +    A  +G+          +   A  G+         +GPDH   FT  
Sbjct: 143 TVATVIHRLFDPLMAESAGRGAALDWKTSLQELTAAQGLGVPEYRIEGTGPDHLKTFTAW 202

Query: 193 VEISGLAPAQGMDCSKRA 210
           V ++G         SK+ 
Sbjct: 203 VVVAGRRYGGAEGRSKKE 220


>gi|88801614|ref|ZP_01117142.1| putative ribonuclease III [Polaribacter irgensii 23-P]
 gi|88782272|gb|EAR13449.1| putative ribonuclease III [Polaribacter irgensii 23-P]
          Length = 245

 Score =  103 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNH 62
             L+K + ++  + +  +KA TH S+          +YERLEFLGD ILG +IS  L+  
Sbjct: 20  DELKKLLKFSPTSINKYKKAFTHRSVQMIDRKGIPINYERLEFLGDSILGAVISAYLYKE 79

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                EG L+   + +VS E  +++ ++L+L  F++ + D      +   +I   ++ ++
Sbjct: 80  APKGSEGYLTQMRSKIVSREHLNELGKDLNLIRFVKSNIDQANVGDNIHGNIFEALIGAI 139

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
                 +   +     V   +   A   GK        ++     K      +     SG
Sbjct: 140 YLDKGFNFCQKFIHQNVIAPYVDIAKLEGKITSYKGLIIEWCQKQK--KRYAFDAYEDSG 197

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            +    F+V + I G   A+G   SK+ AE+ A+  V
Sbjct: 198 NETTKHFSVKISIDGQQIAKGRATSKKKAEEQASKRV 234


>gi|282855648|ref|ZP_06264959.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Pyramidobacter
           piscolens W5455]
 gi|282586496|gb|EFB91753.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Pyramidobacter
           piscolens W5455]
          Length = 253

 Score =  103 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 83/220 (37%), Gaps = 11/220 (5%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
            +L+KR GY F +  LL  A T  S +       + ERLEFLGD  L LL+   L+  + 
Sbjct: 15  DSLQKRTGYQFRDPELLRLAFTQRSGAGGPNPSMNNERLEFLGDAALSLLVGEALYREYP 74

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG +++  + LV     S    E      +RV   +          +  D VE+   
Sbjct: 75  EADEGFMTIERSKLVCGRNLSAWGYEAGFDQMLRVCDGVEVSDA-----MVEDSVEAAAG 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A +LDGG++     +  +       +G   R        +             T R   +
Sbjct: 130 AFFLDGGLDAVRALLQSFSDYPDQGAGFDSRRHLERDCSYEKLG----APRYDTMRRRAN 185

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               F   V +       G+   +  AE+ AA + + R G
Sbjct: 186 GKIIFESSVSLDKEPSGTGIGADRTEAERNAARDAMCRLG 225


>gi|270265300|ref|ZP_06193561.1| ribonuclease 3 [Serratia odorifera 4Rx13]
 gi|270040704|gb|EFA13807.1| ribonuclease 3 [Serratia odorifera 4Rx13]
          Length = 226

 Score =  103 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQNVERLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|221201351|ref|ZP_03574390.1| ribonuclease III [Burkholderia multivorans CGD2M]
 gi|221208831|ref|ZP_03581829.1| ribonuclease III [Burkholderia multivorans CGD2]
 gi|221171287|gb|EEE03736.1| ribonuclease III [Burkholderia multivorans CGD2]
 gi|221178619|gb|EEE11027.1| ribonuclease III [Burkholderia multivorans CGD2M]
          Length = 406

 Score =  103 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|221214088|ref|ZP_03587061.1| ribonuclease III [Burkholderia multivorans CGD1]
 gi|221166265|gb|EED98738.1| ribonuclease III [Burkholderia multivorans CGD1]
          Length = 402

 Score =  103 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|161525340|ref|YP_001580352.1| ribonuclease III [Burkholderia multivorans ATCC 17616]
 gi|189349923|ref|YP_001945551.1| ribonuclease III [Burkholderia multivorans ATCC 17616]
 gi|160342769|gb|ABX15855.1| Ribonuclease III [Burkholderia multivorans ATCC 17616]
 gi|189333945|dbj|BAG43015.1| ribonuclease III [Burkholderia multivorans ATCC 17616]
          Length = 406

 Score =  103 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|87301736|ref|ZP_01084576.1| putative ribonuclease III [Synechococcus sp. WH 5701]
 gi|87283953|gb|EAQ75907.1| putative ribonuclease III [Synechococcus sp. WH 5701]
          Length = 259

 Score =  103 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 5/203 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           +E+ALTHSS       ++ERLEFLGD +L L  +  L  H  +   G+ S     LVS  
Sbjct: 45  IEEALTHSSAGRPI--NHERLEFLGDAVLRLAAAEFLERHHRAMDVGQRSALRAQLVSDR 102

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
             +++ +   + + + +      D  +  T         +       G +E   T++  +
Sbjct: 103 WLAELGKRCGIEAMVHLGPVAAGDSAARQTIRAEICEALIGGLYETTGSLEPVHTWLTPH 162

Query: 143 WKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLA 199
           W++ A +  +  +R + KT LQEW+ A+    P Y+   RS    DPR F   V++ G  
Sbjct: 163 WQRSAKELLADPYRHNWKTGLQEWSQAQGLGLPNYRCEERSRRHGDPRRFHCSVDLKGQP 222

Query: 200 PAQGMDCSKRAAEQVAAAEVLKR 222
             +G   S+R AEQ AA   L++
Sbjct: 223 VGEGWGGSRRDAEQQAARSALEQ 245


>gi|162147937|ref|YP_001602398.1| ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542555|ref|YP_002274784.1| Ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786514|emb|CAP56096.1| putative ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530232|gb|ACI50169.1| Ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
          Length = 249

 Score =  103 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 113/220 (51%), Gaps = 17/220 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----------------SYERLEFLGDR 49
            +++E R+GY F    LL +ALTH S +H                    S ERLEF+GDR
Sbjct: 13  VASVEARVGYRFRRPDLLREALTHRSAAHQRNGGGARRSRQPAARRGAGSNERLEFIGDR 72

Query: 50  ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
           +LGL+++  L   F   +EG L  R   LVS    + +A  ++L   + V+    +    
Sbjct: 73  VLGLVMAEWLLERFPDEQEGALGPRHAHLVSRPVLAAIAGTMNLQQALDVAEHEARAGVR 132

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
            + ++ AD VE+++ A+YLDGG+E A  FV   W +  +   +  +D KT LQEW  A+ 
Sbjct: 133 QVANVLADAVEAILGAIYLDGGLEPARRFVRAAWNEAIVAQAQPPKDPKTALQEWVLARG 192

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              P Y+     GP H PRF + V  +G + A+G+  SKR
Sbjct: 193 LPLPAYRTVQMDGPSHAPRFVIAVTAAGQS-AEGIAGSKR 231


>gi|307069613|ref|YP_003878090.1| ribonuclease III [Candidatus Zinderia insecticola CARI]
 gi|306482873|gb|ADM89744.1| ribonuclease III [Candidatus Zinderia insecticola CARI]
          Length = 221

 Score =  103 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 65/217 (29%), Positives = 104/217 (47%), Gaps = 6/217 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LEK + Y F N+SLL  ALTHSS S+    + E+LEFLGD IL   I+++LFN F +  
Sbjct: 3   KLEKILRYNFNNKSLLFLALTHSSYSNI---NNEKLEFLGDSILNTCITSILFNKFKNES 59

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG LS   + LV  E    ++++++L +F+ + +   K+  +   SI +  +E+L  A+Y
Sbjct: 60  EGFLSKFRSYLVRREKLYNISKKINLYNFLFLGNSEIKNSGNLKISILSSTLEALFGAIY 119

Query: 128 LDGGIEVAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +D         +     +           +D KT LQE         P+Y++       +
Sbjct: 120 IDSDFNTINNIIYKLYKFDINNFNIKYNIKDFKTLLQENLQKMKYFLPKYEIYKIYKLKN 179

Query: 186 DPRFTVVV-EISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              F +    +       GM    + AEQ+AA  +LK
Sbjct: 180 FQIFKIKCIFVEKNIITYGMAEKIKVAEQIAARFMLK 216


>gi|212695676|ref|ZP_03303804.1| hypothetical protein ANHYDRO_00193 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677349|gb|EEB36956.1| hypothetical protein ANHYDRO_00193 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 228

 Score =  103 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/198 (30%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 13  IGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           IGY+F N++L++ ALTHSS  +      + S ERLEFLGD IL L++S  L+ +  S  E
Sbjct: 18  IGYSFKNKNLIDVALTHSSYINESKDKNRSSNERLEFLGDSILDLVVSEELYKNHKSYPE 77

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+   + +V   + S+ + + +L+S++               S++AD  E+  AA+YL
Sbjct: 78  GKLTKIRSRIVCTSSFSKASEKFNLSSYLLFGKGEISHNGREKKSVKADTFEAFCAAIYL 137

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D G      F+ + + Q   +  +      D KT+LQE+ +       +YK+    GP+H
Sbjct: 138 DAGYVFLKNFLMENYYQTVKELLENDLLFIDYKTKLQEYFNKTNRTILKYKLAKEEGPEH 197

Query: 186 DPRFTVVVEISGLAPAQG 203
           +  F + V       + G
Sbjct: 198 NKTFYMDVYAKNKKLSTG 215


>gi|332885395|gb|EGK05644.1| hypothetical protein HMPREF9456_02446 [Dysgonomonas mossii DSM
           22836]
          Length = 290

 Score =  103 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +  K  G+   N +L E+AL H S S   ++    + ERLEFLGD IL  +++ ++F 
Sbjct: 20  YVSFYKIFGFYPYNITLYEQALLHKSSSIKLKDGKWINNERLEFLGDAILDAIVADIVFK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F+  KEG L+   + +V  ET +++A EL +   I+ S+           +    ++ +
Sbjct: 80  EFEYKKEGFLTNMRSKIVQRETLNKLALELGIDKLIKTSARNTTPNTHMYGNALEALIGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +          +     + K        + +   + K+ L EW+  +        V    
Sbjct: 140 IYLDQGYRVSKKFVLERLIKEHLNIDTVA-EQEANYKSRLIEWSQKQKISVSFDLVDSFV 198

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             ++ P F   V I G     G   SK+ ++Q AA E   + 
Sbjct: 199 DENNTPIFKTAVVILGEQAGLGTGYSKKESQQKAAKEAFNKL 240


>gi|325859734|ref|ZP_08172864.1| ribonuclease III [Prevotella denticola CRIS 18C-A]
 gi|327312785|ref|YP_004328222.1| ribonuclease III [Prevotella denticola F0289]
 gi|325482660|gb|EGC85663.1| ribonuclease III [Prevotella denticola CRIS 18C-A]
 gi|326945209|gb|AEA21094.1| ribonuclease III [Prevotella denticola F0289]
          Length = 356

 Score =  103 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L + IG    + +  + AL H S++    +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YLSLYQIIGIIPHDITYYKTALLHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + +V  +T +++A+E+ +   I  +            +    +V +
Sbjct: 80  HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGINQLILSNGHSSSHNSYLGGNAFEALVGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           L      +  ++   T +          + K     K++L EW+           +  + 
Sbjct: 140 LYLDHGYNACMKFMKTQILGELINIDKVAYKEVNF-KSKLIEWSQKNKVKMEFKLIENQK 198

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                P F   V + GL   +G   SK+ ++Q A+   L+R 
Sbjct: 199 DKQGSPTFYFQVLMEGLPCGEGRGYSKKESQQEASKLTLQRL 240


>gi|254452330|ref|ZP_05065767.1| ribonuclease III [Octadecabacter antarcticus 238]
 gi|198266736|gb|EDY91006.1| ribonuclease III [Octadecabacter antarcticus 238]
          Length = 197

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 78/191 (40%), Positives = 108/191 (56%)

Query: 32  ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
           +S   ++  +RLEFLGDR+LGL++S  L     +A EG L+ RFN+LV  ETC+ VAR++
Sbjct: 1   MSTPNRDDNQRLEFLGDRVLGLVMSEALLQADVNAPEGLLAPRFNALVRKETCADVARQI 60

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           DL + +++             ++ AD +E++IAA+Y+D G +VA   V   W  R     
Sbjct: 61  DLGAVLKLGRSEMLTGGRRKEALLADAMEAVIAAVYIDAGFDVARERVVALWGDRISNVE 120

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
           +  RD KT LQEWA  +    P Y  T RSGPDH P FT+ V +   A       SKR A
Sbjct: 121 EDARDPKTALQEWAQGQGEPPPSYIETARSGPDHAPIFTIEVRLHSGATDTATAPSKRQA 180

Query: 212 EQVAAAEVLKR 222
           EQ AA  +L R
Sbjct: 181 EQAAAKSLLDR 191


>gi|116074432|ref|ZP_01471694.1| putative ribonuclease III [Synechococcus sp. RS9916]
 gi|116069737|gb|EAU75489.1| putative ribonuclease III [Synechococcus sp. RS9916]
          Length = 247

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 5/206 (2%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +L+++ALTH+S       ++ERLEFLGD +L L  S  +  H      GE S     LVS
Sbjct: 40  ALVDEALTHTSTGRHI--NHERLEFLGDAVLRLAASEYIEQHHPQLPVGERSALRAQLVS 97

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
               + +   + + +   + +  R D  +  T         + A     G IE   +++ 
Sbjct: 98  DRWLAALGDSIGIEAVQTIGAKARGDDAARATLRAEATEALIGALYQGWGSIEPVHSWLT 157

Query: 141 KYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISG 197
            +W++ +        + +AK+ LQEW+ A+    P Y    +S    DP RF   VE+ G
Sbjct: 158 PHWQRTSAAVLADPHKGNAKSALQEWSQARKLGLPTYCSEEQSQRHGDPKRFRCQVELQG 217

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKRE 223
              A+G   S+R AEQ AA   L+  
Sbjct: 218 KTLAEGWGGSRRDAEQRAAQAALQSL 243


>gi|302815180|ref|XP_002989272.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii]
 gi|300143015|gb|EFJ09710.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii]
          Length = 524

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 86/246 (34%), Gaps = 30/246 (12%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLF 60
           +++ +  LE  +GY+F +R+LL +ALTHSS   +     YERLEF+GD +L  L++  ++
Sbjct: 191 NSIDFEGLENTLGYSFGSRNLLAQALTHSSSRQASMVPIYERLEFIGDAVLDHLLTRHIY 250

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +     G L+    + +++E+ ++   +  L + I   S+              ++ E
Sbjct: 251 FSYKDLHPGRLTDLRCAALNSESFARAMVKHKLHAHILHESNDFHSQIKTYAKHALNMEE 310

Query: 121 SLIA-----------------------ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
           + I                             G        V +   Q  +         
Sbjct: 311 NAIYSYGFGAVKAPKVLGDVFQSLVGALYIDSGLNLDQVWKVFEPLLQPLVTPEAVPIHP 370

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
             EL E                         F     +      +G +  K+ A+++AA 
Sbjct: 371 VRELYELCDKHMKKLEWDYSLSGD------LFLARALVGNKVLGRGTNVQKKMAKKLAAI 424

Query: 218 EVLKRE 223
             + + 
Sbjct: 425 NAIAKL 430



 Score = 45.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 10/145 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M A++     K I Y      +L +ALT ++    Y   YER+E LGD  L   +ST L+
Sbjct: 26  MQAIQLR---KAINYNIPASKIL-EALTAANCHEPY--CYERIELLGDAYLKWAVSTRLY 79

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT----SIQA 116
             F    EGEL++    ++S      +A E  L +++R++  +     + +      + A
Sbjct: 80  LKFSDFPEGELTITRGKIISNSALHYLALEKGLETYVRINPFVPGREPTDLQELSSKVLA 139

Query: 117 DVVESLIAALYLDGGIEVAGTFVDK 141
           +VVE+LI A Y+  G + A   V+ 
Sbjct: 140 NVVEALIGAYYVHHGDKGARHVVEW 164


>gi|110637800|ref|YP_678007.1| ribonuclease III [Cytophaga hutchinsonii ATCC 33406]
 gi|110280481|gb|ABG58667.1| RNAse III [Cytophaga hutchinsonii ATCC 33406]
          Length = 247

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 102/229 (44%), Gaps = 13/229 (5%)

Query: 7   STLEKRIGYA----FANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTL 58
             L ++I Y       N  L + A+ H+S +       +ESYERLE+LGD ILG +++  
Sbjct: 21  KILAQKIRYVTGMWPGNLHLYQMAIVHTSAADENESGVKESYERLEYLGDSILGAVVAEY 80

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  F    EG L+   + +V+ E  +QV ++L L+  +  +    K       S+  DV
Sbjct: 81  LFKRFPFKDEGFLTEIRSRIVNREILNQVGKDLGLSDIVVFNGSKGKQGHK---SLYGDV 137

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE--YK 176
           VE+++ A+YLD G E A  FV K      +      ++ K               +  + 
Sbjct: 138 VEAIVGAVYLDKGFENAKKFVLKKIVSSQIDVDAIIQNNKNFKSILLEWCQKENKKLEFV 197

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           +   SG  H   F   V ++  +  QG+  SK+ AEQ AA        +
Sbjct: 198 IIEESGHRHQKVFKAEVRVADESKGQGIGFSKKKAEQNAAEIACIELDL 246


>gi|193216954|ref|YP_002000196.1| ribonuclease III [Mycoplasma arthritidis 158L3-1]
 gi|193002277|gb|ACF07492.1| ribonuclease III [Mycoplasma arthritidis 158L3-1]
          Length = 222

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 5/210 (2%)

Query: 16  AFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
                  + K+LTH S   S  ++ +YE LEFLGD +L    S  +F +F    EGE + 
Sbjct: 11  KIRRPEFVFKSLTHKSFDQSDHFKFNYEYLEFLGDAVLEFYTSDRIFQNFPKYTEGEATR 70

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
               +VS E  +++A ++ L    R    + +++ +   S     +          G   
Sbjct: 71  HRQMIVSNENLAKIAHKIGLVEIARFGKKVFEEIKNIPNSKVFSDMFESFIGALYFGLGI 130

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
                        ++ +    +D K+  QE   A   ++    VT      ++  F   +
Sbjct: 131 GPTFQYLDSVLLDSVLNVIDSKDPKSYFQEIIQANGNLSRLRYVTV---AQNNGEFKSEL 187

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +       G   SK+ AE+ AA   LK+ 
Sbjct: 188 LVDQKVFGVGYGHSKKQAEKAAAISALKKM 217


>gi|321475108|gb|EFX86072.1| hypothetical protein DAPPUDRAFT_309030 [Daphnia pulex]
          Length = 1607

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 91/254 (35%), Gaps = 39/254 (15%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              + EKR+ Y F N++LL +ALTH+S   +     Y+RLEFLGD +L  L++   +++  
Sbjct: 1348 LESFEKRLRYTFKNKALLIEALTHASYIPNRITNCYQRLEFLGDAVLDYLVTRYYYDNPC 1407

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99
                  L+   +++V+ ET + +A +     +++                          
Sbjct: 1408 QYTPAILTDLRSAMVNNETFAVMAVQNRFHLYLKHLSLSLNVILDRFVRSQEENGHLLMH 1467

Query: 100  ---------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
                                +  +  D+ ES+  A+++D G+ +   +            
Sbjct: 1468 NYFVLEETSEPHQSLASNIDVPKVLGDIFESVAGAIFVDSGMSLDAVWKSYLPFLHDALE 1527

Query: 151  GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +   + L+             K    +    D R  V +EI G    +G   + + 
Sbjct: 1528 KFNEKIPISALRVLHERYPNALKFRKSESLA----DGRLCVAIEIQGTRVFKGAGGNSKT 1583

Query: 211  AEQVAAAEVLKREG 224
            A+  AA   L    
Sbjct: 1584 AKSAAAKYALSVLN 1597


>gi|91784707|ref|YP_559913.1| ribonuclease III [Burkholderia xenovorans LB400]
 gi|91688661|gb|ABE31861.1| RNAse III [Burkholderia xenovorans LB400]
          Length = 428

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A T + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLEVKVSGSG 202


>gi|325091272|gb|EGC44582.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H88]
          Length = 1432

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 77/232 (33%), Gaps = 15/232 (6%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
              +  R+GY F    LL  A TH+S   ++     Y+RLEFLGD +L ++    L++H+ 
Sbjct: 1170 KQIGNRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYP 1229

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                  L+    ++VS +    V  +L L   +   S+      +         V     
Sbjct: 1230 DRDPQWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESAD 1289

Query: 125  ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            +             +    +            +   ++++         E    + +  +
Sbjct: 1290 SPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQYFEDMSIYDAFAN 1349

Query: 185  HDP-------------RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              P             R    V +     AQG+  S R A+  A+   L + 
Sbjct: 1350 KHPTAGEVQMVDSTETRIYAAVIVHDKFVAQGIASSVRYAKTKASEAALAKL 1401



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 12/92 (13%)

Query: 21   SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             L  +ALT        H            ++YERLEFLGD  L +  S  LF       E
Sbjct: 976  HLALEALTKDSDNTEEHRKEQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDE 1035

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
             +  V+   L+  +     A  L L  F+R  
Sbjct: 1036 FDFHVKRMCLICNQNLFNTAVRLKLYEFVRTQ 1067


>gi|301167246|emb|CBW26828.1| Ribonuclease III (RNase III) [Bacteriovorax marinus SJ]
          Length = 261

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 8/224 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHF 63
            L++ I + F N +LL +ALTHSS  H      ++SYERLEFLGD +L L+I+ LL   F
Sbjct: 27  NLQRNISHKFKNMALLYEALTHSSFGHECFGDSKKSYERLEFLGDSVLDLIITDLLQEKF 86

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +  EG+LS    SLV+  +  ++A  L++   + V     K   +  +SI +DV E+++
Sbjct: 87  PAMVEGKLSKLRASLVNEVSLKELASSLEIERAVLVGKGELKAQGNLKSSILSDVFEAVL 146

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA----LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            A+Y D  +EV+        +             +R  + + +           +    +
Sbjct: 147 GAIYKDSSLEVSKKSFISIIENYEKLSGQIYLDEKRLQEFDSKSRLQEMTMSLFKTLPKY 206

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +    +  F V   +      +G   SK+  EQ  A  ++ + 
Sbjct: 207 SAKELSNGNFEVEASVLDKFLEKGEFSSKKKGEQKLAKNIIIKI 250


>gi|225561826|gb|EEH10106.1| dicer-like protein [Ajellomyces capsulatus G186AR]
          Length = 1502

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 15/232 (6%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
              +  R+GY F    LL  A TH+S   ++     Y+RLEFLGD +L ++    L++H+ 
Sbjct: 1240 KQIGNRLGYYFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEHLYHHYP 1299

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                  L+    ++VS +    VA +L L   +   S+      +         V     
Sbjct: 1300 DRDPQWLTEHKMAMVSNKFLGAVAVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESAD 1359

Query: 125  ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            +             +    +            +   ++++         E    + +  +
Sbjct: 1360 SPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQYFEDMSIYDAFAN 1419

Query: 185  H-------------DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                          +PR    V +     AQG+  S R A+  A+   L + 
Sbjct: 1420 KHPTAGEVQMVDSTEPRIYAAVIVHDKFVAQGIASSVRYAKTKASEAALAKL 1471



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 12/92 (13%)

Query: 21   SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             L  +ALT        H            ++YERLEFLGD  L +  S  LF       E
Sbjct: 1046 HLALEALTKDSDNTEEHRKEQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDE 1105

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
             +  V+   L+  +     A  L L  F+R  
Sbjct: 1106 FDFHVKRMCLICNQNLFNTAVRLKLYEFVRTQ 1137


>gi|194333018|ref|YP_002014878.1| Ribonuclease III [Prosthecochloris aestuarii DSM 271]
 gi|194310836|gb|ACF45231.1| Ribonuclease III [Prosthecochloris aestuarii DSM 271]
          Length = 277

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 10/203 (4%)

Query: 21  SLLEKALTHSSISHSYQ--------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            + + A TH S  H           +S +RLEFLGD +L L+IS  L+  F  + EG LS
Sbjct: 56  DIYKTAFTHRSFVHDQHQGSSPAPFDSNQRLEFLGDAVLDLIISEHLYKLFPESDEGALS 115

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              + +V+ ++ +  A+ + L + + +     ++      +  AD  E+LI A+YLD G+
Sbjct: 116 STRSKIVNRKSLADFAQAIALGNQLIIGESADEEKIRKSEATMADAFEALIGAIYLDKGL 175

Query: 133 EVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
                F+D +               + K+ L E+A A     P+Y +    G +H   FT
Sbjct: 176 PAVQRFIDDHVMTIVDVPKLATIEHNHKSRLIEFAQANQLSHPQYTIIREEGAEHQKTFT 235

Query: 191 VVVEISGLAPAQGMDCSKRAAEQ 213
           V V   G     G    K+ AEQ
Sbjct: 236 VEVSFDGKPFGTGTAARKKDAEQ 258


>gi|322834127|ref|YP_004214154.1| ribonuclease III [Rahnella sp. Y9602]
 gi|321169328|gb|ADW75027.1| ribonuclease III [Rahnella sp. Y9602]
          Length = 226

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEKLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNQPVVGTGSSRRK 210


>gi|260910581|ref|ZP_05917245.1| ribonuclease 3 [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635280|gb|EEX53306.1| ribonuclease 3 [Prevotella sp. oral taxon 472 str. F0295]
          Length = 473

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           YS+L + +G+   N    + AL H S+    ++    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YSSLFEILGFYPRNIGYYKLALMHKSVMRRGANGKPVNNERLEFLGDAILDAIVGDIVYR 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  ET +++A+E+ ++  I  S            +    +V +
Sbjct: 80  HFPGKREGFLTNTRSKLVQRETLNRLAQEMGISRLILSSGHSSSHNSYMGGNAFEALVGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +         +      +          + K     K++L EW+                
Sbjct: 140 IYLDRGYASCMRFMEKRILTKMINIDKVAYKEVNF-KSKLIEWSQKNRVKLDFIVKEQGK 198

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             +  P F   VE+ G+   +G   SK+ ++Q+A+   L+R  
Sbjct: 199 DKNGSPFFLFCVELEGIEGCKGRGYSKKESQQLASKLTLERLK 241


>gi|167948160|ref|ZP_02535234.1| ribonuclease III [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 225

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 106/205 (51%), Gaps = 6/205 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            S+L + +GY F N +LL++ALTH S+     ++ ER EFLGD ILG +I+  LF  F+ 
Sbjct: 5   LSSLCRALGYEFHNPALLQQALTHRSVG---GKNNERFEFLGDAILGFVIADALFEQFER 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EG+LS   +SLV  ET +++AR L L   +R+     +       SI AD VE+++AA
Sbjct: 62  ASEGQLSRLRSSLVKRETLAKIARGLKLGDHLRLGPGELRSGGQTRDSILADAVEAILAA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD         + + ++     L     ++D KT LQE   A+    P Y+V   +G 
Sbjct: 122 IYLDSDYSTTRRVILQIFESLLTGLDLNTQQKDPKTRLQEHLQARKIGLPSYQVIDITGD 181

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCS 207
            H   FTV      L   + G   S
Sbjct: 182 QHAQTFTVKCRSEALEQESDGSGSS 206


>gi|242033791|ref|XP_002464290.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor]
 gi|241918144|gb|EER91288.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor]
          Length = 1385

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 82/243 (33%), Gaps = 20/243 (8%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLF 60
            + +   +LE  + Y F++ SLL +ALTH S         Y+RLEFLGD +L  + +   +
Sbjct: 1128 NFINLRSLELMLDYNFSDPSLLLEALTHGSYQIAGTTACYQRLEFLGDAVLDHIFTDYFY 1187

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-------TS 113
            + +       L+   ++ V+    +  A +  L   I  SS       +          S
Sbjct: 1188 HQYPECTPELLTDLRSASVNNSCYAHAAVKAGLHKHILHSSSALHKKMADYLDKFEQSFS 1247

Query: 114  IQADVVESLIAA---------LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW 164
              +   E+ I                            W++              E+   
Sbjct: 1248 GPSHGWEAGICLPKVLGDVIESIAGAIYIDTKNDKKVVWRKMKRLLEPLATPDTLEIDPV 1307

Query: 165  AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI--SGLAP-AQGMDCSKRAAEQVAAAEVLK 221
                    P+      +    D   +V VE+   G    A     +KR A+++AA  VLK
Sbjct: 1308 KELHEFCDPKTCSIKYTVAREDRVTSVAVEVQTKGTTYKATRTGLTKRDAKKLAAKSVLK 1367

Query: 222  REG 224
               
Sbjct: 1368 DMK 1370


>gi|288928881|ref|ZP_06422727.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288329865|gb|EFC68450.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 459

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           YS+L + +G+   N S  + AL H S+    ++    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YSSLFEILGFYPRNISYYKLALMHKSVMRRGANGKPVNNERLEFLGDAILDAIVGDIVYR 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  ET +++A+E+ ++  I  S            +    +V +
Sbjct: 80  HFPGKREGFLTNTRSKLVQRETLNRLAQEMGISRLILSSGHTSSHNSYMGGNAFEALVGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +         +      +          + K     K++L EW+                
Sbjct: 140 IYLDRGYSSCMRFMEKRILAKMINIDKVAYKEVNF-KSKLIEWSQKNRVKLDFIVKEQGK 198

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             +  P F   V + G+    G   SK+ ++Q+A+   L+R  
Sbjct: 199 DKNGSPFFLFCVHLEGVEGCNGRGYSKKESQQLASKLTLERLK 241


>gi|240047461|ref|YP_002960849.1| Ribonuclease III [Mycoplasma conjunctivae HRC/581]
 gi|239985033|emb|CAT05026.1| Ribonuclease III [Mycoplasma conjunctivae]
          Length = 228

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLF 60
           + +   L  ++     N  +  +ALTH S    +     YE LEFLGD I+   +S  +F
Sbjct: 6   SYQILKLLDKLEILPKNLEIYNQALTHKSYQHFNPNSSHYEMLEFLGDSIINFKVSEFIF 65

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +  +  KEG+ S      +S+ T +++  +L L+  I+V    +  + +      ADV E
Sbjct: 66  SKINFQKEGQASQLRAKSISSLTFAKICDDLQLSDLIQVGKGAKDILTNTKLK--ADVFE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           S  AA+YLD G EV   F++KY     +++     +D K+E QE   +       Y+ T 
Sbjct: 124 SFCAAIYLDQGNEVLDLFLEKYLYDFVIQNAKHNNKDPKSEFQEKIQSFSTEKITYQSTK 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +S    D  F   +         G   S + AE  AA + L+R 
Sbjct: 184 QS----DGSFQSELIWDNQIFGVGSGKSMKEAEFNAARQALERM 223


>gi|311977725|ref|YP_003986845.1| probable ribonuclease 3 [Acanthamoeba polyphaga mimivirus]
 gi|82000280|sp|Q5UQT7|RNC_MIMIV RecName: Full=Probable ribonuclease 3; AltName: Full=Ribonuclease
           III; Short=RNase III
 gi|55416962|gb|AAV50612.1| RNAse III (dsRNA binding motif) [Acanthamoeba polyphaga mimivirus]
 gi|308204768|gb|ADO18569.1| probable ribonuclease 3 [Acanthamoeba polyphaga mimivirus]
          Length = 538

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 19/223 (8%)

Query: 19  NRSLLEKALTHSSI-----------------SHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  L  +A+TH S                      ++S ERL+FLGD ++  +I   LFN
Sbjct: 312 DLKLFYEAMTHRSYLIRKNLPNRDVPKSKSIVRLQKKSNERLQFLGDAVIHFIIGEYLFN 371

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  + EG L+     L ++E+   +A++ D++S++ +S ++         +I    +E+
Sbjct: 372 KYADSGEGYLTRLRCKLENSESLFFLAKQSDISSYLLISQNIEVLHGRENVNIIGGGLEA 431

Query: 122 LIAALYLDGG--IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            + ALYL+ G              +    +  +   + K  + +  +      P YK+  
Sbjct: 432 FVGALYLNIGLGTVKQFLLEIMRIELDINQIAENETNYKDLILQLYNKNKWGHPVYKILK 491

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GPDH   FT+ + +       G   SK+ AEQ+A+ ++ + 
Sbjct: 492 EEGPDHCKIFTMGLYLGNKLMGIGKASSKKKAEQIASKKMYQN 534



 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 12/214 (5%)

Query: 19  NRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           +  + E+A+ H S  +    ++YERLE+LGD I  ++I+   ++ ++   EG L+     
Sbjct: 42  DMHIFEEAMLHVSTIYEESDKTYERLEYLGDAIFHMIITEYFYHRYNEENEGFLTRLRIR 101

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           +   ++  ++++ L L +F+++         S    I  D+ ES I A YL+ G++    
Sbjct: 102 IERGDSMVELSKNLGLNNFVQIY------GISLNDHILEDIFESFIGAFYLNFGMKYTRL 155

Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDPR--FTVVV 193
           F+ K  ++    S     D   +     +         K        P ++ R  F   V
Sbjct: 156 FIIKLIEKHKNLSELIAYDDNYKDLLLRYFHQMKWGHPKYIEEIVIDPKNNQRNKFISKV 215

Query: 194 EIS-GLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           +         G   +K+ +EQ+A+   L   G+ 
Sbjct: 216 KNPFDKVIGIGSASTKKKSEQLASQMALTNLGVI 249


>gi|312795542|ref|YP_004028464.1| ribonuclease III [Burkholderia rhizoxinica HKI 454]
 gi|312167317|emb|CBW74320.1| Ribonuclease III (EC 3.1.26.3) [Burkholderia rhizoxinica HKI 454]
          Length = 408

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 8/206 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           ++  S LE R+ Y F N  LL +A+TH S S ++    ERLEFLGD +L  +++ LLF  
Sbjct: 18  SMPLSPLESRLHYEFRNAELLRQAMTHRSHSATH---NERLEFLGDSVLNCVVAALLFQR 74

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LS    +LV  ++  ++A+ L++A  +R+     +       SI AD  E++
Sbjct: 75  FGKLDEGDLSRVRANLVKQQSLYEIAQALNIAEALRLGEGELRSGGFRRPSILADTFEAV 134

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A++LDGG + A T + + +             +DAKT LQE+        P Y V   
Sbjct: 135 LGAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPSYAVIAT 194

Query: 181 SGPDHDPRFTVVVEISG---LAPAQG 203
           +G  H+ +F V   +          G
Sbjct: 195 TGAAHNQQFEVECTVPKLEVKVFGTG 220


>gi|288923504|ref|ZP_06417623.1| ribonuclease III [Frankia sp. EUN1f]
 gi|288345162|gb|EFC79572.1| ribonuclease III [Frankia sp. EUN1f]
          Length = 281

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 11/214 (5%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL++ALTH S ++      + ERLEFLGD +LGL+++  LF       EG+L+ +  
Sbjct: 23  DPELLDRALTHRSYAYENGGLPTNERLEFLGDAVLGLIVTAALFRRHPDLPEGQLAKQRA 82

Query: 77  SLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           S+V+    + VAR +       ++ +             SI AD +E++I A+YL   ++
Sbjct: 83  SVVNMRALADVARRIGPTGIGPYLLLGRGEEATGGRDKPSILADTLEAVIGAVYLSNSLD 142

Query: 134 VAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           VA  FV + +              D KT LQE         P+Y VT   GPDH  RFT 
Sbjct: 143 VASGFVHRLFDPLLDEAAGRGAGLDWKTSLQEQTALLGLGPPDYVVTEA-GPDHAKRFTA 201

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAA---EVLKR 222
              ++G    +G   SK+ AEQ AAA    +L++
Sbjct: 202 FARVAGEVLGEGEGGSKKEAEQRAAATAFAMLEK 235


>gi|312599268|gb|ADQ91291.1| hypothetical protein BpV2_124 [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 242

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 97/218 (44%), Gaps = 4/218 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLF 60
           +   ++E  +G    N  L +KA  H SI    +    S+E LEF+GD +LG +I+  LF
Sbjct: 3   IDRQSVELLVGTKLTNLDLYQKAFRHKSILKEDESLDGSFETLEFIGDSVLGFVITKFLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + +++ +EG L+     LV  ET + +A +L L +++++     ++       I  DV E
Sbjct: 63  DRYENRQEGFLTKARTKLVRGETLADIATKLGLYNWVQMDEKGMRNEWFKNPKILEDVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +L+ A+Y+D G+  A  F+   +      +           ++               +R
Sbjct: 123 ALVGAIYMDLGLLHAKQFILNIYTNPEYVNMNSIMVD-DNFKDHLMRHCQTNNLSLPEYR 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
                +  F + V +  +   +G   +K+ AEQ AA  
Sbjct: 182 VLNHENGIFYIDVYVDNVFLGRGHAKNKKQAEQHAAKR 219


>gi|296158234|ref|ZP_06841066.1| ribonuclease III [Burkholderia sp. Ch1-1]
 gi|295891570|gb|EFG71356.1| ribonuclease III [Burkholderia sp. Ch1-1]
          Length = 416

 Score =  102 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A T + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|227538735|ref|ZP_03968784.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241244|gb|EEI91259.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33300]
          Length = 229

 Score =  102 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 7/225 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHF 63
            L+  +G+   N  L + A  H S++       + S ERLEFLGD ILG +++ LLF  +
Sbjct: 3   KLKNLLGFVPENVRLYQMAFRHKSVATAIKEGAKNSNERLEFLGDAILGSVVAELLFKKY 62

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+   + +VS    +Q++R+L L   I+  + +         S+  D  E+L+
Sbjct: 63  PYKDEGFLTEMRSKIVSRANLNQLSRKLGLNELIQYDARMISFPNK-QGSLLGDAFEALV 121

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLD G     +F+     +  +                      +  + +    + P
Sbjct: 122 GAVYLDKGYAFTKSFLLNRIIKTHVDIQLLEVTETNFKSRLIEWCQHLGKDVQFLPTANP 181

Query: 184 DHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           + +    F++   + G     G D +K++AE++AA +  +   I+
Sbjct: 182 EGESSKMFSIEAIVEGEVCGIGRDFNKKSAEKLAAEKACEYLKIF 226


>gi|39939094|ref|NP_950860.1| dsRNA-specific ribonuclease [Onion yellows phytoplasma OY-M]
 gi|81402281|sp|Q6YPW7|RNC_ONYPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|39722203|dbj|BAD04693.1| dsRNA-specific ribonuclease [Onion yellows phytoplasma OY-M]
          Length = 238

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 9/210 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57
           M  ++  TL + +     N +L ++ALTHSS S+      E  ERLEFLGD I+GLL++ 
Sbjct: 1   MKNIQ--TLFQTLNITPQNLTLYKQALTHSSYSNEQNPPQEDNERLEFLGDAIVGLLMAD 58

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+       EG ++ +    V   + +  A  ++L +++ +    + +      SI AD
Sbjct: 59  YLY-SQSKEDEGIMTKKRAQAVCERSLTIYAHNIELQNYLLLGKGEK-NKDFNAKSIIAD 116

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
             E+L  A+YLD G   A             K+            +        T +YK+
Sbjct: 117 TFEALFGAIYLDLGYLTAKKVFHNIVLPHLAKTIYIIDFKTQ--LQEIVQSEKKTIQYKI 174

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
               GP H   F   V +       G   +
Sbjct: 175 VQEQGPAHSKNFVAEVYLEKNLLGTGEGST 204


>gi|260436673|ref|ZP_05790643.1| ribonuclease III [Synechococcus sp. WH 8109]
 gi|260414547|gb|EEX07843.1| ribonuclease III [Synechococcus sp. WH 8109]
          Length = 241

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 69/213 (32%), Gaps = 12/213 (5%)

Query: 19  NRSLLE---KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           N  LL    +ALTH S       + ERLEFLGD +L L  +  +         G  S   
Sbjct: 23  NPELLALVDQALTHVS--SGRTRNLERLEFLGDAVLRLAATEFIDRDHTDLAVGACSNLR 80

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
             LVS    + V   LD+   +               S         +          V 
Sbjct: 81  AQLVSDRWLADVGSALDIEQHLL--VGRHAQGDRSAQSRLRADATEALIGALYSALGNVE 138

Query: 136 GTFVDKYWKQRALKS----GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFT 190
                      A          + + KT LQEW+  +    P Y     S    DP RF 
Sbjct: 139 AIHRWLTPHWCATAQAVLTNPHQFNGKTTLQEWSQGQGLGLPNYATEECSRQHGDPERFR 198

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             V I     A+    S++ AEQ AA   L+  
Sbjct: 199 CRVSIQDRELAEAKGRSRKEAEQNAATAALQAL 231


>gi|103486701|ref|YP_616262.1| ribonuclease III [Sphingopyxis alaskensis RB2256]
 gi|123253313|sp|Q1GTU3|RNC_SPHAL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|98976778|gb|ABF52929.1| RNAse III [Sphingopyxis alaskensis RB2256]
          Length = 226

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 83/207 (40%), Positives = 115/207 (55%), Gaps = 3/207 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             L    L   IG    + +L + ALTH S   + +  Y+RLEFLGDR+LGL++++ L+ 
Sbjct: 3   DPLNTEALADIIGCIPDDLTLYDLALTHGS---TGRADYQRLEFLGDRVLGLVLASELYT 59

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F +A EGE+S R + L S  TC+ +A+ LDL + IR  +  R D      +I AD +E+
Sbjct: 60  RFPAASEGEMSSRLHVLASGATCAAIAQRLDLPALIRFGAQARSDGGRHSDNIAADAIEA 119

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           LI AL+L+ GIE A TF+   W           +  K  LQEWA A+    PEY++  R 
Sbjct: 120 LIGALFLERGIEAARTFILAQWGALIDGQQAAPKHPKAALQEWALARGRRPPEYEIVSRE 179

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSK 208
           GPDH PRF + V I  LA A+    SK
Sbjct: 180 GPDHAPRFRIAVSIGKLARAEAQGASK 206


>gi|157371904|ref|YP_001479893.1| ribonuclease III [Serratia proteamaculans 568]
 gi|189043344|sp|A8GI25|RNC_SERP5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157323668|gb|ABV42765.1| Ribonuclease III [Serratia proteamaculans 568]
          Length = 226

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S    +  ERLEFLGD IL  +I+  LF
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ RE DL   +R+     K       SI AD VE
Sbjct: 58  QRFPRVDEGDMSRMRATLVRGNTLAEMGREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVERLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|238499729|ref|XP_002381099.1| dicer-1, putative [Aspergillus flavus NRRL3357]
 gi|220692852|gb|EED49198.1| dicer-1, putative [Aspergillus flavus NRRL3357]
          Length = 605

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 87/254 (34%), Gaps = 37/254 (14%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65
            +E+++GY F    LL  A TH S   ++ +   Y+RLEFLGD +L ++    LF  +  
Sbjct: 325 KVEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPD 384

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---------------------- 103
                L+    ++ S +    +A +L L + +R  S+                       
Sbjct: 385 KDPQWLTEHKMAMASNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENESQGA 444

Query: 104 --RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
                V         D+VE+ + A ++D   +            ++        D     
Sbjct: 445 VDYWLVTKDPPKCLPDMVEAYLGAAFVDSDFQFRVVEDFFQRHVKSYFHDMTIYDTFANK 504

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFT--------VVVEISGLAPAQGMDCSKRAAEQ 213
                 +  +T EY  T       +              V +  +  A+G   S R A+ 
Sbjct: 505 HPTTFLQNRLTNEYGCTNYCLKAGEIPVVDGGTVSVLAAVIVHEVVIAEGTASSGRYAKV 564

Query: 214 VAAAEV---LKREG 224
            A+ +    L+  G
Sbjct: 565 KASEKALSVLENMG 578



 Score = 42.6 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 32/115 (27%), Gaps = 21/115 (18%)

Query: 20  RSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +   +A T        H      +     ++YERLEFLGD  L +  S  LF       
Sbjct: 127 PAYALEAFTKDSDNTEEHRVQQIHVQRGMGKNYERLEFLGDCFLKMATSISLFVQNPDDD 186

Query: 68  EGELSVRFNSLVSAET---------CSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           E +  V    L+  +            Q  R    +        L          
Sbjct: 187 EFDFHVNRMCLICNKNLFNTALKKELYQYIRSRGFSRHTWYPDGLTLLHGRDHRK 241


>gi|328716579|ref|XP_001944314.2| PREDICTED: endoribonuclease Dcr-1-like isoform 1 [Acyrthosiphon
            pisum]
          Length = 1609

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 91/246 (36%), Gaps = 35/246 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + + E+ +GY F +RS L +A+TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1357 FESFEQHLGYHFQDRSYLLQAMTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 1416

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99
                G L+   ++LV+    + +A       + +                          
Sbjct: 1417 QHSPGALTDLRSALVNNTIFASLAVRNGFHKYFKHLSPGLSDVVCRFVTIQEENGHTIDE 1476

Query: 100  ------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                    D  +     +     DV ES+  A+YLD  + +   +   +           
Sbjct: 1477 EFYFLGEDDCEEAEDVEVPKALGDVFESVAGAIYLDSNMSLDTVWKVYHKIMENEMEQFS 1536

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            +   K+ ++E            K +         R  VVVEI G    +G+  + R A+ 
Sbjct: 1537 KNVPKSPIRELLEL---EPETAKFSKPEKLADGRRVRVVVEIFGKGEFKGIGRNYRIAKC 1593

Query: 214  VAAAEV 219
             AA   
Sbjct: 1594 TAAKCA 1599



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 2/98 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S+L +ALT S+ +     + ERLE +GD  L   I+  L+   D+  EG+LS   +  V
Sbjct: 1124 PSVLLQALTMSNANDGI--NLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQV 1181

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            S     ++ +       +  +     D           
Sbjct: 1182 SNLNLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPH 1219


>gi|186475606|ref|YP_001857076.1| ribonuclease III [Burkholderia phymatum STM815]
 gi|184192065|gb|ACC70030.1| Ribonuclease III [Burkholderia phymatum STM815]
          Length = 441

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 9   MPLSPLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 65

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD +E+++
Sbjct: 66  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAIL 125

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + + +             +DAKT LQE+        P Y V    
Sbjct: 126 GAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIPLPTYTVVATH 185

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 186 GAAHNQQFEVECTVPKLDVKVSGSG 210


>gi|108804222|ref|YP_644159.1| RNAse III [Rubrobacter xylanophilus DSM 9941]
 gi|108765465|gb|ABG04347.1| RNAse III [Rubrobacter xylanophilus DSM 9941]
          Length = 233

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 91/222 (40%), Gaps = 17/222 (7%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L + +     +  L ++ALTH S++  Y  S  RLEFLGD IL   ++ L+F+ +
Sbjct: 15  MSIKELIEIL----PDP-LRKRALTHPSVADPYH-SNGRLEFLGDSILNHRVAELVFHSY 68

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+     LV     + V R   L   I  S            S+ AD VE++I
Sbjct: 69  PELLEGDLTRIRAHLVRKSFLASVGRSEGLEEMIESSV--------INDSVIADTVEAII 120

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A YL   I+               +           L +      G+ P Y+V  + GP
Sbjct: 121 GAAYL---IDKNLVLRTIDEIFNPAEVDTDELRDWKTLLQETLQAEGLRPTYRVISKQGP 177

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            H P F   V + G   A G   S + +EQ AA   L+  G+
Sbjct: 178 PHRPVFISGVSVDGEEVATGRGSSIKQSEQAAARAALEILGV 219


>gi|324500060|gb|ADY40039.1| Endoribonuclease dcr-1 [Ascaris suum]
          Length = 1970

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 84/254 (33%), Gaps = 35/254 (13%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            ++S LE  I Y F +R+ L +A TH+S   +     Y+RLEFLGD +L  +I+  LF H 
Sbjct: 1702 QFSKLEDSICYRFKDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQHP 1761

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD------ 117
                 G L+   ++LV+    + +A + +              +      + A+      
Sbjct: 1762 RQYSPGVLTDLRSALVNNTIFASLAVKYNFHKHFVAMCPGLHHMIEKFVRLCAEKNFSGA 1821

Query: 118  VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
               + +  +  +  I+       +  K               +        + V      
Sbjct: 1822 NFNAEMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLDVVWRVFYNLMK 1881

Query: 178  TFRSGPDHDP----------------RF------------TVVVEISGLAPAQGMDCSKR 209
                   ++P                RF             V V+I G     GM  S R
Sbjct: 1882 ETIEECCNNPPKSPIRELLELEPERARFSKLERILETGKVRVTVDIQGKCRFTGMGRSYR 1941

Query: 210  AAEQVAAAEVLKRE 223
             A+  AA   L+  
Sbjct: 1942 IAKCTAAKRALRYL 1955



 Score = 38.4 bits (87), Expect = 0.78,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 23   LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
            L +ALT S+ S     + ERLE +GD  L   ++  LF+      EG+LS   +  VS  
Sbjct: 1450 LLQALTMSNASDGI--NLERLETVGDSFLKYAVTDYLFHMNPEQHEGKLSFARSKEVSNC 1507

Query: 83   TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
               ++ ++ +L S +  +     D             ++
Sbjct: 1508 NLYRLGKKRNLPSLMVGAKFDPNDSWLPPCYAPTSDFKA 1546


>gi|330996547|ref|ZP_08320429.1| ribonuclease III [Paraprevotella xylaniphila YIT 11841]
 gi|329573103|gb|EGG54722.1| ribonuclease III [Paraprevotella xylaniphila YIT 11841]
          Length = 297

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 4/218 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFNH 62
           YS+  K +G+   +    E+AL H S S        + ERLEFLGD IL  ++  ++F H
Sbjct: 21  YSSFYKILGFYPHHIQYYEQALHHKSSSIKKQGSWINNERLEFLGDAILDAVVGDIVFRH 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+   + +V  ET +++A E+ L   I  S+           +    +V ++
Sbjct: 81  FKGKHEGFLTNTRSKIVQRETLNKLAVEIGLDKLIISSTHSSTHNSYMCGNAFEAMVGAI 140

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
                    +   G  +          + K        ++     +  +T +     + G
Sbjct: 141 YLDRGYSYCMRFIGKRIMTQLINIDKLAYKEVNFKSKLIEWGQKRRVEITFDLIDQAQEG 200

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
               P FT  + I G+   +G   SK+ ++Q+AA + L
Sbjct: 201 NS-TPVFTTQITIEGVTCCKGRGYSKKESQQLAAKDTL 237


>gi|332881433|ref|ZP_08449083.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332680809|gb|EGJ53756.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 297

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 4/218 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFNH 62
           YS+  K +G+   +    E+AL H S S        + ERLEFLGD IL  ++  ++F H
Sbjct: 21  YSSFYKILGFYPHHIQYYEQALHHKSSSIKKQGSWINNERLEFLGDAILDAVVGDIVFRH 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F   +EG L+   + +V  ET +++A E+ L   I  S+           +    +V ++
Sbjct: 81  FKGKREGFLTNTRSKIVQRETLNRLAVEIGLDKLIISSTHSSTHNSYMCGNAFEAMVGAI 140

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
                    +   G  +          + K        ++     +  +T +     R G
Sbjct: 141 YLDRGYSYCMRFIGKRIMTQLINIDKLAYKEVNFKSKLIEWGQKRRVEITFDLIDQAREG 200

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
               P FT  + I G+   +G   SK+ ++Q+AA + L
Sbjct: 201 SS-TPVFTTQITIEGVTCCKGRGYSKKESQQLAAKDTL 237


>gi|295677176|ref|YP_003605700.1| ribonuclease III [Burkholderia sp. CCGE1002]
 gi|295437019|gb|ADG16189.1| ribonuclease III [Burkholderia sp. CCGE1002]
          Length = 426

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|209517222|ref|ZP_03266067.1| Ribonuclease III [Burkholderia sp. H160]
 gi|209502358|gb|EEA02369.1| Ribonuclease III [Burkholderia sp. H160]
          Length = 423

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|258648277|ref|ZP_05735746.1| ribonuclease III [Prevotella tannerae ATCC 51259]
 gi|260852193|gb|EEX72062.1| ribonuclease III [Prevotella tannerae ATCC 51259]
          Length = 284

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 83/223 (37%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y  +   +G+   +      A  HSS  +  +     + ERLEFLGD +L +++S ++F 
Sbjct: 20  YRKVYNILGFYPHDIEYYRIAFAHSSSEYKGRNGRTVNNERLEFLGDAVLEMVVSDIVFR 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F+  +EG L+   + +V   T +Q+A E  ++  +R S        +   +       +
Sbjct: 80  RFERKREGFLTGTRSKIVQRATLNQLAEETGISKLLRTSMRATSHNSNIGGNAFEAFFGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           L                +          + K        L+     +     +   T  +
Sbjct: 140 LYLDRGYRAAYRFFAKRILGVHINLEAVAKKEENFKSKLLEWSQKNRLRAEFKLDRTENN 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              + P F   V + GL   +G   SK+ ++Q AA   L +  
Sbjct: 200 -ASNGPVFYTTVRLEGLEAGKGSGYSKKESQQKAAKAALMKLK 241


>gi|148377702|ref|YP_001256578.1| ribonuclease III (RNase III) [Mycoplasma agalactiae PG2]
 gi|148291748|emb|CAL59137.1| Ribonuclease III (RNase III) [Mycoplasma agalactiae PG2]
          Length = 226

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 106/224 (47%), Gaps = 4/224 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLL 59
           M+++              + ++  +A TH SS+++S  ++Y+ LEFLGD IL   +S +L
Sbjct: 1   MNSI--ENFLNNFNIKPVSLAVYRQAFTHGSSVANSKGKNYQTLEFLGDAILQFYVSAIL 58

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           FN F    +G+L++  + LV  ++ +Q+A  L L  F+ +SS++          + AD+ 
Sbjct: 59  FNSFKDKNQGQLTLIRSKLVCTDSLNQIADLLKLKDFLVLSSNVVATEVLSSKKVGADIF 118

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ESL+AA++LD G+     F+DK       +  + + +   + +           +  V +
Sbjct: 119 ESLVAAIFLDQGLPKVKDFLDKTLLPLVKQYKEGKIE-LKDSKTRLQEHMQSFSKKTVFY 177

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++    +  F       G     G+  SK  AE+ AA + L + 
Sbjct: 178 QTYQSENNLFKAEAIYEGNVYGSGVGKSKHEAEENAANDALNKL 221


>gi|187924875|ref|YP_001896517.1| ribonuclease III [Burkholderia phytofirmans PsJN]
 gi|187716069|gb|ACD17293.1| Ribonuclease III [Burkholderia phytofirmans PsJN]
          Length = 418

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|155370768|ref|YP_001426302.1| hypothetical protein FR483_N670L [Paramecium bursaria Chlorella
           virus FR483]
 gi|155122358|gb|ABT14226.1| hypothetical protein MT325_M672L [Paramecium bursaria chlorella
           virus MT325]
 gi|155124088|gb|ABT15955.1| hypothetical protein FR483_N670L [Paramecium bursaria Chlorella
           virus FR483]
          Length = 266

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFD 64
             +   +G    +  L   A    S +      E++ERLEFLGD +LG LI+  L++ F 
Sbjct: 43  EDIAHLVGMPVGDFGLYVTAF---SYNPILEGGETFERLEFLGDSVLGFLIAKYLYDTFP 99

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+      VS +  S++A  L L ++I +S        +    I  D  E+LI 
Sbjct: 100 GKNEGILTRIRVKFVSGKFLSKLALNLGLHNYIIMSQKGLYRGWNTNPKILEDAFEALIG 159

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGGI  A  F      + A            +       +  +     V       
Sbjct: 160 AIYLDGGINAAKQFFMTTLARHANIQELLIDSNHKDRLAKHCRRLSLGRPEFVIQFERGG 219

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            +  F V V + G   A+G   +++ AEQ A  + L   GI
Sbjct: 220 ANSLFIVGVHVDGNKFAEGSGTTRKDAEQDACNKALLHMGI 260


>gi|254252845|ref|ZP_04946163.1| Ribonuclease III [Burkholderia dolosa AUO158]
 gi|124895454|gb|EAY69334.1| Ribonuclease III [Burkholderia dolosa AUO158]
          Length = 377

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L++A  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNIADGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATL 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|193582606|ref|XP_001943370.1| PREDICTED: endoribonuclease Dcr-1-like [Acyrthosiphon pisum]
          Length = 1626

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 92/251 (36%), Gaps = 35/251 (13%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + + E+ +GY F +RS L +A+TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1374 FESFEQHLGYYFQDRSYLLQAMTHASYYPNCLTDCYQRLEFLGDAVLDYLITRHLYEDKR 1433

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99
                G L+   ++LV+    + +A +     +++                          
Sbjct: 1434 RHPPGALTDLRSALVNNTIFASLAVKNGFHKYLKHLSPGLSEVVYRFVAIQEENGHTIDE 1493

Query: 100  ------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                    D           +  D+ ES+  A+YLD  + +   +   +           
Sbjct: 1494 EFCFSGEDDFEDAEDVEAPKVLGDIFESVAGAIYLDSNMSLDAVWKVYHKIMENEIKQFS 1553

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            +    + ++E    +       K           R  V+VEI G    +G+  + R A+ 
Sbjct: 1554 KNVPISPVRELLELEPNTAKFSKPEKLVDG---RRVRVIVEILGKGVFKGIGRNYRIAKC 1610

Query: 214  VAAAEVLKREG 224
             AA   L    
Sbjct: 1611 TAAKCALNHLK 1621



 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 3/111 (2%)

Query: 8    TLEKRIGYAF-ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
              +  + Y    + S+L +ALT  + +       ERLE +GD  L   ++  L+   ++ 
Sbjct: 1175 DFQPDLNYHPGPSPSILLQALT--TANAIDGYDLERLETIGDSFLKYAVTAYLYCTHNNV 1232

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
             EG LS   ++ VS     ++ +       +  +    +        I   
Sbjct: 1233 HEGILSDLRSNHVSNLNLYRLGKLKMFGERMISTKFEPRSNWLPPCYIGPH 1283


>gi|317491018|ref|ZP_07949454.1| ribonuclease III [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920565|gb|EFV41888.1| ribonuclease III [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 226

 Score =  101 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L+K++GY F  + LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVTNRLQKKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIERLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVIGVGSSRRK 210


>gi|116618659|ref|YP_819030.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122271141|sp|Q03VW5|RNC_LEUMM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116097506|gb|ABJ62657.1| RNAse III [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 236

 Score =  101 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 7/217 (3%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           MS   + + + K+   +F + SLL +ALT  +  + + +     Y+RLEFLGD ++ +++
Sbjct: 1   MSQDSFKSYILKKFNISFNDESLLTEALTQRNYLNEHPDEKGRDYQRLEFLGDSVMQMIV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           +  LF  +    EG+L+    ++V   + +  +R + L   IR+             S+ 
Sbjct: 61  AEYLFKRYPDWHEGQLTEMRIAMVQTRSFAHFSRMVHLNEGIRLGKGEEMSGARDRDSLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            D+ E+ I ALYLD G +V   F+++            R        +      G     
Sbjct: 121 EDIWEAFIGALYLDQGADVVRQFLNQTLFAAIDTDFFDRFIDFKSRLQERLQTKGSVDID 180

Query: 176 KVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRA 210
             T +     D+   F   V  +    A+G   S + 
Sbjct: 181 YQTEKEEQLSDNTQLFEASVSANDKELARGTGKSIKD 217


>gi|212529276|ref|XP_002144795.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224]
 gi|210074193|gb|EEA28280.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224]
          Length = 1497

 Score =  101 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 87/250 (34%), Gaps = 33/250 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++K++GY F    LL  A TH S   + S    Y+RLEFLGD +L ++    L+  F 
Sbjct: 1212 NQIDKKLGYRFKYPRLLRSAFTHPSYPTAWSIVPCYQRLEFLGDSLLDMVCIENLYERFP 1271

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------------- 103
                  L+    ++VS +    +A  LDL + ++  S+                      
Sbjct: 1272 DRDPQWLTEHKMAMVSNKFLGSLAVRLDLHTHLQYFSNPLQGRIAQAVEDAQLAYESHQS 1331

Query: 104  --RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
                 +        +D+VE+ + A+++D G +            +         D     
Sbjct: 1332 VDFWIMIEDPPKCLSDMVEAYLGAIFVDSGFDFGVIESFYAKHIKPYFEDMSLYDTFANK 1391

Query: 162  QEWAHAKFGVTPEYKVTFRSGP-------DHDPRFT-VVVEISGLAPAQGMDCSKRAAEQ 213
                     +T ++     +         D  P      V +  +  AQ    S R A+ 
Sbjct: 1392 HPTTFLHGKLTDDFGCIQYTLKAAEIPSVDGAPTVVLAAVLVHDVDLAQATASSGRYAKI 1451

Query: 214  VAAAEVLKRE 223
             A+   LK  
Sbjct: 1452 KASEVALKNL 1461



 Score = 43.8 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 19/137 (13%)

Query: 9    LEKRIGYAFANRSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLIS 56
            LE ++GYA        +A+T        H            ++YERLEFLGD  L +  S
Sbjct: 1012 LEIQLGYA-------LEAVTKDSDNTEEHRLEQIQFQRGMGKNYERLEFLGDCFLKMATS 1064

Query: 57   TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
              LF    + +E +L V   +L+        A+E  +  +IR     R++       +  
Sbjct: 1065 ISLFVGSPNDQEFDLHVNRMTLICNRNLFNTAKERKIYEYIRSKGFSRRNWYPEGMKLLR 1124

Query: 117  DVVESLIAALYLDGGIE 133
                   A+ +  G  E
Sbjct: 1125 GKANEDKASTHTHGLGE 1141


>gi|296809942|ref|XP_002845309.1| dicer-like protein 1 [Arthroderma otae CBS 113480]
 gi|238842697|gb|EEQ32359.1| dicer-like protein 1 [Arthroderma otae CBS 113480]
          Length = 1521

 Score =  101 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 81/251 (32%), Gaps = 34/251 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64
            + +E+++GY F    LL  A  H S          Y+RLEFLGD +L +     LF  + 
Sbjct: 1238 NQIEEKLGYRFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMACVNHLFTKYP 1297

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102
                  L+    ++VS +    +A  L+L   +   S+                      
Sbjct: 1298 DKDPQWLTEHKMAMVSNKFLGSLAVGLNLHVHLIHISNVLQGQITCYTEELQAMKMEMGG 1357

Query: 103  --LRKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155
                    +       D+VE+ + A+++D        +       +++ +       F  
Sbjct: 1358 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVIDDFFKRFIQHYFEDMTVYDTFAN 1417

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT---VVVEISGLAPAQGMDCSKRAAE 212
                       A       Y +     P  D         V +     A+G+  S R A+
Sbjct: 1418 KHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTIRALAAVCVHNDIVAEGVATSPRHAK 1477

Query: 213  QVAAAEVLKRE 223
              A+   L+  
Sbjct: 1478 LKASQNALQIL 1488



 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 16/112 (14%)

Query: 1    MSALRYSTLE--KRIGYAFANRSLLEKALTHSS------------ISHSYQESYERLEFL 46
            M +     LE  +++    +   L  +ALT  S                  ++YERLEFL
Sbjct: 1023 MESY-LIALEACEKLQLKIS-PELALEALTKDSENTEEHGLEQIRFQSGMGKNYERLEFL 1080

Query: 47   GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            GD  L +  S  LF       E +  V+   L+  +     A  L++  +IR
Sbjct: 1081 GDCFLKMATSISLFAMNPDNDEYDFHVKRMLLICNQNLFNNAIILEVFKYIR 1132


>gi|288800507|ref|ZP_06405965.1| ribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332720|gb|EFC71200.1| ribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
          Length = 321

 Score =  101 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 91/218 (41%), Gaps = 5/218 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63
           +L   +G+   N  L + AL+H SI    ++    + ERLEFLGD IL  ++  +++ HF
Sbjct: 2   SLYTILGFYPRNIELYQMALSHKSIHFKNKKGKPVNNERLEFLGDAILDAIVGDIVYKHF 61

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              +EG L+   + LV  ET +++A+E+ L+  +  SS       S+M     + +   +
Sbjct: 62  PGKREGFLTNTRSKLVQRETLNKIAQEIGLSR-LIYSSGRNFSHNSYMAGNAFEALIGAL 120

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
                                           + K+ L EWA           +  +   
Sbjct: 121 YLDRGYNLCMRFMQEKILKKMVNIDTVAYKEVNFKSRLIEWAQKNKMNIAFNLLEQKKDE 180

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           + +P F   V I G+        SK+ ++Q+A+ E L+
Sbjct: 181 EGNPVFKYCVVIEGIKCNSASGFSKKESQQLASEETLE 218


>gi|124024288|ref|YP_001018595.1| ribonuclease III [Prochlorococcus marinus str. MIT 9303]
 gi|123964574|gb|ABM79330.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9303]
          Length = 262

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 17/234 (7%)

Query: 5   RYSTLEKRI------------GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG 52
           +   L K++            G      ++L++ALTH+S       ++ERLEFLGD +L 
Sbjct: 24  QLQNLLKKLALVDPARSKSCPGTEPRGLAILDEALTHTSAQEII--NHERLEFLGDAVLR 81

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L  S  +  HF     GE S     LVS    ++V + + + + + +      D  +  T
Sbjct: 82  LAASEYIDRHFPRMDVGERSALRAHLVSDRWLAEVGQRIGIEAVLIIGPMAAGDASAKPT 141

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFG 170
                    + A       +E    ++  +W + +        R ++K+ LQEW+ A+  
Sbjct: 142 LQAEATEALIGALYECWQSLEPIHHWLTPHWHEASSAVLADPHRLNSKSALQEWSQARGL 201

Query: 171 VTPEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             P Y+   RS    DP R+   V +      +G   S+R AEQ AA   L+  
Sbjct: 202 GLPRYECAERSKQHGDPQRYLCQVHLDNRPIGEGWGGSRRNAEQEAARHSLEAL 255


>gi|291320365|ref|YP_003515628.1| ribonuclease III [Mycoplasma agalactiae]
 gi|290752699|emb|CBH40673.1| Ribonuclease III (RNase III) [Mycoplasma agalactiae]
          Length = 226

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 107/224 (47%), Gaps = 4/224 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLL 59
           M+++   +          + ++  +A TH SS+++S  ++Y+ LEFLGD IL   +S +L
Sbjct: 1   MNSI--ESFLNNFNIKPVSLAVYRQAFTHGSSVANSKGKNYQTLEFLGDAILQFYVSAIL 58

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           FN F    +G+L++  + LV  ++ +Q+A  L L  F+ +SS++          + AD+ 
Sbjct: 59  FNSFKDKNQGQLTLIRSKLVCTDSLNQIADLLKLKDFLVLSSNVVATEVLSSKKVGADIF 118

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ESL+AA++LD G+     F+DK       +  + + +   + +           +  V +
Sbjct: 119 ESLVAAIFLDQGLPKVKEFLDKTLLPLVKQYKEGKIE-LKDSKTRLQEYMQSFSKKTVFY 177

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++    +  F       G     G+  SK  AE+ AA + L + 
Sbjct: 178 QTYQSENNLFKAEAIYEGNVYGSGVGKSKHEAEENAANDALNKL 221


>gi|227432061|ref|ZP_03914075.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352178|gb|EEJ42390.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 236

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 7/217 (3%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           MS   + + + K+   +F + SLL +ALT  +  + + +     Y+RLEFLGD ++ +++
Sbjct: 1   MSQDSFKSYILKKFNVSFNDESLLTEALTQRNYLNEHPDEKGRDYQRLEFLGDSVMQMIV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           +  LF  +    EG+L+    ++V   + +  +R + L   IR+             S+ 
Sbjct: 61  AEYLFKRYPDWHEGQLTEMRIAMVQTRSFAHFSRMVHLNEGIRLGKGEEMSGARDRDSLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            D+ E+ I ALYLD G +V   F+++                     +      G     
Sbjct: 121 EDIWEAFIGALYLDQGADVVRQFLNQTLFAAIDTDFFDHFIDFKSRLQERLQTKGSVDID 180

Query: 176 KVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRA 210
             T +     D+   F   V  +    A+G   S + 
Sbjct: 181 YQTEKEEQISDNTQLFEASVSANDKELARGTGKSIKD 217


>gi|295425203|ref|ZP_06817906.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664]
 gi|295064979|gb|EFG55884.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664]
          Length = 227

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 93/213 (43%), Gaps = 9/213 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIS 56
           M + ++   L ++ G  F N  LLE+A THSS ++ + E    YE+LEFLGD +L L +S
Sbjct: 1   MVSTKFLKQLNEKYGIKFHNEKLLEEAFTHSSYANEHPEGVRDYEKLEFLGDAVLELAVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ H+ +  EGEL+   +++V  E  S+ A E      I +     K       ++  
Sbjct: 61  DYLYRHYPNLNEGELTRMRSNIVRTEGFSEFAIECGFQDEINLGKGEEKAGARHRKTLLE 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           DV E+   ALYLD G++    F+         K             +    K G      
Sbjct: 121 DVFEAFNGALYLDQGMKAVTHFLHLTVYPLIDKGEFDASRDYKTDLQELLQKDGPVNIEY 180

Query: 177 VT--FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           VT      P H   F V ++I+    +QG   +
Sbjct: 181 VTLSESQLPSH---FVVELKINDHVQSQGEGHN 210


>gi|18402610|ref|NP_566661.1| RTL2 (RNASE THREE-LIKE PROTEIN 2); double-stranded RNA binding /
           ribonuclease III [Arabidopsis thaliana]
 gi|75274109|sp|Q9LTQ0|RTL2_ARATH RecName: Full=Ribonuclease 3-like protein 2; AltName:
           Full=Ribonuclease III-like protein 2; Short=RNase
           III-like protein 2; AltName: Full=Ribonuclease
           three-like protein 2
 gi|9294562|dbj|BAB02825.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642855|gb|AEE76376.1| RNAse THREE-like protein 2 [Arabidopsis thaliana]
          Length = 391

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 29/244 (11%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M ++    +EK + Y F+N+SLL++A+TH+S +     SYERLEF+GD  +GL IS  L+
Sbjct: 57  MESM--EAVEKILNYKFSNKSLLKEAITHTSCTD--FPSYERLEFIGDSAIGLAISNYLY 112

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111
             + S +  +LS+   + VS E  ++V+    L SF+R ++    +              
Sbjct: 113 LTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDD 172

Query: 112 -----------TSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKT 159
                        + AD+ ESL  A+Y+D   ++     + +   +  +     ++  + 
Sbjct: 173 LSVSYGGLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQP 232

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
               +              ++ G         V+ +     A G   +K  A  +AA E 
Sbjct: 233 VSMLFKLCHKHKKRIDIKNWKDGN----VSIAVIYLDDELLASGRAENKDIARLIAAKEA 288

Query: 220 LKRE 223
           L++ 
Sbjct: 289 LRKL 292


>gi|238026617|ref|YP_002910848.1| ribonuclease III [Burkholderia glumae BGR1]
 gi|237875811|gb|ACR28144.1| Ribonuclease III [Burkholderia glumae BGR1]
          Length = 427

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MSQSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L++A  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNIADGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|225462996|ref|XP_002264486.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296084589|emb|CBI25610.3| unnamed protein product [Vitis vinifera]
          Length = 1623

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 97/246 (39%), Gaps = 29/246 (11%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            S+     LEK +G+ F ++ LL +A+ H S +      Y+RLEFLGD +L  LI++ L++
Sbjct: 1195 SSTDVPALEKLLGHEFLHKGLLLQAIVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYS 1254

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD------------------- 102
             +   K G+++   +  V+ ++ + VA    L  F+   +                    
Sbjct: 1255 VYPKLKPGQMTDLRSLSVNNKSFANVAVSRSLHEFLICDASSLSEAIKKYVDFIRTPTLD 1314

Query: 103  LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTEL 161
                          D+VES + A+ LD G ++   +        R +     + +   EL
Sbjct: 1315 KDLHEGPKCPKALGDLVESCMGAILLDKGFDLNHAWNIMLSILDRIMSFSDLQLNPIREL 1374

Query: 162  QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---AQGMDCSKRAAEQVAAAE 218
            QE                         F V  ++SG      A   + +++ A ++A+ +
Sbjct: 1375 QELCQHHNWDLQFPTSKQG------GTFLVEAKVSGDDICTTASATNANRKDARRIASNQ 1428

Query: 219  VLKREG 224
            + K+  
Sbjct: 1429 LFKKLK 1434



 Score = 37.2 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 6/126 (4%)

Query: 24   EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
             +ALT       +  S ERLE LGD  L   +   LF  +D+  EGEL+ R +++V+   
Sbjct: 1016 LEALTTEKCLERF--SLERLEVLGDAFLKFAVGRRLFLLYDALDEGELTRRRSNVVNNSN 1073

Query: 84   CSQVARELDLASFIRVSS----DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
              ++A   +L  +IR  S                 + +   ++ +        EV  +  
Sbjct: 1074 LFKLAVRRNLQVYIRDQSFDPGQFFALGHRCPRICEKETEMAIHSRCGKTPTTEVRCSKC 1133

Query: 140  DKYWKQ 145
              +  +
Sbjct: 1134 HHWLHK 1139


>gi|330815986|ref|YP_004359691.1| Ribonuclease III [Burkholderia gladioli BSR3]
 gi|327368379|gb|AEA59735.1| Ribonuclease III [Burkholderia gladioli BSR3]
          Length = 403

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/202 (32%), Positives = 98/202 (48%), Gaps = 6/202 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F   
Sbjct: 4   SQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKL 60

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A+
Sbjct: 61  DEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAIIGAV 120

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LDGG E A   + + +             +DAKT LQE+        P Y V    G  
Sbjct: 121 FLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAA 180

Query: 185 HDPRFTVVVEISGLAP-AQGMD 205
           H+ +F V   +  L     G  
Sbjct: 181 HNQQFEVECTVPKLDIKVSGSG 202


>gi|33241211|ref|NP_876153.1| dsRNA-specific ribonuclease/ribonuclease III [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|5738536|emb|CAB52818.1| ribonuclease III [Prochlorococcus marinus]
 gi|33238741|gb|AAQ00806.1| dsRNA-specific ribonuclease/ribonuclease III [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 249

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            +     ++K   Y      +L +ALTH+S +     ++ERLEF GD +L L  S  + +
Sbjct: 28  HSSDIEVIKKNEDYCLK---ILNEALTHTSFN--LSINHERLEFQGDAVLRLAASEYIQS 82

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF     G+ S     LVS    ++V  ++ + + + +++   KD  +  T         
Sbjct: 83  HFPKLSVGDRSALRAQLVSDRWLAKVGYKIGIKTTMLIANKALKDEAATDTICAEGTEAL 142

Query: 122 LIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + A       I+    +       +   + +   +++ K+ LQEW+  +    P Y +  
Sbjct: 143 IGALYECLRNIDAIQNWLEPYWNIESEEVLADPHKQNEKSALQEWSQGQGLNKPIYTIKE 202

Query: 180 RSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            S    D  RF   V I      +G   S++ A++ AA E LK+ 
Sbjct: 203 ISKQHGDLKRFYCTVHIQNDFRGEGWGSSRKKAQKEAAKEALKKL 247


>gi|172060069|ref|YP_001807721.1| ribonuclease III [Burkholderia ambifaria MC40-6]
 gi|171992586|gb|ACB63505.1| Ribonuclease III [Burkholderia ambifaria MC40-6]
          Length = 425

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/202 (32%), Positives = 98/202 (48%), Gaps = 6/202 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F   
Sbjct: 4   SQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKL 60

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A+
Sbjct: 61  DEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAIIGAV 120

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LDGG E A   + + +             +DAKT LQE+        P Y V    G  
Sbjct: 121 FLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAA 180

Query: 185 HDPRFTVVVEISGL-APAQGMD 205
           H+ +F V   +  L     G  
Sbjct: 181 HNQQFEVECTVPKLDVKVSGSG 202


>gi|115351064|ref|YP_772903.1| ribonuclease III [Burkholderia ambifaria AMMD]
 gi|115281052|gb|ABI86569.1| RNAse III [Burkholderia ambifaria AMMD]
          Length = 425

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/202 (32%), Positives = 98/202 (48%), Gaps = 6/202 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F   
Sbjct: 4   SQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKL 60

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A+
Sbjct: 61  DEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAIIGAV 120

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LDGG E A   + + +             +DAKT LQE+        P Y V    G  
Sbjct: 121 FLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAA 180

Query: 185 HDPRFTVVVEISGL-APAQGMD 205
           H+ +F V   +  L     G  
Sbjct: 181 HNQQFEVECTVPKLDVKVSGSG 202


>gi|159904268|ref|YP_001551612.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9211]
 gi|159889444|gb|ABX09658.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9211]
          Length = 249

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +      ++K   Y     ++  +ALTH+S +   + ++ERLEFLGD +L L  S  +  
Sbjct: 27  NKSNLEFIKKSKSYC---LNIFNEALTHTSTNS--KTNHERLEFLGDAVLRLAASEYIEE 81

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS--FMTSIQADVV 119
           +F + K G+ S     LVS E  ++V +E+++  F+ +     KD  +   + +   + +
Sbjct: 82  NFPNLKVGDRSALRAQLVSDEWLTKVGQEINIKQFMLIGPKAHKDKAASATLQAEATEAM 141

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
              +     D                +++     R ++K+ LQEW+       P YK   
Sbjct: 142 IGALYECLKDIKSIKVWLKPYWDKTSKSVLEDPHRLNSKSALQEWSQGNGLDIPIYKNEE 201

Query: 180 RSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            S    DPR F   V I+     +G   S++ AE+ AA + L + 
Sbjct: 202 LSQKHGDPRRFFCKVLINKKILGEGWGSSRKQAEKEAALKALNKL 246


>gi|227892635|ref|ZP_04010440.1| ribonuclease III [Lactobacillus ultunensis DSM 16047]
 gi|227865567|gb|EEJ72988.1| ribonuclease III [Lactobacillus ultunensis DSM 16047]
          Length = 228

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 10/214 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++ + L+      F N  LLE+A THSS S+ + +     YE+LEFLGD +L L +
Sbjct: 1   MVSTKFLNKLKDEYNIEFNNEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ H+    EGEL+   +++V  E  S+ A E      I + +   K       ++ 
Sbjct: 61  SDYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARKRKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            DV E+   AL+LD G+     F+         K             +    + G     
Sbjct: 121 EDVFEAFNGALFLDQGMPAVQHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVDIE 180

Query: 176 KVT--FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                    P H   F V ++I+     QG   +
Sbjct: 181 YTVVSESQLPSH---FVVELKINDKVQTQGEGHN 211


>gi|28493529|ref|NP_787690.1| ribonuclease III [Tropheryma whipplei str. Twist]
 gi|81437751|sp|Q83FY2|RNC_TROWT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101654|sp|Q83I82|RNC_TROW8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28476571|gb|AAO44659.1| ribonuclease III [Tropheryma whipplei str. Twist]
          Length = 223

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/214 (28%), Positives = 95/214 (44%), Gaps = 9/214 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M  +    L ++         LL  A  H S S      ++ ERLEFLGD +LGL++S  
Sbjct: 1   MDGVD-ELLLRKFNLTLP-PGLLRTAFVHKSFSFENGACQNNERLEFLGDAVLGLVVSHY 58

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF       EG+LS   + +VS  + +Q+A+EL+L  F+ +    +       TS+ AD+
Sbjct: 59  LFETCPEYTEGQLSAARSYIVSGTSIAQIAKELNLGQFMLLGKGEKLAGGMDKTSLLADL 118

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +ESLI A+ +D G E A  FV     ++  + G+F  D      +        T      
Sbjct: 119 LESLIGAVMVDQGFESARDFVLALVGEKLRQVGEFSVDDPKTKLQKLTR----TQLVYEV 174

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
              GP H   F   V ++      G   SK+ A+
Sbjct: 175 VTEGPPHSRTFKASVIVNEKRFF-GQGSSKKQAQ 207


>gi|289178059|gb|ADC85305.1| Ribonuclease III [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 270

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 6/205 (2%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL +ALTH S SH ++  ++YERLEFLGD +L  +++  LF  +    EG+L+      
Sbjct: 41  DLLVEALTHRSFSHEHEGVKNYERLEFLGDAVLEFVVTETLFKQYPDKSEGQLAKIRAKA 100

Query: 79  VSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           VS E+ S +AR  L +  +I +     +   +  +SI  D+VESLI A ++  G++ A  
Sbjct: 101 VSEESLSAIARDRLHVGPYILLGHGESEQGGAEKSSILCDIVESLIGATFVQYGVDKARE 160

Query: 138 FVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            V        A  + +               + G+          GP++   FT    + 
Sbjct: 161 VVHHLVDDTLAEVATEGPALDWKTSLTVKAHEMGLPEPRYQMSVGGPEYALEFTAFAMLG 220

Query: 197 G--LAPAQGMDCSKRAAEQVAAAEV 219
                   G   SKR A+  AA + 
Sbjct: 221 DSKEVLGVGNGSSKRKAQLAAAEQA 245


>gi|183601845|ref|ZP_02963214.1| ribonuclease III [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682760|ref|YP_002469143.1| ribonuclease III [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190336|ref|YP_002967730.1| ribonuclease III [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195742|ref|YP_002969297.1| ribonuclease III [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218730|gb|EDT89372.1| ribonuclease III [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620410|gb|ACL28567.1| ribonuclease III [Bifidobacterium animalis subsp. lactis AD011]
 gi|240248728|gb|ACS45668.1| ribonuclease III [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250296|gb|ACS47235.1| ribonuclease III [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793323|gb|ADG32858.1| ribonuclease III [Bifidobacterium animalis subsp. lactis V9]
          Length = 258

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 6/205 (2%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL +ALTH S SH ++  ++YERLEFLGD +L  +++  LF  +    EG+L+      
Sbjct: 29  DLLVEALTHRSFSHEHEGVKNYERLEFLGDAVLEFVVTETLFKQYPDKSEGQLAKIRAKA 88

Query: 79  VSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           VS E+ S +AR  L +  +I +     +   +  +SI  D+VESLI A ++  G++ A  
Sbjct: 89  VSEESLSAIARDRLHVGPYILLGHGESEQGGAEKSSILCDIVESLIGATFVQYGVDKARE 148

Query: 138 FVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            V        A  + +               + G+          GP++   FT    + 
Sbjct: 149 VVHHLVDDTLAEVATEGPALDWKTSLTVKAHEMGLPEPRYQMSVGGPEYALEFTAFAMLG 208

Query: 197 G--LAPAQGMDCSKRAAEQVAAAEV 219
                   G   SKR A+  AA + 
Sbjct: 209 DSKEVLGVGNGSSKRKAQLAAAEQA 233


>gi|254245911|ref|ZP_04939232.1| Ribonuclease III [Burkholderia cenocepacia PC184]
 gi|124870687|gb|EAY62403.1| Ribonuclease III [Burkholderia cenocepacia PC184]
          Length = 350

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 19  MPSSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 75

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 76  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 135

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 136 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 195

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 196 GAAHNQQFEVECTVPKLDVKVSGSG 220


>gi|170732444|ref|YP_001764391.1| ribonuclease III [Burkholderia cenocepacia MC0-3]
 gi|169815686|gb|ACA90269.1| Ribonuclease III [Burkholderia cenocepacia MC0-3]
          Length = 409

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPSSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|107022210|ref|YP_620537.1| ribonuclease III [Burkholderia cenocepacia AU 1054]
 gi|116689156|ref|YP_834779.1| ribonuclease III [Burkholderia cenocepacia HI2424]
 gi|105892399|gb|ABF75564.1| RNAse III [Burkholderia cenocepacia AU 1054]
 gi|116647245|gb|ABK07886.1| RNAse III [Burkholderia cenocepacia HI2424]
          Length = 409

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPSSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|253999489|ref|YP_003051552.1| ribonuclease III [Methylovorus sp. SIP3-4]
 gi|313201514|ref|YP_004040172.1| ribonuclease III [Methylovorus sp. MP688]
 gi|253986168|gb|ACT51025.1| ribonuclease III [Methylovorus sp. SIP3-4]
 gi|312440830|gb|ADQ84936.1| ribonuclease III [Methylovorus sp. MP688]
          Length = 224

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/202 (33%), Positives = 96/202 (47%), Gaps = 6/202 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ +G+ F N  LL +ALTH S S     + ERLEFLGD +L  +I+  LF  F    E
Sbjct: 6   LERLLGHDFTNGQLLTQALTHRSHS---ARNNERLEFLGDGVLNCIIANQLFQRFSKLPE 62

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     LV   T  ++A+ L L   +++     K       S+ AD +E++I A++L
Sbjct: 63  GDLSRLRAHLVKEPTLCEIAQRLQLGDMLKLGEGELKSGGWRRPSVLADALEAIIGAVFL 122

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G   A   V + +     A+      +DAK+ LQE+   +    PEY VT   G  H 
Sbjct: 123 DAGFIAAEALVVRLYTPLLEAIDPKSIGKDAKSLLQEYLQGRKIALPEYTVTATEGEAHC 182

Query: 187 PRFTVVVEISGLAPAQ-GMDCS 207
             F V   I  L     G   S
Sbjct: 183 QLFKVDCTIPKLKLVTHGEGSS 204


>gi|312376926|gb|EFR23879.1| hypothetical protein AND_11908 [Anopheles darlingi]
          Length = 994

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 88/273 (32%), Gaps = 54/273 (19%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   E+ +GY F +RS L +A+TH+S S +   + Y+RLEFLGD IL  LI+  L+    
Sbjct: 711 FEVFERSLGYHFQDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRR 770

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               G L+   ++LV+    + +A       +    S   ++V      IQ +    +  
Sbjct: 771 QHSPGALTDLRSALVNNTIFAALAVRHGFHRYFLHLSPGLQEVIDRFVRIQQENGHRITE 830

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--------------------RDAKTELQEW 164
             Y     +      D  +     +    +                     ++       
Sbjct: 831 EEYYLPDEDDDMLAADGGFGGGFGEIEGGQALMGSGEAEDVEVPKALGDVFESIAGAIFL 890

Query: 165 AHAKFGVTPEYKVTFRSGPDHDP---------------------------------RFTV 191
                  T         GP+ +                                  R  V
Sbjct: 891 DSGMSLNTVWKVYRKMMGPEIEKFSSSVPKSPIRELLEMEPETAKFGKPEKLADGRRVRV 950

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            VE+ G    +G+  + R A+  AA   L++  
Sbjct: 951 TVEVFGKGTFRGIGRNYRIAKCTAAKCALRQLK 983



 Score = 42.2 bits (97), Expect = 0.059,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
            +++ +ALT S+ +     + ERLE +GD  L   I+T L+  +D+  EG+LS   +  V
Sbjct: 377 PAIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCRYDNVHEGKLSHLRSKQV 434

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           S     ++ R   L   +  +     D            +E
Sbjct: 435 SNLNLYRLGRRKRLGDCMIAAKFEPHDNWLPPCYYVPKELE 475


>gi|28572359|ref|NP_789139.1| ribonuclease III [Tropheryma whipplei TW08/27]
 gi|28410490|emb|CAD66876.1| ribonuclease III [Tropheryma whipplei TW08/27]
          Length = 215

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 90/195 (46%), Gaps = 7/195 (3%)

Query: 20  RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             LL  A  H S S      ++ ERLEFLGD +LGL++S  LF       EG+LS   + 
Sbjct: 10  PGLLRTAFVHKSFSFENGACQNNERLEFLGDAVLGLVVSHYLFETCPEYTEGQLSAARSY 69

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           +VS  + +Q+A+EL+L  F+ +    +       TS+ AD++ESLI A+ +D G E A  
Sbjct: 70  IVSGTSIAQIAKELNLGQFMLLGKGEKLAGGMDKTSLLADLLESLIGAVMVDQGFESARD 129

Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
           FV     ++  + G+F  D      +        T         GP H   F   V ++ 
Sbjct: 130 FVLALVGEKLRQVGEFSVDDPKTKLQKLTR----TQLVYEVVTEGPPHSRTFKASVIVNE 185

Query: 198 LAPAQGMDCSKRAAE 212
                G   SK+ A+
Sbjct: 186 KRFF-GQGSSKKQAQ 199


>gi|319763845|ref|YP_004127782.1| ribonuclease iii [Alicycliphilus denitrificans BC]
 gi|330823891|ref|YP_004387194.1| ribonuclease 3 [Alicycliphilus denitrificans K601]
 gi|317118406|gb|ADV00895.1| ribonuclease III [Alicycliphilus denitrificans BC]
 gi|329309263|gb|AEB83678.1| Ribonuclease 3 [Alicycliphilus denitrificans K601]
          Length = 228

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 107/208 (51%), Gaps = 6/208 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       L++R+ + F++ SLL++A+TH S S    +  ERLEFLGD +L L +S+LLF
Sbjct: 1   MPPDSLPALQQRLQHMFSDPSLLQRAVTHRSFS---ADHNERLEFLGDSVLNLAVSSLLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EGELS     LV  E+   +A  L L   +R+     +       SI AD +E
Sbjct: 58  KRMQGLPEGELSRVRALLVRQESLHGIAVRLQLPQVLRLGEGESRSGGKMRPSILADALE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G E A   V + ++  + + +  +  +DAKT LQEW   +    P+Y+V 
Sbjct: 118 AVIGAVYLDAGYEQAQALVHRLFEGVELSPRLQEAAKDAKTALQEWLQGRKMSLPQYRVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMD 205
             +G  H   F V  E+  L  A+ G  
Sbjct: 178 QTTGVAHKQVFHVACEVPALQLAERGSG 205


>gi|167645701|ref|YP_001683364.1| ribonuclease III [Caulobacter sp. K31]
 gi|189043302|sp|B0T3I0|RNC_CAUSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|167348131|gb|ABZ70866.1| Ribonuclease III [Caulobacter sp. K31]
          Length = 232

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 121/206 (58%), Gaps = 3/206 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63
            + LE+RIG+ FA+R LLE ALTH+S+    ++    E LEF+GDR+LGLL +  L   F
Sbjct: 8   VADLERRIGHTFADRKLLELALTHASVGDGAKKAGDNEVLEFIGDRVLGLLAAEALAERF 67

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             AKEGEL+ R N+LVS ETC++VAR  ++   +R+S+   K       SI A   E+L+
Sbjct: 68  PKAKEGELAPRLNALVSRETCARVARGAEMGPALRLSASSSKIGGRETDSILAGAAEALM 127

Query: 124 AALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AALY DGG+E+A       +  +  L +    RD KT LQEWA ++    P Y V  R G
Sbjct: 128 AALYRDGGLELARRVFLDLWAGEFDLANQGKPRDPKTALQEWAQSQGKPLPTYAVKDRKG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSK 208
           PDH P FTV V + GL P      S+
Sbjct: 188 PDHAPMFTVQVTVVGLDPVFAEGRSR 213


>gi|154283385|ref|XP_001542488.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150410668|gb|EDN06056.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1359

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 78/232 (33%), Gaps = 15/232 (6%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
              +  R+GY F    LL  A TH+S   ++     Y+RLEFLGD +L ++    L++H+ 
Sbjct: 1097 KQIGNRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYP 1156

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                  L+    ++VS +    V  +L L   +   S+      +         V     
Sbjct: 1157 DRDPQWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESAD 1216

Query: 125  ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            +             +    +            +   ++++         E    + +  +
Sbjct: 1217 SPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQYFEDMSIYDAFAN 1276

Query: 185  H-------------DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                          +PR    V +     AQG+  S R A+  A+   L + 
Sbjct: 1277 KHPTAGEVQMVDSTEPRIYAAVIVHDKFVAQGIASSVRYAKTKASDAALAKL 1328



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 12/92 (13%)

Query: 21  SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            L  +ALT        H            ++YERLEFLGD  L +  S  LF       E
Sbjct: 903 HLALEALTKDSDNTEEHRKEQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDE 962

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            +  V+   L+  +     A  L L  F+R  
Sbjct: 963 FDFHVKRMCLICNQNLFNTAVRLKLYEFVRTQ 994


>gi|119476421|ref|ZP_01616772.1| ribonuclease III [marine gamma proteobacterium HTCC2143]
 gi|119450285|gb|EAW31520.1| ribonuclease III [marine gamma proteobacterium HTCC2143]
          Length = 229

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 71/204 (34%), Positives = 108/204 (52%), Gaps = 6/204 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L +++G+ F + SL++ AL+H S+     ++ ERLEFLGD I+  L++  LF  F   +E
Sbjct: 11  LIQKLGHEFNDPSLVDLALSHRSVG---AKNNERLEFLGDSIVNFLMAEALFQKFPECRE 67

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS     LV  ET +++A+E  +   + +     K       SI AD VE+LI A+YL
Sbjct: 68  GELSQMRAQLVKGETLAEIAKEFSVGEHLNLGPGELKSGGYRRESILADAVEALIGAIYL 127

Query: 129 DGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           DGG+      V ++++ R          +DAKT LQEW  A+    P+Y +   SG DH 
Sbjct: 128 DGGMAACNEHVPRWFESRLDLISPRNSNKDAKTRLQEWLQARKMPLPQYVLINTSGSDHQ 187

Query: 187 PRFTVVVEISG-LAPAQGMDCSKR 209
            +FT+  +I        G   S+R
Sbjct: 188 QQFTIECDIHHLQQRFTGDGSSRR 211


>gi|255577153|ref|XP_002529460.1| ribonuclease III, putative [Ricinus communis]
 gi|223531076|gb|EEF32926.1| ribonuclease III, putative [Ricinus communis]
          Length = 342

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 104/245 (42%), Gaps = 28/245 (11%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +   S +EK + Y F N+ L+E+ALTHSS   +   +Y+RLEF+GD  LGL +S  +
Sbjct: 1   MEASSSISAVEKILNYTFKNKQLVEEALTHSSY--TASPNYQRLEFIGDAALGLALSNHV 58

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-------- 111
           F  +     G LS+   + +S E  ++VA +  L  F+R ++    D             
Sbjct: 59  FLAYPDLDPGHLSLLRAANISTEKLARVAVKHGLFRFLRHNATALDDKVKEFSDAVLREE 118

Query: 112 ------------TSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAK 158
                         + AD+VES+ AA+Y+D   ++     + +   +  +     ++  +
Sbjct: 119 DEAVAHGGTVKAPKVLADIVESVAAAVYVDVNFDLQRLWVIFRGLLEPIVTPEDLQQQPQ 178

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
                +   +        V ++SG  +       + + G   A G    K  A+  AA  
Sbjct: 179 PMTMLFELCQKKGKEVDIVHWKSGTKN----IASIYVDGGFVASGSSEQKETAKLNAAKG 234

Query: 219 VLKRE 223
            L++ 
Sbjct: 235 ALQKL 239



 Score = 39.5 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSK-RAAEQ 213
           K +L E    K    P Y +   +GP H+ ++   V+I    G+   +G +  + + A+ 
Sbjct: 267 KRKLHELCGKKKWPKPTYNIEKETGPSHEKKYVCSVQIATVDGVLYMRGDEKMRVKEADN 326

Query: 214 VAAAEVLKRE 223
            AA+ +++  
Sbjct: 327 SAASLMIRAL 336


>gi|321309555|ref|YP_004191884.1| ribonuclease III [Mycoplasma haemofelis str. Langford 1]
 gi|319801399|emb|CBY92045.1| ribonuclease III [Mycoplasma haemofelis str. Langford 1]
          Length = 229

 Score =  100 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 92/225 (40%), Gaps = 12/225 (5%)

Query: 2   SALRYST-LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLIST 57
           S L     L K  G    +++L  KA THSS    + +++  YE+LEFLGD ++GL I++
Sbjct: 3   SKLSLEEFLNKSFGLTIKDKNLFTKAFTHSSYKGCNPNFKGDYEKLEFLGDSVIGLSIAS 62

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF    S      S   + +VS  + + V R+LD  ++IRV +           SI  D
Sbjct: 63  ELFKRDISLGAISTSK--DQIVSGSSLAYVGRKLDFHNYIRVGNSCCV----ISDSIIED 116

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           V E+ I A+Y + G E A   V        L                   +         
Sbjct: 117 VYEAFIGAVYCEFGFETARKIVLSSLWNYFLMGELDFYFDYKTKLNTLVGQKYKGKVTYT 176

Query: 178 TFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              S P  D    F V    +  + + G+  + + AEQ AA + L
Sbjct: 177 LIDSFPSKDGSTTFKVSASWNNDSLSIGLGTTLKKAEQAAAQDAL 221


>gi|157285013|gb|ABV31246.1| dicer-like 4 [Physcomitrella patens]
          Length = 1445

 Score =  100 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 87/250 (34%), Gaps = 31/250 (12%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH-- 62
            + S LE  + Y F N+ LL +ALTH+S      + Y+RL FLGD +L  LI+   + +  
Sbjct: 1173 KVSELEILLNYKFQNKGLLVEALTHASCRRHSGDCYQRLGFLGDAVLDFLITKHFYANSA 1232

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++ V+ E  ++VA   +L  ++  +S                 V +L
Sbjct: 1233 NLKRDPGLLTDLRSAAVNNECFARVAVRHNLHLYLLHNSSDLAARVDKYVHGSTTDVCAL 1292

Query: 123  IAALYLDGGIEVAGTF---------------VDKYWKQRALKSGKFRRDAKTELQEWAHA 167
              A  L   +  +                     Y         K               
Sbjct: 1293 SEAFLLSKHLSCSSMQVLSDLVESLAGAVFLDSGYKLDTVWNVFKQLLKPLVTPATLRLE 1352

Query: 168  KFGVTPEYKVTFRSGPDHDPR-------F--TVVVEISGLAPAQGMDCSK---RAAEQVA 215
                  E   T + G  +  +       F  TV VE+       G+   K   ++A +VA
Sbjct: 1353 PIRELWELCQTEKFGEPNYKKKREAMGDFDMTVTVELKDETI-TGVGR-KPDEKSARKVA 1410

Query: 216  AAEVLKREGI 225
            A + L+   +
Sbjct: 1411 AIQALETLKV 1420


>gi|313768121|ref|YP_004061552.1| hypothetical protein BpV1_122 [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599728|gb|ADQ91749.1| hypothetical protein BpV1_122 [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 242

 Score =  100 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 4/218 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLF 60
           +   ++E  +G       L +KA  H SI    +    S+E LEF+GD +LG +I+  LF
Sbjct: 3   IDRQSVELLVGTKITKLDLYQKAFRHKSILKEDESLDGSFETLEFIGDSVLGFVITKFLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + +++ +EG L+     LV  ET + +A +L L +++++     ++       I  DV E
Sbjct: 63  DRYENRQEGFLTKARTKLVRGETLADIATKLGLYNWVQMDEKGMRNEWFKNPKILEDVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +L+ A+Y+D G+  A  F+   +      +           ++               +R
Sbjct: 123 ALVGAIYMDLGLLHAKQFILNIYTNPEYVNMNSIMVD-DNFKDHLMRHCQTNNLSLPEYR 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
                +  F + V +  +   +G   +K+ AEQ AA  
Sbjct: 182 VLNHENGIFYIDVYVDNVFLGRGHAKNKKQAEQHAAKR 219


>gi|17511264|gb|AAK68755.2| Unknown protein [Arabidopsis thaliana]
 gi|20148705|gb|AAM10243.1| unknown protein [Arabidopsis thaliana]
          Length = 391

 Score =  100 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 29/244 (11%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M ++    +EK + Y F+N+SLL++A+TH+S +     SYERLEF+GD  +GL IS  L+
Sbjct: 57  MESM--EAVEKILNYKFSNKSLLKEAVTHTSCTD--FPSYERLEFIGDSAIGLAISNYLY 112

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111
             + S +  +LS+   + VS E  ++V+    L SF+R ++    +              
Sbjct: 113 LTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDD 172

Query: 112 -----------TSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKT 159
                        + AD+ ESL  A+Y+D   ++     + +   +  +     ++  + 
Sbjct: 173 LSVSYGGLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQP 232

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
               +              ++ G         V+ +     A G   +K  A  +AA E 
Sbjct: 233 VSMLFKLCHKHKKRIDIKNWKDGN----VSIAVIYLDDELLASGRAENKDIARLIAAKEA 288

Query: 220 LKRE 223
           L++ 
Sbjct: 289 LRKL 292


>gi|315038614|ref|YP_004032182.1| ribonuclease III [Lactobacillus amylovorus GRL 1112]
 gi|312276747|gb|ADQ59387.1| ribonuclease III [Lactobacillus amylovorus GRL 1112]
          Length = 228

 Score =  100 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 88/214 (41%), Gaps = 10/214 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++   L+      F N  LLE+A THSS S+ + +     YE+LEFLGD +L L +
Sbjct: 1   MVSTKFLKKLKDEYNVKFNNEKLLEEAFTHSSYSNEHPDAGIRDYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ H+    EGEL+   +++V  E  S+ A E      I + +   K       ++ 
Sbjct: 61  SNYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARNRKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            DV E+   ALYLD G+     F+         K             +    + G     
Sbjct: 121 EDVFEAFNGALYLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVNIE 180

Query: 176 KVTFRSG--PDHDPRFTVVVEISGLAPAQGMDCS 207
                    P H   F V ++I+  A  +G   +
Sbjct: 181 YSVISESQLPSH---FEVELKINDEAKTRGEGHN 211


>gi|325299342|ref|YP_004259259.1| Ribonuclease 3 [Bacteroides salanitronis DSM 18170]
 gi|324318895|gb|ADY36786.1| Ribonuclease 3 [Bacteroides salanitronis DSM 18170]
          Length = 325

 Score =  100 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
             +  G+   N  + ++AL H S S   ++    + ERLEFLGD IL  +++ +++  F+
Sbjct: 23  FYRMTGFYPRNIDIYKQALLHKSSSIKNEKGRLLNNERLEFLGDAILDAVVADIVYKRFE 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ET + +A ++ L   ++ ++           +    ++ +L  
Sbjct: 83  KKREGFLTNTRSKIVQRETLNHIAVQIGLDKLVKFTTRQSSHNSYMGGNAFEALIGALYL 142

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
                   +     +   +      S K        ++     KF +             
Sbjct: 143 DRGYRACKKFMEERIISQYLDIDKLSRKEVNFKSKLIEWSQKNKFQIAFNLVNQSLDDEL 202

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            +P F   + +  +    G   SK+ ++Q AA E LK+  
Sbjct: 203 -NPIFNTQILVENVPAGTGKGYSKKESQQEAAHETLKKIK 241


>gi|303236120|ref|ZP_07322722.1| ribonuclease III [Prevotella disiens FB035-09AN]
 gi|302483702|gb|EFL46695.1| ribonuclease III [Prevotella disiens FB035-09AN]
          Length = 293

 Score =  100 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y ++   IG    N    + AL H S++   ++    + ERLEFLGD IL  ++  ++F 
Sbjct: 20  YLSIYHIIGILPHNLEYYKTALLHKSVARRNEKGRPINNERLEFLGDAILDAIVGDIVFQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + +V  +T +++A+++ +   I  S+       S++     + +  
Sbjct: 80  HFSGKREGFLTNTRSKIVQRDTLNRLAKDMGITRLIL-SNGRSASHNSYLGGNAFEALVG 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            +   +     +               K      + K++L EW            + F  
Sbjct: 139 ALYLDHGYNACKKFMQKQILGELINIDKVAYKEVNFKSKLLEWTQKHKVEIEFKPLNFGK 198

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             D +P F+  V +  +A  +G   SK+ ++Q AA E ++R 
Sbjct: 199 DSDGNPTFSFQVILENIACGEGKGYSKKESQQEAAKETMQRI 240


>gi|325957095|ref|YP_004292507.1| ribonuclease III [Lactobacillus acidophilus 30SC]
 gi|325333660|gb|ADZ07568.1| ribonuclease III [Lactobacillus acidophilus 30SC]
 gi|327183818|gb|AEA32265.1| ribonuclease III [Lactobacillus amylovorus GRL 1118]
          Length = 228

 Score =  100 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 88/214 (41%), Gaps = 10/214 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++   L+      F N  LLE+A THSS S+ + +     YE+LEFLGD +L L +
Sbjct: 1   MVSTKFLKKLKDEYNVKFNNEKLLEEAFTHSSYSNEHPDAGIRDYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ H+    EGEL+   +++V  E  S+ A E      I + +   K       ++ 
Sbjct: 61  SNYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARSRKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            DV E+   ALYLD G+     F+         K             +    + G     
Sbjct: 121 EDVFEAFNGALYLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVNIE 180

Query: 176 KVTFRSG--PDHDPRFTVVVEISGLAPAQGMDCS 207
                    P H   F V ++I+  A  +G   +
Sbjct: 181 YSVISESQLPSH---FEVELKINDEAKTRGEGHN 211


>gi|283131646|dbj|BAI63215.1| Dicer [Hemicentrotus pulcherrimus]
          Length = 1816

 Score =  100 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 92/254 (36%), Gaps = 39/254 (15%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   EK I Y F +R+ L +A THSS   +S  + Y+RLEFLGD +L  LI+  L++H  
Sbjct: 1562 YDGFEKTINYRFKDRAYLLQAFTHSSYHRNSITDCYQRLEFLGDALLDYLITRHLYDHHT 1621

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111
            +   G L+   ++LV+    + +A + +   + +  +     V                 
Sbjct: 1622 NLSPGALTDLRSALVNNTIFASLAVKFNFHKYFKAYTANMFQVIDNFVTFVDAKNEALGM 1681

Query: 112  ---------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
                                      D+ ES+  A+YLD G+ +   +   Y   +    
Sbjct: 1682 DSQLKYSEMDGEQEESEDIEVPKALGDIFESVAGAIYLDSGMSLNAVWKVYYPMMKQQIE 1741

Query: 151  GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                    + ++E    +                 D +  V V + G    +G+  +   
Sbjct: 1742 QYASDLPISPVRELLEMEPETARFGPPEKTI----DGKTRVTVNVVGKGQFKGIGRNYHI 1797

Query: 211  AEQVAAAEVLKREG 224
            A+  AA   L+   
Sbjct: 1798 AKATAARFALRHLK 1811


>gi|313678609|ref|YP_004056349.1| ribonuclease III [Mycoplasma bovis PG45]
 gi|312950171|gb|ADR24766.1| ribonuclease III [Mycoplasma bovis PG45]
          Length = 224

 Score = 99.6 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 102/224 (45%), Gaps = 4/224 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLL 59
           M+++       +      +  +  +A TH SS +++  ++Y+ LEFLGD IL   +S +L
Sbjct: 1   MNSI--ENFLNQFNIKANSLLVYRQAFTHGSSAANAKNKNYQTLEFLGDAILQFYVSAIL 58

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           FN F    +G+L++    LV  ++ + +A  L L  F+ +SS++  +       + AD+ 
Sbjct: 59  FNVFKDKNQGQLTLIRAKLVCTDSLNSIADRLKLKDFLLLSSNVVANEVLSSKKVGADIF 118

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ESL+AA+++D G+     F+DK       +  + + + K             + +     
Sbjct: 119 ESLVAAIFIDQGMPKVKEFLDKTLLPLVKQYKEGKIELKDSKTRLQEYMQSFSKKTVFYQ 178

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               D++  F       G     G+  SK  AE+ AA + L + 
Sbjct: 179 TYQSDNNQ-FKSEAIYEGNVYGSGLGKSKHEAEENAANDALNKL 221


>gi|307730527|ref|YP_003907751.1| ribonuclease III [Burkholderia sp. CCGE1003]
 gi|307585062|gb|ADN58460.1| ribonuclease III [Burkholderia sp. CCGE1003]
          Length = 420

 Score = 99.6 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPSSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYELAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A T + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLEVKVSGSG 202


>gi|162449970|ref|YP_001612337.1| ribonuclease III [Sorangium cellulosum 'So ce 56']
 gi|161160552|emb|CAN91857.1| ribonuclease III [Sorangium cellulosum 'So ce 56']
          Length = 275

 Score = 99.6 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 73/198 (36%), Positives = 104/198 (52%), Gaps = 7/198 (3%)

Query: 19  NRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           +   LE+ALTH S S+  +       +RLEFLGD +LGL ++ LL   F  A+EGELS+ 
Sbjct: 17  DLPHLEEALTHPSFSNEQRGGRRVDNQRLEFLGDAVLGLCVTELLMERFPGAREGELSMM 76

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
            ++LV+ +  +  AR ++L + +RV            T++ AD  E+L+AALYLD G E 
Sbjct: 77  RSALVNTDALAAWARGIELGAALRVGRGAEVAGERDQTNVLADATEALVAALYLDRGFES 136

Query: 135 AGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           A     K       +        RDAK+ELQE   A+   +P Y++    GPDHD  F V
Sbjct: 137 ARALSRKIAASPLAQLASGSLLGRDAKSELQERVQARGAASPRYRLMGTEGPDHDRAFLV 196

Query: 192 VVEISGLAPAQGMDCSKR 209
            VE+ G     G   SK+
Sbjct: 197 AVEVDGQVIGTGRGRSKK 214


>gi|42766|emb|CAA26504.1| unnamed protein product [Escherichia coli]
          Length = 227

 Score = 99.6 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 7/214 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI  ++LD  I+     +  +++ R  +     +    + +   + +   +    ++  
Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRPSAAADLSGS 177

Query: 181 SGPDHDPRFT----VVVEISGLAPAQGMDCSKRA 210
            G                +    P  G   S+R 
Sbjct: 178 PGTWSKRTIRNLLSTARSVGLSEPVVGTGSSRRK 211


>gi|189502546|ref|YP_001958263.1| hypothetical protein Aasi_1206 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497987|gb|ACE06534.1| hypothetical protein Aasi_1206 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 241

 Score = 99.6 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +         N SL   AL HSS +   + S ERLEFLGD +L L+++  LF  +   
Sbjct: 25  NAIYAITTLHPHNLSLYRLALQHSS-AKIEENSNERLEFLGDAVLSLVVAEYLFKKYPLQ 83

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG L+   + +V+  +  ++A+ + +   +    D R      +  +  + +E+ I A+
Sbjct: 84  EEGFLTEIRSRIVNRASLGELAKRIGMDELLTY--DTRSVNHHNIKFVYGNALEAFIGAV 141

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP--D 184
           YLD G  +   F+     +  +              +            +    +     
Sbjct: 142 YLDQGYALCAQFIVDRLLKIHVDLETIVLTDNNYKSKIIAWAQKNRKHIQFILITEKRIK 201

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               F V + + G    +G+  +K+ AEQ+AA E LKR 
Sbjct: 202 GVREFVVQLLLEGEVYGEGVGKTKKQAEQMAAQESLKRI 240


>gi|225159274|ref|ZP_03725574.1| Ribonuclease III [Opitutaceae bacterium TAV2]
 gi|224802127|gb|EEG20399.1| Ribonuclease III [Opitutaceae bacterium TAV2]
          Length = 250

 Score = 99.6 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 6/210 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62
            + L+ RIG+ F   +LLE A+TH S         ++ +RLE LGD +L LL++  L+  
Sbjct: 21  LAALQMRIGHKFTTPALLETAITHPSWLQDNPGAPDNNQRLELLGDAVLQLLLTHELYTL 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F + +EG LS R   L      +Q+ARE+ L + +R+S+   +       S   D  E+L
Sbjct: 81  FPTDREGPLSKRRAVLSRGGFLAQLAREVGLDTVLRLSASEEQTGGRQRDSALEDAFEAL 140

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
             ALYLD G++     +   +    ++  + +   + K  LQE      G       T  
Sbjct: 141 FGALYLDAGLDRTREVLRTLYGPLNVRLETTEDTDNPKGRLQERVQPLHGNQALRYETAH 200

Query: 181 -SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            SG DH   +   + +       G   SK+
Sbjct: 201 ISGQDHAREYESRLYVLEHQFGTGRGPSKK 230


>gi|296115041|ref|ZP_06833683.1| ribonuclease III [Gluconacetobacter hansenii ATCC 23769]
 gi|295978378|gb|EFG85114.1| ribonuclease III [Gluconacetobacter hansenii ATCC 23769]
          Length = 255

 Score = 99.6 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 80/219 (36%), Positives = 113/219 (51%), Gaps = 17/219 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----------------SYERLEFLGDR 49
           +  +E  +GY F N +LL +ALTH S +H                    S ERLEF+GDR
Sbjct: 22  FERIEAYVGYCFRNAALLHEALTHRSAAHQRSSAIGRRTRQSVARRGAGSNERLEFIGDR 81

Query: 50  ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
           +LGLL++  L   F   +EG L  R   LVS    + +A ++ L S + V+    +    
Sbjct: 82  VLGLLMAEWLLERFPDEQEGALGPRHAHLVSRAVLAHIAEDMALPSALDVAEHEARAGVR 141

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
            M ++ AD VE+++ A+YLDGG+E A  FV + W    +   +  +D KT LQEW  A+ 
Sbjct: 142 QMANVLADAVEAILGAIYLDGGLEPARAFVRRAWNNAIVAQARPPKDPKTALQEWVLARG 201

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
              P YKV    GP H PRF + VE SG    +G+  SK
Sbjct: 202 LPLPVYKVVSTDGPSHAPRFVISVEASGRR-GEGVAGSK 239


>gi|255565079|ref|XP_002523532.1| Ribonuclease III, putative [Ricinus communis]
 gi|223537239|gb|EEF38871.1| Ribonuclease III, putative [Ricinus communis]
          Length = 1633

 Score = 99.6 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 99/245 (40%), Gaps = 29/245 (11%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            ++  S+LE  + + F NR L+ +A  H S +      Y+RLEFLGD +L  LI++ LF+ 
Sbjct: 1204 SIDVSSLEDSLDHQFVNRGLVLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLFSV 1263

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL------------------- 103
            +   K G L+   ++LV+    + VA +     F+   S                     
Sbjct: 1264 YPKLKPGLLTDLRSALVNNRAFAIVAVDRSFNEFLICDSGNLSEAIETYVNFVKRPAVEK 1323

Query: 104  RKDVCSFMTSIQADVVESLIAALYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                      +  D+VES I A++LD G +      +   +    L S     +   EL 
Sbjct: 1324 DSLEGPKCPKVLGDLVESCIGAIFLDTGFDLNCIWKLMLSFLDPILNSSNVLLNPFRELH 1383

Query: 163  EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---AQGMDCSKRAAEQVAAAEV 219
            E+  +         +        D  F V  +++G      A   + +K+ A ++A+ ++
Sbjct: 1384 EFCESHKWKLQFPTLKR------DMNFLVEAKVTGKDICLDASANNSNKKEAIRIASEQI 1437

Query: 220  LKREG 224
            + +  
Sbjct: 1438 IVKLK 1442


>gi|58337573|ref|YP_194158.1| ribonuclease III [Lactobacillus acidophilus NCFM]
 gi|227904215|ref|ZP_04022020.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus
           ATCC 4796]
 gi|75432899|sp|Q5FJJ7|RNC_LACAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|58254890|gb|AAV43127.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus
           NCFM]
 gi|227868234|gb|EEJ75655.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus
           ATCC 4796]
          Length = 228

 Score = 99.6 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 10/214 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++ + L+      F N  LLE+A THSS S+ + +     YE+LEFLGD +L L +
Sbjct: 1   MVSTKFLNKLKNEYNIEFNNEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ H+    EGEL+   +++V  E  S+ A E      I + +   K       ++ 
Sbjct: 61  SNYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARNRKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            DV E+   AL+LD G+     F+         K             +    + G     
Sbjct: 121 EDVFEAFNGALFLDQGMPAVERFLHLTVYPLIAKGEFDDSRDYKTDLQELLQQNGPVNIE 180

Query: 176 KVTFRSG--PDHDPRFTVVVEISGLAPAQGMDCS 207
                    P H   F V ++I+     QG   +
Sbjct: 181 YSVISESQLPSH---FVVELKINDQVQTQGEGHN 211


>gi|323526859|ref|YP_004229012.1| ribonuclease III [Burkholderia sp. CCGE1001]
 gi|323383861|gb|ADX55952.1| ribonuclease III [Burkholderia sp. CCGE1001]
          Length = 475

 Score = 99.6 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPSSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A T + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|34497521|ref|NP_901736.1| ribonuclease III [Chromobacterium violaceum ATCC 12472]
 gi|81655793|sp|Q7NWC4|RNC_CHRVO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|34103376|gb|AAQ59738.1| ribonuclease III [Chromobacterium violaceum ATCC 12472]
          Length = 236

 Score = 99.6 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 65/212 (30%), Positives = 106/212 (50%), Gaps = 8/212 (3%)

Query: 1   MSALR--YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           M+ +   +  L + + YAF    LL +ALTH S S +   + ER EF+GD IL   ++ +
Sbjct: 1   MTQIDNRFRRLSQALDYAFQKPELLRQALTHRSYSSA---NNERFEFVGDSILNYTVARM 57

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L++ F    EGELS    +LV+  T +++A EL L  ++ +     K       SI AD 
Sbjct: 58  LYDQFPQLTEGELSRLRANLVNQNTLAEIAHELKLGDYLYLGEGELKSGGFNRPSILADA 117

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +E+  AA+  D     A   V + + QR   + + +  +DAKT LQE   A+    P+Y+
Sbjct: 118 LEATFAAVSFDADFAAAEQVVRRLYNQRVATIDTTRQAKDAKTRLQEALQARKLALPKYR 177

Query: 177 VTFRSGPDHDPRFTVVVEISGL-APAQGMDCS 207
           +  +SG  H+  F V  ++  +   + G   S
Sbjct: 178 ILSQSGEAHEQWFKVECDLGEMALISTGDGGS 209


>gi|268564825|ref|XP_002639240.1| C. briggsae CBR-DRSH-1 protein [Caenorhabditis briggsae]
 gi|74847096|sp|Q61XX9|RNC_CAEBR RecName: Full=Ribonuclease 3; AltName: Full=Protein drosha; AltName:
            Full=Ribonuclease III; Short=RNase III
 gi|187036021|emb|CAP24627.1| CBR-DRSH-1 protein [Caenorhabditis briggsae AF16]
          Length = 1061

 Score = 99.2 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 65/218 (29%), Positives = 100/218 (45%), Gaps = 13/218 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
             +  LE+ IG  F N  LL KA T  +   +   +   +RLE+LGD +L L+IS  L+ +
Sbjct: 810  DFHRLEQIIGIEFNNIRLLAKAFTRRNVPFNDLTKGHNQRLEWLGDSVLQLIISDYLYRN 869

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG +S+   SLVS +T S V  +L    F+  +              +AD+VE+ 
Sbjct: 870  FPLHHEGHMSLLRTSLVSNQTQSVVCDDLGFQEFVIKAP---HRKNDLKMKDKADLVEAF 926

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA------HAKFGVTPE 174
            I ALY+D G+E   +F+   +  R     + +   DAK+ LQ+W              PE
Sbjct: 927  IGALYVDKGLEYCRSFIRTVFCPRLKHFINSEKWNDAKSHLQQWCLAIRDSRNPNPAMPE 986

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            Y++    GP ++  F V V   G   +     +   AE
Sbjct: 987  YRLLGIQGPTNNRIFRVAVYFRGERLSSAAASNMHTAE 1024



 Score = 54.5 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 48/202 (23%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISH---------------------------- 34
               S  EK I Y F +R ++E AL HSS                               
Sbjct: 583 NFSLSVFEKVIEYKFNDRRIVELALIHSSFRSYYGTTPDHVKNMISNCGYRKKYGAEERR 642

Query: 35  --------------------SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
                                     ERLE+LGD ++ L+ S  LF   +   EG L+  
Sbjct: 643 EKKKGIISLFNIMGGETSGGEPILHNERLEYLGDAVVELIASHHLFFILNHHFEGGLATY 702

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             +LV     +++A    +   ++ +        +      A+  E+L+A ++LD GI  
Sbjct: 703 RTALVQNRNLAKLAMNCRIDEMLQFAHGADLINEAEWKHALANAFEALMAGVFLDSGIAP 762

Query: 135 AGTFVDKYWKQRALKSGKFRRD 156
                 K    +  +  K    
Sbjct: 763 CDAIFSKAMYGKDPEMKKVWDH 784


>gi|170017643|ref|YP_001728562.1| dsRNA-specific ribonuclease [Leuconostoc citreum KM20]
 gi|238688973|sp|B1N016|RNC_LEUCK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|169804500|gb|ACA83118.1| dsRNA-specific ribonuclease [Leuconostoc citreum KM20]
          Length = 233

 Score = 99.2 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 7/217 (3%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           MS   +   L       F N +LL +ALT  +  + + +     Y+RLEFLGD ++ + +
Sbjct: 1   MSQDSFKQYLLSEFNIQFNNETLLLEALTQRNYLNEHPDEPGRDYQRLEFLGDSVMQVSV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           +  LF  + +  EG+L+    ++V   + +  +R   L   IR+             S+ 
Sbjct: 61  AEYLFKRYPNWHEGQLTEMRIAMVQTRSFAHFSRVAHLNEGIRLGKGEEMSGARDRDSLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            D+ E+ I ALYLD G E    F+D+            R        +    K G     
Sbjct: 121 EDIWEAFIGALYLDQGFEAVRKFLDQTLFAAVDTDFFDRFIDFKSRLQEKLQKNGAVDID 180

Query: 176 KVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRA 210
             T        +   F   V +     A+G   S + 
Sbjct: 181 YRTENEQQLSHNAQLFEASVSVDDHELARGTGKSIKD 217


>gi|225684422|gb|EEH22706.1| dicer [Paracoccidioides brasiliensis Pb03]
          Length = 1469

 Score = 99.2 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 75/233 (32%), Gaps = 16/233 (6%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
              +  R+GY F    LL  A TH+S    + +   Y+RLEFLGD +L ++    L++ + 
Sbjct: 1202 QQIGDRLGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYP 1261

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                  L+    ++VS +    VA +L L   +   S       +             I 
Sbjct: 1262 DRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLLYFSKALLGQITRYAEEIEATETESID 1321

Query: 125  ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            +             +    +            +   ++++         E    + +  +
Sbjct: 1322 SPDFWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQQCLKKYFEDMSIYDTFAN 1381

Query: 185  HDP--------------RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              P              R    V I     A+G+  S   A+  A+   L + 
Sbjct: 1382 KHPTASGEVDSVDAAEHRVLAAVIIHDEFVAEGIASSAGYAKVKASENALSKL 1434



 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 12/93 (12%)

Query: 20   RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT        H +          ++YERLEFLGD  L +  S  LF       
Sbjct: 1007 PELALEALTKDSDNTEEHRAEQIHFQRGMGKNYERLEFLGDCFLKMSTSISLFAMNADDD 1066

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            E +  V+   L+  +     A  L +  F+R  
Sbjct: 1067 EFDFHVKRMCLICNQNLFNTAMSLGIYEFVRTQ 1099


>gi|311747672|ref|ZP_07721457.1| ribonuclease III [Algoriphagus sp. PR1]
 gi|126575659|gb|EAZ79969.1| ribonuclease III [Algoriphagus sp. PR1]
          Length = 250

 Score = 99.2 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 93/212 (43%), Gaps = 7/212 (3%)

Query: 19  NRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           N +L + ALT SS+     +    S ERLEFLGD ILG +++  LF  +    EG L+  
Sbjct: 39  NIALYKLALTPSSLGEETSKGFKISNERLEFLGDAILGAVVAEYLFQKYPYRDEGFLTET 98

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
            + LV+ E+ +    ++ L   + +    R  + +   S+  D++E+ + A+YLD G   
Sbjct: 99  RSKLVNRESLNATGVKIGLKKILNLEIGDRNFIGNK--SLYGDILEAFLGAVYLDKGYHF 156

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWA-HAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
              F+ K         G     +  + +      +     EYK+    G      F V +
Sbjct: 157 TKKFILKRILLHFDLDGMITTVSNYKSKIIEWSQRENKNIEYKILHVHGNQRFKEFIVAL 216

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           EI G   +QG   +K+ AEQ A+        I
Sbjct: 217 EIDGEEASQGKGPTKKKAEQEASKNACDELNI 248


>gi|161507714|ref|YP_001577671.1| ribonuclease III [Lactobacillus helveticus DPC 4571]
 gi|260101401|ref|ZP_05751638.1| ribonuclease III [Lactobacillus helveticus DSM 20075]
 gi|160348703|gb|ABX27377.1| Double stranded RNA-specific ribonuclease RNase [Lactobacillus
           helveticus DPC 4571]
 gi|260084741|gb|EEW68861.1| ribonuclease III [Lactobacillus helveticus DSM 20075]
 gi|323466305|gb|ADX69992.1| Double stranded RNA-specific ribonuclease RNase [Lactobacillus
           helveticus H10]
          Length = 228

 Score = 99.2 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 87/214 (40%), Gaps = 10/214 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++   L+      F N  LLE+A THSS S+ +       YE+LEFLGD +L L +
Sbjct: 1   MVSTKFLKKLKDEYSIEFNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ H+    EGEL+   +++V  E  S+ A E    + I + +   K       ++ 
Sbjct: 61  SDYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQNEIHLGNGEEKAGARKRKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            DV E+   AL+LD G+     F+         K             +    + G     
Sbjct: 121 EDVFEAFNGALFLDQGMPAVQHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVNIE 180

Query: 176 KVTFRSG--PDHDPRFTVVVEISGLAPAQGMDCS 207
                    P H   F V ++I+     QG   +
Sbjct: 181 YSVISESQLPPH---FVVELKINDQVQTQGEGHN 211


>gi|328905041|gb|AEB54796.1| dicer 2 [Litopenaeus vannamei]
          Length = 1502

 Score = 99.2 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 92/246 (37%), Gaps = 30/246 (12%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFD 64
               LEK+IGY F +RS + +A+THSS  ++   + Y+RLEFLGD +L  L++  +F  F 
Sbjct: 1239 LDRLEKKIGYTFRDRSFIVQAVTHSSYVNNQVTDCYQRLEFLGDAVLDYLVTCHIFCRFT 1298

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99
                G+LS   +  V  +T  + A +  L   +                           
Sbjct: 1299 DYSPGQLSDLRSYFVKNDTLGRAAAKGKLHQHLLHLNPKLEASIDKFLSILHQDPLGEEL 1358

Query: 100  --SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
                D++      +     D+VE++I A+YLD    +   +         L +   +   
Sbjct: 1359 NTEDDVQDCEDVEIPKALGDMVEAIIGAVYLDSNRSLKVAWQVIERILGDLLNTSIQTIQ 1418

Query: 158  KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
               +++      G      V           + V V+  G         + R A++  AA
Sbjct: 1419 LNPIRQLLEEVPGEKQVEFVKGEDDGSEKSTYVVKVK--GFGTFTASGKNYRVAKKKVAA 1476

Query: 218  EVLKRE 223
              LK  
Sbjct: 1477 IALKEI 1482



 Score = 41.5 bits (95), Expect = 0.094,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 57/200 (28%), Gaps = 12/200 (6%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A T    S   + + ERLE LGD  L  +    LF   +S  EG LS     LV  +T  
Sbjct: 1015 AFTLKEASEDKEFNLERLELLGDSFLKFVTGEALFLRDESYHEGRLSQSRGKLVCNKTLF 1074

Query: 86   QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
            ++A +  L   I       K   S          E  + +L +          V    K 
Sbjct: 1075 RLACQKGLEGKIAAKVLNPKKNGSIPGFRIKPEFEESLRSLEVPHDF---WHQVPNTVKD 1131

Query: 146  RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
                          +  +   A+   +     T     D      V   I       G  
Sbjct: 1132 VGDLKEAVFALMSDDASKDEKAEKKGSCYNPWTEHEVSDKSIADCVEAIIGAYLLVCG-- 1189

Query: 206  CSKRAAEQVAAAEVLKREGI 225
                     AAA  L   G+
Sbjct: 1190 -------NEAAAAFLHWLGV 1202


>gi|78211701|ref|YP_380480.1| RNAse III [Synechococcus sp. CC9605]
 gi|78196160|gb|ABB33925.1| Ribonuclease III [Synechococcus sp. CC9605]
          Length = 241

 Score = 99.2 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 68/212 (32%), Gaps = 12/212 (5%)

Query: 20  RSLLE---KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
             LL    +A+TH S       + ERLEFLGD +L L  +  +  H      G  S    
Sbjct: 24  PELLILVDQAMTHVS--SGRDRNLERLEFLGDAVLRLAATEFIDRHHADLTVGACSNLRA 81

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            LVS    + V   L +   +               S         +          +  
Sbjct: 82  QLVSDRWLADVGEALGIEEHLL--LGRHAQGDRSARSRLRADATEALIGALYTALGNLKA 139

Query: 137 TFVDKYWKQRALKS----GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTV 191
                     A          +   KT LQEW+  +    P Y     S    DP RF  
Sbjct: 140 IHRWLTPHWSATTQAVLATPHQFGGKTTLQEWSQGQGLGLPRYATEECSRQHGDPERFRC 199

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            V I G   A+    S++ AEQ AA   L+  
Sbjct: 200 QVSIQGRNLAEAKGRSRKEAEQNAATAALQAL 231


>gi|170695422|ref|ZP_02886567.1| Ribonuclease III [Burkholderia graminis C4D1M]
 gi|170139613|gb|EDT07796.1| Ribonuclease III [Burkholderia graminis C4D1M]
          Length = 421

 Score = 98.8 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPSSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + + +             +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|84498322|ref|ZP_00997119.1| ribonuclease III [Janibacter sp. HTCC2649]
 gi|84381822|gb|EAP97705.1| ribonuclease III [Janibacter sp. HTCC2649]
          Length = 249

 Score = 98.8 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 85/196 (43%), Gaps = 5/196 (2%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           + +LL +ALTH S ++        ERLEFLGD +LGL+++  L+       EG+L+    
Sbjct: 25  DVALLGRALTHRSYAYEAGGIPHNERLEFLGDSVLGLVVTDSLYVTHPDLTEGQLAKLRA 84

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           ++V+    + V R L L  ++ +             SI AD VE++I A Y   G+  AG
Sbjct: 85  AVVNMRALAAVGRTLGLGDYLHLGRGEESTGGRDKDSILADTVEAVIGATYCSAGLVAAG 144

Query: 137 TFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             V          S       D KT LQE             V    GP+H   F+  V 
Sbjct: 145 DLVHHLLDPLMASSATLGAGLDWKTSLQEICALHSAGPV-EYVLEEDGPEHSKTFSARVL 203

Query: 195 ISGLAPAQGMDCSKRA 210
           + G+    G+  +K+ 
Sbjct: 204 VGGVEHGSGVGRTKKD 219


>gi|327297344|ref|XP_003233366.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892]
 gi|326464672|gb|EGD90125.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892]
          Length = 1519

 Score = 98.8 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 34/251 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++ ++GY F    LL  A  H S          Y+RLEFLGD +L ++    LF  + 
Sbjct: 1236 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------------- 103
                  L+    ++VS +    +A  L+L   +   S+                      
Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355

Query: 104  ---RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155
                    +       D+VE+ + A+++D        +       +++ +       F  
Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFAN 1415

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT---VVVEISGLAPAQGMDCSKRAAE 212
                       A       Y +     P  D         V +     A+G+  S R A+
Sbjct: 1416 KHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTVRALAAVCVHDDIVAEGVASSPRHAK 1475

Query: 213  QVAAAEVLKRE 223
              A+   L+  
Sbjct: 1476 LKASQNALQIL 1486



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT  S                  ++YERLEFLGD  L +  S  LF       
Sbjct: 1040 PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1099

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            E +  V+   L+  +     A  L++  FIR
Sbjct: 1100 EYDYHVKRMLLICNQNLFNNAINLEIFKFIR 1130


>gi|302662009|ref|XP_003022664.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517]
 gi|291186623|gb|EFE42046.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517]
          Length = 1510

 Score = 98.8 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 34/251 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++ ++GY F    LL  A  H S          Y+RLEFLGD +L ++    LF  + 
Sbjct: 1227 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1286

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------------- 103
                  L+    ++VS +    +A  L+L   +   S+                      
Sbjct: 1287 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1346

Query: 104  ---RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155
                    +       D+VE+ + A+++D        +       +++ +       F  
Sbjct: 1347 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFAN 1406

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT---VVVEISGLAPAQGMDCSKRAAE 212
                       A       Y +     P  D         V +     A+G+  S R A+
Sbjct: 1407 KHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTVRALAAVCVHDDIVAEGVASSPRHAK 1466

Query: 213  QVAAAEVLKRE 223
              A+   L+  
Sbjct: 1467 LKASQNALQIL 1477



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 16/112 (14%)

Query: 1    MSALRYSTLE--KRIGYAFANRSLLEKALTHSS------------ISHSYQESYERLEFL 46
            M +     LE  +++        L  +ALT  S                  ++YERLEFL
Sbjct: 1012 MESY-LIALEACEKLQLKIP-PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFL 1069

Query: 47   GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            GD  L +  S  LF       E +  V+   L+  +     A  L++  FIR
Sbjct: 1070 GDCFLKMATSISLFAMNPDNDEYDYHVKRMLLICNQNLFNNAIILEIFKFIR 1121


>gi|302511053|ref|XP_003017478.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371]
 gi|291181049|gb|EFE36833.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371]
          Length = 1510

 Score = 98.8 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 34/251 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++ ++GY F    LL  A  H S          Y+RLEFLGD +L ++    LF  + 
Sbjct: 1227 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1286

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------------- 103
                  L+    ++VS +    +A  L+L   +   S+                      
Sbjct: 1287 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1346

Query: 104  ---RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155
                    +       D+VE+ + A+++D        +       +++ +       F  
Sbjct: 1347 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFAN 1406

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT---VVVEISGLAPAQGMDCSKRAAE 212
                       A       Y +     P  D         V +     A+G+  S R A+
Sbjct: 1407 KHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTVRALAAVCVHDDIVAEGVASSPRHAK 1466

Query: 213  QVAAAEVLKRE 223
              A+   L+  
Sbjct: 1467 LKASQNALQIL 1477



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 16/112 (14%)

Query: 1    MSALRYSTLE--KRIGYAFANRSLLEKALTHSS------------ISHSYQESYERLEFL 46
            M +     LE  +++        L  +ALT  S                  ++YERLEFL
Sbjct: 1012 MESY-LIALEACEKLQLKIP-PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFL 1069

Query: 47   GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            GD  L +  S  LF       E +  V+   L+  +     A  L++  FIR
Sbjct: 1070 GDCFLKMATSISLFAMNPDNDEYDYHVKRMLLICNQNLFNNAIILEIFKFIR 1121


>gi|126655310|ref|ZP_01726749.1| Ribonuclease III [Cyanothece sp. CCY0110]
 gi|126622789|gb|EAZ93494.1| Ribonuclease III [Cyanothece sp. CCY0110]
          Length = 240

 Score = 98.8 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 3   ALRYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
             +  T  +++G +     N  LL+ ALTH +IS     +Y++LEF+GD ++ L+ + +L
Sbjct: 9   KKQLETCLQKLGLSDTSVVNLELLDLALTHPTISREN--NYQQLEFVGDSVIRLVSAEIL 66

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--LRKDVCSFMTSIQAD 117
              +     GE +   + LVS  T ++ A +  L  ++ ++              +   +
Sbjct: 67  LETYPDELVGEFAAIRSILVSDRTLAEFAEQYGLDRYLLMADSVAQDTMGRVSWLADAFE 126

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            V   +     +  +           K   ++S   R++ K  LQEW  A++ + PEY+V
Sbjct: 127 AVLGALYLSTKNMTLVRPWLDPLLLKKAAEIRSDPARQNYKDALQEWTQAQYKILPEYRV 186

Query: 178 TFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           T +     HD RF   V +       G   SK+ AEQ AA + 
Sbjct: 187 TEQDKDRGHDERFFAEVSLKDRKLGSGYGRSKKMAEQAAAKDA 229


>gi|326481629|gb|EGE05639.1| hypothetical protein TEQG_04648 [Trichophyton equinum CBS 127.97]
          Length = 1519

 Score = 98.8 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 34/251 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++ ++GY F    LL  A  H S          Y+RLEFLGD +L ++    LF  + 
Sbjct: 1236 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------------- 103
                  L+    ++VS +    +A  L+L   +   S+                      
Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVNLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355

Query: 104  ---RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155
                    +       D+VE+ + A+++D        +       +++ +       F  
Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDEFFRKFIQHYFEDMSVYDTFAN 1415

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT---VVVEISGLAPAQGMDCSKRAAE 212
                       A       Y +     P  D         V +     A+G+  S R A+
Sbjct: 1416 KHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTVRALAAVCVHDDIVAEGVASSPRHAK 1475

Query: 213  QVAAAEVLKRE 223
              A+   L+  
Sbjct: 1476 LKASQNALQVL 1486



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 16/112 (14%)

Query: 1    MSALRYSTLE--KRIGYAFANRSLLEKALTHSS------------ISHSYQESYERLEFL 46
            M +     LE  +++        L  +ALT  S                  ++YERLEFL
Sbjct: 1021 MESY-LIALEACEKLQLKIP-PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFL 1078

Query: 47   GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            GD  L +  S  LF       E +  V+   L+  +     A  L++  FIR
Sbjct: 1079 GDCFLKMATSISLFAMNPDNDEYDYHVKRMLLICNQNLFNNAIILEIFKFIR 1130


>gi|326472405|gb|EGD96414.1| dicer [Trichophyton tonsurans CBS 112818]
          Length = 1519

 Score = 98.8 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 34/251 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++ ++GY F    LL  A  H S          Y+RLEFLGD +L ++    LF  + 
Sbjct: 1236 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------------- 103
                  L+    ++VS +    +A  L+L   +   S+                      
Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVNLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355

Query: 104  ---RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155
                    +       D+VE+ + A+++D        +       +++ +       F  
Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDEFFRKFIQHYFEDMSVYDTFAN 1415

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT---VVVEISGLAPAQGMDCSKRAAE 212
                       A       Y +     P  D         V +     A+G+  S R A+
Sbjct: 1416 KHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTVRALAAVCVHDDIVAEGVASSPRHAK 1475

Query: 213  QVAAAEVLKRE 223
              A+   L+  
Sbjct: 1476 LKASQNALQVL 1486



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 16/112 (14%)

Query: 1    MSALRYSTLE--KRIGYAFANRSLLEKALTHSS------------ISHSYQESYERLEFL 46
            M +     LE  +++        L  +ALT  S                  ++YERLEFL
Sbjct: 1021 MESY-LIALEACEKLQLKIP-PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFL 1078

Query: 47   GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            GD  L +  S  LF       E +  V+   L+  +     A  L++  FIR
Sbjct: 1079 GDCFLKMATSISLFAMNPDNDEYDYHVKRMLLICNQNLFNNAIILEIFKFIR 1130


>gi|72059370|ref|XP_790894.1| PREDICTED: similar to Dicer protein [Strongylocentrotus purpuratus]
 gi|115954873|ref|XP_001197815.1| PREDICTED: similar to Dicer protein [Strongylocentrotus purpuratus]
          Length = 1850

 Score = 98.5 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 92/254 (36%), Gaps = 39/254 (15%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   EK I Y F +R+ L +A THSS   +S  + Y+RLEFLGD +L  LI+  L++H  
Sbjct: 1596 YDGFEKTINYRFRDRAYLLQAFTHSSYHRNSITDCYQRLEFLGDALLDYLITRHLYDHHT 1655

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111
            +   G L+   ++LV+    + +A + +   + +  +     V                 
Sbjct: 1656 NLSPGALTDLRSALVNNTIFASLAVKFNFHKYFKAYTANMFQVIDNFVTFVDAKNEALGM 1715

Query: 112  ---------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
                                      D+ ES+  A+YLD G+ +   +   Y   +    
Sbjct: 1716 DSQLKYSEMDGEQEESEDIEVPKALGDIFESVAGAIYLDSGMSLNAVWKVYYPMMKQQIE 1775

Query: 151  GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                    + ++E    +                 D +  V V + G    +G+  +   
Sbjct: 1776 QYASDLPISPVRELLEMEPETARFGPPEKTI----DGKTRVTVNVVGKGQFKGIGRNYHI 1831

Query: 211  AEQVAAAEVLKREG 224
            A+  AA   L+   
Sbjct: 1832 AKATAARFALRHLK 1845


>gi|294054381|ref|YP_003548039.1| ribonuclease III [Coraliomargarita akajimensis DSM 45221]
 gi|293613714|gb|ADE53869.1| ribonuclease III [Coraliomargarita akajimensis DSM 45221]
          Length = 228

 Score = 98.5 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 92/208 (44%), Gaps = 5/208 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
                +TL  +I ++F + SLLE AL H S+     E  +RLEFLGD +L L+I+  L+ 
Sbjct: 1   MRTNLTTLADKIDHSFTDHSLLEMALKHPSLD-IGVEDNQRLEFLGDAVLDLVIAEYLYQ 59

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF S +EG L  R  SLVS +  +  A EL L + + VS   R         +  D +E+
Sbjct: 60  HFPSEEEGRLDRRRASLVSGKALAPKALELGLNTVLVVSEAQRTHHPEPSKGMLEDALEA 119

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ----EWAHAKFGVTPEYKV 177
           LI A+YLD G++ A   +   +        +                   + G  P+Y +
Sbjct: 120 LIGAIYLDAGLDAARRSIRHIFAPELAAMAEGSPHDSRAKNRLQEWTQKHRQGAQPKYAL 179

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMD 205
               GPDH   + V V +       G  
Sbjct: 180 IGSEGPDHARVYHVSVSLDDEELGTGSG 207


>gi|172038048|ref|YP_001804549.1| ribonuclease III [Cyanothece sp. ATCC 51142]
 gi|171699502|gb|ACB52483.1| ribonuclease III [Cyanothece sp. ATCC 51142]
          Length = 242

 Score = 98.5 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 8/223 (3%)

Query: 3   ALRYSTLEKRIGY---AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
             +  T  +++G    +  N  LL+ ALTH +IS     +Y++LEF+GD ++ L+ + +L
Sbjct: 11  KKQLETCLQKLGVWDTSVVNLELLDLALTHPTISRET--NYQQLEFVGDSVIRLVSAEIL 68

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--LRKDVCSFMTSIQAD 117
              +     GE +   + LVS  T ++ A +  L  ++ ++              +   +
Sbjct: 69  LETYPDELVGEFAAIRSILVSDRTLAEFAEQYGLDRYLLMADSVAQDTMGRVSWLADAFE 128

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            V   +     +  +           K   ++S   R++ K  LQEW  A++ + P+Y+V
Sbjct: 129 AVLGALYLSTKNMTLVRPWLDPLLLKKAAEIRSDPARQNYKDALQEWTQAQYKILPDYRV 188

Query: 178 TF-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           T       HD RF   V +       G   SK+ AEQ AA + 
Sbjct: 189 TEQHKDRGHDERFFAEVSLKDRKLGSGYGRSKKMAEQAAAKDA 231


>gi|255733032|ref|XP_002551439.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240131180|gb|EER30741.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 623

 Score = 98.5 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 95/238 (39%), Gaps = 18/238 (7%)

Query: 2   SALRYSTLEKRIGY--AFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRI 50
           S +    ++  +       +  L E+  TH S  ++              ERLEFLGD I
Sbjct: 233 SNINIKGIKNNLPELPKINDNKLFERVFTHKSFVNNKNYLNNSELLKLHNERLEFLGDSI 292

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           L  L++ ++F  F++  EGELS    SL+  +T  + A E    + ++   + ++ + S 
Sbjct: 293 LNNLVTLIIFKEFNNCNEGELSKIRASLICNKTLLKFAYEYGFDTRLKSFIN-KEAIKSG 351

Query: 111 MTSIQADVVESLIAALYLDGG------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW 164
              I ADV E+ I AL ++ G       +      +    +      K   D   + + +
Sbjct: 352 DQKIYADVFEAYIGALGIERGNDLKEVQDWLIKLFEPLIFELKKDLNKEPLDNNAKSELY 411

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +                G   + +F V   ++G    +G++ S + A   AA E LK 
Sbjct: 412 SLIGRTDMHPQYKVIEEGDGVEKKFIVSCMMNGEEIGKGVEKSIKDAGIRAAMEALKN 469


>gi|256824933|ref|YP_003148893.1| RNAse III [Kytococcus sedentarius DSM 20547]
 gi|256688326|gb|ACV06128.1| RNAse III [Kytococcus sedentarius DSM 20547]
          Length = 228

 Score = 98.5 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 89/204 (43%), Gaps = 4/204 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + LE+ +G    +  LL +A+TH S S+   +    ERLEFLGD +LGL+++  L+    
Sbjct: 6   ARLEEVVGV-PVDADLLLQAVTHRSFSYENDDAPHNERLEFLGDSVLGLVVTNHLYRANP 64

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+   +++VSA      A  LDL  + R+             SI AD VE++I 
Sbjct: 65  DLPEGELAKLRSAVVSARALGGEAGRLDLGDYFRLGRGEENSGGRAKNSILADGVEAVIG 124

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A+YL  G++ A T V     +   +S             +   +  G+         SGP
Sbjct: 125 AVYLSSGLDAATTVVHHLLDELMEQSQTMGAALDWKTSLQELGSARGLGLPEYRITDSGP 184

Query: 184 DHDPRFTVVVEISGLAPAQGMDCS 207
           DH   F     + G     G   +
Sbjct: 185 DHAKLFEATAVLGGEEAGTGSGPT 208


>gi|226294068|gb|EEH49488.1| Dicer [Paracoccidioides brasiliensis Pb18]
          Length = 1423

 Score = 98.1 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 75/233 (32%), Gaps = 16/233 (6%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
              +  R+GY F    LL  A TH+S    + +   Y+RLEFLGD +L ++    L++ + 
Sbjct: 1141 QQIGDRLGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYP 1200

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                  L+    ++VS +    VA +L L   +   S       +             I 
Sbjct: 1201 DRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLLYFSKALLGQITRYAEEIEATETESID 1260

Query: 125  ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            +             +    +            +   ++++         E    + +  +
Sbjct: 1261 SPDFWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQQCLKKYFEDMSIYDTFAN 1320

Query: 185  HDP--------------RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              P              R    V I     A+G+  S   A+  A+   L + 
Sbjct: 1321 KHPTASGEVDSVDAAEHRVLAAVIIHDEFVAEGIASSAGYAKVKASENALAKL 1373



 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 12/93 (12%)

Query: 20   RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT        H +          ++YERLEFLGD  L +  S  LF       
Sbjct: 946  PELALEALTKDSDNTEEHRAEQIHFQRGMGKNYERLEFLGDCFLKMSTSISLFAMNADDD 1005

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            E +  V+   L+  +     A  L +  F+R  
Sbjct: 1006 EFDFHVKRMCLICNQNLFNTAMSLGIYEFVRTQ 1038


>gi|296424770|ref|XP_002841919.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638171|emb|CAZ86110.1| unnamed protein product [Tuber melanosporum]
          Length = 1402

 Score = 98.1 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 79/248 (31%), Gaps = 31/248 (12%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              +E+ +GY F +  LL  ALTH S   +     SY+RLEFLGD +L L+    +F  + 
Sbjct: 1122 EDIEELVGYKFKHPRLLISALTHPSLPFTWDRVPSYQRLEFLGDAVLDLVCVRYMFQKYP 1181

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111
             A    L+    ++VS +    VA E+     +R    +                     
Sbjct: 1182 HADPQWLTEHKMAMVSNKFLGMVAVEMGFHRKLRRMGSVLDHAIREYEVDIQDAKANSNG 1241

Query: 112  -----------TSIQADVVESLIAALYLDGGIEVAGT----FVDKYWKQRALKSGKFRRD 156
                            DV+E+ I A+++D G +                  +        
Sbjct: 1242 AVDFWTSLKAPPKALPDVLEAFIGAVFVDSGFQYNIVERLVNTFILPYFVDMTVFDNFAG 1301

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT-VVVEISGLAPAQGMDCSKRAAEQVA 215
                              +    +     +  +    + +     + G   S +AA   A
Sbjct: 1302 QHPTTYITKFMDDLNCEFWGFESQQCMTGNMTYILTAIVVHREIFSYGSGVSVKAARVEA 1361

Query: 216  AAEVLKRE 223
            +   +++ 
Sbjct: 1362 SLAAIQKL 1369



 Score = 41.5 bits (95), Expect = 0.083,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 28   THS------SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
            TH       S+      +YERLEFLGD  L L  S  L+  + +  E EL V+   L+  
Sbjct: 942  THEHGSAQVSLQRGMGSNYERLEFLGDCFLKLATSLSLYTAYHADDECELHVKRMVLICN 1001

Query: 82   ETCSQVARELDLASFIR 98
                  A+E+ +  +I+
Sbjct: 1002 RYLFTKAKEMKIPEYIQ 1018


>gi|67923480|ref|ZP_00516956.1| Ribonuclease III [Crocosphaera watsonii WH 8501]
 gi|67854668|gb|EAM49951.1| Ribonuclease III [Crocosphaera watsonii WH 8501]
          Length = 238

 Score = 98.1 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 88/223 (39%), Gaps = 8/223 (3%)

Query: 3   ALRYSTLEKRIGYAFA---NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
             +  T  +++G + +   +  LL+ ALTH +IS     +Y++LEF+GD ++ L+ + +L
Sbjct: 9   KKQLETCLQKLGVSNSLSVDLKLLDLALTHPTISKEN--NYQQLEFVGDSVVRLVSAEIL 66

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              + +   GE +   + LVS  T ++ A    L  ++ +   + +D    ++ +     
Sbjct: 67  LETYPNELVGEFAAIRSILVSDRTLAEFADNYGLDRYLLMIDSVAQDKIGRVSWLADTFE 126

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL---QEWAHAKFGVTPEYK 176
             L A       + +   ++D    Q+A +          +    +        +     
Sbjct: 127 AVLGALYLSTQNMTLIRPWLDPLLLQKAAEIRSDPARQNYKDALQEWTQGQYKILPDYRV 186

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                   H  RF   V +       G   SK+ AEQ AA + 
Sbjct: 187 AEQHQNRGHHQRFFAEVWLKDRQLGSGYGRSKKMAEQAAAKDA 229


>gi|326334475|ref|ZP_08200686.1| ribonuclease 3 [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325693244|gb|EGD35172.1| ribonuclease 3 [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 255

 Score = 98.1 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 82/221 (37%), Gaps = 4/221 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALT---HSSISHSYQESYERLEFLGDRILGLLISTL 58
             + +  +EK +G+        E+A T   + S    +  SYERLEFLGD ILG +I+  
Sbjct: 15  DGIFFIEMEKLLGFPPKEIRYYEEAFTLGSNRSQDLGHPISYERLEFLGDAILGAVIAHF 74

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +F    +  EG+L+     +V  +  +Q+  EL L  +++          +   ++   +
Sbjct: 75  VFLQAPNKDEGDLTKMRTRMVRRDNLNQIGEELQLREYLQTERKSLLLSGNISGNLLEAL 134

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           V ++          E     +            K     K+ + EWA             
Sbjct: 135 VGAIYLDRGYQKATEFIHRILIDANLSMKDLENKVI-SYKSLMVEWAQKYHKTIAFIAEE 193

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             +       F   V I+     +  D SK+ AE+ AA   
Sbjct: 194 DPTYKGKIKYFQARVMINDKVYTKAHDTSKKKAEERAAKRA 234


>gi|168039663|ref|XP_001772316.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676303|gb|EDQ62787.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1275

 Score = 98.1 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 85/242 (35%), Gaps = 24/242 (9%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH-- 62
           + S LE  + Y F N+ LL +ALTH+S      + Y+RLEFLGD +L  LI+   + +  
Sbjct: 698 KVSELEILLNYKFQNKGLLVEALTHASCRRHSGDCYQRLEFLGDAVLDFLITKHFYANSA 757

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS-----IQAD 117
                 G L+   ++ V+ E  ++VA   +L  ++  +S                  Q  
Sbjct: 758 NLKRDPGLLTDLRSAAVNNECFARVAVRHNLHLYLLHNSSDLAARVDKYVHGSTTDAQCH 817

Query: 118 VVESLIAALYLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
                     L   +E    A      Y         K                     E
Sbjct: 818 GWNGDSGPKVLSDLVESLAGAVFLDSGYKLDTVWNVFKQLLKPLVTPATLRLEPIRELWE 877

Query: 175 YKVTFRSGPDHDPR-------F--TVVVEISGLAPAQGMDCSK---RAAEQVAAAEVLKR 222
              T + G  +  +       F  TV VE+       G+   K   ++A +VAA + L+ 
Sbjct: 878 LCQTEKFGEPNYKKKREAMGDFDMTVTVELKDETI-TGVGR-KPDEKSARKVAAIQALET 935

Query: 223 EG 224
             
Sbjct: 936 LK 937


>gi|171690380|ref|XP_001910115.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945138|emb|CAP71249.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1568

 Score = 98.1 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 86/269 (31%), Gaps = 52/269 (19%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
                KR+GY F    LL  A  H +   S     SY+RLEFLGD +L +     LF+ F 
Sbjct: 1258 EKFHKRMGYRFQYPRLLRSAFQHPTYPTSWEKLPSYQRLEFLGDALLDMACIDHLFHRFP 1317

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102
             A    L+    ++VS +    +A  +     ++ SS                       
Sbjct: 1318 GADPQWLTEHKMAMVSNQFLGCLAVYIGFHRSLQHSSPAVQSEIASYVTEIEEALAAAKA 1377

Query: 103  --------------LRKDVCSFMTSIQADVVESLIAALYLDGGIEV------AGTFVDKY 142
                               CS       D +E+ + A+++D   +           +  +
Sbjct: 1378 AAVQEGKSESNFARDFWVDCSRPPKCLPDTIEAYVGAIFVDSSYDYQTVQDFFDKHIQFW 1437

Query: 143  WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT--------FRSGPDHDPRFTVVVE 194
            ++   L      +   T L      +F       +T           G   + +    V 
Sbjct: 1438 FEDMRLYDTFANKHPVTFLGHEMQHRFRCQEWRLLTREIMVDKDEEGGMMGEKQVVCAVM 1497

Query: 195  ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + G   A  +  S R ++  AA + L+  
Sbjct: 1498 VHGQKLAHAVAQSARYSKIGAAKKALREL 1526



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 13/100 (13%)

Query: 13   IGYAFANRSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLF 60
            +G       L  +A T  S                   +YERLEFLGD  L +  +  ++
Sbjct: 1059 LGLNIR-PDLALEAFTKDSDNTDEQDVEQVNFQRGMGNNYERLEFLGDAFLKMATTIAIY 1117

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
                   E E  V    L+        A E+ L  +IR  
Sbjct: 1118 TLIPDKDEFEYHVERMVLICNRNLFNNALEVKLEEYIRSM 1157


>gi|325203773|gb|ADY99226.1| ribonuclease III [Neisseria meningitidis M01-240355]
          Length = 239

 Score = 98.1 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 12  AAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPKL 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 69  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   +  R          +D KT LQE   A+    P+Y++  + G  
Sbjct: 129 SFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 188

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
           +D  F V  ++  L    +    S+
Sbjct: 189 NDSMFVVSCDLGELGFVCRAKGTSR 213


>gi|269115244|ref|YP_003303007.1| dsRNA-specific ribonuclease III [Mycoplasma hominis]
 gi|268322869|emb|CAX37604.1| dsRNA-specific ribonuclease III [Mycoplasma hominis ATCC 23114]
          Length = 231

 Score = 98.1 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 93/233 (39%), Gaps = 16/233 (6%)

Query: 2   SALRYST-LEKRI---GYAFAN-----RSLLEKALTHSSISHSYQ--ESYERLEFLGDRI 50
             + +   L+  +   G  F       R     A THSS S+ ++  ESY+ LEFLGD +
Sbjct: 1   MKINFEENLQNALLKFGINFQKLDEQKRRYFCNAFTHSSYSNEHKNLESYQYLEFLGDSV 60

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           LG ++S  +F+++ +  EG+ +   + +V       +++     + +R       +    
Sbjct: 61  LGFVVSDFIFDNYKNFGEGKATKLKSEIVDKNALGFLSKYYGFPNCLRTGKSAFANG--K 118

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
                +D++ES I A Y   G++     +  +  +   K      +      +       
Sbjct: 119 GIKSDSDLIESFIGACYKACGLKFTKEIIYHFIDKILKKFHNSINEHPKTKLQELVQSNW 178

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                         ++ +F   V I+     +G+  SK+ ++  AA++ LK+ 
Sbjct: 179 GCRPRYEDQAL---NNGKFESKVFINNNLYGEGIGQSKKESQTKAASDALKKM 228


>gi|240247227|emb|CAX68236.1| dicer-1 [Blattella germanica]
          Length = 2271

 Score = 97.7 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 91/246 (36%), Gaps = 35/246 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E+RI Y F +RS L ++LTH+S S +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2015 YDVFERRIRYKFRDRSYLLQSLTHASYSPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 2074

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99
                G L+   ++LV+    + +A       + R                          
Sbjct: 2075 QHSPGALTDLRSALVNNTIFASLAVRYGFHKYFRHLSPGLNEVVDRFVRIQEENGHTISE 2134

Query: 100  ------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                    +  +     +     DV ES+  A++LD G+ +   +   Y   ++      
Sbjct: 2135 EYYLIEEEECEEAEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWRVYYRMMKSEIEQFS 2194

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
                K+ ++E            K           R  V VE+ G    +G+  + R A+ 
Sbjct: 2195 TNVPKSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVEVFGKGTFKGIGRNYRIAKC 2251

Query: 214  VAAAEV 219
             AA   
Sbjct: 2252 TAAKCA 2257



 Score = 40.3 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +D+  EG+LS   +  V
Sbjct: 1726 PSVILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQV 1783

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            S     ++ R       +  +     D            +E
Sbjct: 1784 SNLNLYRLGRRKVFGESMIATKFEPHDNWLPPCYYVPRELE 1824


>gi|242763899|ref|XP_002340666.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500]
 gi|218723862|gb|EED23279.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500]
          Length = 1494

 Score = 97.7 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 85/249 (34%), Gaps = 33/249 (13%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65
             +E ++GY F    LL  A TH S   ++     Y+RLEFLGD +L ++    L+  F  
Sbjct: 1208 QVEMKLGYCFQYPKLLRSAFTHPSYPSAWSTVPCYQRLEFLGDSLLDMVCVEDLYERFPD 1267

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---------------------- 103
                 L+    ++VS +    +A  L L + ++  S+                       
Sbjct: 1268 RDPQWLTEHKMAMVSNKFLGSLAVRLSLHTHLQYFSNPLQAQIARAVQDSQLAYDSHQTV 1327

Query: 104  -RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK-----YWKQRALKSGKFRRDA 157
                         +D+VE+ + A+++D G +              + +       F    
Sbjct: 1328 DFWLHTDDPPKCLSDMVEAYLGAIFVDSGFDFGVIESFYAKHIKPYFEDMALYDTFANKH 1387

Query: 158  KTELQEWAHAKFGVTPEYKVTFRSGPDHD---PRFTVVVEISGLAPAQGMDCSKRAAEQV 214
             T              +Y +     P  D   P     V +  +  AQG   S R A+  
Sbjct: 1388 PTTFLHRKLTDDFGCIQYTLRAAEIPSVDGAPPVVLAAVLVHDVVLAQGTASSGRYAKIK 1447

Query: 215  AAAEVLKRE 223
            A+   +K  
Sbjct: 1448 ASEVAMKNL 1456



 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 32/82 (39%)

Query: 32   ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
                  ++YERLEFLGD  L +  S  LF    + +E +  V   +L+        A + 
Sbjct: 1037 FQRGMGKNYERLEFLGDCFLKMATSISLFVESPNDQEYDFHVNRMTLICNRNLFNTAIQR 1096

Query: 92   DLASFIRVSSDLRKDVCSFMTS 113
             +   IR     R++       
Sbjct: 1097 KIYEHIRSKGFSRRNWYPDGMK 1118


>gi|124265843|ref|YP_001019847.1| ribonuclease III [Methylibium petroleiphilum PM1]
 gi|124258618|gb|ABM93612.1| Ribonuclease III [Methylibium petroleiphilum PM1]
          Length = 248

 Score = 97.7 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 77/205 (37%), Positives = 111/205 (54%), Gaps = 6/205 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           + +L+ R+G+ FA   LL +ALTH S      ++ ERLEFLGD +L   IS LLF HF  
Sbjct: 23  FDSLQVRLGHRFAQVGLLGRALTHKSFG---ADNNERLEFLGDAVLSAAISGLLFEHFGQ 79

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           + EG+L+     LV  E   ++A +L L + +R+S    +   +   SI AD VE+LIAA
Sbjct: 80  SGEGDLTRVRAHLVREEMLHRLALDLGLPALLRLSEGEARSGGARRPSILADAVEALIAA 139

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGG   A   V++ +     +  +  + RD KTELQEW  A+    P Y++    G 
Sbjct: 140 VYLDGGFASAQALVERLFTPLVASTAAEAWTRDPKTELQEWLQARRQPVPGYRIESTRGR 199

Query: 184 DHDPRFTVVVEISGLAP-AQGMDCS 207
            H+  FTVV  I   +   +G   S
Sbjct: 200 QHEQMFTVVCSIPSRSLEVRGEGRS 224


>gi|57236094|gb|AAW48724.1| dicer-1 [Aedes aegypti]
          Length = 2192

 Score = 97.7 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 87/248 (35%), Gaps = 30/248 (12%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS  E  +GY   +RS L +A+TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1937 YSAFEDSLGYH-HSRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A   D   + R  S    DV      IQ D    +  
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHIISE 2055

Query: 125  ALYLDGGIEVA---------------------GTFVDKYWKQRALKSGKFRRDAKTELQE 163
              YL    E                                    K  +     + E   
Sbjct: 2056 EYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMSLDAVWKVYRSMMGPEIEQFS 2115

Query: 164  WAHAKFGVT---PEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +  K  +         T + G         R  V VE+ G    +G+  + R A+  AA
Sbjct: 2116 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGTFRGIGRNYRIAKCTAA 2175

Query: 217  AEVLKREG 224
               L++  
Sbjct: 2176 KCALRQLK 2183



 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1654 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYENVHEGKLSHLRSKQV 1711

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            S     ++ R   L   +  +     D            +E
Sbjct: 1712 SNLNLYRLGRRKVLGESMIATKFEPHDNWLPPCYYVPKELE 1752


>gi|240255863|ref|NP_680697.4| ATRTL1 (ARABIDOPSIS THALIANA RNASEIII-LIKE 1); RNA binding /
           ribonuclease III [Arabidopsis thaliana]
 gi|332658200|gb|AEE83600.1| protein RNAse II-like 1 [Arabidopsis thaliana]
          Length = 264

 Score = 97.7 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 83/237 (35%), Gaps = 25/237 (10%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +   +LEK + Y F ++SLL KA T +S      ESYE LE LGD IL + I       +
Sbjct: 27  MEIESLEKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLY 86

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-----------------SSDLRKD 106
                G L+      V  E  ++VA    L S++R                     L  +
Sbjct: 87  PKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAMEKYPLHSN 146

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
               +  + AD+VES I A+++D         V K   +  +   K +    TEL E   
Sbjct: 147 GLLKVPKVLADIVESTIGAIFMDCNSTETVWKVIKPLLEPIIHLDKMKSHPMTELNEMCQ 206

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVLKR 222
            +            +        T    I       G    K+  A   AA   +  
Sbjct: 207 KRNLKLTSKDTWEENQ-------TYCFHIEDKFVGCGHHPVKKETARNFAAKNAIDN 256


>gi|283769480|ref|ZP_06342376.1| ribonuclease III [Bulleidia extructa W1219]
 gi|283103748|gb|EFC05134.1| ribonuclease III [Bulleidia extructa W1219]
          Length = 226

 Score = 97.7 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 8/210 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFN 61
           +         G    +  L+E+ALTHSS ++ +  +   ERLEF+GD +L L  S  ++ 
Sbjct: 1   MDIHNFLTAQGIKVDHFELIEQALTHSSYANEHGSKADNERLEFMGDAVLQLWSSAQIYP 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EG+++   + LV     +  +R+L L  +IR+             +I AD +E+
Sbjct: 61  LNL--SEGQMTRLRSQLVCESALANYSRQLGLNQYIRLGKGEEHSGGREKDAIIADALEA 118

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFGVTPEYKV 177
            + AL+LD G+      + +       ++ +  +    D KT LQE   A    +  Y++
Sbjct: 119 FLGALFLDQGMLAVDLILRQVITPHLQQAKEIVQGVQLDYKTRLQEVVQADSRRSLVYQL 178

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
               GP + P F +   + GL    G   S
Sbjct: 179 VSEKGPSNAPTFMMNAVVDGLVLGTGSGGS 208


>gi|212723814|ref|NP_001131630.1| hypothetical protein LOC100192986 [Zea mays]
 gi|194692090|gb|ACF80129.1| unknown [Zea mays]
          Length = 365

 Score = 97.3 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 91/244 (37%), Gaps = 26/244 (10%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62
           +   +LE  + Y+F + SLL +ALTH S         Y+RLEFLGD +L  + +   ++ 
Sbjct: 110 INVKSLELLLDYSFNDPSLLMEALTHGSYQIAGTTPCYQRLEFLGDAVLDHIFTDYFYHQ 169

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS---------------------S 101
           +       L+   ++ V+    +  A +  L   +  S                      
Sbjct: 170 YPECTPELLTDLRSASVNNSCYAHAAVKAGLHKHVLHSSSALHKRMADYLDKFEQSFSGP 229

Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
               +    +  +  DVVES+  A+Y+D   +    +         L +    ++   + 
Sbjct: 230 SHGWEAGISLPKVLGDVVESIAGAIYIDAKHDKGVVWRSMKRILEPLVTPDTLQNDPVKE 289

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220
            +      G T EY VT  +G          V   G    A     SK  A+++AA+ VL
Sbjct: 290 LQEFCDSKGYTLEYTVTRDNGVS---SVVAEVRTEGTTYKATRTGFSKLDAKKLAASSVL 346

Query: 221 KREG 224
           +   
Sbjct: 347 RDLK 350


>gi|154301554|ref|XP_001551189.1| hypothetical protein BC1G_10104 [Botryotinia fuckeliana B05.10]
 gi|150855766|gb|EDN30958.1| hypothetical protein BC1G_10104 [Botryotinia fuckeliana B05.10]
          Length = 1842

 Score = 97.3 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 72/255 (28%), Gaps = 46/255 (18%)

Query: 15   YAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            Y F +  LL  A  H +    +     Y+RLEFLGD +L +     LF++  +     L+
Sbjct: 1545 YHFKHPRLLRSAFIHPAYLFIYEQIPCYQRLEFLGDSLLDMACVNFLFHNHPTKDPQWLT 1604

Query: 73   VRFNSLVSAETCSQVARELDLASFIRVSSDL----------------------------- 103
                ++VS +    +  +L     +                                   
Sbjct: 1605 EHKMAIVSNQFLGALCVKLGFHKHLLTLDSQVQKMIADYSSDINEALIQAKTDAKRVGKV 1664

Query: 104  -------RKDVCSFMTSIQADVVESLIAALYLDGGIEV------AGTFVDKYWKQRALKS 150
                                D+VE+ I A+++D   +           +  Y++   +  
Sbjct: 1665 EDDYARDYWIAVRQPPKCLPDIVEAFIGAIFVDSEYDYGEVEKFFEMHIRWYFEDMGIYD 1724

Query: 151  GKFRRDAKTELQEWAHAKFGVTPE-YKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSK 208
                +   T L  +     G            G D         V I     +     S 
Sbjct: 1725 TYANKHPTTFLTNFLQKNMGCEDWAPVSKEVPGEDGRKNVVVCGVIIHNKVVSTATAESM 1784

Query: 209  RAAEQVAAAEVLKRE 223
            R A   AA   L++ 
Sbjct: 1785 RYARVGAARNALRKL 1799



 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 12/91 (13%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +A+T  S                   +YERLEFLGD  L +  S  L+     + 
Sbjct: 1344 PDLALEAVTKDSDNSGEHGEEQTNFQRGMGNNYERLEFLGDCFLKMGTSISLYGLNPDSD 1403

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            E    V    L+  +     A +L+L  +IR
Sbjct: 1404 EFRYHVDRMCLICNKNLFNTALKLELYKYIR 1434


>gi|269838233|ref|YP_003320461.1| ribonuclease III [Sphaerobacter thermophilus DSM 20745]
 gi|269787496|gb|ACZ39639.1| ribonuclease III [Sphaerobacter thermophilus DSM 20745]
          Length = 259

 Score = 97.3 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 68/209 (32%), Positives = 95/209 (45%), Gaps = 10/209 (4%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSY--------QESYERLEFLGDRILGLLISTLLFNH 62
           +R+G  F +  LL  ALTH S  +          ++S ERLEFLGD +LG++ +  L+  
Sbjct: 24  QRLGIEFRDLDLLRLALTHRSYLNELGISQIEAVRDSNERLEFLGDSVLGMITAEFLYRR 83

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+    +LV  ET ++ AR   L   + +              I A   E++
Sbjct: 84  FPRLPEGMLTAYRTALVRTETLARWARRFGLDELLYLGRGEITADGEIRDRILAGAFEAV 143

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           IAA+YLD GI     F+ +   + A +        + K  LQE       VTP Y+    
Sbjct: 144 IAAIYLDRGIRATRRFLRQLLIEDAEQIITEGQETNYKGRLQELVQEHMRVTPMYRTVAV 203

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           SGP HD  FTV V + G     G   SKR
Sbjct: 204 SGPAHDRVFTVEVVVGGECLGVGTGSSKR 232


>gi|255037664|ref|YP_003088285.1| ribonuclease III [Dyadobacter fermentans DSM 18053]
 gi|254950420|gb|ACT95120.1| ribonuclease III [Dyadobacter fermentans DSM 18053]
          Length = 248

 Score = 97.3 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 8/219 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTLLFN 61
            ++   IG   +N  + + A  H+S S       ++ES ERLE+LGD +LG++++  LF 
Sbjct: 25  ESIAHVIGDKPSNLGVYQLAFRHTSASRETAIKGFRESNERLEYLGDAVLGMVVAEFLFT 84

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG L+   + +V+ E+ +Q++R+L L     +  D  +   S  +S+  D +E+
Sbjct: 85  KYPYKDEGFLTEIRSRIVNRESLNQISRKLGLD--RLIEYDGNRRGMSPRSSMYGDALEA 142

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT-FR 180
            + A+YLD G     TF+              + +   +      A+             
Sbjct: 143 FVGAIYLDKGFRFTRTFIISKLITHYDLDSIIQNNVNFKSLIIEWAQREGKEIRFEILEE 202

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            G  H   F   + ++    A G   +K+ AEQ A+ + 
Sbjct: 203 RGTRHHREFISQILVNDEPFAIGNGFTKKKAEQSASEQA 241


>gi|325129784|gb|EGC52592.1| ribonuclease III [Neisseria meningitidis OX99.30304]
 gi|325133799|gb|EGC56455.1| ribonuclease III [Neisseria meningitidis M13399]
 gi|325135722|gb|EGC58334.1| ribonuclease III [Neisseria meningitidis M0579]
 gi|325141941|gb|EGC64381.1| ribonuclease III [Neisseria meningitidis 961-5945]
 gi|325143926|gb|EGC66236.1| ribonuclease III [Neisseria meningitidis M01-240013]
 gi|325197906|gb|ADY93362.1| ribonuclease III [Neisseria meningitidis G2136]
 gi|325202518|gb|ADY97972.1| ribonuclease III [Neisseria meningitidis M01-240149]
 gi|325206470|gb|ADZ01923.1| ribonuclease III [Neisseria meningitidis M04-240196]
 gi|325207732|gb|ADZ03184.1| ribonuclease III [Neisseria meningitidis NZ-05/33]
          Length = 239

 Score = 97.3 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++KR+GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 12  AAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPKL 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 69  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   +  R          +D KT LQE   A+    P+Y++  + G  
Sbjct: 129 SFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 188

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
           +D  F V  ++  L    +    S+
Sbjct: 189 NDSMFVVSCDLGELGFVCRAKGTSR 213


>gi|167570687|ref|ZP_02363561.1| ribonuclease III [Burkholderia oklahomensis C6786]
          Length = 454

 Score = 97.3 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++LD
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +             +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGL-APAQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDVKVSGSG 197


>gi|167563529|ref|ZP_02356445.1| ribonuclease III [Burkholderia oklahomensis EO147]
          Length = 293

 Score = 97.3 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++LD
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +             +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGL-APAQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDVKVSGSG 197


>gi|257138458|ref|ZP_05586720.1| ribonuclease III [Burkholderia thailandensis E264]
          Length = 464

 Score = 96.9 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++LD
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +             +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGLAP-AQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDIKVSGSG 197


>gi|167619235|ref|ZP_02387866.1| ribonuclease III [Burkholderia thailandensis Bt4]
          Length = 434

 Score = 96.9 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++LD
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +             +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGLAP-AQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDIKVSGSG 197


>gi|167581151|ref|ZP_02374025.1| ribonuclease III [Burkholderia thailandensis TXDOH]
          Length = 464

 Score = 96.9 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++LD
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +             +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGLAP-AQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDIKVSGSG 197


>gi|325529480|gb|EGD06389.1| ribonuclease III [Burkholderia sp. TJI49]
          Length = 279

 Score = 96.9 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++LD
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +             +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGL-APAQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDVKVSGSG 197


>gi|167837348|ref|ZP_02464231.1| ribonuclease III [Burkholderia thailandensis MSMB43]
          Length = 452

 Score = 96.9 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 63/199 (31%), Positives = 96/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFGKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A+++D
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFVD 118

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +             +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGLAP-AQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDIKVSGSG 197


>gi|33864214|ref|NP_895774.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9313]
 gi|33635798|emb|CAE22123.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9313]
          Length = 281

 Score = 96.9 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 5/213 (2%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           G      +++++ALTH+S       ++ERLEFLGD +L L  S  +  HF     GE S 
Sbjct: 45  GTEPRGLAVIDEALTHTSAQEII--NHERLEFLGDAVLRLAASEYIDRHFPRMNVGERSA 102

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
               LVS    ++V + + + S + +      D  +  T         + A       +E
Sbjct: 103 LRAHLVSDRWLAEVGQRIGIESVLIIGPMAAGDASAKPTLQAEATEALIGALYECWQSLE 162

Query: 134 VAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFT 190
               ++  +W++ +    +   R ++K+ LQEW+ A+    P Y+   RS    DP R+ 
Sbjct: 163 PIHRWLTPHWQEASSAVLTDPHRLNSKSALQEWSQARGLGLPRYECAERSKQHGDPQRYV 222

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             V +      +G   S+R AEQ AA   L+  
Sbjct: 223 CQVHLDDRPIGEGWGGSRRNAEQEAARRSLQAL 255


>gi|78183763|ref|YP_376197.1| ribonuclease III [Synechococcus sp. CC9902]
 gi|78168057|gb|ABB25154.1| RNAse III [Synechococcus sp. CC9902]
          Length = 249

 Score = 96.9 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 13/234 (5%)

Query: 1   MSAL---RYSTLEKRIGYAFAN----RSLLEKALTHSSISHSYQESYERLEFLGDRILGL 53
           M +    +   L + IG    N     SL+++AL H S      +++ERLEFLGD +L L
Sbjct: 1   MDSTRTNKLLELLQTIGLQELNSSKLLSLVDEALIHVSA--GRSKNFERLEFLGDAVLRL 58

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---VSSDLRKDVCSF 110
             +  +   + +   G  S     LVS    +Q+  +L L SF+     +        + 
Sbjct: 59  AATEFIDQQYPNLPVGRCSSLRAQLVSDRWLAQLGEQLQLESFLVLGPKALGDAAAQATL 118

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
                  ++ ++ +    +                  + +     + KT LQEW+ A+  
Sbjct: 119 QADATEALIGAIYSGSGNNLEPIHHWLTPHWQQTTADVLARPHLFNGKTMLQEWSQAEGL 178

Query: 171 VTPEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             P Y  T +S    DP RF   VE+     A G   S++ AEQ AA E ++R 
Sbjct: 179 GLPNYTTTEQSSRHGDPERFKSRVEVGSRLSANGFGRSRKEAEQNAATEAVQRL 232


>gi|167586632|ref|ZP_02379020.1| ribonuclease III [Burkholderia ubonensis Bu]
          Length = 278

 Score = 96.9 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFGKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++LD
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +             +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGL-APAQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDVKVSGSG 197


>gi|226199978|ref|ZP_03795528.1| ribonuclease III [Burkholderia pseudomallei Pakistan 9]
 gi|225928034|gb|EEH24071.1| ribonuclease III [Burkholderia pseudomallei Pakistan 9]
          Length = 462

 Score = 96.9 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFGKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++LD
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +             +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGLAP-AQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDIKVSGSG 197


>gi|167720558|ref|ZP_02403794.1| ribonuclease III [Burkholderia pseudomallei DM98]
          Length = 438

 Score = 96.9 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFGKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++LD
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +             +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGLAP-AQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDIKVSGSG 197


>gi|256087296|ref|XP_002579808.1| dicer-1 [Schistosoma mansoni]
 gi|238665295|emb|CAZ36047.1| dicer-1, putative [Schistosoma mansoni]
          Length = 2174

 Score = 96.9 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 92/267 (34%), Gaps = 52/267 (19%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISH-------------------SYQESYERLEF 45
            R+  LE  + Y F + SLL +A TH S                      +  + Y+RLEF
Sbjct: 1890 RFDELESSLNYTFKDPSLLIQAFTHPSYHQLRVLSTSNNLSDQSNLMFSTDLDCYQRLEF 1949

Query: 46   LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR------- 98
            LGD +L  +I+  L+        G L+   ++LV+    + +A  + L  + R       
Sbjct: 1950 LGDAVLDYVITRFLYEDSKQHSPGVLTDLRSALVNNNIFAALAVRIGLHKYFRASSPQLL 2009

Query: 99   ----------------------VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
                                    +  R      +    +D+ ESL  A++LD    +  
Sbjct: 2010 HTIDVFVRKSNNANNTIPTNTGHLTTNRLSDDVEIPKALSDIFESLAGAIFLDSNFSLDT 2069

Query: 137  TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
             +   Y   +           K+ +++    +   T   +         D R +V   + 
Sbjct: 2070 VWQIFYPIMKERIERYTACIPKSPVRQLLELEPEGTKFERARRMV----DGRISVCAHVL 2125

Query: 197  GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            G     G+  + R A+ +AA   L+  
Sbjct: 2126 GKGRFYGVGRNYRLAKSLAAKRALRVL 2152



 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             + + +ALT  S S+ +  + ER+E +GD  L  +++  L+  +  A EG+LS   + +V
Sbjct: 1634 PTTILQALT-MSCSNDFI-NLERMETIGDSFLKFVVTVHLYLTYPEAHEGKLSHLRSRIV 1691

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVC 108
                  ++ +  DL + +        +  
Sbjct: 1692 CNSNLYRLGKAKDLQNRMIGCKFEPHENW 1720


>gi|317968415|ref|ZP_07969805.1| putative ribonuclease III [Synechococcus sp. CB0205]
          Length = 236

 Score = 96.9 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 11/232 (4%)

Query: 1   MSALRYSTLEK---RIGYAFA---NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54
           M+A R++ L +    +G       +   L++ALTH+S       ++E+LEFLGD +L L 
Sbjct: 1   MNAERHAQLLQFLQALGLTTPAEMDLKRLDEALTHTSA--GLSVNHEKLEFLGDAVLRLA 58

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS--DLRKDVCSFMT 112
            S  L  H+ +   G+ S     LVS     ++ R + + + +R+             + 
Sbjct: 59  ASEFLEQHYPNLSVGQSSALRAQLVSDRWLGELGRAVGIDAVLRIGPTAAGDTSARETLR 118

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
           +   +     +  L+ D    +           RA ++     + K+ LQEW+  +    
Sbjct: 119 AEACEACIGALYRLWGDLTPVLLWLTPHWQATARAFEADPHLHNWKSALQEWSQGQKRGL 178

Query: 173 PEYKVTFRSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P+Y+    S    DPR F   V +      +G   S+R AEQ AA   L++ 
Sbjct: 179 PDYRCEEVSQVHADPRRFHCQVSLGKTTLGEGWGRSRRQAEQEAARVSLEKL 230


>gi|319952824|ref|YP_004164091.1| rnase iii [Cellulophaga algicola DSM 14237]
 gi|319421484|gb|ADV48593.1| RNAse III [Cellulophaga algicola DSM 14237]
          Length = 245

 Score = 96.9 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 87/217 (40%), Gaps = 6/217 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +G+     ++ +KA  H S +         +YERLEFLGD +LG +IS  L+    + 
Sbjct: 24  RILGFKPKKLAVYKKAFLHRSANIRDEDGTPMNYERLEFLGDSMLGTIISKYLYTEVPTG 83

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+   + +VS E  +++ +EL+L  ++           +   ++   +V ++    
Sbjct: 84  DEGYLTKMRSKIVSREHLNELGKELNLIHYVESRIPKSHFGDNIHGNVYEALVGAIYLDR 143

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
                 +     V   +       GK        ++     K   +  Y +   +G D  
Sbjct: 144 GYKYCEKFIHKSVIVPYVDIEQLEGKVISYKSLLIEWCQKQK--KSFYYDIYEDTGNDAV 201

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + I+    ++    SK+ AE++A+       
Sbjct: 202 KHFAVKLHINKKIVSKARATSKKKAEEIASKRAYYAL 238


>gi|284928941|ref|YP_003421463.1| RNAse III [cyanobacterium UCYN-A]
 gi|284809400|gb|ADB95105.1| RNAse III [cyanobacterium UCYN-A]
          Length = 243

 Score = 96.9 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 99/204 (48%), Gaps = 5/204 (2%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +  +L  ALTH + S   +++Y++LEF+GD ++ L+ + +L  ++ +   GE +   + L
Sbjct: 28  DWEILNLALTHPTFSQ--KDNYQQLEFVGDSVIRLVAAEILLENYPNELVGEFAAIRSIL 85

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           VS  T ++ A    L  ++ ++  + KD    ++ +       L A       + +   +
Sbjct: 86  VSDNTLAEFAEVYGLERYLLMAESVAKDKIGRVSWLADTFEALLGALYLNRQNMSLIRPW 145

Query: 139 VDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEI 195
           +D     K   +++   R++ K  LQEW+ +++ + P+Y+V    G  +H  RF   V +
Sbjct: 146 LDPLLITKAAEIRADPARQNYKDALQEWSQSQYKLLPKYQVVQHQGSENHHQRFFAEVWV 205

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEV 219
                  G  CSK+ AEQ AA   
Sbjct: 206 KNNNLGSGYGCSKKVAEQAAAKNA 229


>gi|62320294|dbj|BAD94606.1| CAF protein [Arabidopsis thaliana]
          Length = 690

 Score = 96.5 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 81/230 (35%), Gaps = 18/230 (7%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            ++ +  LE+ + Y F  + LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF 
Sbjct: 336 KSIDFVRLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFF 395

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD---- 117
            + S   G L+    + V+ E  ++VA +  L  ++R  S   +                
Sbjct: 396 TYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSK 455

Query: 118 ---------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
                      ++      +   I  A           A K  +         +      
Sbjct: 456 PGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHP 515

Query: 169 FGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGMDCSKRAAEQ 213
                E       G ++         TV V I G+      +  K+ A++
Sbjct: 516 VRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQK 565



 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 126 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 182

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIR 98
           EG+L+     +VS     Q A    L S+I+
Sbjct: 183 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 213



 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMD 205
            +   +  L +    K    P Y+     GP H  RFT  V ++            + M 
Sbjct: 609 HQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPM- 667

Query: 206 CSKRAAEQVAAAEVLKREG 224
            S + A+  AA  +L+   
Sbjct: 668 PSVKKAKDSAAVLLLELLN 686


>gi|313668838|ref|YP_004049122.1| ribonuclease III [Neisseria lactamica ST-640]
 gi|313006300|emb|CBN87763.1| putative ribonuclease III [Neisseria lactamica 020-06]
          Length = 239

 Score = 96.5 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 12  AAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPKL 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 69  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   +  R  +       +DAKT LQE   A+    P+Y++  + G  
Sbjct: 129 SFDADFNTAEKVVRHLFADRVRRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIGHA 188

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
           +D  F +  ++  L    +    S+
Sbjct: 189 NDSMFVISCDLGELGFVCRAKGTSR 213


>gi|83589801|ref|YP_429810.1| ribonuclease III [Moorella thermoacetica ATCC 39073]
 gi|123524697|sp|Q2RJX2|RNC_MOOTA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|83572715|gb|ABC19267.1| RNAse III [Moorella thermoacetica ATCC 39073]
          Length = 233

 Score = 96.5 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 101/213 (47%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLE---KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLI 55
           M   R   L+   ++      +   L+ ALTH + +  +      +RLEFLGD +LGL++
Sbjct: 1   MDNKRQEQLQHFWEQFHLPAIDLEGLDLALTHPTYAFEHHLPGDNQRLEFLGDAVLGLVV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           +T L+ HF    EG+L+    ++V   +  +VAR L +   +R+             S  
Sbjct: 61  ATYLYQHFPQLPEGDLTRMRAAVVCEASLVKVARRLRVGDLLRLGQGEEHSGGRERPSNL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           AD +E++I ++YL GG E+A  FV + +     + S     D+K+ LQE+  ++      
Sbjct: 121 ADAMEAIIGSVYLSGGYELARDFVLQIFTPALEILSDTSFIDSKSALQEFVQSQGTENVV 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           YK+    GPDH   +   V +     A G+  S
Sbjct: 181 YKILEEWGPDHAKGYKAGVFLKNRLLATGLGHS 213


>gi|291299631|ref|YP_003510909.1| ribonuclease III [Stackebrandtia nassauensis DSM 44728]
 gi|290568851|gb|ADD41816.1| ribonuclease III [Stackebrandtia nassauensis DSM 44728]
          Length = 243

 Score = 96.5 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 6/210 (2%)

Query: 20  RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             +L  A+TH S ++      + ERLEFLGD +LGL+++  L+  F    EG+L+    S
Sbjct: 25  PKMLTLAMTHRSYAYERGGLPTNERLEFLGDAVLGLVVTATLYRQFPDLPEGQLARLRAS 84

Query: 78  LVSAETCSQVARELDLA---SFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
           +V+    + VAR L        + +             SI AD VE+L+ ALYL+ G++V
Sbjct: 85  VVNMRALAGVARALGPGGVGPHLLLGKGEESSGGRDKNSILADSVEALLGALYLEHGMDV 144

Query: 135 AGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
           A   V K +      + +           +   +  G+         +GPDH  RFT   
Sbjct: 145 AAGVVHKLFDPMIEVAARRGAALDWKTSLQELTSGAGLGVPDYRISETGPDHAKRFTAWA 204

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + G    +G   SK+ AEQ+AA    +  
Sbjct: 205 VVGGEEFGEGTGGSKKEAEQIAAERAWREI 234


>gi|332664519|ref|YP_004447307.1| ribonuclease 3 [Haliscomenobacter hydrossis DSM 1100]
 gi|332333333|gb|AEE50434.1| Ribonuclease 3 [Haliscomenobacter hydrossis DSM 1100]
          Length = 248

 Score = 96.1 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 105/227 (46%), Gaps = 14/227 (6%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLFNH 62
            L+  +GY  AN  + + A +H S S+S  +     + ERLE+LGD +LG +++  LF  
Sbjct: 21  KLKPLLGYTPANLGIFKLAFSHKSTSNSGDKAYPMQNNERLEYLGDAVLGTIVAEYLFKK 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  + EG L+   + LV  ++ +++  +++L   +        +      S+  + VE+L
Sbjct: 81  YPDSNEGFLTKMRSKLVKRKSLNRIGDKMELELLL-----SEYNTTRLSRSMLGNAVEAL 135

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTF 179
           + A+YLD G      FV  +  ++ +   +      + K++L EW            +  
Sbjct: 136 VGAVYLDRGYASTKIFVINHMLRKYVNIHELERLDDNYKSQLLEWCQKSGKNVTYKLLAR 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
                 D  F V V I+    A   D +K++AEQ+A+ + +   GI 
Sbjct: 196 YKFEKRDR-FKVAVMINNKRVATADDFNKKSAEQMASEKAMIALGIL 241


>gi|309378209|emb|CBX23153.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 239

 Score = 96.1 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 12  AAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPKL 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 69  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   + +R  +       +DAKT LQE   A+    P+Y++  + G  
Sbjct: 129 SFDADFNTAEKVVRHLFSERVKRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIGHA 188

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
           +D  F +  ++  L    +    S+
Sbjct: 189 NDSMFVISCDLGELGFVCRAKGTSR 213


>gi|308190056|ref|YP_003922987.1| ribonuclease III [Mycoplasma fermentans JER]
 gi|319777350|ref|YP_004137001.1| ribonuclease iii [Mycoplasma fermentans M64]
 gi|238809526|dbj|BAH69316.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624798|gb|ADN69103.1| ribonuclease III [Mycoplasma fermentans JER]
 gi|318038425|gb|ADV34624.1| Ribonuclease III [Mycoplasma fermentans M64]
          Length = 236

 Score = 96.1 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 85/238 (35%), Gaps = 17/238 (7%)

Query: 1   MSALR--YSTLEKRIGYAFANRSLLEKALTHSSI-----------SHSYQESYERLEFLG 47
           M  ++       K     + N     +A+TH S                  +Y+ LEFLG
Sbjct: 1   MDEIKQTIQEFLKAWNINYHNLGYYRQAVTHGSYFGLKKNQNKNNVSERVGNYQDLEFLG 60

Query: 48  DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
           D IL  L S  +F  F +   G +++  + LV  ++ ++++ ++ L  F+  +       
Sbjct: 61  DAILQYLSSDFVFKKFPNLSAGNMTLIRSKLVCTKSLNEISTKIGLKDFLLTAPGQMSKD 120

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAH 166
                 + AD+ E+ IAA+YLD  ++V   F++K      +               +   
Sbjct: 121 AKRSVKVGADIFEAFIAAIYLDTNLKVVKEFLNKTVFDIKIGDFDIKHLKDAKTAFQEQI 180

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             F       +     P     F             G   SK  AE+ AA + L +  
Sbjct: 181 QSFSKLAVMYIVSEKSPT---EFEAHAVHDNKIYGIGFGKSKAEAEENAALDALHKMK 235


>gi|294155354|ref|YP_003559738.1| ribonuclease III [Mycoplasma crocodyli MP145]
 gi|291600141|gb|ADE19637.1| ribonuclease III [Mycoplasma crocodyli MP145]
          Length = 223

 Score = 96.1 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNH 62
             +           N  +  +A+THSS   S  +   YERLEFLGD ++  ++S+ LF  
Sbjct: 6   NLTEFFHIHEIEPNNTKIYLQAITHSSFFSSSNKKNSYERLEFLGDSVIQFVVSSELF-K 64

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            D   +G+++     +V AET + ++  + L   ++ +    ++     T IQ DV E++
Sbjct: 65  MDDLNQGKMTELRAKVVRAETLASISIAIGLIDILKTAPGGSQETIKNSTKIQCDVFEAI 124

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + A+Y+D G+++A  FV K+ KQ    + +          +     F          +  
Sbjct: 125 VGAIYVDQGLDIAYNFVFKFIKQYINGARQVENKDPKSRLQEYFQNFSKENIKYNVNQL- 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              +  F       G     G   SK+ AE  AA + LK+  
Sbjct: 184 --PNKIFQARAIHEGSVYGMGQGYSKKEAEIEAAIDALKKLK 223


>gi|325131860|gb|EGC54560.1| ribonuclease III [Neisseria meningitidis M6190]
 gi|325137910|gb|EGC60485.1| ribonuclease III [Neisseria meningitidis ES14902]
          Length = 239

 Score = 96.1 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 12  AAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 69  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   +  R  +       +D KT LQE   A+    P+Y++  + G  
Sbjct: 129 SFDADFNTAEKVVRHLFADRVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 188

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
           +D  F V  ++  L    +    S+
Sbjct: 189 NDSMFVVSCDLGELGFVCRAKGTSR 213


>gi|254514114|ref|ZP_05126175.1| ribonuclease III [gamma proteobacterium NOR5-3]
 gi|219676357|gb|EED32722.1| ribonuclease III [gamma proteobacterium NOR5-3]
          Length = 224

 Score = 96.1 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 8/212 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M A ++  LE++ G    N SLL +AL+H S+      + ERLEFLGD +LG ++S  L+
Sbjct: 1   MDAQQW--LERQFGCRLQNGSLLTQALSHRSVGS---RNNERLEFLGDSVLGFVVSEELY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EG+LS    SLV     + VARELDL   +R+ +           SI AD +E
Sbjct: 56  RRFPDADEGQLSRLRVSLVKGSALAAVARELDLGDQLRLGAGEIHGGGRRRDSILADTLE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L+ A+ LD GIE     + + ++ R    K  + R+D KT LQE+   +    P+Y + 
Sbjct: 116 ALLGAIVLDLGIEACRAAISRVFQSRFDALKLEQARKDPKTRLQEFLQGRGRQLPDYVLC 175

Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKR 209
             +G DH   FTV  E+  G   AQG+  S+R
Sbjct: 176 DAAGEDHAKIFTVACELSDGDEVAQGVGESRR 207


>gi|229495315|ref|ZP_04389050.1| ribonuclease III [Porphyromonas endodontalis ATCC 35406]
 gi|229317758|gb|EEN83656.1| ribonuclease III [Porphyromonas endodontalis ATCC 35406]
          Length = 298

 Score = 96.1 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 89/237 (37%), Gaps = 25/237 (10%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISH--------------SYQESYERLEFLGDRI 50
            + TLE+ +G+A  ++     AL   S +               +  ++ +RLEFLGD I
Sbjct: 24  DWKTLEQILGFAIRDKEYYRLALIDPSTTASGNGGKRAAGRSKMTSNDNNDRLEFLGDSI 83

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           +G ++S  L+  + ++  G LS +   +VS +    +A+ + +   I+ SS+      + 
Sbjct: 84  IGAVVSETLYRTYPNSPVGALSEQKAKIVSRKIGDTIAKRMGIDGLIQHSSENFLAKDA- 142

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
                 + +E+++ A+YLD G + A  FV+       +                      
Sbjct: 143 ----PGNALEAIVGAIYLDRGFDFAHQFVNHKML--GIYREIRETQPDLGTNFKNKLIEW 196

Query: 171 VTPEYKVTFRSGPDHDP----RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                         H P     F   V I           +K+ +EQ AA   L+  
Sbjct: 197 GLKHKCTVEFCLIAHAPGPRGYFVSQVFIDNQPMGHSKGSTKKGSEQGAAKLALEAI 253


>gi|84500562|ref|ZP_00998811.1| Ribonuclease III [Oceanicola batsensis HTCC2597]
 gi|84391515|gb|EAQ03847.1| Ribonuclease III [Oceanicola batsensis HTCC2597]
          Length = 226

 Score = 96.1 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 112/211 (53%), Gaps = 3/211 (1%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  +        RIG+ F    LL +++THSS+S   ++  +RLEFLGDR+LGL+++  L
Sbjct: 1   MKLSADLQAFSSRIGHDFRRPELLVQSVTHSSVSSPTRDDNQRLEFLGDRVLGLVMAEAL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                +A EG+L+ RFN+LV  E C+ VARE+ L + +++    +        ++  D +
Sbjct: 61  LASDRAASEGQLAPRFNALVRKEACADVAREVGLGAVLKLGRSEQLSGGRRKQALLGDAM 120

Query: 120 ESLI-AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+ + AA+YLDGG   A   + + W  R  +     RDAKT LQEWA  +    P Y   
Sbjct: 121 EA-VIAAVYLDGGFAAARDMILRLWGARVAQVDVDARDAKTALQEWAQGRGLPPPSYIEV 179

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            R GPDH P F +   +     AQ    SKR
Sbjct: 180 AREGPDHAPEFRIEARLVTGETAQASAGSKR 210


>gi|297250746|ref|ZP_06864987.2| ribonuclease III [Neisseria polysaccharea ATCC 43768]
 gi|296838254|gb|EFH22192.1| ribonuclease III [Neisseria polysaccharea ATCC 43768]
          Length = 267

 Score = 95.8 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++KR+GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 40  AAIQKRLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPKL 96

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 97  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 156

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   +  R          +D KT LQE   A+    P+Y++  + G  
Sbjct: 157 SFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGYA 216

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
           +D  F V  ++  L    +    S+
Sbjct: 217 NDSMFVVSCDLGELGFVCRAKGTSR 241


>gi|317037196|ref|XP_001398755.2| dicer-like protein 1 [Aspergillus niger CBS 513.88]
          Length = 1493

 Score = 95.8 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 85/247 (34%), Gaps = 34/247 (13%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65
             +E+++ Y F   +LL  A TH S   ++ +   Y+RLEFLGD ++ ++    LF  F  
Sbjct: 1213 KIEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPD 1272

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---------------------- 103
                 L+    ++VS +    +A +L L + ++  S                        
Sbjct: 1273 RDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGA 1332

Query: 104  --RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRRD 156
                 V         D+VE+ + A+++D        E       K + +       F   
Sbjct: 1333 VDYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKPFFEDMAIYDTFANK 1392

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISGLAPAQGMDCSKRAAEQ 213
              T               Y +     P  D         V +  +  A+G   S R A+ 
Sbjct: 1393 HPTTFLHNRLTNEFGCVNYCLKAGEMPSIDGAPAGVLAAVIVHDVVIAEGTATSGRYAKV 1452

Query: 214  VAAAEVL 220
             A+ + L
Sbjct: 1453 KASEKAL 1459



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 42/132 (31%), Gaps = 13/132 (9%)

Query: 11   KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58
            + + +      L  +A T        H +    +      +YERLEFLGD  L +  S  
Sbjct: 1007 ESLNFTVK-LDLALEAFTKDSDNTDEHRAQQIHVQRGMGRNYERLEFLGDCFLKMATSIA 1065

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
            LF       E +  V    L+  +     A + ++  +IR     R         +    
Sbjct: 1066 LFTQNPDDDEFDYHVNRMCLICNKNLFNAAVDKEIYKYIRSRGFSRHTWYPEGLKLLQGK 1125

Query: 119  VESLIAALYLDG 130
              S  A      
Sbjct: 1126 DHSRKATTESKH 1137


>gi|158706452|sp|A2RAF3|DCL1_ASPNC RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1525

 Score = 95.8 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 85/247 (34%), Gaps = 34/247 (13%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65
             +E+++ Y F   +LL  A TH S   ++ +   Y+RLEFLGD ++ ++    LF  F  
Sbjct: 1245 KIEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPD 1304

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---------------------- 103
                 L+    ++VS +    +A +L L + ++  S                        
Sbjct: 1305 RDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGA 1364

Query: 104  --RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRRD 156
                 V         D+VE+ + A+++D        E       K + +       F   
Sbjct: 1365 VDYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKPFFEDMAIYDTFANK 1424

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISGLAPAQGMDCSKRAAEQ 213
              T               Y +     P  D         V +  +  A+G   S R A+ 
Sbjct: 1425 HPTTFLHNRLTNEFGCVNYCLKAGEMPSIDGAPAGVLAAVIVHDVVIAEGTATSGRYAKV 1484

Query: 214  VAAAEVL 220
             A+ + L
Sbjct: 1485 KASEKAL 1491



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 42/132 (31%), Gaps = 13/132 (9%)

Query: 11   KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58
            + + +      L  +A T        H +    +      +YERLEFLGD  L +  S  
Sbjct: 1039 ESLNFTVK-LDLALEAFTKDSDNTDEHRAQQIHVQRGMGRNYERLEFLGDCFLKMATSIA 1097

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
            LF       E +  V    L+  +     A + ++  +IR     R         +    
Sbjct: 1098 LFTQNPDDDEFDYHVNRMCLICNKNLFNAAVDKEIYKYIRSRGFSRHTWYPEGLKLLQGK 1157

Query: 119  VESLIAALYLDG 130
              S  A      
Sbjct: 1158 DHSRKATTESKH 1169


>gi|169630337|ref|YP_001703986.1| ribonuclease III [Mycobacterium abscessus ATCC 19977]
 gi|169242304|emb|CAM63332.1| Ribonuclease III Rnc [Mycobacterium abscessus]
          Length = 258

 Score = 95.8 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 9/210 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
           R+  L   IG    +  LL  ALTH S ++      + ERLEFLGD +LGL I+  L++ 
Sbjct: 8   RHDDLRAAIGVQLGD-ELLTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITETLYHS 66

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVV 119
                EG+L+    S+V+ +  + VAR L    L + + +            +SI AD +
Sbjct: 67  HPDRSEGDLAKLRASIVNTQALAGVARGLTGDGLGAHLLLGKGEENTGGRDKSSILADGM 126

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177
           ES++ A+YL+ G+E A   V   + +    + K     D KT LQE    K    P Y V
Sbjct: 127 ESILGAVYLEHGLETARAVVLTLFGELLETAPKLGAGLDWKTSLQELTAEKGWGAPSYAV 186

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           T  +GPDHD  FT  V ++  A   G+  S
Sbjct: 187 TS-TGPDHDKEFTATVMVNDTAHGVGVGRS 215


>gi|221633356|ref|YP_002522581.1| ribonuclease III [Thermomicrobium roseum DSM 5159]
 gi|221156675|gb|ACM05802.1| ribonuclease III [Thermomicrobium roseum DSM 5159]
          Length = 252

 Score = 95.8 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 67/210 (31%), Positives = 93/210 (44%), Gaps = 11/210 (5%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQES--------YERLEFLGDRILGLLISTLLFN 61
            + +G AF    LL +ALTH S  +    S         ERLEFLGD +L LL+S  L+ 
Sbjct: 22  MEALGIAFRRPDLLRQALTHLSYVYERSRSTQAAVEEANERLEFLGDAVLELLVSEFLYR 81

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVE 120
            F +A EGEL+    +LV   T ++ AR   L  F+ +               I A   E
Sbjct: 82  RFPTASEGELTAYRAALVRTPTLARWARRFRLDEFLYLGRSEVPRPGRPVRERILAGAFE 141

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ ALYLD GI V   F+ +   + A    +     + K  LQE    +  +TP Y+  
Sbjct: 142 AVLGALYLDRGIRVVRRFLHRLLLEEAEGLIAIGQNENYKGRLQELIQDRLRITPVYRTI 201

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
             +GP H   FT  V I       G   SK
Sbjct: 202 AVTGPAHQRTFTAEVLIGERPYGVGHGPSK 231


>gi|156371137|ref|XP_001628622.1| predicted protein [Nematostella vectensis]
 gi|156215603|gb|EDO36559.1| predicted protein [Nematostella vectensis]
          Length = 261

 Score = 95.8 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 89/255 (34%), Gaps = 40/255 (15%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNH 62
            + +E  +GY F +R +L +ALTH+S   +Y     SYE+LEFLGD +L  L++  +   
Sbjct: 6   LALVEASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYLVTRHVLQR 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----------- 111
           F     G ++   +++V+  + + +  + D    +R  S     V               
Sbjct: 66  FPRLSPGAITDLRSAVVNNYSLACLTIQRDFHKHMRSMSMALFKVVRRFVRRLSEIEEKE 125

Query: 112 ----------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149
                                   +  D+ E+L+ ALY+D G +    +   Y     + 
Sbjct: 126 TRPDQLLLTTVEDGRGGEAIEVPKVLGDLFEALLGALYVDCGRDEELAWSVIYPLLTPII 185

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                    +  ++      G      ++      H       + + G     G   + +
Sbjct: 186 EHYSVHLPISPTRQLVEMMPGAATFTCLSQNVIGHHA----CELVVKGYGRFMGTGRNAQ 241

Query: 210 AAEQVAAAEVLKREG 224
            A   AA   L R  
Sbjct: 242 IARSTAAQHALARIK 256


>gi|326693698|ref|ZP_08230703.1| ribonuclease III [Leuconostoc argentinum KCTC 3773]
          Length = 240

 Score = 95.8 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 80/208 (38%), Gaps = 6/208 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L       F +  LL +ALT  +  + +       Y+RLEFLGD ++ + ++  LF  + 
Sbjct: 17  LRTEFNIVFHDEDLLLEALTQRNYLNEHPNEPGRDYQRLEFLGDSVMQVSVAEYLFKRYP 76

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+L+    ++V   + +  +R + L   +R+             S+  D+ E+ I 
Sbjct: 77  NWHEGQLTEMRIAMVQTRSFAHFSRLVHLNEAVRLGKGEEMSGARERDSLLEDIWEAFIG 136

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--G 182
           ALYLD G +    F+++            R        +      G       T R    
Sbjct: 137 ALYLDQGADAVQEFLERTLFAAIDTGFFDRFIDFKSRLQEKLQVNGAVVIDYQTEREQAM 196

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            D    F   V + G   A+G   S + 
Sbjct: 197 ADKTQVFEASVSVDGHELARGTGKSIKD 224


>gi|320590575|gb|EFX03018.1| rnase3 domain containing protein [Grosmannia clavigera kw1407]
          Length = 1246

 Score = 95.8 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 91/267 (34%), Gaps = 52/267 (19%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            ++ K +GY F    LL  A TH S    +    SY+RLEFLGD +L + I   LF+ F +
Sbjct: 945  SIAKDLGYQFRFPRLLRSAFTHPSYPRIYENLPSYQRLEFLGDALLDMAIVDYLFHKFSN 1004

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR--------------------- 104
                 L+    ++VS +  + ++  L     I   S                        
Sbjct: 1005 KDPQWLTEHKMAMVSNQFLAFLSVSLGFHRHILSFSGEMRKQILEYVTKVEEERVRAESE 1064

Query: 105  ---------------KDVCSFMTSIQADVVESLIAALYLDGGIEV-------AGTFVDKY 142
                               +      ADV+E+ + AL++D   +          T V  Y
Sbjct: 1065 AVEAGRPASEFARDYWVHVTHPPKALADVLEAYVGALFVDSEYDYHGTVLKFFNTHVQPY 1124

Query: 143  WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF---RSGPDHDPRFTVVV----EI 195
            +K  +L      +   T   +    +FG      +      +  +    F   V     +
Sbjct: 1125 FKDMSLYDTFANKHPVTFAVKMLSQRFGCRDWRVIVQEIPDTEGEGCVTFATKVAAGFLV 1184

Query: 196  SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             G     G+  S R A+  AA + L +
Sbjct: 1185 HGQVVGHGIAESGRYAKIGAAKKALAK 1211



 Score = 40.7 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 27/67 (40%)

Query: 32  ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
                  +YERLE LGD  L L  S  LF       E E  V+   ++        A ++
Sbjct: 751 FQAGMGRNYERLELLGDSFLKLATSIALFTLVPDKDEFEYHVQRMCMICNRNLFNNALDM 810

Query: 92  DLASFIR 98
            L  +IR
Sbjct: 811 KLEEYIR 817


>gi|224064945|ref|XP_002301611.1| predicted protein [Populus trichocarpa]
 gi|222843337|gb|EEE80884.1| predicted protein [Populus trichocarpa]
          Length = 303

 Score = 95.8 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 90/238 (37%), Gaps = 27/238 (11%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               +E+ + Y F ++ LLE+ALTH+S S     SYERLE++GD +L LL +   +  + 
Sbjct: 53  DLDEVEEILHYKFKSKKLLEEALTHASFS-DQCFSYERLEYVGDSVLNLLFTKEQYFLYP 111

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111
               G L+   ++ V  E  ++VA +  L  ++R    L ++                  
Sbjct: 112 DLPPGPLTRLRSANVDTEKLARVAIKHKLHRYLRHKMPLLEEQIREFSQAILDYPLHSNG 171

Query: 112 ----TSIQADVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAH 166
                   AD+VE+ I A+++D    +   +       +  +     +    TEL E   
Sbjct: 172 LVETPKALADIVEAAIGAVFIDSNFSIDVVWKIFKDLLEPIISQETLKVHPVTELYEVCQ 231

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVLKRE 223
            +        +   +       F   V I      +G    K+  A   AA   L   
Sbjct: 232 KRNLKVKFVDLWKENMA-----F--DVFIDDQFVGRGTYGLKKEIAHNRAAKNALNNI 282


>gi|313675278|ref|YP_004053274.1| RNAse iii [Marivirga tractuosa DSM 4126]
 gi|312941976|gb|ADR21166.1| RNAse III [Marivirga tractuosa DSM 4126]
          Length = 243

 Score = 95.4 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 85/226 (37%), Gaps = 7/226 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61
            + ++  +GY      L      HSS++    + ++ S ERLE+LGD ILG +++  LF 
Sbjct: 20  VAAVKSIVGYKPFRLELFRLVTQHSSVAKTLPNGFRASNERLEYLGDAILGAVVADYLFK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVE 120
            +    EG L+   + +V+ E+ S +A+++ ++  +       +         +    + 
Sbjct: 80  KYPFKDEGFLTEIRSRIVNRESLSLLAKKIGISQMLESDFSRSRYHFKSIYGDMMEAFIG 139

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++          +     +                     ++        +  + +   +
Sbjct: 140 AVYIDRGYKYCQKFIINKLLIPHFDLDEIIENNTNYKSILIEWSQKENKSIRFDIEDQKQ 199

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            G      F   + ++    ++G   +K+ AEQ AA +  ++  + 
Sbjct: 200 EGS--KKEFRAAIFVNSEKISKGAGLNKKKAEQNAAFKACRKLNLI 243


>gi|330723844|gb|AEC46214.1| Ribonuclease III [Mycoplasma hyorhinis MCLD]
          Length = 225

 Score = 95.4 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 10/218 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTL 58
           MS+++   L   +     N SL E+A TH S  H    +  YE LEFLGD +L L  S  
Sbjct: 1   MSSIK--ELLLNLNIVANNLSLYEQAFTHKSYHHVRPNKPHYEMLEFLGDSLLNLQTSLY 58

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +F + D+  EG  ++  + +VS+ + ++++ +L L+ +++V+    + + +      AD+
Sbjct: 59  IFKNIDAKNEGNATILRSQIVSSVSFAKISDKLQLSKYLKVAKGSEEILNNTKIK--ADI 116

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +ESL AA+YLD   +    FV K       K  K          +     F  +    +T
Sbjct: 117 LESLTAAIYLDQDKKTFEDFVKKILHSLVKKQSKKVIKDPKSEFQEIIQSFSKSSIKYIT 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            ++    D  F   +         G   S + AE  AA
Sbjct: 177 KKT----DKFFESELIWDNKIYGHGKGNSIKEAELEAA 210


>gi|148241236|ref|YP_001226393.1| ribonuclease III [Synechococcus sp. RCC307]
 gi|147849546|emb|CAK27040.1| Ribonuclease III [Synechococcus sp. RCC307]
          Length = 236

 Score = 95.4 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 84/209 (40%), Gaps = 9/209 (4%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L  ALTH+S       ++E LEFLGD +L L  +  L  +      GE S     LVS  
Sbjct: 25  LHTALTHTSAGLEV--NHEELEFLGDAVLRLACAEFLEENNSKLSVGERSAFRAQLVSDR 82

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
             +++A EL L   I+  S    D  +  T         + A     GG +     V ++
Sbjct: 83  WLAELAAELQLDGLIKQGSATAADTTARATVRAECCEALVGAVYLAWGGADGGLHAVRQW 142

Query: 143 WKQRALKSG------KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEI 195
              +  +S         R + K+ LQE   A+    P Y  T  +    D R F  VV +
Sbjct: 143 LDPQWQRSCLELAEDPHRHNWKSALQELTQAQQAGLPSYSTTEENSNHGDQRRFRSVVSV 202

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +      G   S+R AEQ AA   L++  
Sbjct: 203 NAKEKGCGWGPSRRLAEQEAARAALEQLK 231


>gi|116071631|ref|ZP_01468899.1| Ribonuclease III [Synechococcus sp. BL107]
 gi|116065254|gb|EAU71012.1| Ribonuclease III [Synechococcus sp. BL107]
          Length = 251

 Score = 95.4 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 96/234 (41%), Gaps = 13/234 (5%)

Query: 1   MSA---LRYSTLEKRIGYAFANR----SLLEKALTHSSISHSYQESYERLEFLGDRILGL 53
           M +        L + IG    N     +L+++ALTH S      +++ERLEFLGD +L L
Sbjct: 1   MDSTRTKNLLELLRAIGLQELNSSKLMNLVDEALTHISA--GRGKNFERLEFLGDAVLRL 58

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS---DLRKDVCSF 110
             +  + +H+ +   G  S     LVS    +Q+  +L L SF+ +            + 
Sbjct: 59  AATEFIDHHYPNLPVGSCSSLRAQLVSDRWLTQLGEKLQLESFLVIGPKALGDEAARATL 118

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
                  ++ ++ +    +                  + +     + K+ LQEW+ A+  
Sbjct: 119 HADATEALIGAIYSGSDNNLEPIHQWLTPQWQQTTADVFATPHLFNGKSILQEWSQAEGL 178

Query: 171 VTPEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             P Y  T +S    DP RF   V++     A G   S++ AEQ AA+  ++  
Sbjct: 179 GLPNYITTEQSCRHGDPERFKSHVQVGTRLGADGFGRSRKYAEQNAASNAVQSL 232


>gi|300741697|ref|ZP_07071718.1| ribonuclease III [Rothia dentocariosa M567]
 gi|311113800|ref|YP_003985022.1| ribonuclease III [Rothia dentocariosa ATCC 17931]
 gi|300380882|gb|EFJ77444.1| ribonuclease III [Rothia dentocariosa M567]
 gi|310945294|gb|ADP41588.1| ribonuclease III [Rothia dentocariosa ATCC 17931]
          Length = 228

 Score = 95.4 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 59/215 (27%), Positives = 90/215 (41%), Gaps = 8/215 (3%)

Query: 1   MSALRYS--TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIS 56
           M+ +      L +R+G    +      +LTH S +      E  ERLEFLGD +L L I+
Sbjct: 1   MTNIPSEAGELLERLGVDI-DAETFLLSLTHRSYAFENPGVEHNERLEFLGDSVLSLAIA 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++       EGEL    + +VSA   +  AR+L+L   IR+    R    +   SI A
Sbjct: 60  EEVYRRHPELPEGELVKLHHVVVSAPALAIAARKLELGKHIRLGKGERLTGGADKDSILA 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           D +E++  A Y+  G E A   V +         +     RD KT+LQ    ++      
Sbjct: 120 DTMEAIFGATYISLGREAARELVLRLIAPMLEDEQILNSGRDWKTDLQTLVTSRSWG-DV 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                  GPDH   +T    ++      G   SK+
Sbjct: 179 TYEIEAEGPDHARVYTARAIVAKQTAGTGSGPSKK 213


>gi|94450854|gb|ABF19797.1| dicer-like 2 spliceform 1 [Arabidopsis thaliana]
          Length = 1386

 Score = 95.4 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 82/239 (34%), Gaps = 32/239 (13%)

Query: 10   EKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            E  + Y+F ++SLL +ALTH S         Y+RLEFLGD +L  LI+  L++ +     
Sbjct: 1151 ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSP 1210

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI----- 123
            G L+   ++ V+ E  + VA + +L   I  +S       S   S               
Sbjct: 1211 GLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWES 1270

Query: 124  -----------------AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
                             A     G  +       K      +     +     EL E   
Sbjct: 1271 DISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQ 1330

Query: 167  AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
                   + K            FTV V+   ++ A       K+ A+++A  EVL    
Sbjct: 1331 KWQFELSKAKDFD--------SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 1381


>gi|6714410|gb|AAF26098.1|AC012328_1 unknown protein [Arabidopsis thaliana]
          Length = 2042

 Score = 95.4 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 82/239 (34%), Gaps = 32/239 (13%)

Query: 10   EKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            E  + Y+F ++SLL +ALTH S         Y+RLEFLGD +L  LI+  L++ +     
Sbjct: 1807 ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSP 1866

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI----- 123
            G L+   ++ V+ E  + VA + +L   I  +S       S   S               
Sbjct: 1867 GLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWES 1926

Query: 124  -----------------AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
                             A     G  +       K      +     +     EL E   
Sbjct: 1927 DISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQ 1986

Query: 167  AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
                   + K            FTV V+   ++ A       K+ A+++A  EVL    
Sbjct: 1987 KWQFELSKAKDFD--------SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 2037


>gi|332189100|gb|AEE27221.1| endoribonuclease Dicer [Arabidopsis thaliana]
          Length = 1910

 Score = 95.4 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 81/230 (35%), Gaps = 18/230 (7%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             ++ +  LE+ + Y F  + LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF 
Sbjct: 1556 KSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFF 1615

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD---- 117
             + S   G L+    + V+ E  ++VA +  L  ++R  S   +                
Sbjct: 1616 TYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSK 1675

Query: 118  ---------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
                       ++      +   I  A           A K  +         +      
Sbjct: 1676 PGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHP 1735

Query: 169  FGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGMDCSKRAAEQ 213
                 E       G ++         TV V I G+      +  K+ A++
Sbjct: 1736 VRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQK 1785



 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 1346 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1402

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1403 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1433



 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMD 205
             +   +  L +    K    P Y+     GP H  RFT  V ++            + M 
Sbjct: 1829 HQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPM- 1887

Query: 206  CSKRAAEQVAAAEVLKREG 224
             S + A+  AA  +L+   
Sbjct: 1888 PSVKKAKDSAAVLLLELLN 1906


>gi|296139284|ref|YP_003646527.1| ribonuclease III [Tsukamurella paurometabola DSM 20162]
 gi|296027418|gb|ADG78188.1| ribonuclease III [Tsukamurella paurometabola DSM 20162]
          Length = 249

 Score = 95.4 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 7/205 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L + +G    +  LL  ALTH S ++      + ERLEFLGD +LG+ ++  L+      
Sbjct: 16  LLEALGVELDD-ELLTLALTHRSYAYEAGGLPTNERLEFLGDSVLGISVTEWLYVTHPDK 74

Query: 67  KEGELSVRFNSLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            EGEL+    S+V+    ++VAR+L      + + +             SI AD +E+L+
Sbjct: 75  PEGELAKIRASVVNMHALARVARKLGEGGLGAHLYLGRGEELTGGRDKDSILADGMEALL 134

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSG 182
            A++++ GI+ A + V + ++     S             +   A+  +         +G
Sbjct: 135 GAVHIEHGIDTARSVVLRLFEPMLTTSSTMGAGLDWKTSLQELTAERDLGVPAYRITSTG 194

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS 207
           PDHD  FT VV I      +G+  +
Sbjct: 195 PDHDKEFTAVVVIDEADLGEGVGRT 219


>gi|6102610|gb|AAF03534.1|AF187317_1 CAF protein [Arabidopsis thaliana]
          Length = 1909

 Score = 95.4 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 81/230 (35%), Gaps = 18/230 (7%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             ++ +  LE+ + Y F  + LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF 
Sbjct: 1555 KSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFF 1614

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD---- 117
             + S   G L+    + V+ E  ++VA +  L  ++R  S   +                
Sbjct: 1615 TYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSK 1674

Query: 118  ---------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
                       ++      +   I  A           A K  +         +      
Sbjct: 1675 PGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHP 1734

Query: 169  FGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGMDCSKRAAEQ 213
                 E       G ++         TV V I G+      +  K+ A++
Sbjct: 1735 VRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQK 1784



 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 1345 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1401

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1402 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1432



 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMD 205
             +   +  L +    K    P Y+     GP H  RFT  V ++            + M 
Sbjct: 1828 HQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPM- 1886

Query: 206  CSKRAAEQVAAAEVLKREG 224
             S + A+  AA  +L+   
Sbjct: 1887 PSVKKAKDSAAVLLLELLN 1905


>gi|15223286|ref|NP_171612.1| DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA
            binding / protein binding / ribonuclease III [Arabidopsis
            thaliana]
 gi|34922211|sp|Q9SP32|DCL1_ARATH RecName: Full=Endoribonuclease Dicer homolog 1; AltName:
            Full=Dicer-like protein 1; Short=AtDCL1; AltName:
            Full=Protein ABNORMAL SUSPENSOR 1; AltName: Full=Protein
            CARPEL FACTORY; AltName: Full=Protein SHORT INTEGUMENTS
            1; AltName: Full=Protein SUSPENSOR 1
 gi|11559645|gb|AAG38019.1|AF292940_1 short integuments 1 [Arabidopsis thaliana]
 gi|11559647|gb|AAG38020.1|AF292941_1 short integuments 1 [Arabidopsis thaliana]
 gi|332189099|gb|AEE27220.1| endoribonuclease Dicer [Arabidopsis thaliana]
          Length = 1909

 Score = 95.4 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 81/230 (35%), Gaps = 18/230 (7%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             ++ +  LE+ + Y F  + LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF 
Sbjct: 1555 KSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFF 1614

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD---- 117
             + S   G L+    + V+ E  ++VA +  L  ++R  S   +                
Sbjct: 1615 TYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSK 1674

Query: 118  ---------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
                       ++      +   I  A           A K  +         +      
Sbjct: 1675 PGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHP 1734

Query: 169  FGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGMDCSKRAAEQ 213
                 E       G ++         TV V I G+      +  K+ A++
Sbjct: 1735 VRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQK 1784



 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 1345 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1401

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1402 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1432



 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMD 205
             +   +  L +    K    P Y+     GP H  RFT  V ++            + M 
Sbjct: 1828 HQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPM- 1886

Query: 206  CSKRAAEQVAAAEVLKREG 224
             S + A+  AA  +L+   
Sbjct: 1887 PSVKKAKDSAAVLLLELLN 1905


>gi|91215536|ref|ZP_01252507.1| putative ribonuclease III [Psychroflexus torquis ATCC 700755]
 gi|91186488|gb|EAS72860.1| putative ribonuclease III [Psychroflexus torquis ATCC 700755]
          Length = 245

 Score = 95.4 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLIST 57
           + + +  +++ I     + S+ ++A THSS+          SYERLEFLGD ILG +IST
Sbjct: 16  NGIFFKKIQRIIKVKHKSLSIYKQAFTHSSLKLKDDEGKFISYERLEFLGDSILGAVIST 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF +     EG L+   + +VS +  + +    DLA        + K   +   ++   
Sbjct: 76  YLFENAPHGDEGYLTKMRSKIVSRKNLNLLGESFDLADLTLSEIPVEKMGKNINGNLFEA 135

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ++ ++                V +     A    +        ++     KF    E+ +
Sbjct: 136 LIGAIYVDKGFKDCEAFIYKKVIREDVDLAKLEKRVMSYKSLMIEWCQKNKF--PFEFVI 193

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
               G D +  F V + I+     +  + SK+ AE+ A+   
Sbjct: 194 EDDFGKDEEKHFAVKLIINNEISGKARETSKKRAEEKASQRA 235


>gi|304373283|ref|YP_003856492.1| Ribonuclease III [Mycoplasma hyorhinis HUB-1]
 gi|304309474|gb|ADM21954.1| Ribonuclease III [Mycoplasma hyorhinis HUB-1]
          Length = 225

 Score = 95.0 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 10/218 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTL 58
           MS+++   L   +     + SL E+A TH S  H    +  YE LEFLGD +L L  S  
Sbjct: 1   MSSIK--ELLLNLNIVANDLSLYEQAFTHKSYHHVRPNKPHYEMLEFLGDSLLNLQTSLY 58

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +F + D+  EG  ++  + +VS+ + ++++ +L L+ +++V+    + + +      AD+
Sbjct: 59  IFKNIDAKNEGNATILRSQIVSSVSFAKISEKLQLSKYLKVAKGSEEILNNTKIK--ADI 116

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +ESL AA+YLD   +    FV K       K  K          +     F  +    +T
Sbjct: 117 LESLTAAIYLDQDKKTFEDFVKKILHSLVKKQSKKVIKDPKSEFQEIIQSFSKSSIKYIT 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            ++    D  F   +         G   S + AE  AA
Sbjct: 177 KKT----DKFFESELIWDNKIYGHGKGNSIKEAELEAA 210


>gi|300775975|ref|ZP_07085834.1| ribonuclease III [Chryseobacterium gleum ATCC 35910]
 gi|300505108|gb|EFK36247.1| ribonuclease III [Chryseobacterium gleum ATCC 35910]
          Length = 254

 Score = 95.0 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L+K +G    N +L  +A +  + S +   +YERLEFLGD +LG +IS  LF  +  A
Sbjct: 28  TELKKVLGTEVQNIALYREAFSLKNSSKNQDSNYERLEFLGDSVLGTIISCHLFQTYPQA 87

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+   + +V+ +  +++  +L L + ++  +       +   ++   ++ +     
Sbjct: 88  NEGYLTQMKSKIVNRKNLNKLGEDLKLTNLLQKQNSSSALGENISGNLFEALIGA---VY 144

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
                       ++K      +   + +  +   L      K  V  +Y+       +  
Sbjct: 145 LDFHYDACKRIILEKLLTPSEINKLENKIVSYKGLLLEWSQKKKVNIKYETCEEIQANKS 204

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL----KREGIW 226
             F   V +     A   + SK+ AE+ AA        K+E I 
Sbjct: 205 VVFRCHVWLGEEKIANATETSKKKAEEKAAQRAFYILNKKENIL 248


>gi|145338056|ref|NP_566199.4| DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA
            binding / double-stranded RNA binding / helicase/ nucleic
            acid binding / ribonuclease III [Arabidopsis thaliana]
 gi|322518659|sp|Q3EBC8|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName:
            Full=Dicer-like protein 2; Short=AtDCL2
 gi|332640403|gb|AEE73924.1| protein dicer-like 2 [Arabidopsis thaliana]
 gi|332640405|gb|AEE73926.1| protein dicer-like 2 [Arabidopsis thaliana]
          Length = 1388

 Score = 95.0 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 82/239 (34%), Gaps = 32/239 (13%)

Query: 10   EKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            E  + Y+F ++SLL +ALTH S         Y+RLEFLGD +L  LI+  L++ +     
Sbjct: 1153 ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSP 1212

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI----- 123
            G L+   ++ V+ E  + VA + +L   I  +S       S   S               
Sbjct: 1213 GLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWES 1272

Query: 124  -----------------AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
                             A     G  +       K      +     +     EL E   
Sbjct: 1273 DISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQ 1332

Query: 167  AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
                   + K            FTV V+   ++ A       K+ A+++A  EVL    
Sbjct: 1333 KWQFELSKAKDFD--------SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 1383


>gi|254673607|emb|CBA09131.1| ribonuclease III [Neisseria meningitidis alpha275]
          Length = 267

 Score = 95.0 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++KR+GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 40  AAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPKL 96

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 97  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 156

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   +  R          +D KT LQE   A+    P+Y++  + G  
Sbjct: 157 SFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 216

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
           +D  F V  ++  L    +    S+
Sbjct: 217 NDSMFVVSCDLGELGFVCRAKGTSR 241


>gi|158706454|sp|Q0CW42|DCL1_ASPTN RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1519

 Score = 95.0 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 86/255 (33%), Gaps = 36/255 (14%)

Query: 2    SALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
            S +     +E+++GY F    LL  A TH S   ++     Y+ LEFLGD +L ++    
Sbjct: 1230 SEIDLCRRVEEKLGYHFRYPRLLHSAFTHPSYPSAWARVPCYQSLEFLGDALLDMVCVED 1289

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS----- 113
            LF  F       L+    ++VS +    +A +L L + +   S   +   +         
Sbjct: 1290 LFRRFPDRDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLSYFSSALQSQITHYAEEAQAA 1349

Query: 114  --------------------IQADVVESLIAALYLDGGIE------VAGTFVDKYWKQRA 147
                                   D+VE+ + A+++D               +  Y+   A
Sbjct: 1350 ASQSDVAVDYWTLTQDPPKVCLPDMVEAYLGAVFVDSNFRFEEVEVFFQQHIKPYFHDMA 1409

Query: 148  LKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMD 205
            +      R   T L     +    +    K     G D D       V +       G+ 
Sbjct: 1410 IYDTFANRHPTTFLHNKLTNEYGCLNYCLKAGEIPGADGDASTVLAAVIVHDTILTTGVA 1469

Query: 206  CSKRAAEQVAAAEVL 220
             S R A+  A+   L
Sbjct: 1470 SSGRYAKVKASENAL 1484



 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 13/100 (13%)

Query: 11   KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58
            K++G   +      +ALT        H S    +     ++YERLEFLGD  L +  S  
Sbjct: 1031 KKLGLEIS-LEYALEALTKDSDNTHEHRSQQVHMQRGMGKNYERLEFLGDCFLKMATSIS 1089

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            LFN      E +  V    L+        A + +L  FIR
Sbjct: 1090 LFNQHPDDNEFDYHVNRMCLICNRNLFNSAVKKELYQFIR 1129


>gi|218767809|ref|YP_002342321.1| ribonuclease III [Neisseria meningitidis Z2491]
 gi|22654074|sp|Q9JVD3|RNC_NEIMA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|121051817|emb|CAM08123.1| putative ribonuclease III [Neisseria meningitidis Z2491]
          Length = 239

 Score = 95.0 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 12  AAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 69  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   + +R  +       +D KT LQE   A+    P+Y++  + G  
Sbjct: 129 SFDADFNTAEKVVRHLFAERVRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 188

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
           +D  F +  ++  L    +    S+
Sbjct: 189 NDSMFVISCDLGELGFVCRAKGTSR 213


>gi|298369788|ref|ZP_06981104.1| ribonuclease III [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281248|gb|EFI22737.1| ribonuclease III [Neisseria sp. oral taxon 014 str. F0314]
          Length = 302

 Score = 95.0 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 6/206 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +++R+G+ F    LL++ALTH S      ++ ER EF+GD IL   I+ +LF+ F   
Sbjct: 75  QAIQRRLGHKFVRIELLQQALTHRSF---NAKNNERFEFVGDAILNYSIAKMLFDAFPKL 131

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    +LV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 132 TEGELSRLRANLVNEHVLAEIALEMNIGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 191

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D G   A   V   + +R   +      +D KT LQE   A+    P+Y++  + G  
Sbjct: 192 SFDAGFAAAEEVVRHLFAERVKRVDFKNQGKDNKTVLQEALQARHLPLPKYRIEEQVGGV 251

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKR 209
            D RF V  ++  L    +    +++
Sbjct: 252 KDSRFVVSCDLGELGFICRAQGTNRK 277


>gi|218663008|ref|ZP_03518938.1| ribonuclease III [Rhizobium etli IE4771]
          Length = 206

 Score = 95.0 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 94/153 (61%), Positives = 122/153 (79%)

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           R N LVSAETC+ VA EL+L  +IR  +D++K     M +++ADVVESLIAA+YLDGG+E
Sbjct: 47  RLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVESLIAAIYLDGGLE 106

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
           VA  F+ +YW+ RA+++   +RDAKTELQEW+HAKFGVTP Y+V  RSGPDHDPRF V V
Sbjct: 107 VARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDERSGPDHDPRFKVTV 166

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           E++G+ P  G++ SKRAAEQVAA ++L+REGIW
Sbjct: 167 EVAGIKPETGVERSKRAAEQVAATKMLEREGIW 199


>gi|238793773|ref|ZP_04637394.1| Ribonuclease 3 [Yersinia intermedia ATCC 29909]
 gi|238726837|gb|EEQ18370.1| Ribonuclease 3 [Yersinia intermedia ATCC 29909]
          Length = 204

 Score = 94.6 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 96/190 (50%), Gaps = 6/190 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
            +ALTH S      +  ERLEFLGD IL  +I+  L++ F    EG++S    +LV   T
Sbjct: 2   LQALTHRSA---NSKHNERLEFLGDSILSFVIANELYHRFPRVDEGDMSRMRATLVRGNT 58

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I +    +  ++
Sbjct: 59  LAEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHMIERLILDWY 118

Query: 144 KQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200
           + R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P
Sbjct: 119 RSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEP 178

Query: 201 AQGMDCSKRA 210
             G   S+R 
Sbjct: 179 VIGTGSSRRK 188


>gi|94450856|gb|ABF19798.1| dicer-like 2 spliceform 2 [Arabidopsis thaliana]
          Length = 1374

 Score = 94.6 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 82/239 (34%), Gaps = 32/239 (13%)

Query: 10   EKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            E  + Y+F ++SLL +ALTH S         Y+RLEFLGD +L  LI+  L++ +     
Sbjct: 1139 ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSP 1198

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI----- 123
            G L+   ++ V+ E  + VA + +L   I  +S       S   S               
Sbjct: 1199 GLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWES 1258

Query: 124  -----------------AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
                             A     G  +       K      +     +     EL E   
Sbjct: 1259 DISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQ 1318

Query: 167  AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
                   + K            FTV V+   ++ A       K+ A+++A  EVL    
Sbjct: 1319 KWQFELSKAKDFD--------SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 1369


>gi|158706457|sp|A1CBC9|DCL1_ASPCL RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1534

 Score = 94.6 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 82/248 (33%), Gaps = 35/248 (14%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFD 64
             +E+++GY F    LL  A+TH S   +       Y+RLEFLGD +L ++    LF+ F 
Sbjct: 1252 QVEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVPCYQRLEFLGDSLLDMVCVEDLFHRFP 1311

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------------- 103
                  L+    ++VS +    +A +L     I+  S+                      
Sbjct: 1312 DRDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESEG 1371

Query: 104  ---RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155
                  V         D+VE+ + A+++D        E       K + Q       F  
Sbjct: 1372 AVDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFAN 1431

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAE 212
               T       A       Y +     P  D         V +     ++    S R A+
Sbjct: 1432 KHPTTFLHNRLANEFGCTNYCLKAGEMPAIDGMPAGVLAAVIVHNSVVSEATASSSRYAK 1491

Query: 213  QVAAAEVL 220
              A+   L
Sbjct: 1492 IRASERAL 1499



 Score = 44.1 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 31/74 (41%)

Query: 32   ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
                  ++YERLEFLGD  L +  S  LF       E +  V    L+  +     A++ 
Sbjct: 1078 FQRGMGKNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNTAKKR 1137

Query: 92   DLASFIRVSSDLRK 105
             +  +IR  S  R 
Sbjct: 1138 QIYRYIRSRSFSRH 1151


>gi|121713724|ref|XP_001274473.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
 gi|119402626|gb|EAW13047.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
          Length = 1552

 Score = 94.6 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 82/248 (33%), Gaps = 35/248 (14%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFD 64
             +E+++GY F    LL  A+TH S   +       Y+RLEFLGD +L ++    LF+ F 
Sbjct: 1270 QVEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVPCYQRLEFLGDSLLDMVCVEDLFHRFP 1329

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------------- 103
                  L+    ++VS +    +A +L     I+  S+                      
Sbjct: 1330 DRDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESEG 1389

Query: 104  ---RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155
                  V         D+VE+ + A+++D        E       K + Q       F  
Sbjct: 1390 AVDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFAN 1449

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAE 212
               T       A       Y +     P  D         V +     ++    S R A+
Sbjct: 1450 KHPTTFLHNRLANEFGCTNYCLKAGEMPAIDGMPAGVLAAVIVHNSVVSEATASSSRYAK 1509

Query: 213  QVAAAEVL 220
              A+   L
Sbjct: 1510 IRASERAL 1517



 Score = 44.1 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 31/74 (41%)

Query: 32   ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
                  ++YERLEFLGD  L +  S  LF       E +  V    L+  +     A++ 
Sbjct: 1096 FQRGMGKNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNTAKKR 1155

Query: 92   DLASFIRVSSDLRK 105
             +  +IR  S  R 
Sbjct: 1156 QIYRYIRSRSFSRH 1169


>gi|256372281|ref|YP_003110105.1| ribonuclease III [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008865|gb|ACU54432.1| ribonuclease III [Acidimicrobium ferrooxidans DSM 10331]
          Length = 263

 Score = 94.6 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 62/198 (31%), Positives = 88/198 (44%), Gaps = 6/198 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
            +AL H S S    +S ERLEFLGD ++ L++S  L+  +    EG L+   ++LVS  +
Sbjct: 26  RQALVHKSASRDPLDSNERLEFLGDAVIELVVSDYLYRRYPDVDEGRLTQVRSALVSRRS 85

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
              V  +  L   I V              + A+ VE+L  A+YL GG +++  FV    
Sbjct: 86  LGSVGVQGGLLEAITVGQADALGPV-----LAANAVEALAGAVYLAGGFQLSVAFVLAIL 140

Query: 144 KQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
                   G         L   A AK    P       SGPDHD R+ VVV++ G   A 
Sbjct: 141 GPSLERVDGDLVLGDYKSLLHQALAKLHHQPPRYKVSWSGPDHDRRYRVVVQLPGGFEAA 200

Query: 203 GMDCSKRAAEQVAAAEVL 220
           G   S++ AEQ A    +
Sbjct: 201 GEGASRKEAEQEACRLAI 218


>gi|145331748|ref|NP_001078101.1| DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA
            binding / double-stranded RNA binding / helicase/ nucleic
            acid binding / ribonuclease III [Arabidopsis thaliana]
 gi|332640404|gb|AEE73925.1| protein dicer-like 2 [Arabidopsis thaliana]
          Length = 1374

 Score = 94.6 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 82/239 (34%), Gaps = 32/239 (13%)

Query: 10   EKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            E  + Y+F ++SLL +ALTH S         Y+RLEFLGD +L  LI+  L++ +     
Sbjct: 1139 ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSP 1198

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI----- 123
            G L+   ++ V+ E  + VA + +L   I  +S       S   S               
Sbjct: 1199 GLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWES 1258

Query: 124  -----------------AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
                             A     G  +       K      +     +     EL E   
Sbjct: 1259 DISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQ 1318

Query: 167  AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
                   + K            FTV V+   ++ A       K+ A+++A  EVL    
Sbjct: 1319 KWQFELSKAKDFD--------SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 1369


>gi|218247605|ref|YP_002372976.1| Ribonuclease III [Cyanothece sp. PCC 8801]
 gi|257061062|ref|YP_003138950.1| ribonuclease III [Cyanothece sp. PCC 8802]
 gi|218168083|gb|ACK66820.1| Ribonuclease III [Cyanothece sp. PCC 8801]
 gi|256591228|gb|ACV02115.1| ribonuclease III [Cyanothece sp. PCC 8802]
          Length = 236

 Score = 94.6 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 8/221 (3%)

Query: 5   RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  TL +++G +     N   L+ ALTH +IS    ++Y++LEFLGD ++ L  + LL  
Sbjct: 11  QLRTLIQKLGLSEQSPVNYFWLDLALTHPTISQE--KNYQQLEFLGDSVIRLAAAELLLE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +A  GE +   + +VS  T +++A    L S++ VS    KD    ++ +       
Sbjct: 69  TYPNAPVGEFAALRSMMVSDRTLAELADSFTLESYLLVSDSAAKDKVGRVSRLADAFEAV 128

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL---QEWAHAKFGVTPEYKVT 178
           L A       +E+   ++D+  K +A +  +       +    +        +      T
Sbjct: 129 LGALYLSTHTMELIRPWLDELLKVKAEEIRQDPARQNYKDAVQEWTQAQYKLLPEYRVQT 188

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            +S P   P F   V +       G   SK+ AEQ AA + 
Sbjct: 189 IKSLPTEQPYFLAEVWLQNRKLGSGEGRSKKMAEQAAAKDA 229


>gi|269214809|ref|ZP_05987185.2| ribonuclease III [Neisseria lactamica ATCC 23970]
 gi|269208949|gb|EEZ75404.1| ribonuclease III [Neisseria lactamica ATCC 23970]
          Length = 267

 Score = 94.6 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 40  AAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPKL 96

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 97  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 156

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   +  R  +       +DAKT LQE   A+    P+Y++  + G  
Sbjct: 157 SFDADFNTAEKVVRHLFADRVRRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIGHA 216

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
           +D  F +  ++  L    +    S+
Sbjct: 217 NDSMFVISCDLGELGFVCRAKGTSR 241


>gi|296171390|ref|ZP_06852723.1| ribonuclease III [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894165|gb|EFG73924.1| ribonuclease III [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 237

 Score = 94.6 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 101/208 (48%), Gaps = 9/208 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
             L + +G    +  LL  ALTH S ++ +    + ERLEFLGD +LGL I+  L++   
Sbjct: 5   EDLLEALGVELPD-ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDELYHRHP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              EG+L+    S+V+ +  + VAR+L    L   + +         +  +SI AD +ES
Sbjct: 64  DRSEGDLAKLRASVVNTQALADVARKLSADGLGVHLFLGRGEANTGGADKSSILADGMES 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A+YL  GI+ A   + + +      +       D KT LQE   A+    P Y VT 
Sbjct: 124 LLGAIYLQHGIDTAREVILRLFGGLLDAAPTLGAGLDWKTSLQELTAARGMGAPSYVVTS 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            +GPDHD  FT VV +       G+  S
Sbjct: 184 -TGPDHDKEFTAVVVVMDTEYGSGVGRS 210


>gi|194476942|ref|YP_002049121.1| putative ribonuclease III [Paulinella chromatophora]
 gi|171191949|gb|ACB42911.1| putative ribonuclease III [Paulinella chromatophora]
          Length = 246

 Score = 94.2 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 9   LEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LEK  G    NR L  +++ALTH+S       ++E+LEFLGD +L L  +  L +H+ + 
Sbjct: 22  LEKLDGINLRNRDLAMVDEALTHTSA--ELGINHEKLEFLGDAVLRLAAAEHLLSHYPTL 79

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
             G+ S     LVS    +++     + + IR+ +    D  +  T         + A  
Sbjct: 80  SVGQSSALRAQLVSDRWLAEIGESCGIETVIRIGAAASGDQAARQTLRAESTEALIGALY 139

Query: 127 YLDGGIEVAGTFV---DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
                                  AL +  +  + K+ LQEW+ A+    P Y+    +  
Sbjct: 140 SSWENSLEPVNHWLSLHWQRSSIALLTDPYCYNWKSALQEWSQAEGLGLPNYRSKEINRL 199

Query: 184 DHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             D  RF   V I      +G   ++R AEQ AA   L    I
Sbjct: 200 HGDLSRFHSCVFIETKYLGEGFGGARREAEQQAARSALNSIKI 242


>gi|15676584|ref|NP_273728.1| ribonuclease III [Neisseria meningitidis MC58]
 gi|22654075|sp|Q9K0C8|RNC_NEIMB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|7225914|gb|AAF41104.1| ribonuclease III [Neisseria meningitidis MC58]
 gi|261392941|emb|CAX50526.1| ribonuclease III (RNase III) [Neisseria meningitidis 8013]
 gi|316983658|gb|EFV62639.1| ribonuclease III [Neisseria meningitidis H44/76]
 gi|325139865|gb|EGC62396.1| ribonuclease III [Neisseria meningitidis CU385]
 gi|325200628|gb|ADY96083.1| ribonuclease III [Neisseria meningitidis H44/76]
          Length = 239

 Score = 94.2 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 12  AAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 69  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   +  R  +       +D KT LQE   A+    P+Y++  + G  
Sbjct: 129 SFDADFNTAEKVVRHLFADRVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGYA 188

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
           +D  F +  ++  L    +    S+
Sbjct: 189 NDSMFVISCDLGELGFVCRAKGTSR 213


>gi|255017842|ref|ZP_05289968.1| ribonuclease III [Listeria monocytogenes FSL F2-515]
          Length = 158

 Score = 94.2 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 6/149 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  ++  L++ +G+ F N  LL++A THSS  + ++    +  ERLEFLGD +L L +S
Sbjct: 1   MN--QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LFN +    EG ++    ++V   +  + A  +  + ++R+     K       ++ A
Sbjct: 59  DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSXYVRLGKGEEKAGGRTRPALLA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
           DV ES I ALYLD GI+   TF+++    
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFP 147


>gi|72383017|ref|YP_292372.1| RNAse III [Prochlorococcus marinus str. NATL2A]
 gi|72002867|gb|AAZ58669.1| RNAse III [Prochlorococcus marinus str. NATL2A]
          Length = 247

 Score = 94.2 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 86/209 (41%), Gaps = 5/209 (2%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
              N   + ++LTHSS +     +YE LEFLGD +L L+ S  + N +   + GE S   
Sbjct: 32  KIKNILYINESLTHSSANSEI--NYENLEFLGDAVLRLIASDFIKNKYPYMQVGERSELR 89

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           + LVS     +V +++++ S + + +   +D  +  T         + A       +E  
Sbjct: 90  SHLVSDLWLEEVGKKIEINSVLVIGNKALRDKSANATIQAEATEALIGALYESLTIVEPI 149

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS---GPDHDPRFTVV 192
             ++  +W++++ +          +       +                  D+  RF   
Sbjct: 150 KDWLIPFWEEKSKEVLADPHKKNYKSALQELTQSKGLSIPIYKTIEIDKKHDNPKRFFCN 209

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           V +   + A+G   S + AE+ AA++ LK
Sbjct: 210 VYVKNRSIAEGSGKSIKQAEKNAASKALK 238


>gi|146281615|ref|YP_001171768.1| ribonuclease III [Pseudomonas stutzeri A1501]
 gi|145569820|gb|ABP78926.1| ribonuclease III [Pseudomonas stutzeri A1501]
          Length = 208

 Score = 93.8 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/195 (35%), Positives = 94/195 (48%), Gaps = 10/195 (5%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
             ALTH S +     + ERLEFLGD IL  +    LFNHF  A+EG+LS     LV  ET
Sbjct: 2   LLALTHRSYA---GRNNERLEFLGDAILNFVAGEALFNHFPQAREGQLSRLRARLVKGET 58

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            + +AR  +L   +R+ S   K       SI AD +E+LI A+YLD G++VA   V  + 
Sbjct: 59  LAVLARGFELGDHLRLGSGELKSGGYRRESILADTLEALIGAIYLDAGMDVARERVIAWL 118

Query: 144 KQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGL 198
                        +D KT LQE+  ++    P Y+V    G  H   F V  ++   +  
Sbjct: 119 ANELQGLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEPHCRTFFVECQVALLNDK 178

Query: 199 APAQGMDCSKRAAEQ 213
               G   S+R AEQ
Sbjct: 179 --THGQGASRRIAEQ 191


>gi|262202009|ref|YP_003273217.1| ribonuclease III [Gordonia bronchialis DSM 43247]
 gi|262085356|gb|ACY21324.1| ribonuclease III [Gordonia bronchialis DSM 43247]
          Length = 262

 Score = 93.8 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 6/194 (3%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S ++      + ERLEFLGD +LG++I+  L+  +    EGEL+    S+V
Sbjct: 25  LLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVVITERLYLSYPDRPEGELAKIRASVV 84

Query: 80  SAETCSQVARELDLASFIRVSS---DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +    + VAR L      R                 SI AD +ESL  A++++ G+  + 
Sbjct: 85  NMHALADVARSLGPGGLGRHLYLGRGEEMTGGRDKDSILADGLESLFGAVFIEHGLATSK 144

Query: 137 TFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
             + + +     ++G            +   A+ G+ P       +GPDH+  FT V  +
Sbjct: 145 RVILRLFDDVIDRAGTLGAGLDWKTSLQELSAEQGLGPPQYQISSTGPDHNKEFTAVAVV 204

Query: 196 SGLAPAQGMDCSKR 209
           +G +   G+  +K+
Sbjct: 205 AGESLGNGVGRTKK 218


>gi|254804568|ref|YP_003082789.1| ribonuclease III family protein [Neisseria meningitidis alpha14]
 gi|254668109|emb|CBA04665.1| ribonuclease III family protein [Neisseria meningitidis alpha14]
 gi|254670529|emb|CBA06329.1| ribonuclease III [Neisseria meningitidis alpha153]
          Length = 310

 Score = 93.8 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++KR+GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 83  AAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPKL 139

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 140 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 199

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   + +R  +       +D KT LQE   A+    P+Y++  + G  
Sbjct: 200 SFDADFNTAEKVVRHLFAERVRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 259

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
           +D  F V  ++  L    +    S+
Sbjct: 260 NDSMFVVSCDLGELGFVCRAKGTSR 284


>gi|116788280|gb|ABK24820.1| unknown [Picea sitchensis]
          Length = 330

 Score = 93.8 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 87/246 (35%), Gaps = 23/246 (9%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLF 60
           S +    LE  + Y+F   +L+ +++TH+S     +   Y+RLEFLGD +L  LI+   +
Sbjct: 78  SNVNVRYLESLLKYSFRVHTLVVESVTHASYKEPSFSGCYQRLEFLGDAVLDYLITLYFY 137

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +     G L+   ++ V+ +  +Q A + +L   +R +S    +  +    + +    
Sbjct: 138 KTYPGLSPGLLTDLRSAAVNNDCYAQAAVKCNLHQQLRHASSELHNQITEFAKLISSSSA 197

Query: 121 SLIAALYLDGG---------------------IEVAGTFVDKYWKQRALKSGKFRRDAKT 159
           S                                    T +     +  L+     +  K 
Sbjct: 198 SGDHFFGWTTTEVAVPKVLGDLIESIAGAVLVDSEFDTQLVWNAMKPLLEPLVTPKTIKY 257

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAE 218
           +                    S  +      V V + G +  +     +KR A+++AA +
Sbjct: 258 QPVRELQELCQKEFYTCCFDDSQEEGTSTVKVEVRVKGDSYIETCEASNKRTAKKLAAEK 317

Query: 219 VLKREG 224
           VLK   
Sbjct: 318 VLKSLK 323


>gi|121634484|ref|YP_974729.1| ribonuclease III [Neisseria meningitidis FAM18]
 gi|120866190|emb|CAM09930.1| putative ribonuclease III [Neisseria meningitidis FAM18]
          Length = 267

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 40  AAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 96

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 97  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 156

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   +  R  +       +D KT LQE   A+    P+Y++  + G  
Sbjct: 157 SFDADFNTAEKVVRHLFADRVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 216

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
           +D  F V  ++  L    +    S+
Sbjct: 217 NDSMFVVSCDLGELGFVCRAKGTSR 241


>gi|295670335|ref|XP_002795715.1| RNase3 domain-containing protein [Paracoccidioides brasiliensis Pb01]
 gi|226284800|gb|EEH40366.1| RNase3 domain-containing protein [Paracoccidioides brasiliensis Pb01]
          Length = 1346

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 65/220 (29%), Gaps = 11/220 (5%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              +  R+GY F    LL  A TH+S     S    Y+RLEFLGD +L ++    L++ + 
Sbjct: 1095 QQIGDRLGYRFKYPRLLSSAFTHASYPTVWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYP 1154

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                  L+         +  S   +       ++                  +++E+ I 
Sbjct: 1155 DRDPQWLTEH-------KVFSNHLKMRGWKLKLQRLKASIHQTFGQRPVTLRNMLEAYIG 1207

Query: 125  ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ-EWAHAKFGVTPEYKVTFRSGP 183
            A+++D                +         D                            
Sbjct: 1208 AIFVDSNFSFEVVEDFFQQYPKKYFEDISIYDTFANKHPTACTLPRTAFMPAGEVDFVDA 1267

Query: 184  DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 F   V I     A+G+  S   A+  A+   L + 
Sbjct: 1268 AECRVF-AAVIIHDEFVAEGIASSAGYAKVKASENALAKL 1306



 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 12/93 (12%)

Query: 20   RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT        H +          ++YERLEFLGD  L +  S  LF       
Sbjct: 914  PELALEALTKDSDNTEEHRAEQIHFQRGMGKNYERLEFLGDCFLKMSTSISLFAMNADND 973

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            E +  V+   L+  +     A  L +  F+R  
Sbjct: 974  EFDFHVKRMCLICNQNLFNTAMSLGIYEFVRTQ 1006


>gi|255027417|ref|ZP_05299403.1| ribonuclease III [Listeria monocytogenes FSL J2-003]
          Length = 151

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 6/149 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S
Sbjct: 1   MN--QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LFN +    EG ++    ++V   +  + A  +  + ++R+     K       ++ A
Sbjct: 59  DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
           DV ES I ALYLD GI+   TF+++    
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFP 147


>gi|317420155|emb|CBN82191.1| Ribonuclease 3 [Dicentrarchus labrax]
          Length = 1569

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 65/211 (30%), Positives = 99/211 (46%), Gaps = 10/211 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + ++ E  IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1359 KLTSFEDSIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1418

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F   +   ++ V    T   AD++ES 
Sbjct: 1419 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQDFAITNDKTKRPVALR-TKTLADLLESF 1477

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R       +   D K++LQ+         K    P Y
Sbjct: 1478 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1537

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
            K     GP H   +TV V   G     G   
Sbjct: 1538 KTLQTVGPSHARTYTVAVYFKGERIGCGKGP 1568



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 49/114 (42%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 1023 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1082

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
              +        S +    A+  E+LI    L    ++A T              
Sbjct: 1083 LYAHGPDLCRESDLRHAMANCFEALIEHFLLTRQTQIAHTCRRMVRGAYKRCHF 1136



 Score = 40.7 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F  R LL+ A+TH S   ++  +
Sbjct: 939 LDKLIGYVFKERCLLQLAMTHPSHHLNFGMN 969


>gi|163786802|ref|ZP_02181250.1| hypothetical protein FBALC1_16492 [Flavobacteriales bacterium
           ALC-1]
 gi|159878662|gb|EDP72718.1| hypothetical protein FBALC1_16492 [Flavobacteriales bacterium
           ALC-1]
          Length = 247

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 6/205 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61
           +  L+K +G+   ++SL  KA TH S++    +    +YERLEF+GD +L  +I+  LF 
Sbjct: 20  FLELKKILGFKPKSKSLYIKAFTHRSMNIKNKNGNAINYERLEFVGDAMLSSVIAAYLFE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EG L+   + +VS E  +++ ++L L   ++          +   ++   +V +
Sbjct: 80  QVPHGDEGYLTKMRSKVVSREHLNELGKDLGLIDLVQSRIPKSNFGNNIHGNLFEALVGA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +          +     V   +       GK        ++     K   T +Y V   +
Sbjct: 140 IYLDKGYKFCEKFIYKRVINPYVDIETLEGKVISYKSLLIEWCQKEKN--TFDYNVYEDT 197

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDC 206
           G D    F+V + I+    ++    
Sbjct: 198 GKDELKHFSVKLSINDKVVSKARAT 222


>gi|307198394|gb|EFN79336.1| Endoribonuclease dcr-1 [Harpegnathos saltator]
          Length = 1479

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 1/140 (0%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             ++EKR+GY F NR+ L +A TH S S +   + Y+RLEFLGD +L  LI+  ++    +
Sbjct: 1277 DSIEKRLGYKFNNRAYLLQAFTHPSYSVNRITDCYQRLEFLGDAVLDFLITCHIYEFCGN 1336

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
               G L+   ++LV+  T + +A    L + +   +    ++ +     Q D   ++   
Sbjct: 1337 LSPGALTDLRSALVNNITFACLAVRYGLHTCLLAYAPQLHEMINRFVKFQEDRNYAINDE 1396

Query: 126  LYLDGGIEVAGTFVDKYWKQ 145
            L      E      +     
Sbjct: 1397 LLWVLLEEEDCNIAEYIDVP 1416


>gi|221126960|ref|XP_002167020.1| PREDICTED: similar to ribonuclease III, nuclear [Hydra
           magnipapillata]
          Length = 576

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 100/216 (46%), Gaps = 15/216 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTH--SSISHS--YQESYERLEFLGDRILGLLISTLLF 60
           ++ TLEK+IG  F + SLL KALTH    +      + +YE+LEFLGD IL  + S  L+
Sbjct: 354 KFVTLEKKIGVEFTHISLLVKALTHSVKGLDDETITRGNYEQLEFLGDAILKYICSDYLY 413

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            HF + +EG L++   SL++ +  ++ + E+DL  +I    +      +      +DV E
Sbjct: 414 KHFPNHQEGHLTLLRISLINLKCLAKASEEIDLIKYIVFHPNHEPS--TTNEKTFSDVFE 471

Query: 121 SLIAALYLDGG--IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE---- 174
           + +AAL+LD G         V    + +     +   + K++LQ+  +  +  T      
Sbjct: 472 AFLAALHLDKGLLHCQKLIEVCILSRLKEFILSQDWLEPKSQLQQCCNTYYNKTKPDKVE 531

Query: 175 ---YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              YK    S  +    F V V  +G     G   S
Sbjct: 532 HPVYKRIKLSTINGVQNFKVGVYFNGKRLGTGQGRS 567


>gi|158706447|sp|A4RKC3|DCL1_MAGO7 RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease DCL1; Includes: RecName:
            Full=ATP-dependent helicase DCL1
          Length = 1591

 Score = 93.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 80/266 (30%), Gaps = 54/266 (20%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            S ++ ++GY F N  LL  A  H S    +    SY+RLEFLGD +L ++    LF    
Sbjct: 1244 SQIKNKMGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLLDMVCVDYLFKKHP 1303

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102
                  L+    ++VS +    VA  L     +                           
Sbjct: 1304 DKDPQWLTEHKMAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEWAELVTKKREEARQ 1363

Query: 103  --------------LRKDVCSFMTSIQADVVESLIAALYLDGGIEV------AGTFVDKY 142
                                        D++E+ + AL++D G +           +  Y
Sbjct: 1364 LAVRRGQREEDYARDFWIEVHHPPKCLPDILEAYVGALFVDTGYDYSAVVGFFDRHIKPY 1423

Query: 143  WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD---------HDPRFTVVV 193
            +   ++      +   T +      +FG +    +     PD            +     
Sbjct: 1424 FADMSIYDMYSSKHPVTHITSIITTQFGCSSFRLMV-HEIPDDVQGEGLVTGAVKVVAAC 1482

Query: 194  EISGLAPAQGMDCSKRAAEQVAAAEV 219
             I G      +  S R A+   A + 
Sbjct: 1483 MIHGEVRCHAVAASGRYAKLAVAKQA 1508



 Score = 37.6 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 32   ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
                  ++YERLEFLGD  L +  S  L+   +  +      R    +  +     A E 
Sbjct: 1074 FQSGMGQNYERLEFLGDCFLKMATSIALYTLVEGDEFEYHVERML-DICNKNLLNWALES 1132

Query: 92   DLASFIR 98
            +L   IR
Sbjct: 1133 NLQEHIR 1139


>gi|145613552|ref|XP_363615.2| hypothetical protein MGG_01541 [Magnaporthe oryzae 70-15]
 gi|145020615|gb|EDK04744.1| hypothetical protein MGG_01541 [Magnaporthe oryzae 70-15]
          Length = 1534

 Score = 93.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 80/266 (30%), Gaps = 54/266 (20%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            S ++ ++GY F N  LL  A  H S    +    SY+RLEFLGD +L ++    LF    
Sbjct: 1187 SQIKNKMGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLLDMVCVDYLFKKHP 1246

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102
                  L+    ++VS +    VA  L     +                           
Sbjct: 1247 DKDPQWLTEHKMAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEWAELVTKKREEARQ 1306

Query: 103  --------------LRKDVCSFMTSIQADVVESLIAALYLDGGIEV------AGTFVDKY 142
                                        D++E+ + AL++D G +           +  Y
Sbjct: 1307 LAVRRGQREEDYARDFWIEVHHPPKCLPDILEAYVGALFVDTGYDYSAVVGFFDRHIKPY 1366

Query: 143  WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD---------HDPRFTVVV 193
            +   ++      +   T +      +FG +    +     PD            +     
Sbjct: 1367 FADMSIYDMYSSKHPVTHITSIITTQFGCSSFRLMV-HEIPDDVQGEGLVTGAVKVVAAC 1425

Query: 194  EISGLAPAQGMDCSKRAAEQVAAAEV 219
             I G      +  S R A+   A + 
Sbjct: 1426 MIHGEVRCHAVAASGRYAKLAVAKQA 1451



 Score = 37.6 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 32   ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
                  ++YERLEFLGD  L +  S  L+   +  +      R    +  +     A E 
Sbjct: 1017 FQSGMGQNYERLEFLGDCFLKMATSIALYTLVEGDEFEYHVERML-DICNKNLLNWALES 1075

Query: 92   DLASFIR 98
            +L   IR
Sbjct: 1076 NLQEHIR 1082


>gi|225430894|ref|XP_002269915.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1380

 Score = 93.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 92/243 (37%), Gaps = 25/243 (10%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +  S LE  + Y+F + SLL +ALTH S         Y+RLEFLGD +L  L++  L++ 
Sbjct: 1133 VNVSYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHK 1192

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-------------- 108
            +     G L+   ++ V+ +  +Q A +  L   I  SS                     
Sbjct: 1193 YPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVES 1252

Query: 109  -------SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
                   S    +  DV+ESL  A+ +D        F         L + +  +      
Sbjct: 1253 TFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARE 1312

Query: 162  QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                  K     +  V  ++G       T+ VE +G          KR A ++A+ EVLK
Sbjct: 1313 LGELCQKEHYDIKRVVVSQNGKA---SVTIEVEANGAKHKHTSTSDKRTATKLASKEVLK 1369

Query: 222  REG 224
               
Sbjct: 1370 SLK 1372


>gi|297735235|emb|CBI17597.3| unnamed protein product [Vitis vinifera]
          Length = 1340

 Score = 93.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 92/243 (37%), Gaps = 25/243 (10%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +  S LE  + Y+F + SLL +ALTH S         Y+RLEFLGD +L  L++  L++ 
Sbjct: 1093 VNVSYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHK 1152

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-------------- 108
            +     G L+   ++ V+ +  +Q A +  L   I  SS                     
Sbjct: 1153 YPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVES 1212

Query: 109  -------SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
                   S    +  DV+ESL  A+ +D        F         L + +  +      
Sbjct: 1213 TFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARE 1272

Query: 162  QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                  K     +  V  ++G       T+ VE +G          KR A ++A+ EVLK
Sbjct: 1273 LGELCQKEHYDIKRVVVSQNGKA---SVTIEVEANGAKHKHTSTSDKRTATKLASKEVLK 1329

Query: 222  REG 224
               
Sbjct: 1330 SLK 1332


>gi|183981795|ref|YP_001850086.1| ribonuclease III Rnc [Mycobacterium marinum M]
 gi|183175121|gb|ACC40231.1| ribonuclease III Rnc [Mycobacterium marinum M]
          Length = 241

 Score = 93.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 6/193 (3%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            L+  ALTH S ++      + ERLEFLGD +LGL I+  LF+      EG+L+    S+
Sbjct: 17  ELVTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDELFHRHPERSEGDLAKLRASV 76

Query: 79  VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           V+ +  + VAR L    L + + +         +  +SI AD +ESL+ A+YL  G+EVA
Sbjct: 77  VNTQALADVARHLSEHGLGAHMLLGRGEANTGGADKSSILADGMESLLGAIYLHHGMEVA 136

Query: 136 GTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
              + + +      +             +   A   +         +GPDH   FT VV 
Sbjct: 137 REAILRIFGPLLDAAPTLGAGLDWKTSLQELTASRSLGAPSYAVTSTGPDHHKEFTAVVV 196

Query: 195 ISGLAPAQGMDCS 207
           ++      G+  S
Sbjct: 197 VNNTEYGSGVGRS 209


>gi|118617606|ref|YP_905938.1| ribonuclease III [Mycobacterium ulcerans Agy99]
 gi|118569716|gb|ABL04467.1| ribonuclease III Rnc [Mycobacterium ulcerans Agy99]
          Length = 243

 Score = 93.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 6/193 (3%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            L+  ALTH S ++      + ERLEFLGD +LGL I+  LF+      EG+L+    S+
Sbjct: 19  ELVTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDELFHRHPERSEGDLAKLRASV 78

Query: 79  VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           V+ +  + VAR L    L + + +         +  +SI AD +ESL+ A+YL  G+EVA
Sbjct: 79  VNTQALADVARHLSDHGLGAHMLLGRGEANTGGADKSSILADGMESLLGAIYLHHGMEVA 138

Query: 136 GTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
              + + +      +             +   A   +         +GPDH   FT VV 
Sbjct: 139 REAILRIFGPLLDAAPTLGAGLDWKTSLQELTASRSLGAPSYAVTSTGPDHHKEFTAVVV 198

Query: 195 ISGLAPAQGMDCS 207
           ++      G+  S
Sbjct: 199 VNNTEYGSGVGRS 211


>gi|189908862|gb|ACE60552.1| dicer-like protein 2 [Brassica rapa]
          Length = 1392

 Score = 93.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 82/242 (33%), Gaps = 21/242 (8%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    +E  + Y F ++SLL +ALTH S         Y+RLEFLGD +L  LI+  L+  
Sbjct: 1146 VNVRYMESLLNYKFKDKSLLVEALTHGSYMIPEIPRCYQRLEFLGDSVLDYLITKHLYGE 1205

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            + +   G L+   ++ V+ E  +QVA + +L   +  +S       S   S    +    
Sbjct: 1206 YPNLSPGLLTDMRSASVNNECYAQVAVKSNLHKHVLHASHDLHKHISRTVSEFERLSSVQ 1265

Query: 123  IAALYLD-------------------GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
             +  +                              V     +  L         K     
Sbjct: 1266 SSFGWESEIAFPKVLGDVIESLAGAIHVDSGYNKEVVFACIKPLLGCMITPETVKLHPVR 1325

Query: 164  WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
                            +   + +  F V VE   ++ A       K+ A+++A  EVL  
Sbjct: 1326 ELTELCQKAQFELSKVKGFENGEAFFPVEVEAKEMSFAHTARAFDKKMAKKLAYKEVLNS 1385

Query: 223  EG 224
              
Sbjct: 1386 LK 1387


>gi|238784187|ref|ZP_04628200.1| Ribonuclease 3 [Yersinia bercovieri ATCC 43970]
 gi|238796735|ref|ZP_04640241.1| Ribonuclease 3 [Yersinia mollaretii ATCC 43969]
 gi|238714896|gb|EEQ06895.1| Ribonuclease 3 [Yersinia bercovieri ATCC 43970]
 gi|238719466|gb|EEQ11276.1| Ribonuclease 3 [Yersinia mollaretii ATCC 43969]
          Length = 204

 Score = 93.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/190 (34%), Positives = 96/190 (50%), Gaps = 6/190 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
            +ALTH S S    +  ERLEFLGD IL  +I+  L+  F    EG++S    +LV   T
Sbjct: 2   LQALTHRSASS---KHNERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNT 58

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I +    +  ++
Sbjct: 59  LAEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHMIERLILDWY 118

Query: 144 KQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200
           + R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P
Sbjct: 119 RSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEP 178

Query: 201 AQGMDCSKRA 210
             G   S+R 
Sbjct: 179 VIGTGSSRRK 188


>gi|315044595|ref|XP_003171673.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893]
 gi|311344016|gb|EFR03219.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893]
          Length = 1518

 Score = 93.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 34/251 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++ ++GY F    LL  A  H S          Y+RLEFLGD +L ++    LF  + 
Sbjct: 1236 NQIKSKLGYCFRYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------------- 103
                  L+    ++VS +    +A  L+L   +   S+                      
Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355

Query: 104  ---RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRR 155
                    +       D+VE+ + A+++D        +       +++ +       F  
Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAMFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFAN 1415

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT---VVVEISGLAPAQGMDCSKRAAE 212
                       A       Y +     P  D         V +     A+G+  S R A+
Sbjct: 1416 KHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTVRALAAVCVHDDIVAEGVAISPRHAK 1475

Query: 213  QVAAAEVLKRE 223
              A+   L+  
Sbjct: 1476 LKASQNALQIL 1486



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 16/112 (14%)

Query: 1    MSALRYSTLE--KRIGYAFANRSLLEKALTHSS------------ISHSYQESYERLEFL 46
            M +     LE  +++        L  +ALT  S                  ++YERLEFL
Sbjct: 1021 MESY-LIALEACEKLQLKIP-PELALEALTKDSENTEDYGMEQIKFQSGMGKNYERLEFL 1078

Query: 47   GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            GD  L +  S  LF       E +  V+   L+  +     A  L++  FIR
Sbjct: 1079 GDCFLKMATSISLFAMNPDNDEYDYHVKRMLLICNQNLFNNAIILEIFKFIR 1130


>gi|161869625|ref|YP_001598793.1| ribonuclease III [Neisseria meningitidis 053442]
 gi|161595178|gb|ABX72838.1| ribonuclease III [Neisseria meningitidis 053442]
          Length = 310

 Score = 93.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 83  AAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPKL 139

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+D+   + + +   K       SI AD +E++ AA+
Sbjct: 140 TEGELSRLRASLVNEGVLAEMAAEMDVGEGLYLGAGELKSGGFRRPSILADAMEAMFAAV 199

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   +  R          +D KT LQE   A+    P+Y++  + G  
Sbjct: 200 SFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 259

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
           +D  F +  ++  L         S+
Sbjct: 260 NDSMFVISCDLGELGFVCYAKGTSR 284


>gi|297832974|ref|XP_002884369.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330209|gb|EFH60628.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 2033

 Score = 93.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 84/231 (36%), Gaps = 16/231 (6%)

Query: 10   EKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            E  + Y+F ++SLL +ALTH S         Y+RLEFLGD +L  LI+  L++ +     
Sbjct: 1798 ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSP 1857

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
            G L+   ++ V+ E  + VA + +L   I  +S +     S   S               
Sbjct: 1858 GLLTDMRSASVNNECYALVAVKENLHKHILHASHVLHKHISRTVSEFEQSSLQSTFGWEC 1917

Query: 129  DGGIE--------------VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
            D                     +  +K     ++K           ++     +     +
Sbjct: 1918 DISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQ 1977

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
                  S       FTV V+   ++ A       K+ A+++A  EVL    
Sbjct: 1978 KSQFELSKAKDFNYFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 2028


>gi|156553056|ref|XP_001605287.1| PREDICTED: similar to dicer-1 [Nasonia vitripennis]
          Length = 1917

 Score = 93.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 81/239 (33%), Gaps = 32/239 (13%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y +LE+ IGY F NRS L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1657 YDSLERSIGYTFRNRSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1716

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A       + R  S     V      IQ +   S+  
Sbjct: 1717 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLNTVIDRFVRIQEENGHSISE 1776

Query: 125  ALYLDGGIEVAGTFVDKYWK---------------------------QRALKSGKFRRDA 157
              YL G  E       +  +                                        
Sbjct: 1777 EYYLIGEREFEEAEEAEDVEVPKALGDVFESLAGAIYLDSNMSLDAVWAVYFEIMKSEIE 1836

Query: 158  KTELQEWAHAKFGVTPEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAE 212
            +            +      T + G         R  V V++ G    +G+  + R A+
Sbjct: 1837 QFSANVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAK 1895



 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
            G++  + SL+ +ALT S+ +     + ERLE +GD  L   I+T LF  +++  EG+LS 
Sbjct: 1370 GHSGPSPSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLFCTYNNIHEGKLSH 1427

Query: 74   RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              +  VS     ++ R+  L   +  S     D            +E
Sbjct: 1428 LRSKQVSNLNLYRLGRQKMLGESMIASKFEPHDNWLPPCYYVPKELE 1474


>gi|302765743|ref|XP_002966292.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii]
 gi|300165712|gb|EFJ32319.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii]
          Length = 1730

 Score = 93.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 81/237 (34%), Gaps = 30/237 (12%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M+++ +  LE  IGY F  +S+L +A++H+S   +    Y+RLEF+GD +L  LI+  LF
Sbjct: 1379 MNSIDFEKLELAIGYKFQMKSVLVEAISHASRPSAGVPCYQRLEFVGDAVLDHLITRYLF 1438

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV- 119
              +     G L+    + V+ E  ++++ +      +R  S   +             + 
Sbjct: 1439 FRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHLHLRHGSSALEAQIKDFVKDIQSELD 1498

Query: 120  -----------------------ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
                                       A     G        V +   +  +        
Sbjct: 1499 KPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLAADEVWKVFERLLEPMVTPDTLPVH 1558

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
               ELQE    +            S        TV V + G+      +  K+ A++
Sbjct: 1559 PVRELQERCQQQAEGLEYRASREGSIA------TVEVFVDGVQIGCAQNTQKKMAQK 1609



 Score = 47.2 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 158  KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-----QGMD-CSKRAA 211
            +  L +    +    P+Y++   SGP H  RFT  V ++          +G    S + A
Sbjct: 1645 RQTLNDICLQRQWPMPQYRLLSESGPAHAKRFTYTVRVNTRERGWTDECEGQAMPSMKKA 1704

Query: 212  EQVAAAEVLKREGIW 226
            +  AA  +L+    W
Sbjct: 1705 KDSAALVLLEVLKQW 1719



 Score = 46.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  IG+      +L +ALT +S   ++  SYER E LGD  L  ++S  LF       
Sbjct: 1160 QLKHEIGFPIPAAKVL-EALTAASCQETF--SYERAELLGDAYLKWVVSRRLFIKHPRKH 1216

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+      VS     + A    L S+I+
Sbjct: 1217 EGQLTRMRQQTVSNMVLYEFAISKSLQSYIQ 1247


>gi|302793023|ref|XP_002978277.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii]
 gi|300154298|gb|EFJ20934.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii]
          Length = 1728

 Score = 93.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 81/237 (34%), Gaps = 30/237 (12%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M+++ +  LE  IGY F  +S+L +A++H+S   +    Y+RLEF+GD +L  LI+  LF
Sbjct: 1379 MNSIDFEKLELAIGYKFQMKSVLVEAISHASRPSAGVPCYQRLEFVGDAVLDHLITRYLF 1438

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV- 119
              +     G L+    + V+ E  ++++ +      +R  S   +             + 
Sbjct: 1439 FRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHLHLRHGSSALEAQIKDFVKDIQSELD 1498

Query: 120  -----------------------ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
                                       A     G        V +   +  +        
Sbjct: 1499 KPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLAADEVWKVFERLLEPMVTPDTLPVH 1558

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
               ELQE    +            S        TV V + G+      +  K+ A++
Sbjct: 1559 PVRELQERCQQQAEGLEYRASREGSIA------TVEVFVDGVQIGCAQNTQKKMAQK 1609



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 148  LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-----Q 202
            +++ K     +  L +    +    P+Y++   SGP H  RFT  V ++          +
Sbjct: 1635 MENDKANAFTRQTLNDICLQRQWPMPQYRLLSESGPAHAKRFTYTVRVNTRERGWTDECE 1694

Query: 203  GMD-CSKRAAEQVAAAEVLKREGIW 226
            G    S + A+  AA  +L+    W
Sbjct: 1695 GQAMPSMKKAKDSAALVLLEVLKQW 1719



 Score = 46.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  IG+      +L +ALT +S   ++  SYER E LGD  L  ++S  LF       
Sbjct: 1160 QLKHEIGFPIPAAKVL-EALTAASCQETF--SYERAELLGDAYLKWVVSRRLFIKHPRKH 1216

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+      VS     + A    L S+I+
Sbjct: 1217 EGQLTRMRQQTVSNMVLYEFAISKSLQSYIQ 1247


>gi|307448396|pdb|3O2R|B Chain B, Structural Flexibility In Region Involved In Dimer
           Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
           From Campylobacter Jejuni
 gi|307448398|pdb|3O2R|D Chain D, Structural Flexibility In Region Involved In Dimer
           Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
           From Campylobacter Jejuni
          Length = 144

 Score = 93.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/130 (34%), Positives = 73/130 (56%), Gaps = 1/130 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE+ + Y F +++LL  ALTH S       + ERLEFLGD +L L++   LF+ F 
Sbjct: 1   NIEKLEQSLTYEFKDKNLLIHALTHKSFXKK-SYNNERLEFLGDAVLDLVVGEYLFHKFA 59

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I 
Sbjct: 60  KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIG 119

Query: 125 ALYLDGGIEV 134
           A++L+ G E 
Sbjct: 120 AIHLEAGFEF 129


>gi|294504509|ref|YP_003568571.1| ribonuclease III [Yersinia pestis Z176003]
 gi|169749969|gb|ACA67487.1| Ribonuclease III [Yersinia pseudotuberculosis YPIII]
 gi|186699329|gb|ACC89958.1| ribonuclease III [Yersinia pseudotuberculosis PB1/+]
 gi|262362499|gb|ACY59220.1| ribonuclease III [Yersinia pestis D106004]
 gi|262366496|gb|ACY63053.1| ribonuclease III [Yersinia pestis D182038]
 gi|294354968|gb|ADE65309.1| ribonuclease III [Yersinia pestis Z176003]
          Length = 204

 Score = 93.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/190 (34%), Positives = 95/190 (50%), Gaps = 6/190 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
            +ALTH S S    +  ERLEFLGD IL  +I+  L+  F    EG++S    +LV   T
Sbjct: 2   LQALTHRSASS---KHNERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNT 58

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I      + +++
Sbjct: 59  LAEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIHTIERLILEWY 118

Query: 144 KQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200
             R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P
Sbjct: 119 HSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEP 178

Query: 201 AQGMDCSKRA 210
             G   S+R 
Sbjct: 179 VIGTGSSRRK 188


>gi|307448395|pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer
           Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
           From Campylobacter Jejuni
 gi|307448397|pdb|3O2R|C Chain C, Structural Flexibility In Region Involved In Dimer
           Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
           From Campylobacter Jejuni
          Length = 170

 Score = 93.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/134 (35%), Positives = 77/134 (57%), Gaps = 4/134 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  +    LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF
Sbjct: 25  MKNI--EKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLF 80

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E
Sbjct: 81  HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALE 140

Query: 121 SLIAALYLDGGIEV 134
           ++I A++L+ G E 
Sbjct: 141 AIIGAIHLEAGFEF 154


>gi|158312991|ref|YP_001505499.1| ribonuclease III [Frankia sp. EAN1pec]
 gi|158108396|gb|ABW10593.1| Ribonuclease III [Frankia sp. EAN1pec]
          Length = 306

 Score = 93.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 99/203 (48%), Gaps = 8/203 (3%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL++ALTH S ++      + ERLEFLGD +LGL+++  LF       EG+L+ +  
Sbjct: 23  DPELLDRALTHRSYAYENGGLPTNERLEFLGDAVLGLIVTAALFRRHPDLPEGQLAKQRA 82

Query: 77  SLVSAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           S+V+    + VAR +    +  ++ +             SI AD +E++I A+YL   ++
Sbjct: 83  SVVNMRALADVARRIGTAGIGPYLLLGRGEEATGGRDKPSILADTLEAVIGAVYLSNSLD 142

Query: 134 VAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           VA  FV + +              D KT LQE         P+Y VT   GPDH  RFT 
Sbjct: 143 VASGFVHRLFDPLLDEAAGRGAGLDWKTSLQEQTALLGLGPPDYAVTEA-GPDHAKRFTA 201

Query: 192 VVEISGLAPAQGMDCSKRAAEQV 214
              ++G    +G   SK+ AEQ 
Sbjct: 202 FARVAGEVLGEGEGGSKKEAEQR 224


>gi|296434189|tpg|DAA12515.1| TPA_exp: Dicer 1 protein [Naumovia castellii]
          Length = 610

 Score = 93.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 77/220 (35%), Gaps = 15/220 (6%)

Query: 18  ANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           ++++L   A  H S+ +   +         S ERLEFLGD  LG L++ +++  +  A E
Sbjct: 116 SDQNLENLAFIHRSLPNMNVKLTELQKTVMSNERLEFLGDSWLGALVAYIIYKKYPYANE 175

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVESLIAALY 127
           G LS    ++V+     ++  +L     ++ +           +T   AD VE+ I AL 
Sbjct: 176 GALSKMKEAIVNNNNLEKICEKLGFKERLKENIPRSSMKIKDRLTKNYADCVEAYIGALV 235

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDA-----KTELQEWAHAKFGVTPEYKVTFRSG 182
           +D              +       +              +    A               
Sbjct: 236 IDRFSTEFNDVALWLEELSEEHFIELGPMMVKEPLNKNAKGELGAFLQFNNIGAKISYKR 295

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +    F V V +       G   + R AEQ AA E L +
Sbjct: 296 LNDKSPFKVEVRLGNNLLGIGDGSNVREAEQRAAMEALAQ 335



 Score = 39.5 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 189 FTVVVEISGL--APAQGMDCSKRAAEQVAAAEVL 220
           F  V  I G+     +G   SK+ ++  +A + L
Sbjct: 562 FYTVCFIKGVGVEIGKGHGRSKKISQHKSAEDAL 595


>gi|330860319|emb|CBX70633.1| ribonuclease 3 [Yersinia enterocolitica W22703]
          Length = 204

 Score = 93.1 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 66/190 (34%), Positives = 94/190 (49%), Gaps = 6/190 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
            +ALTH S S    +  ERLEFLGD IL  +I+  L+  F    EG++S    +LV   T
Sbjct: 2   LQALTHRSASS---KHNERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNT 58

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I      +  ++
Sbjct: 59  LAEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHTIERLILAWY 118

Query: 144 KQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200
             R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P
Sbjct: 119 HSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEP 178

Query: 201 AQGMDCSKRA 210
             G   S+R 
Sbjct: 179 VIGTGSSRRK 188


>gi|310831171|ref|YP_003969814.1| putative dsRNA-specific ribonuclease III [Cafeteria roenbergensis
           virus BV-PW1]
 gi|309386355|gb|ADO67215.1| putative dsRNA-specific ribonuclease III [Cafeteria roenbergensis
           virus BV-PW1]
          Length = 362

 Score = 93.1 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 92/245 (37%), Gaps = 39/245 (15%)

Query: 19  NRSLLEKALTHSSISHS------------------------YQESYERLEFLGDRILGLL 54
           +    ++++TH S                              +SYERLE+LGDR++ L+
Sbjct: 56  HIEYFQESMTHKSYLKKDIFSNNILVKAKKELGNPEGLLELRDKSYERLEYLGDRVIKLI 115

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           +S  LF+ +    EG ++     +      S+++R++ L+ +  +S  +           
Sbjct: 116 VSMYLFHRYPKQDEGFMTKLQTVIEDKNNLSKMSRDMGLSKYFIISKQIENIRGREAEKF 175

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVT 172
             D+ E+   ALYL  G       +    + +   + K    ++ K +L  + H++    
Sbjct: 176 NEDIFEAFFGALYLSNGFNSCLELLLNLLESQIDYAEKLYRNKNYKDQLLRYYHSQKWGY 235

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLA-------------PAQGMDCSKRAAEQVAAAEV 219
           PEY      GP H   F + V+                     G+   KR AEQ A+   
Sbjct: 236 PEYYQIGEFGPSHKRNFIMGVKKDEHKETIITENNKLEIGLGYGVGNKKRDAEQSASKMA 295

Query: 220 LKREG 224
           L   G
Sbjct: 296 LILLG 300


>gi|289643138|ref|ZP_06475267.1| ribonuclease III [Frankia symbiont of Datisca glomerata]
 gi|289507030|gb|EFD28000.1| ribonuclease III [Frankia symbiont of Datisca glomerata]
          Length = 272

 Score = 93.1 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 6/198 (3%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LLE ALTH S ++      + ERLEFLGD +L L+++  LFN      EG+L+ +  
Sbjct: 23  DVDLLELALTHRSYAYEQGGLPTNERLEFLGDSVLSLVVTDALFNRHPDLPEGQLAKQRA 82

Query: 77  SLVSAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           S+V+    ++VAR L    +  ++ +             SI AD +E+LI A+YL  G+ 
Sbjct: 83  SVVNMRALAEVARTLGEKGIGPYLLLGRGEETTGGRDKASILADTLEALIGAVYLSSGLG 142

Query: 134 VAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
            A  FV + +     + +G+          +   A   + P        GPDH  RFT  
Sbjct: 143 SASEFVHRLFDPLLDVAAGRGAGLDWKTSLQERTASLLLGPPEYEVDEFGPDHAKRFTAR 202

Query: 193 VEISGLAPAQGMDCSKRA 210
             ++G     G   SK+ 
Sbjct: 203 AVVAGRVLGHGDGGSKKE 220


>gi|26553818|ref|NP_757752.1| ribonuclease III [Mycoplasma penetrans HF-2]
 gi|26453825|dbj|BAC44156.1| ribonuclease III [Mycoplasma penetrans HF-2]
          Length = 244

 Score = 93.1 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 78/221 (35%), Gaps = 3/221 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           L  + +  ++G       L  +ALTH+S ++  +   +Y+RLEFLGD ++   + +    
Sbjct: 13  LDVTKILNKLGIKTNKYYLYVEALTHNSYNNEKKVGYTYQRLEFLGDAVIS-KLISEFLF 71

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              S  E +++    +LV++E   + + EL L  +  +   +  +  +           +
Sbjct: 72  KNKSLDEQKMTEIRKNLVNSEIFKKASEELGLLDYAFIGKGINLENDTKKIKADLFEAFA 131

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
               +                      +            + + +       +    +++
Sbjct: 132 GAIFIDKGEDEVWKYLEKTILKYYENNELVNPIDYKSRIQELFQYNIAKKHKKAHFYYQT 191

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               +  F   +    +    G+  +K+ A++ AA    ++
Sbjct: 192 VEIENNMFKSSLIYDEIIYGVGVGKTKKEAQKSAAKIAYEK 232


>gi|297848414|ref|XP_002892088.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297337930|gb|EFH68347.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1962

 Score = 93.1 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 81/230 (35%), Gaps = 18/230 (7%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             ++ +  LE+ + + F  + LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF 
Sbjct: 1608 KSIDFVGLERALKFEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFF 1667

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD---- 117
             + S   G L+    + V+ E  ++VA +  L  ++R  S   +                
Sbjct: 1668 TYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSK 1727

Query: 118  ---------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
                       ++      +   I  A           A K  +         +      
Sbjct: 1728 PGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHP 1787

Query: 169  FGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGMDCSKRAAEQ 213
                 E       G ++         TV V I G+      +  K+ A++
Sbjct: 1788 VRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQK 1837



 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 1398 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRYLFLKYPQKH 1454

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1455 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1485



 Score = 39.5 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 158  KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMDCSKRA 210
            +  L +    K    P Y+     GP H  RFT  V ++            + M  S + 
Sbjct: 1886 RQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPM-PSVKK 1944

Query: 211  AEQVAAAEVLKREG 224
            A+  AA  +L+   
Sbjct: 1945 AKDSAAVLLLQLLN 1958


>gi|158300291|ref|XP_320248.4| AGAP012289-PA [Anopheles gambiae str. PEST]
 gi|157013088|gb|EAA00264.4| AGAP012289-PA [Anopheles gambiae str. PEST]
          Length = 1672

 Score = 93.1 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 86/248 (34%), Gaps = 31/248 (12%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              +E  +GY F NR+ L +A TH+S  S+S   SY++LEFLGD +L  L+S  ++    S
Sbjct: 1424 ERIEATLGYRFRNRTYLLQAFTHTSYTSNSLTGSYQQLEFLGDAVLDFLVSMYIYERNPS 1483

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM---TSIQADVVESL 122
               G+L+   ++LV+    + V    +L   I   S +  D             +   + 
Sbjct: 1484 MSPGQLTDLRSALVNNVNLACVLVRNELHRHILSQSPMLTDAIGKFVAVHRCHRNQGSNW 1543

Query: 123  IAALYLDGGIEVAGTFVDK-------------YWKQRALKSGKFRRDAKTELQEWAHAKF 169
            +  L  +    +A                    +                 L++      
Sbjct: 1544 VRLLTEESDTPMAEYVDVPKVLGDVLEALIGAIYLDSGNDLAATWEVCFRLLRDEIADFT 1603

Query: 170  GVTPEYKVTF-RSGPDHDPRFTV------VVEIS-------GLAPAQGMDCSKRAAEQVA 215
              TP   V      P+  P F+       VV +              G   +K  A++ A
Sbjct: 1604 RKTPIQVVRQLYEHPEASPHFSAPFVEEEVVYVKLSYTHRSQRQTVYGFGKNKDDAKRAA 1663

Query: 216  AAEVLKRE 223
            A   L + 
Sbjct: 1664 AKIALSKI 1671



 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 23   LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
            L +ALT  S +  +  + ER E LGD  L   +S  +     S  EG L+     +VS  
Sbjct: 1199 LLQALTTKSSADVF--NLERFEVLGDAFLKFAVSVYILFRHTSWHEGYLTTCKGRMVSNR 1256

Query: 83   TCSQVARELD 92
                 A    
Sbjct: 1257 NLLYCAMGYG 1266


>gi|210633204|ref|ZP_03297720.1| hypothetical protein COLSTE_01633 [Collinsella stercoris DSM 13279]
 gi|210159209|gb|EEA90180.1| hypothetical protein COLSTE_01633 [Collinsella stercoris DSM 13279]
          Length = 241

 Score = 93.1 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 72/195 (36%), Positives = 98/195 (50%), Gaps = 4/195 (2%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57
           MS   +    ++  G AF + SLL  A+TH S         SYERLEFLGD ILG +++ 
Sbjct: 1   MSIREKLERAQEICGRAFNDTSLLRSAITHPSAVEGEPVSASYERLEFLGDSILGSVVAL 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  +    EG+L+    SLVS  T S V REL +   I + +  +      M S   +
Sbjct: 61  SLFKTYGDFDEGKLTRLKVSLVSGATLSDVGRELGIDQVIILGASEQGTGARGMHSALEN 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           V E+L+ ALYLDGG E A  F+ +  K   A +  +   + K+ LQE   +     P YK
Sbjct: 121 VYEALVGALYLDGGWEAAEAFIMRTLKPHLATERAEHPSNPKSFLQECVQSDHMEAPSYK 180

Query: 177 VTFRSGPDHDPRFTV 191
           V    GP H+P FT 
Sbjct: 181 VVGEEGPAHEPTFTA 195


>gi|255589974|ref|XP_002535144.1| dicer-1, putative [Ricinus communis]
 gi|223523936|gb|EEF27239.1| dicer-1, putative [Ricinus communis]
          Length = 259

 Score = 92.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 19/220 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              +E+ + Y F NRSLLE+A T SS       SYERLE +GD +L LL +   +  + +
Sbjct: 32  LDGVEEILKYKFKNRSLLEEAFTDSSFP-GKCFSYERLEHVGDSVLNLLFTKEHYFKYPN 90

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
              G L+    + V  E  ++VA +     F+R    L ++             ++++  
Sbjct: 91  LPPGALTRLRAANVDTEKLARVAVKHGFHRFLRHKKPLLEEQIRE-------FSQAILEY 143

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
                G+      +    +            +   + +  + K      ++ +       
Sbjct: 144 PLHSNGLVDVPKVLADIVESAIGAVFIDSNSSVDTVWKKRNLKVKFVDLWRESMA----- 198

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVLKREG 224
                V V I      +G    K+  A   AA + L   G
Sbjct: 199 -----VDVFIDDQLVGRGTYGLKKEIAHNRAAKDALDNIG 233


>gi|152965344|ref|YP_001361128.1| ribonuclease III [Kineococcus radiotolerans SRS30216]
 gi|151359861|gb|ABS02864.1| Ribonuclease III [Kineococcus radiotolerans SRS30216]
          Length = 224

 Score = 92.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 3/193 (1%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LLE ALTH S ++      + ERLEFLGD +LGL+++  L+  F+   EG L+    
Sbjct: 4   DAGLLELALTHRSYAYEQGGLPTNERLEFLGDSVLGLVVTHELYTRFEDVSEGRLAKLRA 63

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           ++V++   + +AR LDL + +R+            +SI AD +E++I A +L  G++ A 
Sbjct: 64  AVVNSRALADIARGLDLGAHVRLGKGELGTGGRDKSSILADTMEAVIGAAFLSVGMDGAR 123

Query: 137 TFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
            FV +        S +           +   A  G+         SGPDH   FT    +
Sbjct: 124 EFVLRLTSPLMDSSERLGAGTDWKTALQELTASEGLGVPSYAITDSGPDHAKNFTADAVV 183

Query: 196 SGLAPAQGMDCSK 208
            G     G   SK
Sbjct: 184 GGTVLGHGEGRSK 196


>gi|284006739|emb|CBA71996.1| ribonuclease III [Arsenophonus nasoniae]
          Length = 204

 Score = 92.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 6/190 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           ++ALTH S S  +    ERLEFLGD IL  +I+  L++ F    EG++S    +LV   T
Sbjct: 2   KQALTHRSASSGH---NERLEFLGDSILSFVIANDLYHRFPKVDEGDMSRMRATLVRGNT 58

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV--DK 141
            +++ARE DL   +R+     K       SI AD +E+LI +++LD  I+     V    
Sbjct: 59  LAELAREFDLGECLRLGPGELKSGGFRRESILADTIEALIGSIFLDSDIQTTERIVLAWY 118

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-LAP 200
             +   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SG   P
Sbjct: 119 DTRLIEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVRVRGEAHDQEFTIHCQVSGIKEP 178

Query: 201 AQGMDCSKRA 210
            +G+  S+R 
Sbjct: 179 VEGVGSSRRK 188


>gi|260907271|ref|ZP_05915593.1| ribonuclease III [Brevibacterium linens BL2]
          Length = 234

 Score = 92.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/210 (25%), Positives = 80/210 (38%), Gaps = 4/210 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M     + L+K +G    +      ALTH S +       + ERLEFLGD +LGL+ +  
Sbjct: 1   MDTDTTAELQKSLGIDI-DPETFRLALTHRSFAFEAGGIPTNERLEFLGDSVLGLVATES 59

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+       EG L+   +++V+    + +AR   +   I +             SI AD 
Sbjct: 60  LYYDNPDLAEGSLAKMRSAVVNTRALASIARRHGIGPHILLGKGEELTGGRDKDSILADT 119

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKV 177
           VE+LI A ++  G E A  FV +        +             + A A   +      
Sbjct: 120 VEALIGATFVARGREEAFAFVHRLIDSMLSDAVNLGAGMDYKTTLQEAAADLDLGAVSYE 179

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              SGPDH   FT    +       G   S
Sbjct: 180 IVSSGPDHAMVFTATALLGANGWGTGDGSS 209


>gi|111225163|ref|YP_715957.1| ribonuclease III [Frankia alni ACN14a]
 gi|111152695|emb|CAJ64436.1| Ribonuclease III (RNase III) [Frankia alni ACN14a]
          Length = 272

 Score = 92.7 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 6/202 (2%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL++ALTH S ++      + ERLEFLGD +LGL+++  LF       EG+L+ +  
Sbjct: 23  DPELLDRALTHRSYAYEKGGLPTNERLEFLGDAVLGLVVTAALFLRHPDLPEGQLAKQRA 82

Query: 77  SLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           S+V+    + VAR +       ++ +             SI AD +E++I A+YL  G++
Sbjct: 83  SVVNMRALADVARGIGPDGLGPYLLLGRGEETTGGRDKASILADTLEAIIGAVYLSAGLD 142

Query: 134 VAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
            A  FV + +       +G+          +   A   + P   V   +GPDH  RFT  
Sbjct: 143 AASIFVHRLFDPLLDEAAGRGAGLDWKTSLQEQTALLALGPPEYVVEEAGPDHAKRFTAH 202

Query: 193 VEISGLAPAQGMDCSKRAAEQV 214
             I+G    +G   SK+ AEQ 
Sbjct: 203 ARIAGEPLGEGEGGSKKEAEQR 224


>gi|238788224|ref|ZP_04632019.1| Ribonuclease 3 [Yersinia frederiksenii ATCC 33641]
 gi|238723811|gb|EEQ15456.1| Ribonuclease 3 [Yersinia frederiksenii ATCC 33641]
          Length = 204

 Score = 92.7 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 66/190 (34%), Positives = 95/190 (50%), Gaps = 6/190 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
            +ALTH S S    +  ERLEFLGD IL  +I+  L+  F    EG++S    +LV   T
Sbjct: 2   LQALTHRSASS---KHNERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNT 58

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I      +  ++
Sbjct: 59  LAEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIHTIERLILDWY 118

Query: 144 KQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200
           + R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P
Sbjct: 119 RSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEP 178

Query: 201 AQGMDCSKRA 210
             G   S+R 
Sbjct: 179 VIGTGSSRRK 188


>gi|194097974|ref|YP_002001022.1| ribonuclease III [Neisseria gonorrhoeae NCCP11945]
 gi|239998445|ref|ZP_04718369.1| ribonuclease III [Neisseria gonorrhoeae 35/02]
 gi|240080149|ref|ZP_04724692.1| ribonuclease III [Neisseria gonorrhoeae FA19]
 gi|240117386|ref|ZP_04731448.1| ribonuclease III [Neisseria gonorrhoeae PID1]
 gi|240122943|ref|ZP_04735899.1| ribonuclease III [Neisseria gonorrhoeae PID332]
 gi|240125195|ref|ZP_04738081.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679]
 gi|240127651|ref|ZP_04740312.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035]
 gi|238690180|sp|B4RJT7|RNC_NEIG2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|193933264|gb|ACF29088.1| ribonuclease III [Neisseria gonorrhoeae NCCP11945]
          Length = 239

 Score = 92.3 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 12  TAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 69  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   + +R  +       +D KT LQE   A+    P+Y++  + G  
Sbjct: 129 SFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 188

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
           +D  F +  ++  L    +    S+
Sbjct: 189 NDSMFVISCDLGELGFVCRAKGTSR 213


>gi|170079136|ref|YP_001735774.1| ribonuclease III [Synechococcus sp. PCC 7002]
 gi|169886805|gb|ACB00519.1| ribonuclease III [Synechococcus sp. PCC 7002]
          Length = 258

 Score = 92.3 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 66/196 (33%), Positives = 95/196 (48%), Gaps = 9/196 (4%)

Query: 17  FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F    LL +ALTH S ++   E     ERLEFLGD +L  ++  LL+  +   +EGELS 
Sbjct: 7   FQRSPLLLQALTHRSFANEQPETIQDNERLEFLGDAVLKFIMGKLLYERYPDFQEGELSR 66

Query: 74  RFNSLVSAETC-SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              SL +     ++ A+ L L   +R+     K+       I ++  E+++ A +LD GI
Sbjct: 67  LRASLENNRHQLAEFAQVLGLDQILRLGKGAEKEGARQNPEILSNTFEAVVGAYFLDAGI 126

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDA-----KTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           E A  FV+      A +  +   D      K +LQEWA A  G  P+YK    SG DH  
Sbjct: 127 EAAIAFVETLVIPVADRLVQQPSDPLAQNFKGQLQEWALANHGEIPKYKTLNESGADHAK 186

Query: 188 RFTVVVEISGLAPAQG 203
            FTV V + G    +G
Sbjct: 187 TFTVAVYLQGQEWGRG 202


>gi|319410059|emb|CBY90393.1| ribonuclease III [Neisseria meningitidis WUE 2594]
          Length = 310

 Score = 92.3 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 83  AAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 139

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 140 TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 199

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   + +R  +       +D KT LQE   A+    P+Y++  + G  
Sbjct: 200 SFDADFNTAEKVVRHLFAERVRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 259

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
           +D  F +  ++  L    +    S+
Sbjct: 260 NDSMFVISCDLGELGFVCRAKGTSR 284


>gi|237732553|ref|ZP_04563034.1| ribonuclease III [Citrobacter sp. 30_2]
 gi|226908092|gb|EEH94010.1| ribonuclease III [Citrobacter sp. 30_2]
          Length = 204

 Score = 92.3 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 94/190 (49%), Gaps = 6/190 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           ++ALTH S S    +  ERLEFLGD IL  +I+  L++ F    EG++S    +LV   T
Sbjct: 2   QQALTHRSASS---KHNERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNT 58

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT--FVDK 141
            +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I+          
Sbjct: 59  LAELAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEQLILNWY 118

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200
             +   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P
Sbjct: 119 QTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEP 178

Query: 201 AQGMDCSKRA 210
             G   S+R 
Sbjct: 179 VVGTGSSRRK 188


>gi|224141703|ref|XP_002324204.1| dicer-like protein [Populus trichocarpa]
 gi|222865638|gb|EEF02769.1| dicer-like protein [Populus trichocarpa]
          Length = 1492

 Score = 92.3 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 102/237 (43%), Gaps = 18/237 (7%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLF 60
                  +LE ++GY F  + +L++A+TH+SI        Y+RLEFLGD +L LLI+  L+
Sbjct: 1118 KEDEIKSLESKLGYTFGVKFVLQEAMTHASIQEQGVTYCYQRLEFLGDSVLDLLITWHLY 1177

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-------------LRKDV 107
                    GEL+   ++ V+ +  +QVA + +L + +   S                 D 
Sbjct: 1178 QSHTDVDPGELTDLRSASVNNDNFAQVAVKQNLYTHLLHCSTLLQSQITEYVNSFHESDQ 1237

Query: 108  CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
             +       D++ES+  AL +D    + G +         + + +               
Sbjct: 1238 GTKAPKALGDLIESIAGALLIDTKFNLDGVWRIFKPLLSPIVTPEKLELPPLRELVELCD 1297

Query: 168  KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
              GV  + K T ++   H   +   V++       +G + +++AA+  AA+ +LK+ 
Sbjct: 1298 SIGVFVKEKCTKKAEMVHAQLW---VQLDNELLSGEGYEKNRKAAKGKAASCLLKKL 1351



 Score = 38.8 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 21   SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            SL+ +A+T  ++      S ERLE LGD +L   +S  LF  + +  EG+LS   +  V 
Sbjct: 927  SLILEAIT--TLRCCESFSMERLELLGDSVLKYAVSCHLFLKYPNKHEGQLSSWRSGAVC 984

Query: 81   AETCSQVARELDLASF 96
              T  ++  +  +  +
Sbjct: 985  NSTLHKLGTDCKVQGY 1000


>gi|293406009|ref|ZP_06650001.1| rnc [Escherichia coli FVEC1412]
 gi|306814369|ref|ZP_07448531.1| ribonuclease III [Escherichia coli NC101]
 gi|291428217|gb|EFF01244.1| rnc [Escherichia coli FVEC1412]
 gi|305851763|gb|EFM52215.1| ribonuclease III [Escherichia coli NC101]
 gi|313648245|gb|EFS12689.1| ribonuclease III [Shigella flexneri 2a str. 2457T]
 gi|320176131|gb|EFW51198.1| Ribonuclease III [Shigella dysenteriae CDC 74-1112]
 gi|320662723|gb|EFX30062.1| ribonuclease III [Escherichia coli O55:H7 str. USDA 5905]
 gi|323156225|gb|EFZ42384.1| ribonuclease III [Escherichia coli EPECa14]
 gi|323173115|gb|EFZ58746.1| ribonuclease III [Escherichia coli LT-68]
 gi|323177303|gb|EFZ62891.1| ribonuclease III [Escherichia coli 1180]
 gi|326345056|gb|EGD68800.1| Ribonuclease III [Escherichia coli O157:H7 str. 1044]
 gi|332092616|gb|EGI97688.1| ribonuclease III [Shigella boydii 3594-74]
 gi|333000427|gb|EGK20009.1| ribonuclease III [Shigella flexneri VA-6]
 gi|333000857|gb|EGK20429.1| ribonuclease III [Shigella flexneri K-218]
 gi|333001660|gb|EGK21227.1| ribonuclease III [Shigella flexneri K-272]
 gi|333015936|gb|EGK35271.1| ribonuclease III [Shigella flexneri K-227]
 gi|333016828|gb|EGK36154.1| ribonuclease III [Shigella flexneri K-304]
          Length = 204

 Score = 91.9 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 64/190 (33%), Positives = 94/190 (49%), Gaps = 6/190 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           ++ALTH S S    +  ERLEFLGD IL  +I+  L++ F    EG++S    +LV   T
Sbjct: 2   QQALTHRSASS---KHNERLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNT 58

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG--TFVDK 141
            +++ARE +L   +R+     K       SI AD VE+LI  ++LD  I+          
Sbjct: 59  LAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWY 118

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200
             +   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P
Sbjct: 119 QTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEP 178

Query: 201 AQGMDCSKRA 210
             G   S+R 
Sbjct: 179 VVGTGSSRRK 188


>gi|321458470|gb|EFX69538.1| hypothetical protein DAPPUDRAFT_329028 [Daphnia pulex]
          Length = 1597

 Score = 91.9 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 82/251 (32%), Gaps = 32/251 (12%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFD 64
            + TLE+ + + F NR  L +A +H+S  H+     Y+RLEFLGD +   LI+  L++   
Sbjct: 1348 FETLERSLNFRFGNRFYLLQAFSHASYHHNRMTSCYQRLEFLGDAVFDYLITKYLYDCRL 1407

Query: 65   SA-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                 G LS   ++LV+  T + +A       +++                Q     +  
Sbjct: 1408 FQLTPGALSDMRSALVNNVTFAVLAVRNGFHRYLKHLVPDVHQAIDRFVQQQEMCDHATP 1467

Query: 124  AALYLDGGIEVAGTFVDKYW----------------KQRALKSGKFRRDAKTELQEWAHA 167
               +L G  +       +                           +R       QE    
Sbjct: 1468 DEFFLIGTHDDPMAEAVEVPKVLGDIFESLVGAVFLDSDMSLDAVWRVFYPLIRQEIEAC 1527

Query: 168  KFGVTPEYKVTFRSGPDHDPRFT-------------VVVEISGLAPAQGMDCSKRAAEQV 214
               V      T         +F              V V  +G    +G+  + R A+  
Sbjct: 1528 TRVVPKSPIRTIYEKYPGKVQFKTLENLPDGRICIAVEVLNNGRLY-KGVGKNSRIAKNT 1586

Query: 215  AAAEVLKREGI 225
            AA   L + GI
Sbjct: 1587 AAKYALSQLGI 1597


>gi|238896018|ref|YP_002920754.1| ribonuclease III [Klebsiella pneumoniae NTUH-K2044]
 gi|238548336|dbj|BAH64687.1| ribonuclease III [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 204

 Score = 91.9 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 6/190 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           ++ALTH S S    +  ERLEFLGD IL  +I+  L++ F    EG++S    +LV   T
Sbjct: 2   QQALTHRSASS---KHNERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNT 58

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV--DK 141
            +++ARE +L   +R+     K       SI AD VE+LI  ++LD  I+     +    
Sbjct: 59  LAEIAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQNVERLILSWY 118

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200
             +   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P
Sbjct: 119 QTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEP 178

Query: 201 AQGMDCSKRA 210
             G   S+R 
Sbjct: 179 VVGTGSSRRK 188


>gi|304388061|ref|ZP_07370190.1| ribonuclease III [Neisseria meningitidis ATCC 13091]
 gi|304337918|gb|EFM04058.1| ribonuclease III [Neisseria meningitidis ATCC 13091]
          Length = 267

 Score = 91.9 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 40  AAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 96

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 97  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 156

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   +  R  +       +D KT LQE   A+    P+Y++  + G  
Sbjct: 157 SFDADFNTAEKVVRHLFADRVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGYA 216

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
           +D  F +  ++  L    +    S+
Sbjct: 217 NDSMFVISCDLGELGFVCRAKGTSR 241


>gi|293394829|ref|ZP_06639119.1| ribonuclease III [Serratia odorifera DSM 4582]
 gi|291422580|gb|EFE95819.1| ribonuclease III [Serratia odorifera DSM 4582]
          Length = 204

 Score = 91.9 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 66/190 (34%), Positives = 97/190 (51%), Gaps = 6/190 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
            +ALTH S S    +  ERLEFLGD IL  +I+  L++ F    EG++S    +LV   T
Sbjct: 2   LQALTHRSASS---KHNERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNT 58

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I+     +  ++
Sbjct: 59  LAEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVERLILDWY 118

Query: 144 KQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200
           + R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P
Sbjct: 119 RSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEP 178

Query: 201 AQGMDCSKRA 210
             G   S+R 
Sbjct: 179 VVGTGSSRRK 188


>gi|224109196|ref|XP_002315119.1| dicer-like protein [Populus trichocarpa]
 gi|222864159|gb|EEF01290.1| dicer-like protein [Populus trichocarpa]
          Length = 1408

 Score = 91.9 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 93/244 (38%), Gaps = 25/244 (10%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    LE  + Y+F + SLL +ALTH S         Y+RLEFLGD +L  LI+  L+  
Sbjct: 1153 VNVRYLESLLNYSFRDPSLLVEALTHGSYMLPEIPSCYQRLEFLGDAVLDYLITMHLYKE 1212

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-------------- 108
            +     G L+   ++ V+ +  +Q A + DL   I  +S                     
Sbjct: 1213 YPGMSPGLLTDLRSASVNNDCYAQSAVKGDLHKHILHTSQDLHKHIVETAEIFQKSSLGS 1272

Query: 109  -------SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
                   +    +  DV+ESL  A+ +D G      F         L +    R      
Sbjct: 1273 TFGWESETSFPKVLGDVIESLAGAILVDSGYNKEIVFQSIRPLLEPLITPATVRLHPARE 1332

Query: 162  QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220
                  K     +  V   +G   +   T+VV  +G+          K+ A+++A+ EVL
Sbjct: 1333 LSELCQKQHFDYKKSVVSYNGR--NASITIVVGANGVTFKHTATAADKKTAKKLASKEVL 1390

Query: 221  KREG 224
            K   
Sbjct: 1391 KSLK 1394


>gi|71042598|pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii
           From Mycobacterium Tuberculosis
          Length = 242

 Score = 91.9 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 8/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M   R   L   +G    +  LL  ALTH S ++      + ERLEFLGD +LGL I+  
Sbjct: 3   MIRSR-QPLLDALGVDLPD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDA 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQ 115
           LF+      EG+L+    S+V+ +  + VAR L    L   + +         +  +SI 
Sbjct: 61  LFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSIL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPE 174
           AD +ESL+ A+YL  G+E A   + + +      +             +   A  G+   
Sbjct: 121 ADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAP 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +   +GPDHD  FT VV +       G+  S
Sbjct: 181 SYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRS 213


>gi|15610062|ref|NP_217441.1| ribonuclease III [Mycobacterium tuberculosis H37Rv]
 gi|15842471|ref|NP_337508.1| ribonuclease III [Mycobacterium tuberculosis CDC1551]
 gi|31794102|ref|NP_856595.1| ribonuclease III [Mycobacterium bovis AF2122/97]
 gi|121638807|ref|YP_979031.1| ribonuclease III [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148662771|ref|YP_001284294.1| ribonuclease III [Mycobacterium tuberculosis H37Ra]
 gi|148824115|ref|YP_001288869.1| ribonuclease III [Mycobacterium tuberculosis F11]
 gi|167969555|ref|ZP_02551832.1| ribonuclease III [Mycobacterium tuberculosis H37Ra]
 gi|215404901|ref|ZP_03417082.1| ribonuclease III [Mycobacterium tuberculosis 02_1987]
 gi|215412768|ref|ZP_03421480.1| ribonuclease III [Mycobacterium tuberculosis 94_M4241A]
 gi|215428370|ref|ZP_03426289.1| ribonuclease III [Mycobacterium tuberculosis T92]
 gi|215431873|ref|ZP_03429792.1| ribonuclease III [Mycobacterium tuberculosis EAS054]
 gi|215447189|ref|ZP_03433941.1| ribonuclease III [Mycobacterium tuberculosis T85]
 gi|218754678|ref|ZP_03533474.1| ribonuclease III [Mycobacterium tuberculosis GM 1503]
 gi|224991299|ref|YP_002645988.1| ribonuclease III [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797986|ref|YP_003030987.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 1435]
 gi|254365562|ref|ZP_04981607.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551999|ref|ZP_05142446.1| ribonuclease III [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260187945|ref|ZP_05765419.1| ribonuclease III [Mycobacterium tuberculosis CPHL_A]
 gi|260202061|ref|ZP_05769552.1| ribonuclease III [Mycobacterium tuberculosis T46]
 gi|260206245|ref|ZP_05773736.1| ribonuclease III [Mycobacterium tuberculosis K85]
 gi|289444482|ref|ZP_06434226.1| ribonuclease III [Mycobacterium tuberculosis T46]
 gi|289448592|ref|ZP_06438336.1| ribonuclease III rnc [Mycobacterium tuberculosis CPHL_A]
 gi|289553284|ref|ZP_06442494.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 605]
 gi|289575632|ref|ZP_06455859.1| ribonuclease III rnc [Mycobacterium tuberculosis K85]
 gi|289746725|ref|ZP_06506103.1| ribonuclease III [Mycobacterium tuberculosis 02_1987]
 gi|289751594|ref|ZP_06510972.1| ribonuclease III rnc [Mycobacterium tuberculosis T92]
 gi|289755039|ref|ZP_06514417.1| ribonuclease III [Mycobacterium tuberculosis EAS054]
 gi|289759048|ref|ZP_06518426.1| ribonuclease III [Mycobacterium tuberculosis T85]
 gi|289763102|ref|ZP_06522480.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis GM
           1503]
 gi|297635545|ref|ZP_06953325.1| ribonuclease III [Mycobacterium tuberculosis KZN 4207]
 gi|297732544|ref|ZP_06961662.1| ribonuclease III [Mycobacterium tuberculosis KZN R506]
 gi|298526395|ref|ZP_07013804.1| ribonuclease III [Mycobacterium tuberculosis 94_M4241A]
 gi|306777216|ref|ZP_07415553.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu001]
 gi|306781126|ref|ZP_07419463.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu002]
 gi|306785762|ref|ZP_07424084.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu003]
 gi|306789802|ref|ZP_07428124.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu004]
 gi|306794615|ref|ZP_07432917.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu005]
 gi|306798860|ref|ZP_07437162.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu006]
 gi|306804705|ref|ZP_07441373.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu008]
 gi|306808897|ref|ZP_07445565.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu007]
 gi|306968996|ref|ZP_07481657.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu009]
 gi|306973333|ref|ZP_07485994.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu010]
 gi|307081039|ref|ZP_07490209.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu011]
 gi|307085639|ref|ZP_07494752.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu012]
 gi|313659876|ref|ZP_07816756.1| ribonuclease III [Mycobacterium tuberculosis KZN V2475]
 gi|54039242|sp|P66667|RNC_MYCBO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54041614|sp|P66666|RNC_MYCTU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|1405961|emb|CAA98974.1| PROBABLE RIBONUCLEASE III RNC (RNASE III) [Mycobacterium
           tuberculosis H37Rv]
 gi|13882776|gb|AAK47322.1| ribonuclease III [Mycobacterium tuberculosis CDC1551]
 gi|31619697|emb|CAD96637.1| PROBABLE RIBONUCLEASE III RNC (RNASE III) [Mycobacterium bovis
           AF2122/97]
 gi|121494455|emb|CAL72936.1| Probable ribonuclease III rnc (rnase III) [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|134151075|gb|EBA43120.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506923|gb|ABQ74732.1| ribonuclease III [Mycobacterium tuberculosis H37Ra]
 gi|148722642|gb|ABR07267.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis F11]
 gi|224774414|dbj|BAH27220.1| ribonuclease III [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319489|gb|ACT24092.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 1435]
 gi|289417401|gb|EFD14641.1| ribonuclease III [Mycobacterium tuberculosis T46]
 gi|289421550|gb|EFD18751.1| ribonuclease III rnc [Mycobacterium tuberculosis CPHL_A]
 gi|289437916|gb|EFD20409.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 605]
 gi|289540063|gb|EFD44641.1| ribonuclease III rnc [Mycobacterium tuberculosis K85]
 gi|289687253|gb|EFD54741.1| ribonuclease III [Mycobacterium tuberculosis 02_1987]
 gi|289692181|gb|EFD59610.1| ribonuclease III rnc [Mycobacterium tuberculosis T92]
 gi|289695626|gb|EFD63055.1| ribonuclease III [Mycobacterium tuberculosis EAS054]
 gi|289710608|gb|EFD74624.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis GM
           1503]
 gi|289714612|gb|EFD78624.1| ribonuclease III [Mycobacterium tuberculosis T85]
 gi|298496189|gb|EFI31483.1| ribonuclease III [Mycobacterium tuberculosis 94_M4241A]
 gi|308214363|gb|EFO73762.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu001]
 gi|308326021|gb|EFP14872.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu002]
 gi|308329542|gb|EFP18393.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu003]
 gi|308333690|gb|EFP22541.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu004]
 gi|308337033|gb|EFP25884.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu005]
 gi|308340847|gb|EFP29698.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu006]
 gi|308344741|gb|EFP33592.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu007]
 gi|308348661|gb|EFP37512.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu008]
 gi|308353417|gb|EFP42268.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu009]
 gi|308357236|gb|EFP46087.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu010]
 gi|308361245|gb|EFP50096.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu011]
 gi|308364828|gb|EFP53679.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu012]
 gi|323718456|gb|EGB27628.1| ribonuclease III rnc [Mycobacterium tuberculosis CDC1551A]
 gi|326904540|gb|EGE51473.1| ribonuclease III rnc [Mycobacterium tuberculosis W-148]
 gi|328457760|gb|AEB03183.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 4207]
          Length = 240

 Score = 91.9 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 8/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M   R   L   +G    +  LL  ALTH S ++      + ERLEFLGD +LGL I+  
Sbjct: 1   MIRSR-QPLLDALGVDLPD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDA 58

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQ 115
           LF+      EG+L+    S+V+ +  + VAR L    L   + +         +  +SI 
Sbjct: 59  LFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSIL 118

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPE 174
           AD +ESL+ A+YL  G+E A   + + +      +             +   A  G+   
Sbjct: 119 ADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAP 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +   +GPDHD  FT VV +       G+  S
Sbjct: 179 SYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRS 211


>gi|254526942|ref|ZP_05138994.1| ribonuclease III [Prochlorococcus marinus str. MIT 9202]
 gi|221538366|gb|EEE40819.1| ribonuclease III [Prochlorococcus marinus str. MIT 9202]
          Length = 249

 Score = 91.9 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 96/227 (42%), Gaps = 10/227 (4%)

Query: 3   ALRYSTLEKRIGYAFANRSLLE---KALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
            ++     + I     + S+++   +A  HSS       +YE+LEF GD +L L  S  +
Sbjct: 21  NIKSKRFSEII--RTQDISVIQDFNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASNFI 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              +     GE S     +VS E  +++  E+D+   I        D  S  T I     
Sbjct: 77  EKKYPHMSVGERSELRAQIVSDEWLTKLGGEIDIEKLIIKGPKALGDENSKNTIIGESTE 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKV 177
             + A       I+    ++D  W++ +       ++  +KT LQEW  +K    P YK+
Sbjct: 137 ALIGAVYKCFNSIQEVNLWLDDIWEKDSEIFLKAPYKFKSKTVLQEWCQSKGFDLPVYKI 196

Query: 178 TFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              S  + DP RF+  + I GL  +     S + AE  AA  ++++ 
Sbjct: 197 IEFSKKNGDPKRFSCDIYIEGLKESSAFGKSHKQAETNAARVLIEKL 243


>gi|124026759|ref|YP_001015874.1| putative ribonuclease III [Prochlorococcus marinus str. NATL1A]
 gi|123961827|gb|ABM76610.1| putative ribonuclease III [Prochlorococcus marinus str. NATL1A]
          Length = 247

 Score = 91.9 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
              N   + ++LTHSS +     +YE LEFLGD +L L+ S  + N +   + GE S   
Sbjct: 32  KIKNILYINESLTHSSANSEI--NYENLEFLGDAVLRLIASDFIKNKYPYMQVGERSELR 89

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           + LVS +   +V +++++ + + + +   +D  +  T         + A       +E  
Sbjct: 90  SHLVSDQWLEEVGKKIEIKNVLVIGNKALRDKSASATIQAEATEALIGALYESLTVLEPI 149

Query: 136 GTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVV 192
             ++  +W++++ +      +++ K+ LQE   +K    P YK T       +P RF   
Sbjct: 150 KDWLIPFWEEKSKEVLADPHKKNYKSALQELTQSKGLSIPIYKTTEIDKKHDNPERFFCN 209

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           V +   + A+G   S + AE+ AA++ LK
Sbjct: 210 VYVKNRSIAEGSGKSMKQAEKNAASKALK 238


>gi|255547506|ref|XP_002514810.1| ATP binding protein, putative [Ricinus communis]
 gi|223545861|gb|EEF47364.1| ATP binding protein, putative [Ricinus communis]
          Length = 1388

 Score = 91.5 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 89/254 (35%), Gaps = 36/254 (14%)

Query: 1    MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLIS 56
            M+    +    LE  + Y+F +  LL +ALTH S         Y+RLEFLGD +L  LI+
Sbjct: 1135 MNPEKYVNICHLESLLKYSFRDPCLLVEALTHGSYMLPEIPRCYQRLEFLGDSVLDYLIT 1194

Query: 57   TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
              L+  +     G L+   ++ V+ +  +Q A    L  +I  +S           +   
Sbjct: 1195 VHLYEKYPGMSPGLLTDMRSASVNNDCYAQSAVREGLHKYILHASQKLHKDIVSTVANCK 1254

Query: 117  DVVESLI----------------------AALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154
            +                            A     G  +       +   +  +     R
Sbjct: 1255 EFSSESTFGWESEISFPKVLGDVIESLAGAIFVDSGYNKEVVFNSIRPLLEPLITPETIR 1314

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRA 210
                 EL E    +     +  V+  +G       TV VE +G+        S    ++ 
Sbjct: 1315 LHPTRELTELCQKQHFDRRKPVVSRNNGMSC---VTVEVEANGVVF---KHTSAAAERKT 1368

Query: 211  AEQVAAAEVLKREG 224
            A+++A+ EVL+   
Sbjct: 1369 AKRLASKEVLRALK 1382


>gi|256379958|ref|YP_003103618.1| ribonuclease III [Actinosynnema mirum DSM 43827]
 gi|255924261|gb|ACU39772.1| ribonuclease III [Actinosynnema mirum DSM 43827]
          Length = 267

 Score = 91.5 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 7/211 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
           ++  + L + +G    +  LL  ALTH S ++        ERLEFLGD +LGL+++  L+
Sbjct: 10  SVDRTPLLEALGV-PLDAELLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLY 68

Query: 61  NHFDSAKEGELSVRFNSLVSAET---CSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
                  EG+L+    S+V+       ++      L   + +             SI AD
Sbjct: 69  RAHPDRPEGQLAKLRASVVNMHALAGVARGLGADGLGGHLLLGRGEELTGGRDKASILAD 128

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYK 176
            +E++I A+YL  GI+ A   V   +     ++             +   A  G+     
Sbjct: 129 GLEAVIGAVYLQFGIDTARQLVHHLFDPLLAEAPLRGAGLDWKTSLQELTASSGLGVPEY 188

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                GPDH   FT  V + G     G   +
Sbjct: 189 RVDDQGPDHRKEFTATVYVGGKPHGSGDGRT 219


>gi|207109381|ref|ZP_03243543.1| ribonuclease III [Helicobacter pylori HPKX_438_CA4C1]
          Length = 197

 Score = 91.5 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 99/180 (55%), Gaps = 4/180 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 20  YTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 77

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA+  +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 78  YDEGKLSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEEISKGREKPSILSSAFEALMAG 137

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +   +        D KT LQE   A+F V P Y++    GP
Sbjct: 138 VYLEAGLAKVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQAQFCVIPTYQLLKEKGP 197


>gi|87240866|gb|ABD32724.1| Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease
            III, bacterial [Medicago truncatula]
          Length = 1939

 Score = 91.1 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 78/229 (34%), Gaps = 18/229 (7%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            ++ +  LE  +   F ++ LL +++TH+S   S    Y+RLEF+GD +L  LI+  LF  
Sbjct: 1598 SVDFDALEGALNIKFKDKGLLIESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFS 1657

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD----- 117
            +     G L+    + V+ E  ++V  + +L   +R  S   +           D     
Sbjct: 1658 YTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKDFVKEVQDELSKP 1717

Query: 118  --------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
                      ++      +   I  A             K  +         +       
Sbjct: 1718 GFNSFGLGDCKAPKVLGDILESIAGAIFLDSGRNTAVVWKVFQPLLHPMVTPETLPMHPV 1777

Query: 170  GVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGMDCSKRAAEQ 213
                E       G ++         TV V I G+      +  K+ A++
Sbjct: 1778 RELQERCQQQAEGLEYRASRAGNLATVEVFIDGVQVGAAQNPQKKMAQK 1826



 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 8    TLEKRIGYAFANRSL-----LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
             L+  I Y      +     + +ALT +S   ++   YER E LGD  L  ++S  LF  
Sbjct: 1379 QLKNMINYPVQASKVSSQLKILEALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLK 1436

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
                 EG+L+     +VS     + A    L S+
Sbjct: 1437 HPQKHEGQLTRMRQQMVSNMVLYRYALSKGLQSY 1470



 Score = 42.6 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 158  KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMDCSKRA 210
            +  L +    +    P Y+     GP H  RFT  V ++            + M  S + 
Sbjct: 1862 RQTLNDICLRRNWPMPFYRCVSEGGPAHAKRFTFAVRVNTTDKGWTDECVGEAM-PSVKK 1920

Query: 211  AEQVAAAEVLKREG 224
            A+  AA  +L+   
Sbjct: 1921 AKDSAAVLLLELIN 1934


>gi|255550219|ref|XP_002516160.1| Ribonuclease III, putative [Ricinus communis]
 gi|223544646|gb|EEF46162.1| Ribonuclease III, putative [Ricinus communis]
          Length = 1660

 Score = 91.1 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 93/244 (38%), Gaps = 27/244 (11%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLF 60
                   +E ++GY F+ + LL++A+TH+S+        Y+RLEFLGD +L LLI+  L+
Sbjct: 1258 KEDEIKGIESKLGYTFSVKFLLQEAMTHASMQEQGIGYCYQRLEFLGDSVLDLLITWHLY 1317

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111
             +  S   GEL+   ++ VS E  +QV    DL   ++  S L                 
Sbjct: 1318 QNHTSMDPGELTDLRSACVSNENFAQVVVRRDLYKHLQHCSTLLLSQIKEYLESFHESDE 1377

Query: 112  ---------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                          D++ES+  A+ +D  + +   +         L + +          
Sbjct: 1378 VAKATGPKGPKALGDLLESIAGAMLIDAKLNLDEVWRIFMPLLSPLATPQNLELPPL--- 1434

Query: 163  EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEV 219
                                 +++      + +     L    G D S++AA+  AA  +
Sbjct: 1435 --RELMQLCNSLGYFIKEKCINNNDIVHAELRLQLNDVLLVGNGCDRSRKAAKGKAATHL 1492

Query: 220  LKRE 223
            LK+ 
Sbjct: 1493 LKKL 1496



 Score = 41.8 bits (96), Expect = 0.067,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 53/181 (29%), Gaps = 19/181 (10%)

Query: 16   AFANRSLLE-KALTHS-SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
             F   SLL  +A+T   S       S ERLE LGD +L   +S  LF  + +  EG+LS 
Sbjct: 1062 NFHIPSLLILEAITTPRSCEKV---SMERLELLGDSVLKYSVSCDLFLRYPTKHEGQLSA 1118

Query: 74   RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL------- 126
            +    V   T      +L +   ++        +  +  +        +           
Sbjct: 1119 QRTRAVCNST----LHQLGIGCKLQGYIRDSAFIPRYWVAPGQQPAFYVSCTCGVDTLEV 1174

Query: 127  ---YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
                     +          K       K   D    +    +   G+     V    G 
Sbjct: 1175 PLDAKFQTEDPKVQIAICCSKGHRWMCSKTISDCVEAVIGAYYVSGGLMAALHVMQWLGM 1234

Query: 184  D 184
            D
Sbjct: 1235 D 1235


>gi|159126799|gb|EDP51915.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus A1163]
          Length = 1546

 Score = 91.1 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 85/235 (36%), Gaps = 23/235 (9%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
            +E+ +GY F    LL  A+TH S+  ++      Y+RLEFLGD +L ++    LF  F  
Sbjct: 1277 VEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPD 1336

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT------------S 113
                 LS    ++VS +    ++ +L     I   S+  +   +               +
Sbjct: 1337 RDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQGA 1396

Query: 114  IQADVVESLIAALYLDGGIEV-----AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
               D+VE+ + A+++D   +            K + +       F     T         
Sbjct: 1397 CLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSIYDTFANKHPTTFLHNKLTN 1456

Query: 169  FGVTPEYKVTFRSGP--DHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  Y +     P  D  P      V + G   ++    S R A+  A+ + L
Sbjct: 1457 EYGCTNYCLKAGELPTIDGAPATVLAAVIVHGNVISEARSSSSRYAKIKASEKAL 1511



 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 12/98 (12%)

Query: 20   RSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
                 +A T        H            ++YERLEFLGD  L +  S  LF+   +  
Sbjct: 1078 PDFALEAFTKDSDNTEEHRGQQIHFQRGMGKNYERLEFLGDCFLKMATSIALFSQNPNDD 1137

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
            E +  V    L+  +     A +  +  +IR     R 
Sbjct: 1138 EFDYHVNRMCLICNKNLFNTAIKKQIYRYIRSRGFSRH 1175


>gi|212550552|ref|YP_002308869.1| ribonuclease III [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|229564347|sp|B6YQI6|RNC_AZOPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|212548790|dbj|BAG83458.1| ribonuclease III [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 261

 Score = 91.1 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
               Y  L + +G+   N S+ EKAL H S S   +     + ERLEFLGD I   +I+ 
Sbjct: 16  KKESYFALYRMLGFPPKNFSIYEKALLHKSSSKRDENGCYQNNERLEFLGDAIFNAIIAV 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +L+  F +  EG L+   + +V  +T  ++A +L +   I     +          I  +
Sbjct: 76  ILYKKFPTNDEGFLTNTRSKIVKRDTLDKIAYQLGINHLI-----MISAKVKNHKHIMGN 130

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPE 174
            +E+ I A+YLD G      FV+K      +          + K++L EW      +   
Sbjct: 131 TLEAFIGAIYLDKGYLKTKEFVEKRIINPYIDIDTLVREEVNFKSKLFEWCQKHKILLQF 190

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +   +  + +  F +   ++      G+  SKR ++Q A+    ++ 
Sbjct: 191 QTLENFTDNNRNVVFQIQALLNNHIAGIGIGYSKRESQQHASQMTWRKI 239


>gi|254822109|ref|ZP_05227110.1| ribonuclease III [Mycobacterium intracellulare ATCC 13950]
          Length = 235

 Score = 91.1 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 100/208 (48%), Gaps = 9/208 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
             L   +G    +  LL  ALTH S ++ +    + ERLEFLGD +LGL I+  L++   
Sbjct: 5   QALLDALGVELPD-ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDELYHRHP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---KDVCSFMTSIQADVVES 121
              EG+L+    S+V+ +  + V R+L            R       +  +SI AD +ES
Sbjct: 64  DRSEGDLAKLRASVVNTQALADVGRKLCEGGLGVHLLLGRGEANTGGADKSSILADGMES 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A+YL+ GI+VA   + + +      +       D KT LQE   A+    P Y VT 
Sbjct: 124 LLGAIYLEHGIDVAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARSMGAPSYVVTS 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            +GPDHD  FT VV ++      G+  S
Sbjct: 184 -TGPDHDKEFTAVVVVADTEYGSGVGRS 210


>gi|147833654|emb|CAN77284.1| hypothetical protein VITISV_043738 [Vitis vinifera]
          Length = 1296

 Score = 91.1 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 92/243 (37%), Gaps = 25/243 (10%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +  S LE  + Y+F + SLL ++LTH S         Y+RLEFLGD +L  L++  L++ 
Sbjct: 1049 VNVSYLESILNYSFRDPSLLVESLTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHK 1108

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-------------- 108
            +     G L+   ++ V+ +  +Q A +  L   I  SS                     
Sbjct: 1109 YPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGBFDKLPXES 1168

Query: 109  -------SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
                   S    +  DV+ESL  A+ +D        F         L + +  +      
Sbjct: 1169 TFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARE 1228

Query: 162  QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                  K     +  V  ++G       T+ VE +G          KR A ++A+ EVLK
Sbjct: 1229 LXELCQKEHYXIKRVVVSQNGKA---SVTIEVEANGAKHKHTSTSDKRTAXKLASKEVLK 1285

Query: 222  REG 224
               
Sbjct: 1286 SLK 1288


>gi|228472309|ref|ZP_04057075.1| ribonuclease 3 [Capnocytophaga gingivalis ATCC 33624]
 gi|228276512|gb|EEK15236.1| ribonuclease 3 [Capnocytophaga gingivalis ATCC 33624]
          Length = 232

 Score = 91.1 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 78/213 (36%), Gaps = 5/213 (2%)

Query: 10  EKRIGYAFANRSLLEKALTH---SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           E+ +G+        E+A T     + S     SYERLEFLGD ILG +I+  +F      
Sbjct: 2   EQLLGFPPKEIHYYEEAFTLGTVRTDSAQPHISYERLEFLGDAILGAVIAHFVFLQAPDK 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+     +V  E  +Q+  +L L  ++  +        +   ++   +V ++    
Sbjct: 62  NEGDLTKMRTRMVRRENLNQIGEDLRLREYLL-ADKHTLLSGNIAGNLLEALVGAIYLDR 120

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
                 E     +            K     K+ + EWA               +     
Sbjct: 121 GYSKATEFIHRILIDTNLSMRDLENKVI-SYKSLMVEWAQKYHKTIAFVSEEDPTYKGRT 179

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             F   V I+    A+  D SK+ AE+ AA   
Sbjct: 180 KYFQAKVMINDKVFAKAHDTSKKKAEERAAKRA 212


>gi|240013570|ref|ZP_04720483.1| ribonuclease III [Neisseria gonorrhoeae DGI18]
 gi|240112363|ref|ZP_04726853.1| ribonuclease III [Neisseria gonorrhoeae MS11]
 gi|240120639|ref|ZP_04733601.1| ribonuclease III [Neisseria gonorrhoeae PID24-1]
 gi|260441082|ref|ZP_05794898.1| ribonuclease III [Neisseria gonorrhoeae DGI2]
          Length = 239

 Score = 91.1 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 12  TAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 69  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   + +R  +       +D KT LQE   A+    P+Y++  + G  
Sbjct: 129 SFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 188

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
            D  F +  ++  L    +    S+
Sbjct: 189 DDSMFVISCDLGELGFVCRAKGTSR 213


>gi|330983107|gb|EGH81210.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 132

 Score = 91.1 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/132 (40%), Positives = 75/132 (56%), Gaps = 3/132 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF 
Sbjct: 1   MSVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFE 57

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
               A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+
Sbjct: 58  RSPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEA 117

Query: 122 LIAALYLDGGIE 133
           LI A+YLD G+E
Sbjct: 118 LIGAIYLDAGME 129


>gi|316974223|gb|EFV57735.1| putative ribosomal protein S7e [Trichinella spiralis]
          Length = 2029

 Score = 90.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 78/244 (31%), Gaps = 42/244 (17%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFN 61
              ++ E +IGY F N++ L +ALTHSS +       +SYERLEFLGD IL  LIS  L++
Sbjct: 1766 DLNSFEAKIGYRFTNKAYLIQALTHSSYNEVETPVTDSYERLEFLGDAILDYLISRHLYS 1825

Query: 62   HFDSAKEGELSVRFNSLVSAE--------------------------TCSQVARELDLAS 95
                   G LS    +LV+                                    ++   
Sbjct: 1826 SKRIRSPGLLSDLRAALVNNYFLYFNAELLSVNERFVLAMRGLKESVNFHNELYMMEEEQ 1885

Query: 96   FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK----------Q 145
                           +     D+ ES+  A++LD    +A  +   Y             
Sbjct: 1886 DDDEKETSEFAEHVEVPKPLGDIFESVAGAIFLDSHCSLATVWQVYYNMIAEEIGKQRSD 1945

Query: 146  RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
                +        + ++     +        +    G        V V ++G     G  
Sbjct: 1946 FTSFNKCLCHPPISPVRHLLELEPERVQFNILDREEGNSG---VHVQVVVTGKGSFIGSG 2002

Query: 206  CSKR 209
             S R
Sbjct: 2003 KSYR 2006


>gi|240016009|ref|ZP_04722549.1| ribonuclease III [Neisseria gonorrhoeae FA6140]
 gi|240115103|ref|ZP_04729165.1| ribonuclease III [Neisseria gonorrhoeae PID18]
          Length = 239

 Score = 90.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 12  TAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 69  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAAV 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   + +R  +       +D KT LQE   A+    P+Y++  + G  
Sbjct: 129 SFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 188

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
           +D  F +  ++  L    +    S+
Sbjct: 189 NDSMFVISCDLGELGFVCRAKGTSR 213


>gi|89889945|ref|ZP_01201456.1| ribonuclease III (Rnase III), double-stranded RNA binding motif
           [Flavobacteria bacterium BBFL7]
 gi|89518218|gb|EAS20874.1| ribonuclease III (Rnase III), double-stranded RNA binding motif
           [Flavobacteria bacterium BBFL7]
          Length = 246

 Score = 90.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 75/202 (37%), Gaps = 6/202 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           ++K  G    N  +  KA TH S+S         SYERLEFLGD ILG +I+  ++N   
Sbjct: 23  IKKITGITPKNIDIYRKAFTHKSMSLKDADGNPISYERLEFLGDAILGSVIAEYIYNEVP 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+   + +VS E  +++  +  L  F +     R    +   ++   +V ++  
Sbjct: 83  HGDEGYLTKMRSKIVSREHLNELGLDFGLIDFAKTQVPERNFGANVHGNLFEALVGAIYL 142

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
                         V + +       GK        ++         T  Y     +G +
Sbjct: 143 DKGYKRTQNFISRRVIEPYVDIEKLEGKVISYKSILIEWCQKN--KKTFNYHTYEDTGVN 200

Query: 185 HDPRFTVVVEISGLAPAQGMDC 206
               F+V + I     A+    
Sbjct: 201 EIRHFSVKLSIDDRVLAKARAT 222


>gi|15828634|ref|NP_325994.1| ribonuclease III (RNase III) [Mycoplasma pulmonis UAB CTIP]
 gi|14089576|emb|CAC13336.1| RIBONUCLEASE III (RNASE III) [Mycoplasma pulmonis]
          Length = 241

 Score = 90.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 7/209 (3%)

Query: 18  ANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSA--KEGELSVR 74
             +++  +A TH++  + Y+ +SYE LEFLGD IL   +S  +F + +S     G  ++ 
Sbjct: 35  KEKNIFFQAFTHTTFHNLYKAKSYEMLEFLGDAILQKNVSEYIFKNTESNKINPGTATLI 94

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
            + LV+    S +A+EL L  F+ +     + V +    + +D+ ESL AA+Y+  G +V
Sbjct: 95  RSKLVNKTCLSNLAKELKLDKFLLLPKGQEELVKNE--KVLSDLFESLCAAIYITKGNDV 152

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
              F+ KY   +                +        +    V      +    +   + 
Sbjct: 153 LEVFLQKYLYPKMQDLEYKTLKNAKGRFQEIFQATTKSAGKYVISFD--EEKKIYEAKLI 210

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            S      G   +K+ AEQ AA + LK+ 
Sbjct: 211 HSETIYGIGYGKNKKEAEQNAAEDALKKL 239


>gi|238750386|ref|ZP_04611887.1| Ribonuclease 3 [Yersinia rohdei ATCC 43380]
 gi|238711317|gb|EEQ03534.1| Ribonuclease 3 [Yersinia rohdei ATCC 43380]
          Length = 204

 Score = 90.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/190 (34%), Positives = 95/190 (50%), Gaps = 6/190 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
            +ALTH S S    +  ERLEFLGD IL  +I+  L+  F    EG++S    +LV   T
Sbjct: 2   LQALTHRSASS---KHNERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNT 58

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I      +  ++
Sbjct: 59  LAEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHTIERLILDWY 118

Query: 144 KQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200
           + R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P
Sbjct: 119 RSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEP 178

Query: 201 AQGMDCSKRA 210
             G   S+R 
Sbjct: 179 VVGAGSSRRK 188


>gi|115292171|emb|CAK32533.1| putative dicer-like protein [Mucor circinelloides]
          Length = 1529

 Score = 90.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 53/98 (54%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
             +    + + +GY F N +L+ +ALTH+S+++S    Y+RLEFLGD +L   ++  LF  
Sbjct: 1248 RIDIKKVSRILGYEFQNEALIAEALTHASVTNSSVPCYQRLEFLGDAVLDFCVTNYLFEK 1307

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            + +A  G L     S V+ +  S +  +L L   IR  
Sbjct: 1308 YHTAPPGTLHDLRKSSVNNDILSVLCIQLGLHVHIRHF 1345



 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 9/107 (8%)

Query: 1    MSALRYSTL----EKRIGY--AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54
            M  +    L    +K +G      +  +L +A T SS     ++ Y+RLEFLGD +L  +
Sbjct: 1037 MMHIDAVLLMHDAKKALGLSGRMKDPYML-EAFTASSA--GLEKDYQRLEFLGDSVLKFI 1093

Query: 55   ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
             ST +F     + E EL+     ++S     + A +L L  +I   +
Sbjct: 1094 TSTYVFVTLPISNEFELTESRMRMISNTALFKSAIQLRLYEYICSQN 1140


>gi|47225092|emb|CAF98719.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 290

 Score = 90.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 8/195 (4%)

Query: 37  QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
               +R+EFLGD I+ L+ +  LF HF    EG L++  +SLV+  T ++VA EL +  F
Sbjct: 57  SGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF 116

Query: 97  IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFR 154
              +   ++ V        AD++ES IAALY+D  +E   TF++  +  R       +  
Sbjct: 117 AITNDKTKRPVVLRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDW 175

Query: 155 RDAKTELQEWA-----HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            D K++LQ+         K    P YK     GP H   +TV V   G     G   S +
Sbjct: 176 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGDRIGCGKGPSIQ 235

Query: 210 AAEQVAAAEVLKREG 224
            AE  AA + L++  
Sbjct: 236 QAEMGAAMDALEKYN 250


>gi|268594306|ref|ZP_06128473.1| ribonuclease III [Neisseria gonorrhoeae 35/02]
 gi|268596300|ref|ZP_06130467.1| ribonuclease III [Neisseria gonorrhoeae FA19]
 gi|268603082|ref|ZP_06137249.1| ribonuclease III [Neisseria gonorrhoeae PID1]
 gi|268681562|ref|ZP_06148424.1| ribonuclease III [Neisseria gonorrhoeae PID332]
 gi|268683791|ref|ZP_06150653.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679]
 gi|268686031|ref|ZP_06152893.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035]
 gi|268547695|gb|EEZ43113.1| ribonuclease III [Neisseria gonorrhoeae 35/02]
 gi|268550088|gb|EEZ45107.1| ribonuclease III [Neisseria gonorrhoeae FA19]
 gi|268587213|gb|EEZ51889.1| ribonuclease III [Neisseria gonorrhoeae PID1]
 gi|268621846|gb|EEZ54246.1| ribonuclease III [Neisseria gonorrhoeae PID332]
 gi|268624075|gb|EEZ56475.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679]
 gi|268626315|gb|EEZ58715.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035]
 gi|317163728|gb|ADV07269.1| ribonuclease III [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 267

 Score = 90.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 40  TAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 96

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 97  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 156

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   + +R  +       +D KT LQE   A+    P+Y++  + G  
Sbjct: 157 SFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 216

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
           +D  F +  ++  L    +    S+
Sbjct: 217 NDSMFVISCDLGELGFVCRAKGTSR 241


>gi|294660491|ref|NP_853275.2| ribonuclease 3 [Mycoplasma gallisepticum str. R(low)]
 gi|284812153|gb|AAP56843.2| Ribonuclease 3 (Ribonuclease III) [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930761|gb|ADC30700.1| Ribonuclease 3 (Ribonuclease III) [Mycoplasma gallisepticum str.
           R(high)]
 gi|284931334|gb|ADC31272.1| Ribonuclease 3 (Ribonuclease III) [Mycoplasma gallisepticum str. F]
          Length = 655

 Score = 90.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLL 59
            A     L K+      N  L E+ALTH+S ++    + +Y+RLEFLGD I+  +++  L
Sbjct: 428 EAKDLELLLKKFKVVTNNIGLYEEALTHNSYANEMHLKYNYQRLEFLGDAIINKIVAEYL 487

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           FNH DS++      R   + S  T  + A +L+L ++IRV   L+  +      I  D+ 
Sbjct: 488 FNHSDSSEGEMTKDRIKIIQSN-TLIKAATQLELINYIRVGEGLK--IAPLSPKILEDIF 544

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+ I A+YLD G E A   +         + G+   +   +                   
Sbjct: 545 EAFIGAMYLDQG-EYAVRKILNDTIIGYYQKGQLTENTDYKSIFQEIIHSTGLNMKIHYE 603

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           R+        TV +   G+   +G D S   AE  AA E + +
Sbjct: 604 RTYDRQKNLHTVSLYAGGIMYGEGKDSSTHKAEIKAAKEAISK 646


>gi|213405195|ref|XP_002173369.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces
           japonicus yFS275]
 gi|212001416|gb|EEB07076.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces
           japonicus yFS275]
          Length = 325

 Score = 90.0 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 16/218 (7%)

Query: 17  FANRSLLEKALTHSSISHSY-----------QESYERLEFLGDRILGLLISTLLFNHFDS 65
              + L E+  TH S ++              +  ERLEFLGD +L  +++ +++  F +
Sbjct: 102 IRQKKLEEQVFTHKSRANELFPHCLDARKLLSKHNERLEFLGDDVLEGIVTKIIYERFPN 161

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EGELS    +LV  +  S+ A    L   +++     K      T + ADV E+ + A
Sbjct: 162 ANEGELSKLRATLVGNDMVSKFATLYGLHEKLQLGLCGEKSQLRKCTKVVADVFEAYLGA 221

Query: 126 LYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           LYLD  I+ A  +V +  +    R        + AK ELQ       G      +  + G
Sbjct: 222 LYLDNQIDAAFEWVKQLIEPELVRFKMEPPINKLAKAELQRRIGKAGGKVEYRCIEKKMG 281

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                 + V   I+G   + G+  + + A   AA + L
Sbjct: 282 Q--REEYKVACIINGSEVSWGVGSNIKLAGTRAAMKAL 317


>gi|33862159|ref|NP_893720.1| putative ribonuclease III [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33634377|emb|CAE20062.1| putative ribonuclease III [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 249

 Score = 90.0 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 10/227 (4%)

Query: 3   ALRYSTLEKRIGYAFANRSLLE---KALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
            +      K I     ++ +L    +ALTHSS ++    +YE+LEF GD +L L  S  +
Sbjct: 21  EINSKRFIKIINE--KDKLILHTFNEALTHSSANNIV--NYEKLEFFGDAVLRLSASDFI 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              + S   G  S   + +VS E  +++ +++ +   I        D  S  T I     
Sbjct: 77  ERTYKSMSVGSRSELRSQIVSDEWLTELGKKIFIEKVIIKGPKAMGDENSKDTIIAETSE 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
             + A       I     ++D +WK+ A        + +AK+ LQEW  ++    P YK+
Sbjct: 137 ALIGAIYKCFNSINEVNIWLDNFWKKDAELYLQAPHKYNAKSALQEWCQSQGFDLPIYKI 196

Query: 178 TFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              S    DP RF+  + I+G   A     S + AE+ AA+ ++++ 
Sbjct: 197 YEVSKNHGDPKRFSCEIYINGSKKAFSFGHSHKKAEKNAASILIQKI 243


>gi|320580371|gb|EFW94594.1| ribonuclease III, putative [Pichia angusta DL-1]
          Length = 347

 Score = 89.6 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 83/223 (37%), Gaps = 16/223 (7%)

Query: 16  AFANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSA 66
              +  +  +  TH S   + +          + ERLEFLGD I+  L++ +LF  + S 
Sbjct: 28  KIEDPVIEARVFTHRSAVSNTKHLSKKEILESNNERLEFLGDSIINNLVTQILFERYPSF 87

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS+  + L+S  +  + + +      + V+             I +DV E+ +  L
Sbjct: 88  DEGELSILRSQLISNSSLGEFSEKYGFPEKLVVNFAKDAAFQKGKHKIYSDVFEAYVGGL 147

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK-------TELQEWAHAKFGVTPEYKVTF 179
           Y+D       T      +    +  K              + Q +A       P   +T 
Sbjct: 148 YVDSNYSNLDTIKKWLEQLITPRLSKLTERFNLKNLNNDAKAQLYALIGSAALPPRYITK 207

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           ++G   D  F V   I      +G   + + A   AA + L +
Sbjct: 208 QTGNGFDVSFIVQCMIGDEIIGEGEGSNLKQAGLRAAEDALSK 250


>gi|312601347|gb|ADQ90602.1| Ribonuclease III [Mycoplasma hyopneumoniae 168]
          Length = 227

 Score = 89.6 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 79/206 (38%), Gaps = 7/206 (3%)

Query: 17  FANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             ++ +  +ALTH S +  +  +  YE LEFLGD ++   +S  +        EG  +  
Sbjct: 18  PNSKQIYIQALTHKSYNFINPDKPHYEMLEFLGDSVINYAVS-KVIYDNFYKNEGNSTQI 76

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
            + L S  + +   +++ L +++ +              ++AD+ ES  AA+ LD G E 
Sbjct: 77  RSLLTSTSSLANATKKVGLMNYVLLGRGA--SEIRENNKLKADIFESFCAAILLDQGFEK 134

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
              F+ +Y  +      + +      + +     F  + +         D    F V + 
Sbjct: 135 LNEFLSEYLYKDVNFDTEKQYKDPKSIFQEKIQTFSTSNKIHYLHTKLADG--TFRVDLI 192

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVL 220
                   G   S + AE  AA   L
Sbjct: 193 WEKKKYGIGYGRSIKEAEFAAATNAL 218


>gi|255536416|ref|YP_003096787.1| Ribonuclease III [Flavobacteriaceae bacterium 3519-10]
 gi|255342612|gb|ACU08725.1| Ribonuclease III [Flavobacteriaceae bacterium 3519-10]
          Length = 254

 Score = 89.6 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 7/215 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           + + K  G +  N +L  +A +  + S  +  ++YERLEFLGD +LG +IS  LF+ +  
Sbjct: 27  NEISKITGCSVQNINLYREAFSLKTASPRTQVKNYERLEFLGDSVLGAIISCHLFSTYPH 86

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EG L+   + +V+ +  +++  EL L  F++  S               +++E+LI A
Sbjct: 87  ANEGYLTQMKSKIVNRKNLNKLGDELGLTGFLQNESPSTLSEN-----TSGNLLEALIGA 141

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LYLD   E     V +     +  +    +    +      ++         T +     
Sbjct: 142 LYLDVDYETCKKVVLERLLTPSEINKLENKIVSYKSLLLEWSQKKKEHIRYDTEQEMQAG 201

Query: 186 -DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            +  F  V+ I+    A   + SK+ AE+ AA   
Sbjct: 202 KNVVFRSVIWINDRKVANATETSKKKAEEKAAQRA 236


>gi|281427125|ref|NP_001163918.1| dicer 1, ribonuclease type III [Xenopus laevis]
 gi|261826170|gb|ACX94846.1| truncated double-stranded RNA-specific endoribonuclease type III
            [Xenopus laevis]
          Length = 1795

 Score = 89.6 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1625 FENFEKKINYQFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1684

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                G L+   ++LV+    + +A + D   + +
Sbjct: 1685 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 1718



 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE  GD  L   I+T LF  +  + EG LS   +  
Sbjct: 1270 NPGLILQALTLSNASDGF--NLERLEMPGDSFLKHAITTYLFCTYPDSHEGRLSYMRSKK 1327

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1328 VSNCNLYRLGKKKG 1341


>gi|108798917|ref|YP_639114.1| ribonuclease III [Mycobacterium sp. MCS]
 gi|119868032|ref|YP_937984.1| ribonuclease III [Mycobacterium sp. KMS]
 gi|126434517|ref|YP_001070208.1| ribonuclease III [Mycobacterium sp. JLS]
 gi|108769336|gb|ABG08058.1| RNAse III [Mycobacterium sp. MCS]
 gi|119694121|gb|ABL91194.1| RNAse III [Mycobacterium sp. KMS]
 gi|126234317|gb|ABN97717.1| RNAse III [Mycobacterium sp. JLS]
          Length = 234

 Score = 89.6 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 65/213 (30%), Positives = 98/213 (46%), Gaps = 9/213 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
             L  S L   +G    +  LL  ALTH S S+ +    + ERLEFLGD +LGL I+  L
Sbjct: 1   MTLDRSPLLAALGVTLPD-DLLTIALTHRSYSYEHGGLPTNERLEFLGDSVLGLTITEEL 59

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQA 116
           F+      EG+L+    S+V+    + V R+L    L S++ +         +  +SI A
Sbjct: 60  FHRHPDRSEGDLAKLRASIVNTGALADVGRKLSDDGLGSYLLLGKGEESSGGADKSSILA 119

Query: 117 DVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           D VESL+ A+Y+     +                 +     D K+ LQE   A+    P 
Sbjct: 120 DGVESLLGAIYVQHGLTVTREVILRLFAGLLDTAPTLGAGLDWKSSLQELTAARGLGAPH 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           Y VT  +GPDHD  FT  V ++ +   +G+  +
Sbjct: 180 YVVTS-TGPDHDKEFTATVLVTDIEYGRGVGRT 211


>gi|86143647|ref|ZP_01062023.1| putative ribonuclease III [Leeuwenhoekiella blandensis MED217]
 gi|85829690|gb|EAQ48152.1| putative ribonuclease III [Leeuwenhoekiella blandensis MED217]
          Length = 248

 Score = 89.6 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61
           + T++K IG+   N +  E+A TH S++         +YERLEFLGD +LG +I+  LF+
Sbjct: 19  FVTVKKIIGFKPINITHYEEAFTHRSMALQDKKGNAFNYERLEFLGDAMLGAVIAAYLFD 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EG L+   + +VS E  +++ R+L L   ++ +        +   ++   +V +
Sbjct: 79  EVGKGDEGYLTKMRSKVVSREHLNELGRDLGLLGLVKSAIPKENFGANIHGNLFEALVGA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +          +     V   +       G+        ++     K     ++     S
Sbjct: 139 IYQDRGYRYARKFINKRVIDPYVDIEKLEGRVISYKSLLIEWCQKEKR--LFDFDTYEDS 196

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCS 207
           G D    F+V + I G   A+    S
Sbjct: 197 GQDVVRHFSVRLSIDGKQVAKARATS 222


>gi|156838880|ref|XP_001643138.1| hypothetical protein Kpol_455p11 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113733|gb|EDO15280.1| hypothetical protein Kpol_455p11 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 558

 Score = 89.6 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 82/219 (37%), Gaps = 15/219 (6%)

Query: 19  NRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           + +L   A  H S  +             S ERLEFLGD  LG L+S +++  F SA EG
Sbjct: 113 DENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEG 172

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT-SIQADVVESLIAALYL 128
            LS    S+V+       + +L+    ++ +      V         AD VE+ I AL +
Sbjct: 173 MLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPTRVVKDKMSKRYADCVEAYIGALVI 232

Query: 129 DGGI----EVAGTFVDKYWKQRALKSGKFRRDA-KTELQEWAHAKFGVTPEYKVTFRSGP 183
           D       ++     +   K+ A  S    ++      +        +            
Sbjct: 233 DRFGTEFLDIKEWLEELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKL 292

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              P F V V+I  +   +    S R AE  AA +VL+ 
Sbjct: 293 TEMPPFRVEVKIGDILLDEAEGNSIREAEHRAAMKVLEN 331



 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 189 FTVVVEISG--LAPAQGMDCSKRAAEQVAAAEVLK 221
           FT    I G  +  A G   SK+ A+Q AA+  L+
Sbjct: 510 FTANCIIKGSGIFLASGRGRSKKIAQQNAASAALR 544


>gi|146324173|ref|XP_753471.2| RNA helicase/RNAse III [Aspergillus fumigatus Af293]
 gi|129558032|gb|EAL91433.2| RNA helicase/RNAse III, putative [Aspergillus fumigatus Af293]
          Length = 1546

 Score = 89.6 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 85/235 (36%), Gaps = 23/235 (9%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
            +E+ +GY F    LL  A+TH S+  ++      Y+RLEFLGD +L ++    LF  F  
Sbjct: 1277 VEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPD 1336

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT------------S 113
                 LS    ++VS +    ++ +L     I   S+  +   +               +
Sbjct: 1337 RDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQGA 1396

Query: 114  IQADVVESLIAALYLDGGIEV-----AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
               D+VE+ + A+++D   +            K + +       F     T         
Sbjct: 1397 CLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSIYDTFANKHPTTFLHNKLTN 1456

Query: 169  FGVTPEYKVTFRSGP--DHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  Y +     P  D  P      V + G   ++    S R A+  A+ + L
Sbjct: 1457 EYGCTNYCLKAGELPTIDGAPATVLAAVIVHGNVISEARSSSSRYAKITASEKAL 1511



 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 12/98 (12%)

Query: 20   RSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
                 +A T        H            ++YERLEFLGD  L +  S  LF+   +  
Sbjct: 1078 PDFALEAFTKDSDNTEEHRGQQIHFQRGMGKNYERLEFLGDCFLKMATSIALFSQNPNDD 1137

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
            E +  V    L+  +     A +  +  +IR     R 
Sbjct: 1138 EFDYHVNRMCLICNKNLFNTAIKKQIYRYIRSRGFSRH 1175


>gi|307133775|ref|NP_001182502.1| endoribonuclease Dicer isoform 2 [Homo sapiens]
 gi|300517087|gb|ADK25182.1| t-Dicer [Homo sapiens]
          Length = 1829

 Score = 89.6 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                G L+   ++LV+    + +A + D   + +
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 1759



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
            G LS   +  VS     ++ ++  L                            +      
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1393

Query: 129  DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                E      D       L       D + E   W   K     E         +H   
Sbjct: 1394 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1451

Query: 189  FTVVVEISGLAPAQG 203
                  I  +    G
Sbjct: 1452 -----FIDNMLMGSG 1461


>gi|114654621|ref|XP_001154071.1| PREDICTED: dicer1 isoform 2 [Pan troglodytes]
          Length = 1868

 Score = 89.6 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                G L+   ++LV+    + +A + D   + +
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 1759



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
            G LS   +  VS     ++ ++  L                            +      
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1393

Query: 129  DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                E      D       L       D + E   W   K     E         +H   
Sbjct: 1394 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1451

Query: 189  FTVVVEISGLAPAQG 203
                  I  +    G
Sbjct: 1452 -----FIDNMLMGSG 1461


>gi|254431519|ref|ZP_05045222.1| ribonuclease III [Cyanobium sp. PCC 7001]
 gi|197625972|gb|EDY38531.1| ribonuclease III [Cyanobium sp. PCC 7001]
          Length = 245

 Score = 89.6 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 76/212 (35%), Gaps = 14/212 (6%)

Query: 19  NRSLL---EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           + +LL   E+ALTH+S     + ++ERLEFLGD +L L  S  L  H      G  S   
Sbjct: 29  DPALLAPIEEALTHTSA--RQRGNHERLEFLGDAVLRLAASEYLHRHHPQLGVGSQSALR 86

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           + LVS    +++A    L +  R+             +     +   +         +  
Sbjct: 87  SQLVSDRWLAELADSCGLETVWRI--GPMARGDRAGIATVRAELCEALIGAVYRCWGDSL 144

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD------PRF 189
              +          S +   D      + A  ++       +   S  +         RF
Sbjct: 145 EPVLTWLTPHWQQASQELLADPDRHNWKSALQEWTQGQGLGLPSYSCEERSTLHADPRRF 204

Query: 190 TVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVL 220
           +  + +  G     G   S+RAAEQ AA + L
Sbjct: 205 SCRLTLGAGNESWDGWGPSRRAAEQDAARQAL 236


>gi|59800710|ref|YP_207422.1| ribonuclease III [Neisseria gonorrhoeae FA 1090]
 gi|75432565|sp|Q5F9X7|RNC_NEIG1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|59717605|gb|AAW89010.1| putative ribonuclease III [Neisseria gonorrhoeae FA 1090]
          Length = 239

 Score = 89.2 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 12  TAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 69  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAAV 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   + +R  +       +D KT LQE   A+    P+Y++  + G  
Sbjct: 129 SFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 188

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
            D  F +  ++  L    +    S+
Sbjct: 189 DDSMFVISCDLGELGFVCRAKGTSR 213


>gi|297836192|ref|XP_002885978.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297331818|gb|EFH62237.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score = 89.2 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 86/243 (35%), Gaps = 24/243 (9%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            +     +EK + Y+F N++LL +ALTH+S   S    ++RL F+G   + L  +  ++ 
Sbjct: 369 DSDPVKAVEKILNYSFTNKNLLREALTHNS---SNLLPFQRLMFVGKAGISLAFANHMYL 425

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD---- 117
            +      EL++  N+    +  ++VA +  +  F++ +    K        +       
Sbjct: 426 TYPKLGPKELTMLQNANTCNDRYARVAVKRGIYQFLKCNVRTSKRQIIEFIKMLGKEDDP 485

Query: 118 ----------------VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
                              +    + ++  ++     +   ++         R+      
Sbjct: 486 DPFRSVKAPKILTDLVESVAGAVYIDVNRDVKRLWEILRGLFEPIYTLDDIRRKPHPLLT 545

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTV-VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                 K G   E++             T+  V +     A G  C++ A++  AA   L
Sbjct: 546 LFCLGYKHGKRIEFRYRECEKSSGMNEATITEVYVDDKFIACGKSCNRAASKMRAATMAL 605

Query: 221 KRE 223
           ++ 
Sbjct: 606 EKL 608



 Score = 74.6 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 96/269 (35%), Gaps = 47/269 (17%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTL 58
           M ++    +EK + Y F +++LL++A+T +S S++   S  +ERLEFLGD +L ++ S  
Sbjct: 1   MESV--EAVEKILNYTFTDKNLLKEAITKTSGSNTESSSLLFERLEFLGDSVLLVVFSNH 58

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS------------------ 100
           +   + +    +L+    + VS ET ++VA   +L  FI                     
Sbjct: 59  IEITYPNLHPNDLNDVRIANVSNETFARVAVNNNLHQFIIFDAPNPLLHKMSHVLTNKWC 118

Query: 101 ----------------SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                                          AD+VE++  A+Y+D   +V   +      
Sbjct: 119 HVLKIKDFSEAVKEEVYPAPCGGLVKAPKFLADLVEAIAGAVYIDVDFDVQRVWEIFRVL 178

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS---GPDHDPRFTVVV-----EIS 196
              + +    R                  +    F     GP  + +F   V      + 
Sbjct: 179 VEPICTLDDLRKQPERTYLRLLGLGDKLGKRIEVFFEEEGGPKIEQKFVCSVNIEIPSVE 238

Query: 197 GLAPAQGMDCS-KRAAEQVAAAEVLKREG 224
            +   +G   S K  A+  +A  ++    
Sbjct: 239 SIFHMKGDAKSTKTQAQNSSAYYMIGALK 267


>gi|328696734|ref|XP_003240110.1| PREDICTED: endoribonuclease dcr-1-like isoform 3 [Acyrthosiphon
            pisum]
          Length = 1630

 Score = 89.2 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 59/112 (52%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            Y  LE+RIGY+F ++ LL +ALTH +    + E Y+RLEFLGD IL  LI+T +  H   
Sbjct: 1373 YELLERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYH 1432

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
               GE++   +SLV+  T + ++  + L  FI   S    +        Q  
Sbjct: 1433 KTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQK 1484


>gi|224101241|ref|XP_002312197.1| dicer-like protein [Populus trichocarpa]
 gi|222852017|gb|EEE89564.1| dicer-like protein [Populus trichocarpa]
          Length = 1468

 Score = 89.2 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 81/242 (33%), Gaps = 21/242 (8%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    LE  + Y+F + SLL +ALTH S         Y+RLEFLGD +L  LI+  ++  
Sbjct: 1214 VNVRYLESLLNYSFNDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITLHMYKE 1273

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            +     G L+   ++ V+ +  +  A ++ L   I  +S               +     
Sbjct: 1274 YPGMSPGLLTDLRSASVNNDCYALSAVKVGLDRHILHASHDLHKHIVATVKKIQEFSLES 1333

Query: 123  IAALYLDGGIE-------------------VAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
                  +                            V +  +                ++E
Sbjct: 1334 TFGWESETAFPKVLGDVIESLAGAILVDSGYNKEVVFESIRPLLEPLITPETLRLQPVRE 1393

Query: 164  WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
                      +YK    S    +   T+ VE +GL          K  A+++A+ EVLK 
Sbjct: 1394 LNELCQRQHFDYKKPIVSRNGRNASVTIEVEANGLIFKHTATVADKTTAKKLASKEVLKA 1453

Query: 223  EG 224
              
Sbjct: 1454 LK 1455


>gi|157414210|ref|YP_001485076.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9215]
 gi|157388785|gb|ABV51490.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9215]
          Length = 249

 Score = 89.2 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 10/227 (4%)

Query: 3   ALRYSTLEKRIGYAFANRSL---LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
            ++ +   + I     + S+     +A  HSS       +YE+LEF GD +L L  S  +
Sbjct: 21  NIKSNRFSEII--RTQDISVMQDFNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASNFI 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              +     GE S     +VS E  +++  ++D+   I        D  S  T I     
Sbjct: 77  EKKYPQMSVGERSELRAQIVSDEWLTKLGEKIDIEKLIIKGPKALGDENSKNTIIGEATE 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKV 177
             + A       I+    ++D  W++ +       ++  +KT LQEW  +K    P YK+
Sbjct: 137 ALIGAVYKCFNSIQEVNLWLDDIWEKDSEIFLKAPYKFKSKTVLQEWCQSKGFDLPIYKI 196

Query: 178 TFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              S  + DP RF+  + I GL  +     S + AE  AA  ++++ 
Sbjct: 197 IEFSKKNGDPKRFSCDIHIEGLKESSAFGKSHKQAETNAARVLIEKL 243


>gi|158706522|sp|Q4WVE3|DCL1_ASPFU RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1537

 Score = 89.2 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 83/247 (33%), Gaps = 35/247 (14%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
            +E+ +GY F    LL  A+TH S+  ++      Y+RLEFLGD +L ++    LF  F  
Sbjct: 1256 VEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPD 1315

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---------------------- 103
                 LS    ++VS +    ++ +L     I   S+                       
Sbjct: 1316 RDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQGA 1375

Query: 104  --RKDVCSFMTSIQADVVESLIAALYLDGGIEV-----AGTFVDKYWKQRALKSGKFRRD 156
                 V         D+VE+ + A+++D   +            K + +       F   
Sbjct: 1376 VDYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSIYDTFANK 1435

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGP--DHDP-RFTVVVEISGLAPAQGMDCSKRAAEQ 213
              T               Y +     P  D  P      V + G   ++    S R A+ 
Sbjct: 1436 HPTTFLHNKLTNEYGCTNYCLKAGELPTIDGAPATVLAAVIVHGNVISEARSSSSRYAKI 1495

Query: 214  VAAAEVL 220
             A+ + L
Sbjct: 1496 TASEKAL 1502



 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 12/98 (12%)

Query: 20   RSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
                 +A T        H            ++YERLEFLGD  L +  S  LF+   +  
Sbjct: 1057 PDFALEAFTKDSDNTEEHRGQQIHFQRGMGKNYERLEFLGDCFLKMATSIALFSQNPNDD 1116

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
            E +  V    L+  +     A +  +  +IR     R 
Sbjct: 1117 EFDYHVNRMCLICNKNLFNTAIKKQIYRYIRSRGFSRH 1154


>gi|328696730|ref|XP_003240109.1| PREDICTED: endoribonuclease dcr-1-like isoform 2 [Acyrthosiphon
            pisum]
          Length = 1648

 Score = 89.2 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 59/112 (52%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            Y  LE+RIGY+F ++ LL +ALTH +    + E Y+RLEFLGD IL  LI+T +  H   
Sbjct: 1391 YELLERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYH 1450

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
               GE++   +SLV+  T + ++  + L  FI   S    +        Q  
Sbjct: 1451 KTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQK 1502


>gi|225024664|ref|ZP_03713856.1| hypothetical protein EIKCOROL_01546 [Eikenella corrodens ATCC
           23834]
 gi|224942553|gb|EEG23762.1| hypothetical protein EIKCOROL_01546 [Eikenella corrodens ATCC
           23834]
          Length = 257

 Score = 89.2 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 61/194 (31%), Positives = 99/194 (51%), Gaps = 5/194 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L++ +G++F N  L E+ALTH S S    ++ ER EF+GD IL   ++ +LF+ F   
Sbjct: 23  EELQRHLGHSFQNPRLFEQALTHRSYS---AQNNERFEFVGDAILDYSVAKMLFDAFPGY 79

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    +LV+ +  +++AR + +   + +     K       SI AD VE+L+AA+
Sbjct: 80  SEGELSRLRANLVNQDVLAEIARSMGVGDALYLGVGELKSGGFDRPSILADAVEALLAAI 139

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V + + +R          +D KT LQE   A+    P+Y++  +SG  
Sbjct: 140 SFDADFAAAEQTVRRLFARRIANIDLSNQGKDPKTLLQEALQARRLPLPKYRIEHQSGEG 199

Query: 185 HDPRFTVVVEISGL 198
            D RF +  ++  L
Sbjct: 200 CDARFDIACDLGEL 213


>gi|328696732|ref|XP_001945890.2| PREDICTED: endoribonuclease dcr-1-like isoform 1 [Acyrthosiphon
            pisum]
          Length = 1691

 Score = 89.2 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 59/112 (52%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            Y  LE+RIGY+F ++ LL +ALTH +    + E Y+RLEFLGD IL  LI+T +  H   
Sbjct: 1434 YELLERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYH 1493

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
               GE++   +SLV+  T + ++  + L  FI   S    +        Q  
Sbjct: 1494 KTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQK 1545


>gi|222625282|gb|EEE59414.1| hypothetical protein OsJ_11564 [Oryza sativa Japonica Group]
          Length = 1371

 Score = 88.8 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 33/249 (13%)

Query: 1    MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLIS 56
            M A   +   +LE  +GY F +  LL +ALTH S         Y+RLEFLGD IL  L +
Sbjct: 1118 MKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFT 1177

Query: 57   TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----- 111
               ++ +       L+   ++ V+    +  A +  L   I  SS       S+      
Sbjct: 1178 EYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSF 1237

Query: 112  -------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158
                           +  DV+ES+  A+YLD   +    +         L + +      
Sbjct: 1238 TGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDP 1297

Query: 159  TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAEQV 214
             +  +                ++  D        V+      +     +K    + A+++
Sbjct: 1298 VKGLQ---EFCDRRSFKITYEKNHVDGVSSVIARVKAGETTYS----ATKSGPCKLAKKL 1350

Query: 215  AAAEVLKRE 223
            A+  VLK  
Sbjct: 1351 ASKAVLKDL 1359


>gi|71893762|ref|YP_279208.1| ribonuclease III [Mycoplasma hyopneumoniae J]
 gi|72080732|ref|YP_287790.1| ribonuclease III [Mycoplasma hyopneumoniae 7448]
 gi|71851889|gb|AAZ44497.1| ribonuclease III [Mycoplasma hyopneumoniae J]
 gi|71913856|gb|AAZ53767.1| ribonuclease III [Mycoplasma hyopneumoniae 7448]
          Length = 227

 Score = 88.8 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 79/206 (38%), Gaps = 7/206 (3%)

Query: 17  FANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             ++ +  +ALTH S +  +  +  YE LEFLGD ++   +S  +        EG  +  
Sbjct: 18  PNSKQIYIQALTHKSYNFINPDKPHYEMLEFLGDSVINYAVS-KVIYDNFYKNEGNSTQI 76

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
            + L S  + +   +++ L +++ +              ++AD+ ES  AA+ LD G E 
Sbjct: 77  RSLLTSTSSLANATKKVGLMNYVLLGRGA--SEIRENNKLKADIFESFCAAILLDQGFEK 134

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
              F+ +Y  +      + +      + +     F  + +         D    F V + 
Sbjct: 135 LNEFLSEYLYKDVNFDTEKQYKDPKSIFQEKIQTFSTSNKIHYLHTKLVDG--TFRVDLI 192

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVL 220
                   G   S + AE  AA   L
Sbjct: 193 WEKKKYGIGYGRSIKEAEFAAATNAL 218


>gi|41469333|gb|AAS07189.1| putative ribonuclease III, 5'-partial (with alternative splicing)
            [Oryza sativa Japonica Group]
          Length = 1017

 Score = 88.8 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 85/249 (34%), Gaps = 29/249 (11%)

Query: 1    MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLIS 56
            M A   +   +LE  +GY F +  LL +ALTH S         Y+RLEFLGD IL  L +
Sbjct: 760  MKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFT 819

Query: 57   TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----- 111
               ++ +       L+   ++ V+    +  A +  L   I  SS       S+      
Sbjct: 820  EYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFG 879

Query: 112  ----------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
                              +  DV+ES+  A+YLD   +    +         L + +   
Sbjct: 880  QSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIE 939

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
                +  +                ++  D        V+       A      K  A+++
Sbjct: 940  PDPVKGLQ---EFCDRRSFKITYEKNHVDGVSSVIARVKAGETTYSATKSGPCKLVAKKL 996

Query: 215  AAAEVLKRE 223
            A+  VLK  
Sbjct: 997  ASKAVLKDL 1005


>gi|115453927|ref|NP_001050564.1| Os03g0583900 [Oryza sativa Japonica Group]
 gi|122246906|sp|Q10HL3|DCL2A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2a; AltName:
            Full=Dicer-like protein 2a; Short=OsDCL2a
 gi|50399921|gb|AAT76309.1| putative RNA helicase/RNAseIII protein, C-terminus truncated [Oryza
            sativa Japonica Group]
 gi|108709535|gb|ABF97330.1| Type III restriction enzyme, res subunit family protein, expressed
            [Oryza sativa Japonica Group]
 gi|113549035|dbj|BAF12478.1| Os03g0583900 [Oryza sativa Japonica Group]
 gi|215701504|dbj|BAG92928.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1410

 Score = 88.8 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 85/249 (34%), Gaps = 29/249 (11%)

Query: 1    MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLIS 56
            M A   +   +LE  +GY F +  LL +ALTH S         Y+RLEFLGD IL  L +
Sbjct: 1153 MKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFT 1212

Query: 57   TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----- 111
               ++ +       L+   ++ V+    +  A +  L   I  SS       S+      
Sbjct: 1213 EYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFG 1272

Query: 112  ----------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
                              +  DV+ES+  A+YLD   +    +         L + +   
Sbjct: 1273 QSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIE 1332

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
                +  +                ++  D        V+       A      K  A+++
Sbjct: 1333 PDPVKGLQ---EFCDRRSFKITYEKNHVDGVSSVIARVKAGETTYSATKSGPCKLVAKKL 1389

Query: 215  AAAEVLKRE 223
            A+  VLK  
Sbjct: 1390 ASKAVLKDL 1398


>gi|218193216|gb|EEC75643.1| hypothetical protein OsI_12390 [Oryza sativa Indica Group]
          Length = 1318

 Score = 88.8 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 85/249 (34%), Gaps = 29/249 (11%)

Query: 1    MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLIS 56
            M A   +   +LE  +GY F +  LL +ALTH S         Y+RLEFLGD IL  L +
Sbjct: 1061 MKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFT 1120

Query: 57   TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----- 111
               ++ +       L+   ++ V+    +  A +  L   I  SS       S+      
Sbjct: 1121 EYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFG 1180

Query: 112  ----------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
                              +  DV+ES+  A+YLD   +    +         L + +   
Sbjct: 1181 QSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIE 1240

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
                +  +                ++  D        V+       A      K  A+++
Sbjct: 1241 PDPVKGLQ---EFCDRRSFKITYEKNHVDGVSSVIARVKAGETTYSATKSGPCKLVAKKL 1297

Query: 215  AAAEVLKRE 223
            A+  VLK  
Sbjct: 1298 ASKAVLKDL 1306


>gi|312871483|ref|ZP_07731577.1| ribonuclease III [Lactobacillus iners LEAF 3008A-a]
 gi|311093003|gb|EFQ51353.1| ribonuclease III [Lactobacillus iners LEAF 3008A-a]
          Length = 189

 Score = 88.8 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 3/148 (2%)

Query: 1   MSALRYS-TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57
           M +  +   L+++    F N  LLE+ALTHSS S+ +Q  ++YE+LEFLGD +L L IS 
Sbjct: 1   MVSESFKNELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+ HF +  EGEL+   +++V  E  SQ A E   +  +++     K       ++  D
Sbjct: 61  YLYRHFPNMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLED 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQ 145
           V E+   AL+LD G+     F+      
Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYP 148


>gi|254493164|ref|ZP_05106335.1| ribonuclease III [Neisseria gonorrhoeae 1291]
 gi|268600776|ref|ZP_06134943.1| ribonuclease III [Neisseria gonorrhoeae PID18]
 gi|226512204|gb|EEH61549.1| ribonuclease III [Neisseria gonorrhoeae 1291]
 gi|268584907|gb|EEZ49583.1| ribonuclease III [Neisseria gonorrhoeae PID18]
          Length = 267

 Score = 88.8 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 40  TAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 96

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 97  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAAV 156

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   + +R  +       +D KT LQE   A+    P+Y++  + G  
Sbjct: 157 SFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 216

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
           +D  F +  ++  L    +    S+
Sbjct: 217 NDSMFVISCDLGELGFVCRAKGTSR 241


>gi|268598421|ref|ZP_06132588.1| ribonuclease III [Neisseria gonorrhoeae MS11]
 gi|291044414|ref|ZP_06570123.1| ribonuclease III [Neisseria gonorrhoeae DGI2]
 gi|268582552|gb|EEZ47228.1| ribonuclease III [Neisseria gonorrhoeae MS11]
 gi|291011308|gb|EFE03304.1| ribonuclease III [Neisseria gonorrhoeae DGI2]
          Length = 267

 Score = 88.8 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 40  TAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 96

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 97  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAV 156

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   + +R  +       +D KT LQE   A+    P+Y++  + G  
Sbjct: 157 SFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 216

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
            D  F +  ++  L    +    S+
Sbjct: 217 DDSMFVISCDLGELGFVCRAKGTSR 241


>gi|251764794|sp|Q69LX2|DCL2B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2b; AltName:
            Full=Dicer-like protein 2b; Short=OsDCL2b
          Length = 1377

 Score = 88.8 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 33/249 (13%)

Query: 1    MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLIS 56
            M A   +   +LE  +GY F +  LL +ALTH S         Y+RLEFLGD IL  L +
Sbjct: 1124 MKAEEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFT 1183

Query: 57   TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----- 111
               ++ +       L+   ++ V+    +  A +  L   I  SS       S+      
Sbjct: 1184 EYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSF 1243

Query: 112  -------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158
                           +  DV+ES+  A+YLD   +    +         L + +      
Sbjct: 1244 TGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDP 1303

Query: 159  TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAEQV 214
             +  +                ++  D        V+      +     +K    + A+++
Sbjct: 1304 VKGLQ---EFCDRRSFKITYEKNHVDGVSSVIARVKAGETTYS----ATKSGPCKLAKKL 1356

Query: 215  AAAEVLKRE 223
            A+  VLK  
Sbjct: 1357 ASKAVLKDL 1365


>gi|50726394|dbj|BAD34005.1| CAF protein-like [Oryza sativa Japonica Group]
 gi|51091635|dbj|BAD36404.1| CAF protein-like [Oryza sativa Japonica Group]
          Length = 1375

 Score = 88.8 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 33/249 (13%)

Query: 1    MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLIS 56
            M A   +   +LE  +GY F +  LL +ALTH S         Y+RLEFLGD IL  L +
Sbjct: 1122 MKAEEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFT 1181

Query: 57   TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----- 111
               ++ +       L+   ++ V+    +  A +  L   I  SS       S+      
Sbjct: 1182 EYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSF 1241

Query: 112  -------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158
                           +  DV+ES+  A+YLD   +    +         L + +      
Sbjct: 1242 TGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDP 1301

Query: 159  TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAEQV 214
             +  +                ++  D        V+      +     +K    + A+++
Sbjct: 1302 VKGLQ---EFCDRRSFKITYEKNHVDGVSSVIARVKAGETTYS----ATKSGPCKLAKKL 1354

Query: 215  AAAEVLKRE 223
            A+  VLK  
Sbjct: 1355 ASKAVLKDL 1363


>gi|78780081|ref|YP_398193.1| RNAse III [Prochlorococcus marinus str. MIT 9312]
 gi|78713580|gb|ABB50757.1| RNAse III [Prochlorococcus marinus str. MIT 9312]
          Length = 249

 Score = 88.4 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 3   ALRYSTLEKRIGYAFANRSLLE---KALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
            ++     + I     N S+++   +A  HSS       +YE+LEF GD +L L  S  +
Sbjct: 21  NIKSERFSEII--RKQNISVIQDFNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASNFI 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
             ++     GE S     +VS E  +++ R++D+   I        D  S  T I     
Sbjct: 77  EKNYPQMSVGERSELRAQIVSDEWLTKLGRKIDIEKLIIKGPKALGDQNSKNTIIGEATE 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKV 177
             + A       I+    ++D  W++ +       ++  +KT LQEW  +K    P YK+
Sbjct: 137 ALIGAVYKCFNSIQEVNLWLDDIWEEDSEIFLKAPYKFKSKTVLQEWCQSKGFDLPVYKI 196

Query: 178 TFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              S  + DP RF+  + + GL  +     S + AE  AA  ++++
Sbjct: 197 IEVSKKNGDPKRFSCDIFVEGLKESSAFGKSHKQAETNAAKVLIEK 242


>gi|123969345|ref|YP_001010203.1| putative ribonuclease III [Prochlorococcus marinus str. AS9601]
 gi|123199455|gb|ABM71096.1| putative ribonuclease III [Prochlorococcus marinus str. AS9601]
          Length = 249

 Score = 88.4 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 14/228 (6%)

Query: 3   ALRYSTLEKRIGYAFANRSL-----LEKALTHSSISHSYQESYERLEFLGDRILGLLIST 57
            ++     + I     N+ +       +A  HSS       +YE+LEF GD +L L  S 
Sbjct: 21  NIKSKRFSEII----RNQDISVIQDFNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASN 74

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            +   +     GE S     +VS E  +++  ++D+   I        D  S  T I   
Sbjct: 75  FIEKKYPQMSVGERSELRAQIVSDEWLTKLGEKIDIEKLIIKGPKAIGDENSKNTIICEA 134

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEY 175
               + A       I+    ++D  W++ +       ++  +KT LQEW  +K    P Y
Sbjct: 135 TEALIGAIYKCFSSIKEVNLWLDDIWEEDSEIFLKSPYKFKSKTVLQEWCQSKGFDLPVY 194

Query: 176 KVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           K+   S  + DP RF   + I GL  +     S + AE  AA  ++++
Sbjct: 195 KIIEVSKKNGDPERFYCNIFIEGLKESSAFGKSHKQAETNAARVLIEK 242


>gi|6715634|gb|AAF26461.1|AC007323_2 T25K16.4 [Arabidopsis thaliana]
          Length = 2024

 Score = 88.4 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 82/257 (31%), Gaps = 45/257 (17%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             ++ +  LE+ + Y F  + LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF 
Sbjct: 1643 KSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFF 1702

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
             + S   G L+    + V+ E  ++VA +  L  ++R  S   +   + +        +S
Sbjct: 1703 TYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQVNKIKKQSILFSKS 1762

Query: 122  LIAALYL----DGGIEVAGTFVDKYWKQRA------------------------------ 147
                           E       +  K                                 
Sbjct: 1763 FKCLTVWLLFVFQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1822

Query: 148  ------LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-----PRFTVVVEIS 196
                   K  +         +           E       G ++         TV V I 
Sbjct: 1823 KDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFID 1882

Query: 197  GLAPAQGMDCSKRAAEQ 213
            G+      +  K+ A++
Sbjct: 1883 GVQVGVAQNPQKKMAQK 1899



 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 1433 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1489

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1490 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1520



 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMD 205
             +   +  L +    K    P Y+     GP H  RFT  V ++            + M 
Sbjct: 1943 HQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPM- 2001

Query: 206  CSKRAAEQVAAAEVLKREG 224
             S + A+  AA  +L+   
Sbjct: 2002 PSVKKAKDSAAVLLLELLN 2020


>gi|297794783|ref|XP_002865276.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297311111|gb|EFH41535.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 892

 Score = 88.4 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 88/245 (35%), Gaps = 29/245 (11%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M +     +EK + Y+F N++LL + LTH     +    ++RL F+G+  L L  +  L+
Sbjct: 345 MDSDSVEAVEKILNYSFVNKNLLNELLTH-----NTSPLFQRLMFVGEPALSLAFTKHLY 399

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR--------------------VS 100
             +   +  +LS+  ++    +  ++VA +  +  FI                       
Sbjct: 400 LTYPKLEPKDLSLLRDANACNDRYARVAVKKGIYQFIISNVEKPERMILDFIDMMGKEDD 459

Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
            D           I A++V ++  A+Y+D    V   +         + +    R     
Sbjct: 460 PDPDPYRVVKAPKILANLVAAVAGAVYIDVNYNVQRLWEIFRGLFEPIYTLDDLRMQPKP 519

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA--AEQVAAAE 218
                        +      S  D   +    V +  +  A G   SKR   A+ +AA E
Sbjct: 520 PFLMLFRLADKHGKRIDFRYSKVDGSRKNIAQVYLDDMFIASGC--SKRIDTAKLLAAEE 577

Query: 219 VLKRE 223
            L++ 
Sbjct: 578 ALQKL 582



 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 8/93 (8%)

Query: 1  MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
          M ++    +EK + Y+F N++LL+ A+T  S        ++RLEF GD +L +  +  + 
Sbjct: 1  MDSV--EAVEKILNYSFTNKTLLKDAITQRS------TLFDRLEFFGDSVLEVAFTNYIR 52

Query: 61 NHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
          + + + K  EL     + VS E  ++VA  L +
Sbjct: 53 HTYPNLKVKELCDLRTANVSNEKFARVAEILQI 85



 Score = 44.1 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 6/117 (5%)

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
            +        +          +      K              D + +L E         
Sbjct: 203 KLFEICYTRKLQIQTGSSANPLTYEMTTKQMVVDKDSLHVEPTDGRGKLIEICTKNKWPR 262

Query: 173 PEYKVTFRSGPDHDPRFTVVVE-----ISGLAPAQGMDCSKRA-AEQVAAAEVLKRE 223
           P + V    GP ++ +F   V+     I G    +G   SK+  AE  +A  +++  
Sbjct: 263 PIFSVEEERGPKNEQKFVCSVKIEIPNIEGSFHMKGDAKSKKKQAENSSAYHMIRAL 319


>gi|167046020|gb|ABZ10541.1| dicer-like protein B [Trichoplax adhaerens]
          Length = 357

 Score = 88.4 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIST 57
           +A     LE  +GY+F +R LL  ALTH++ +H       E Y+RLEFLGD IL  ++  
Sbjct: 180 NAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAILQYIVVR 239

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
             ++  ++ K  +L     + +  E+ + +     +  +   +S 
Sbjct: 240 HCYHANNNYKPADLHDFVEASLQNESLAVMTMVYGIHKYFFYNSP 284



 Score = 38.0 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
            KALT +  +  +  + E LEFLGD  L   +S   F  +    EG+LS   + +VS E 
Sbjct: 1   LKALTLARANDDF--NLETLEFLGDSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNEN 58

Query: 84  CSQVARELDLASFIRVSSDLRKDVC 108
             Q+  ++ L  +I   +  + D+ 
Sbjct: 59  LYQIGIKMGLPGYIIGHNVDQNDIW 83


>gi|89114026|gb|ABD61604.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 88.4 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  +I+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYIITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                G L+   ++LV+    + +A       F R 
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764


>gi|119487905|ref|ZP_01621402.1| Ribonuclease III [Lyngbya sp. PCC 8106]
 gi|119455481|gb|EAW36619.1| Ribonuclease III [Lyngbya sp. PCC 8106]
          Length = 242

 Score = 88.4 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 9/211 (4%)

Query: 5   RYSTLEKRIGYAFAN---RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   L +R+G +  +     LL+ ALTH SIS     +YE+LEF+GD ++ L  S  L+ 
Sbjct: 11  QLQKLVERLGLSEQDAIQWHLLDLALTHPSISME--ANYEQLEFVGDAVVRLAASEFLWE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--LRKDVCSFMTSIQADVV 119
            +     GE S   + LVS    +++A    +  ++ +       +       +   + +
Sbjct: 69  TYPKQPVGEFSAIRSVLVSDRFLAEIAESYGMGRYLLIGGSAAQDRMGEQSRLADCLEAI 128

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +       +  +               +     R++ K  LQEW  + + V PEY VT 
Sbjct: 129 LAAFYLSTHNLQLIHPWLEPHFQKGATQILRDPARQNYKAALQEWTQSHYKVLPEYTVTE 188

Query: 180 RSGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209
            SGP  D  R+T  V   G    +G   S +
Sbjct: 189 -SGPMGDEERYTAQVWFQGKPVGEGRGRSIK 218


>gi|167046022|gb|ABZ10542.1| dicer-like protein B [Placozoa sp. DMJ-2008]
          Length = 357

 Score = 88.4 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIST 57
           +A     LE  +GY+F +R LL  ALTH++ +H       E Y+RLEFLGD IL  ++  
Sbjct: 180 NAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAILQYIVVR 239

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
             ++  ++ K  +L     + +  E+ + +     +  +   +S 
Sbjct: 240 HCYHANNNYKPADLHDFVEASLQNESLAAMTMVYGIHKYFFYNSP 284


>gi|89114046|gb|ABD61614.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 88.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                G L+   ++LV+    + +A       F R 
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764


>gi|89114024|gb|ABD61603.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 88.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                G L+   ++LV+    + +A       F R 
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764


>gi|89114020|gb|ABD61601.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 88.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                G L+   ++LV+    + +A       F R 
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764


>gi|89114022|gb|ABD61602.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 88.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                G L+   ++LV+    + +A       F R 
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764


>gi|89114040|gb|ABD61611.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 88.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                G L+   ++LV+    + +A       F R 
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764


>gi|89114034|gb|ABD61608.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 88.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                G L+   ++LV+    + +A       F R 
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764


>gi|89114050|gb|ABD61616.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 88.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                G L+   ++LV+    + +A       F R 
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764


>gi|89114048|gb|ABD61615.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 88.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                G L+   ++LV+    + +A       F R 
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764


>gi|89114042|gb|ABD61612.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 88.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                G L+   ++LV+    + +A       F R 
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764


>gi|89114038|gb|ABD61610.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 88.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                G L+   ++LV+    + +A       F R 
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764


>gi|89114032|gb|ABD61607.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 88.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                G L+   ++LV+    + +A       F R 
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764


>gi|89114044|gb|ABD61613.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 88.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                G L+   ++LV+    + +A       F R 
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764


>gi|89114036|gb|ABD61609.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 88.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                G L+   ++LV+    + +A       F R 
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764


>gi|89114030|gb|ABD61606.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 88.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                G L+   ++LV+    + +A       F R 
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764


>gi|167538060|ref|XP_001750696.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163770830|gb|EDQ84509.1| predicted protein [Monosiga brevicollis MX1]
          Length = 603

 Score = 88.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 99/223 (44%), Gaps = 17/223 (7%)

Query: 15  YAFANRSLLEK----ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           Y+ AN + + +    ALTH S + + Q S ERLEFLGDR+L L  +  L++ F    EG 
Sbjct: 289 YSAANITYVLERTRPALTHGSRASAEQPSNERLEFLGDRVLNLAAAEHLYHAFPKEGEGV 348

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+ + +++V+A+    +A+ L L   I+V   +     S  T +  D VE+L+ A+ LDG
Sbjct: 349 LTKKLSAMVNAQALHGMAKRLKLDQHIQVIEGVDL---SERTRVLGDAVEALLGAILLDG 405

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           G   A       W      +    ++A   L +            +    S  +    + 
Sbjct: 406 GWPAALAVTHHLWSISHTPTRTNFKEALQILAQKFEPHELPIYTPRGCDES--ESVRTWH 463

Query: 191 VVVEIS--------GLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           V VE +              G   S +AAEQ AA  VLK+  I
Sbjct: 464 VRVEANLPSSWWGPIQLMGHGQGTSIKAAEQAAAISVLKQLNI 506


>gi|210622528|ref|ZP_03293221.1| hypothetical protein CLOHIR_01169 [Clostridium hiranonis DSM 13275]
 gi|210154163|gb|EEA85169.1| hypothetical protein CLOHIR_01169 [Clostridium hiranonis DSM 13275]
          Length = 204

 Score = 88.1 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 89/184 (48%), Gaps = 4/184 (2%)

Query: 29  HSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86
           HSS S+  ++    ER+EFLGD +LGL+IS  +F       EGEL+    ++V   + S+
Sbjct: 1   HSSYSNENKKFKYNERMEFLGDSVLGLVISDHIFKKETGVPEGELTKLRANIVCEGSLSE 60

Query: 87  VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146
            A+ + L  +I +             SI AD  E++IAA+YLDGGIE A  F+       
Sbjct: 61  AAKNIRLGDYILLGRGEEATGGRERKSILADAFEAVIAAIYLDGGIESASKFILSNLSDI 120

Query: 147 ALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
              S   K  RD KT+LQE           YK+    GPDH+  F ++V +       G 
Sbjct: 121 IKDSIDGKIFRDYKTQLQEEIQKNGSSNIWYKLLDEDGPDHNKTFIMMVGVEDRELGVGK 180

Query: 205 DCSK 208
             SK
Sbjct: 181 GKSK 184


>gi|241896736|emb|CAZ65730.1| dicer-2 protein [Mucor circinelloides f. lusitanicus]
          Length = 1608

 Score = 88.1 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 90/251 (35%), Gaps = 33/251 (13%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +L    + + +G  F    L+ +ALTH+S+ +S    Y+RLEFLGD IL  ++   LF  
Sbjct: 1322 SLDLPKVTEIVGREFKTPLLIVEALTHASLPNSTSPCYQRLEFLGDAILDFMVIRYLFAR 1381

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL------------------- 103
            +  A  G ++   +S V+      V  E  L   I   S                     
Sbjct: 1382 YPDADPGIITDLKDSCVNNHILGIVCIETGLYRHIIHYSGKLIRAIEFFVSEVEETKARG 1441

Query: 104  ----RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFR 154
                   V   +  + +DVVES++ A ++D G      E              +     +
Sbjct: 1442 EAVGEYWVDFNIPKVLSDVVESMLGATFVDAGFRLEAVEELFAKWFLPILNNHVTPELIK 1501

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTF--RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 +L          +   +      +GP+       V+ +     A G D + + A 
Sbjct: 1502 FHPLRKLITDLQRFGCDSFMLRNHGSGETGPESQK---CVIFLHDKPLATGSDWNIKTAR 1558

Query: 213  QVAAAEVLKRE 223
            + AA +  +R 
Sbjct: 1559 RHAATKASQRL 1569



 Score = 41.8 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 24   EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
             +A T  S +     +YERLE LGD +L  + +  L+ +F  + EGEL      ++    
Sbjct: 1151 LEAYTTPSANMEM--NYERLETLGDSLLKFIATIRLYINFPFSNEGELHHLRIRVICNRA 1208

Query: 84   CSQVARELDLASFIRVSSDLRKD 106
              + A+ L    ++   +  R+ 
Sbjct: 1209 LYRSAKRLKFYRYVTSQAFNRRY 1231


>gi|119478976|ref|XP_001259517.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
 gi|158706438|sp|A1DE13|DCL1_NEOFI RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
 gi|119407671|gb|EAW17620.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
          Length = 1538

 Score = 88.1 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 84/247 (34%), Gaps = 35/247 (14%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
            +E+ +GY F    LL  A+TH S+  ++      Y+RLEFLGD +L ++    LF  F  
Sbjct: 1257 VEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPD 1316

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---------------------- 103
                 L+    ++VS +    ++ +L     I   S+                       
Sbjct: 1317 RDPQWLTEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIESAQAESRGA 1376

Query: 104  --RKDVCSFMTSIQADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRALKSGKFRRD 156
                 V         D+VE+ + A+++D        EV      K + +       F   
Sbjct: 1377 VDYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDFQVIEVFFERQIKPFFEDMSIYDTFANK 1436

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGP--DHDP-RFTVVVEISGLAPAQGMDCSKRAAEQ 213
              T               Y +     P  D  P      V + G   ++    S R A+ 
Sbjct: 1437 HPTTFLHNKLTNEYGCTNYCLKAGELPTIDGAPAGVLAAVIVHGNVISEARSSSSRYAKV 1496

Query: 214  VAAAEVL 220
             A+ + L
Sbjct: 1497 KASEKAL 1503



 Score = 45.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 12/98 (12%)

Query: 20   RSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
                 +A T        H            ++YERLEFLGD  L +  S  L+       
Sbjct: 1058 PDFALEAFTKDSDNTEEHRGQQIHFQRGMGKNYERLEFLGDCFLKMATSIALYTQNPDDD 1117

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
            E +  V    L+  +     A +  +  +IR     R 
Sbjct: 1118 EFDYHVNRMCLICNKNLFNTAIKKQIYRYIRSRGFSRH 1155


>gi|120403163|ref|YP_952992.1| ribonuclease III [Mycobacterium vanbaalenii PYR-1]
 gi|119955981|gb|ABM12986.1| RNAse III [Mycobacterium vanbaalenii PYR-1]
          Length = 235

 Score = 88.1 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 6/193 (3%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL  ALTH S S+      + ERLEFLGD +LGL I+  L++      EG+L+    S+
Sbjct: 19  ELLTIALTHRSYSYENGGVPTNERLEFLGDSVLGLTITEELYHRHPDRSEGDLAKLRASI 78

Query: 79  VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           V+ +  + V R L    L +++ +         +  +SI AD VESL+ A+YL+ G EVA
Sbjct: 79  VNTQALADVGRNLTEHGLGAYLLLGKGEENSGGADKSSILADGVESLLGAIYLECGGEVA 138

Query: 136 GTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
              + + +      +             +   A  G+     V   +GPDHD  FT  V 
Sbjct: 139 REVILRLFSSLLDTAPTLGAGLDWKSSLQELTASRGLGAPTYVVTSTGPDHDKEFTAAVM 198

Query: 195 ISGLAPAQGMDCS 207
           +      +G+  +
Sbjct: 199 VGDSECGRGVGRT 211


>gi|89114028|gb|ABD61605.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 88.1 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEKFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                G L+   ++LV+    + +A       F R 
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH 2030



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1666 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1723

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     ++ R   L  ++  +     D            +E
Sbjct: 1724 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELE 1764


>gi|80979089|gb|ABB54747.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 88.1 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++LV+  T + +     L  FI   +    ++ S   + Q      +
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1543

Query: 123  IAAL 126
               +
Sbjct: 1544 TNYV 1547



 Score = 38.8 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 3/121 (2%)

Query: 103  LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                    +     DV+E+LIAA+YLD         V     +  L+    +       Q
Sbjct: 1593 FNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTRKVPINHIRQ 1652

Query: 163  EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               H          +          +FT    +       G   +K  A+  AA   L++
Sbjct: 1653 LVEHKHAKPVFSSPIVEGETVMVSCQFTC---MEKTIKVYGFGSNKDQAKLSAAKHALQQ 1709

Query: 223  E 223
             
Sbjct: 1710 L 1710


>gi|80979097|gb|ABB54751.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 88.1 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++LV+  T + +     L  FI   +    ++ S   + Q      +
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1543

Query: 123  IAAL 126
               +
Sbjct: 1544 TNYV 1547



 Score = 38.8 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 3/121 (2%)

Query: 103  LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                    +     DV+E+LIAA+YLD         V     +  L+    +       Q
Sbjct: 1593 FNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTRKVPINHIRQ 1652

Query: 163  EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               H          +          +FT    +       G   +K  A+  AA   L++
Sbjct: 1653 LVEHKHAKPVFSSPIVEGETVMVSCQFTC---MEKTIKVYGFGSNKDQAKLSAAKHALQQ 1709

Query: 223  E 223
             
Sbjct: 1710 L 1710


>gi|80979099|gb|ABB54752.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 88.1 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++LV+  T + +     L  FI   +    ++ S   + Q      +
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1543

Query: 123  IAAL 126
               +
Sbjct: 1544 TNYV 1547



 Score = 38.8 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 3/121 (2%)

Query: 103  LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                    +     DV+E+LIAA+YLD         V     +  L+    +       Q
Sbjct: 1593 FNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTRKVPINHIRQ 1652

Query: 163  EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               H          +          +FT    +       G   +K  A+  AA   L++
Sbjct: 1653 LVEHKHAKPVFSSPIVEGETVMVSCQFTC---MEKTIKVYGFGSNKDQAKLSAAKHALQQ 1709

Query: 223  E 223
             
Sbjct: 1710 L 1710


>gi|80979085|gb|ABB54745.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 88.1 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++LV+  T + +     L  FI   +    ++ S   + Q      +
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1543

Query: 123  IAAL 126
               +
Sbjct: 1544 TNYV 1547



 Score = 38.8 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 3/121 (2%)

Query: 103  LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                    +     DV+E+LIAA+YLD         V     +  L+    +       Q
Sbjct: 1593 FNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTRKVPINHIRQ 1652

Query: 163  EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               H          +          +FT    +       G   +K  A+  AA   L++
Sbjct: 1653 LVEHKHAKPVFSSPIVEGETVMVSCQFTC---MEKTIKVYGFGSNKDQAKLSAAKHALQQ 1709

Query: 223  E 223
             
Sbjct: 1710 L 1710


>gi|330913942|ref|XP_003296428.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1]
 gi|311331414|gb|EFQ95479.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1]
          Length = 1572

 Score = 88.1 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 78/253 (30%), Gaps = 37/253 (14%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             +E +  Y F    LL  A  H S  +      +Y+RLEFLGD +L +   T L+  +  
Sbjct: 1283 KIEAKHPYHFKYPRLLRSAFAHPSYPYIYENIPNYQRLEFLGDSLLDMAFITHLYYKYPD 1342

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-------------- 111
                 L+     +VS +    V  +L    +I+ ++ +                      
Sbjct: 1343 KDPQWLTEHKTPMVSNKFLGAVCVKLGWHVYIKQNTAILTSQIRDYVLEAQEAERESGGA 1402

Query: 112  ----------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-------- 153
                          ADV+E+  AAL++D   + +          +               
Sbjct: 1403 VDYWVTISEPPKCLADVIEAYTAALFVDAEFDFSVVQDFFNLHLKPFFEDMTLDAYENFA 1462

Query: 154  RRDAKTELQEWAHAKFGVTPEYK---VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                 T L       FG          T    PD       ++ I G      +  S R 
Sbjct: 1463 SNHPTTRLSRILSINFGCNDWRMGALETETIIPDKGKAIAAMIMIHGKVHFYSLGQSGRY 1522

Query: 211  AEQVAAAEVLKRE 223
            A   A+   L++ 
Sbjct: 1523 ARVRASHAALEKL 1535



 Score = 43.4 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 12/76 (15%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             +L  +ALT  S                   +YERLEFLGD  L +  S  +F       
Sbjct: 1065 PALALEALTKDSENSEEHGEEKINFKSGMGPNYERLEFLGDCFLKMATSLSVFVQQPDEN 1124

Query: 68   EGELSVRFNSLVSAET 83
            E E  VR   ++  + 
Sbjct: 1125 EFEFHVRRMEMLCNKN 1140


>gi|80979093|gb|ABB54749.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 87.7 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++LV+  T + +     L  FI   +    ++ S   + Q      +
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1543

Query: 123  IAAL 126
               +
Sbjct: 1544 TNYV 1547



 Score = 38.8 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 3/121 (2%)

Query: 103  LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                    +     DV+E+LIAA+YLD         V     +  L+    +       Q
Sbjct: 1593 FNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTRKVPINHIRQ 1652

Query: 163  EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               H          +          +FT    +       G   +K  A+  AA   L++
Sbjct: 1653 LVEHKHAKPVFSSPIVEGETVMVSCQFTC---MEKTIKVYGFGSNKDQAKLSAAKHALQQ 1709

Query: 223  E 223
             
Sbjct: 1710 L 1710


>gi|80979091|gb|ABB54748.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 87.7 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++LV+  T + +     L  FI   +    ++ S   + Q      +
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1543

Query: 123  IAAL 126
               +
Sbjct: 1544 TNYV 1547



 Score = 38.8 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 3/121 (2%)

Query: 103  LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                    +     DV+E+LIAA+YLD         V     +  L+    +       Q
Sbjct: 1593 FNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTRKVPINHIRQ 1652

Query: 163  EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               H          +          +FT    +       G   +K  A+  AA   L++
Sbjct: 1653 LVEHKHAKPVFSSPIVEGETVMVSCQFTC---MEKTIKVYGFGSNKDQAKLSAAKHALQQ 1709

Query: 223  E 223
             
Sbjct: 1710 L 1710


>gi|87123193|ref|ZP_01079044.1| putative ribonuclease III [Synechococcus sp. RS9917]
 gi|86168913|gb|EAQ70169.1| putative ribonuclease III [Synechococcus sp. RS9917]
          Length = 231

 Score = 87.7 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 13/227 (5%)

Query: 7   STLEKRIGYAF----ANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
             L +++G +      +  L  L +ALTH+S        +E+LEFLGD +L L  +  + 
Sbjct: 2   EQLWQQLGLSPPLPLKDDELAQLNEALTHTS--SGLHPHHEQLEFLGDAVLRLAATEFIA 59

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +       GE S     LVS +  +Q+  ++ +A + ++ +    DV     +++A++ E
Sbjct: 60  STQPQLPMGERSALRAQLVSDQWLAQLGEQIGIARWWQIGAMASGDVA-GHATLRAELSE 118

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+Y  GG++    ++  YW+  +        R ++K+ LQEW+  +    P Y   
Sbjct: 119 ALIGAIYAIGGLQAVQAWLTPYWQPTSAAVLADPHRGNSKSALQEWSQGQALGLPAYDTR 178

Query: 179 FRSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             S    DPR F   V +  L  A+G   S+R AEQ AAA +L    
Sbjct: 179 EASRRHGDPRRFHCRVSLPDL-LAEGWGGSRREAEQHAAAALLAEIK 224


>gi|313206470|ref|YP_004045647.1| rnase iii [Riemerella anatipestifer DSM 15868]
 gi|312445786|gb|ADQ82141.1| RNAse III [Riemerella anatipestifer DSM 15868]
 gi|315023589|gb|EFT36593.1| Ribonuclease III [Riemerella anatipestifer RA-YM]
 gi|325336084|gb|ADZ12358.1| dsRNA-specific ribonuclease [Riemerella anatipestifer RA-GD]
          Length = 247

 Score = 87.7 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 13/223 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK +G      S  ++A +  S S     +Y+RLEFLGD +LG ++S  L+  +    E
Sbjct: 30  LEKILGIQPKEVSWYQEAFSLKSTSSQL--NYDRLEFLGDAVLGSIVSYYLYRQYPQESE 87

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V+ +  +Q+  +L+L S +  +         F+  +  +++E+L+ A+Y+
Sbjct: 88  GFLTQMKSKIVNRKNLNQIGEKLNLTSLVLKN------GSKFVADLSGNLLEALVGAIYM 141

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDP 187
           D G E     V       +       +    +      ++         T     P    
Sbjct: 142 DFGYEKCQKVVLSKILTHSEMLKLENKIISYKSLLLEWSQKNKIKIDYKTEEEFLPSKVK 201

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL----KREGIW 226
            F   + + G   A   + SK+ +E+ AA        K+E I 
Sbjct: 202 MFKTYIFVGGSKVASATETSKKKSEEKAAQRAFYTLNKKEKII 244


>gi|294787403|ref|ZP_06752656.1| ribonuclease III [Parascardovia denticolens F0305]
 gi|315227028|ref|ZP_07868815.1| ribonuclease III [Parascardovia denticolens DSM 10105]
 gi|294484759|gb|EFG32394.1| ribonuclease III [Parascardovia denticolens F0305]
 gi|315119478|gb|EFT82611.1| ribonuclease III [Parascardovia denticolens DSM 10105]
          Length = 290

 Score = 87.7 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 101/265 (38%), Gaps = 49/265 (18%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64
             L   +G + +   LL +ALTH S ++ +    +YERLEFLGD +L L+ +  L+    
Sbjct: 19  QELFDELGVSIS-PDLLIEALTHRSFANEHPGTRNYERLEFLGDAVLELVATETLYKAHP 77

Query: 65  SAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           +  EG++S   + +VS E+ +++AR+ L ++  I +    R+D  +   SI  D+VESL 
Sbjct: 78  NYTEGQMSKIRSKVVSEESLAEIARDKLKISPMILLGIGERRDGGADKDSILCDIVESLF 137

Query: 124 AALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A++++ GIE A   + +         + +               +  +          G
Sbjct: 138 GAIFVEYGIETARKVIHRLLDDNLHYYTAEGPALDWKTAIVVKAHELDLGEVNYQMEVGG 197

Query: 183 PDHDPRFTVVVEI--------------------------------------------SGL 198
           P +   FT  + +                                               
Sbjct: 198 PSNRLEFTAHLFLVKEPDADTAQGKSTATAENMASAGNKAHSENPESSVADDAGKTSGRQ 257

Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223
             + G   SKR A+  AA +  +  
Sbjct: 258 EISVGHGSSKRKAQLDAAEKAWRLL 282


>gi|297739192|emb|CBI28843.3| unnamed protein product [Vitis vinifera]
          Length = 287

 Score = 87.3 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 92/237 (38%), Gaps = 27/237 (11%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              +E+ +GY+F N+ LLE+A TH+S     Q SYERLEF+GD +L LLI+   F  +  
Sbjct: 30  LEGVEQILGYSFTNKRLLEEAYTHASCQK-NQFSYERLEFMGDSVLSLLITKEQFFLYPD 88

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL-----------------RKDVC 108
            + G L+   ++ V  E  ++VA +  L  F+R                        +  
Sbjct: 89  LQPGRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHSNGQ 148

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHA 167
             +  + ADVVES I A+++D    V   +       +  +     +    TEL E    
Sbjct: 149 IEVPKVLADVVESTIGAVFVDCNCSVDTVWKVFKGLLEPMIVPETLKVHPVTELNERCQK 208

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVLKRE 223
           +           R G        +   I      +G    ++  A   AA   L   
Sbjct: 209 RGLKLEFKDSWQRRGD-------IDFYIEDYFAGRGEYPLRKDIALNRAAKAALNNI 258


>gi|293399592|ref|ZP_06643745.1| ribonuclease III [Neisseria gonorrhoeae F62]
 gi|291610161|gb|EFF39283.1| ribonuclease III [Neisseria gonorrhoeae F62]
          Length = 267

 Score = 87.3 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F   
Sbjct: 40  TAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPKL 96

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA+
Sbjct: 97  TEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAAV 156

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V   + +R  +       +D KT LQE   A+    P+Y++  + G  
Sbjct: 157 SFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHA 216

Query: 185 HDPRFTVVVEISGL-APAQGMDCSK 208
            D  F +  ++  L    +    S+
Sbjct: 217 DDSMFVISCDLGELGFVCRAKGTSR 241


>gi|257055001|ref|YP_003132833.1| RNAse III [Saccharomonospora viridis DSM 43017]
 gi|256584873|gb|ACU96006.1| RNAse III [Saccharomonospora viridis DSM 43017]
          Length = 250

 Score = 87.3 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 7/207 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           ++L + +G    +  LL  ALTH S ++        ERLEFLGD +LGL+++  L+    
Sbjct: 14  TSLLEALGVEI-DSELLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLYRQHP 72

Query: 65  SAKEGELSVRFNSLVSAET---CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              EG+L+    S+V+       ++   E  L + + +             SI AD +E+
Sbjct: 73  DLPEGQLAKLRASVVNMHALAGVARSLGEGGLGAHLLLGKGEELTGGRDKASILADGLEA 132

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFR 180
           +I A+YL+ GIE A + V + + +   ++ +           +   A  G+         
Sbjct: 133 VIGAVYLEHGIETARSLVHRLFGRLLAEAPRRGAGLDWKTSLQELTASAGLGVPEYKVVD 192

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +GPDH   F+ VV ++G    +G   +
Sbjct: 193 TGPDHRKEFSAVVLVNGRDLGRGDGTT 219


>gi|167470281|ref|ZP_02334985.1| ribonuclease III [Yersinia pestis FV-1]
          Length = 195

 Score = 87.3 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 98/196 (50%), Gaps = 5/196 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSAS---SKHNERLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      + +++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIHTIERLILEWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVE 194
              G  HD  F     
Sbjct: 178 QVRGEAHDQEFISTAR 193


>gi|222629185|gb|EEE61317.1| hypothetical protein OsJ_15421 [Oryza sativa Japonica Group]
          Length = 1632

 Score = 87.3 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 52/103 (50%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M     + LE+ IGY F ++ LL +A  H S S      Y++ EFLGD +L  +I++ L+
Sbjct: 1177 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQKTEFLGDAVLEYVITSYLY 1236

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
            + +   K G+++   +  V  ++ +  A E  +   +   S+ 
Sbjct: 1237 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNH 1279



 Score = 41.5 bits (95), Expect = 0.088,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 148  LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPA 201
                   + A++ L E   A +   PE+K+    GP H  +FT  VVVEI G    L   
Sbjct: 1536 YHGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLEC 1595

Query: 202  QGMDC-SKRAAEQVAAAEV---LKREG 224
                   K+AA++ AA      LK+ G
Sbjct: 1596 HSDGKLQKKAAQEHAAQGALWCLKQLG 1622



 Score = 38.8 bits (88), Expect = 0.64,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 15/115 (13%)

Query: 2    SALRYSTLEKRI-GYAFANRSLLEKALTHSSISHSYQESY------------ERLEFLGD 48
             +L Y+ +EK I  +   + + L  A+  S      + S             +RLEFLGD
Sbjct: 1258 DSLAYAAVEKSIHKHLIKDSNHLTSAI--SKFEMYVKLSNSEKDLLEEPACPKRLEFLGD 1315

Query: 49   RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
             +L  +I++ L++ +   K G+++   +  V  ++ +  A E  +   +   S+ 
Sbjct: 1316 AVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNH 1370



 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 3/130 (2%)

Query: 23   LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
            + +ALT          S ER E LGD  L  ++    F  ++   EG+L+ R + +V+  
Sbjct: 995  ILEALTTEKCLERI--SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNS 1052

Query: 83   TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
               +++    L  +IR                   V  + +        I          
Sbjct: 1053 HLYELSIRKKLQVYIRDQQ-FEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNL 1111

Query: 143  WKQRALKSGK 152
               R+     
Sbjct: 1112 RCTRSHHWLH 1121


>gi|161579129|gb|ABX72052.1| Dicer-1 protein [Tribolium castaneum]
          Length = 157

 Score = 86.9 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           Y   E+ IGY F +RS L +ALTH+S S ++  + Y+RLEFLGD +L  LI+  L+    
Sbjct: 63  YDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTR 122

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
               G L+   ++LV+    + +A       + R 
Sbjct: 123 MHSPGALTDLRSALVNNTIFASLAVRNGFHRYFRN 157


>gi|312213955|emb|CBX93957.1| similar to dicer-like protein 1 [Leptosphaeria maculans]
          Length = 1588

 Score = 86.9 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 76/248 (30%), Gaps = 41/248 (16%)

Query: 15   YAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            Y F    L+  A TH S ++   +  +Y+RLEFLGD +L +     L+  +       L+
Sbjct: 1291 YHFKYPRLVRSAFTHPSYAYMFEHIPNYQRLEFLGDSLLDMAFIMHLYYKYPDKDPQWLT 1350

Query: 73   VRFNSLVSAETCSQVARELDLASFIRVSSD------------------------LRKDVC 108
                 +VS +    V  +L     ++ ++                               
Sbjct: 1351 EHKTPMVSNKFLGAVCVKLGWHRHLKSNTAILSTQIRDYVLEIDEAEREANGAVDYWVNV 1410

Query: 109  SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--------RRDAKTE 160
                   ADV+E+ +AAL++D   + +          +   +                T 
Sbjct: 1411 HEPPKCLADVIEAYVAALFVDSQFDFSVVQSFFDRHLKPFFADMTLDAYENFASNHPTTR 1470

Query: 161  LQEWAHAKFGVTPEYK---VTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQVA 215
            L       FG +        T    P        +V I G       G     R A   A
Sbjct: 1471 LSRLLSISFGCSDWRMGARETDTVIPGKGKAIAAMVMIHGKVWFHSLGQGG--RYARLRA 1528

Query: 216  AAEVLKRE 223
            +   L+R 
Sbjct: 1529 SHAALERL 1536



 Score = 43.4 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 12/78 (15%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             +L  +ALT  S                   +YERLEFLGD  L +  S  +F       
Sbjct: 1066 PALALEALTKDSENTDEHEEEKINFKSGMGPNYERLEFLGDCFLKMATSLSVFVQQPEEN 1125

Query: 68   EGELSVRFNSLVSAETCS 85
            E E  VR   ++  +   
Sbjct: 1126 EFEYHVRRMLMLCNQNLM 1143


>gi|313204618|ref|YP_004043275.1| ribonuclease iii [Paludibacter propionicigenes WB4]
 gi|312443934|gb|ADQ80290.1| ribonuclease III [Paludibacter propionicigenes WB4]
          Length = 277

 Score = 86.9 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 86/217 (39%), Gaps = 4/217 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             K +G+        + A+ H S+S    +    S ERLEFLGD +L  +++ +L+  + 
Sbjct: 23  FHKVLGFYPDKIEYYQLAVRHKSVSIPTENGRNLSNERLEFLGDAVLNSVVTDILYRRYK 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V  ++ +++A E+ L   ++V+  +     + +     + +   I 
Sbjct: 83  EEREGFLTNTRSKIVKRDSLNKLALEIGLDKLVKVTKYVNAHTNNNIYGNALEALLGAIY 142

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             Y     +               K  +   + K++L EW       T    ++      
Sbjct: 143 LDYGYKKCKKFVEQRLFKSFVNLDKVAENEVNFKSKLIEWCQKNKLETEFILLSETMSGS 202

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +   F   + I G    +    SK+ ++Q A+    +
Sbjct: 203 NKHVFLSGLMIQGQKICEASGMSKKESQQNASRIAFE 239


>gi|195996181|ref|XP_002107959.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens]
 gi|190588735|gb|EDV28757.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens]
          Length = 685

 Score = 86.9 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIST 57
           +A     LE  +GY+F +R LL  ALTH++ +H       E Y+RLEFLGD IL  ++  
Sbjct: 426 NAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAILQYIVVR 485

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
             ++  ++ K  +L     + +  E+ + +     +  +   +S 
Sbjct: 486 HCYHANNNYKPADLHDFVEASLQNESLAVMTMVYGIHKYFFYNSP 530



 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           + KALT +  +  +  + E LEFLGD  L   +S   F  +    EG+LS   + +VS E
Sbjct: 246 ILKALTLARANDDF--NLETLEFLGDSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNE 303

Query: 83  TCSQVARELDLASFIRVSSDLRKDVC 108
              Q+  ++ L  +I   +  + D+ 
Sbjct: 304 NLYQIGIKMGLPGYIIGHNVDQNDIW 329


>gi|260831340|ref|XP_002610617.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae]
 gi|229295984|gb|EEN66627.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae]
          Length = 1760

 Score = 86.9 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 94/240 (39%), Gaps = 37/240 (15%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E+ + Y+F +++ + +A TH S   ++  + Y+RLEFLGD +L  LI+  LF    
Sbjct: 1509 YQQFEETVQYSFNDKAYMLQAFTHPSYHYNTITDCYQRLEFLGDAVLDYLITNHLFKDPQ 1568

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111
                G L+   ++LV+    + +A + D   +++  S    ++ S               
Sbjct: 1569 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYLKFVSPELFNIISNFVQFQQEQGEEQGM 1628

Query: 112  -------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                    DV ES+  A+YLD G+ +   +   Y   + L    
Sbjct: 1629 DSQTYINDEGEEESEDIEVPKALGDVFESVAGAIYLDSGMSLETVWRVYYRMMKPLIDKF 1688

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
              +  ++ ++E    +            S   +D +  V V + G    +G+  + R A+
Sbjct: 1689 SAKVPRSPVRELLEMEPETAKF----SPSERTYDGKVRVTVTVIGKGQFKGVGRNYRIAK 1744



 Score = 38.8 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             SL+ +ALT S  +     + ERLE +GD  L   I+T L+  +    EG+LS   +  V
Sbjct: 1230 PSLILQALTLS--NAGDFFNLERLETIGDSFLKHAITTFLYCTYSRVHEGKLSYMRSRQV 1287

Query: 80   SAETCSQVARELD 92
            S     ++ +   
Sbjct: 1288 SNLNLYRLGKRKG 1300


>gi|88703551|ref|ZP_01101267.1| ribonuclease III [Congregibacter litoralis KT71]
 gi|88702265|gb|EAQ99368.1| ribonuclease III [Congregibacter litoralis KT71]
          Length = 224

 Score = 86.9 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 74/208 (35%), Positives = 106/208 (50%), Gaps = 8/208 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M A ++  LE++ G    N +LL +AL+H S+      + ERLEFLGD +LG ++S  L+
Sbjct: 1   MDAQQW--LERQFGCRLNNDALLHQALSHRSVGS---RNNERLEFLGDSVLGYVVSEELY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EG+LS    SLV     ++VARE+ L   +R+    R        SI AD  E
Sbjct: 56  RRFPDADEGQLSRLRVSLVKGSALAEVAREITLGEQLRLGVGERHGGGRRRNSILADSFE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+ LD GIE     + K +  R    K  + R+D KT LQE         PEY + 
Sbjct: 116 AILGAIVLDLGIEACRAAILKVFHARFEGLKLEQARKDPKTRLQELLQGSGRPLPEYVLR 175

Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMD 205
             +G DH   FTV  E+  G   A+G+ 
Sbjct: 176 KATGEDHARIFTVACELADGREVAEGIG 203


>gi|148985143|ref|ZP_01818382.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71]
 gi|147922588|gb|EDK73706.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71]
          Length = 153

 Score = 86.9 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 1/147 (0%)

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            +V  E+ +  AR+     FI++     K       +I  D  E+ + AL LD  +    
Sbjct: 1   MIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAFLGALLLDKDVAKVK 60

Query: 137 TFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
            F+ +    +      +   D KT LQE       V   Y+V   +GP HD  F V V +
Sbjct: 61  EFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISETGPAHDKVFDVEVLV 120

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            G +  QG   SK+ AEQ AA   +++
Sbjct: 121 EGKSIGQGQGRSKKLAEQEAAKNAVEK 147


>gi|167046026|gb|ABZ10544.1| dicer-like protein C [Placozoa sp. DMJ-2008]
          Length = 352

 Score = 86.9 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 2/146 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
               LEK IGY+F N+  + +ALTHSS  H     ES ++LEFLGD IL  +I+   FN 
Sbjct: 181 NLERLEKVIGYSFQNKLFMIRALTHSSYHHHNIAIESNQKLEFLGDTILQYIIARHFFNS 240

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              AK  +L     ++V+ +  + +   + ++ +I   S       +    I        
Sbjct: 241 HPDAKPAKLHDFQEAIVNNKCLADIGIAIGVSKYIFQESPDLFRDINQFVKIITCDYMID 300

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL 148
               Y D    +   F ++    + +
Sbjct: 301 DEMNYNDRTEALFENFTEEVKIPKPM 326


>gi|157167186|ref|XP_001652212.1| dicer-1 [Aedes aegypti]
 gi|108877338|gb|EAT41563.1| dicer-1 [Aedes aegypti]
          Length = 1658

 Score = 86.9 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             Y  +E  +GY F +R+ L +ALTH+S  ++    SY++LEFLGD +L  LIS  +F   
Sbjct: 1400 NYRRIESILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQN 1459

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
             +   G+L+   ++LV+  T + +     L  +
Sbjct: 1460 PTMSPGQLTDLRSALVNNVTLACILVRHGLHLY 1492



 Score = 40.3 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 2/107 (1%)

Query: 23   LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
            + KALT  S S  +    ER E LGD  L   IS  L  +     EG L+     +VS  
Sbjct: 1175 IIKALTTKSSSDVF--DLERYELLGDAFLKFSISLYLVKYHKEWHEGFLTAVKGQIVSNR 1232

Query: 83   TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
                 A +  L   +++     K+      +     ++  + ++   
Sbjct: 1233 NLVYCAIKYGLPGMLKIHKFDPKNDWQPPLATVPKNIKRTMQSVNHS 1279


>gi|258567596|ref|XP_002584542.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237905988|gb|EEP80389.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1055

 Score = 86.9 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 3   ALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
            +   + +++++GY F    LL  A THSS   ++     Y+RLEFLGD +L +     L
Sbjct: 859 EIDLVAQIKEKLGYQFKYPKLLRSAFTHSSYPSAWAAVPCYQRLEFLGDSLLDMACVEHL 918

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ++ +       L+    ++VS +    VA +L L   +R  
Sbjct: 919 YHRYPDKDPQWLTEHKMAMVSNKFLGCVAVKLGLHPHLRHF 959



 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 12/90 (13%)

Query: 21  SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            L  +ALT        H +          ++YERLEFLGD  L +  S  LF       E
Sbjct: 669 ELALEALTKDSDNTEEHRAMQVHFQRGMGKNYERLEFLGDCFLKMATSISLFTMNPDNDE 728

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIR 98
            +  V+   LV  +   + A  L L  FIR
Sbjct: 729 YDFHVKRMCLVCNQNLFKAALNLKLYEFIR 758


>gi|332029751|gb|EGI69620.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior]
          Length = 1257

 Score = 86.5 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             TLE +IGY F NR+ L +A TH S  ++   E Y+RLEFLGD IL  LI+  ++ +  +
Sbjct: 1002 DTLESKIGYKFKNRAFLLQAFTHPSYTANGITECYQRLEFLGDAILDFLITCYIYENDVN 1061

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLA 94
               G+L+   ++LV+  T + ++    L 
Sbjct: 1062 LSPGDLTDLRSALVNNITFACLSVRHGLH 1090


>gi|118462414|ref|YP_882955.1| ribonuclease III [Mycobacterium avium 104]
 gi|254776229|ref|ZP_05217745.1| ribonuclease III [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118163701|gb|ABK64598.1| ribonuclease III [Mycobacterium avium 104]
          Length = 237

 Score = 86.5 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 7/207 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
             L   +G    +  LL  ALTH S ++ +    + ERLEFLGD +LGL I+  L++   
Sbjct: 5   QPLLDALGVELPD-ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDALYHRHP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---KDVCSFMTSIQADVVES 121
              EG+L+    S+V+ +  + VAR+L            R       +  +SI AD +ES
Sbjct: 64  DRTEGDLAKLRASVVNTQALADVARKLCDGGLGAHLLLGRGEANTGGADKSSILADGMES 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFR 180
           L+ A+YL  GI+ A   + + +      +             +   A  G+     +   
Sbjct: 124 LLGAIYLQHGIDTAREVILRLFGALLDAAPTLGAGLDWKTSLQELTAARGMGAPSYLVTS 183

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +GPDHD  FT VV ++      G+  S
Sbjct: 184 TGPDHDKEFTAVVVVADTEYGTGVGRS 210


>gi|41409093|ref|NP_961929.1| ribonuclease III [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|81413486|sp|Q73VL8|RNC_MYCPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|41397452|gb|AAS05312.1| Rnc [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 237

 Score = 86.5 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 7/207 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
             L   +G    +  LL  ALTH S ++ +    + ERLEFLGD +LGL I+  L++   
Sbjct: 5   QPLLDALGVELPD-ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDALYHRHP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---KDVCSFMTSIQADVVES 121
              EG+L+    S+V+ +  + VAR+L            R       +  +SI AD +ES
Sbjct: 64  DRTEGDLAKLRASVVNTQALADVARKLCDGGLGAHLLLGRGEANTGGADKSSILADGMES 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFR 180
           L+ A+YL  GI+ A   + + +      +             +   A  G+     +   
Sbjct: 124 LLGAIYLQHGIDTAREVILRLFGALLDAAPTLGAGLDWKTSLQELTAARGMGAPSYLVTS 183

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +GPDHD  FT VV ++      G+  S
Sbjct: 184 TGPDHDKEFTAVVVVADTEYGTGVGRS 210


>gi|316961980|gb|EFV48479.1| endoribonuclease Dicer [Trichinella spiralis]
          Length = 325

 Score = 86.5 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 77/244 (31%), Gaps = 42/244 (17%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFN 61
             ++ E +IGY F N++ L +ALTHS  +       +SYERLEFLGD IL  LIS  L++
Sbjct: 62  DLNSFEAKIGYRFTNKAYLIQALTHSLYNEVETPVTDSYERLEFLGDAILDYLISRHLYS 121

Query: 62  HFDSAKEGELSVRFNSLVSAE--------------------------TCSQVARELDLAS 95
                  G LS    +LV+                                    ++   
Sbjct: 122 SKRIRSPGLLSDLRAALVNNYFLYFNAELLSVNERFVLAMRGLKESVNFHNELYMMEEEQ 181

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK----------Q 145
                          +     D+ ES+  A++LD    +A  +   Y             
Sbjct: 182 DDDEKETSEFAEHVEVPKPLGDIFESVAGAIFLDSHCSLATVWQVYYNMIAEEIGKQRSD 241

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
               +        + ++     +        +    G        V V ++G     G  
Sbjct: 242 FTSFNKCLCHPPISPVRHLLELEPERVQFNILDREEGNSG---VHVQVVVTGKGSFIGSG 298

Query: 206 CSKR 209
            S R
Sbjct: 299 KSYR 302


>gi|241954756|ref|XP_002420099.1| RNAse III, putative; double-stranded ribonuclease, putative
           [Candida dubliniensis CD36]
 gi|223643440|emb|CAX42319.1| RNAse III, putative [Candida dubliniensis CD36]
          Length = 611

 Score = 86.5 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 22/227 (9%)

Query: 17  FANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             +  L E+   H S  ++ Q            ERLEF GD IL  L++ ++F  F  + 
Sbjct: 242 IKDPKLFERVFVHRSTVNNKQYLEANQLLHSHNERLEFYGDSILNNLVTLIIFKEFPDSA 301

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS   + LV+ +T  + A +      +R          +    I ADV E+ I AL 
Sbjct: 302 EGDLSKIRSRLVNNKTLVKFAFQYGFDKKLRTRISENVLK-TGDQKIFADVFEAYIGALA 360

Query: 128 LDGG------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           L+ G       E           +  ++  +   D + + + +A            T + 
Sbjct: 361 LEKGLEVEDVKEWLAKLYAPLIHELKIEYIEDPIDREAKSKLYALIGQDDLHPIYNTIQM 420

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA------EVLKR 222
           G   + +F V   I+G    +G   S + A   AA       E+LK+
Sbjct: 421 GDGINHKFIVQCTINGEELGRGSANSLKEAGLRAAMAGLNNTEILKK 467


>gi|242033789|ref|XP_002464289.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor]
 gi|241918143|gb|EER91287.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor]
          Length = 462

 Score = 86.5 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 77/230 (33%), Gaps = 22/230 (9%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFN- 61
           +   +L+  IGY F + SLL +ALTHSS +        ERLEFLGD +L  +++   +  
Sbjct: 217 IDVESLQTIIGYVFDDSSLLIEALTHSSYNTAGITTCNERLEFLGDAVLDYILTDYFYRK 276

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++       L+    + V+    +  A +  L   I  SS  +       +   +     
Sbjct: 277 YYPKCTPALLTNLRKASVNNWCYAHAAVKAGLHKHILHSSSKQMIKDLESSGPFSGPSHG 336

Query: 122 LI------------------AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
                               A     G  + A     +              D  +EL+E
Sbjct: 337 WEPGIGLPEDLADLFEAIAGAIYVDSGNDKEAVWRAMRRLLVPLATPETILLDPVSELKE 396

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAE 212
               K    P Y  T         R    V+ +G   +  G   ++  AE
Sbjct: 397 LCEHKNYPEPWYSPTRDD-AAGVTRVVAKVKAAGREYSDTGEGPNQDVAE 445


>gi|126697134|ref|YP_001092020.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9301]
 gi|126544177|gb|ABO18419.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9301]
          Length = 249

 Score = 86.1 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 3   ALRYSTLEKRIGYAFANRSLLE---KALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
            ++     + I     N S+++   +A  HSS       +YE+LEF GD +L L  S  +
Sbjct: 21  NIKSKRFSEII--ETQNISVIQDFNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASNFI 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              +     GE S     +VS E  +++ R++++   I        D  S  T I     
Sbjct: 77  EKKYPQLSVGERSELRAQIVSDEWLTKLGRKIEIDKLIIKGPKALGDENSKNTIIGEATE 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKV 177
             + A       I+    ++D  W++ + +     ++  +KT LQEW  +K    P YK+
Sbjct: 137 ALIGAVYKCFNSIQEINLWLDNIWEEDSEQFLKAPYKYKSKTVLQEWCQSKGFDLPVYKI 196

Query: 178 TFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              S  + D  RF+  + I GL  +     S + AE  AA  ++++
Sbjct: 197 MEVSKKNGDLKRFSCDIFIEGLKESSAFGKSHKQAETNAARVLIEK 242


>gi|195584278|ref|XP_002081941.1| Dcr-2 [Drosophila simulans]
 gi|194193950|gb|EDX07526.1| Dcr-2 [Drosophila simulans]
          Length = 1666

 Score = 86.1 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1378 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1437

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++LV+  T + +     L  FI   ++   +  S   + Q      +
Sbjct: 1438 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRV 1497

Query: 123  IAALY 127
               ++
Sbjct: 1498 TNYVH 1502


>gi|195335297|ref|XP_002034311.1| GM19969 [Drosophila sechellia]
 gi|194126281|gb|EDW48324.1| GM19969 [Drosophila sechellia]
          Length = 1731

 Score = 86.1 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1443 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1502

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++LV+  T + +     L  FI   ++   +  S   + Q      +
Sbjct: 1503 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRV 1562

Query: 123  IAALY 127
               ++
Sbjct: 1563 TNYVH 1567



 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 188  RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            +FT    +       G   +K  A+  AA   L+R  I
Sbjct: 1694 QFTC---MEKSIKVYGFGSNKNQAKLSAAKHALQRLSI 1728


>gi|80979105|gb|ABB54755.1| Dicer-2 [Drosophila simulans]
 gi|80979109|gb|ABB54757.1| Dicer-2 [Drosophila simulans]
          Length = 1714

 Score = 86.1 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++LV+  T + +     L  FI   ++   +  S   + Q      +
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRV 1545

Query: 123  IAALY 127
               ++
Sbjct: 1546 TNYVH 1550


>gi|80979101|gb|ABB54753.1| Dicer-2 [Drosophila simulans]
          Length = 1714

 Score = 86.1 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++LV+  T + +     L  FI   ++   +  S   + Q      +
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRV 1545

Query: 123  IAALY 127
               ++
Sbjct: 1546 TNYVH 1550


>gi|80979111|gb|ABB54758.1| Dicer-2 [Drosophila simulans]
          Length = 1564

 Score = 86.1 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++LV+  T + +     L  FI   ++   +  S   + Q      +
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRV 1545

Query: 123  IAALY 127
               ++
Sbjct: 1546 TNYVH 1550


>gi|80979113|gb|ABB54759.1| Dicer-2 [Drosophila simulans]
          Length = 1565

 Score = 86.1 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++LV+  T + +     L  FI   ++   +  S   + Q      +
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRV 1545

Query: 123  IAALY 127
               ++
Sbjct: 1546 TNYVH 1550


>gi|80979107|gb|ABB54756.1| Dicer-2 [Drosophila simulans]
          Length = 1567

 Score = 86.1 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++LV+  T + +     L  FI   ++   +  S   + Q      +
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRV 1545

Query: 123  IAALY 127
               ++
Sbjct: 1546 TNYVH 1550


>gi|80979115|gb|ABB54760.1| Dicer-2 [Drosophila simulans]
          Length = 1714

 Score = 86.1 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++LV+  T + +     L  FI   ++   +  S   + Q      +
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRV 1545

Query: 123  IAALY 127
               ++
Sbjct: 1546 TNYVH 1550


>gi|40215441|gb|AAR82738.1| SD11113p [Drosophila melanogaster]
          Length = 1640

 Score = 86.1 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 1/124 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1410 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1469

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++LV+  T + +     L  FI   +    ++ S   + Q      +
Sbjct: 1470 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1529

Query: 123  IAAL 126
               +
Sbjct: 1530 TNYV 1533


>gi|16215719|dbj|BAB69959.1| double-strand-specific ribonuclease [Drosophila melanogaster]
          Length = 1722

 Score = 86.1 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 1/124 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1431 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1490

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++LV+  T + +     L  FI   +    ++ S   + Q      +
Sbjct: 1491 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1550

Query: 123  IAAL 126
               +
Sbjct: 1551 TNYV 1554


>gi|80979087|gb|ABB54746.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 86.1 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 1/124 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++LV+  T + +     L  FI   +    ++ S   + Q      +
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1543

Query: 123  IAAL 126
               +
Sbjct: 1544 TNYV 1547



 Score = 38.8 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 3/121 (2%)

Query: 103  LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                    +     DV+E+LIAA+YLD         V     +  L+    +       Q
Sbjct: 1593 FNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTRKVPINHIRQ 1652

Query: 163  EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               H          +          +FT    +       G   +K  A+  AA   L++
Sbjct: 1653 LVEHKHAKPVFSSPIVEGETVMVSCQFTC---MEKTIKVYGFGSNKDQAKLSAAKHALQQ 1709

Query: 223  E 223
             
Sbjct: 1710 L 1710


>gi|156032684|ref|XP_001585179.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980]
 gi|154699150|gb|EDN98888.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1867

 Score = 86.1 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 74/231 (32%), Gaps = 25/231 (10%)

Query: 4    LRYS-TLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLF 60
            +  +  +E +  Y F    LL  A TH +   S+    SY+RLEFLGD +L +       
Sbjct: 1567 IDLARQVETKHPYHFKYPRLLRSASTHPAYPFSYEQIPSYQRLEFLGDALLDM------- 1619

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                     ++   +   ++       A            +               D+VE
Sbjct: 1620 -------VQKMVAEYACDINEALIQAKADAKRAGKSEDDYAPDYWITVRQPPKCLPDMVE 1672

Query: 121  SLIAALYLDGGIEV------AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
            + I A+++D   +           +  Y+K  ++      +   T L  +     G    
Sbjct: 1673 AFIGAIFVDSEYKFEEVEKFFEMHIRWYFKDMSIYDTYANKHPTTFLTNFLQKNMGCEDW 1732

Query: 175  YKVT-FRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              V+    G D         V +     +     S R A+  AA + L + 
Sbjct: 1733 APVSREMPGEDGRKNVVVCGVIVHNKVVSTFQAESMRYAKVGAAKKALAQL 1783



 Score = 44.1 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 12/91 (13%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +A+T  S                   +YERLEFLGD  L +  S  L+     + 
Sbjct: 1378 PDLALEAVTKDSDNSEEHGEEQTNFQRGMGNNYERLEFLGDCFLKMGTSISLYGLNPDSD 1437

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            E    V    L+  +     A +L+L  FIR
Sbjct: 1438 EFRYHVDRMCLICNKNLFNTALKLELYRFIR 1468


>gi|22026807|ref|NP_523778.2| Dicer-2 [Drosophila melanogaster]
 gi|21627058|gb|AAF57830.2| Dicer-2 [Drosophila melanogaster]
          Length = 1722

 Score = 86.1 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 1/124 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1431 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1490

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++LV+  T + +     L  FI   +    ++ S   + Q      +
Sbjct: 1491 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1550

Query: 123  IAAL 126
               +
Sbjct: 1551 TNYV 1554



 Score = 38.8 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 3/121 (2%)

Query: 103  LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                    +     DV+E+LIAA+YLD         V     +  L+    +       Q
Sbjct: 1600 FNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTRKVPINHIRQ 1659

Query: 163  EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               H          +          +FT    +       G   +K  A+  AA   L++
Sbjct: 1660 LVEHKHAKPVFSSPIVEGETVMVSCQFTC---MEKTIKVYGFGSNKDQAKLSAAKHALQQ 1716

Query: 223  E 223
             
Sbjct: 1717 L 1717


>gi|297794785|ref|XP_002865277.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297311112|gb|EFH41536.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 786

 Score = 86.1 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 90/270 (33%), Gaps = 56/270 (20%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M ++   T+EK + Y+F N++LL++A+T           ++RLEFLGD +L + ++  + 
Sbjct: 1   MDSM--ETVEKILNYSFKNKTLLKEAIT-------LSPRFKRLEFLGDSVLEVALANYIH 51

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---------------- 104
           + + + K  EL     + V+ E  ++   + +L  FI                       
Sbjct: 52  HAYPNLKLQELCDLRTANVNNEKFARATVKHNLYQFIIGEKSSSPSEKIKEFSEAVSKED 111

Query: 105 ----KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--------- 151
                        +  D+VES+  A+Y+D   +V   +         +            
Sbjct: 112 VPVPYGGLVEAPKVLGDIVESIAGAVYIDVDFDVQRFWEVCCVCLFFITFVFLISMLLIK 171

Query: 152 ------------------KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
                                +                  +      S  DH       V
Sbjct: 172 REEFLQIFRGLLEPIYTLDDLQMQPKPPFLTLFRLADKHGKRIDFRYSKDDHSKENIAEV 231

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + G+  A G   S   A+ +AA E +++ 
Sbjct: 232 YLDGIFIASGCTKSLSVAKVLAAEEAVQKL 261



 Score = 85.0 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 90/244 (36%), Gaps = 30/244 (12%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M +     +EK + Y F N++LL++AL  +S        +++L F+G   L L I+  ++
Sbjct: 467 MDSDSVKAVEKILNYVFTNKNLLKEALRQTS------SLFQKLRFVGRAALVLAITNHIY 520

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS----------- 109
             + + +  EL +        +T ++VA + ++  F        K + +           
Sbjct: 521 LRYPNFEPRELELLQRGNTCNKTLARVAVKHNIHQFFIGQFKSEKKIEAFSKVVGKEDDP 580

Query: 110 --------FMTSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKTE 160
                     T++ +D+VES+  A+Y+D   ++       +   +        R   +  
Sbjct: 581 VPSDGRSERTTNVLSDLVESVAGAVYIDMNFDIKRLWESFRGLFEPLYTLDDLRLRPQPI 640

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEV 219
                                G +   R+   V +     A G    S+  A+  AA E 
Sbjct: 641 HTLSCLGDKDGKHFDFRYEEKGSN---RYKAHVYLDDKLIASGKKKNSRDDAKMSAAMEA 697

Query: 220 LKRE 223
           +++ 
Sbjct: 698 VRKL 701



 Score = 42.6 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE-----ISGLAPAQGMDC-SKRA 210
            K +L +         P Y++    GP ++ +F   V+     I G    +G     K+ 
Sbjct: 365 PKGKLHKICVKNKWPFPIYRIEEERGPKNEQKFVCSVKIEIPNIEGSFHMKGDAKPKKKE 424

Query: 211 AEQVAAAEVLKRE 223
           AE  +A  +++  
Sbjct: 425 AENSSAYHMIRAL 437


>gi|282901412|ref|ZP_06309337.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505]
 gi|281193691|gb|EFA68663.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505]
          Length = 238

 Score = 86.1 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 8/221 (3%)

Query: 5   RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  +L +++G +  +     LL+ ALTH ++S     +YE+LEF+GD ++ L+ + +L+ 
Sbjct: 11  QLESLIQKLGLSANSPIKWPLLDLALTHPTVSE--SANYEQLEFVGDAVVRLVAAVVLWE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--RKDVCSFMTSIQADVV 119
            +     G+ +   + LVS    +++ARE  L  ++ V+              +   + +
Sbjct: 69  SYPDCCVGDFAAIRSVLVSDRILARLAREYGLELYLLVAGSATADNVGQESRLADAFEAL 128

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
              +     +  +               ++    + + K  LQEW  A + V PEY+V  
Sbjct: 129 LGALYLSTQNLILIRPWLDPHFQELAEQIRLDPAKLNYKAALQEWTQAGYKVLPEYRVVE 188

Query: 180 RSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            + P +   RF   V +      QG   S +AAEQ AA   
Sbjct: 189 VNQPQNPHERFLAQVWLHEKILGQGKGRSIKAAEQEAAKVA 229


>gi|57236096|gb|AAW48725.1| dicer-2 [Aedes aegypti]
          Length = 1658

 Score = 86.1 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             Y  +E  +GY F +R+ L +ALTH+S  ++    SY++LEFLGD +L  LIS  +F   
Sbjct: 1400 NYRRIEGILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQN 1459

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
             +   G+L+   ++LV+  T + +     L  +
Sbjct: 1460 PTMSPGQLTDLRSALVNNVTLACILVRHGLHLY 1492



 Score = 40.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 2/107 (1%)

Query: 23   LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
            + KALT  S S  +    ER E LGD  L   IS  L  +     EG L+     +VS  
Sbjct: 1175 IIKALTTKSSSDVF--DLERYELLGDAFLKFSISLYLVKYHKEWHEGFLTAVKGQIVSNR 1232

Query: 83   TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
                 A +  L   +++     K+      +     ++  + ++   
Sbjct: 1233 NLVYCAIKYGLPGMLKIHKFDPKNDWQPPLATVPKNIKRTMQSVNHS 1279


>gi|80979095|gb|ABB54750.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 85.7 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 1/124 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHFYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G L+   ++LV+  T + +     L  FI   +    ++ S   + Q      +
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV 1543

Query: 123  IAAL 126
               +
Sbjct: 1544 TNYV 1547



 Score = 38.8 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 3/121 (2%)

Query: 103  LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                    +     DV+E+LIAA+YLD         V     +  L+    +       Q
Sbjct: 1593 FNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTRKVPINHIRQ 1652

Query: 163  EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               H          +          +FT    +       G   +K  A+  AA   L++
Sbjct: 1653 LVEHKHAKPVFSSPIVEGETVMVSCQFTC---MEKTIKVYGFGSNKDQAKLSAAKHALQQ 1709

Query: 223  E 223
             
Sbjct: 1710 L 1710


>gi|147770295|emb|CAN62473.1| hypothetical protein VITISV_005321 [Vitis vinifera]
          Length = 287

 Score = 85.7 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 91/237 (38%), Gaps = 27/237 (11%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              +E+ +GY+F N+ LLE+A TH+S     Q SYERLEF+GD +L LLI+   F  +  
Sbjct: 30  LEGVEQILGYSFTNKRLLEEAYTHASCQK-NQFSYERLEFMGDSVLSLLITKEQFFLYPD 88

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL-----------------RKDVC 108
            + G L+   ++ V  E  ++VA +  L  F+R                        +  
Sbjct: 89  LQPGRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHSNGQ 148

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHA 167
             +  + ADVVES I A+++D    V           +  +     +    TEL E    
Sbjct: 149 IEVPKVLADVVESTIGAVFVDCNCSVDTVXKVFKGLLEPMIVPETLKVHPVTELNERCQK 208

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVLKRE 223
           +           R G        +   I      +G    ++  A   AA   L   
Sbjct: 209 RGLKLEFKDSWQRRGD-------IDFYIEDYFAGRGEYPLRKDIALNRAAKAALNNI 258


>gi|282897359|ref|ZP_06305361.1| Ribonuclease III [Raphidiopsis brookii D9]
 gi|281198011|gb|EFA72905.1| Ribonuclease III [Raphidiopsis brookii D9]
          Length = 240

 Score = 85.7 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 10/222 (4%)

Query: 5   RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  +L +++G +  +     LL+ ALTH ++S     +YE+LEF+GD ++ L+ + +L+ 
Sbjct: 11  QLESLIQKLGLSANSPIKWPLLDLALTHPTVSE--SANYEQLEFVGDAVVRLVAAVVLWE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC----SFMTSIQAD 117
            +     G+ +   + LVS    +++ARE DL  ++ V+     D          + +A 
Sbjct: 69  SYPDCCVGDFAAIRSVLVSDRILARLAREYDLELYLLVAGSATADNVGQESRLADAFEAL 128

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           +    ++   L            +  +Q  L   +    A  +    A  K         
Sbjct: 129 LGALYLSTQNLILIRPWLDPHFQELAEQIRLDPARLNYKAALQEWTQAGYKVLPEYRVVE 188

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             +S   H+  F   V +      QG   S +AAEQ AA   
Sbjct: 189 VNQSQNAHER-FLAQVWLHEKILGQGKGRSIKAAEQEAAKVA 229


>gi|134084339|emb|CAK48679.1| unnamed protein product [Aspergillus niger]
          Length = 1531

 Score = 85.7 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 86/263 (32%), Gaps = 50/263 (19%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65
             +E+++ Y F   +LL  A TH S   ++ +   Y+RLEFLGD ++ ++    LF  F  
Sbjct: 1235 KIEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPD 1294

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-------------- 111
                 L+    ++VS +    +A +L L + ++  S   +   +                
Sbjct: 1295 RDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGA 1354

Query: 112  --------------------------TSIQADVVESLIAALYLDGGI-----EVAGTFVD 140
                                           D+VE+ + A+++D        E       
Sbjct: 1355 VDYWTVTKDPPKVMTPSALRNTANVDGQCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYI 1414

Query: 141  KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISG 197
            K + +       F     T               Y +     P  D         V +  
Sbjct: 1415 KPFFEDMAIYDTFANKHPTTFLHNRLTNEFGCVNYCLKAGEMPSIDGAPAGVLAAVIVHD 1474

Query: 198  LAPAQGMDCSKRAAEQVAAAEVL 220
            +  A+G   S R A+  A+ + L
Sbjct: 1475 VVIAEGTATSGRYAKVKASEKAL 1497



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 13/118 (11%)

Query: 11   KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58
            + + +      L  +A T        H +    +      +YERLEFLGD  L +  S  
Sbjct: 1023 ESLNFTVK-LDLALEAFTKDSDNTDEHRAQQIHVQRGMGRNYERLEFLGDCFLKMATSIA 1081

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            LF       E +  V    L+  +     A + ++  +IR     R    +  T    
Sbjct: 1082 LFTQNPDDDEFDYHVNRMCLICNKNLFNAAVDKEIYKYIRSRGFSRLTDAARHTWYPE 1139


>gi|116196272|ref|XP_001223948.1| hypothetical protein CHGG_04734 [Chaetomium globosum CBS 148.51]
 gi|88180647|gb|EAQ88115.1| hypothetical protein CHGG_04734 [Chaetomium globosum CBS 148.51]
          Length = 1476

 Score = 85.7 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 80/234 (34%), Gaps = 26/234 (11%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  E R+GYAF +  LL  A  H +    +    SY+RLEFLGD +L +     LF+ F 
Sbjct: 1199 ARFEARMGYAFTHPRLLRSAFQHPTYPSVYEKLPSYQRLEFLGDALLDMASVEFLFHRFP 1258

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             A     +       +       A       ++R          S       DVVE+ + 
Sbjct: 1259 GADPQSKTPCNRHATTPSPGDLPAESFARDFWVRC---------SRPPKCLPDVVEAYVG 1309

Query: 125  ALYLDGGIEVAG------TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            A+++D   + A         V  +++   L      +   T L      +        + 
Sbjct: 1310 AVFVDSRYDFARVRAFFADHVRPFFEDMRLYDAFANKHPVTFLAGIMQGRMRCAEWRLLV 1369

Query: 179  FRSGPD---------HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                P            P+    V + GL  A  +  S R  +  AA + ++  
Sbjct: 1370 KDLPPVVGAGAGTELETPQVVCAVRVHGLTLAHAVAASGRYGKIAAAKKAIQVL 1423



 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 38/116 (32%), Gaps = 17/116 (14%)

Query: 1    MSAL--RYSTLE--KRIGYAFANRSLLEKALT--------HS----SISHSYQESYERLE 44
            M  +      LE  K +        L  +A T        H     S       +YERLE
Sbjct: 982  MHRIDSNLVALEACKMLNLNVR-PDLALEAFTKDSDNSGEHDAEQISFQSGMGNNYERLE 1040

Query: 45   FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            FLGD  L +  +  +F       E E  V    L+        A E+ L   IR  
Sbjct: 1041 FLGDCFLKMATTISIFTLIPDKAEFEYHVERMLLICNRNLFNNALEVKLEEHIRSM 1096


>gi|160285502|pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
           Human Dicer
 gi|160285503|pdb|2EB1|B Chain B, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
           Human Dicer
 gi|160285504|pdb|2EB1|C Chain C, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
           Human Dicer
          Length = 200

 Score = 85.7 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 8   FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
               G L+   ++LV+    + +A + D   + +
Sbjct: 68  QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 101


>gi|323126809|gb|ADX24106.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 151

 Score = 85.7 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 1/148 (0%)

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            +V  E+ +  +R     ++I++     K       +I  D+ E+ + AL LD G++   
Sbjct: 1   MIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVDEVR 60

Query: 137 TFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
            F+ +    +  K + +  +D KT LQE   +K  +  +Y+V    GP H  +F V V +
Sbjct: 61  RFLQQVMIPQVEKGNFEKVKDYKTCLQELLQSKGDIAIDYQVISEKGPAHAKQFEVAVFV 120

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    ++G+  SK+ AEQ AA   L + 
Sbjct: 121 NEEVLSKGLGKSKKMAEQDAAKNALVQL 148


>gi|37929016|gb|AAP70345.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929023|gb|AAP70347.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929030|gb|AAP70349.1| ribonuclease III [Ehrlichia ruminantium]
 gi|41814830|gb|AAS10486.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 171

 Score = 85.4 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 91/167 (54%)

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +LFN F    EG L+ +  +LV      ++A+ ++L  FI +S   R    +  ++   +
Sbjct: 1   MLFNIFPYDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGAKNSNNLEN 60

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+YLDGG++ A  F+  +WK  A       +DAKT LQEWA +K    P Y +
Sbjct: 61  ALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHI 120

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             +SGPDH+P FTV V I           +K+ AEQ AA+ +L++  
Sbjct: 121 INKSGPDHNPCFTVEVRIDSHETLHATGHNKKLAEQKAASLMLEKIN 167


>gi|30350181|gb|AAP31489.1| putative ribonuclease III [Western X phytoplasma]
          Length = 228

 Score = 85.4 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 7/207 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLF 60
           +    L KR+     N SL   ALTHSS    +++   + ERLEFLGD ++   +++ L+
Sbjct: 1   MSIKQLFKRLNIKPKNISLFINALTHSSYANENNAKHNNNERLEFLGDSVINFFMASYLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              +   EG ++ +    V  ++    A E+ L  +I +    +K       SI  D  E
Sbjct: 61  -KNNKDDEGVMTKKRAQAVCVDSLLIYAEEIQLKKYIYLGKGEKKRSVHN-YSIVTDAFE 118

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +L  A+YLD G + A     +       K             +           YK+   
Sbjct: 119 ALFGAIYLDLGFKQAQKTFYQVVLPCLNKIINIIDFKTQ--LQELVQTKKQNITYKIISE 176

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207
            G  H+  F   V +      +G   +
Sbjct: 177 KGLAHEKEFVSEVYLGKEWLGKGNGKT 203


>gi|194755862|ref|XP_001960198.1| GF13246 [Drosophila ananassae]
 gi|190621496|gb|EDV37020.1| GF13246 [Drosophila ananassae]
          Length = 1727

 Score = 85.4 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + ++ LE+ +GY F +R  L +ALTH S  ++     Y++LEF+GD IL  LIS  +F +
Sbjct: 1441 INHANLEQNLGYTFKDRGYLLQALTHPSYPTNRITGCYQQLEFIGDAILDFLISGYIFEN 1500

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
                  G+L+   ++LV+  T + +     +  F
Sbjct: 1501 NTKMTPGQLTDLRSALVNNTTLACICVRHKIHLF 1534


>gi|259485853|tpe|CBF83228.1| TPA: Dicer-like protein 2 [Includes Endoribonuclease dcl2(EC
           3.1.26.-);ATP-dependent helicase dcl2(EC 3.6.1.-)]
           [Source:UniProtKB/Swiss-Prot;Acc:P0C5H7] [Aspergillus
           nidulans FGSC A4]
          Length = 1269

 Score = 85.0 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62
           ++   LE  IGY F +++LL +ALTH S  +    +SY+RLEFLGD +L +LI  L+  H
Sbjct: 894 IQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAH 953

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDL 93
               ++GE++   +++V+    + +  +   
Sbjct: 954 HVECQQGEMTKIKHAIVNGHLLAFLCMQFKW 984



 Score = 40.3 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
              F +   +  A+T           Y+R EF GD +L   ++  LF +  +  EG L+ 
Sbjct: 724 DIQFQDLRHVITAITMPLAQAPT--DYQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTE 781

Query: 74  RFNSLVSAETCSQVARELDLASFIR 98
             ++LV     ++ A +  L ++I 
Sbjct: 782 TLHALVQNARLTRAALDQGLDAYII 806


>gi|158706440|sp|P0C5H7|DCL2_EMENI RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
          Length = 1429

 Score = 85.0 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62
            ++   LE  IGY F +++LL +ALTH S  +    +SY+RLEFLGD +L +LI  L+  H
Sbjct: 1054 IQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAH 1113

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDL 93
                ++GE++   +++V+    + +  +   
Sbjct: 1114 HVECQQGEMTKIKHAIVNGHLLAFLCMQFKW 1144



 Score = 40.3 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
              F +   +  A+T           Y+R EF GD +L   ++  LF +  +  EG L+ 
Sbjct: 884 DIQFQDLRHVITAITMPLAQAPT--DYQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTE 941

Query: 74  RFNSLVSAETCSQVARELDLASFIR 98
             ++LV     ++ A +  L ++I 
Sbjct: 942 TLHALVQNARLTRAALDQGLDAYII 966


>gi|67525463|ref|XP_660793.1| hypothetical protein AN3189.2 [Aspergillus nidulans FGSC A4]
 gi|40743766|gb|EAA62953.1| hypothetical protein AN3189.2 [Aspergillus nidulans FGSC A4]
          Length = 1726

 Score = 85.0 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62
            ++   LE  IGY F +++LL +ALTH S  +    +SY+RLEFLGD +L +LI  L+  H
Sbjct: 1351 IQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAH 1410

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDL 93
                ++GE++   +++V+    + +  +   
Sbjct: 1411 HVECQQGEMTKIKHAIVNGHLLAFLCMQFKW 1441



 Score = 40.3 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
               F +   +  A+T           Y+R EF GD +L   ++  LF +  +  EG L+ 
Sbjct: 1181 DIQFQDLRHVITAITMPLAQAPT--DYQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTE 1238

Query: 74   RFNSLVSAETCSQVARELDLASFIR 98
              ++LV     ++ A +  L ++I 
Sbjct: 1239 TLHALVQNARLTRAALDQGLDAYII 1263


>gi|225012041|ref|ZP_03702478.1| Ribonuclease III [Flavobacteria bacterium MS024-2A]
 gi|225003596|gb|EEG41569.1| Ribonuclease III [Flavobacteria bacterium MS024-2A]
          Length = 236

 Score = 85.0 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 84/206 (40%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61
           +  L+K++     N+ L +KA THSS++         ++ERLEFLGD +L  +++  LFN
Sbjct: 8   FIQLQKKLNIRTRNKELYKKAFTHSSVNLKDKEGNTINFERLEFLGDALLSTIVAEYLFN 67

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
               AKEGEL+     +VS    + + +++ L     +SS  +    +   ++   ++ +
Sbjct: 68  FHPEAKEGELTKLRAKIVSRSQLNSIGKQMGLFELADISSHHKTFGENIHGNLIESLIGA 127

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           L      +   +    ++   +    +        +   L      K     E +     
Sbjct: 128 LFIDKGYNKTKDYVLKYMLDPYID--MDELDNMVLSYKSLLIEWSQKQKQELEIRTENDG 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCS 207
           G D +  +T  + +     ++    S
Sbjct: 186 GLDPNINYTCQIYLGKKLISKARGLS 211


>gi|328716581|ref|XP_003245985.1| PREDICTED: endoribonuclease Dcr-1-like isoform 2 [Acyrthosiphon
            pisum]
          Length = 1489

 Score = 85.0 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + + E+ +GY F +RS L +A+TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1357 FESFEQHLGYHFQDRSYLLQAMTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 1416

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                G L+   ++LV+    + +A       + + 
Sbjct: 1417 QHSPGALTDLRSALVNNTIFASLAVRNGFHKYFKH 1451



 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 2/98 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S+L +ALT S+ +     + ERLE +GD  L   I+  L+   D+  EG+LS   +  V
Sbjct: 1124 PSVLLQALTMSNANDGI--NLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQV 1181

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            S     ++ +       +  +     D           
Sbjct: 1182 SNLNLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPH 1219


>gi|190344934|gb|EDK36728.2| hypothetical protein PGUG_00826 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 525

 Score = 85.0 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 81/228 (35%), Gaps = 17/228 (7%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              +  L  +   H S ++S              ERLEFLGD IL  +++ ++F  F +A
Sbjct: 170 TIKDPELAARVFVHKSTTNSKSYLAMSELINSHNERLEFLGDSILNNVVTLIIFEQFPTA 229

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SL++    ++ +        ++ + +           I AD+ E+ I AL
Sbjct: 230 SEGELSRIRASLINNAFLTEFSLAYGFDKKLKSNINEEDLRN-GKQKIYADLFEAYIGAL 288

Query: 127 YLDGGIEVAGTFVDKYWKQR-------ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +D   ++           +           G    +   + + ++              
Sbjct: 289 IIDRKYDITEIKAWLKKLMKDKLGSIARDMKGIKEVNKDAKAELYSLIGTAALHPQYEVI 348

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
             G   + +F +   ++G     G   S + A   AA   L  + + T
Sbjct: 349 VEGDGSEKQFEIACTMNGEILGVGRAPSHKEAGLRAAMHALTNKPVLT 396


>gi|255953957|ref|XP_002567731.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589442|emb|CAP95586.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1495

 Score = 85.0 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 84/244 (34%), Gaps = 34/244 (13%)

Query: 11   KRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +++GY F    LL  A TH S   + +    Y+RLEFLGD +L ++    LF+ F +   
Sbjct: 1217 EKVGYDFKYPRLLRSAFTHPSYPLAWAKVPCYQRLEFLGDALLDMVCVEHLFHRFPNRDP 1276

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----------------- 111
              L+    ++VS +    +A +L L   ++  S+      S                   
Sbjct: 1277 QWLTEHKMAMVSNKFLGALAVKLGLHLHLQHFSNPLMIQNSKYAEEIQLAESESNGEVDY 1336

Query: 112  -------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWK-----QRALKSGKFRRDAKT 159
                        D++E+ + A+++D G +                        F     T
Sbjct: 1337 WLSTSDSPKCLPDMLEAYLGAIFVDSGFDFTVIEAFFQRHILPFFHDMSIYDTFANRHPT 1396

Query: 160  ELQEWAHAKFGVTPEYKVTFRSGPDHD---PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
                          +Y +     P  +   PR    V + G + A  +  S R A+  A+
Sbjct: 1397 TFLHSQMTHNYRCADYCLKSAEVPAVEGETPRVFAAVMVHGQSIASAVASSSRYAKVRAS 1456

Query: 217  AEVL 220
               L
Sbjct: 1457 TRAL 1460



 Score = 46.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 21   SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
                +A T        H S    +     ++YERLE LGD +L +  S  LF       E
Sbjct: 1017 EYALEAFTKDSDNTEEHRSLQIHVQRGMGKNYERLELLGDSVLKMATSISLFAQNPDDDE 1076

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
             +  V    L+  +   + A EL L  +IR     R  
Sbjct: 1077 YDYHVNRMCLICNKNLFKNAIELKLYEYIRSRGFSRHM 1114


>gi|332519389|ref|ZP_08395856.1| ribonuclease III [Lacinutrix algicola 5H-3-7-4]
 gi|332045237|gb|EGI81430.1| ribonuclease III [Lacinutrix algicola 5H-3-7-4]
          Length = 247

 Score = 85.0 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 6/200 (3%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSA 66
           + IGY        + A TH S++    +    +YERLEFLGD +L  +I+  L+    S 
Sbjct: 24  QIIGYKPKTIKHFKTAFTHRSMNIRNSKGNIVNYERLEFLGDAMLSAVIAHHLYEEVPSG 83

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+   + +VS E  +++ R+L L + +       +   +   ++   +V ++    
Sbjct: 84  DEGYLTKMRSKVVSREHLNELGRDLKLINLVESKIPKGQFGDNIHGNLFESLVGAIYLDG 143

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
                 +     V   +       GK        ++         T +Y V   +G D+ 
Sbjct: 144 GFKACEKFIYKRVITPFVDIEQLEGKVISYKSLLIEWCQKE--KKTFDYNVYEDTGNDNI 201

Query: 187 PRFTVVVEISGLAPAQGMDC 206
             F+V + I     ++G   
Sbjct: 202 RHFSVKLSIDNKIVSKGRAT 221


>gi|146423032|ref|XP_001487449.1| hypothetical protein PGUG_00826 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 525

 Score = 84.6 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 80/228 (35%), Gaps = 17/228 (7%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              +  L  +   H S ++S              ERLEFLGD IL  +++ ++F  F +A
Sbjct: 170 TIKDPELAARVFVHKSTTNSKSYLAMSELINSHNERLEFLGDSILNNVVTLIIFEQFPTA 229

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS     L++    ++ +        ++ + +           I AD+ E+ I AL
Sbjct: 230 SEGELSRIRALLINNAFLTEFSLAYGFDKKLKSNINEEDLRN-GKQKIYADLFEAYIGAL 288

Query: 127 YLDGGIEVAGTFVDKYWKQR-------ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +D   ++           +           G    +   + + ++              
Sbjct: 289 IIDRKYDITEIKAWLKKLMKDKLGSIARDMKGIKEVNKDAKAELYSLIGTAALHPQYEVI 348

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
             G   + +F +   ++G     G   S + A   AA   L  + + T
Sbjct: 349 VEGDGSEKQFEIACTMNGEILGVGRAPSHKEAGLRAAMHALTNKPVLT 396


>gi|209525933|ref|ZP_03274467.1| Ribonuclease III [Arthrospira maxima CS-328]
 gi|209493610|gb|EDZ93931.1| Ribonuclease III [Arthrospira maxima CS-328]
          Length = 395

 Score = 84.6 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 21/212 (9%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61
            S L K+I   F N  LL  ALTHSS  + +    +   E LEFLGD +L  +    L+N
Sbjct: 166 LSKLLKKI--PFQNVDLLNHALTHSSYLYEHPKEVKRDNELLEFLGDSVLNFISGEYLYN 223

Query: 62  HFDS-AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            + S   EG+L+   ++LV  +  ++ A +L L  +IR+         +   S+ ++  E
Sbjct: 224 KYKSVRNEGDLTKLRSALVENKQLAKFAEKLALQQYIRLG-----KGAALNPSLLSNTFE 278

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL---------QEWAHAKFGV 171
           ++I A +LD G++    F+   +     +     +    ++         +        +
Sbjct: 279 AMIGAYFLDSGMKKVQEFLQPLFDSVIAEITSLSQGNSGKVAADSKNRLQEWVQKNIGPI 338

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
           TPEY+     G DH  +FTV V + G    +G
Sbjct: 339 TPEYETIKEEGADHKKQFTVQVMVQGKVYGEG 370


>gi|80979103|gb|ABB54754.1| Dicer-2 [Drosophila simulans]
          Length = 1537

 Score = 84.6 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
                  G L+   ++LV+  T + +     L  F
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1519


>gi|195997771|ref|XP_002108754.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens]
 gi|190589530|gb|EDV29552.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens]
          Length = 1018

 Score = 84.6 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 2/118 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
               LEK IGY+F N+  + +ALTHSS  H     ES ++LEFLGD IL  +I+   FN 
Sbjct: 813 NLERLEKVIGYSFQNKLFMIRALTHSSYHHHDIAIESNQKLEFLGDTILQYIIARHFFNS 872

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              AK  +L     ++V+ +  + +   + ++ ++   S            I      
Sbjct: 873 HPDAKPAKLHDFQEAIVNNKCLAVIGIAIGVSKYVFQESPDLFRDIDQFAKIITCDYM 930



 Score = 38.0 bits (86), Expect = 0.94,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L +ALT          S ERLEFLGD  L  +I+  LF       EG+L+     +V  +
Sbjct: 627 LLEALT--LAEAEDDISLERLEFLGDSFLKFIIAANLFISHPKYHEGQLTNELTKIVRND 684

Query: 83  TCSQVARELDLASFIR 98
              ++ +   +  +I 
Sbjct: 685 NLLKLGKSTPICEYII 700


>gi|167046024|gb|ABZ10543.1| dicer-like protein C [Trichoplax adhaerens]
          Length = 358

 Score = 84.6 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 2/118 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
               LEK IGY+F N+  + +ALTHSS  H     ES ++LEFLGD IL  +I+   FN 
Sbjct: 187 NLERLEKVIGYSFQNKLFMIRALTHSSYHHHDIAIESNQKLEFLGDTILQYIIARHFFNS 246

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              AK  +L     ++V+ +  + +   + ++ ++   S            I      
Sbjct: 247 HPDAKPAKLHDFQEAIVNNKCLAVIGIAIGVSKYVFQESPDLFRDIDQFAKIITCDYM 304



 Score = 38.0 bits (86), Expect = 0.94,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
          L +ALT          S ERLEFLGD  L  +I+  LF       EG+L+     +V  +
Sbjct: 1  LLEALT--LAEAEDDISLERLEFLGDSFLKFIIAANLFISHPKYHEGQLTNELTKIVRND 58

Query: 83 TCSQVARELDLASFIR 98
             ++ +   +  +I 
Sbjct: 59 NLLKLGKSTPICEYII 74


>gi|123967024|ref|YP_001012105.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9515]
 gi|123201390|gb|ABM72998.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9515]
          Length = 249

 Score = 84.2 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 5/204 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
             +ALTHSS       +YE+LEF GD +L L  S  +   + +   G  S   + LVS E
Sbjct: 42  FNEALTHSSADKIV--NYEKLEFFGDAVLRLSASDFIERKYKNMSVGNRSELRSQLVSDE 99

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
             +++ +++ +   I        D  S  T I       + A       I     ++D +
Sbjct: 100 WLTELGKKIFIEKVIVKGPKAIGDENSKDTIIAETSEALIGAIYKCFNSIHEVNIWLDNF 159

Query: 143 WKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLA 199
           W++ A        + +AK+ LQEW        P YK+   S    DP RF+  + ++G  
Sbjct: 160 WEKDAELYLKAPHKYNAKSALQEWCQKHGFDLPIYKIYEVSSSHGDPKRFSCDIYLNGSK 219

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
            A     S + AE+ AA  ++++ 
Sbjct: 220 EASSFGNSHKKAEKNAATILIEKI 243


>gi|294463153|gb|ADE77113.1| unknown [Picea sitchensis]
          Length = 173

 Score = 84.2 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            S LE  + Y F ++SLL++A+THSS  ++  ESYE+LEF+GD +LG L++  L+  +  
Sbjct: 19  LSELEDILKYKFKSKSLLKEAITHSS--NNNTESYEKLEFVGDSVLGYLVTKHLYCAYPK 76

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             +G L++  +  V  E  ++V  +     ++ +++   + +         D  +S    
Sbjct: 77  LYQGTLTLLRSRNVDTEKFARVCVKHKFHQYLLLNAPALQQIIEDFVKDIEDESKSFRCG 136


>gi|238881386|gb|EEQ45024.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 611

 Score = 84.2 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 22/227 (9%)

Query: 17  FANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             N  L E+   H S  ++ Q            ERLEF GD IL  L + ++F  F  + 
Sbjct: 242 INNPKLFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDST 301

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS   + LVS +T  ++A +      +R          +    I ADV E+ I AL 
Sbjct: 302 EGDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDVLK-TGDKKIFADVFEAYIGALA 360

Query: 128 LDGGI------EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           ++ G       E           +  ++  +   D + + + +             T + 
Sbjct: 361 MERGFDLEDVKEWLAKVYAPLIHELKIEYIEEPIDREAKSKLYGLIGQDDLHPVYNTLQM 420

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA------EVLKR 222
           G     +F V   I+G    +G   + + A   AA       EVLK+
Sbjct: 421 GDGIHNKFIVQCTINGEELGRGTANNLKEAGLRAAMAGLNNNEVLKK 467



 Score = 38.4 bits (87), Expect = 0.81,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           F VV+ + G+   +  D SK+ A   AA  +L+ 
Sbjct: 560 FKVVLCVRGITICEATDPSKKKAMARAAQTLLEN 593


>gi|37929739|gb|AAP70361.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 156

 Score = 84.2 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 86/155 (55%)

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
            +  +LV      +VA+ ++L +FI +S   R    +  +S   + +E+LI A+YLDGG+
Sbjct: 1   KKKTALVCGTKLVEVAQSINLGTFIIMSDGERTCGGANNSSNLENALEALIGAIYLDGGL 60

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           + A  F+  +WK  A       +DAKT LQEWA +K  + P Y +  +SGPDH+P FTV 
Sbjct: 61  KAAKNFIFLFWKNSAKHMKVPPQDAKTILQEWAQSKGLLAPSYHIVNKSGPDHNPIFTVE 120

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           V +      Q    +K+ AEQ AA+ +L++    T
Sbjct: 121 VRMHSYETLQATGNNKKIAEQKAASLMLEKINYKT 155


>gi|68477301|ref|XP_717277.1| probable ribonuclease III [Candida albicans SC5314]
 gi|46438981|gb|EAK98304.1| probable ribonuclease III [Candida albicans SC5314]
          Length = 611

 Score = 83.8 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 22/227 (9%)

Query: 17  FANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             +  L E+   H S  ++ Q            ERLEF GD IL  L + ++F  F  + 
Sbjct: 242 INDPKLFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDST 301

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS   + LVS +T  ++A +      +R          +    I ADV E+ I AL 
Sbjct: 302 EGDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDVLK-TGDKKIFADVFEAYIGALA 360

Query: 128 LDGGI------EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           ++ G       E           +  ++  +   D + + + +             T + 
Sbjct: 361 MERGFDLEDVKEWLAKVYAPLIHELKIEYIEEPIDREAKSKLYGLIGQDDLHPVYNTLQM 420

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA------EVLKR 222
           G     +F V   I+G    +G   + + A   AA       EVLK+
Sbjct: 421 GDGIHNKFIVQCTINGEELGRGTANNLKEAGLRAAMAGLNNNEVLKK 467



 Score = 38.4 bits (87), Expect = 0.81,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           F VV+ + G+   +  D SK+ A   AA  +L+ 
Sbjct: 560 FKVVLCVRGITICEATDPSKKKAMARAAQTLLEN 593


>gi|68477460|ref|XP_717201.1| probable ribonuclease III [Candida albicans SC5314]
 gi|46438903|gb|EAK98227.1| probable ribonuclease III [Candida albicans SC5314]
          Length = 611

 Score = 83.8 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 22/227 (9%)

Query: 17  FANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             +  L E+   H S  ++ Q            ERLEF GD IL  L + ++F  F  + 
Sbjct: 242 INDPKLFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDST 301

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS   + LVS +T  ++A +      +R          +    I ADV E+ I AL 
Sbjct: 302 EGDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDVLK-TGDKKIFADVFEAYIGALA 360

Query: 128 LDGGI------EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           ++ G       E           +  ++  +   D + + + +             T + 
Sbjct: 361 MERGFDLEDVKEWLAKVYAPLIHELKIEYIEEPIDREAKSKLYGLIGQDDLHPVYNTLQM 420

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA------EVLKR 222
           G     +F V   I+G    +G   + + A   AA       EVLK+
Sbjct: 421 GDGIHNKFIVQCTINGEELGRGTANNLKEAGLRAAMAGLNNNEVLKK 467


>gi|194880776|ref|XP_001974538.1| GG21041 [Drosophila erecta]
 gi|190657725|gb|EDV54938.1| GG21041 [Drosophila erecta]
          Length = 1729

 Score = 83.8 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 1/121 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1439 INHYHLENNLGYTFKDRGYLLQALTHPSYPTNRITGCYQELEFIGDAILDFLISVYIFEN 1498

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              +   G L+   ++LV+  T + +     L  FI   + +  +  S     Q      +
Sbjct: 1499 NTNMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAMLAESISKFVHFQESQRHRV 1558

Query: 123  I 123
             
Sbjct: 1559 T 1559


>gi|170076696|ref|YP_001733334.1| ribonuclease III [Synechococcus sp. PCC 7002]
 gi|169884365|gb|ACA98078.1| ribonuclease III [Synechococcus sp. PCC 7002]
          Length = 239

 Score = 83.8 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 6/208 (2%)

Query: 6   YSTLEKRIG---YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              L  R+G   Y      LL+ ALTH SIS    ++YE+LEF+GD ++ L  S +L+  
Sbjct: 10  LRRLIDRLGLPDYHGMRWDLLDLALTHPSIS--PDKNYEQLEFIGDAVVRLAASEVLYAE 67

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           + +   GE +   + LVS  T ++ A   +L  ++             + +   + +   
Sbjct: 68  YPAEPVGEFAAIRSILVSDRTLAEFAHRYNLKKYLSYHGHYHGAGEISLLADAFEAMLGA 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +     D  +           K   +K    R + K  LQ W+  ++   P Y+VT    
Sbjct: 128 LFLTTNDLSLVHPWLDEHLRHKAAEIKQDPARENYKDALQTWSQGEYQKLPTYQVTENPE 187

Query: 183 PDHDP-RFTVVVEISGLAPAQGMDCSKR 209
             H+  RF   V++      +G+  SK+
Sbjct: 188 FRHEEERFLAEVKLGDTLLGKGVGRSKK 215


>gi|18158946|pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.10
           Angstrom Resolution
 gi|18158947|pdb|1JFZ|B Chain B, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.10
           Angstrom Resolution
 gi|18158948|pdb|1JFZ|C Chain C, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.10
           Angstrom Resolution
 gi|18158949|pdb|1JFZ|D Chain D, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.10
           Angstrom Resolution
 gi|47168733|pdb|1RC5|A Chain A, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.30
           Angstrom Resolution
 gi|47168734|pdb|1RC5|B Chain B, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.30
           Angstrom Resolution
 gi|47168735|pdb|1RC5|C Chain C, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.30
           Angstrom Resolution
 gi|47168736|pdb|1RC5|D Chain D, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.30
           Angstrom Resolution
          Length = 154

 Score = 83.8 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 8/137 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LEK++GY F ++SLLEKALTH S S   +E YE LEFLGD ++   I  LL  +  +
Sbjct: 5   LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 62

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG LS     L+S E  + +A++L+L  FIR+             +I  DV E+L AA
Sbjct: 63  KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFEALWAA 116

Query: 126 LYLDGGIEVAGTFVDKY 142
           +Y+D G +   T    Y
Sbjct: 117 VYIDSGRDANFTRELFY 133


>gi|18158935|pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From
           Aquifex Aeolicus At 2.15 Angstrom Resolution
 gi|18158936|pdb|1I4S|B Chain B, Crystal Structure Of Rnase Iii Endonuclease Domain From
           Aquifex Aeolicus At 2.15 Angstrom Resolution
          Length = 147

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 8/137 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LEK++GY F ++SLLEKALTH S S   +E YE LEFLGD ++   I  LL  +  +
Sbjct: 4   LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG LS     L+S E  + +A++L+L  FIR+             +I  DV E+L AA
Sbjct: 62  KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFEALWAA 115

Query: 126 LYLDGGIEVAGTFVDKY 142
           +Y+D G +   T    Y
Sbjct: 116 VYIDSGRDANFTRELFY 132


>gi|126134051|ref|XP_001383550.1| hypothetical protein PICST_30953 [Scheffersomyces stipitis CBS
           6054]
 gi|126095699|gb|ABN65521.1| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 566

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 87/220 (39%), Gaps = 15/220 (6%)

Query: 17  FANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             +++L E+   H S+ +               ERLEFLGD +L  L++ ++++ F SA 
Sbjct: 208 IKDQTLYERVFVHKSVVNGKTYLDQNDLINSHNERLEFLGDSVLNNLVTLIIYDKFPSAS 267

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+L+   + L+   T +Q + E      ++  +D      +    + AD+ E+ I AL 
Sbjct: 268 EGKLTKMRSQLIDNHTLTQFSFEYGFDKRLKTKTDEEILK-TGDQKVYADIFEAYIGALS 326

Query: 128 LDGG---IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           ++ G    E+       Y  +       F +++  +  +        T      +    +
Sbjct: 327 VERGLDLREIKDWLEKLYAPKLEAFKVNFLQESVNKEAKSELYSIVGTASSHPLYVVVEE 386

Query: 185 HDPR--FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +    F V   +      +    S++ A   AA + LK 
Sbjct: 387 GNGSHDFVVECRMGNDVLGRAKAPSQKEAGLRAAMDALKN 426


>gi|242059623|ref|XP_002458957.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor]
 gi|241930932|gb|EES04077.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor]
          Length = 1651

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 83/236 (35%), Gaps = 21/236 (8%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LE ++GY F  + LL +ALTH S         Y+RLEFLGD +L +LI+  LF       
Sbjct: 1245 LEAKLGYTFQVKGLLIEALTHPSQQESGATYCYQRLEFLGDAVLDILITRHLFLSHKDTD 1304

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
            EGEL+   ++ V+ E  +QVA + +L  F++ SS   +D  +   +          + L 
Sbjct: 1305 EGELTDLRSASVNNENFAQVAVKHNLHQFLQHSSGFLQDQITEYVNSLEGSSMDRTSLLS 1364

Query: 128  LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE-----LQEWAHAKFGVTPEYKVTFRSG 182
                               A+                 L         +           
Sbjct: 1365 SGPSRGPKVLGDIVESIAGAILIDSKLDLDLVWRVFKPLLSPIVTPENLELPPFRELNEW 1424

Query: 183  PDHDPRFT-VVVEISGLAPA--------------QGMDCSKRAAEQVAAAEVLKRE 223
             D +  F  +  E  G                  QG   +K  A+  AA+ +L+  
Sbjct: 1425 CDKNGYFIGIKCENRGDKTTAILSLQLKDLLLVRQGCGKNKIDAKAHAASLLLRDL 1480


>gi|313236326|emb|CBY11646.1| unnamed protein product [Oikopleura dioica]
          Length = 1519

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 2/114 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHF- 63
            Y   EK+IGY F N+  L ++LTH+S  ++     Y+RLEFLGD +L  LI+  LF+H  
Sbjct: 1249 YGEFEKKIGYTFKNKGYLLQSLTHASYQYNQVTNCYQRLEFLGDAVLDFLITRHLFDHPT 1308

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
                 GEL+    +LV+    + +A + D   ++   +    +V          
Sbjct: 1309 KRFSPGELTDLRAALVNNNIFAALAVKFDFHKYLYALTPDLHNVIRDYVLYCQT 1362


>gi|188593364|emb|CAO78751.1| Oikopleura cytoplasmic RNAse III enzyme Dicer [Oikopleura dioica]
          Length = 1814

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 2/114 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHF- 63
            Y   EK+IGY F N+  L ++LTH+S  ++     Y+RLEFLGD +L  LI+  LF+H  
Sbjct: 1544 YGEFEKKIGYTFKNKGYLLQSLTHASYQYNQVTNCYQRLEFLGDAVLDFLITRHLFDHPT 1603

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
                 GEL+    +LV+    + +A + D   ++   +    +V          
Sbjct: 1604 KRFSPGELTDLRAALVNNNIFAALAVKFDFHKYLYALTPDLHNVIRDYVLYCQT 1657


>gi|168027292|ref|XP_001766164.1| dsRNA-specific nuclease dicer and related ribonuclease
            [Physcomitrella patens subsp. patens]
 gi|162682596|gb|EDQ69013.1| dsRNA-specific nuclease dicer and related ribonuclease
            [Physcomitrella patens subsp. patens]
          Length = 1460

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 1/113 (0%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
                 EKRIGY F N+ L  +ALTH S +       Y+RLEFLGD +L  L++  LF   
Sbjct: 1223 DLKAFEKRIGYTFKNKYLPLEALTHFSNMVGDQIRCYQRLEFLGDAVLDFLLTRHLFTSH 1282

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++  G L+    + V+ E  ++VA +  L  ++R  S               
Sbjct: 1283 PTSTPGLLTSLRTASVNNERFARVAVKHRLHCYLRHGSGRLLHQIEEFVKSFE 1335


>gi|291572035|dbj|BAI94307.1| ribonuclease III [Arthrospira platensis NIES-39]
          Length = 246

 Score = 83.4 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 7/210 (3%)

Query: 5   RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   L +R+G +  ++    LL+ ALTH S+S   Q++YE+LEF+GD ++ L  S LLF 
Sbjct: 15  QLEKLIERLGLSPQHKIAWQLLDLALTHPSVSS--QDNYEQLEFVGDSVVRLAASELLFE 72

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--LRKDVCSFMTSIQADVV 119
            + +A  GE +   + LVS    ++++    L  ++ V       +       +   + V
Sbjct: 73  TYPNAPVGEFAAVRSILVSDRILAEISESYGLGRYLLVGGSATRDRLGEESRLADCFEAV 132

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            + +        +           +   + +   R++ K  LQEW  + + + P+YKV  
Sbjct: 133 LAALYLSTNTLELIRPWLDPHLLERATEIFNDPARQNYKAALQEWTQSCYKILPQYKVNE 192

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                 + RFT  V +       G   + +
Sbjct: 193 TGYAGDEGRFTASVWLRDEQLGTGTGKTIK 222


>gi|88808139|ref|ZP_01123650.1| putative ribonuclease III [Synechococcus sp. WH 7805]
 gi|88788178|gb|EAR19334.1| putative ribonuclease III [Synechococcus sp. WH 7805]
          Length = 269

 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 78/206 (37%), Gaps = 8/206 (3%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L +ALTH+S        +E+LEFLGD +L L  S  +   +     GE S     LVS  
Sbjct: 61  LNEALTHTS--SGLHPHHEQLEFLGDAVLRLAASEFIAVAYPQMPVGERSSLRAQLVSDR 118

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTFV 139
             +Q+   + +  + R+    +        +     +   +                   
Sbjct: 119 WLTQLGEAITIEEWWRI--GPKASGDPTAAATIRAELSEALIGAMYRIAGLQAVQTWLTP 176

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGL 198
                  A+ +   R ++K+ LQEW+  +    P Y  +  S    DP RF   V +   
Sbjct: 177 HWQRSAEAVLADPHRGNSKSALQEWSQGRGLGLPRYACSEVSQRHGDPKRFQASVTLPPD 236

Query: 199 APAQGMDCSKRAAEQVAAAEVLKREG 224
             A G   S+R AEQ AA  ++ +  
Sbjct: 237 LAADGWGGSRREAEQQAAEALMAQLK 262


>gi|146149942|gb|ABQ02405.1| dicer [Schistosoma mansoni]
          Length = 2641

 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 19/113 (16%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISH-------------------SYQESYERLEF 45
            R+  LE  + Y F + SLL +A TH S                      +  + Y+RLEF
Sbjct: 2194 RFDELESSLNYTFKDPSLLIQAFTHPSYHQLRVLSTSNNLSDQSNLMFSTDLDCYQRLEF 2253

Query: 46   LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            LGD +L  +I+  L+        G L+   ++LV+    + +A  + L  + R
Sbjct: 2254 LGDAVLDYVITRFLYEDSKQHSPGVLTDLRSALVNNNIFAALAVRIGLHKYFR 2306



 Score = 37.6 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 52/196 (26%), Gaps = 10/196 (5%)

Query: 29   HSSISHSYQESYERLEFLGDRI-LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            H+SI +  +E  E      D   L  L       +  S  + +   +  S       +  
Sbjct: 2433 HASILNHAKEC-ESKWQEKDTQELTGLFVQNSSENQSSKPQHQTYEQHLSKSGKSNNANN 2491

Query: 88   ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147
                +             ++   ++ I   +  ++               +     +   
Sbjct: 2492 TIPTNTGHLTTNRLSDDVEIPKALSDIFESLAGAIFLDSNFSLDTVWQIFYPIMKERIER 2551

Query: 148  LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +   +   +  L+              V        D R +V   + G     G+  +
Sbjct: 2552 YTACIPKSPVRQLLELEPEGTKFERARRMV--------DGRISVCAHVLGKGRFYGVGRN 2603

Query: 208  KRAAEQVAAAEVLKRE 223
             R A+ +AA   L+  
Sbjct: 2604 YRLAKSLAAKRALRVL 2619



 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             + + +ALT  S S+ +  + ER+E +GD  L  +++  L+  +  A EG+LS   + +V
Sbjct: 1944 PTTILQALT-MSCSNDFI-NLERMETIGDSFLKFVVTVHLYLTYPEAHEGKLSHLRSRIV 2001

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVC 108
                  ++ +  DL + +        +  
Sbjct: 2002 CNSNLYRLGKAKDLQNRMIGCKFEPHENW 2030


>gi|37928957|gb|AAP70337.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37928988|gb|AAP70339.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929002|gb|AAP70341.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929010|gb|AAP70343.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 171

 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 91/167 (54%)

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +LFN F    EG L+ +  +LV      ++A+ ++L  FI +S   R    +  ++   +
Sbjct: 1   MLFNIFPYDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLEN 60

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+YLDGG++ A  F+  +WK  A       +DAKT LQEWA +K    P Y +
Sbjct: 61  ALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHI 120

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             +SGPDH+P FTV V I+          +K+ AEQ AA+ +L +  
Sbjct: 121 INKSGPDHNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAKIN 167


>gi|189205613|ref|XP_001939141.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187975234|gb|EDU41860.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1572

 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 75/253 (29%), Gaps = 37/253 (14%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             +E +  Y F    LL  A  H S  +      +Y+RLEFLGD +L +   T L+  +  
Sbjct: 1283 KIEAKHPYHFKYPRLLRSAFAHPSYPYIYENIPNYQRLEFLGDSLLDMAFITHLYYKYPD 1342

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-------------- 111
                 L+     +VS +    V  +L    +I+ ++ +                      
Sbjct: 1343 KDPQWLTEHKTPMVSNKFLGAVCVKLGWHVYIKQNTAILTSQIRDYVLEAQEAEREASSA 1402

Query: 112  ----------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-------- 153
                          ADV+E+  AA+++D   + +          +               
Sbjct: 1403 VDYWVTISEPPKCLADVIEAYTAAIFVDAEFDFSVVQDFFNMHLKPFFEDMTLEAYENFA 1462

Query: 154  RRDAKTELQEWAHAKFGVTPEYK---VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                 T L       FG               P        ++ I G      +  S R 
Sbjct: 1463 SNHPTTRLSRILSINFGCNDWRMGALEMETLIPGKGKAIAAMIMIHGKVHFYSLGQSGRY 1522

Query: 211  AEQVAAAEVLKRE 223
            A    +   L++ 
Sbjct: 1523 ARVRVSHAALEKL 1535



 Score = 43.4 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 12/76 (15%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             +L  +ALT  S                   +YERLEFLGD  L +  S  +F       
Sbjct: 1065 PALALEALTKDSENSEEHGEEKINFKSGMGPNYERLEFLGDCFLKMATSLSVFVQQPDEN 1124

Query: 68   EGELSVRFNSLVSAET 83
            E E  VR   ++  + 
Sbjct: 1125 EFEFHVRRMEMLCNKN 1140


>gi|120437705|ref|YP_863391.1| ribonuclease III [Gramella forsetii KT0803]
 gi|117579855|emb|CAL68324.1| ribonuclease III [Gramella forsetii KT0803]
          Length = 243

 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 80/205 (39%), Gaps = 6/205 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61
           ++ L + +G+   +    +KA TH S++         ++ER+EFLGD +L  ++++ LF 
Sbjct: 19  FNILTQILGFKPKSILHYKKAFTHRSLNRRDEDGNAINFERMEFLGDAMLSAVVASHLFK 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EG L+   + +VS +  +++ ++L L   ++ +    +   +   ++   +V +
Sbjct: 79  AVPGGNEGYLTKMRSKVVSRKHLNELGKDLGLIEHVQTNIPKDQFGVNIHGNLFEALVGA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +                V   +       GK        ++           ++ V   +
Sbjct: 139 IYLDRGYKHCKRFIYERVINPYVDIEQLEGKVISYKSLVIEWCQKE--KKEFDFNVYEDT 196

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDC 206
           G D    F V + I G   A+    
Sbjct: 197 GNDELKHFAVKLRIGGRVVAKARAT 221


>gi|121807817|sp|Q2VF19|DCL1_CRYPA RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease DCL-1; Includes: RecName:
            Full=ATP-dependent helicase DCL-1
 gi|77632774|gb|ABB00356.1| dicer-like protein 1 [Cryphonectria parasitica]
          Length = 1548

 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 70/268 (26%), Gaps = 51/268 (19%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              + +  GY F +  +L  A  H S          Y+RLEFLGD +  +     LF+   
Sbjct: 1249 QKIHEATGYQFKHPRVLRSAFRHPSRPYVFDKVPHYQRLEFLGDALFDMACVDYLFHIAP 1308

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102
                  L+    ++VS +    +A  L    FI                           
Sbjct: 1309 DEGPQWLTEHKMAMVSNQFLGCLAVSLGFHKFILHHHASIGSQIHEYVTEITEARRAAED 1368

Query: 103  --------------LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK---- 144
                                        DV+E+ + A+++D   + +      +      
Sbjct: 1369 AAEAAGKPRSAYSRDYWVEAPQPPKCIPDVLEAYVGAIFVDSKYDYSVVQQFFHAHVLPF 1428

Query: 145  ---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD------HDPRFTVVVEI 195
                R   +   +       Q                     D         +    + +
Sbjct: 1429 FASMRMYDTFANKHPVTFFTQYVFETFGCHAYGLHAEEMPVKDDTGLVTGKTQVVAGILL 1488

Query: 196  SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             G      +  S R A+  AA + L + 
Sbjct: 1489 HGQVVEGAVRDSGRYAKIAAARKALDKL 1516



 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 19/112 (16%)

Query: 19   NRSLLEKALTHSS-------------------ISHSYQESYERLEFLGDRILGLLISTLL 59
            +  L  +ALT  S                          +YERLE LGD  L +  +  +
Sbjct: 1043 HPDLALEALTKDSDNQGEDERMDSIQAFEPVNFQPGMGANYERLELLGDSFLKMATTIAV 1102

Query: 60   FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
            F    +  E +       ++  +    VA+  DL     + S   +    + 
Sbjct: 1103 FTLIPNKDEFDYHCERMVMICNQNLFGVAKSDDLKLHEYIRSKSFERGTWYP 1154


>gi|271969197|ref|YP_003343393.1| ribonuclease III [Streptosporangium roseum DSM 43021]
 gi|270512372|gb|ACZ90650.1| Ribonuclease III [Streptosporangium roseum DSM 43021]
          Length = 243

 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 4/206 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
             LE+ +     + ++LE+A+TH S ++      + ERLEFLGD +LGL+++  L+ +  
Sbjct: 15  DELERVLSVRL-DVAILERAMTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRNHP 73

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    ++V+    + VAR L L  F+R+            +SI AD +E+LI 
Sbjct: 74  DLPEGQLAKLRAAVVNMRALADVARTLGLGRFLRLGRGEEGTGGRDKSSILADTLEALIG 133

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ++Y++ G++ A   V   +     +S             +   A   +         SGP
Sbjct: 134 SVYVNRGLDEAFRVVHLLFDPLITRSASLGAGLDWKTSLQELTASEALGVPEYHVEESGP 193

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
           DH   FT VV + G     G   SK+
Sbjct: 194 DHAKSFTAVVLLGGEEYGSGSGRSKK 219


>gi|291000766|ref|XP_002682950.1| hypothetical protein NAEGRDRAFT_62031 [Naegleria gruberi]
 gi|284096578|gb|EFC50206.1| hypothetical protein NAEGRDRAFT_62031 [Naegleria gruberi]
          Length = 1386

 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 88/268 (32%), Gaps = 49/268 (18%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG---LLISTLL 59
             +    L +++ + F N  LL +A  H S +     +YERLEFLGD +LG          
Sbjct: 1103 KIDLYKLTEKLNFQFENSGLLLEAFIHPSYN--GVFNYERLEFLGDSVLGLIVTSKIFEK 1160

Query: 60   FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL------RKDVCSFMTS 113
            F+   S   G +S     +V  +  + +  E  L ++I  S +                 
Sbjct: 1161 FHKNSSFSLGMMSKLREKIVMNKNFANLCIENQLQNYIIFSGNHIAQQVVHSKDDGEYVK 1220

Query: 114  IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE---------- 163
            + +DV ESL  AL++D   ++    +            +   +A+ E+            
Sbjct: 1221 MLSDVFESLAGALFVDSHYDLDTVKLIYDEFLWKNFMDEIFTEAENEVSMNSNVTEIVGN 1280

Query: 164  -------------------------WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
                                            +    K         +P F +V + S  
Sbjct: 1281 PNNPIVTFISTNITRDSSSVLNELLQQFVFNRLDKSEKWYMEESKKPNPPFNMVADFSIT 1340

Query: 199  AP---AQGMDCSKRAAEQVAAAEVLKRE 223
                   G   S + A++ A+AE L+  
Sbjct: 1341 IFEKTFTGRGPSIKLAKKQASAECLQYL 1368



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 21   SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
             LLE+ALT          +YE+LEF GD IL  ++S  +++ F     G LS   +  VS
Sbjct: 934  ELLEEALTAK--RSQVGANYEKLEFFGDSILKYIVSKHIYHEFPLYSSGSLSQLQHKFVS 991

Query: 81   AETCSQVARELDLASFIRVSS 101
                + VAR   L  FI    
Sbjct: 992  NYFLASVARNTRLPLFIITEP 1012


>gi|37929038|gb|AAP70351.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929053|gb|AAP70353.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929097|gb|AAP70355.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929705|gb|AAP70357.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929713|gb|AAP70359.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 171

 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 90/167 (53%)

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +LFN F    EG L+ +  +LV      ++A+ ++L  FI +S   R    +  ++   +
Sbjct: 1   MLFNIFPYDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLEN 60

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+YLDGG+  A  F+  +WK  A       +DAKT LQEWA +K    P Y +
Sbjct: 61  ALEALIGAIYLDGGLNAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHI 120

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             +SGPDH+P FTV V I+          +K+ AEQ AA+ +L +  
Sbjct: 121 INKSGPDHNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAKIN 167


>gi|156554976|ref|XP_001602524.1| PREDICTED: similar to dicer-1 [Nasonia vitripennis]
          Length = 1563

 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             T+E+R+GY F NR+ L +A TH S   +    SY+RLEFLGD +L  L++  ++    +
Sbjct: 1361 QTMEERLGYKFRNRAFLLQAFTHPSYMPNRQTASYQRLEFLGDAVLDFLLTIHIYETCGN 1420

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLA 94
               GEL+   ++LV+  T + +A    L 
Sbjct: 1421 LSPGELTDLRSALVNNITFACLAVRYGLH 1449


>gi|297804712|ref|XP_002870240.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316076|gb|EFH46499.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 214

 Score = 83.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 45/99 (45%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           L   +LEK + Y F ++ LL +A T +S      +SYE LE LGD IL + I       +
Sbjct: 28  LEIESLEKILNYKFKDKRLLVQAFTDASYVDDKCDSYEILELLGDSILNMSIIDEFIKLY 87

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
                G L+      V  E  ++VA +  L  ++R    
Sbjct: 88  PKESPGPLTKLRAVNVDTEKLARVAVKHQLYRYLRHKKP 126


>gi|63054443|ref|NP_588215.2| dicer [Schizosaccharomyces pombe 972h-]
 gi|1351642|sp|Q09884|DCR1_SCHPO RecName: Full=Protein Dicer; AltName: Full=Cell cycle control protein
            dcr1; AltName: Full=RNA interference pathway protein
            dcr1; Includes: RecName: Full=Endoribonuclease dcr1;
            Includes: RecName: Full=ATP-dependent helicase dcr1
 gi|157310516|emb|CAB41233.2| dicer [Schizosaccharomyces pombe]
          Length = 1374

 Score = 82.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 2/131 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +E+ IGY+F N+ LL  A  H S+       E+Y++LEFLGD +L  +I   L+  + +A
Sbjct: 1086 IEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYPNA 1145

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
              GEL+   +  V  ++ S +   L+L  +I+  S    D       +     E+     
Sbjct: 1146 TSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASENP 1205

Query: 127  YLDGGIEVAGT 137
            +    I+    
Sbjct: 1206 WFWFEIDSPKF 1216



 Score = 38.4 bits (87), Expect = 0.81,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALT  S        Y+RLEF GD  L L  S  +F  F   +E +L      ++S    
Sbjct: 916 QALT--SAESQLNFDYDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNL 973

Query: 85  SQVARELDLASF 96
            +VA + +L  +
Sbjct: 974 YKVAIDCELPKY 985


>gi|80979131|gb|ABB54768.1| Dicer-2 [Drosophila santomea]
          Length = 1719

 Score = 82.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
                  G L+   ++LV+  T + +     L  F
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1521


>gi|307169891|gb|EFN62400.1| Ribonuclease 3 [Camponotus floridanus]
          Length = 1167

 Score = 82.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 8/165 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  S   ++    S +RLEFLGD +L L++S  L+  
Sbjct: 990  KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1049

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T + V  +L +  +    +   +      T  +AD++E+ 
Sbjct: 1050 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK----TKDRADLLEAF 1105

Query: 123  IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWA 165
            + ALY+D G++    F D  +    +     +   D K++LQ+  
Sbjct: 1106 LGALYVDKGLKYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCC 1150



 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LE+ +GY F NR LL+ ALTH S   ++  +
Sbjct: 759 LDNLERTLGYEFKNRYLLQLALTHPSYRENFGTN 792



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 57/122 (46%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             ERLEFLGD ++  L S  LF+ F   +EG L+    ++V  +  + +A++L L  ++ 
Sbjct: 847 HNERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLSLEEYML 906

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158
            +          +    A+  E+L+ +L+LDGGIEVA     +   +      K   +  
Sbjct: 907 YAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKSEEDLAKVWVNYP 966

Query: 159 TE 160
             
Sbjct: 967 RH 968


>gi|157285011|gb|ABV31245.1| dicer-like 3 [Physcomitrella patens]
          Length = 1641

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 1/113 (0%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
                 EKRIGY F N  L  +ALTH S +       Y+RLEFLGD +L  L++  LF   
Sbjct: 1349 DLKAFEKRIGYTFKNIYLPLEALTHFSNMVGDQIRCYQRLEFLGDAVLDFLLTRHLFTSH 1408

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++  G L+    + V+ E  ++VA +  L  ++R  S               
Sbjct: 1409 PTSTPGLLTSLRTASVNNERFARVAVKHRLHCYLRHGSGRLLHQIEEFVKSFE 1461


>gi|195487840|ref|XP_002092062.1| Dcr-2 [Drosophila yakuba]
 gi|194178163|gb|EDW91774.1| Dcr-2 [Drosophila yakuba]
          Length = 1730

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1439 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1498

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
                  G L+   ++LV+  T + +     L  F
Sbjct: 1499 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1532


>gi|167046036|gb|ABZ10549.1| dicer 1 [Nematostella vectensis]
          Length = 412

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 1/106 (0%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFN 61
           A++    E RIGY F+N+  L +ALTH+S S +   + Y+RLEFLGD +L  L++ L+++
Sbjct: 236 AVQLQGFENRIGYEFSNKLYLIQALTHASYSQNRLTDCYQRLEFLGDALLDFLVTELIYS 295

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
              +   GEL+    +LV+    +++A +      +   S    + 
Sbjct: 296 RNTNLDPGELTDLRQALVNNNIFAEIAVKHGFNKSLFQMSPEWFNK 341



 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +  LL +ALT  S   ++    ERLE LGD  L   +S  L+  +    EG+L+ R  S 
Sbjct: 16  DSELLLQALTTKSAGDAF--DLERLEMLGDAFLKQAVSIFLYCCYKDGDEGKLTKRKTSQ 73

Query: 79  VSAETCSQVARELDLASFIRVSS 101
           +S     +VA  L L  +++ + 
Sbjct: 74  LSNRALYRVACRLGLPEYLQNTQ 96


>gi|80979119|gb|ABB54762.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
                  G L+   ++LV+  T + +     L  F
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1521


>gi|302772092|ref|XP_002969464.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii]
 gi|300162940|gb|EFJ29552.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii]
          Length = 1255

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 95/247 (38%), Gaps = 38/247 (15%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              +LEK + Y F N++LL +A+TH+S +      Y+RLEF+GD +L  L++  LF     
Sbjct: 1008 LLSLEKELCYTFQNKALLLEAITHAS-TPDTVFCYQRLEFIGDAVLDFLVTRHLFTSHPG 1066

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-------------- 111
               G LS   ++ V+ +  ++VA +  L S++R  S   +   +                
Sbjct: 1067 LSPGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGSAELRAKINSFLDVLDRDPECSVMF 1126

Query: 112  -------TSIQADVVESLIAALYLDGGIEVAGTFVD------KYWKQRALKSGKFRRDAK 158
                       AD+VES+  A+ +D G +    +V        +     L     R   +
Sbjct: 1127 GFKALSGPKALADIVESVAGAILVDSGFDFEKLWVVLKRLLSPFVTPATLSFHPVREFHE 1186

Query: 159  TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
                +    ++  +             + RFT  V             +K+ A +  A +
Sbjct: 1187 LCSYKSWEFEWVQSSSGATAEILLKAGEQRFT-EVS---------SIKNKKDARKDVAEK 1236

Query: 219  VLKREGI 225
            +L    +
Sbjct: 1237 LLTMLKV 1243



 Score = 38.4 bits (87), Expect = 0.70,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 42/136 (30%), Gaps = 4/136 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           + +A T  S+      SYE LE LGD +L   ++  L+    +  EGELS R +  +   
Sbjct: 815 ILEART--SLRCQDGFSYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELSDRRSHAICNS 872

Query: 83  TCSQVARELDLASFIR--VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
           T  ++A   DL  ++R                         L   +  +           
Sbjct: 873 TLRKLAVAQDLPMYVRDEPFYPSYWVGAGMYRQRSRKCCCRLDNLVTKESSKPRPTDATY 932

Query: 141 KYWKQRALKSGKFRRD 156
              K            
Sbjct: 933 YVGKTCGQGHRWMCSK 948


>gi|80979129|gb|ABB54767.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
                  G L+   ++LV+  T + +     L  F
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1521


>gi|80979125|gb|ABB54765.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
                  G L+   ++LV+  T + +     L  F
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1521


>gi|80979117|gb|ABB54761.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
                  G L+   ++LV+  T + +     L  F
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1521


>gi|80979127|gb|ABB54766.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
                  G L+   ++LV+  T + +     L  F
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1521


>gi|80979121|gb|ABB54763.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
                  G L+   ++LV+  T + +     L  F
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1521


>gi|302819693|ref|XP_002991516.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii]
 gi|300140718|gb|EFJ07438.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii]
          Length = 1719

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 82/234 (35%), Gaps = 20/234 (8%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              +LE ++ Y F NRSLL +A+TH+S   +    Y+RLEFLGD +L  L+S  LF     
Sbjct: 1461 LESLEHKLQYKFQNRSLLVEAITHAS-QPNCLLCYQRLEFLGDGVLDFLVSRHLFETHPG 1519

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-----TSIQADVVE 120
               G L+   ++ V+ +  +++     L   ++  S                   A   E
Sbjct: 1520 LPPGTLTDLRSAAVNNKWFARLVLRHGLHQHLQHGSVELDCEIRKFVQNVKEKPDASCFE 1579

Query: 121  SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
             L A   L   +E     +         K  +      + L   A  +F           
Sbjct: 1580 DLSAPKVLGDLLESITGAIFVDTNFDLEKLWRVVLPLLSPLVTPATLRFHPVRILMELCA 1639

Query: 181  SGPDHDPRF-------TVVVEISGLAPAQGMDCS----KRAAEQVAAAEVLKRE 223
                    F        V V     +  +    S    +++A+  AA ++L   
Sbjct: 1640 RKGMKVSFFRTEATTTEVRVTFGEESLVE---TSQEKPRKSAKIDAALKMLASL 1690


>gi|2244899|emb|CAB10321.1| UFD1 like protein [Arabidopsis thaliana]
 gi|7268289|emb|CAB78584.1| UFD1 like protein [Arabidopsis thaliana]
          Length = 778

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 46/99 (46%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +   +LEK + Y F ++SLL KA T +S      ESYE LE LGD IL + I       +
Sbjct: 52  MEIESLEKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLY 111

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
                G L+      V  E  ++VA    L S++R    
Sbjct: 112 PKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKP 150


>gi|158706448|sp|Q0UI93|DCL1_PHANO RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease DCL1; Includes: RecName:
            Full=ATP-dependent helicase DCL1
          Length = 1522

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 75/253 (29%), Gaps = 37/253 (14%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             +E +  Y F    LL  A  H S         SY+RLEFLGD +L +     LF  +  
Sbjct: 1224 KIEMKHPYRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYPD 1283

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-------------- 111
                 L+     +VS +    V  +L   + ++ ++ +                      
Sbjct: 1284 KDPQWLTEHKTPMVSNKFLGAVCVKLGWHTHMKQNTAILSSQIRDYVYEVEEAEREANGA 1343

Query: 112  ----------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-------- 153
                          ADV+E+ +AA+++D   +            +               
Sbjct: 1344 VDYWVSVSEPPKCLADVIEAFVAAIFVDSEFDFNVVQKFFDLHLKPFFLDMTLDAYENFA 1403

Query: 154  RRDAKTELQEWAHAKFGVTPEYK---VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                 T L       FG +        T    P        +V I        +  S R 
Sbjct: 1404 SNHPTTRLSRLLSINFGCSEWRMGALETETLIPGKGKAIAAMVMIHDKVHFHSLGQSGRY 1463

Query: 211  AEQVAAAEVLKRE 223
            A   A+   L++ 
Sbjct: 1464 ARVRASHAALEKL 1476



 Score = 41.5 bits (95), Expect = 0.081,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 12/78 (15%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             +L  +ALT  S                   +YERLEFLGD  L +  S  +F       
Sbjct: 1018 PALALEALTKDSDNSEEHGEEKINFKSGMGPNYERLEFLGDCFLKVATSLSVFVQQPEEN 1077

Query: 68   EGELSVRFNSLVSAETCS 85
            E E  VR   ++  +   
Sbjct: 1078 EFEFHVRRMLMLCNQNLM 1095


>gi|80979123|gb|ABB54764.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
                  G L+   ++LV+  T + +     L  F
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1521


>gi|80979133|gb|ABB54769.1| Dicer-2 [Drosophila teissieri]
          Length = 1719

 Score = 82.7 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
                  G L+   ++LV+  T + +     L  F
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFF 1521


>gi|158706455|sp|Q2H0G2|DCL1_CHAGB RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease DCL1; Includes: RecName:
            Full=ATP-dependent helicase DCL1
          Length = 1607

 Score = 82.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 87/282 (30%), Gaps = 65/282 (23%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  E R+GYAF +  LL  A  H +    +    SY+RLEFLGD +L +     LF+ F 
Sbjct: 1273 ARFEARMGYAFTHPRLLRSAFQHPTYPSVYEKLPSYQRLEFLGDALLDMASVEFLFHRFP 1332

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102
             A    L+    ++VS +    +A  L     I   +                       
Sbjct: 1333 GADPQWLTEHKMAMVSNQFLGCLAVYLGFHRAISYCASAIQKEITEYVTEIEDALQSARD 1392

Query: 103  --------------------------LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
                                           CS       DVVE+ + A+++D   + A 
Sbjct: 1393 DASKTPCNRHATTPSPGDLPAESFARDFWVRCSRPPKCLPDVVEAYVGAVFVDSRYDFAR 1452

Query: 137  ------TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD------ 184
                    V  +++   L      +   T L      +        +     P       
Sbjct: 1453 VRAFFADHVRPFFEDMRLYDAFANKHPVTFLAGIMQGRMRCAEWRLLVKDLPPVVGAGAG 1512

Query: 185  ---HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 P+    V + GL  A  +  S R  +  AA + ++  
Sbjct: 1513 TELETPQVVCAVRVHGLTLAHAVAASGRYGKIAAAKKAIQVL 1554



 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 38/116 (32%), Gaps = 17/116 (14%)

Query: 1    MSAL--RYSTLE--KRIGYAFANRSLLEKALT--------HS----SISHSYQESYERLE 44
            M  +      LE  K +        L  +A T        H     S       +YERLE
Sbjct: 1056 MHRIDSNLVALEACKMLNLNVR-PDLALEAFTKDSDNSGEHDAEQISFQSGMGNNYERLE 1114

Query: 45   FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            FLGD  L +  +  +F       E E  V    L+        A E+ L   IR  
Sbjct: 1115 FLGDCFLKMATTISIFTLIPDKAEFEYHVERMLLICNRNLFNNALEVKLEEHIRSM 1170


>gi|289619621|emb|CBI53904.1| unnamed protein product [Sordaria macrospora]
          Length = 1586

 Score = 82.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 84/283 (29%), Gaps = 66/283 (23%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
                +R+GY F +  LL  A  H +    +    SY+RLEFLGD +  ++    LF  F 
Sbjct: 1259 DKFSERMGYKFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFP 1318

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102
            +A    L+    ++VS +    ++  L     +   S                       
Sbjct: 1319 AADPQWLTEHKMAMVSNQFLCCLSYHLGFYKCVATMSPSILKDIAEYVTEIEEALEAAKQ 1378

Query: 103  -----------------LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK- 144
                             +     S +    +DVVE+ I A+++D   + +          
Sbjct: 1379 EAVNQGKAPEEYSRDYWVHITHVSRLPKCLSDVVEAYIGAIFVDSEYDYSVVQQFFTTHV 1438

Query: 145  -----QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--------------- 184
                    L      +   T +      KF       +      D               
Sbjct: 1439 LPFFEDMHLYDSFANKHPVTFVANMMAHKFCCQEWRSLAKELDTDVSEGRGGRGGAVAGE 1498

Query: 185  ----HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                + P+    + + G   A  +  S R A+   A + +K  
Sbjct: 1499 ITEINPPKVVSALLVHGKTVAHAVAASGRYAKSAMAKKAIKML 1541



 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 12/99 (12%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +A T  S                  ++YERLEFLGD  L +  +  ++       
Sbjct: 1066 PDLALEAFTKDSDNSNEHDVEQVNFQTGMGDNYERLEFLGDSFLKMATTMSIYTLIPDKG 1125

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
            E E  V    L+  +     A E+ L  +IR  S  R+ 
Sbjct: 1126 EFEYHVERMLLICNKNLLNNALEVGLEEYIRSMSFNRRQ 1164


>gi|307169911|gb|EFN62420.1| Endoribonuclease Dcr-1 [Camponotus floridanus]
          Length = 506

 Score = 82.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           + +E +IGY F NR+ L +A TH S + +   E Y+RLEFLGD IL  LI+  ++    +
Sbjct: 252 NDMETKIGYKFNNRAFLLQAFTHPSYTPNVITECYQRLEFLGDAILDFLITCYIYETCGN 311

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
              G L+   ++LV+  T + +A    L + +   +    +        Q +
Sbjct: 312 LSPGHLTDLRSALVNNITFACLAVRYGLDTALLSYAPKLHEAIDRFVKFQQE 363


>gi|320527636|ref|ZP_08028810.1| RNase3 domain protein [Solobacterium moorei F0204]
 gi|320131957|gb|EFW24513.1| RNase3 domain protein [Solobacterium moorei F0204]
          Length = 373

 Score = 82.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 84/281 (29%), Gaps = 59/281 (20%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++  IGY F N+ LLE+A T  S S     E  E LEF+GD+ L + I  +L   F 
Sbjct: 7   INDIQNIIGYTFKNQELLEQAFTRRSYSMENGGEHNEVLEFIGDKALDIAIVKILSEEFG 66

Query: 65  SAKEGELSV-------------------------RFNSLVSAETCSQVARELDLASFIRV 99
              + E                                +V   T S     L L  ++ +
Sbjct: 67  YFNKSEQRRSNYYYSPKVYDGTFSSDKDEGELTEIKKRIVKKTTLSDAIDNLGLQHYLIM 126

Query: 100 SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK--------------- 144
               RK       S + D+ E++I A+ LD   ++                         
Sbjct: 127 GRGDRKKHVERSNSTKEDLFEAIIGAIALDSRWDINMIQETVENMIEIDDIIGSDEDSYI 186

Query: 145 --QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
              +      +       +  +  ++  +         +      +F   V  S    A 
Sbjct: 187 EEIQNWSLKHYDVLPDYSVCNYLPSEMNIGTPDWAKPNTMWSLINQFKRGVFDSNTQYAS 246

Query: 203 ------------GMDCSKRAAEQVAAAEVLKREG----IWT 227
                       G   SK  A++ A+    +       +WT
Sbjct: 247 LLILEDVPCCFIGYGNSKNQAKEEASRLAYEYLDEHDLLWT 287



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
           W  +       +R +  +L+  A   +   P Y        D +P +     I       
Sbjct: 286 WTIQDEIENPCKRMSVNQLETLARRGYFSLPTYNFYEDHDEDGNPVWKCECHIDEENIFC 345

Query: 203 -GMDCSKRAAEQVAAAEVLK 221
                SK+ A++ AA  +LK
Sbjct: 346 WSTASSKKDAKKDAAWGMLK 365


>gi|169768544|ref|XP_001818742.1| ATP-dependent helicase dcl2 [Aspergillus oryzae RIB40]
 gi|121804870|sp|Q2UNX5|DCL2_ASPOR RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
 gi|83766600|dbj|BAE56740.1| unnamed protein product [Aspergillus oryzae]
          Length = 1377

 Score = 82.3 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 3/116 (2%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L++ +GY F N  LL +ALTH S  H    +SY+RLEFLGD IL ++I  ++F + +  
Sbjct: 1094 DLQRHLGYTFKNEDLLIEALTHPSCQHDQTTQSYQRLEFLGDAILDMVIVPIIFQYSNKI 1153

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              G++++  +++V+A        E  +          +     F    +   VE  
Sbjct: 1154 SPGDMTLIKHAVVNANLLGFFCMEFSIEQDKTKVE--KTPDGRFAVKSETQHVELW 1207



 Score = 42.6 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            FA+   +  A+   S       +Y+R EFLGD IL  ++S  LF    +  EG L+    
Sbjct: 925  FADIQHVITAIMAPSAQ--GVTNYQRYEFLGDSILKYIVSCQLFFQNLNWPEGFLTEGRT 982

Query: 77   SLVSAETCSQVARELDLASFIR 98
            ++V     ++ A +  L SFI 
Sbjct: 983  TIVQNPRLTRAALDAGLDSFII 1004


>gi|156368540|ref|XP_001627751.1| predicted protein [Nematostella vectensis]
 gi|156214670|gb|EDO35651.1| predicted protein [Nematostella vectensis]
          Length = 199

 Score = 82.3 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 1/103 (0%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               EKRIGY F+N+  L +ALTH+S S +   + Y+RLEFLGD +L  L++ L+++   
Sbjct: 1   LQGFEKRIGYEFSNKLYLIQALTHASYSQNRLTDCYQRLEFLGDALLDFLVTELIYSRNT 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
           +   GEL+    +LV+    +++A +      +   S    + 
Sbjct: 61  NLDPGELTDLRQALVNNNIFAEIAVKHGFNKSLFQMSPEWFNK 103


>gi|86742282|ref|YP_482682.1| ribonuclease III [Frankia sp. CcI3]
 gi|86569144|gb|ABD12953.1| RNAse III [Frankia sp. CcI3]
          Length = 270

 Score = 82.3 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 6/197 (3%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL++ALTH S ++      + ERLEFLGD +LGL+++  LF       EG+L+ +  
Sbjct: 23  DPELLDRALTHRSYAYEKGGLPTNERLEFLGDAVLGLVVTAALFIRHPDLPEGQLAKQRA 82

Query: 77  SLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           S+V+    + VAR +       ++ +             SI AD +E++I A+YL  G++
Sbjct: 83  SVVNMRALADVARGIGPTGLGPYLLLGRGEETTGGRDKASILADTLEAIIGAVYLSSGLD 142

Query: 134 VAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           VA  FV + +       +G+          +   A   + P   +   +GPDH  RFT  
Sbjct: 143 VASGFVHRLFDPLLDEAAGRGAGLDWKTSLQEQTAVLALGPPEYIVEEAGPDHAKRFTAY 202

Query: 193 VEISGLAPAQGMDCSKR 209
             I+G    +G   SK+
Sbjct: 203 ARIAGEPLGEGEGGSKK 219


>gi|302755618|ref|XP_002961233.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii]
 gi|300172172|gb|EFJ38772.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii]
          Length = 1291

 Score = 82.3 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 38/247 (15%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              +LEK + Y F N++LL +A+TH+S +      Y+RLEF+GD +L  L++  LF     
Sbjct: 1044 LLSLEKELCYTFQNKALLLEAITHAS-TPDTVFCYQRLEFIGDAVLDFLVTRHLFTSHPG 1102

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRV---------------------SSDLR 104
               G LS   ++ V+ +  ++VA +  L S++R                       S + 
Sbjct: 1103 LSPGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGSAELRAKITSFLDVLDRDPECSVMF 1162

Query: 105  KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD------KYWKQRALKSGKFRRDAK 158
                       AD+VES+  A+ +D G +    +V        +     L     R   +
Sbjct: 1163 GFKALSGPKALADIVESVAGAILVDSGFDFEKLWVVLKRLLSPFVTPATLSFHPVREFHE 1222

Query: 159  TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
                +    ++  +             + RFT  V             +K+ A +  A +
Sbjct: 1223 LCSYKSWEFEWVQSSSGATAEILLKAGEQRFT-EVS---------SIKNKKDARKDVAEK 1272

Query: 219  VLKREGI 225
            +L    +
Sbjct: 1273 LLTMLKV 1279



 Score = 39.1 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 42/136 (30%), Gaps = 4/136 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           + +A T  S+      SYE LE LGD +L   ++  L+    +  EGELS R +  +   
Sbjct: 851 ILEART--SLRCQDGFSYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELSDRRSHAICNS 908

Query: 83  TCSQVARELDLASFIR--VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
           T  ++A   DL  ++R                         L   +  +           
Sbjct: 909 TLRKLAVAQDLPMYVRDEPFYPSCWVGAGMYRQRSRKCCCRLDNLVTKESSKPRPTDATY 968

Query: 141 KYWKQRALKSGKFRRD 156
              K            
Sbjct: 969 YVGKTCGQGHRWMCSK 984


>gi|148238540|ref|YP_001223927.1| ribonuclease III [Synechococcus sp. WH 7803]
 gi|147847079|emb|CAK22630.1| Ribonuclease III [Synechococcus sp. WH 7803]
          Length = 240

 Score = 81.9 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 8/206 (3%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L +ALTH+S        +E+LEFLGD +L L  S  +   +     GE S     LVS  
Sbjct: 32  LNEALTHTS--SGLNPHHEQLEFLGDAVLRLAASEFIATAYPQMPVGERSSLRAQLVSDR 89

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTFV 139
             +Q+   + +A + R+    +        +     +   +              A    
Sbjct: 90  WLAQLGEAIAIAQWWRI--GPKASGDPSAAATIRAELSEALIGAVYRIAGLQTVQAWLTP 147

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGL 198
                  A+ +  +R ++K+ LQEW+  +    P Y  +  S    DP RF   V +   
Sbjct: 148 HWQTSAEAVLADPYRGNSKSALQEWSQGQGLGLPRYSCSEVSQSHGDPKRFQASVTLPPD 207

Query: 199 APAQGMDCSKRAAEQVAAAEVLKREG 224
             A G   S+R AEQ AA  ++ +  
Sbjct: 208 LSAAGWGGSRREAEQQAAEALMAQLK 233


>gi|121610179|ref|YP_997986.1| ribonuclease III [Verminephrobacter eiseniae EF01-2]
 gi|189043373|sp|A1WMW1|RNC_VEREI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|121554819|gb|ABM58968.1| RNAse III [Verminephrobacter eiseniae EF01-2]
          Length = 247

 Score = 81.9 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 104/232 (44%), Gaps = 26/232 (11%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               L++R+ + F++  LLE+A TH S S  +    ERLEFLGD +L L +S+LL+    
Sbjct: 4   DLIALQERLQHVFSDPGLLERATTHRSFSAEH---NERLEFLGDSVLNLAVSSLLYQRLS 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVAREL--------------------DLASFIRVSSDLR 104
           +  EGELS    +LV  E+  Q+A  L                           +  D  
Sbjct: 61  ALPEGELSRVRANLVRQESLYQLALRLPLAQALRLGESLSGNRQRRSRRRCADELQPDEA 120

Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQ 162
                   SI AD +E+LI A+YLD G   A           + + +     RDAKT LQ
Sbjct: 121 GSGGLQHPSILADALEALIGAVYLDAGYASAQALVQRLFQDVEISPRMQAAARDAKTALQ 180

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
           EW  ++    P+Y+V  R G  H P F V   I  L   + G   S++A EQ
Sbjct: 181 EWLASRKMKPPQYQVVARVGAAHCPTFEVACGIPALGLTERGSAGSRQAGEQ 232


>gi|254423613|ref|ZP_05037331.1| ribonuclease III [Synechococcus sp. PCC 7335]
 gi|196191102|gb|EDX86066.1| ribonuclease III [Synechococcus sp. PCC 7335]
          Length = 263

 Score = 81.9 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 5   RYSTLEKRIGYAFAN--RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
               L   +G + A+    LLE AL   S   S  ++ E+LEFLGD  L L  +  L   
Sbjct: 33  DIEALLTALGISAADVRLELLELALVDIS--SSATQNNEKLEFLGDAALRLAAAEFLMER 90

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--RKDVCSFMTSIQADVVE 120
           +     G++S   + +VS  T + +A+   L  ++ +S      K       +   + + 
Sbjct: 91  YPQMALGDMSAVRSQIVSDRTLATLAKRYHLRRYLILSKSAAGDKAGTDSRLADTFEAIL 150

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
             +     +  +             ++L+S   R++ K  LQE   + +   P YKV+  
Sbjct: 151 GALYLSAGNLSLIRPWLDPHFARLTQSLRSDPARQNYKAALQELTQSHYKSLPTYKVSEI 210

Query: 181 SGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKR 222
           S    D  RF             G   S + AEQ AA      L++
Sbjct: 211 SQIHGDEERFQAEAWFQDKLWGTGKGRSMKMAEQAAARIAFNALEQ 256


>gi|198457361|ref|XP_001360634.2| GA19635 [Drosophila pseudoobscura pseudoobscura]
 gi|198135949|gb|EAL25209.2| GA19635 [Drosophila pseudoobscura pseudoobscura]
          Length = 1720

 Score = 81.9 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 1/121 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE+ +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1438 INHSYLEQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDFLISAYIFEN 1497

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             +  + GEL+   ++LV+  T   +     L  FI   + L  +  S     Q      +
Sbjct: 1498 NNKLRPGELTDLRSALVNNTTLGCICVRHKLHLFILAENALLSETISKFVKFQESQGHRV 1557

Query: 123  I 123
             
Sbjct: 1558 T 1558


>gi|270001216|gb|EEZ97663.1| hypothetical protein TcasGA2_TC016208 [Tribolium castaneum]
          Length = 1063

 Score = 81.9 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 12/198 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E+ +G  F +  LL +A T  S   ++    S +RLEFLGD +L L+ S  L+ +
Sbjct: 867  NLTKFEESVGLQFNHIRLLARAFTDRSVGYTNLTLGSNQRLEFLGDTVLQLIASEYLYKY 926

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L ++++               T  +AD++E+ 
Sbjct: 927  FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMSNYAV----YNNPKAELKTKDRADLLEAF 982

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            I ALY+D G+E    F       R             +      +K         T   G
Sbjct: 983  IGALYVDQGLEFCEVFCQVTLFPRLQDFI------MNQDWNDPKSKLQQCCLTLRTMDGG 1036

Query: 183  PDHDPRFTVVVEISGLAP 200
                P +  VV  +    
Sbjct: 1037 EPDIPVYKSVVCFTNSEV 1054



 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
            + LE+ + Y F NR+LL+ ALTH S   ++  +
Sbjct: 636 LNILEESVNYKFKNRALLQLALTHPSYRENFGTN 669



 Score = 44.9 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 48/98 (48%)

Query: 33  SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD 92
           + S     ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A+ L 
Sbjct: 718 TESNITHNERLEFLGDAVVEFLSSIHLFYTFPDLEEGGLATYRAAIVQNQHLAVLAKTLK 777

Query: 93  LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L  F+  +          +    A+  E+L+ AL+LDG
Sbjct: 778 LDQFMLYAHGSDLCHDLELRHAMANCFEALMGALFLDG 815


>gi|284039991|ref|YP_003389921.1| ribonuclease III [Spirosoma linguale DSM 74]
 gi|283819284|gb|ADB41122.1| ribonuclease III [Spirosoma linguale DSM 74]
          Length = 253

 Score = 81.9 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 7/202 (3%)

Query: 12  RIGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            IG   +N  L + AL H+S S       ++ES ERLE+LGD +LG++I+  LF  +   
Sbjct: 34  IIGARPSNLGLYQLALRHTSASKATAIEGFRESNERLEYLGDAVLGMVIAEFLFKKYPYK 93

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+   + +V+ ET + +AR++ L   +      R       TS+  D +E+L+ A+
Sbjct: 94  DEGFLTEIRSRIVNRETLNGIARKIGLDQ-LIEYDGSRTRSLPARTSMYGDALEALVGAV 152

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA-HAKFGVTPEYKVTFRSGPDH 185
           YLD G   +  F+ K            + +   + +      + G    +++    G  H
Sbjct: 153 YLDKGFRFSRRFILKDLLAHYDIESVVQNNGNYKSRLIEWAQREGKEIRFEIVSEKGNSH 212

Query: 186 DPRFTVVVEISGLAPAQGMDCS 207
              F   V I     A G   S
Sbjct: 213 FREFISQVVIDDEPFATGSGYS 234


>gi|195150547|ref|XP_002016212.1| GL10619 [Drosophila persimilis]
 gi|194110059|gb|EDW32102.1| GL10619 [Drosophila persimilis]
          Length = 1720

 Score = 81.9 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 1/121 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE+ +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1438 INHSYLEQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDFLISAYIFEN 1497

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                + GEL+   ++LV+  T   +     L  FI   + L  +  S     Q      +
Sbjct: 1498 NTKLRPGELTDLRSALVNNTTLGCICVRHKLHLFILAENALLSETISKFVKFQESQGHRV 1557

Query: 123  I 123
             
Sbjct: 1558 T 1558


>gi|195425457|ref|XP_002061021.1| GK10670 [Drosophila willistoni]
 gi|194157106|gb|EDW72007.1| GK10670 [Drosophila willistoni]
          Length = 1720

 Score = 81.9 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 1/121 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + Y  LE+ +GY F +R+ L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F  
Sbjct: 1436 INYHYLERNLGYTFKDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFER 1495

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G+L+   ++LV+  T + +        FI   + L  +  +     Q   +  +
Sbjct: 1496 NIRMNPGQLTDLRSALVNNTTLACICVRHRFHLFILAENTLLTESINSFVDFQEKHMHRV 1555

Query: 123  I 123
             
Sbjct: 1556 T 1556



 Score = 40.3 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 5    RYSTLEKRI---GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            + S L+K I       A +S    A+T  S   S     ERLE LGD  L +  +  L +
Sbjct: 1179 QLSVLQKTISNEHITPAEQSEFLTAIT--SSGCSDVFDMERLELLGDSFLKMSATLYLSS 1236

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVAR 89
               +  EG L+   ++LVS         
Sbjct: 1237 IHSNWNEGVLTQIKSTLVSNRNLLYCMN 1264


>gi|86605510|ref|YP_474273.1| ribonuclease III [Synechococcus sp. JA-3-3Ab]
 gi|86554052|gb|ABC99010.1| ribonuclease III [Synechococcus sp. JA-3-3Ab]
          Length = 241

 Score = 81.5 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 16/215 (7%)

Query: 6   YSTLEKRIGYAFANR--------SLLEKALTHSSISHSYQESYERLEFLGDRILGLLIST 57
              L  R+G  F +          LL++AL H S+    Q + +RLEFLGD +L +L + 
Sbjct: 12  LEHLLNRLG--FKDPAWLEQLRWDLLDQALIHPSL--DGQRNNDRLEFLGDSVLRILATE 67

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  +     GEL+   + L+S    +++A    L  ++ V S  + D+        AD
Sbjct: 68  FLFQSYPHLSVGELTAVRSDLISDAHLAELADLHGLERYLEVGSSSQNDLAGRER-RLAD 126

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
             E+++ +LYL  G+                +  ++ +D      + A  +        +
Sbjct: 127 AFEAVLGSLYLSWGMHTLARLHPWLDPYFRQRVEQWFQDPTRRNPKAALQELTQRLWGTL 186

Query: 178 TFRS---GPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                    +H P FT+ V   G    +G   SK+
Sbjct: 187 PEYRLVAAREHPPHFTMEVWGHGQCWGRGEGRSKK 221


>gi|310798327|gb|EFQ33220.1| RNase3 domain-containing protein [Glomerella graminicola M1.001]
          Length = 1532

 Score = 81.5 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58
            M       +++ +GY F   +LL  A  H S   ++    +Y+RLEFLGD +L ++    
Sbjct: 1233 MQKELARQIKENLGYEFKYPALLRSAFKHPSYPRAYEDLPNYQRLEFLGDALLDMVCVDF 1292

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
            LF  F  A    L+    ++VS +  + +  +L L   
Sbjct: 1293 LFKKFPDADPQWLTEHKTAMVSNQFLACLCVQLGLHKH 1330



 Score = 39.5 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 12/91 (13%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +A+T  S                  ++YE+LEFLGD  L +  +  LF       
Sbjct: 1046 PDLALEAVTKDSDNSDEHGKNKINFQGGMGKNYEQLEFLGDCFLKMATTIALFTQNPEDN 1105

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            E    V    L+  +     A +  L  ++R
Sbjct: 1106 EFAYHVERMLLICNQNLFNKAVDRSLPEYVR 1136


>gi|300868781|ref|ZP_07113390.1| ribonuclease III [Oscillatoria sp. PCC 6506]
 gi|300333217|emb|CBN58582.1| ribonuclease III [Oscillatoria sp. PCC 6506]
          Length = 237

 Score = 81.5 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 8/210 (3%)

Query: 6   YSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              L +++G    NR    LL+ ALTH + S   Q +YE+LEF+GD ++ L  S LLF  
Sbjct: 12  LEKLVEKLGLPDRNRVNWQLLDLALTHPTAS--TQANYEQLEFIGDAVVRLAASELLFET 69

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  +  GE +   + LVS  T +Q+A       ++ VSS    D     + +       L
Sbjct: 70  YPGSSVGEFAAIRSLLVSDRTLAQIADSYGFGRYLIVSSSAACDKAGEESRLADAFEAVL 129

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA-HAKFGVTPEYKVTFRS 181
            A       +++   ++D +++ RA +          +                     +
Sbjct: 130 AALYLSTNTLQLIRPWLDPHFQPRAAQILSDPARQNYKAALQEWTQGQYKILPEYNVKET 189

Query: 182 GPDH--DPRFTVVVEISGLAPAQGMDCSKR 209
           G  H  + RFT  V + G    +G   S +
Sbjct: 190 GRVHGEEERFTAEVWLRGDLLGEGKGRSIK 219


>gi|85105148|ref|XP_961898.1| hypothetical protein NCU08270 [Neurospora crassa OR74A]
 gi|74616659|sp|Q7S8J7|DCL1_NEUCR RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl-1; Includes: RecName:
            Full=ATP-dependent helicase dcl-1
 gi|28923482|gb|EAA32662.1| predicted protein [Neurospora crassa OR74A]
          Length = 1584

 Score = 81.5 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 82/285 (28%), Gaps = 68/285 (23%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
                +R+GY F +  LL  A  H +    +    SY+RLEFLGD +  ++    LF  F 
Sbjct: 1259 KKFSERMGYKFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFP 1318

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102
            +A    L+    ++VS +    ++  L     I   S                       
Sbjct: 1319 AADPQWLTEHKMAMVSNQFLCCLSFHLGFNKCIATMSPSILKDIAEYVTEIEEALETAKQ 1378

Query: 103  -----------------LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK- 144
                             +     S +    +DVVE+ I A+++D   + +          
Sbjct: 1379 EAINAGKTADEYSRDYWVHITHASRLPKCLSDVVEAYIGAIFVDSEYDYSVVQNFFNMHV 1438

Query: 145  -----QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--------------- 184
                    L      +   T +      KF              D               
Sbjct: 1439 LPFFEDMHLYDTFANKHPVTFVANMMAHKFRCNEWRSFAKELDTDVTEGRGGRGGNGAVA 1498

Query: 185  ------HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                  + P+    + + G      +  S R A+   A + +K  
Sbjct: 1499 GEISEINPPKVVSALLVHGKTVVHAVAASGRYAKSAMAKKAIKLL 1543



 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 12/99 (12%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +A T  S                  ++YERLEFLGD  L +  +  ++       
Sbjct: 1066 PDLALEAFTKDSDNSDEHDAEKENFQTGMGDNYERLEFLGDSFLKMATTIAIYTLIPDKG 1125

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
            E E  V    L+  +     A E+ L  +IR  S  R+ 
Sbjct: 1126 EFEYHVERMLLICNKNLFNNALEIGLEEYIRSMSFNRRQ 1164


>gi|313906469|ref|ZP_07839804.1| ribonuclease III [Eubacterium cellulosolvens 6]
 gi|313468696|gb|EFR64063.1| ribonuclease III [Eubacterium cellulosolvens 6]
          Length = 365

 Score = 81.1 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 86/268 (32%), Gaps = 49/268 (18%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLL 59
           M  +    ++ +IGY F N  LL +A    S +     E+ E LEF+GD +L   +   L
Sbjct: 7   MKTV----VQNQIGYEFQNPLLLRQAFVRKSYTEENGGENNEVLEFIGDTVLSTAVMRYL 62

Query: 60  ----------------------FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                                  +      EGELS     L   +T ++   EL    F+
Sbjct: 63  TEKYGNAPSFKRPIWPNTPQKPMDFHCEKTEGELSRLKQKLTEKKTLARKIDELGFDKFL 122

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRR 155
            +         +   S++ D+ E+++ A+ LD   +        +      ++ +     
Sbjct: 123 IMGKGDIGQNMTKQASVKEDLFEAILGAVALDSSFDYKKIQSVVEIMLHPDSIVNDGEEA 182

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSG--------------PDHDPRF-----TVVVEI- 195
           D    + EW +A   +          G              PD    F     T  + I 
Sbjct: 183 DYVQLIYEWDNAFGAIPYFRYRQEPYGISLSPYNPEVIVIVPDQRSSFSELCYTCEMSIR 242

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             L   +    SK  A Q A     K  
Sbjct: 243 KDLPRFKAYGSSKAIARQNACEAAYKYL 270


>gi|94469424|gb|ABF20201.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 145

 Score = 81.1 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 74/136 (54%)

Query: 89  RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
           + ++L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  + K  A 
Sbjct: 6   QSINLGIFIIMSDGERSCGGAKNSNNLENALEALIGAIYLDGGLKAAKDFIFLFRKNSAT 65

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                 +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I           +K
Sbjct: 66  HMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATGHNK 125

Query: 209 RAAEQVAAAEVLKREG 224
           + AEQ AA+ +L++  
Sbjct: 126 KLAEQKAASLMLEKIN 141


>gi|226510363|ref|NP_001140816.1| hypothetical protein LOC100272891 [Zea mays]
 gi|194701228|gb|ACF84698.1| unknown [Zea mays]
          Length = 376

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 93/242 (38%), Gaps = 32/242 (13%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +E+ + Y F +R+LLE+ALTH S S     SY+RLEF+GD  LGL  S  L+    + 
Sbjct: 42  ARVERLLRYQFCDRALLEEALTHQSFSDG-ALSYQRLEFVGDAALGLAFSNFLYLTNPTL 100

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL----------------------R 104
             G LS    + +S E  ++VA   DL   +R                            
Sbjct: 101 GPGALSTLRAANISTEKLARVAVRHDLYPLLRRKCPRLDLLVGQFIESVKQELMHDLATA 160

Query: 105 KDVCS--FMTSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGKFRRDAKTEL 161
               S      + AD+VE++ AA+Y+D   ++     V ++  +  + +        T L
Sbjct: 161 PYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDEQPVTTL 220

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            E       V              D    V V + G     G    K  A+  AA + L 
Sbjct: 221 HELCQKHGKVAQFKTWQK------DGMIVVNVFVGGEMVGLGSSEQKVIAKLNAARDALG 274

Query: 222 RE 223
           + 
Sbjct: 275 KL 276



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS---GLAPAQGMDCSK-RA 210
           R+ K +L E    K    P +K+    GP H+  F   V++    G     G   S+ + 
Sbjct: 301 RECKQKLIEQCIRKHWPKPIFKLEKEGGPAHERNFVCSVQVDTQTGTFVTIGESMSRVKD 360

Query: 211 AEQVAAAEVLKRE 223
           AE  AA ++++  
Sbjct: 361 AENSAAHKMVELL 373


>gi|255030397|ref|ZP_05302348.1| ribonuclease III [Listeria monocytogenes LO28]
          Length = 102

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 6/102 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  ++  L++ +G+ F N  LL++A THSS  + ++    +  ERLEFLGD +L L +S
Sbjct: 1   MN--QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             LFN +    EG ++    ++V   +  + A  +  + ++R
Sbjct: 59  DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVR 100


>gi|317148472|ref|XP_001822794.2| RNase3 domain protein [Aspergillus oryzae RIB40]
          Length = 354

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 78/212 (36%), Gaps = 13/212 (6%)

Query: 21  SLLEKA-LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
            +LE+A  TH  +S+  +++Y+RLE LGD  + L+ + L++  F     G +S     LV
Sbjct: 123 KVLERAVFTHPGVSNDTEKTYDRLEILGDAYIELIATKLIWKRFREIPSGRISQIRELLV 182

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
             ET ++ A    L     V  D  +      T  +AD+ E+ +AA  +   ++      
Sbjct: 183 KNETLAEYAAGYGLDRKAAVPQDYLRQS-KRWTKTRADIFEAYVAAAIISHPVDGYRVVE 241

Query: 140 DKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-----DHDPRFTVVV 193
           +   +    K  +   +      +E    K              P          F V V
Sbjct: 242 NWLTQLWLPKLSELGIQKPVLNAKELLARKIMGKGIKLRYIDEHPPAQQGPGMQTFFVGV 301

Query: 194 EI-----SGLAPAQGMDCSKRAAEQVAAAEVL 220
            +     +      G   +K  A   AA + L
Sbjct: 302 YLTGWGWNNKHLGSGQGPNKTIAGNEAAHQAL 333


>gi|238503379|ref|XP_002382923.1| nucleolar RNAse III, putative [Aspergillus flavus NRRL3357]
 gi|83771529|dbj|BAE61661.1| unnamed protein product [Aspergillus oryzae]
 gi|220691733|gb|EED48081.1| nucleolar RNAse III, putative [Aspergillus flavus NRRL3357]
          Length = 234

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 78/212 (36%), Gaps = 13/212 (6%)

Query: 21  SLLEKA-LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
            +LE+A  TH  +S+  +++Y+RLE LGD  + L+ + L++  F     G +S     LV
Sbjct: 3   KVLERAVFTHPGVSNDTEKTYDRLEILGDAYIELIATKLIWKRFREIPSGRISQIRELLV 62

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
             ET ++ A    L     V  D  +      T  +AD+ E+ +AA  +   ++      
Sbjct: 63  KNETLAEYAAGYGLDRKAAVPQDYLRQS-KRWTKTRADIFEAYVAAAIISHPVDGYRVVE 121

Query: 140 DKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-----DHDPRFTVVV 193
           +   +    K  +   +      +E    K              P          F V V
Sbjct: 122 NWLTQLWLPKLSELGIQKPVLNAKELLARKIMGKGIKLRYIDEHPPAQQGPGMQTFFVGV 181

Query: 194 EI-----SGLAPAQGMDCSKRAAEQVAAAEVL 220
            +     +      G   +K  A   AA + L
Sbjct: 182 YLTGWGWNNKHLGSGQGPNKTIAGNEAAHQAL 213


>gi|328768090|gb|EGF78137.1| hypothetical protein BATDEDRAFT_37305 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 343

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 82/231 (35%), Gaps = 13/231 (5%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  + +    R G  F    +L   +TH S    + ES +R  +LG  +L   ++  +  
Sbjct: 84  NKAQVAAFSARTGILFDTPDILSLVMTHKSA---HLESNDRYVYLGSTVLKTFVTEYVLA 140

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADV 118
            +   +         + +S    + V + L +   +R       +  +    + +++A V
Sbjct: 141 KYPLMQADIAERVIEAYISTSVVASVGQTLGVHLLMRWKGSTDANSNAVSDGVNTVRASV 200

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF------RRDAKTELQEWAHAKFGVT 172
           + +LI A+Y   G   A T + K++  RA                +  L           
Sbjct: 201 MHALIGAVYQHKGPHAARTLIHKHFLSRATDVQSIVEAQLKMDKPRKLLAITCKNLKKPK 260

Query: 173 PEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P  ++   +G       F V V        +G   S + AEQ A  + L +
Sbjct: 261 PISRLLGETGRLSSRSVFLVGVYCGIEKIGEGYGSSIKMAEQRACIDALSK 311


>gi|222619725|gb|EEE55857.1| hypothetical protein OsJ_04485 [Oryza sativa Japonica Group]
          Length = 1839

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 1/98 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  LE ++GY+F+ + LL +ALTH S      +  YERLEFLGD +L +L++  LFN   
Sbjct: 1175 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1234

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
               EGEL+   ++ V+ E  +QVA + +   F++ SS 
Sbjct: 1235 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSG 1272


>gi|218189575|gb|EEC72002.1| hypothetical protein OsI_04862 [Oryza sativa Indica Group]
          Length = 1858

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 1/98 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  LE ++GY+F+ + LL +ALTH S      +  YERLEFLGD +L +L++  LFN   
Sbjct: 1175 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1234

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
               EGEL+   ++ V+ E  +QVA + +   F++ SS 
Sbjct: 1235 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSG 1272


>gi|115441737|ref|NP_001045148.1| Os01g0909200 [Oryza sativa Japonica Group]
 gi|75321191|sp|Q5N870|DCL3A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3a; AltName:
            Full=Dicer-like protein 3a; Short=OsDCL3a
 gi|56785369|dbj|BAD82327.1| putative Endoribonuclease Dicer homolog [Oryza sativa Japonica Group]
 gi|113534679|dbj|BAF07062.1| Os01g0909200 [Oryza sativa Japonica Group]
          Length = 1651

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 1/98 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  LE ++GY+F+ + LL +ALTH S      +  YERLEFLGD +L +L++  LFN   
Sbjct: 1241 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1300

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
               EGEL+   ++ V+ E  +QVA + +   F++ SS 
Sbjct: 1301 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSG 1338



 Score = 46.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 7    STLEKRIGYAFANRS--LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            S L   IGY+ +N S  L+ +A+T  ++  S   S ERLE LGD +L   +S  LF  F 
Sbjct: 1032 SQLRSEIGYSDSNISSFLILEAIT--TLRCSEDFSMERLELLGDSVLKYAVSCHLFLKFP 1089

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            +  EG+LS     ++   T  ++  E ++  ++R
Sbjct: 1090 NKDEGQLSSIRCHMICNATLYKLGIERNVQGYVR 1123


>gi|289209108|ref|YP_003461174.1| ribonuclease III [Thioalkalivibrio sp. K90mix]
 gi|288944739|gb|ADC72438.1| ribonuclease III [Thioalkalivibrio sp. K90mix]
          Length = 236

 Score = 81.1 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 67/187 (35%), Positives = 93/187 (49%), Gaps = 6/187 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
            +ALTH S       + ERLEFLGD +LGL+I+  L+     A EG+L+    +LV+ E+
Sbjct: 30  RQALTHRSAG---GRNNERLEFLGDAVLGLVIADALYEQLPDAPEGDLTRLRAALVNRES 86

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            + +ARE  L   + +    RK       SI AD VE+LI   Y + G++ A  F    +
Sbjct: 87  LAALARESGLEGTLNLGQGERKSGGQRRDSILADAVEALIGVTYREAGMQAARDFTLALY 146

Query: 144 KQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +R   L S +  +D KT LQE    +    P Y+V    GPDH  RFTV V +      
Sbjct: 147 AERLGNLPSAESLKDPKTRLQEQLQGRNAELPVYEVLEVVGPDHQRRFTVSVHLPTQGWG 206

Query: 202 -QGMDCS 207
            QG   S
Sbjct: 207 QQGEGSS 213


>gi|224116530|ref|XP_002317324.1| predicted protein [Populus trichocarpa]
 gi|222860389|gb|EEE97936.1| predicted protein [Populus trichocarpa]
          Length = 217

 Score = 80.7 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 26/216 (12%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +EK + Y F N+  LE+ALTHSS +     SY+R+EFLGD  LGL +S  ++  +    
Sbjct: 7   AVEKILNYKFKNKRHLEEALTHSSYTD--SASYQRMEFLGDAALGLALSNYVYLAYPQLD 64

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM---------------- 111
            G LS+   + +S E  ++VA +  L  F+R ++    D                     
Sbjct: 65  PGHLSLLRAANISTEKLARVAIKHGLYRFVRHNATALDDKVKEFSDAVSGEDDDDALVYG 124

Query: 112 -----TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
                  I AD+VES+ AA+Y+D   ++   +V        + + +  +     +     
Sbjct: 125 GSIKAPKILADIVESVAAAVYVDVDFDLQTFWVIFRGILEPIVTLEDLQQQPQPVTMLFE 184

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
                     +               V + G   A 
Sbjct: 185 RCQKQGKNVDIKHWKNEAKS---IASVYVDGQFIAS 217


>gi|317133782|ref|YP_004089693.1| ribonuclease III [Ruminococcus albus 7]
 gi|315450244|gb|ADU23807.1| ribonuclease III [Ruminococcus albus 7]
          Length = 506

 Score = 80.7 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 88/248 (35%), Gaps = 35/248 (14%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLF------ 60
           L    GY F N +LL +A T  +    Y      E+ EFLG+ +L  +++  +       
Sbjct: 148 LSSITGYKFQNENLLRQAFTRKAFKEEYHLTRCSEQFEFLGNAVLNAMVTKEIVKQSILN 207

Query: 61  ---------NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
                           +G ++      V+ E  ++ A  L    FI      +K   S  
Sbjct: 208 LPEYVDGVAWLNSERDKGYMTKLRTQYVNKEFLAERATTLGFDRFILYGKGEKKSQNSR- 266

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
                D++E++I A+  D   + +      +                 E+ +W    FG 
Sbjct: 267 ----GDIIEAIIGAVAFDCNWDWSTLEKVVFNLINFCIPHLGHECYFDEMNKWHQKHFGK 322

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEI----SGLAPAQ-----G-MDCSKRAAEQVAAAEV-- 219
            PEYKV  ++ PD    F  V+      +           G    ++  A++ AA +   
Sbjct: 323 IPEYKVFQKNKPDDTECFECVIRFSLPENDKGIETIQEKVGKEGSTRSLAKENAAKKAVD 382

Query: 220 -LKREGIW 226
            LK  G+W
Sbjct: 383 FLKEIGLW 390


>gi|162447497|ref|YP_001620629.1| dsRNA-spesific ribonuclease [Acholeplasma laidlawii PG-8A]
 gi|161985604|gb|ABX81253.1| dsRNA-spesific ribonuclease [Acholeplasma laidlawii PG-8A]
          Length = 335

 Score = 80.7 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 87/235 (37%), Gaps = 18/235 (7%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLL 59
           M       +E  +GY F N++LL +A T SS    +     E LEF+GD ++  +I  + 
Sbjct: 1   MKEKDIKEIEDILGYTFTNKNLLIQAFTRSSEREKNNNRDSEILEFIGDTVINYVIIQMF 60

Query: 60  FNH---------FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
            N+              EGEL+   + +V  +  +    +  L  F+R  +  +      
Sbjct: 61  NNNLFNADNYGLNSQYSEGELTELKSLIVENKNLAAKIDDFGLDRFLRSDNSKQ-----I 115

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAK 168
            +S ++D++ES++ A+ +D   E    +    +    RA              Q      
Sbjct: 116 PSSFKSDLLESIVGAIAIDSHYEEKEIYEIVDYLLMPRAYIGSLKFNYYLKLKQWCKIRC 175

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                  +       D++ ++   +          +D SK  +   A+   +K+ 
Sbjct: 176 TSSNKLKENVEEIKNDNNIQYKTTLRFGNYEV-SAIDNSKIDSLFEASILAMKKI 229


>gi|170049284|ref|XP_001855187.1| endoribonuclease Dicer [Culex quinquefasciatus]
 gi|167871117|gb|EDS34500.1| endoribonuclease Dicer [Culex quinquefasciatus]
          Length = 1665

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +E+ + Y F +R+ L +ALTH+S  ++    SY++LEF+GD +L  LIS  ++    + 
Sbjct: 1412 RIERILDYTFKDRTYLLQALTHASYPTNRITGSYQQLEFVGDAVLDFLISAYIYEQNPTM 1471

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASF 96
              G+L+   ++LV+  T + +     L  +
Sbjct: 1472 SPGQLTDLRSALVNNITLACILVRHGLHLY 1501



 Score = 39.9 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 2/107 (1%)

Query: 23   LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
            + KALT  S    Y    ER E LGD  L   +S  L        EG L+     LVS  
Sbjct: 1184 IIKALTTKSAHDVY--DLERYELLGDAFLKFSVSLFLVKKHKEWHEGHLTAVKGQLVSNR 1241

Query: 83   TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
                 A  ++L   +++ +   K+  S   +     V+  +A++   
Sbjct: 1242 NLLYCAMLINLPGMMKIHTFDPKNDWSPPLASVPHAVKQKMASINHS 1288


>gi|220905831|ref|YP_002481142.1| Ribonuclease III [Cyanothece sp. PCC 7425]
 gi|219862442|gb|ACL42781.1| Ribonuclease III [Cyanothece sp. PCC 7425]
          Length = 238

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 79/210 (37%), Gaps = 7/210 (3%)

Query: 5   RYSTLEKRIGY---AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   L  R+G          LL+ ALTH + S   Q +YE+LEF GD +  L ++  L  
Sbjct: 11  QLEKLIDRLGLVNPPPIRWDLLDLALTHPTFS--PQANYEQLEFFGDAVARLTVAQFLRQ 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--RKDVCSFMTSIQADVV 119
            +     GE +   + LVS  T + +     L  F+ + S         +   +   + +
Sbjct: 69  TYPDRSVGEWTAIRSVLVSDRTLATIGDSYGLERFLLMGSSAAADASGQTSRLADAMEAL 128

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            + +     D  +              A+ +    ++ K  LQ W  A     PEY+V  
Sbjct: 129 LAALYLSTSDFRLIHPWLDRHWQPLAEAILNDPAHQNYKAALQTWTQATSRTLPEYRVQE 188

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                 + RF   V + G+   QG   S +
Sbjct: 189 IQQASPEERFQAEVWVQGVLLGQGTGRSIK 218


>gi|126178317|ref|YP_001046282.1| ribonuclease III [Methanoculleus marisnigri JR1]
 gi|125861111|gb|ABN56300.1| RNAse III [Methanoculleus marisnigri JR1]
          Length = 258

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 14/208 (6%)

Query: 22  LLEKALTHSSISH------SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           L ++ALTH S ++         E  ERLEFLG+ +L  +I+  L+  +D         R 
Sbjct: 56  LYDRALTHRSYANHGEYPAETFEDNERLEFLGNYVLDFVIADHLYGEYDLPPGEM--NRR 113

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
             +      +++ R   L     +   +R+       SI AD  E+LI A+YLD G+ VA
Sbjct: 114 LQVTRNTKLAEIVRRQGLG----IDGAVRRRGQPPTDSIVADAFEALIGAIYLDRGLGVA 169

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
              V   +++   +    R        +   A+  +        ++GP + P +   V +
Sbjct: 170 RDVVLAIFEEEIAECDTHRN--YRGRLQEYVARENLGELEYAFLQTGPGNCPVWAARVTV 227

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            G+   +G   +K+ A  +AA E L R 
Sbjct: 228 GGIPFGEGEARTKQGAAMIAAKEALARL 255


>gi|94469418|gb|ABF20197.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 145

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 76/136 (55%)

Query: 89  RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
           + ++L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A 
Sbjct: 6   QSINLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSAT 65

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                 +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I+     +    +K
Sbjct: 66  HMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLRATGHNK 125

Query: 209 RAAEQVAAAEVLKREG 224
           + AEQ AA+ +L +  
Sbjct: 126 KLAEQKAASLMLAKIN 141


>gi|331236934|ref|XP_003331125.1| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309310115|gb|EFP86706.1| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1465

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 90/258 (34%), Gaps = 38/258 (14%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            L+   LEK+IGY F  + LL +ALTH S +      YER E+LGD ++ + I    +  F
Sbjct: 1099 LKCQALEKKIGYVFKEKLLLVQALTHRSANSFMTNCYEREEWLGDAVIDMWIVEHAYKRF 1158

Query: 64   DSAKEGELSVRFNSLVSAET-CSQVARELDLASFIRVSSDL------------------- 103
            D A   EL++    +VS  +      ++L L   I  +S+                    
Sbjct: 1159 DHATAEELTLARAKVVSNGSLGFLALKKLGLQEIIMHASENFEQACTEAIEAIKPFAKIE 1218

Query: 104  -------RKDVCSFMTSIQADVVESLIAALYL---DGGIEVAGTFVDKYWKQRALKSGKF 153
                      V      I  DV+E+++ A+++           T    +       S   
Sbjct: 1219 EYFSTIDNLFVVFDPPKILNDVLEAIVGAVFIDSGFNLHTAYRTLDIIFEDVIPGLSRLV 1278

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVT-------FRSGPDHDPRFTVVVEISGLAPAQGMDC 206
             RD  + +                T          G D        +E+ G   A G   
Sbjct: 1279 ARDPLSTMLRLRDQYQCAELRRISTTIREPNPNEEGKDPISVKVCRIELHGQEIASGRHK 1338

Query: 207  SK-RAAEQVAAAEVLKRE 223
            S    AEQ A+ E LK  
Sbjct: 1339 SSASVAEQRASLEALKVL 1356



 Score = 37.2 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 2   SALRYSTLEKRIGYAFANRSLL--EKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
             L+ + L KR+   F   SLL   +ALT           Y+ LE LGD  L L  S  +
Sbjct: 919 DTLQATALFKRLD--FPTISLLHGIQALTPP--GGGVPWDYQTLETLGDAFLKLATSVHV 974

Query: 60  FNHFDSAKEGELSVRFNSLVSA 81
           +       EG++S   +  V  
Sbjct: 975 YLSHLKKGEGDMSHVRSRSVDN 996


>gi|169610828|ref|XP_001798832.1| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15]
 gi|160702165|gb|EAT83689.2| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15]
          Length = 1443

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 72/234 (30%), Gaps = 18/234 (7%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             +E +  Y F    LL  A  H S         SY+RLEFLGD +L +     LF  +  
Sbjct: 1164 KIEMKHPYRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYPD 1223

Query: 66   AKEGELSVRFNSLVSAET-----CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                 L+     +VS +            E++ A      +       S      ADV+E
Sbjct: 1224 KDPQWLTEHKTPMVSNKFLGAVQIRDYVYEVEEAEREANGAVDYWVSVSEPPKCLADVIE 1283

Query: 121  SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--------RRDAKTELQEWAHAKFGVT 172
            + +AA+++D   +            +                    T L       FG +
Sbjct: 1284 AFVAAIFVDSEFDFNVVQKFFDLHLKPFFLDMTLDAYENFASNHPTTRLSRLLSINFGCS 1343

Query: 173  PEYK---VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                    T    P        +V I        +  S R A   A+   L++ 
Sbjct: 1344 EWRMGALETETLIPGKGKAIAAMVMIHDKVHFHSLGQSGRYARVRASHAALEKL 1397



 Score = 41.8 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 12/78 (15%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             +L  +ALT  S                   +YERLEFLGD  L +  S  +F       
Sbjct: 946  PALALEALTKDSDNSEEHGEEKINFKSGMGPNYERLEFLGDCFLKVATSLSVFVQQPEEN 1005

Query: 68   EGELSVRFNSLVSAETCS 85
            E E  VR   ++  +   
Sbjct: 1006 EFEFHVRRMLMLCNQNLM 1023


>gi|294655098|ref|XP_457193.2| DEHA2B05302p [Debaryomyces hansenii CBS767]
 gi|199429689|emb|CAG85188.2| DEHA2B05302p [Debaryomyces hansenii]
          Length = 540

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 84/222 (37%), Gaps = 17/222 (7%)

Query: 17  FANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             +  L  +   H SI ++              ERLEFLGD +L  L++ ++FN F  A 
Sbjct: 187 INDIKLCNRVFIHKSIINNKSYLHKSELMASHNERLEFLGDSVLNNLVTVIIFNKFPEAS 246

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EGELS   +SLV+  T ++ +        +R + + +    S    I AD+ E+ I AL 
Sbjct: 247 EGELSKIRSSLVNNVTLAEFSILYGFDKKLRSNINDQILKDSTQ-KIYADIFEAYIGALA 305

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT-------ELQEWAHAKFGVTPEYKVTFR 180
           ++   +             +  +   R+ + T       + + ++              +
Sbjct: 306 IERKFDYTEIQQWLTTLMDSRLNKHARQISSTEEINKDAKSELYSLIGTAAFHPQYEVVK 365

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +G      F +   +       G   S + A   AA E LK 
Sbjct: 366 TGDGSSNPFVIRCTMGDDVLGVGTAPSNKDAGLRAAMEALKN 407


>gi|298207213|ref|YP_003715392.1| putative ribonuclease III [Croceibacter atlanticus HTCC2559]
 gi|83849849|gb|EAP87717.1| putative ribonuclease III [Croceibacter atlanticus HTCC2559]
          Length = 247

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 79/205 (38%), Gaps = 6/205 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFN 61
           +S ++  +G+   N    +KA TH S++        ++YERLEFLGD +L  +I+  LF+
Sbjct: 19  FSAIQNLVGFKPTNLKPYKKAFTHRSLNEVDELGNAQNYERLEFLGDAMLSAIIAAHLFS 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EG L+     +VS +  +++ ++LDL S ++ +    +   +   ++   ++ +
Sbjct: 79  AVPGGNEGYLTKMRAKVVSRKHLNELGKDLDLVSLVKTNIPKTQFGANIHGNLFEALIGA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +                V + +        K        ++            Y V   +
Sbjct: 139 IYLDKGYKSCKRFIHERVIEPYVDIEQLENKVISYKSLLIEYCQKT--KKEFHYDVYEDT 196

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDC 206
           G      F V + I     A+    
Sbjct: 197 GVGEMKHFAVKLRIDKKVVAKARAT 221


>gi|195023643|ref|XP_001985724.1| GH20958 [Drosophila grimshawi]
 gi|193901724|gb|EDW00591.1| GH20958 [Drosophila grimshawi]
          Length = 1713

 Score = 80.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 1/101 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R+ L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F H
Sbjct: 1421 INHSALEHNLGYTFRDRAYLLQALTHPSNPTNRLTGCYQELEFVGDAILDFLISAYIFEH 1480

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
                  G+L+   ++LV+  T + +     +  FI   + +
Sbjct: 1481 KTRMTPGQLTDLRSALVNNTTLACICVRHRIHFFILAENAM 1521


>gi|134102537|ref|YP_001108198.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338]
 gi|291007096|ref|ZP_06565069.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338]
 gi|133915160|emb|CAM05273.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338]
          Length = 236

 Score = 80.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 6/195 (3%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL  ALTH S ++        ERLEFLGD +LGL+I+  L+N      EG+L+    
Sbjct: 9   DAELLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVITDRLYNEHPDLPEGQLAKLRA 68

Query: 77  SLVSAET---CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           S+V+       ++   E  L  ++ +             SI AD +E+++ A+YL  GI+
Sbjct: 69  SVVNMHALAGVARGLGEGGLGEYLLLGRGEELTGGRDKASILADGLEAVLGAVYLQDGID 128

Query: 134 VAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           VA   + + ++    ++ +           +   A   +          GPDH   F+  
Sbjct: 129 VARDVIHRLFEPLLTEAPQRGAGLDWKTSLQELTAAAALGVPEYRVEEQGPDHRKEFSAY 188

Query: 193 VEISGLAPAQGMDCS 207
           V ++G    QG   +
Sbjct: 189 VSVAGDTLGQGGGRT 203


>gi|300933883|ref|ZP_07149139.1| ribonuclease III [Corynebacterium resistens DSM 45100]
          Length = 264

 Score = 80.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 4/202 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLL 59
           +   +  L +  G   ++   L  ALTH S ++      + ERLEFLGD +LGL ++  L
Sbjct: 18  NKTDHEPLRQAWGVDISD-DYLCLALTHRSFANENDNLPNNERLEFLGDAVLGLTVAEQL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F +  E E+S     +V+    + VAREL+L   I +     +       SI +D V
Sbjct: 77  YRQFPNRTESEISKMRAGVVNMYALADVARELNLGPNILLGRGEMRTGGDDKHSILSDTV 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+++ A+YL+ G   A   V + +  R  ++         +             +     
Sbjct: 137 EAILGAIYLEHGFATARETVLRIFSDRITEAPTVGLTMDWKTVLVEKLSDLKLGDAVYAS 196

Query: 180 R-SGPDHDPRFTVVVEISGLAP 200
              GP+H+  F   + I+    
Sbjct: 197 HGEGPEHNQTFYAQLAITSKRL 218


>gi|312384317|gb|EFR29067.1| hypothetical protein AND_02261 [Anopheles darlingi]
          Length = 1651

 Score = 80.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 1/105 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    +E+ +GY F NR+ L +A TH++  +++  +SYE+LEFLGD +L  LI+  +F  
Sbjct: 1399 INPEKIERTVGYKFRNRTFLLQAFTHATYTTNTLTKSYEQLEFLGDAVLDFLITLYIFER 1458

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                  G+L+   ++LV+  T + V     L  +I   S +  D 
Sbjct: 1459 NPHMSPGQLTDLRSALVNNVTLACVLVRFRLHHYILSQSPMLTDK 1503



 Score = 41.8 bits (96), Expect = 0.076,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 23   LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
            + +ALT  S       + ER E LGD  L   +S  L     +  EG L+     +VS  
Sbjct: 1177 ILQALT--SKHAHDVFNLERFELLGDAFLKFSVSAFLLMRHVTWHEGYLTTCKGRMVSNR 1234

Query: 83   TCSQVARELDLASFIRVSS 101
                 A +  L    +V  
Sbjct: 1235 NLLYCAMQYGLPGMQKVHR 1253


>gi|167046039|gb|ABZ10551.1| dicer 2 [Nematostella vectensis]
          Length = 1162

 Score = 80.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNH 62
             + +E  +GY F +R +L +ALTH+S   +Y     SYE+LEFLGD +L  L++  +   
Sbjct: 935  LALVEASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYLVTRHVLQR 994

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
            F     G ++   +++V+  + + +  + D    +R  S     V    
Sbjct: 995  FPRLSPGAITDLRSAVVNNYSLACLTIQRDFHKHMRSMSMALFKVVRRF 1043



 Score = 37.2 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +L+ +ALT +S +      +ERLE  GD  +   IS LL++ F +  EG LS      VS
Sbjct: 582 TLILRALTTTSANDII--DHERLEIYGDAFIKYAISELLYSDFPNVNEGRLSFLRGLRVS 639

Query: 81  AETCSQVARELD 92
            +    + R   
Sbjct: 640 NQQLFYLGRSRG 651


>gi|94469430|gb|ABF20205.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271805|gb|ABF69302.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271811|gb|ABF69306.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271844|gb|ABF69328.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 137

 Score = 80.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 73/133 (54%)

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           +L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A    
Sbjct: 1   NLGIFIIMSDGERSCGGAKNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I           +K+ A
Sbjct: 61  VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATGHNKKLA 120

Query: 212 EQVAAAEVLKREG 224
           EQ AA+ +L++  
Sbjct: 121 EQKAASLMLEKIN 133


>gi|284992411|ref|YP_003410965.1| ribonuclease III [Geodermatophilus obscurus DSM 43160]
 gi|284065656|gb|ADB76594.1| ribonuclease III [Geodermatophilus obscurus DSM 43160]
          Length = 270

 Score = 80.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 6/189 (3%)

Query: 28  THSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET-- 83
           TH S ++ +    + ERLEFLGD +LGL+++  L+       EG L+    S+V+  +  
Sbjct: 51  THRSYAYEHGGLPTNERLEFLGDSVLGLVVTDELYQRHPDLPEGRLAKLRASVVNMTSLA 110

Query: 84  -CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
             ++   +  L   + +             SI AD VE++I A+++  G++ A   V + 
Sbjct: 111 GVARRLGDGGLGPHLLLGRGEETTGGRDKDSILADAVEAIIGAVHVGLGLDTAAAIVHRL 170

Query: 143 WKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
           +     ++             +   A+ G+     V   +GPDH   FT  V ++G    
Sbjct: 171 FDPLLDQAATRGAGLDWKTSLQELGARLGLGAPTYVVEDTGPDHAKTFTAAVVLAGTVYG 230

Query: 202 QGMDCSKRA 210
           +G   +K+A
Sbjct: 231 RGAGRTKKA 239


>gi|302308935|ref|NP_986085.2| AFR538Cp [Ashbya gossypii ATCC 10895]
 gi|299790864|gb|AAS53909.2| AFR538Cp [Ashbya gossypii ATCC 10895]
          Length = 485

 Score = 80.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 81/236 (34%), Gaps = 25/236 (10%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              + ++  +  TH S+++               ERLEFLGD IL   ++ +++N F   
Sbjct: 225 EIKDPAIRARVFTHRSLTNDKLYLDEAQMINSHNERLEFLGDSILNTTMTMIIYNKFPGF 284

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIR----VSSDLRKDVCSFMTSIQADVVESL 122
            EG LS     L++ +   + +    L S +R    + +    +V +    + ADV E+ 
Sbjct: 285 NEGRLSQLRTKLINNDRLKEWSFMYQLPSKLRTNIEMFNGTTHEVSNGKLKLYADVFEAY 344

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF--- 179
           I  L  + G +          K       +   +                  Y +     
Sbjct: 345 IGGLVEEDGKKNLPRIRKWLAKLAEPVIQEEIENDVVLENTDEVDVNAKKTLYSLIGYAA 404

Query: 180 ---RSGPDHDPRF-----TVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
                 P H P        V   +  GL    G   + + A   AA EVLK + + 
Sbjct: 405 LNLHYYPVHRPTNNEPYAIVECRVKDGLTLGTGRGKNVKIAGMRAAQEVLKNKKLL 460


>gi|52548547|gb|AAU82396.1| ribonuclease III [uncultured archaeon GZfos17C7]
          Length = 248

 Score = 80.0 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 89/237 (37%), Gaps = 23/237 (9%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDS 65
            LEK IG+ F N +LLE+A+T  S S+ + +S  Y+RLEFLGDR+L L+++  LF    S
Sbjct: 2   ELEKLIGHKFKNIALLEEAITTGSYSNEHPDSSDYQRLEFLGDRVLSLILAEELFKLSKS 61

Query: 66  AKEG--ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           A     +++     L +    ++    + L ++IR +          +  +   +  ++ 
Sbjct: 62  ASLDEGKMTFLKAELENNLRLAEYGENMGLRNYIRANEKREDIRPKVIADVFEAICGAVY 121

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA-----KFGVTPEYKVT 178
                   I+    F+ K+     +K           ++                   V 
Sbjct: 122 QDTKESSRIKEVKKFLLKFDILERIKDEMSSGRGFLPIRNQFENKFREIHRCNPEINFVY 181

Query: 179 FRSGPDHDPRFTVV-VEISGLAPAQGM----------DC---SKRAAEQVAAAEVLK 221
             SG  H  ++ +    I  +    G                SK+ AE  A  +  K
Sbjct: 182 TSSGEGHQTKWKIEKCSIKDILSQTGEYVELKGIKNSGKWFSSKKDAETDAFEQAYK 238


>gi|316976669|gb|EFV59916.1| putative RNase3 domain protein [Trichinella spiralis]
          Length = 1460

 Score = 79.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 5/182 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHS--SISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+RIG  F +  LL +A T      +       +RLEFLGD +L L+ +  L+ H
Sbjct: 783 KLTEFEQRIGVRFNHIRLLARAFTRKCVGYNFLTLGHNQRLEFLGDSVLQLVTTEYLYKH 842

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-MTSIQADVVES 121
           F   +EG LS+  +SLV+  T + +  +L++ +FI       ++         +AD+VE+
Sbjct: 843 FPDHQEGHLSLLRSSLVNNRTQAVICDDLEIPNFILQPPAFLRNEPQELRMKDKADLVEA 902

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            + AL++D  ++    FV   +  R       +   D K++LQ+   A    +       
Sbjct: 903 FLGALFVDHSLDYCAAFVRHCFLPRLKQFIEEQRWCDPKSQLQQCCLALRNPSGAQSTVK 962

Query: 180 RS 181
             
Sbjct: 963 EE 964



 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 84/262 (32%), Gaps = 61/262 (23%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE------------RLEF-------- 45
               ++RI Y+F   SLLE A TH S       + +            +LEF        
Sbjct: 550 LRVFQQRIDYSFRKPSLLELAFTHPSYRADSGTNADHVRNVLNNCGLRQLEFGSKRTNPW 609

Query: 46  -----------------------------------LGDRILGLLISTLLFNHFDSAKEGE 70
                                              LGD ++  L +  LF  F   +EG 
Sbjct: 610 NSRKRGVSCLVNVMSRMGEKKSRASSTVNNERLEYLGDAVIEFLTTIHLFYIFPDLEEGA 669

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+     +V     S++A ++ L  F+  +          M    A+  E+++ A+YLDG
Sbjct: 670 LAPYRTLMVQNSHLSKLAAKMGLDEFMLFAHGPDLCFEEDMRHAMANAFEAILGAVYLDG 729

Query: 131 GIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           G+ VA     ++             +    +  LQ+              T +   + + 
Sbjct: 730 GVHVADRVFGRFLFPPDWNQALHWVWFHPPRHPLQQEYPDGDRHLIHQCPTLQKLTEFEQ 789

Query: 188 RFTVVVEISGLAPAQGMDCSKR 209
           R  + V  + +        +++
Sbjct: 790 R--IGVRFNHIRL-LARAFTRK 808


>gi|328772805|gb|EGF82843.1| hypothetical protein BATDEDRAFT_23044 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1492

 Score = 79.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 84/237 (35%), Gaps = 34/237 (14%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +E  + Y F ++S+L +ALTHSS S S    +Y+RLEFLGD +L  +I+  L+    S+
Sbjct: 1222 RIEAVLNYTFQDKSILWEALTHSSSSFSICGLNYQRLEFLGDAVLSFIITKYLYTQLGSS 1281

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---------------------- 104
              G +S   + +V  +  + V+  L L  ++RV                           
Sbjct: 1282 SPGVISHLKSEMVCNQFLACVSIRLGLIDWLRVKKSDTVWIVDAYAQQVIEHLSQPADSI 1341

Query: 105  ----KDVCSFMTSIQADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154
                    +    I  DV E+++ A+++D         E     + K W     +  +  
Sbjct: 1342 QKIFWAHMTTAPKICGDVYEAILGAIFVDSKFSIEKVDEFVLNSLIKPWWDHFSQIVQDG 1401

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV-VEISGLAPAQGMDCSKRA 210
            +                  +      +        TV  V+       + +   KR 
Sbjct: 1402 KVVLQNSIVELRDLVAEHLKCSAVEYTYTHIQNTATVAIVKCHDKIIGKAIGTGKRD 1458



 Score = 38.4 bits (87), Expect = 0.88,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 4/106 (3%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F N   L+  L  SS       SYERLE LGD  L +  S  LF    S  EG L+   +
Sbjct: 1048 FINIETLQTVLVASS--TDLPYSYERLEILGDSFLKIHQSLHLFALNPSQDEGWLTT--S 1103

Query: 77   SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             +V+ +      R  ++     + +           +   D ++S+
Sbjct: 1104 RMVAEQNLELCRRATEVGLQGLILTTRFSRKQWVPPAKGHDSMQSM 1149


>gi|46132992|ref|XP_389201.1| hypothetical protein FG09025.1 [Gibberella zeae PH-1]
          Length = 1495

 Score = 79.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 88/258 (34%), Gaps = 48/258 (18%)

Query: 14   GYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            GY F +  LL+ A TH S ++     +Y+RLEFLGD ++ + I   L+ +F  A    L+
Sbjct: 1204 GYHFKSAPLLQSAFTHPSYAYSGNVPNYQRLEFLGDALIDMTIVEYLYRNFPLADPQWLT 1263

Query: 73   VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------------------- 111
                ++ S +    +  +L+L   +  ++                               
Sbjct: 1264 EHKMAMASNQFLGCLCVKLNLHHHLLFNTSQFISKIRDYVAELELAEETARQEAEEDGTP 1323

Query: 112  ------------TSIQADVVESLIAALYLDGGIEV------AGTFVDKYWKQRALKSGKF 153
                            AD +E+L+ A+++D   +          F+  Y+K  +L     
Sbjct: 1324 MRMDFWLNATTPPKAYADSIEALMGAMFVDSEFDYSVVEDFFTKFIFPYFKDMSLYDTFA 1383

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV--------VVEISGLAPAQGMD 205
             +   T L +    + G      ++    PD +    V          ++        + 
Sbjct: 1384 NKHPYTFLTKKMQQEIGCMKFCMISDTRVPDAERGMEVMKEYDIYSAFQVHERVITCHVS 1443

Query: 206  CSKRAAEQVAAAEVLKRE 223
             S R  +  AA   L+  
Sbjct: 1444 KSGRYGKIAAAKGALELL 1461



 Score = 43.0 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 12/91 (13%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             +L  +A+T  S                   +YERLEFLGD  L +  +  +F     + 
Sbjct: 1006 PALALEAMTKDSDNTEDHGKQQINFQAGMGSNYERLEFLGDSFLKMATTISIFVLKPKSN 1065

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            E    V    L+        A +  L  +IR
Sbjct: 1066 ECLYHVERMLLICNNNLFNTAVDCKLPEYIR 1096


>gi|195380844|ref|XP_002049171.1| GJ20897 [Drosophila virilis]
 gi|194143968|gb|EDW60364.1| GJ20897 [Drosophila virilis]
          Length = 1722

 Score = 79.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE+ +GY F +R+ L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F H
Sbjct: 1433 INHQHLEQNLGYTFRDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFEH 1492

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
                  G+L+   ++LV+  T + +        F
Sbjct: 1493 KTRMTPGQLTDLRSALVNNTTLACICVRHRFHFF 1526



 Score = 36.4 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 3/125 (2%)

Query: 99   VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158
               +        +     DV+E+LIAA+YLD         V     +  L          
Sbjct: 1596 HVGEFNISHNVDVPKALGDVLEALIAAVYLDCRDLTTTWQVVYRLFEPELLEFSRNVPLN 1655

Query: 159  TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
               Q + H     T    +   +      +F     +       G   + + A+  AA  
Sbjct: 1656 PIRQLFEHKLAKPTFSPPIMDNNQVMVTCQFIC---MDKTIKVYGFGNNGKQAKLSAAKH 1712

Query: 219  VLKRE 223
             L++ 
Sbjct: 1713 ALQKL 1717


>gi|94469421|gb|ABF20199.1| ribonuclease III [Ehrlichia ruminantium]
 gi|94469427|gb|ABF20203.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 145

 Score = 79.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 75/136 (55%)

Query: 89  RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
           + ++L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A 
Sbjct: 6   QSINLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSAT 65

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                 +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I+          +K
Sbjct: 66  HMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATGHNK 125

Query: 209 RAAEQVAAAEVLKREG 224
           + AEQ AA+ +L +  
Sbjct: 126 KLAEQKAASLMLAKIN 141


>gi|50312305|ref|XP_456185.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49645321|emb|CAG98893.1| KLLA0F24816p [Kluyveromyces lactis]
          Length = 478

 Score = 79.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 75/226 (33%), Gaps = 21/226 (9%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              N  +  +   H S+ +           +   ERLEFLGD IL   ++T+++N F   
Sbjct: 197 KIKNPVIRARVFIHKSMINDKLYLTDQEIIRSHNERLEFLGDSILNTTMTTIIYNKFPHF 256

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS     L++ E   + +        ++  +    D       + ADV E+ I  L
Sbjct: 257 DEGQLSQLRMRLINNELLKEWSFLYKFPDELKTHNVKPDDNKDGKQKLYADVFEAYIGGL 316

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF------R 180
             D G +          K       K      T               Y +         
Sbjct: 317 VEDNGKKNLPKIRKWLAKLAEPVISKGLNSDITLENTTEVDVNAKKTLYSLIGYAALNLH 376

Query: 181 SGPDHDPRFT-----VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220
             P H P  T     V   I  G    +G+  + + A   AA +VL
Sbjct: 377 YYPVHKPTSTDPNAIVECRITGGKVLGRGVGKNIKIAGMRAAEDVL 422


>gi|323451297|gb|EGB07175.1| hypothetical protein AURANDRAFT_6264 [Aureococcus anophagefferens]
          Length = 227

 Score = 79.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 72/201 (35%), Positives = 101/201 (50%), Gaps = 7/201 (3%)

Query: 26  ALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           ALTH S  +H+    +ERLEFLGDR+LGL+++  L +H+    EGE  +R + LV  E  
Sbjct: 21  ALTHPSTGAHASTGRFERLEFLGDRVLGLVVAEWLHDHYPDEDEGESQIRHSGLVRTEAL 80

Query: 85  SQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
             VA  L L   +R  S  L     +   ++ AD +E+++ A+++DGG   +   V K W
Sbjct: 81  VAVAGGLRLDGHVRAKSHGLWVSRSNSNDTMVADALEAIVGAVFVDGGYAASKRVVLKAW 140

Query: 144 KQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-- 199
                   +    RD KT LQE A       P Y+   ++GPDHDP  TV          
Sbjct: 141 APLLAKADATPPLRDPKTRLQEHAQKHKRPLPTYETIRKTGPDHDPTITVQAHYGDRTAN 200

Query: 200 -PAQGMDCSKRAAEQVAAAEV 219
             A+GM  SKRAA   AA  +
Sbjct: 201 ATAKGMHPSKRAASMAAAKIL 221


>gi|241858001|ref|XP_002416132.1| ribonuclease III, putative [Ixodes scapularis]
 gi|215510346|gb|EEC19799.1| ribonuclease III, putative [Ixodes scapularis]
          Length = 778

 Score = 79.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +    E+  G  F +  LL KA TH S   ++    S +RLEFLGD +L L+ S  L+ +
Sbjct: 573 KLHEFEELTGIEFTHIRLLAKAFTHRSIGFNNLTLGSNQRLEFLGDTVLQLVASEYLYKY 632

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
           F    EG LS+  +SLV+  T + V  +L +  F      
Sbjct: 633 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMVEFTIYPYP 672



 Score = 35.7 bits (80), Expect = 5.4,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A+ +  +   
Sbjct: 419 SHNERLEFLGDAVVEFLSSIHLFFMFPDLEEGGLATYRAAIVQNQHLAVLAKVILHSKVF 478

Query: 98  RV 99
             
Sbjct: 479 TH 480


>gi|255933596|ref|XP_002558177.1| Pc12g13700 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582796|emb|CAP80997.1| Pc12g13700 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1393

 Score = 79.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 1/126 (0%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLF 60
            + + +  L   IGY F + +LL +ALTH+S  +    +SY+RLEFLGD +L +++  ++ 
Sbjct: 1102 NLINHHRLAGLIGYTFNDPALLTEALTHASCEYDTSTQSYQRLEFLGDAVLDMVVMAVIA 1161

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             H     +G +++  +S+V+A   +    EL         +       + +       + 
Sbjct: 1162 GHPVEMDQGPMTLLKHSVVNANLLAFFCMELCAPDEPSHVTQFTNGGINLVPRYDQIHLW 1221

Query: 121  SLIAAL 126
              + + 
Sbjct: 1222 RFLRSH 1227



 Score = 36.4 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
            G    + + +  A++          +Y+R EF GD +L   +S  LF    +  EG LS 
Sbjct: 937  GVGIKDIAHVITAISAP--IAQASTNYQRYEFFGDSVLKFTVSCQLFFRNGNWHEGYLSE 994

Query: 74   RFNSLVSAETCSQVARELDLASF 96
              + L+     ++ A +L + SF
Sbjct: 995  SRDKLIQNSRLARAALDLGIDSF 1017


>gi|302794558|ref|XP_002979043.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii]
 gi|300153361|gb|EFJ20000.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii]
          Length = 1686

 Score = 79.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              +LE ++ Y F NRSLL +A+TH+S   +    Y+RLEFLGD +L  L+S  LF     
Sbjct: 1492 LESLEHKLQYKFQNRSLLVEAITHAS-QPNCLLCYQRLEFLGDGVLDFLVSRHLFETHPG 1550

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               G L+   ++ V+ +  +++     L   ++  S               +  ++  
Sbjct: 1551 LPPGTLTDLRSAAVNNKWFARLVVRHGLHQHLQHGSVELDCEIRKFVQNVKEKPDASC 1608


>gi|209527991|ref|ZP_03276474.1| Ribonuclease III [Arthrospira maxima CS-328]
 gi|209491588|gb|EDZ91960.1| Ribonuclease III [Arthrospira maxima CS-328]
          Length = 246

 Score = 79.2 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 7/210 (3%)

Query: 5   RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   L +R+G +   +    LL+ ALTH S+S   Q++YE+LEF+GD ++ L+ S LL  
Sbjct: 15  QLEKLIERLGLSTQQKIAWQLLDLALTHPSVS--TQDNYEQLEFVGDSVVRLVASELLLE 72

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--LRKDVCSFMTSIQADVV 119
            + +A  GE +   + LVS    ++++    L  ++ V       +       +   + V
Sbjct: 73  TYPNAPVGEFAAVRSILVSDRILAEISNSYGLGRYLLVGGSATRDRLGEESRLADCFEAV 132

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            + +        +           +   + +   R++ K  LQEW  + + + P+YKV  
Sbjct: 133 LAALYLSTNTLELIRPWLDQHLLERATDIFNDPARQNYKAALQEWTQSCYKILPQYKVNE 192

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                 + RFT  V + G     G   + +
Sbjct: 193 TGYAGDEARFTASVWLRGEQLGTGTGRTIK 222


>gi|213408108|ref|XP_002174825.1| dicer [Schizosaccharomyces japonicus yFS275]
 gi|212002872|gb|EEB08532.1| dicer [Schizosaccharomyces japonicus yFS275]
          Length = 1384

 Score = 78.8 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 89/259 (34%), Gaps = 45/259 (17%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
            LE  +GY F +  LL+ A TH+S   + Q   +Y++LEFLGD +L  ++   LF  + + 
Sbjct: 1107 LESLVGYTFKHPGLLKIAFTHASYVKTTQTAVNYQQLEFLGDAVLDFIVVRYLFKKYQNK 1166

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------------- 111
               EL+   +  V  ++ + V+ +L L  F+   ++  ++                    
Sbjct: 1167 TAAELTDTKSFYVCNKSLAYVSFKLGLYDFMLQDNEDIRNAYKEYKSVIDKLQQDTKIDS 1226

Query: 112  ---------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
                               +D+ ES + A+YLD G + +       +    L   +   +
Sbjct: 1227 NHPTPSEKFWLLIEPPKFLSDIFESFVCAVYLDSGFQFSALEPFLKFLVEELGDYEGVFN 1286

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDP------------RFTVVVEISGLAPAQGM 204
                  +          +         D +              +   + I         
Sbjct: 1287 EPPVFSQINQHLQKQGCKQYKFQCVIIDEEEKSDLLYTKAVTHHYEYSLIIHDEIVCSAK 1346

Query: 205  DCSKRAAEQVAAAEVLKRE 223
              +K+ ++++ +   LK  
Sbjct: 1347 ALNKKNSQKLLS-LALKEL 1364


>gi|213409700|ref|XP_002175620.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces
           japonicus yFS275]
 gi|212003667|gb|EEB09327.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces
           japonicus yFS275]
          Length = 377

 Score = 78.8 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 79/218 (36%), Gaps = 13/218 (5%)

Query: 18  ANRSLLEKALTHSSISHSYQES-----------YERLEFLGDRILGLLISTLLFNHFDSA 66
            +  L ++   H S ++    +            ERLEFLGD       + L++  F   
Sbjct: 154 KSSKLEKQVFMHISRAYELYPNHSNSQDLLSVHNERLEFLGDSFFNFYTTRLIYERFAEL 213

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS   + LV  ET  + AR       + +S    KD       + AD  E+ + AL
Sbjct: 214 NEGELSKLRSKLVGNETAEKYARLYGFDKRLVLSVSAEKDELREAKKVIADTFEAYLGAL 273

Query: 127 YLDGG-IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
            LDG   E           +          D + + + +   K     EY      G   
Sbjct: 274 ALDGQEREAYRWVRRLTEPKLRETVVDGPIDKRAKAKLYHRYKHQGFIEYAWVDGKGGSS 333

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           D  + V  + +G   A+    +++ A   AA + L+  
Sbjct: 334 DG-YVVACKFNGDEIARSWGANQKDAGARAAMKALEIL 370


>gi|328849595|gb|EGF98772.1| hypothetical protein MELLADRAFT_79606 [Melampsora larici-populina
            98AG31]
          Length = 1540

 Score = 78.8 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 88/259 (33%), Gaps = 42/259 (16%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            + L+ +IGY F    LL +ALTH S        YER E+LGD I+ L I+   +  F  +
Sbjct: 1108 TALQHKIGYEFKQPLLLMQALTHRSADSFLTNCYEREEWLGDAIVDLWITEHCYRRFSDS 1167

Query: 67   KEGELSVRFNSLVSAET-CSQVARELDLASFIRVSSDL---------------------- 103
               +L+    SLV+  +      ++L L   I+  S                        
Sbjct: 1168 TAAQLTFTRASLVTNASLGYLSLKKLGLHKMIQHDSRHFEKACDDALRDIESFIEVGSFY 1227

Query: 104  ----RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT 159
                   +      I  D +E+++ A+++D G+ ++  +         +     + + + 
Sbjct: 1228 DNLTNSFIVFDPPKILGDALEAIVGAIFIDCGLHLSVAYRSLDKIFEDVLPRLKQDEPRD 1287

Query: 160  ELQEWAHAKFGVTPEY---------KVTFRSG----PDHDPRFT-VVVEISGLAPAQGMD 205
             +      +                +    SG     D    F    V + G   A G  
Sbjct: 1288 PISLLLRTRDTYCCSELGRVTEHVVEKKETSGIRDNEDECESFRLCKVSLHGKVIATGRH 1347

Query: 206  C-SKRAAEQVAAAEVLKRE 223
              S   AEQ A+    +  
Sbjct: 1348 RTSNTVAEQRASLNAYELL 1366



 Score = 39.5 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             A +   L K+I     +  L   ALT           Y+ LE +GD  L L  S  ++ 
Sbjct: 918  DASQVQALLKKIDVPHVSLDLATMALTQP--GIDVPWDYQTLETVGDAFLKLATSVHVYL 975

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
                  EG++S   +  V  E     + +  L S+
Sbjct: 976  SHTKKGEGDMSALRSKSVDNEYLRSKSLQAGLGSY 1010


>gi|115387529|ref|XP_001211270.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114195354|gb|EAU37054.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1344

 Score = 78.8 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 3/104 (2%)

Query: 2    SALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
            S +     +E+++GY F    LL  A TH S   ++     Y+ LEFLGD +L ++    
Sbjct: 1204 SEIDLCRRVEEKLGYHFRYPRLLHSAFTHPSYPSAWARVPCYQSLEFLGDALLDMVCVED 1263

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
            LF  F       L+    ++VS +    +A +L L + +   S 
Sbjct: 1264 LFRRFPDRDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLSYFSS 1307



 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 13/100 (13%)

Query: 11   KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58
            K++G   +      +ALT        H S    +     ++YERLEFLGD  L +  S  
Sbjct: 1005 KKLGLEIS-LEYALEALTKDSDNTHEHRSQQVHMQRGMGKNYERLEFLGDCFLKMATSIS 1063

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            LFN      E +  V    L+        A + +L  FIR
Sbjct: 1064 LFNQHPDDNEFDYHVNRMCLICNRNLFNSAVKKELYQFIR 1103


>gi|94469415|gb|ABF20195.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 138

 Score = 78.4 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 49/134 (36%), Positives = 74/134 (55%)

Query: 91  LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
           ++L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A   
Sbjct: 1   INLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHM 60

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
               +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I+          +K+ 
Sbjct: 61  KVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATGHNKKL 120

Query: 211 AEQVAAAEVLKREG 224
           AEQ AA+ +L +  
Sbjct: 121 AEQKAASLMLAKIN 134


>gi|163754630|ref|ZP_02161752.1| putative ribonuclease III [Kordia algicida OT-1]
 gi|161325571|gb|EDP96898.1| putative ribonuclease III [Kordia algicida OT-1]
          Length = 244

 Score = 78.4 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 77/205 (37%), Gaps = 6/205 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           ++ LE  +G+    + + +KA TH S+    +     +YERLEFLGD +L  +IS  LF 
Sbjct: 19  FAELEDILGFKTKRKKIYKKAFTHRSMNKKDAKGNSVNYERLEFLGDAMLSSVISAYLFT 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              S  EG L+   + +VS E  +++ R+L L   ++          +   ++   ++ +
Sbjct: 79  EVPSGNEGYLTKMRSKIVSREHLNELGRDLKLIDLVQSRIPKDNFGENIHGNLFEALIGA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +                V   +       GK        ++           +Y V   +
Sbjct: 139 IFLDKGYKYCERFIHYRVISPYVDIERLEGKVISYKSLLIEWCQKE--KKNFKYDVYEDT 196

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDC 206
           G D    F V + I      +    
Sbjct: 197 GNDELKHFAVKLFIDNRVVGKARAT 221


>gi|254584338|ref|XP_002497737.1| ZYRO0F12342p [Zygosaccharomyces rouxii]
 gi|238940630|emb|CAR28804.1| ZYRO0F12342p [Zygosaccharomyces rouxii]
          Length = 456

 Score = 78.4 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 75/230 (32%), Gaps = 24/230 (10%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              + ++  +   H S              +   ERLEFLGD +L  +I+ +++N F   
Sbjct: 185 EIKDPAVRARVFIHKSTIKDKLYLTESEMIKAHNERLEFLGDSVLNTVITMIIYNKFPRY 244

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQADVVESLI 123
            EG+LS    +LVS E   +      L   +R + D+ K+  +F      + ADV E+ I
Sbjct: 245 TEGQLSKLRMTLVSNERLKEWTFMYGLEKKLRTNFDMTKENANFQQGKRKLYADVFEAYI 304

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK----------TELQEWAHAKFGVTP 173
             L  D              K       +                   ++          
Sbjct: 305 GGLIEDDPKHNMPRVRKWLSKLAKPVMDEVTVKDVGLESTEDLDLNAKRQLYSLIGFAAL 364

Query: 174 EYKVTFRSGPDH-DPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221
                    P + DP   V   +  G     G   + + A   AA  VLK
Sbjct: 365 NLHYVTVKRPTNTDPNTVVECRVGDGTVLGSGEGRNIKIAGLKAAQNVLK 414


>gi|100271817|gb|ABF69310.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 137

 Score = 78.4 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 73/133 (54%)

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           +L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A    
Sbjct: 1   NLGIFIIMSDGERSCGGAKNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I           +K+ A
Sbjct: 61  VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATGHNKKPA 120

Query: 212 EQVAAAEVLKREG 224
           EQ AA+ +L++  
Sbjct: 121 EQKAASLMLEKIN 133


>gi|321469997|gb|EFX80975.1| hypothetical protein DAPPUDRAFT_303691 [Daphnia pulex]
          Length = 355

 Score = 78.4 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 69/231 (29%), Gaps = 18/231 (7%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ--------------ESYERLEFLGDRILGL 53
               R+G  F N + L  ALTH S                    ++ E L   G  ++  
Sbjct: 81  AFSNRLGEKF-NEATLRTALTHKSYVERETARLSDIGVDSYLQIQNNEELAVAGGALISK 139

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
             +  L   F    E  +    + L S      V + + L   +                
Sbjct: 140 FTNGYLRAVFTRVPEELIMAMHDFLTSTSNLEIVGKHIGLGDLMLC--SDFPCESETYVK 197

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
               VV +L  +   +         V        +       D    L +    +    P
Sbjct: 198 SLKAVVAALAESSGEERARIFVQDLVVTQLYGLDINELWNPADPVGNLTDILKREGKAEP 257

Query: 174 EYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           E+++   SG +     + V V       A+G   S   A+++AA E LK+ 
Sbjct: 258 EFRLIKHSGQNSVLAVYYVGVYSDKNFIAEGAGESLEIAKEMAAREALKQL 308


>gi|259481091|tpe|CBF74306.1| TPA: nucleolar RNAse III, putative (AFU_orthologue; AFUA_5G04440)
           [Aspergillus nidulans FGSC A4]
          Length = 355

 Score = 78.4 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 67/216 (31%), Gaps = 11/216 (5%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
             +  L     TH  ++   + +Y+RLE LGD  + L+ + L++N F     G +S    
Sbjct: 122 IKDDRLERAVFTHPGVAKDSRTTYDRLEILGDAYIELISTKLIWNKFQHIPSGRISQIRE 181

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            LV  ET ++ A +  +            +        + D+ E+ +AA+ L      + 
Sbjct: 182 LLVKNETLAEYATQYGIDK-KASVPAELYNQPKRWIKTKGDIFEAYVAAVILSHPDGYSV 240

Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD-----HDPRFTV 191
                               +  + +E    K                         F +
Sbjct: 241 AETWLSELWSPKLDSFEGSVSTFQAKEALAKKINGRGAKLRYIDEKESVQHQGGTQTFFI 300

Query: 192 VVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            V       +      G   +K  A   AA + L+ 
Sbjct: 301 GVYFTGWGWNNKHLGSGQGSNKTIAGDRAAQQALEN 336


>gi|328770756|gb|EGF80797.1| hypothetical protein BATDEDRAFT_24696 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1641

 Score = 78.0 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 1/115 (0%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
              +E++IGY F +++LL +ALTH S +      ++RLEFLGD +L  L    L+      
Sbjct: 1290 KQIEEQIGYTFRDKTLLWEALTH-SGTGKLGSMFQRLEFLGDAVLSYLAMQHLYKITPPL 1348

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              G LS     LV  +  + V+ ++ L  +IR +    +      T+     + S
Sbjct: 1349 NPGGLSKLRAELVCNQFLACVSIQIGLVKYIRHTDMTMEAAIGRFTAWVQGYLAS 1403



 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 54/171 (31%), Gaps = 12/171 (7%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
              LL+ A T  S + +   SYERLE LGD  L +  S  LF       EG ++ +   + 
Sbjct: 1118 PKLLQIATT--SSASNMGYSYERLETLGDSFLKIHQSLHLFCRNPFKNEGWMTQQRIKIE 1175

Query: 80   SAETCSQVARELDLASF----------IRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
              +   Q A +  L  F              +   +          A  +E++I A   +
Sbjct: 1176 KNQVLHQKALDAGLQHFILTKPLTKRNWVPPAKNIRLNQEISNKTLAGSIEAVIGACVEE 1235

Query: 130  GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            GG+E A   V +                     + + +             
Sbjct: 1236 GGVEQAALAVSRLLSDEYETDWSNYHHDLYTSIQASPSSTDYYESVVHVDP 1286


>gi|212537171|ref|XP_002148741.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224]
 gi|210068483|gb|EEA22574.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224]
          Length = 1431

 Score = 78.0 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 74/222 (33%), Gaps = 22/222 (9%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   +E+ +GY F   S+L +ALTH S S+    +Y+RLEFLGD +L   +    FNH +
Sbjct: 1127 KLGQMEEMLGYKFNKPSILFEALTHPS-SNDGAPTYQRLEFLGDSLLDHFVVQEFFNHPE 1185

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                 E+ +   ++V+A     + + L    +I               S  +   +  + 
Sbjct: 1186 KLSHQEMHLMRTAVVNAHFLGFLCQSL----YITEQRTEPVSPGKAHLSTISTDHKLYL- 1240

Query: 125  ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
                   +    ++     +Q      +    A  +    +              +   D
Sbjct: 1241 ----WQLMRHGASWEVMNAQQETKTRYEAWGSAVHDALNHSKTYPWAALFRINASKFFSD 1296

Query: 185  HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
                  V   I G                  + + L+R G+ 
Sbjct: 1297 -----MVE-SILGAIFVDSRGS------MDVSRQFLERIGVL 1326



 Score = 43.8 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F+N + +  A++ SS        Y+R EFLGD +L L+ S  L  +     EG LS   +
Sbjct: 958  FSNLAHVLTAISASSAHEEN--DYQRYEFLGDSLLKLITSIHLVVNNPLWHEGMLSAAKD 1015

Query: 77   SLVSAETCSQVARELDLASF 96
            ++VS     + A  L L  F
Sbjct: 1016 TIVSNGRLYRTALNLGLDRF 1035


>gi|156044530|ref|XP_001588821.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980]
 gi|154694757|gb|EDN94495.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1515

 Score = 78.0 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 57/109 (52%), Gaps = 1/109 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            +    +E+ + Y F  +SLL +A+TH S  +   +S ERLEFLGD IL  +I T ++++ 
Sbjct: 1180 IALQPIEQILAYTFTKKSLLVEAMTHPSYING-TQSLERLEFLGDAILDNIIVTAMWSYE 1238

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
                  ++ +  ++LV+A+  + +  E+ +  ++   ++ +        
Sbjct: 1239 TELSHFQMHLLRSALVNADFLAFLCMEMSIEQYVTDLTEGKDHQIHETH 1287



 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 6    YSTLEKRI--GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
               L K I      ++R L++ A+TH+S S     +Y+RLEFLGD IL L  S  L + +
Sbjct: 1000 VDRLCKTILKDLEISDRGLVQTAITHASYS--LTSNYQRLEFLGDSILKLCTSVQLISEY 1057

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                EG LS   + +VS    S+ A EL L  +I 
Sbjct: 1058 PLWPEGYLSAMKDRIVSNSRSSRAAVELGLDEYII 1092


>gi|242090101|ref|XP_002440883.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor]
 gi|241946168|gb|EES19313.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor]
          Length = 377

 Score = 78.0 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 94/240 (39%), Gaps = 30/240 (12%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +E+ + Y F +R+LLE+ALTH S S     SY+RLEF+GD  LGL  S  L+    +  
Sbjct: 44  RVERLLRYQFCDRALLEEALTHQSFSDG-AFSYQRLEFVGDAALGLAFSNFLYLTNPTLG 102

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL----------------------RK 105
            G LS    + +S E  ++VA   DL   +R                             
Sbjct: 103 PGALSTLRAANISTEKLARVAVRHDLYPLLRRKCARLDLLVGQFIESVKQEVMHDLATAP 162

Query: 106 DVCS--FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
              S      + AD+VE++ AA+Y+D   ++   +    W    + + +   +       
Sbjct: 163 YGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPVITAETVDEQPVTTLH 222

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               K G   +++   + G        V V + G     G    K  A+  AA + L + 
Sbjct: 223 ELCQKHGKVAQFETWQKGGMT-----MVNVFVGGEMVGLGSSEQKVIAKLNAARDALGKL 277



 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS---GLAPAQGMDCSK-RA 210
           R+ K +L E    K    P +K+    GP H+  F   V++    G     G   S+ + 
Sbjct: 302 RECKQKLTEQCIGKHWPKPIFKLEKEGGPAHERNFVCSVQVDTKTGTFVTIGDPMSRVKD 361

Query: 211 AEQVAAAEVLKRE 223
           AE  AA ++++  
Sbjct: 362 AENSAAQKMVELL 374


>gi|251765118|sp|Q6ATG6|RTL2_ORYSJ RecName: Full=Ribonuclease 3-like protein 2; AltName:
           Full=Ribonuclease III-like protein 2; Short=RNase
           III-like protein 2
          Length = 317

 Score = 78.0 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 96/241 (39%), Gaps = 30/241 (12%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +E+ + Y F +  LLE+ALTH S +     SY+RLEF+GD  LGL  S  L+    + 
Sbjct: 38  ARVERLLRYQFRDGRLLEEALTHQSFADDAV-SYQRLEFVGDSALGLAFSNFLYLTNPTL 96

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---------------------- 104
             G LS    + +S E  ++VA   DL   +R +                          
Sbjct: 97  GPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTV 156

Query: 105 KDVCS--FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
               S      + AD+VE++ AA+Y+D   ++   +    W    + + +   +    + 
Sbjct: 157 PYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDEQPVTML 216

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                K G   ++K   + G        V V ++G     G    K  A+  AA +  ++
Sbjct: 217 HELCQKHGKMAQFKTWQKGGMT-----VVNVFVAGELVGIGSSEQKVIAKLNAARDATRK 271

Query: 223 E 223
            
Sbjct: 272 L 272


>gi|86608239|ref|YP_477001.1| ribonuclease III [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556781|gb|ABD01738.1| ribonuclease III [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 240

 Score = 78.0 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 85/216 (39%), Gaps = 18/216 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEK--------ALTHSSISHSYQESYERLEFLGDRILGLLIST 57
              L  R+G  F + +LLE+        AL H S+    + + +RLE LGD +L +L++ 
Sbjct: 12  LEHLLARLG--FRDPALLEQLRWDLLDQALIHPSL--DGRRNNDRLELLGDSVLRILVTE 67

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  +     GEL+   + L S    +++A    L  ++ V S  + D+      +   
Sbjct: 68  FLFQSYPHLSVGELTAIRSDLTSDAYLAELADLHGLDRYLEVGSSSQNDLAGRGRRLADA 127

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQR----ALKSGKFRRDAKTELQEWAHAKFGVTP 173
               L A     G   +                       RR+ K  LQE     +G  P
Sbjct: 128 FEALLGAFYLSWGIYTLPRLHPWLDPYLHRRVEQWFQDPTRRNPKAALQELTQRLWGSLP 187

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           EY++      +H P FT+ V   G    +G   SK+
Sbjct: 188 EYRLVAAQ--EHPPHFTMEVWGQGRCWGRGEGRSKK 221


>gi|225447097|ref|XP_002270948.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 236

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 1/97 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              +E+ +GY+F N+ LLE+A TH+S     Q SYERLEF+GD +L LLI+   F  +  
Sbjct: 30  LEGVEQILGYSFTNKRLLEEAYTHASCQK-NQFSYERLEFMGDSVLSLLITKEQFFLYPD 88

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
            + G L+   ++ V  E  ++VA +  L  F+R    
Sbjct: 89  LQPGRLTRLRSANVDKEKLARVALKHGLHRFLRHKKP 125


>gi|322702026|gb|EFY93774.1| Dicer-like protein 1 [Metarhizium acridum CQMa 102]
          Length = 1524

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 1/102 (0%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDS 65
              +E  IGY F +  LL  A  H S  +  +  +Y+RLEFLGD +L + I   LF  +  
Sbjct: 1246 DKVEGSIGYKFRSPKLLRSAFKHPSYPYEPELPNYQRLEFLGDALLDVAIVDFLFRRYPL 1305

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
            A    L+    ++ S    S +  EL L   I  +       
Sbjct: 1306 ADPQWLTEHKMAMASNHFFSFLCVELGLHRHILSTGSSMMGH 1347



 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 22   LLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            L  +ALT  S   +     ++YERLEFLGD  L +  +  LF    +  E E  V    L
Sbjct: 1067 LALEALT-KSEEDVDVQSNKNYERLEFLGDAFLKMATTISLFTLIPNKNEFEYHVERMIL 1125

Query: 79   VSAETCSQVARELDLASFIR 98
            +  +     A +  L  ++R
Sbjct: 1126 ICNKNLFNHAVDRGLQEYVR 1145


>gi|195124758|ref|XP_002006854.1| GI21295 [Drosophila mojavensis]
 gi|193911922|gb|EDW10789.1| GI21295 [Drosophila mojavensis]
          Length = 1728

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LEK +GY F +R+ L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F H
Sbjct: 1438 INHQYLEKNLGYTFCDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFEH 1497

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
                  G+L+   ++LV+  T + +        F
Sbjct: 1498 KTRMTPGQLTDLRSALVNNTTLACICVRHRFHFF 1531



 Score = 36.8 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/108 (10%), Positives = 27/108 (25%), Gaps = 17/108 (15%)

Query: 116  ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
               + +    +Y     E+     +                         + +  VT ++
Sbjct: 1633 CRDLNTTWQVVYKLFEPELLEFSRNVPLNPIRQLFEHKLAKPTFSSPVMDNNQVMVTCQF 1692

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                +         T+ V         G   + + A+  AA   L++ 
Sbjct: 1693 ICMDK---------TIKVY--------GFGNNGKQAKLSAAKHALQKL 1723


>gi|50290469|ref|XP_447666.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526976|emb|CAG60603.1| unnamed protein product [Candida glabrata]
          Length = 734

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 77/232 (33%), Gaps = 25/232 (10%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              N ++  +   H S              + SYERLEFLGD ++  +++T+++  F + 
Sbjct: 423 EIKNEAIKARVFIHQSALSGQSYLTEEEKIKNSYERLEFLGDSVINSIMTTIIYKSFPNY 482

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASF---IRVSSDLRKDVCSFMTSIQADVVESLI 123
             G+++     LVS     + A    L       +   +   +  S +  I AD+ E+ +
Sbjct: 483 DAGQMTRLRVLLVSNRRLEKWAYLYGLQKHLLIRKSILNEMLNSGSKVYKIYADLFEAYV 542

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG- 182
             L  D          D                      +        T   K+    G 
Sbjct: 543 GGLVEDDPTGNMPKIRDWLSTLAEEAIKTISDKNALPGTDNNINMNAKTQLEKLLAPVGL 602

Query: 183 ----------PDHDPRFTV-VVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                           FTV    + +G     G   + + AEQ+AA  +L++
Sbjct: 603 EAQYVITNRRSSKKSPFTVIECRVANGQVTGIGKGRNYKIAEQIAAGNILEK 654


>gi|887620|emb|CAA90210.1| unknown [Saccharomyces cerevisiae]
          Length = 362

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 24/230 (10%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              + ++  +   H S                  ERLEFLGD IL  +++ +++N F   
Sbjct: 95  EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 154

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQADVVESLI 123
            EG+LS    +LVS E   Q +   +    ++ + DL+ +  +F      + ADV E+ I
Sbjct: 155 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 214

Query: 124 AALYLDGGIEVAGTFVDKYWK----------QRALKSGKFRRDAKTELQEWAHAKFGVTP 173
             L  D              K          +  +   K  +      ++        + 
Sbjct: 215 GGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLIGYASL 274

Query: 174 EYKVTFRSGP-DHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221
                    P   DP   V   +  G     G+  + + A   AA   L+
Sbjct: 275 RLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 324


>gi|6323895|ref|NP_013966.1| Rnt1p [Saccharomyces cerevisiae S288c]
 gi|2500557|sp|Q02555|RNT1_YEAST RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|1185416|gb|AAB04172.1| Rnt1p [Saccharomyces cerevisiae]
 gi|151945944|gb|EDN64176.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|190408465|gb|EDV11730.1| ribonuclease III [Saccharomyces cerevisiae RM11-1a]
 gi|256271587|gb|EEU06629.1| Rnt1p [Saccharomyces cerevisiae JAY291]
 gi|285814244|tpg|DAA10139.1| TPA: Rnt1p [Saccharomyces cerevisiae S288c]
 gi|323303453|gb|EGA57248.1| Rnt1p [Saccharomyces cerevisiae FostersB]
 gi|323332152|gb|EGA73563.1| Rnt1p [Saccharomyces cerevisiae AWRI796]
          Length = 471

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 24/230 (10%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              + ++  +   H S                  ERLEFLGD IL  +++ +++N F   
Sbjct: 204 EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 263

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQADVVESLI 123
            EG+LS    +LVS E   Q +   +    ++ + DL+ +  +F      + ADV E+ I
Sbjct: 264 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 323

Query: 124 AALYLDGGIEVAGTFVDKYWK----------QRALKSGKFRRDAKTELQEWAHAKFGVTP 173
             L  D              K          +  +   K  +      ++        + 
Sbjct: 324 GGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLIGYASL 383

Query: 174 EYKVTFRSGP-DHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221
                    P   DP   V   +  G     G+  + + A   AA   L+
Sbjct: 384 RLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 433


>gi|169608916|ref|XP_001797877.1| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15]
 gi|160701743|gb|EAT85008.2| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15]
          Length = 1017

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 1/113 (0%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNH 62
           +    LE  IGY F  + LL +ALTH+S S  +   SYERLEFLGD +L  +IS  L  H
Sbjct: 710 MGLDVLETLIGYTFKKKPLLLEALTHASFSGPHVHCSYERLEFLGDAVLDYIISKRLHAH 769

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
                  ++     + V+A   +    E  +       + +R +         
Sbjct: 770 SPELSHQKMHAIRTATVNASFLAFRLFETTIDEETINKTSMRPESQKRAIWQF 822



 Score = 51.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LL +AL   S +    ++Y+RLEFLGD IL  + +  L        E  L+ +   +VS 
Sbjct: 548 LLTRAL--KSSAADGNDNYQRLEFLGDCILKFIATVHLMAANPKWPESHLTAKKGRIVSN 605

Query: 82  ETCSQVARELDLASFIR 98
              ++      L  F+ 
Sbjct: 606 GFLARATIAAGLDRFMI 622


>gi|158705946|sp|Q0UL22|DCL2_PHANO RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease DCL2; Includes: RecName:
            Full=ATP-dependent helicase DCL2
          Length = 1399

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 1/113 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNH 62
            +    LE  IGY F  + LL +ALTH+S S  +   SYERLEFLGD +L  +IS  L  H
Sbjct: 1092 MGLDVLETLIGYTFKKKPLLLEALTHASFSGPHVHCSYERLEFLGDAVLDYIISKRLHAH 1151

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
                   ++     + V+A   +    E  +       + +R +         
Sbjct: 1152 SPELSHQKMHAIRTATVNASFLAFRLFETTIDEETINKTSMRPESQKRAIWQF 1204



 Score = 51.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 22   LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
            LL +AL   S +    ++Y+RLEFLGD IL  + +  L        E  L+ +   +VS 
Sbjct: 930  LLTRAL--KSSAADGNDNYQRLEFLGDCILKFIATVHLMAANPKWPESHLTAKKGRIVSN 987

Query: 82   ETCSQVARELDLASFIR 98
               ++      L  F+ 
Sbjct: 988  GFLARATIAAGLDRFMI 1004


>gi|323347050|gb|EGA81326.1| Rnt1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 441

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 24/230 (10%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              + ++  +   H S                  ERLEFLGD IL  +++ +++N F   
Sbjct: 204 EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 263

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQADVVESLI 123
            EG+LS    +LVS E   Q +   +    ++ + DL+ +  +F      + ADV E+ I
Sbjct: 264 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 323

Query: 124 AALYLDGGIEVAGTFVDKYWK----------QRALKSGKFRRDAKTELQEWAHAKFGVTP 173
             L  D              K          +  +   K  +      ++        + 
Sbjct: 324 GGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLIGYASL 383

Query: 174 EYKVTFRSGP-DHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221
                    P   DP   V   +  G     G+  + + A   AA   L+
Sbjct: 384 RLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 433


>gi|100271808|gb|ABF69304.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271814|gb|ABF69308.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271820|gb|ABF69312.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271823|gb|ABF69314.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271826|gb|ABF69316.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271829|gb|ABF69318.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271835|gb|ABF69322.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271847|gb|ABF69330.1| ribonuclease III [Ehrlichia ruminantium]
 gi|108951328|gb|ABG25048.1| ribonuclease III [Ehrlichia ruminantium]
 gi|108951331|gb|ABG25050.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 137

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 73/133 (54%)

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           +L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A    
Sbjct: 1   NLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I+          +K+ A
Sbjct: 61  VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATGHNKKLA 120

Query: 212 EQVAAAEVLKREG 224
           EQ AA+ +L +  
Sbjct: 121 EQKAASLMLAKIN 133


>gi|37522217|ref|NP_925594.1| ribonuclease III [Gloeobacter violaceus PCC 7421]
 gi|35213217|dbj|BAC90589.1| ribonuclease III [Gloeobacter violaceus PCC 7421]
          Length = 242

 Score = 77.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 63/204 (30%), Gaps = 3/204 (1%)

Query: 21  SLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
            LL +AL H S S     E  +RLEFLGD IL LL +  L+        GE++   + LV
Sbjct: 32  ELLHRALIHPSWSAQEGGEDNDRLEFLGDEILRLLAAEFLYRADPELTVGEMTAVRSVLV 91

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S    +++A   DL  F+                 +       +         ++     
Sbjct: 92  SDVALAELAEGYDLGEFLV--VGRSASGDERGRITRLADGFEAVIGALYLSTGDLGLIRP 149

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
                   L         +   +             ++      D  P F   V   G  
Sbjct: 150 WLLPHLAHLAESVMADPTRGNHKSALQELTQKLAAGELPEYRLVDPGPPFRYEVWALGRL 209

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G   SK+ A+Q AA       
Sbjct: 210 WGSGEGPSKKLAQQRAARGAYAAL 233


>gi|320541047|ref|ZP_08040477.1| RNase III [Serratia symbiotica str. Tucson]
 gi|320028891|gb|EFW11140.1| RNase III [Serratia symbiotica str. Tucson]
          Length = 172

 Score = 77.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 3/167 (1%)

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F    EG++S    +LV   T +++ARE DL   +R+     K   S   SI AD V
Sbjct: 3   YQRFPHIDEGDMSRMRATLVRGHTLAEMAREFDLGECLRLGPGELKSGGSRRESILADTV 62

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+LI  ++LD  ++     +  +++ R   +  G  ++D KT LQE         P Y V
Sbjct: 63  EALIGGVFLDSDMQRVERLILDWYRSRLDEISPGDKQKDPKTRLQELLQGHHLPLPSYLV 122

Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
               G  HD  FT+  ++SGL  P  G+  S+R AEQ AA + LK+ 
Sbjct: 123 VQVRGEAHDQEFTIHCQVSGLNEPVMGIGSSRRKAEQAAAEQTLKKL 169


>gi|259148825|emb|CAY82070.1| Rnt1p [Saccharomyces cerevisiae EC1118]
          Length = 471

 Score = 77.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 24/230 (10%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              + ++  +   H S                  ERLEFLGD IL  +++ +++N F   
Sbjct: 204 EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 263

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQADVVESLI 123
            EG+LS    +LVS E   Q +   +    ++ + DL+ +  +F      + ADV E+ I
Sbjct: 264 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 323

Query: 124 AALYLDGGIEVAGTFVDKYWK----------QRALKSGKFRRDAKTELQEWAHAKFGVTP 173
             L  D              K          +  +   K  +      ++        + 
Sbjct: 324 GGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLIGYASL 383

Query: 174 EYKVTFRSGP-DHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221
                    P   DP   V   +  G     G+  + + A   AA   L+
Sbjct: 384 RLHYVTVKNPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 433


>gi|170091728|ref|XP_001877086.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648579|gb|EDR12822.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1358

 Score = 77.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 47/93 (50%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            S +E+ IG+ F    LL +ALTHSS+      SY RLEF+GD IL  ++   +FN   + 
Sbjct: 1075 SAIERIIGHNFQRPHLLAQALTHSSMQGHESASYGRLEFIGDAILDFMVIQHIFNRDQTL 1134

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
              G L++   ++VS    + V     L   +  
Sbjct: 1135 SPGALTLLKGAMVSNSALAAVCVSSGLRKHLLF 1167



 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 64/218 (29%), Gaps = 27/218 (12%)

Query: 1    MSALRYSTLEKRIGYAFAN----RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56
            M  +    + K +   F +      LL  +L   S    Y  +YERLE LGD  L  L +
Sbjct: 808  MRRIDDLLIVKELNARFFDHAIREDLLHVSLCAPSAGLEY--NYERLELLGDAFLKYLCT 865

Query: 57   TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
              +F    +  EG L +    L+S ++  + +  + L  +I+     +            
Sbjct: 866  IYVFVAEPTQNEGSLHIARQKLISNKSLLENSNLIGLPVYIQ----AKPFPAKSWQPPNF 921

Query: 117  DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
             +       +      E     +        +  G F R +       +     V  E  
Sbjct: 922  RLTPRTSKMIVDKSDEEAFTPMILGSEMSSDVVEGAFTRTSTACNPHVSGVDLAVINETS 981

Query: 177  VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
                  P                  +    +K+ A Q 
Sbjct: 982  DVNERDPP--------------FYGK---KNKKKARQD 1002


>gi|223944141|gb|ACN26154.1| unknown [Zea mays]
          Length = 206

 Score = 77.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58
           MSA   + +E  +GY F ++SL+E ALTH S    +   ++YERLE+LGD +L  L+S  
Sbjct: 43  MSAKDVTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSRE 102

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +F  + + + G L+    + V  E  ++VA    L  F+R  +   +D           +
Sbjct: 103 VFRTYRTLQPGPLTRLRAANVDTEKLARVAVHRGLHRFLRHKAPKLQDQKKCANIQFTQM 162


>gi|305354766|emb|CBL30926.1| Dicer protein [Echinococcus multilocularis]
          Length = 1981

 Score = 77.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 88/280 (31%), Gaps = 64/280 (22%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----------------SYERLEFLG 47
            R+S LE+ IGY F NR LL +A THS+    +                    YERLEFLG
Sbjct: 1695 RFSKLEEIIGYTFKNRRLLIEAFTHSTCRDLHGPPSDDDGGFHGSVTSISGGYERLEFLG 1754

Query: 48   DRILGLLISTLLFNHFDSA--KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
            D +L   ++  LF    +A    G L+   ++LV+      +A    L +F+R ++    
Sbjct: 1755 DAVLDYAVTRFLFTTDATARLSPGALTDLRSALVNNVVFGALAVRHGLHAFLRAAAPPLT 1814

Query: 106  DVCSFMTSIQADVVESLIAALYLDGGIEV------------------------------- 134
               +       DVV   +  L                                       
Sbjct: 1815 RTMALFLRHHHDVVRGDLDVLIAPEVNACRENKGATASQAEGDRANEEVEVPKALGDVFE 1874

Query: 135  ------------AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
                            + + +     +  +       +       +              
Sbjct: 1875 SLAGAVFLDSGLCLNTLWRVFFPLLRERIERYSTCVAKSPVRRLLELCPERVKFERPMVR 1934

Query: 183  PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            PD   R  VVV ++G+    G+  + R A+  AA    +R
Sbjct: 1935 PDGKMR--VVVRVAGIGRYVGVGRTYRLAKSAAADLAYRR 1972


>gi|302318908|ref|NP_001180543.1| dicer-2 [Bombyx mori]
 gi|300669733|dbj|BAJ11655.1| DICER-2 [Bombyx mori]
          Length = 1677

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 1/107 (0%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + +EK + Y F + + L  AL+HSS   +    SYERLEFLGD I+  L+++ +F +   
Sbjct: 1424 TDVEKILNYTFKDSTFLLNALSHSSYIRNRLTSSYERLEFLGDAIIDFLVTSHIFENCRE 1483

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
             K GE++   ++LV+  T +    +L L  ++    +   +      
Sbjct: 1484 LKPGEMTDLRSALVNNVTFAAYTVKLGLHKYLCSELNPSLEKAIMKF 1530


>gi|309800535|ref|ZP_07694686.1| ribonuclease III [Streptococcus infantis SK1302]
 gi|308115846|gb|EFO53371.1| ribonuclease III [Streptococcus infantis SK1302]
          Length = 115

 Score = 77.3 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 1/109 (0%)

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTP 173
             D  E+ + AL LD  I+   TF+ +    +      +  +D KT LQE       V  
Sbjct: 1   MGDAFEAFLGALLLDKDIKTVKTFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDI 60

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            Y+V    GP HD  F V V + G +   G   SK+ AEQ AA   +++
Sbjct: 61  RYQVISEIGPAHDKMFEVEVLVEGQSLGSGKGRSKKLAEQEAAKNAVEK 109


>gi|321452752|gb|EFX64071.1| hypothetical protein DAPPUDRAFT_118569 [Daphnia pulex]
          Length = 344

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 65/241 (26%), Gaps = 22/241 (9%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLL 59
            +   + LE++IGY F +++LL +ALTHSS +         E LE LGD  L L      
Sbjct: 61  KSFSMTALEEKIGYEFKDKTLLGRALTHSSANVTKCPSRDGENLEVLGDASLDLNPRYNQ 120

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                       +     +        + +       I                   +  
Sbjct: 121 GQLSVLKSAITCNDTLAVIAVRSGLHLLLQHRLPEKQIEELRSFVDHQNKNQHLFSHEKE 180

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--------------------RALKSGKFRRDAKT 159
             +I++   D   ++    V     +                         G       T
Sbjct: 181 LVIISSSEGDRAFDIDYPKVYADAFESLIGALRIDCEREDKVIRKVVLNLMGDVIAKFHT 240

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            +      +                 D    V++E+       G   S ++A+  AA   
Sbjct: 241 NIPVCPLQRVNQNKIRTEFKEEKNLPDGTVNVILEVKNFQSFHGSGQSLKSAKTAAARLA 300

Query: 220 L 220
           +
Sbjct: 301 I 301


>gi|302896162|ref|XP_003046961.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI
            77-13-4]
 gi|256727889|gb|EEU41248.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI
            77-13-4]
          Length = 1452

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 71/257 (27%), Gaps = 47/257 (18%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
            GY F   +LL  A  H S  +    +Y+RLEFLGD +L + I   LF  F  A    L+ 
Sbjct: 1162 GYRFKWPALLRSAFKHPSWPYDPVPNYQRLEFLGDALLDMAIVDNLFQRFPQADPQWLTE 1221

Query: 74   RFNSLVSAETCSQVARELDLASF---------------------------------IRVS 100
               ++ S +    +  +LDL                                        
Sbjct: 1222 HKMAMASNQFLGCLCVKLDLHKHLTSTTSSLIGQISSYASELELAEEDARQEAKANKTAM 1281

Query: 101  SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
                    S      ADV+E+L+ A+++D   +                      D+   
Sbjct: 1282 RKDFWLRASAPPKAFADVMEALVGAMFVDAKYDYTVVRNFFTRFIEPYFEDMALYDSFAN 1341

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRF-------------TVVVE-ISGLAPAQGMDC 206
                 +    +  +   T       +                 V V  +     A     
Sbjct: 1342 KHPVTYLSKKMQQDLGCTNWRVSAENVPCGVEEGIAALTESDVVAVFMVHQKVVANATAK 1401

Query: 207  SKRAAEQVAAAEVLKRE 223
            S R A+   A   L   
Sbjct: 1402 SGRYAKIAVAKRALAML 1418



 Score = 43.0 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 12/89 (13%)

Query: 22   LLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
            L  +A+T  S                   +YERLEFLGD  L +  +  LF     + E 
Sbjct: 966  LALEAMTKDSDNSGEHDEEQVNFQPGMGSNYERLEFLGDSFLKMATTISLFTLIPESDEC 1025

Query: 70   ELSVRFNSLVSAETCSQVARELDLASFIR 98
               V    L+  +     A +  L  +IR
Sbjct: 1026 GYHVERMILICNQNLFNHAVDRKLHEYIR 1054


>gi|242809985|ref|XP_002485488.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500]
 gi|218716113|gb|EED15535.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500]
          Length = 1420

 Score = 76.9 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   +E+ +GY F   S+L +ALTH   ++    +Y+RLEFLGD +L   +    FNH +
Sbjct: 1123 KLGQMEEILGYKFNKPSILFEALTHP-CANDGAPTYQRLEFLGDSLLDHFVVQEFFNHPE 1181

Query: 65   SAKEGELSVRFNSLVSAETCSQVAREL 91
                 ++ +   ++V+A     + + L
Sbjct: 1182 KISHQDMHLMRTAVVNAHFLGFLCQSL 1208



 Score = 44.1 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
             F N S +  A++ SS    +   Y+R EFLGD +L L+ S  L        EG LS   
Sbjct: 953  KFENLSHVLTAISASSAQEEH--DYQRYEFLGDSLLKLITSIHLVVKKPLWHEGLLSAEK 1010

Query: 76   NSLVSAETCSQVARELDLASF 96
            +++VS     + A +L L  F
Sbjct: 1011 DTIVSNGRLHRTALDLGLDKF 1031


>gi|109390419|gb|ABG33778.1| double-strand-specific Pac1 ribonuclease [Schizosaccharomyces
           pombe]
          Length = 363

 Score = 76.5 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 13/215 (6%)

Query: 21  SLLEKALTHSSISHSYQES-----------YERLEFLGDRILGLLISTLLFNHFDSAKEG 69
            L + AL H S ++    +            ERLEFLGD    L  + ++F+ F    E 
Sbjct: 141 KLKKHALMHISRAYEIYPNQSNPNELLDIHNERLEFLGDSFFNLFTTRIIFSKFPQMDEE 200

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            LS      V  E+  + AR       + +S    KD       + AD  E+ + AL LD
Sbjct: 201 SLSKLRAKFVGNESADKFARLYGFDKTLVLSYSAEKDQLRKSQKVIADTFEAYLGALILD 260

Query: 130 GGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           G  E A  +V +  + +    + +   D   + + +         EY+    +G   +  
Sbjct: 261 GQEETAFQWVSRLLQPKIANITVQRPIDKLAKSKLFHKYSTLGHIEYRWVDGAGGSAEG- 319

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           + +    +G   A+    +++ A   AA + L+  
Sbjct: 320 YVIACIFNGKEVARAWGANQKDAGSRAAMQALEVL 354


>gi|255524265|ref|ZP_05391224.1| Ribonuclease III [Clostridium carboxidivorans P7]
 gi|255512090|gb|EET88371.1| Ribonuclease III [Clostridium carboxidivorans P7]
          Length = 152

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           +   +  ++A++ DL  +IR+S            SI AD VE++IAA+Y+D G E A  F
Sbjct: 1   MCENSLYEIAKKWDLGKYIRMSKGEELTGGRERVSILADCVEAIIAAIYIDAGFEKAKGF 60

Query: 139 VDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
           V   +K         K   D KT+LQE       V  +Y +    GP H  +F   V ++
Sbjct: 61  VLTNFKDTIEKAIKNKIILDYKTKLQEVMQKNGDVDIQYDLMKYEGPPHRRKFYTQVSVN 120

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 G   SK+ +EQ AA + LK  
Sbjct: 121 NKVLGNGTGYSKKESEQSAAKKALKGL 147


>gi|302693114|ref|XP_003036236.1| hypothetical protein SCHCODRAFT_31237 [Schizophyllum commune H4-8]
 gi|300109932|gb|EFJ01334.1| hypothetical protein SCHCODRAFT_31237 [Schizophyllum commune H4-8]
          Length = 1342

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +S L+ ++GY F +  LL +ALTHSS +      SYERLEFLGD ++ L +   L+  F 
Sbjct: 1086 FSELQAKLGYTFRDGGLLCEALTHSSFASLDSYGSYERLEFLGDAVINLAVVDYLYRKFP 1145

Query: 65   SAKEGELSVRFNSLVSAET 83
             A   +LS+     V  + 
Sbjct: 1146 DANSDQLSLPRARAVCNQA 1164



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 13   IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            +G  +  R LL +ALT          + +RLE LGD +L L  +  LFN +    EG+L+
Sbjct: 919  LGLPYIERDLLIQALTLP--CAGMPFNNQRLETLGDAVLELSTTVHLFNKYPHRHEGQLT 976

Query: 73   VRFNSLVSAETCSQVARELDLASF 96
                  +S +     ARE+ L  F
Sbjct: 977  PLRQICISNKCLLTRAREVQLERF 1000


>gi|251764789|sp|Q7XD96|DCL3B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3b; AltName:
            Full=Dicer-like protein 3b; Short=OsDCL3b
          Length = 1637

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 1/99 (1%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHF 63
                LE ++ Y F+ + LL +A+TH S+        Y+RLEFLGD +L LL++  L+   
Sbjct: 1240 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 1299

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
                 GEL+   ++LVS E  +Q     ++ S ++  S 
Sbjct: 1300 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSG 1338



 Score = 41.5 bits (95), Expect = 0.081,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 11/186 (5%)

Query: 7    STLEKRIGYAFANR--SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            S L + IGY   +   +L+ +A+T  ++      S ERLE LGD +L  ++   LF  + 
Sbjct: 1032 SQLRREIGYN-QHIPVTLILEAIT--TLRCCETFSLERLELLGDSVLKYVVGCDLFLRYP 1088

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS------FMTSIQADV 118
               EG+LS   +  V   T  +      L  ++R ++   +   +              +
Sbjct: 1089 MKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGI 1148

Query: 119  VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
              + + +       + +        +       K   D    L    +   G+     V 
Sbjct: 1149 ETAFVPSHRRYIRDDPSFFVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALWVM 1208

Query: 179  FRSGPD 184
               G D
Sbjct: 1209 RWFGID 1214


>gi|222613035|gb|EEE51167.1| hypothetical protein OsJ_31945 [Oryza sativa Japonica Group]
          Length = 1570

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 1/99 (1%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHF 63
                LE ++ Y F+ + LL +A+TH S+        Y+RLEFLGD +L LL++  L+   
Sbjct: 1172 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 1231

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
                 GEL+   ++LVS E  +Q     ++ S ++  S 
Sbjct: 1232 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSG 1270



 Score = 41.5 bits (95), Expect = 0.081,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 11/186 (5%)

Query: 7    STLEKRIGYAFANR--SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            S L + IGY   +   +L+ +A+T  ++      S ERLE LGD +L  ++   LF  + 
Sbjct: 964  SQLRREIGYN-QHIPVTLILEAIT--TLRCCETFSLERLELLGDSVLKYVVGCDLFLRYP 1020

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS------FMTSIQADV 118
               EG+LS   +  V   T  +      L  ++R ++   +   +              +
Sbjct: 1021 MKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGI 1080

Query: 119  VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
              + + +       + +        +       K   D    L    +   G+     V 
Sbjct: 1081 ETAFVPSHRRYIRDDPSFFVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALWVM 1140

Query: 179  FRSGPD 184
               G D
Sbjct: 1141 RWFGID 1146


>gi|218184775|gb|EEC67202.1| hypothetical protein OsI_34085 [Oryza sativa Indica Group]
          Length = 1093

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 1/99 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHF 63
               LE ++ Y F+ + LL +A+TH S+        Y+RLEFLGD +L LL++  L+   
Sbjct: 726 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 785

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
                GEL+   ++LVS E  +Q     ++ S ++  S 
Sbjct: 786 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSG 824



 Score = 35.7 bits (80), Expect = 4.5,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 56/176 (31%), Gaps = 13/176 (7%)

Query: 20  RSLLE-----KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             LL      +A+T  ++      S ERLE LGD +L  ++   LF  +    EG+LS  
Sbjct: 527 PELLIHLDILEAIT--TLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDM 584

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS------FMTSIQADVVESLIAALYL 128
            +  V   T  +      L  ++R ++   +   +              +  + + +   
Sbjct: 585 RSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIETAFVPSHRR 644

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
               + +        +       K   D    L    +   G+     V    G D
Sbjct: 645 YIRDDPSFVVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALWVMRWFGID 700


>gi|78099743|gb|ABB20894.1| dicer-like protein [Oryza sativa Indica Group]
          Length = 1116

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 1/99 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHF 63
               LE ++ Y F+ + LL +A+TH S+        Y+RLEFLGD +L LL++  L+   
Sbjct: 720 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 779

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
                GEL+   ++LVS E  +Q     ++ S ++  S 
Sbjct: 780 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSG 818



 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 11/186 (5%)

Query: 7   STLEKRIGYAFANR--SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           S L + IGY   +   +L+ +A+T  ++      S ERLE LGD +L  ++   LF  + 
Sbjct: 512 SQLRREIGYN-QHIPVTLILEAIT--TLRCCETFSLERLELLGDSVLKYVVGCDLFLRYP 568

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS------FMTSIQADV 118
              EG+LS   +  V   T  +      L  ++R ++   +   +              +
Sbjct: 569 MKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGI 628

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
             + + +       + +        +       K   D    L    +   G+     V 
Sbjct: 629 ETAFVPSHRRYIRDDPSFVVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALWVM 688

Query: 179 FRSGPD 184
              G D
Sbjct: 689 RWFGID 694


>gi|297610684|ref|NP_001064898.2| Os10g0485600 [Oryza sativa Japonica Group]
 gi|18087887|gb|AAL59041.1|AC087182_24 putative RNA helicase [Oryza sativa Japonica Group]
 gi|31432753|gb|AAP54346.1| Type III restriction enzyme, res subunit family protein, expressed
            [Oryza sativa Japonica Group]
 gi|255679506|dbj|BAF26812.2| Os10g0485600 [Oryza sativa Japonica Group]
          Length = 1458

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 1/99 (1%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHF 63
                LE ++ Y F+ + LL +A+TH S+        Y+RLEFLGD +L LL++  L+   
Sbjct: 1103 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 1162

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
                 GEL+   ++LVS E  +Q     ++ S ++  S 
Sbjct: 1163 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSG 1201



 Score = 36.4 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 56/176 (31%), Gaps = 13/176 (7%)

Query: 20   RSLLE-----KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
              LL      +A+T  ++      S ERLE LGD +L  ++   LF  +    EG+LS  
Sbjct: 904  PELLIHLDILEAIT--TLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDM 961

Query: 75   FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS------FMTSIQADVVESLIAALYL 128
             +  V   T  +      L  ++R ++   +   +              +  + + +   
Sbjct: 962  RSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIETAFVPSHRR 1021

Query: 129  DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
                + +        +       K   D    L    +   G+     V    G D
Sbjct: 1022 YIRDDPSFFVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALWVMRWFGID 1077


>gi|330982830|gb|EGH80933.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 49

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 2  SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGL 53
           ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  
Sbjct: 1  MSVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNF 49


>gi|330889503|gb|EGH22164.1| ribonuclease III [Pseudomonas syringae pv. mori str. 301020]
          Length = 52

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 2  SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGL 53
           ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  
Sbjct: 1  MSVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNF 49


>gi|256077012|ref|XP_002574802.1| ribonuclease III [Schistosoma mansoni]
 gi|238660017|emb|CAZ31035.1| ribonuclease III, putative [Schistosoma mansoni]
          Length = 907

 Score = 76.5 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 1/95 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             R+  L++++GY F    LL +A+TH SSI+  Y  +Y+RLEFLGD ILG +IS  LF 
Sbjct: 681 NQRFFQLQEKLGYYFKGIELLAEAMTHQSSINKQYWGNYQRLEFLGDSILGHIISNYLFQ 740

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
              ++  G L+   +++VS    + V  E D+  F
Sbjct: 741 KCPNSSPGALTTARSTVVSNINLANVVVEHDIYPF 775


>gi|302901921|ref|XP_003048541.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI
            77-13-4]
 gi|256729474|gb|EEU42828.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI
            77-13-4]
          Length = 1381

 Score = 76.1 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE+ IGY+F  +SLL +A+TH S +  ++Q SYE+LEFLGD +L  +I T +FN   
Sbjct: 1092 LEPLEELIGYSFRKKSLLIEAVTHGSYAGDTHQRSYEQLEFLGDAVLDYIIVTKVFNVKP 1151

Query: 65   SAKEGELSVRFNSLVSAET 83
                 +L +   ++V+ E 
Sbjct: 1152 PLPHSDLHLIKTAMVNGEF 1170



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
              +  L+ +A++  S        YERLEFLGD IL        +       EG L    
Sbjct: 914 NINDLQLVLEAISSRSAHEPV--DYERLEFLGDSILKYCTVIQAYAEHPLWPEGLLVPFK 971

Query: 76  NSLVSAETCSQVARELDLASF 96
           + LVS +   +   E  L+ F
Sbjct: 972 DQLVSNKRLHRACLESGLSKF 992


>gi|19112084|ref|NP_595292.1| double-strand-specific ribonuclease Pac1 [Schizosaccharomyces pombe
           972h-]
 gi|129540|sp|P22192|PAC1_SCHPO RecName: Full=Double-strand-specific pac1 ribonuclease; AltName:
           Full=Protein hcs
 gi|4999|emb|CAA38745.1| Pac1 ribonuclease [Schizosaccharomyces pombe]
 gi|1042212|gb|AAB34897.1| double-strand-specific Pac1 ribonuclease [Schizosaccharomyces
           pombe]
 gi|2959372|emb|CAA17926.1| double-strand-specific ribonuclease Pac1 [Schizosaccharomyces
           pombe]
 gi|68697667|emb|CAJ14141.1| unnamed protein product [Schizosaccharomyces pombe]
          Length = 363

 Score = 76.1 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 13/215 (6%)

Query: 21  SLLEKALTHSSISHSYQES-----------YERLEFLGDRILGLLISTLLFNHFDSAKEG 69
            L E+   H S ++    +            ERLEFLGD    L  + ++F+ F    EG
Sbjct: 141 KLKEQVFMHISRAYEIYPNQSNPNELLDIHNERLEFLGDSFFNLFTTRIIFSKFPQMDEG 200

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            LS      V  E+  + AR       + +S    KD       + AD  E+ + AL LD
Sbjct: 201 SLSKLRAKFVGNESADKFARLYGFDKTLVLSYSAEKDQLRKSQKVIADTFEAYLGALILD 260

Query: 130 GGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           G  E A  +V +  + +    + +   D   + + +         EY+    +G   +  
Sbjct: 261 GQEETAFQWVSRLLQPKIANITVQRPIDKLAKSKLFHKYSTLGHIEYRWVDGAGGSAEG- 319

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           + +    +G   A+    +++ A   AA + L+  
Sbjct: 320 YVIACIFNGKEVARAWGANQKDAGSRAAMQALEVL 354


>gi|169849606|ref|XP_001831506.1| 60S ribosomal protein L3 [Coprinopsis cinerea okayama7#130]
 gi|116507458|gb|EAU90353.1| 60S ribosomal protein L3 [Coprinopsis cinerea okayama7#130]
          Length = 362

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 76/215 (35%), Gaps = 15/215 (6%)

Query: 23  LEKALTHSSISHSYQESYER----------LEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           + +A TH S    +++ Y R          L   G+ ++GL     L   +         
Sbjct: 78  IRQACTHPSFIDVWRQHYPREKRIPKDNAQLSVFGNSLMGLFAMEYLTTKYPYLPTRIQK 137

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV--ESLIAALYLDG 130
               + V   TC+ VA EL     +R     +      +    A      ++ A +Y   
Sbjct: 138 AVMTAHVGPNTCASVATELGADKLLRWHRTPQTPNAPAVLHTDALASIPRAMTALIYKKH 197

Query: 131 GIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDP 187
            +  A  FV  Y+  R +         D K  L+E  H      P+ ++   +G   + P
Sbjct: 198 SLPSARQFVHSYFLSRQVDIRSMLKFLDPKKALKELVHKFGREPPKSRLLKETGRFSNTP 257

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            F V +        +G   S + AE  AA + L+R
Sbjct: 258 VFVVGIFSGADQIGEGFGSSLKMAEFRAAEDALQR 292


>gi|241061224|ref|XP_002408099.1| dicer-1, putative [Ixodes scapularis]
 gi|215492368|gb|EEC02009.1| dicer-1, putative [Ixodes scapularis]
          Length = 1348

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 1/98 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + +E+ +GY F +RS L +A+TH+S   +   + Y+RLEFLGD ++  L++  L+    
Sbjct: 1066 VADVERALGYTFVDRSFLLQAVTHASYYRNRLTDCYQRLEFLGDAVIDYLVTRYLYELPR 1125

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
                G+L+   +SLV+    + +  +  L    +  + 
Sbjct: 1126 KFNPGQLTDLRSSLVNNTFFASLVVKYGLHGCFKHCNP 1163


>gi|51512119|gb|AAU05314.1| pac1 ribonuclease [Schizosaccharomyces pombe]
 gi|51512121|gb|AAU05315.1| pac1 ribonuclease [Schizosaccharomyces pombe]
          Length = 363

 Score = 76.1 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 83/215 (38%), Gaps = 13/215 (6%)

Query: 21  SLLEKALTHSSISHSYQES-----------YERLEFLGDRILGLLISTLLFNHFDSAKEG 69
            L ++   H S ++    +            ERLEFLGD    L  + ++F+ F    EG
Sbjct: 141 KLKKQVFMHISRAYEIYPNQSNPNELLDIHNERLEFLGDSFFNLFTTRIIFSKFPQMDEG 200

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            LS      V  E+  + AR       + +S    KD       + AD  E+ + AL LD
Sbjct: 201 SLSKLRAKFVGNESADKFARLYGFDKTLVLSYSAEKDQLRKSQKVIADTFEAYLGALILD 260

Query: 130 GGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           G  E A  +V +  + +    + +   D   + + +         EY+    +G   +  
Sbjct: 261 GQEETAFQWVSRLLQPKIANITVQRPIDKLAKSKLFHKYSTLGHIEYRWVDGAGGSAEG- 319

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           + +    +G   A+    +++ A   AA + L+  
Sbjct: 320 YVIACIFNGKEVARAWGANQKDAGSRAAMQALEVL 354


>gi|121714731|ref|XP_001274976.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1]
 gi|158706439|sp|A1C9M6|DCL2_ASPCL RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
 gi|119403130|gb|EAW13550.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1]
          Length = 1389

 Score = 75.7 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L++ I Y F N SLL +ALTH S  +    +SY+RLEFLGD +L ++I + +FNH   
Sbjct: 1100 DRLKRHISYTFENESLLVEALTHPSCDYDASTQSYQRLEFLGDAVLDMIIVSAIFNHPVQ 1159

Query: 66   AKEGELSVRFNSLVSAETCSQVAREL 91
              +G ++   ++LV+A   + +  E 
Sbjct: 1160 MPQGHMTKIKHALVNANLLAFLCMEF 1185



 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F +   +  A++  S       +Y+R EFLGD IL   +S  LF    +  EG LS   +
Sbjct: 933  FTSTQHIITAISAPSAQA--LTNYQRYEFLGDSILKFSVSCQLFFKHPNWHEGYLSEGRD 990

Query: 77   SLVSAETCSQVARELDLASFIRVSS 101
             +V     ++ A +  L +F+    
Sbjct: 991  EIVQNPRLTKAALDTGLDAFVITKM 1015


>gi|224088236|ref|XP_002308384.1| dicer-like protein [Populus trichocarpa]
 gi|222854360|gb|EEE91907.1| dicer-like protein [Populus trichocarpa]
          Length = 1588

 Score = 75.7 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 86/246 (34%), Gaps = 31/246 (12%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            ++  +TLE  +G+ F  + LL +A  H S  +  +     L+F    +    I       
Sbjct: 1177 SMDLATLENLLGHQFLYKGLLLQAFVHPSHKNGGEFGVMILQFAMTLMFPPEIGVPWRCF 1236

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-------------------L 103
            +   K G L+   + LV+    + VA +     ++   SD                    
Sbjct: 1237 YPKMKPGHLTDLRSVLVNNRAFASVAVDRSFHEYLICDSDALSAATKKFVDFVRTPKSER 1296

Query: 104  RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
            R         +  D+VES + A+ LD G ++   +         + S      + + LQ 
Sbjct: 1297 RLLEGPKCPKVLGDLVESSVGAILLDTGFDLNHIWK-------IMLSFLDPISSFSNLQI 1349

Query: 164  WAHAKFGVTPEYKVTFRSGPDHDP--RFTVVVEISGLAP---AQGMDCSKRAAEQVAAAE 218
                +     +        P       F+V V +SG      A   + +K+ A ++A+ +
Sbjct: 1350 NPVRELKELCQSHNWDFEVPASKKGRTFSVDVTLSGKDMNISASASNSNKKEAIRMASEK 1409

Query: 219  VLKREG 224
            +  R  
Sbjct: 1410 IYARLK 1415



 Score = 37.6 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 33/112 (29%), Gaps = 5/112 (4%)

Query: 24   EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV---S 80
             +ALT          S ERLE LGD  L   +    F   D+  EGEL+ + ++ V    
Sbjct: 1008 LEALTTEKCQERL--SLERLETLGDAFLKFAVGRHFFLLHDTLDEGELTRKRSNAVFIRD 1065

Query: 81   AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                      L        + +    + S   S      +            
Sbjct: 1066 QPFDPYQFFALGHPCPRICTKESEGTIHSQCGSHVTGQAKGSEVRCSKGHHW 1117


>gi|251772774|gb|EES53336.1| Ribonuclease III [Leptospirillum ferrodiazotrophum]
          Length = 366

 Score = 75.7 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 102/231 (44%), Gaps = 46/231 (19%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFN 61
            TL + +G  F +   +E+ALTH S SH         +YERLEFLGDR++GL++S  L N
Sbjct: 14  ETLIRMLGLPFKDSFRIEEALTHRSASHERGRKKPIPNYERLEFLGDRVVGLIVSEYLLN 73

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  A EGE+   F+++VS +T + +AR +DL S++ +             S+ AD  E+
Sbjct: 74  MWPQATEGEVGQVFSTIVSTQTLASIARRMDLGSYMILGKGSNSSGERENASLLADTFEA 133

Query: 122 LIAALYLDGGIEVAGTFVDKYW-------------------------------------- 143
           L AA+Y + G+E     +  ++                                      
Sbjct: 134 LTAAIYCEYGLETTRQILIPWFAQPLQEILRAIESAPPREPRRATVPEPAPSPVVTVTAP 193

Query: 144 ---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
                   +  K   + K  +Q+WA   FG+ PE  +   SGP H  RF +
Sbjct: 194 RSATPSPRERPKHPPNYKLLIQKWAQQNFGLLPEVVLIEESGPSHQKRFVM 244


>gi|100271838|gb|ABF69324.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271841|gb|ABF69326.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 137

 Score = 75.7 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 73/133 (54%)

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           +L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A    
Sbjct: 1   NLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I+          +K+ A
Sbjct: 61  VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVGINSHETLHATGHNKKLA 120

Query: 212 EQVAAAEVLKREG 224
           EQ AA+ +L +  
Sbjct: 121 EQKAASLMLAKIN 133


>gi|258565145|ref|XP_002583317.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237907018|gb|EEP81419.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1194

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 79/224 (35%), Gaps = 24/224 (10%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            ++    +E+ +GY F  +SL+  ALTH S S + + SY+RLEF+GD +L +++   LF  
Sbjct: 896  SMVLPEIEELLGYTFTKKSLVLAALTHPS-STTSRHSYQRLEFIGDSVLDIIVVQALFGS 954

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                    + +   +LV+A+        L +  ++        +                
Sbjct: 955  PREFAHYNMHLMRTALVNADF----LAFLCMNVYVEKDRGEAVENIKKKVK--------- 1001

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
               + +         F+        + +         ELQE  + +   +  Y  T    
Sbjct: 1002 ---IEMTKRKSHLWGFMKHSQSWDIVHAQNSAIKQHEELQEEINERLNSSQSYPWTLLCR 1058

Query: 183  PDHDPRFT-VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             D    F+ ++  I G                 A    L+R G+
Sbjct: 1059 LDAAKFFSDIIESILGAIFIDSQGS------MSACEAFLERIGL 1096



 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            F++ SL+  A+  SS       +Y+RLEFLGD +L L  S  L        EG L+ R 
Sbjct: 726 KFSDLSLVLTAI--SSSVAREASNYQRLEFLGDSLLKLYTSIELAAKNLQWPEGLLTSRK 783

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           + +VS    ++ A E  L  FI            +  S   D V +
Sbjct: 784 SHVVSNSHLAKAATETGLDRFILTKP---FSGAKWRPSYNTDHVHA 826


>gi|119487463|ref|XP_001262524.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181]
 gi|158705692|sp|A1D9Z6|DCL2_NEOFI RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
 gi|119410681|gb|EAW20627.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181]
          Length = 1388

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 4/90 (4%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLL 59
            M       L+  IGY F + SLL +ALTH S  +    +SY+RLE+LGD +L ++I + +
Sbjct: 1096 MMN---ERLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAI 1152

Query: 60   FNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
            FNH     +G+++   +++V+A   + +  
Sbjct: 1153 FNHPIQRPQGDMTKIKHAVVNANLLAFLCM 1182



 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F +   +  A++    +H+   +Y+R EFLGD IL   +S  LF    +  EG LS    
Sbjct: 932  FKSTDHIITAISTP-FAHALT-NYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGRA 989

Query: 77   SLVSAETCSQVARELDLASF 96
             +V     ++ A +  L ++
Sbjct: 990  MIVQNPRLAKAALDTGLDAY 1009


>gi|302687578|ref|XP_003033469.1| hypothetical protein SCHCODRAFT_37756 [Schizophyllum commune H4-8]
 gi|300107163|gb|EFI98566.1| hypothetical protein SCHCODRAFT_37756 [Schizophyllum commune H4-8]
          Length = 1343

 Score = 75.7 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 2/127 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64
               +E+ +GY F  ++LL +ALTH+S        SY RLEFLGD +L + ++  +F    
Sbjct: 1127 LQYVERMLGYTFERKALLIEALTHASYQEPLPTPSYGRLEFLGDAVLDMAVTPYIFASKK 1186

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            +   G + +R ++ V+    + V     + +  +              + ++  +     
Sbjct: 1187 NYSPGHIHLRRSAAVNMHFLAFVCLRAKV-AVDKHMPRPTAPDWRVQMATESQDIYLWQC 1245

Query: 125  ALYLDGG 131
             L+    
Sbjct: 1246 MLHSSST 1252


>gi|331250710|ref|XP_003337961.1| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309316951|gb|EFP93542.1| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1489

 Score = 75.3 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 43/78 (55%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            L+   LE++IGY F  + LL +ALTH S +      YER E+LGD ++ + I    +  F
Sbjct: 1107 LKCQALEEKIGYVFKEKLLLVQALTHRSANSFMTNCYEREEWLGDAVIDMWIVEHAYKRF 1166

Query: 64   DSAKEGELSVRFNSLVSA 81
            D A   EL++    +VS 
Sbjct: 1167 DHATAEELTLARAKVVSN 1184



 Score = 37.6 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 2   SALRYSTLEKRIGYAFANRSLL--EKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
            +L+ +TL KR+   F   SLL   +ALT           Y+ LE LGD  L L  S  +
Sbjct: 919 DSLQATTLFKRLD--FPTISLLHGIQALTPP--GGGVPWDYQTLETLGDAFLKLATSVHV 974

Query: 60  FNHFDSAKEGELSVRFNSLVSA 81
           +       EG++S   +  V  
Sbjct: 975 YLSHLKKGEGDMSHVRSRSVDN 996


>gi|158706443|sp|Q0CEI2|DCL2_ASPTN RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
          Length = 1377

 Score = 75.3 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 5/92 (5%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLL 59
            M+     +L++ +GY F N +LL +ALTH S  S +  +SY+RLEFLGD +L +++   +
Sbjct: 1089 MN----DSLKQHLGYTFVNEALLVEALTHPSCRSDASTQSYQRLEFLGDAVLDMVVVHAM 1144

Query: 60   FNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
             +H     +GE+++  ++L +A   +    E 
Sbjct: 1145 AHHAVECPQGEMTMIKHALTNANLLAFFCMEF 1176



 Score = 39.9 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 10   EKRI-GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            E  +    F++   +  A++  +        Y+R EF GD +L   +S  L+    +  E
Sbjct: 921  ETILQDVQFSSTRHVITAISAPTAQSPT--DYQRYEFFGDSVLKFTVSCQLYMQHPNWPE 978

Query: 69   GELSVRFNSLVSAETCSQVARELDLASF 96
            G LS   + +V     ++ A ++ L +F
Sbjct: 979  GYLSEGRDEIVQNNRLARAALDVGLDAF 1006


>gi|115401870|ref|XP_001216523.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114190464|gb|EAU32164.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1635

 Score = 75.3 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 5/92 (5%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLL 59
            M+     +L++ +GY F N +LL +ALTH S  S +  +SY+RLEFLGD +L +++   +
Sbjct: 1063 MN----DSLKQHLGYTFVNEALLVEALTHPSCRSDASTQSYQRLEFLGDAVLDMVVVHAM 1118

Query: 60   FNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
             +H     +GE+++  ++L +A   +    E 
Sbjct: 1119 AHHAVECPQGEMTMIKHALTNANLLAFFCMEF 1150



 Score = 39.9 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 10  EKRI-GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           E  +    F++   +  A++  +        Y+R EF GD +L   +S  L+    +  E
Sbjct: 895 ETILQDVQFSSTRHVITAISAPTAQSPT--DYQRYEFFGDSVLKFTVSCQLYMQHPNWPE 952

Query: 69  GELSVRFNSLVSAETCSQVARELDLASF 96
           G LS   + +V     ++ A ++ L +F
Sbjct: 953 GYLSEGRDEIVQNNRLARAALDVGLDAF 980


>gi|159122296|gb|EDP47418.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus A1163]
          Length = 1384

 Score = 75.3 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 4/92 (4%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLL 59
            M       L+  IGY F + SLL +ALTH S  +    +SY+RLE+LGD +L ++I + +
Sbjct: 1092 MMN---DRLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAI 1148

Query: 60   FNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
            FNH     +G+++   +++V+A   + +  E 
Sbjct: 1149 FNHRIQRPQGDMTKIKHAVVNANLLAFLCMEF 1180



 Score = 40.3 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            +F +   +  A++          +Y+R EFLGD IL   +S  LF    +  EG LS   
Sbjct: 927  SFKSTDHIITAISTP--LAHRLTNYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGR 984

Query: 76   NSLVSAETCSQVARELDLASF 96
            + +V     ++ A +  L ++
Sbjct: 985  DMIVQNPRLAKAALDTGLDAY 1005


>gi|158706446|sp|Q4WA22|DCL2_ASPFU RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
          Length = 1388

 Score = 75.3 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 4/92 (4%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLL 59
            M       L+  IGY F + SLL +ALTH S  +    +SY+RLE+LGD +L ++I + +
Sbjct: 1096 MMN---DRLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAI 1152

Query: 60   FNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
            FNH     +G+++   +++V+A   + +  E 
Sbjct: 1153 FNHRIQRPQGDMTKIKHAVVNANLLAFLCMEF 1184



 Score = 40.3 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            +F +   +  A++          +Y+R EFLGD IL   +S  LF    +  EG LS   
Sbjct: 931  SFKSTDHIITAISTP--LAHRLTNYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGR 988

Query: 76   NSLVSAETCSQVARELDLASF 96
            + +V     ++ A +  L ++
Sbjct: 989  DMIVQNPRLAKAALDTGLDAY 1009


>gi|70981901|ref|XP_746479.1| RNA helicase/RNAse III [Aspergillus fumigatus Af293]
 gi|66844102|gb|EAL84441.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus Af293]
          Length = 1384

 Score = 75.3 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 4/92 (4%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLL 59
            M       L+  IGY F + SLL +ALTH S  +    +SY+RLE+LGD +L ++I + +
Sbjct: 1092 MMN---DRLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAI 1148

Query: 60   FNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
            FNH     +G+++   +++V+A   + +  E 
Sbjct: 1149 FNHRIQRPQGDMTKIKHAVVNANLLAFLCMEF 1180



 Score = 40.3 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            +F +   +  A++          +Y+R EFLGD IL   +S  LF    +  EG LS   
Sbjct: 927  SFKSTDHIITAISTP--LAHRLTNYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGR 984

Query: 76   NSLVSAETCSQVARELDLASF 96
            + +V     ++ A +  L ++
Sbjct: 985  DMIVQNPRLAKAALDTGLDAY 1005


>gi|170086892|ref|XP_001874669.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164649869|gb|EDR14110.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 353

 Score = 75.3 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 77/233 (33%), Gaps = 16/233 (6%)

Query: 6   YSTLEKRIGYA--FANRSLLEKALTHSSISHSYQESYER---------LEFLGDRILGLL 54
            S    RIG A    +  L+++A TH S +  Y + Y R         L  LG+ +LGL 
Sbjct: 59  LSAFAHRIGLASILTSTDLIQQACTHPSFTALYSQHYPRETPPSTNAQLVILGNSLLGLF 118

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
            +  L   +             + V   TC+ +A+E+     +R     R      +   
Sbjct: 119 ATEYLNAKYPYLPTRVQKAALTAHVGPATCASIAQEMGATPLVRWHRTPRTSTRPSVLHT 178

Query: 115 QADVVE----SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
            A        + +                    +Q  L+      D K  L E       
Sbjct: 179 DALASVPRALTALVYQQRSLFSARKFVHSYFLSRQIDLRGMLKFLDPKKALLEMVKKFDR 238

Query: 171 VTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             P+ ++   +G   + P F V +        +G   S + AE  AA + L R
Sbjct: 239 EKPKSRLLKETGRFSNSPVFVVGIFSGADQLGEGFGSSLKMAEFRAAEDALHR 291


>gi|46117132|ref|XP_384584.1| hypothetical protein FG04408.1 [Gibberella zeae PH-1]
          Length = 1451

 Score = 75.3 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LE+ IGY F  +SLL +A+TH S  +   Q SYE+LEFLGD +L  ++ T +F     
Sbjct: 1155 EPLEELIGYTFQKKSLLIEAMTHGSYAADGQQRSYEQLEFLGDAVLDYIVVTRMFQSDPP 1214

Query: 66   AKEGELSVRFNSLVSAETCSQVARELD 92
               G L +   ++ +A+  +    +  
Sbjct: 1215 VPNGRLHMVKTAMANADFLAFTNMQHG 1241



 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
              +  L+ +A++  S +      YER+EFLGD +L        ++      EG L+   +
Sbjct: 982  ITDLQLVIEAISSRSAAEPV--DYERIEFLGDSVLKYCTVIQAYSEHPFWPEGLLNHFKD 1039

Query: 77   SLVSAETCSQVARELDLASFIR 98
             LVS    +++  E  L+ FI 
Sbjct: 1040 RLVSNTRLTRMCLETGLSKFIF 1061


>gi|328947077|ref|YP_004364414.1| ribonuclease III [Treponema succinifaciens DSM 2489]
 gi|328447401|gb|AEB13117.1| ribonuclease III [Treponema succinifaciens DSM 2489]
          Length = 369

 Score = 75.3 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 83/252 (32%), Gaps = 37/252 (14%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58
           M+      ++  I Y F N  LLE+A T  S S  + E  + E LEF GD IL   ++ +
Sbjct: 1   MNRQDIGFVQSSINYQFKNLQLLEQAFTRKSYSEEHPELQNNEVLEFYGDEILDFFVTKM 60

Query: 59  LFNHFDSA---------KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
           ++  F             EGEL+   + LVS E+ ++    +  + F+ +     K+   
Sbjct: 61  MYKRFSRILNNELVSEKNEGELTKLKSILVSKESLARCMYNIGFSKFLYLGKSDEKNEVY 120

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK------------------------- 144
              S+  D+ E++I A+  D                                        
Sbjct: 121 KSKSVNEDLFEAIIGAVAADCDWNYEKLEKVCRTMLDMETTNGYLALLVKEKSHRLGFGE 180

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQG 203
                      + +    +           +  T ++       + + V  +       G
Sbjct: 181 PCYRPFAWQTDNPEDWQSDNLFNMGIGFGGFGSTSKNPKTGKHEYGIQVGENKFTGIGDG 240

Query: 204 MDCSKRAAEQVA 215
           +  +K  AEQ A
Sbjct: 241 IAQAKLNAEQKA 252



 Score = 42.6 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 53/194 (27%), Gaps = 11/194 (5%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEG------ELSVRFNSLVSAETCSQ----VA 88
           +YE+LE +   +L +  +          K             F          Q      
Sbjct: 144 NYEKLEKVCRTMLDMETTNGYLALLVKEKSHRLGFGEPCYRPFAWQTDNPEDWQSDNLFN 203

Query: 89  RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI-AALYLDGGIEVAGTFVDKYWKQRA 147
             +    F   S + +     +   +  +    +           E          + + 
Sbjct: 204 MGIGFGGFGSTSKNPKTGKHEYGIQVGENKFTGIGDGIAQAKLNAEQKAYHFLIQEEIKQ 263

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                   +  + L E    K  +   Y+       + +P +     + G    +  + S
Sbjct: 264 QFQNLDYTNPASTLHELFQKKVIMEVRYEFNEYHDENGNPIWNCKAILEGYGTFEADNAS 323

Query: 208 KRAAEQVAAAEVLK 221
           K+  +Q A+ ++LK
Sbjct: 324 KKQVKQDASLKLLK 337


>gi|221125080|ref|XP_002155102.1| PREDICTED: similar to dicer 1 [Hydra magnipapillata]
          Length = 798

 Score = 75.0 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
                E  I Y F+N+S L +A TH S  S+S    Y++ EFLGD IL  LI+  + ++ 
Sbjct: 600 NLHKFEDLISYKFSNKSHLIQAFTHLSYLSNSVTGCYQQYEFLGDAILDFLITLHIQSNT 659

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            +   G+L+   +++V+  T   +A +     +I 
Sbjct: 660 QNLSPGQLTYFRSAVVNNNTFGLLAIKHSFYKYIY 694



 Score = 41.5 bits (95), Expect = 0.088,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 11/153 (7%)

Query: 4   LRYSTLEKRIGY---AFANRSLLE--KALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           L    L +   Y      + S+L+  +ALT      +     ERLE LGD  L   +S  
Sbjct: 383 LDLENLLQLKNYVTENVKSPSVLKIFEALTTR--QANMPFDLERLEILGDSFLKQAVSIF 440

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +F    S  EG+L++R  + +S E   +V + + +    +      +       S   + 
Sbjct: 441 VFFQNPSFHEGKLTIRRKNCISNENLCKVGKSVGI----QNIICNSQFGIKSSNSENRNP 496

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
               +   YL   ++    +  +  + +++   
Sbjct: 497 WTVWLPPGYLRAELDDIKRYTYQNVQPKSIADC 529


>gi|332706107|ref|ZP_08426179.1| RNAse III [Lyngbya majuscula 3L]
 gi|332355199|gb|EGJ34667.1| RNAse III [Lyngbya majuscula 3L]
          Length = 237

 Score = 75.0 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 8/210 (3%)

Query: 5   RYSTLEKRIGYAFA---NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   L +++G +     N SLL+ ALTH SIS    ++YE+LEF+GD ++ L  S  L+ 
Sbjct: 11  QLEKLVQKLGLSKTTAVNWSLLDLALTHCSISAE--DNYEQLEFVGDAVIRLASSEWLWE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++ ++  GE +   + LVS    SQ+AR   L  ++ VS+    D     + +       
Sbjct: 69  NYPNSSVGEFAAIRSVLVSDRILSQLARSYGLERYLLVSNSAAGDKVGETSRLADAFEAI 128

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L A       +E+   ++D + ++    ++    R++ K  LQEW  A + + P+Y +T 
Sbjct: 129 LGALYLSTHTLELVRPWLDPHLQKLTTEIRQDPARQNYKDALQEWTQAHYKLLPKYHLTE 188

Query: 180 RSGPDH-DPRFTVVVEISGLAPAQGMDCSK 208
                  + RFT  V +      +G   SK
Sbjct: 189 NLQVHGANNRFTAQVWLQNRQLGEGTGRSK 218


>gi|298711900|emb|CBJ48587.1| dicer-like 3 [Ectocarpus siliculosus]
          Length = 1557

 Score = 75.0 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 22/183 (12%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS-------YQESYERLEFLGDRILGL 53
            M  +R   LEKR+GY F    L  +A+TH S + +         + Y+RLEFLGD +LG 
Sbjct: 1318 MGNIRL--LEKRLGYTFRYPWLCMQAITHPSWTINDIPPGTVPAQDYQRLEFLGDAVLGW 1375

Query: 54   LISTLLFNHFDSAKEGELSVRFNS--LVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
            +++  L+    +    EL+    +   V   +   +A  LD+   +R S  +   + +F+
Sbjct: 1376 MVTAHLYFASSAFTPAELTRIKVTSSCVCNASLWVIALRLDVHHVLRASPKILGHIHAFI 1435

Query: 112  -----------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
                           ADV+E+LI A+++D    +  + + +    R     K   D    
Sbjct: 1436 ENNGVSGTGTAPKHPADVLEALIGAVFIDSSCCMNASLLLEGAPPRMSMRTKAWADMAFA 1495

Query: 161  LQE 163
            +  
Sbjct: 1496 VTM 1498


>gi|297815500|ref|XP_002875633.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297321471|gb|EFH51892.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1521

 Score = 75.0 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 61/95 (64%), Gaps = 2/95 (2%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             + LE++I + F+ + LL++A+THSS+  SY  SYERLEFLGD +L  LI+  LFN ++ 
Sbjct: 1139 LTELERKIQHEFSAKFLLKEAITHSSVHESY--SYERLEFLGDSVLDFLITRHLFNTYEQ 1196

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
               GE++   ++ V+ E  +QVA + +L   ++  
Sbjct: 1197 TGPGEMTDLRSACVNNENFAQVAVKNNLHIHLQRC 1231


>gi|195996297|ref|XP_002108017.1| hypothetical protein TRIADDRAFT_52064 [Trichoplax adhaerens]
 gi|190588793|gb|EDV28815.1| hypothetical protein TRIADDRAFT_52064 [Trichoplax adhaerens]
          Length = 707

 Score = 75.0 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 44/93 (47%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +++E  + Y+F NRSLL  ALTH S S     SYE+L FLGD +L   I   L+  +   
Sbjct: 441 NSVETILNYSFRNRSLLMLALTHKSYSGLESISYEKLAFLGDTLLIYQICLFLYTQYTDY 500

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
           +  +  +    L        VA   DL  F+  
Sbjct: 501 QPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLH 533



 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 2/123 (1%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L +A+T SS    +  + ERLEFLGDR L   I+        S    E+  R   L   +
Sbjct: 269 LLEAITLSSAQDHF--NLERLEFLGDRYLNYKITLTTLLEHPSWSINEVINRMRFLTKNK 326

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              ++     +  +I      +         +    V  L  A+  +   +         
Sbjct: 327 KLFRLGAGRRIPYYIVGCPFNQNKSWVPPGFVINQTVSELSIAMSREYTHQPLTKKAIAD 386

Query: 143 WKQ 145
             +
Sbjct: 387 CVE 389


>gi|167046032|gb|ABZ10547.1| dicer-like protein E [Trichoplax adhaerens]
          Length = 359

 Score = 75.0 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 44/93 (47%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +++E  + Y+F NRSLL  ALTH S S     SYE+L FLGD +L   I   L+  +   
Sbjct: 171 NSVETILNYSFRNRSLLMLALTHKSYSGLESISYEKLAFLGDTLLIYQICLFLYTQYTDY 230

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
           +  +  +    L        VA   DL  F+  
Sbjct: 231 QPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLH 263



 Score = 41.5 bits (95), Expect = 0.094,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 2/121 (1%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +A+T SS    +  + ERLEFLGDR L   I+        S    E+  R   L   +  
Sbjct: 1   EAITLSSAQDHF--NLERLEFLGDRYLNYKITLTTLLEHPSWSINEVINRMRFLTKNKKL 58

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
            ++     +  +I      +         +    V  L  A+  +   +           
Sbjct: 59  FRLGAGRRIPYYIVGCPFNQNKSWVPPGFVINQTVSELSIAMSREYTHQPLTKKAIADCV 118

Query: 145 Q 145
           +
Sbjct: 119 E 119


>gi|154300125|ref|XP_001550479.1| hypothetical protein BC1G_10438 [Botryotinia fuckeliana B05.10]
 gi|150856727|gb|EDN31919.1| hypothetical protein BC1G_10438 [Botryotinia fuckeliana B05.10]
          Length = 1398

 Score = 75.0 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 1/118 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
               +E+ + Y F  +SLL +A+TH S +    +S ERLEFLGD IL  +I T +++H   
Sbjct: 1087 LRPVEQILAYTFTKKSLLVEAMTHPSYTSG-TQSLERLEFLGDSILDNIIVTAMWSHSTP 1145

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                 + +  ++LV+A+  + +  E+ +   +   ++ +        S +   + S +
Sbjct: 1146 LSHFHMHLLRSALVNADFLAFLCMEMSIDQNVTNLTEGKNHRIHETHSRRRVSLVSFL 1203



 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 8/93 (8%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
               LE       +++SL++ A+TH+S S     +Y+RLEFLGD IL L  S  L      
Sbjct: 959  LKDLE------ISDQSLIQTAITHASYS--LDSNYQRLEFLGDSILKLCTSVQLVAEHLD 1010

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
              EG LS   + +VS    S+ A E+ L  +I 
Sbjct: 1011 WHEGYLSAMKDRIVSNSRSSRAAAEVGLDEYIM 1043


>gi|100271832|gb|ABF69320.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 137

 Score = 75.0 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 73/133 (54%)

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           +L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A    
Sbjct: 1   NLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I+          +K+ A
Sbjct: 61  VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVGINSHETLHATGQNKKLA 120

Query: 212 EQVAAAEVLKREG 224
           EQ AA+ +L +  
Sbjct: 121 EQKAASLMLAKIN 133


>gi|226295027|gb|EEH50447.1| abhydrolase domain-containing protein [Paracoccidioides
           brasiliensis Pb18]
          Length = 723

 Score = 75.0 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 22/221 (9%)

Query: 23  LEKA-LTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           L+ A  TH  ++            +++YERLE LGD  + +  + L+++ F   + G LS
Sbjct: 156 LQTAIFTHEGVNDPTNTTTTTASTEKNYERLELLGDAYIEIFATRLVWDTFPRLRAGRLS 215

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV  ET ++ A    L   ++V++++R+      T ++ D+ E+ +AA+ L    
Sbjct: 216 QIREMLVKNETLAEYATRYGLDRRLQVAAEIRRQ-AKTWTKVRGDLFEAYVAAVILSHPK 274

Query: 133 ---EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG---PDHD 186
              E+   ++ + W  R     + R   + + +              V  R G       
Sbjct: 275 RGVEMVEEWLTQLWIPRLEGVERERPVLRYKEELAKMVMDKGVRVRYVDEREGVQRKGGL 334

Query: 187 PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222
             F V V + G     +    G   SK  A   AA + L+ 
Sbjct: 335 QTFFVGVYLDGWGFRDVCLGTGTGMSKVIAGNEAARKALEN 375


>gi|295657108|ref|XP_002789127.1| abhydrolase domain-containing protein [Paracoccidioides
           brasiliensis Pb01]
 gi|226284541|gb|EEH40107.1| abhydrolase domain-containing protein [Paracoccidioides
           brasiliensis Pb01]
          Length = 740

 Score = 75.0 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 22/221 (9%)

Query: 23  LEKA-LTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           L+ A  TH  ++            +++YERLE LGD  + +  + L+++ F   + G LS
Sbjct: 151 LQTAIFTHEGVNDPTNTTTTTTSTEKNYERLELLGDAYIEIFATRLVWDTFPRLRAGRLS 210

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV  ET ++ A    L   ++V++++R+      T ++ D+ E+ +AA+ L    
Sbjct: 211 QIREMLVKNETLAEYATRYGLDRRLQVAAEIRRQ-AKTWTKVRGDLFEAYVAAVILSHPK 269

Query: 133 ---EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG---PDHD 186
              E+   ++ + W  R     + R   + + +              V  R G       
Sbjct: 270 RGVEMVEEWLTQLWIPRLEGVERERPVLRYKEELAKMVMDKGVRVRYVDEREGVQRKGGL 329

Query: 187 PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222
             F V V + G     +    G   SK  A   AA + L+ 
Sbjct: 330 QTFFVGVYLDGWGFRDVCLGTGTGMSKVIAGNEAARKALEN 370


>gi|322704697|gb|EFY96289.1| Dicer-like protein 1 [Metarhizium anisopliae ARSEF 23]
          Length = 1476

 Score = 75.0 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 1/101 (0%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSA 66
             ++  IGY F +  LL  A  H S  +  +  +Y+RLEFLGD +L + I   LF  +  A
Sbjct: 1199 KVKASIGYNFRSPKLLRSAFKHPSYPYEPELPNYQRLEFLGDALLDVAIVDFLFQRYPLA 1258

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                L+    ++ S    S +  EL L   I  +       
Sbjct: 1259 DPQWLTEHKMAMASNHFFSFLCVELGLHRHILSTGSSIMGH 1299



 Score = 43.0 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 22   LLEKALT--HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
            L  +ALT     +     ++YERLEFLGD  L +  +  LF    +  E E  V    L+
Sbjct: 1019 LALEALTKGEEDVDVQTSKNYERLEFLGDAFLKMATTISLFTLIPNRNEFEYHVERMILI 1078

Query: 80   SAETCSQVARELDLASFIR 98
              +     A +  L  ++R
Sbjct: 1079 CNKNLFNHAVDRGLQEYVR 1097


>gi|255521158|ref|ZP_05388395.1| ribonuclease III [Listeria monocytogenes FSL J1-175]
          Length = 147

 Score = 74.6 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 1/144 (0%)

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
             +  + A  +  + ++R+     K       ++ ADV ES I ALYLD GI+   TF++
Sbjct: 1   EPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLE 60

Query: 141 KYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
           +    +          D KT+LQE       V  EY +   +GP H+  F   V ++G  
Sbjct: 61  RVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQV 120

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
             +G   +K+ AEQ AA   + + 
Sbjct: 121 LGKGSGRTKKQAEQSAAQFAINQL 144


>gi|330944921|ref|XP_003306459.1| hypothetical protein PTT_19601 [Pyrenophora teres f. teres 0-1]
 gi|311316023|gb|EFQ85435.1| hypothetical protein PTT_19601 [Pyrenophora teres f. teres 0-1]
          Length = 1448

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNH 62
            +    +EK +GY F N++LL +ALTH +        SYER EFLGD +L  ++S  L+ H
Sbjct: 1159 MSLGLIEKLLGYKFNNKALLLEALTHVTFRGLNTNCSYERHEFLGDAVLDYIVSRKLYAH 1218

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVAR 89
                   ++     ++V+A   +    
Sbjct: 1219 KPELSHRKMHGIRTAMVNASFLAYSMF 1245



 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 19   NRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            N  L  L  ALT  S + +    Y+RLEFLGD IL  + S  L        EG L+ +  
Sbjct: 992  NLHLPVLVTALT--SSATNEGNDYQRLEFLGDCILKFIASLHLMAANLQMPEGMLTGKKG 1049

Query: 77   SLVSAETCSQVARELDLASFIRVSS 101
             LVS    ++      L  +I    
Sbjct: 1050 KLVSNGYLARATLAAGLDQYIFYKR 1074


>gi|268611358|ref|ZP_06145085.1| dsRNA-spesific ribonuclease [Ruminococcus flavefaciens FD-1]
          Length = 512

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 88/263 (33%), Gaps = 37/263 (14%)

Query: 1   MSALRYS---------TLEKRIGYAFANRSLLEKALTHS--SISHSYQESYERLEFLGDR 49
           M+ ++++          + + IGY F N +LL +A T    SI +  +ES E LEF GD+
Sbjct: 149 MNTMKFAASPDKDPAIKIAQIIGYHFNNDNLLRQAFTRRAFSIEYGLEESNEILEFFGDQ 208

Query: 50  ILGLLISTLLFNHFDSAKEG-------------ELSVRFNSLVSAETCSQVARELDLASF 96
           +L ++I+  +++ F                   EL+   +  ++ E  S  A EL L  +
Sbjct: 209 VLSMIITREMYSSFIVYSNHSVEAPFTSKFNEGELTKIRSKFINKEHLSARAAELGLDKY 268

Query: 97  IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
           I   +       +    ++A +      + +    IE     +   +     +  +    
Sbjct: 269 ILYGTGEEPGDSAREDMMEALIGAVAADSNWNWKVIEDVVDKLVALYFGNTERLLEESAY 328

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV----VVEISGLAPAQGM------DC 206
            +       H       E +           R+       V  +                
Sbjct: 329 DRLNKWHQKHFGCMPEYEVRRVCTDEDSPSSRYICTLRYSVPSNDKGIRNAQRIDGRPGF 388

Query: 207 SKRAAEQVAAAEVL---KREGIW 226
           S+  A    A   L   K+ G+W
Sbjct: 389 SRSMARAYCANMALIFIKKHGLW 411


>gi|258614465|ref|ZP_05712235.1| ribonuclease III [Enterococcus faecium DO]
          Length = 97

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 1  MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
          M       L++     F + +LLE+A THSS  + ++       ERLEFLGD +L L++S
Sbjct: 1  MDNQLTKELKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVS 60

Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
            LF  +    EG+L+   +   S     ++ + +
Sbjct: 61 QYLFRLYPHLPEGKLTKNTSCDRSRRQLVEICQRM 95


>gi|296417821|ref|XP_002838549.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634492|emb|CAZ82740.1| unnamed protein product [Tuber melanosporum]
          Length = 1490

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFD 64
               LE  IGY F +++LL +A+TH S        SY+R+EFLGD +L +++   LF    
Sbjct: 1105 LKGLESLIGYHFTHKALLLEAITHPSWESDMTSLSYQRMEFLGDALLDMVVVNHLFFSPR 1164

Query: 65   SAKEGELSVRFNSLVSAET 83
            +    ++ +  +S+V+   
Sbjct: 1165 NLSHIDMHLYKSSVVNGNF 1183



 Score = 38.8 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 7   STLEKRIGYA--FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + LE+ + +   F +   +  AL+ SS   S    Y+R EFLGD +L  L S  L +   
Sbjct: 919 ADLERTLLHPVGFNSIPKMVTALSASSAREST--DYQRFEFLGDSVLKFLTSVNLLDEHP 976

Query: 65  SAKEGELSVRFNSLVSA 81
              EG L+ +   +V+ 
Sbjct: 977 FWHEGYLTRKKEQMVAN 993


>gi|327349134|gb|EGE77991.1| dicer [Ajellomyces dermatitidis ATCC 18188]
          Length = 1482

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 45/86 (52%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY+F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN   +
Sbjct: 1151 FQEIESLLGYSFNKKVFLVQAFTHPSNPGSTTSSYQRLEFVGDAILDHIIVHHLFNSSRN 1210

Query: 66   AKEGELSVRFNSLVSAETCSQVAREL 91
                ++ +   +L +A+  + +   +
Sbjct: 1211 LPHFDMHLMRTALANADFLAFLCIGM 1236



 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 8/121 (6%)

Query: 1    MSALRYSTLEKRIG------YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54
            M  +    + +++        AF + SL+  A++ +S++     +Y+R+EFLGD IL   
Sbjct: 956  MHKVEIYLIAEQLNKTILKPVAFTDLSLVVTAIS-ASVARE-ATNYQRIEFLGDSILKFH 1013

Query: 55   ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
             +  L        EG LS   +++VS +  S  A E  L  FI V              +
Sbjct: 1014 TTLQLSAANLVWHEGLLSRAKDNVVSNKRLSYAAVETGLDKFILVDVFTGAKWRPRYNKV 1073

Query: 115  Q 115
             
Sbjct: 1074 H 1074


>gi|239610437|gb|EEQ87424.1| dicer-like protein 2 [Ajellomyces dermatitidis ER-3]
          Length = 1509

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 45/86 (52%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY+F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN   +
Sbjct: 1177 FQEIESLLGYSFNKKVFLVQAFTHPSNPGSTTSSYQRLEFVGDAILDHIIVHHLFNSSRN 1236

Query: 66   AKEGELSVRFNSLVSAETCSQVAREL 91
                ++ +   +L +A+  + +   +
Sbjct: 1237 LPHFDMHLMRTALANADFLAFLCIGM 1262



 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 8/121 (6%)

Query: 1    MSALRYSTLEKRIG------YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54
            M  +    + +++        AF + SL+  A++ +S++     +Y+R+EFLGD IL   
Sbjct: 982  MHKVEIYLIAEQLNKTILKPVAFTDLSLVVTAIS-ASVARE-ATNYQRIEFLGDSILKFH 1039

Query: 55   ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
             +  L        EG LS   +++VS +  S  A E  L  FI V              +
Sbjct: 1040 TTLQLSAANLVWHEGLLSRAKDNVVSNKRLSYAAVETGLDKFILVDVFTGAKWRPRYNKV 1099

Query: 115  Q 115
             
Sbjct: 1100 H 1100


>gi|261195592|ref|XP_002624200.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081]
 gi|239588072|gb|EEQ70715.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081]
          Length = 1509

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 45/86 (52%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY+F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN   +
Sbjct: 1177 FQEIESLLGYSFNKKVFLVQAFTHPSNPGSTTSSYQRLEFVGDAILDHIIVHHLFNSSRN 1236

Query: 66   AKEGELSVRFNSLVSAETCSQVAREL 91
                ++ +   +L +A+  + +   +
Sbjct: 1237 LPHFDMHLMRTALANADFLAFLCIGM 1262



 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 8/121 (6%)

Query: 1    MSALRYSTLEKRIG------YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54
            M  +    + +++        AF + SL+  A++ +S++     +Y+R+EFLGD IL   
Sbjct: 982  MHKVEIYLIAEQLNKTILKPVAFTDLSLVVTAIS-ASVARE-ATNYQRIEFLGDSILKFH 1039

Query: 55   ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
             +  L        EG LS   +++VS +  S  A E  L  FI V              +
Sbjct: 1040 TTLQLSAANLVWHEGLLSRAKDNVVSNKRLSYAAVETGLDKFILVDVFTGAKWRPRYNKV 1099

Query: 115  Q 115
             
Sbjct: 1100 H 1100


>gi|328773741|gb|EGF83778.1| hypothetical protein BATDEDRAFT_85615 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1746

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 82/244 (33%), Gaps = 30/244 (12%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +++++ Y F N  LL  AL         +  +ERLEFLGD I+ +L++   + H+  A  
Sbjct: 1484 VQQKLSYNFHNPELLLIALMTPFYFVKSK--FERLEFLGDAIMDILVARYFYRHYKHADP 1541

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD---------------------- 106
              LS    + V      ++   L L   +  SS L +                       
Sbjct: 1542 CSLSKMIQATVCKPAFCKILVSLKLHEHLLQSSQLSQHSKEAIVLYANYIQNSHSQHAFK 1601

Query: 107  ---VCSFMTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
                      +  DV E ++AA+++D G   E     +  Y       +       +  +
Sbjct: 1602 QADKAIDGPKVLCDVFEVIVAAIFIDTGYNLERTRLVIFPYVHSFIQSNINLETITEPPI 1661

Query: 162  QEWAHAKFGVTPEYKVTFRSGPDHDPRF-TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            ++            +    S   +   F    V   G   A     + + A+Q A+ + L
Sbjct: 1662 RQLFAFVQSQGFSSEKLELSDESNADGFHKASVVFYGTVLATSQATTLKLAKQHASIKAL 1721

Query: 221  KREG 224
                
Sbjct: 1722 NVLK 1725



 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 7    STLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  +++ G       L  L  A T  + +     +YERLE LGD++L   ++  L + + 
Sbjct: 1282 AEFDQKYGLYPKQIPLSTLMSAFTTPAANSIT--NYERLETLGDKVLKFGVAHYLHSSYQ 1339

Query: 65   SAKEGELSVRFNSLVSAETCSQVAREL 91
            S + G+LS   + LVS +   ++A++ 
Sbjct: 1340 SYEVGQLSTILSGLVSNKNLFEIAQQH 1366


>gi|85083779|ref|XP_957185.1| hypothetical protein NCU01762 [Neurospora crassa OR74A]
 gi|7800875|emb|CAB91233.1| related to Ribonuclease III [Neurospora crassa]
 gi|28918272|gb|EAA27949.1| predicted protein [Neurospora crassa OR74A]
          Length = 352

 Score = 74.6 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 79/245 (32%), Gaps = 37/245 (15%)

Query: 19  NRSLLEKALTHS-SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           + +L + ALTH    ++    SYERLE++GD  L L+ S+ ++  F +   G+ + R   
Sbjct: 67  DPALKKAALTHPGKANNDPVASYERLEWIGDAYLELIASSFIYQTFPTLPAGKSAQRREM 126

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDV--------CSFMTSIQADVVESLIAALY-- 127
           L+   T  + +    L     +  +   +               I  D+ E+ +  +   
Sbjct: 127 LIRNTTLGEFSVYYGLDKMADIPEEFNMEGRVGGTNASQKVRIKILGDLFEAYVGGVILS 186

Query: 128 -----LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
                +    +           +   +  K  R  + +           T         G
Sbjct: 187 DPANGIQRASDWLKALWGPLMAEYIREEEKKARKPEQKQSASGQTLDPKTVLEATIGARG 246

Query: 183 --------PDHD--------PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLK 221
                   P  +        P F +   ++G     L    G   SK+ A Q AA   L 
Sbjct: 247 VKIEYKDLPSKNLKDRGTKLPLFAIGCFMTGWGETNLQLGHGSALSKKEAGQKAAQMALD 306

Query: 222 REGIW 226
            + + 
Sbjct: 307 NKKLL 311


>gi|167046034|gb|ABZ10548.1| dicer-like protein E [Placozoa sp. DMJ-2008]
          Length = 359

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 44/93 (47%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +++E  + Y+F NRSLL  ALTH S S     SYE+L FLGD +L   I   L+  +   
Sbjct: 171 NSVETILNYSFRNRSLLMLALTHKSYSGLESISYEKLAFLGDTLLIYQIYLFLYTQYTDY 230

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
           +  +  +    L        VA   DL  F+  
Sbjct: 231 QPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLH 263



 Score = 41.5 bits (95), Expect = 0.094,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 2/121 (1%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +A+T SS    +  + ERLEFLGDR L   I+        S    E+  R   L   +  
Sbjct: 1   EAITLSSAQDHF--NLERLEFLGDRYLNYKITLTTLLEHPSWSINEVINRMRFLTKNKKL 58

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
            ++     +  +I      +         +    V  L  A+  +   +           
Sbjct: 59  FRLGAGRRIPYYIVGCPFNQNKSWVPPGFVINQTVSELSIAMSREYTHQPLTKKAIADCV 118

Query: 145 Q 145
           +
Sbjct: 119 E 119


>gi|169868762|ref|XP_001840952.1| hypothetical protein CC1G_03181 [Coprinopsis cinerea okayama7#130]
 gi|116498110|gb|EAU81005.1| hypothetical protein CC1G_03181 [Coprinopsis cinerea okayama7#130]
          Length = 2074

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63
            + + +E  +GY F  + LL +ALTH+S   H    SYER+EF+GD IL ++++ +L+   
Sbjct: 1732 QLADVEHMLGYTFKRKILLIEALTHASYREHINTISYERMEFIGDSILDMVVTDMLYRAP 1791

Query: 64   DSAKEGELSVRFNSLVSAETCSQVA 88
                 G + +R +++V+    + + 
Sbjct: 1792 REYSPGHIHLRRSAVVNGHFLAYIC 1816



 Score = 40.3 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 21   SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
             +L  ALT        + +Y+RLE LGD +L  L    +F  +    EG L+ R +  V+
Sbjct: 1491 DVLTVALTAP--VAGERHNYQRLETLGDTVLKFLAGIQIFAEYPMWHEGYLTKRKDHAVA 1548

Query: 81   AETCSQVARELDLASFIRVSS 101
                ++   +  +  +I    
Sbjct: 1549 NVRLAKECVKRGVVRWIIRDR 1569


>gi|289425710|ref|ZP_06427468.1| RNase3 domain protein [Propionibacterium acnes SK187]
 gi|289153883|gb|EFD02586.1| RNase3 domain protein [Propionibacterium acnes SK187]
          Length = 146

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 3/128 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           + ++ L + +G        L  ALTH S ++      + ERLEFLGD +LGL +++ L+ 
Sbjct: 20  VDHTPLLESLGVDLQ-PEHLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVASQLYI 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + S  E ++S    S+VS    S +ARE++L   I +    +        SI AD  E+
Sbjct: 79  TYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTEA 138

Query: 122 LIAALYLD 129
           +  A+Y +
Sbjct: 139 IFGAIYRE 146


>gi|15242329|ref|NP_199328.1| RTL3 (RNase three-like protein 3); RNA binding / double-stranded
           RNA binding / ribonuclease III [Arabidopsis thaliana]
 gi|75171238|sp|Q9FKF0|RTL3_ARATH RecName: Full=Ribonuclease 3-like protein 3; AltName:
           Full=Ribonuclease III-like protein 3; Short=RNase
           III-like protein 3; AltName: Full=Ribonuclease
           three-like protein 3
 gi|9759600|dbj|BAB11388.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007827|gb|AED95210.1| RNAse THREE-like protein 3 [Arabidopsis thaliana]
          Length = 957

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 80/239 (33%), Gaps = 22/239 (9%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M +     +EK + Y+F N++LL++ LTH     +    ++ L F+G+  L L  +  L+
Sbjct: 411 MDS-SVEAVEKILNYSFVNKTLLKELLTH-----NNSPLFQGLMFVGESALSLAFTKHLY 464

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLR 104
             +   +  +LSV  ++    +  + VA +  +                     +  +  
Sbjct: 465 LTYPMLEPKDLSVLRDANTCHDKYACVAVKKGIYQSFIGSVPKPEKMTTDFIELMGKEDD 524

Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW 164
                    I  +++  +  A+Y+D    V             + +    R    +    
Sbjct: 525 PYRVVKAPKILVNLLAGVAGAVYIDVKYNVQRLLEIFRVLLEPIYTLDDLRMQLKQPFLM 584

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                    +      S      +    V +  +  A G       A+ +AA E +++ 
Sbjct: 585 LFRLADKHGKQIDFRYSKDGGSRKNIAQVYMDDMFIASGCAKRIDTAKLLAAEEAIQKL 643



 Score = 70.7 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 8/111 (7%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+++    +EK + Y+F N++LL++A+T  S        ++RLEF GD IL +  +  + 
Sbjct: 1   MNSV--EAVEKILNYSFVNKTLLKEAITQKS------PLFDRLEFFGDSILEVAFTNYIC 52

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
           + + + K  EL     + VS E  +++A   +L  F+ + +          
Sbjct: 53  HTYPNLKVKELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNF 103



 Score = 41.8 bits (96), Expect = 0.066,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 6/117 (5%)

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
            +        +       G  +      K              + + EL E         
Sbjct: 264 KLFEICYTRKLQIQTGSSGNPLTYEMTTKQMVVDKDSLHVEPVNGRGELIEICTKNKWPR 323

Query: 173 PEYKVTFRSGPDHDPRFTVVVE-----ISGLAPAQGMDCSKRA-AEQVAAAEVLKRE 223
           P + V    GP ++P+F   V+     I G    +G   SK+  AE   A  +++  
Sbjct: 324 PIFSVQEEKGPKNEPKFVCSVKIEIPNIEGTFHMKGDIKSKKKQAENSLAYHMIRAL 380


>gi|83772763|dbj|BAE62891.1| unnamed protein product [Aspergillus oryzae]
          Length = 1374

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 20/124 (16%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65
             +E+++GY F    LL  A TH S   ++ +   Y+RLEFLGD +L ++    LF  +  
Sbjct: 1155 KVEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPD 1214

Query: 66   AKEGELSVR------------------FNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                 L+                      ++VS +    +A +L L + +R  S+  +  
Sbjct: 1215 KDPQWLTEHKVSVRLFVSTKHLLTITLQMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQ 1274

Query: 108  CSFM 111
             +  
Sbjct: 1275 ITHY 1278



 Score = 44.9 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 38/138 (27%), Gaps = 24/138 (17%)

Query: 6    YSTLE--KRIGYAFANRSLLEKALT--------HS----SISHSYQESYERLEFLGDRIL 51
               LE  K +  +        +A T        H      +     ++YERLEFLGD  L
Sbjct: 942  LIALEGCKTLDLSVK-PEYALEAFTKDSDNTEEHRVQQIHVQRGMGKNYERLEFLGDCFL 1000

Query: 52   GLLISTLLFNHFDSAKEGELSVRFNSLVSAET---------CSQVARELDLASFIRVSSD 102
             +  S  LF       E +  V    L+  +            Q  R    +        
Sbjct: 1001 KMATSISLFVQNPDDDEFDFHVNRMCLICNKNLFNTALKKELYQYTRSRGFSRHTWYPDG 1060

Query: 103  LRKDVCSFMTSIQADVVE 120
            L            +   +
Sbjct: 1061 LTLLHGRDHRKKISAESK 1078


>gi|289620343|emb|CBI53201.1| unnamed protein product [Sordaria macrospora]
          Length = 345

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 83/237 (35%), Gaps = 29/237 (12%)

Query: 19  NRSLLEKALTHS-SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           + +L + ALTH    ++    SYERLE++GD  L L+ S+ ++  F +   G+ + R   
Sbjct: 68  DPALKKAALTHPGKANNDPVASYERLEWIGDAYLELIASSFIYQTFPTLPAGKSAQRREM 127

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDV--------CSFMTSIQADVVESLIAALYLD 129
           L+   T  + +    L +   +  +   +               I  D+ E+ +  + L 
Sbjct: 128 LIRNTTLGEFSVYYGLDNMADIPEEFNMEGRVGGTNASQKVRVKILGDLFEAYVGGVILS 187

Query: 130 GG-------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
                     +           +   +  K  +  +    +            K+ ++  
Sbjct: 188 DPANGIQRVSDWLKALWGPLMAEYIREEEKKSKSGQAHDPKTILEAAIGARGVKIEYKDL 247

Query: 183 PDHD--------PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           P  +        P F +   ++G     L    G   SK+ A Q AA   L+ + + 
Sbjct: 248 PSKNLKDRGTKLPLFAIGCFMTGWGETNLQLGFGSALSKKEAGQKAAQMALENKKLL 304


>gi|170099920|ref|XP_001881178.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164643857|gb|EDR08108.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1469

 Score = 74.2 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
            +   +E  +GY F ++ LL +ALTH+S         SYER+EFLGD IL ++++  L+  
Sbjct: 1154 QLVDVESMLGYTFNHKLLLIEALTHASYQQDQYTSSSYERMEFLGDSILDMIVTDYLYRA 1213

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
                          S V                F
Sbjct: 1214 PGKEYSPGHMHLRKSAVVNAHFLAFICLRTCLHF 1247



 Score = 42.6 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 22   LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
            LL  A+T  S   + +++Y+RLE LGD +L  +    L + +    EG L+ + +  VS 
Sbjct: 970  LLMVAITAPS--SNERKNYQRLETLGDTVLKFVCGIQLLSEYPLWHEGYLTRKKDHAVSN 1027


>gi|226355144|ref|YP_002784884.1| hypothetical protein Deide_03100 [Deinococcus deserti VCD115]
 gi|226317134|gb|ACO45130.1| Conserved hypothetical protein [Deinococcus deserti VCD115]
          Length = 135

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                 GP H+  F  VV + G     G   SK+ AE++AA E L+  G
Sbjct: 21  FEVETHGPAHERLFRAVVMVDGQQLGSGEGRSKKDAERLAAEEALQALG 69


>gi|33864688|ref|NP_896247.1| putative ribonuclease III [Synechococcus sp. WH 8102]
 gi|33632211|emb|CAE06667.1| putative ribonuclease III [Synechococcus sp. WH 8102]
          Length = 238

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 87/212 (41%), Gaps = 9/212 (4%)

Query: 6   YSTLEKRIGYAFAN-RSLL---EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             +L KR+G    +  SLL   E+A+TH+S      +  ERLEFLGD +L L  +  L  
Sbjct: 9   LKSLIKRLGLEDMDSPSLLLEVERAMTHTS--SGRTDHNERLEFLGDAVLRLAATLYLDR 66

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H      G+ S     LVS    +++   +D+ S + +      D  +  T         
Sbjct: 67  HHPGLTVGDSSSLRAQLVSDRWLAELGEAIDIESCLILGVKALGDAAARTTIRADATEAL 126

Query: 122 LIAALYLDGGIEVA--GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + A   + G +E                + +   R + KT LQEW+  +    PEY    
Sbjct: 127 IGALYKVSGSLEPILGWLTPHWQRTSADVLAAPHRFNGKTTLQEWSQGQGLGLPEYSTEE 186

Query: 180 RSGPDHDP-RFTVVVEISGLAPAQGMDCSKRA 210
           RS    DP RF   V ++    A+G   S++ 
Sbjct: 187 RSQVHGDPQRFRSTVRVASKVLAEGHGRSRKE 218


>gi|195995859|ref|XP_002107798.1| hypothetical protein TRIADDRAFT_51673 [Trichoplax adhaerens]
 gi|190588574|gb|EDV28596.1| hypothetical protein TRIADDRAFT_51673 [Trichoplax adhaerens]
          Length = 1418

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 1/109 (0%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +    E+ +GY F N   L  A THSS       +YE+LEF+GD IL  L+   LF    
Sbjct: 1221 KLHKFEENLGYKFINIDYLILAFTHSSSEFGDSFNYEKLEFVGDSILNYLVIKYLF-LAT 1279

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
                      +   +S E    ++   +       S  +++ +  F   
Sbjct: 1280 DQDITRSKFFYGIAISNEVYGLLSYAYNFHHLFYQSPFVKEMILGFEKK 1328


>gi|225554674|gb|EEH02970.1| RNase3 domain-containing protein [Ajellomyces capsulatus G186AR]
          Length = 380

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 80/218 (36%), Gaps = 22/218 (10%)

Query: 23  LEKA-LTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           L+ A  TH  + +       +++YER+E LGD  + ++ + L+++ F     G LS    
Sbjct: 139 LQTAMFTHEGVHNPNTAPLPEKNYERMELLGDAYIEIIATRLVWDTFPRLPAGRLSQIRE 198

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            LV  ET ++      L   ++V  ++R       T I+ D+ E+ +AA+ L        
Sbjct: 199 LLVKNETLAEYTSLYGLDQKLQVPPNIRDQ-AKTWTKIKGDLFEAYVAAVILSNREYGVQ 257

Query: 137 TFVDKYWKQRAL--------KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
              D   +            K     ++   +L      K     E +    SG      
Sbjct: 258 LAEDWLTQLWIPKLEQIEKDKPMLRYKEDLAKLVMDKGIKLSYLDEKQSICHSG--GLQT 315

Query: 189 FTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F V V +            G   SK  A   AA + L+
Sbjct: 316 FFVGVYLTGWGHKNECLGSGTGFSKVIAGNEAARKALE 353


>gi|317035030|ref|XP_001400925.2| ATP-dependent helicase dcl2 [Aspergillus niger CBS 513.88]
          Length = 1407

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62
            L    L   IGY F N+SLL ++LTH S    +  +SY+RLEFLGD +L + I + L +H
Sbjct: 1092 LNDDHLMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQRLEFLGDAVLDMAIMSTLLSH 1151

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVAREL 91
                 +G ++   +++V+A   +    E 
Sbjct: 1152 PREIPQGLMTKIKHAVVNANLLAFFCMEF 1180



 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 5/179 (2%)

Query: 10   EKRI-GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            E  +    F++   +  A+T  S       +Y+R EF GD +L   +S  LF    +  E
Sbjct: 920  ETILRDLEFSSIRHIITAITAPSAQS--LTNYQRYEFFGDSVLKFTVSCQLFFQHPNWHE 977

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            G LS   + +V     ++ A +  L +FI  ++ +  +         I     +  ++  
Sbjct: 978  GYLSEGRDEIVQNSRLARAALDAGLDAFIMNKMFTPRKWSAPLISEKISLTPKQRTMSTK 1037

Query: 127  YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
             L   +E             A  +   R   +  L+        +  +         DH
Sbjct: 1038 VLADVVEALIGASYIDGGFAAAHACIHRFLPEVNLENIDRTTAPMPKDGVTNHTLNDDH 1096


>gi|158706449|sp|A2R345|DCL21_ASPNC RecName: Full=Dicer-like protein 2-1; Includes: RecName:
            Full=Endoribonuclease dcl2-1; Includes: RecName:
            Full=ATP-dependent helicase dcl2-1
          Length = 1387

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62
            L    L   IGY F N+SLL ++LTH S    +  +SY+RLEFLGD +L + I + L +H
Sbjct: 1092 LNDDHLMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQRLEFLGDAVLDMAIMSTLLSH 1151

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVAREL 91
                 +G ++   +++V+A   +    E 
Sbjct: 1152 PREIPQGLMTKIKHAVVNANLLAFFCMEF 1180



 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 5/179 (2%)

Query: 10   EKRI-GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            E  +    F++   +  A+T  S       +Y+R EF GD +L   +S  LF    +  E
Sbjct: 920  ETILRDLEFSSIRHIITAITAPSAQS--LTNYQRYEFFGDSVLKFTVSCQLFFQHPNWHE 977

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            G LS   + +V     ++ A +  L +FI  ++ +  +         I     +  ++  
Sbjct: 978  GYLSEGRDEIVQNSRLARAALDAGLDAFIMNKMFTPRKWSAPLISEKISLTPKQRTMSTK 1037

Query: 127  YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
             L   +E             A  +   R   +  L+        +  +         DH
Sbjct: 1038 VLADVVEALIGASYIDGGFAAAHACIHRFLPEVNLENIDRTTAPMPKDGVTNHTLNDDH 1096


>gi|134081603|emb|CAK46537.1| unnamed protein product [Aspergillus niger]
          Length = 1352

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62
            L    L   IGY F N+SLL ++LTH S    +  +SY+RLEFLGD +L + I + L +H
Sbjct: 1057 LNDDHLMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQRLEFLGDAVLDMAIMSTLLSH 1116

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVAREL 91
                 +G ++   +++V+A   +    E 
Sbjct: 1117 PREIPQGLMTKIKHAVVNANLLAFFCMEF 1145



 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 5/179 (2%)

Query: 10   EKRI-GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            E  +    F++   +  A+T  S       +Y+R EF GD +L   +S  LF    +  E
Sbjct: 885  ETILRDLEFSSIRHIITAITAPSAQS--LTNYQRYEFFGDSVLKFTVSCQLFFQHPNWHE 942

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            G LS   + +V     ++ A +  L +FI  ++ +  +         I     +  ++  
Sbjct: 943  GYLSEGRDEIVQNSRLARAALDAGLDAFIMNKMFTPRKWSAPLISEKISLTPKQRTMSTK 1002

Query: 127  YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
             L   +E             A  +   R   +  L+        +  +         DH
Sbjct: 1003 VLADVVEALIGASYIDGGFAAAHACIHRFLPEVNLENIDRTTAPMPKDGVTNHTLNDDH 1061


>gi|326533632|dbj|BAK05347.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 381

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 87/240 (36%), Gaps = 25/240 (10%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + +E+ + Y F +RSLL++ALTH S S       SY+RLEF+GD  LGL  S  L+    
Sbjct: 44  ARVERLLQYRFRDRSLLDEALTHQSFSGGAGGAASYQRLEFVGDAALGLAFSNFLYLTNP 103

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +   G LS    + +S E  ++VA   DL   +R +      +           +E  + 
Sbjct: 104 TVGPGALSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIESVKQELEDDLG 163

Query: 125 ALYLDGGIEVAGT------------FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
                G +  A                              R   +  +      +  V+
Sbjct: 164 ITPYGGSVFKAPKVLADIVEAIAAAVYVDCKFNIEELWKVTRFLFEPIVTAETIDEQPVS 223

Query: 173 PEYKVTFRSGPDHD-------PRFTVVVEISGLAPAQGMDCSKR--AAEQVAAAEVLKRE 223
             +++  + G D             V V + G+    G   S++   A+  A  + L + 
Sbjct: 224 TLHELCQKHGKDIKFKSWQKGGTTVVNVFVGGVLV--GTGSSEQMGIAKLNATRDALSKL 281



 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS---GLAPAQGMDCSK-RA 210
           R+ K +L +  + K    P +K+    GP HD  F   V++    G+    G   S+ + 
Sbjct: 306 RECKKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKD 365

Query: 211 AEQVAAAEVLKRE 223
           AE   A ++L+  
Sbjct: 366 AENSGAQKMLEHL 378


>gi|326497771|dbj|BAK05975.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 379

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 87/240 (36%), Gaps = 25/240 (10%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + +E+ + Y F +RSLL++ALTH S S       SY+RLEF+GD  LGL  S  L+    
Sbjct: 42  ARVERLLQYRFRDRSLLDEALTHQSFSGGAGGAASYQRLEFVGDAALGLAFSNFLYLTNP 101

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +   G LS    + +S E  ++VA   DL   +R +      +           +E  + 
Sbjct: 102 TVGPGALSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIESVKQELEDDLG 161

Query: 125 ALYLDGGIEVAGT------------FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
                G +  A                              R   +  +      +  V+
Sbjct: 162 ITPYGGSVFKAPKVLADIVEAIAAAVYVDCKFNIEELWKVTRFLFEPIVTAETIDEQPVS 221

Query: 173 PEYKVTFRSGPDHD-------PRFTVVVEISGLAPAQGMDCSKR--AAEQVAAAEVLKRE 223
             +++  + G D             V V + G+    G   S++   A+  A  + L + 
Sbjct: 222 TLHELCQKHGKDIKFKSWQKGGTTVVNVFVGGVLV--GTGSSEQMGIAKLNATRDALSKL 279



 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS---GLAPAQGMDCSK-RA 210
           R+ K +L +  + K    P +K+    GP HD  F   V++    G+    G   S+ + 
Sbjct: 304 RECKKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKD 363

Query: 211 AEQVAAAEVLKRE 223
           AE   A ++L+  
Sbjct: 364 AENSGAQKMLEHL 376


>gi|52550203|gb|AAU84052.1| ribonuclease III [uncultured archaeon GZfos36D8]
          Length = 262

 Score = 73.8 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 23/243 (9%)

Query: 2   SALRYS--TLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57
             +++    LE  IG+ F N +LLE+A+T  S S+ +    +Y+ LEFLGDR+L L+++ 
Sbjct: 10  ENIKFELMELEASIGHQFKNIALLEEAITTGSYSNEHPGSSNYQTLEFLGDRVLSLILAE 69

Query: 58  LLFNHFDSAKEG--ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
            LF    SA     +++     L +    ++    + L ++IR +          +  + 
Sbjct: 70  ELFKLSKSASLDEGKMTFLKAELENNLRLAEYGENIGLRNYIRANEKREDIRPKVIADVF 129

Query: 116 ADVVESLIA-ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
             +  ++           EV    +     +R  K     +       ++ +        
Sbjct: 130 EAICGAIYLDTEESIRIKEVKKFLLKFEILERIKKEMSSGKGFLPIRNQFENKFREKHRC 189

Query: 175 YKVTFRS-----GPDHDPRFTVV-VEISGLAPAQ-----G-----MDCSKRAAEQVAAAE 218
                       G +H  R+ +    I  +   +     G        SK+ AE  A  +
Sbjct: 190 NPEIKFEQKSTLGEEHPTRWRIEKCSIKDIQTGEYVELKGVKSDKWFSSKKDAETDAFEQ 249

Query: 219 VLK 221
             K
Sbjct: 250 AYK 252


>gi|299747526|ref|XP_001837094.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130]
 gi|298407559|gb|EAU84711.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130]
          Length = 1499

 Score = 73.4 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 46/91 (50%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
               +E  IG+ F    LL + LTH+S+  S   +YERLEF+GD IL  ++   +F+   +
Sbjct: 1210 IEAVEGIIGHRFQQPHLLAQILTHTSVHGSKVLTYERLEFIGDAILDFMVIRHIFDRERT 1269

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASF 96
               G L++   ++V+  T + V     +   
Sbjct: 1270 LSPGGLTMLKGAMVANSTLATVCILSGIYKH 1300



 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 7/107 (6%)

Query: 11   KRIGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            K +   F     +  LL  A T  S    +  +YERLE LGD  L  L S ++F    + 
Sbjct: 958  KELNMQFFDNAIDEELLYMATTTVSAEMEH--NYERLELLGDAFLKYLASVVVFVMNPTQ 1015

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
             EG L V    L+S +     A ++ L ++   S            S
Sbjct: 1016 NEGSLHVARQRLISNKALLACATQVGLPAY-ICSKPFLLRGWRPWPS 1061


>gi|302685924|ref|XP_003032642.1| hypothetical protein SCHCODRAFT_53921 [Schizophyllum commune H4-8]
 gi|300106336|gb|EFI97739.1| hypothetical protein SCHCODRAFT_53921 [Schizophyllum commune H4-8]
          Length = 368

 Score = 73.4 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 78/217 (35%), Gaps = 16/217 (7%)

Query: 20  RSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
             L+++A TH+S     +E         +  +LE +G+ ++GL  S  L   +       
Sbjct: 75  PELVQQACTHASFVALQKEVNPNAPAPATNAQLEQVGNALMGLFASEYLAAKYPYLPTKV 134

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL------IA 124
           L     + V   TC+ VA+E+     +R +  + ++       +  D + S+      + 
Sbjct: 135 LKAAVTAHVGPLTCANVAQEMGATQLLRWNRTISRNPSHPQVMLHTDALASIPRALTALI 194

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP- 183
                              +Q  L+S    R+ K  L +         P  ++   +G  
Sbjct: 195 YQKRSLPAARQFVHSFFLSRQVDLRSMLKFRNPKWALLQLVRKFDRERPVSRLLKETGRF 254

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            + P + V V        +G   S + AE  AA + L
Sbjct: 255 SNSPVYLVGVFSGEEQIGEGFGSSLKMAEYRAAEDAL 291


>gi|296081735|emb|CBI20740.3| unnamed protein product [Vitis vinifera]
          Length = 1688

 Score = 73.4 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 1/114 (0%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLF 60
             A     LE +IGY F+ + LL +A+TH++         Y+RLEFLGD +L +LI+  L+
Sbjct: 1262 KANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLITWHLY 1321

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
                    GEL+   ++ V+ E+ +QVA   +L   ++  S L           
Sbjct: 1322 QSHRDIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKY 1375



 Score = 41.5 bits (95), Expect = 0.084,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 21   SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            SL+ +A+T  ++  S   S ERLE LGD +L   +S  LF  +    EG+LS R + +V 
Sbjct: 1072 SLILEAIT--TLRCSESFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVC 1129

Query: 81   AETCSQVARELDLASFIR 98
              T  ++  +  L  +IR
Sbjct: 1130 NSTLHKLGTDRSLQGYIR 1147


>gi|240277023|gb|EER40533.1| RNase3 domain-containing protein [Ajellomyces capsulatus H143]
 gi|325094961|gb|EGC48271.1| RNase3 domain-containing protein [Ajellomyces capsulatus H88]
          Length = 380

 Score = 73.4 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 81/218 (37%), Gaps = 22/218 (10%)

Query: 23  LEKA-LTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           L+ A  TH  + +       +++YER+E LGD  + ++ + L+++ F     G LS    
Sbjct: 139 LQTAMFTHEGVHNPNTASLPEKNYERMELLGDAYIEIIATRLVWDTFPRLPAGRLSQIRE 198

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            LV  ET ++      L   ++V  ++R       T I+ D+ E+ +AA+ L        
Sbjct: 199 LLVKNETLAEYTSLYGLDQKLQVPPNIRDQ-VKTWTKIKGDLFEAYVAAVILSNRDNGVQ 257

Query: 137 TFVDKYWKQRALKSGK--------FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
              D   +    K  +          ++   +L      K     E +    SG      
Sbjct: 258 LAEDWLTQLWIPKLEQIEKDKPVLRYKEDLAKLVMDKGIKLSYLDEKQSICHSG--GLQT 315

Query: 189 FTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F V V +            G   SK  A   AA + L+
Sbjct: 316 FFVGVYLTGWGHKNECLGSGTGFSKVIAGNEAARKALE 353


>gi|225429722|ref|XP_002280293.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1661

 Score = 73.4 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 1/114 (0%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLF 60
             A     LE +IGY F+ + LL +A+TH++         Y+RLEFLGD +L +LI+  L+
Sbjct: 1235 KANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLITWHLY 1294

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
                    GEL+   ++ V+ E+ +QVA   +L   ++  S L           
Sbjct: 1295 QSHRDIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKY 1348



 Score = 41.5 bits (95), Expect = 0.084,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 21   SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            SL+ +A+T  ++  S   S ERLE LGD +L   +S  LF  +    EG+LS R + +V 
Sbjct: 1045 SLILEAIT--TLRCSESFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVC 1102

Query: 81   AETCSQVARELDLASFIR 98
              T  ++  +  L  +IR
Sbjct: 1103 NSTLHKLGTDRSLQGYIR 1120


>gi|322510548|gb|ADX05862.1| putative ribonuclease III [Organic Lake phycodnavirus 1]
          Length = 293

 Score = 73.0 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 91/276 (32%), Gaps = 55/276 (19%)

Query: 3   ALRYSTLEKRIG-----YAFANRSLLEKALTHSSISHSYQ---------------ESYER 42
            ++ + +E+ +      +   +  + E+A  +SS                      S ER
Sbjct: 14  KIKKTDIEQILRNYHIYHKVKHMEIWERAFVNSSYIKQPNIMYSSCPFNCLELKQSSNER 73

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
           LEF+GD IL L+    L+  F  A EG ++ +  +LV  +   ++A +L L  ++ +S  
Sbjct: 74  LEFIGDGILELITKYYLYKRFPDADEGFMTEKKINLVKNDHIGKLAYKLGLHKYLLLSKQ 133

Query: 103 LRKDVCSFMTSIQADVVESLIAALYLD-----------GGIEVAGTFVDKYWKQRALKSG 151
             +            + ES + AL+LD           G          +    + +   
Sbjct: 134 SEEKKNRCNYKKLGCLFESFLGALFLDTNETQDELFLMGNGIQYCQLFIENVFNKLVDWT 193

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS--------------- 196
           +   +       +                   D + R+T+ V +                
Sbjct: 194 EILENDDNYKNIFQVKIQKEFKCTPEYKIIQQDEELRYTMGVYLYLNSKDTSSTKFELIK 253

Query: 197 ---------GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                     +    G+   K+ AEQ+A  + LK+ 
Sbjct: 254 NLEHIKPNTNVHFGTGVHKIKKKAEQLACLDALKKI 289


>gi|196229195|ref|ZP_03128060.1| Ribonuclease III [Chthoniobacter flavus Ellin428]
 gi|196226427|gb|EDY20932.1| Ribonuclease III [Chthoniobacter flavus Ellin428]
          Length = 152

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 3/131 (2%)

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRR 155
            +             S  +D  E+LI A+YLD         V    +     L+      
Sbjct: 1   MMGRGEESSGGRERASTLSDAFEALIGAMYLDSDFVTVRRIVLTESRDLLEDLEVDPPDT 60

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           + K  LQE   A   ++P Y +  +SGP+H  RF   +   G     G   SK+ AE  A
Sbjct: 61  NPKGRLQELLQAISPISPTYPIVDQSGPEHQKRFVAKIVWDGKELGSGDGRSKKEAETAA 120

Query: 216 AAEVLKREGIW 226
           A + L +E +W
Sbjct: 121 ARDALSKE-LW 130


>gi|261749614|ref|YP_003257300.1| ribonuclease III [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
 gi|261497707|gb|ACX84157.1| ribonuclease III [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
          Length = 251

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 87/226 (38%), Gaps = 8/226 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALT------HSSISHSYQESYERLEFLGDRILGLLI 55
           +++  S L+K +G+   N  LL+            ++  +Y   ++RLEFLGD +L  +I
Sbjct: 14  NSILVSRLKKILGFCPKNLKLLKDVFIYSFSTKRKTLDKNYFLDFQRLEFLGDAVLNSII 73

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L       KEGEL+   + +V  +  ++++++L LA     ++           +++
Sbjct: 74  SHFLCEKLPEKKEGELTQVRSKIVCRKNLNEISKKLTLAEVFFQNNQPIISENILGNTLE 133

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           A +    +   Y      V    +  +     L++               +        +
Sbjct: 134 ALIGFIYLEIGYQGCKNFVYKKILHYHVNITQLQNEISSYKVWVIEWSQKNKFIINFNTF 193

Query: 176 KVTFRSGPD-HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219
           + T     + H   +     IS      +G   SK+ +E++AA   
Sbjct: 194 RETKEEIENKHVITYFSEFTISRCGIKTEGRGPSKKKSEEMAAKAA 239


>gi|167046016|gb|ABZ10539.1| dicer-like protein A [Trichoplax adhaerens]
          Length = 351

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 1/109 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +    E+ +GY F N   L  A THSS       +YE+LEF+GD IL  L+   LF    
Sbjct: 181 KLHKFEENLGYKFINIDYLILAFTHSSSEFGDSFNYEKLEFVGDSILNYLVIKYLF-LAT 239

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
                     +   +S E    ++   +       S  +++ +  F   
Sbjct: 240 DQDITRSKFFYGIAISNEVYGLLSYAYNFHHLFYQSPFVKEMILGFEKK 288


>gi|167046018|gb|ABZ10540.1| dicer-like protein A [Placozoa sp. DMJ-2008]
          Length = 351

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 1/109 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +    E+ +GY F N   L  A THSS       +YE+LEF+GD IL  L+   LF    
Sbjct: 181 KLHKFEENLGYKFINIDYLILAFTHSSSEFGDSFNYEKLEFVGDSILNYLVIKYLF-LAT 239

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
                     +   +S E    ++   +       S  +++ +  F   
Sbjct: 240 DQDITRSKFFYGIAISNEVYGLLSYAYNFHHLFYQSPFVKEMILGFEKK 288


>gi|293410983|ref|ZP_06654559.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B354]
 gi|291471451|gb|EFF13935.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B354]
          Length = 189

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 85/173 (49%), Gaps = 3/173 (1%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLEFLGD IL  +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+ 
Sbjct: 1   ERLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLG 60

Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAK 158
               K       SI AD VE+LI  ++LD  I+            +   +  G  ++D K
Sbjct: 61  PGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPK 120

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
           T LQE+   +    P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 TRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 173


>gi|156845983|ref|XP_001645880.1| hypothetical protein Kpol_1045p6 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116550|gb|EDO18022.1| hypothetical protein Kpol_1045p6 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 478

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 72/231 (31%), Gaps = 24/231 (10%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              + S+  K   H S                  ERLEFLGD +L  +++ +++N F + 
Sbjct: 192 EIKDPSIRAKVFIHKSTIKDKLYLKESEMINAHNERLEFLGDSVLNTIMTMIIYNKFPTF 251

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    +LVS E         +    ++ + DL  D   F    Q    +   A +
Sbjct: 252 TEGQLSKLRMNLVSNERIKSWTYLYNFDKKLKTNFDLGNDKSHFQNGKQKLYADVFEAYI 311

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD-- 184
                 +              L         + ++         +  + ++    G    
Sbjct: 312 GGLIEDDPKHNMPKVRKWLTKLSKPIINEVMQKDVSLETTENIDLNAKRQLYSIIGYAAL 371

Query: 185 --H----------DPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             H          DP   V   I  G     G   + + A   AA  VL+ 
Sbjct: 372 NLHYEPVKRPTRDDPISIVECRIDDGTVLGVGKGRNVKIAGLCAAQNVLRN 422


>gi|332644323|gb|AEE77844.1| protein dicer-like 3 [Arabidopsis thaliana]
          Length = 1570

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 2/99 (2%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
                   LE++I + F+ + LL++A+THSS+  SY  SYERLEFLGD +L  LI+  LFN
Sbjct: 1184 KEDELIELERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFN 1241

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
             ++    GE++   ++ V+ E  +QVA + +L + ++  
Sbjct: 1242 TYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRC 1280



 Score = 36.8 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 7    STLEKRIGYAFANRSL----LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            S L + I  +  N S+    + +A+T  +++     S ERLE LGD +L  + S  LF  
Sbjct: 976  SQLREEIDCSIDNFSISSTSILEAVT--TLTCPESFSMERLELLGDSVLKYVASCHLFLK 1033

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
            +    EG+LS +  S++S     ++     L  +IR 
Sbjct: 1034 YPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRN 1070


>gi|238479965|ref|NP_001154663.1| ribonuclease III family protein [Arabidopsis thaliana]
 gi|322518661|sp|Q9LXW7|DCL3_ARATH RecName: Full=Endoribonuclease Dicer homolog 3; AltName:
            Full=Dicer-like protein 3; Short=AtDCL3
 gi|332644322|gb|AEE77843.1| protein dicer-like 3 [Arabidopsis thaliana]
          Length = 1580

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 2/99 (2%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
                   LE++I + F+ + LL++A+THSS+  SY  SYERLEFLGD +L  LI+  LFN
Sbjct: 1194 KEDELIELERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFN 1251

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
             ++    GE++   ++ V+ E  +QVA + +L + ++  
Sbjct: 1252 TYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRC 1290



 Score = 36.8 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 7    STLEKRIGYAFANRSL----LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            S L + I  +  N S+    + +A+T  +++     S ERLE LGD +L  + S  LF  
Sbjct: 986  SQLREEIDCSIDNFSISSTSILEAVT--TLTCPESFSMERLELLGDSVLKYVASCHLFLK 1043

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
            +    EG+LS +  S++S     ++     L  +IR 
Sbjct: 1044 YPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRN 1080


>gi|238479963|ref|NP_001154662.1| ribonuclease III family protein [Arabidopsis thaliana]
          Length = 1577

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 2/99 (2%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
                   LE++I + F+ + LL++A+THSS+  SY  SYERLEFLGD +L  LI+  LFN
Sbjct: 1191 KEDELIELERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFN 1248

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
             ++    GE++   ++ V+ E  +QVA + +L + ++  
Sbjct: 1249 TYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRC 1287



 Score = 36.8 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 7    STLEKRIGYAFANRSL----LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            S L + I  +  N S+    + +A+T  +++     S ERLE LGD +L  + S  LF  
Sbjct: 983  SQLREEIDCSIDNFSISSTSILEAVT--TLTCPESFSMERLELLGDSVLKYVASCHLFLK 1040

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
            +    EG+LS +  S++S     ++     L  +IR 
Sbjct: 1041 YPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRN 1077


>gi|15229816|ref|NP_189978.1| ribonuclease III family protein [Arabidopsis thaliana]
 gi|7594553|emb|CAB88120.1| putative protein [Arabidopsis thaliana]
 gi|94450858|gb|ABF19799.1| dicer-like 3 [Arabidopsis thaliana]
 gi|332644321|gb|AEE77842.1| protein dicer-like 3 [Arabidopsis thaliana]
          Length = 1531

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 2/99 (2%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
                   LE++I + F+ + LL++A+THSS+  SY  SYERLEFLGD +L  LI+  LFN
Sbjct: 1145 KEDELIELERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFN 1202

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
             ++    GE++   ++ V+ E  +QVA + +L + ++  
Sbjct: 1203 TYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRC 1241



 Score = 36.8 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 7    STLEKRIGYAFANRSL----LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            S L + I  +  N S+    + +A+T  +++     S ERLE LGD +L  + S  LF  
Sbjct: 937  SQLREEIDCSIDNFSISSTSILEAVT--TLTCPESFSMERLELLGDSVLKYVASCHLFLK 994

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
            +    EG+LS +  S++S     ++     L  +IR 
Sbjct: 995  YPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRN 1031


>gi|75907020|ref|YP_321316.1| ribonuclease III [Anabaena variabilis ATCC 29413]
 gi|75700745|gb|ABA20421.1| RNAse III [Anabaena variabilis ATCC 29413]
          Length = 242

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 8/211 (3%)

Query: 5   RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  +L +++G          LL+ ALTH ++S     +YE+LEF+GD ++ L  + +L+ 
Sbjct: 11  QLESLVRKLGLPTTAPIKWELLDLALTHPTVSE--SANYEQLEFVGDAVVRLAAAVMLWE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +     G+ +   + LVS    +Q+ARE  L   + V+     D     + +       
Sbjct: 69  TYPDCPVGDFAAIRSVLVSDRILAQLAREYGLELHLLVAGSATSDKIGQESRLADAFEAV 128

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L A       +E+   ++D +++Q    ++    R + K  LQEW  A+F V PEY+V  
Sbjct: 129 LGALYLSTSNLELIRPWLDHHFRQLAAEIRLDPARLNYKAALQEWTQAQFKVLPEYRVVE 188

Query: 180 RSGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209
            +  +    RF   V + G    +G   S +
Sbjct: 189 INQANRTQERFAAEVWLHGNKLGEGKGRSIK 219


>gi|325685925|gb|EGD27990.1| ribonuclease III [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 154

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 52/152 (34%), Gaps = 1/152 (0%)

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              +++V  E  S+VA +      I +     K       ++  DV E+   AL+LD GI
Sbjct: 1   RLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALLEDVFEAFNGALFLDQGI 60

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           E    F+ +                     +    + G                P F V 
Sbjct: 61  EAVEKFLRQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVLNESQQP-PHFEVE 119

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           V + G   A G   +K+ AEQ AA+  L+   
Sbjct: 120 VLVDGKKLASGEGRNKKKAEQDAASHALEHLN 151


>gi|299754132|ref|XP_002911949.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130]
 gi|298410618|gb|EFI28455.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130]
          Length = 1457

 Score = 73.0 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + TL++R+GY F + S+L +A+TH S +     SY+RLEFLGD IL L++   L+  F  
Sbjct: 1121 FDTLQERLGYTFHSNSILVEAVTHPSFATD-GPSYQRLEFLGDAILDLVVVHYLYEKFPE 1179

Query: 66   AKEGELSVRFNSLVSAET 83
            A   +LS+    ++ A T
Sbjct: 1180 ANSHQLSLLRAKVICAPT 1197



 Score = 42.6 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 13   IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            +   F    +L ++LT    +     S +RLE LGD +L L  +  LFN + +  EG+L+
Sbjct: 949  LRLPFIEDKILIESLTIP--AALLAFSNQRLETLGDAVLQLCTTVHLFNQYPNRHEGQLT 1006

Query: 73   VRFNSLVSAETCSQVARELDLASFIR 98
                + VS +   Q A E+ L  +I 
Sbjct: 1007 TLRRATVSNKFLLQRALEMGLEEYIT 1032


>gi|149234499|ref|XP_001523129.1| hypothetical protein LELG_05675 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146453238|gb|EDK47494.1| hypothetical protein LELG_05675 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 729

 Score = 72.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 16/221 (7%)

Query: 17  FANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             + +L EK   H S  ++           +  ERLEF GD IL  LI+ +++N F +  
Sbjct: 356 IRDSALYEKVFVHKSTVNNRTYLGSDALIHKHNERLEFYGDSILNNLITIIIYNKFPNNT 415

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EGELS    ++++     ++A +      +R   D           I ADV E+ I AL 
Sbjct: 416 EGELSKIRAAMINNRVLKEIAVDYGFDKKLRTRIDQDVLNL-GEQKIYADVFEAYIGALG 474

Query: 128 LDGGI---EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           L+      EV       Y K+ A    ++ +D      +        T +   T++    
Sbjct: 475 LERQFDLKEVKDWLEILYAKRIADLQREYIKDPLDRDAKAELYSMIGTGDLHPTYKVHSA 534

Query: 185 HDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            D     + V   ++     +G+  +++ A   AA   LK 
Sbjct: 535 GDGIHTDYVVDCFMNREFLGRGIAVNQKEASLRAAMNALKN 575


>gi|254411973|ref|ZP_05025748.1| RNase3 domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180939|gb|EDX75928.1| RNase3 domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 317

 Score = 72.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 4/140 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFN 61
              +LE +IG  F +   L  AL H S +      +++ ERL+FLGD I+ L+I+  L++
Sbjct: 4   NSESLENQIGIQFKHSDTLRLALMHRSYAEQIGESEQNNERLKFLGDAIVNLVITDYLYH 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +    +        + LV  +  +++  +L L         L ++             E+
Sbjct: 64  NCPYLEVSNFKGLRDKLVEGQRLTKLWYQLGLGE-GYPFLGLTQERHRLRLQNHNPFEEA 122

Query: 122 LIAALYLDGGIEVAGTFVDK 141
           LIA +             + 
Sbjct: 123 LIALVGAIHQDRGFSQARNW 142


>gi|168061351|ref|XP_001782653.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665886|gb|EDQ52556.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 514

 Score = 72.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 93/263 (35%), Gaps = 44/263 (16%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSI------------------------------ 32
            L+   L +++G +  +R LL + L H S                               
Sbjct: 245 NLQLQILTEKLGCSIHSRELLLRILVHKSYYLSKMPQSVKEKKLRKPLMSWQRSGTVEDN 304

Query: 33  ----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88
               + ++ E+  +L  +GD +L L+ ST L   +     G ++ R + LV     ++  
Sbjct: 305 LMTFADAHAEARLKLALIGDTVLNLVASTHLIRQYPLLSTGSITERRSQLVCNSNLARAW 364

Query: 89  REL--------DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
             L              R        +        AD +E+ I  LY++ G+E    FV+
Sbjct: 365 CTLLDLRELVLCDPLLSRSKKASATALLENQMKACADTLEAYIGGLYVEKGLESTLQFVE 424

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD-HDPRFTVVVEISGLA 199
                  L   K  R+  T L +         P+YK+      +  +    + V + G  
Sbjct: 425 TRLL-PLLLLAKPTRNPVTILHDRCAMVLQEKPDYKLIGVDNQNTPNESCRIRVYVKGFR 483

Query: 200 PAQGMDCSKRAAEQVAAAEVLKR 222
            + G+  S+R A Q AA + L +
Sbjct: 484 LSTGIGKSQRLARQDAAEKALLK 506


>gi|242215871|ref|XP_002473747.1| predicted protein [Postia placenta Mad-698-R]
 gi|220727142|gb|EED81071.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1725

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 44/75 (58%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            ++ L++ +GY F +  LL +A+TH S +     SY+RLEFLGD ++ L +   L+N F  
Sbjct: 1116 FTLLQESLGYRFRSGRLLLEAMTHPSFNSFETSSYQRLEFLGDAVVDLAVMRYLYNKFPQ 1175

Query: 66   AKEGELSVRFNSLVS 80
            A  G+LS   +  V 
Sbjct: 1176 ATSGQLSWARSRAVC 1190



 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 21   SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
             LL +ALT  S +  +  + +RLE LGD +L L     LFN F    EG+L     + VS
Sbjct: 949  DLLIQALTIPSANAGF--NNQRLETLGDSVLKLTTVVHLFNRFPFRHEGQLDTLRRNSVS 1006

Query: 81   AETCSQVARELDLASFIRVSSDLR 104
              T    A+E+ L  ++   S   
Sbjct: 1007 NRTLLARAKEVGLEEYLSCESQSM 1030


>gi|499371|gb|AAA21843.1| RNase III [Escherichia coli]
          Length = 45

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 3/48 (6%)

Query: 1  MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGD 48
          M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEFLGD
Sbjct: 1  MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEFLGD 45


>gi|255720468|ref|XP_002556514.1| KLTH0H15180p [Lachancea thermotolerans]
 gi|238942480|emb|CAR30652.1| KLTH0H15180p [Lachancea thermotolerans]
          Length = 494

 Score = 72.7 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 76/231 (32%), Gaps = 25/231 (10%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              N ++  +   H S+ +           +   ERLEFLGD IL   I+ +L+N F   
Sbjct: 191 EIKNSAIKARVFIHKSMINDKLYLSEHDMIKAHNERLEFLGDSILNTTITMILYNKFPHL 250

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC---SFMTSIQADVVESLI 123
            EG+LS     L+S E   + +        +R + D   +          + ADV E+ I
Sbjct: 251 SEGQLSKLRMKLISNERLKKWSFLYKFNEKLRTNLDKTCENNDFKHGKQKLYADVFEAYI 310

Query: 124 AALYLDGGIEVAGTFVDK------------YWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
             L  D                        + K   L   +   +AK  L          
Sbjct: 311 GGLIEDDPKHNLPKVRKWLSKLASPVIEEEFKKDDDLDVNEVDINAKKTLYSLIGYAALN 370

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                +   S  D +      ++  G     G   + + A   AA +VL+ 
Sbjct: 371 LHYKPIQKPSSEDSNALVECRIK-DGTVLGVGKGRNIKIAGMRAAQQVLQN 420


>gi|73953910|ref|XP_868231.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
            isoform 3 [Canis familiaris]
          Length = 1282

 Score = 72.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 5/165 (3%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1103 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1162

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +   +   ++ V    T   AD++ES 
Sbjct: 1163 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALR-TKTLADLLESF 1221

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWA 165
            IAALY+D  +E   TF++  +  R       +   D K++LQ+  
Sbjct: 1222 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1266



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 954  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1013

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              +        S +    A+  E+LI A+YL+G +E
Sbjct: 1014 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLE 1049



 Score = 43.8 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 870 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 900


>gi|58040241|ref|YP_192205.1| ribonuclease III [Gluconobacter oxydans 621H]
 gi|58002655|gb|AAW61549.1| Ribonuclease III [Gluconobacter oxydans 621H]
          Length = 174

 Score = 72.3 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 1/170 (0%)

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           ++  L   +   +EG L  R   LVS    +++A ++ L++ +++S          ++SI
Sbjct: 1   MAEWLLERYPDEQEGALGPRHAHLVSRTVLAEIADQVGLSASLQISPHEEDAGIRRLSSI 60

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           +AD +E+L+ ALYLDGG+E A   V +YW+ R   + +  ++ KT LQE+  ++    P 
Sbjct: 61  RADAMEALLGALYLDGGLEPARRVVHQYWQSRIESADRPHKEPKTLLQEYMLSQGLPLPH 120

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           Y++    GP H P F V V   G     G   SKR AE  AA  +LK  G
Sbjct: 121 YELLSSDGPSHAPVFRVSVTTMGHT-GTGEAGSKRLAESAAATALLKHLG 169


>gi|159027736|emb|CAO89606.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 234

 Score = 72.3 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 96/207 (46%), Gaps = 8/207 (3%)

Query: 5   RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  TL +++G +        LL+ ALTH S+S    ++YE+LEF+GD ++ L+ + +L  
Sbjct: 11  QLKTLVEKLGLSADVPVRWDLLDLALTHPSVSRD--KNYEQLEFVGDSVVRLVAAEVLLE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  A  GE +   + +VS  T ++ A       ++ VSS    D    ++ +       
Sbjct: 69  TYPEALVGEFAALRSMMVSDRTLAEFADRYGFERYLLVSSSTSIDRAGRISRLADAFEAV 128

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L A       + +  +++D+  +++   ++    R++ K  LQEW  AK+   P+Y V  
Sbjct: 129 LGALYLSTQTMILVRSWLDEPLREKAAEIRRDPARQNYKDALQEWTQAKYKKLPQYLVKE 188

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDC 206
            +G D +  F   V ++      G   
Sbjct: 189 INGLDQER-FCAEVWLNEQKLGVGTGR 214


>gi|260945020|ref|XP_002616808.1| hypothetical protein CLUG_04049 [Clavispora lusitaniae ATCC 42720]
 gi|238850457|gb|EEQ39921.1| hypothetical protein CLUG_04049 [Clavispora lusitaniae ATCC 42720]
          Length = 406

 Score = 72.3 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 78/223 (34%), Gaps = 17/223 (7%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              N  L  +   H S S +              ERLEFLGD +L  L++ +L+  F  A
Sbjct: 58  KIRNAHLRARVFQHKSTSANKTYLAEQEIVSSHNERLEFLGDSVLNTLVTFILYEKFPFA 117

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG LS   +SLVS +T ++ + +      +R   D           I AD+ E+ + AL
Sbjct: 118 NEGLLSQIRSSLVSNKTLAEFSTQYGFDQSLRCKVDESALRN-GKQKIFADIFEAYVGAL 176

Query: 127 YLDGGIEVAGTFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            ++ G ++             K         +     +  +        T      ++  
Sbjct: 177 AMERGFDMNEVQQWLKALMASKLSEADLAIKKATPINKDAKTELYSLVGTASLHPIYKVV 236

Query: 183 PDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            + +     F V   +      +G+    R A   AA   LK 
Sbjct: 237 QNGNGVQSLFKVQCVMEDNVLGEGVAPGLRDAGLRAAMAALKN 279


>gi|154276932|ref|XP_001539311.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150414384|gb|EDN09749.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 380

 Score = 72.3 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 81/217 (37%), Gaps = 22/217 (10%)

Query: 23  LEKA-LTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           L+ A  TH  + +       +++YER+E LGD  + ++ + L+++ F     G LS    
Sbjct: 139 LQTAMFTHEGVHNPNTASLPEKNYERMELLGDAYIEIIATRLVWDTFPRLPAGRLSQIRE 198

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            LV  ET ++      L   ++V  ++R  +    T I+ D+ E+ +AA+ L        
Sbjct: 199 LLVKNETLAEYTSLYGLDQKLQVPPNIRDQI-KTWTKIKGDLFEAYVAAVILSNRDNGVQ 257

Query: 137 TFVDKYWKQRALKSGK--------FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
              D   +    K  +          ++   +L      K     E +    SG      
Sbjct: 258 LAEDWLTQLWIPKLEQIEKDKPVLRYKEDLAKLVMDKGIKLSYLDEKQSICHSG--GLQT 315

Query: 189 FTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVL 220
           F V V +            G   SK  A   AA + L
Sbjct: 316 FFVGVYLTGWGHKNECLGSGTGFSKVIAGNEAARKAL 352


>gi|189199432|ref|XP_001936053.1| conserved hypothetical protein [Pyrenophora tritici-repentis
            Pt-1C-BFP]
 gi|187983152|gb|EDU48640.1| conserved hypothetical protein [Pyrenophora tritici-repentis
            Pt-1C-BFP]
          Length = 1439

 Score = 72.3 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNH 62
            +    +EK +GY F N++LL +ALTH +        SYER EFLGD +L  ++S  LF H
Sbjct: 1121 MSLGLVEKLLGYKFTNKALLLEALTHVTFRGLNTNCSYERHEFLGDAVLDYIVSRRLFAH 1180

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVAR 89
                   ++     ++V+A   +    
Sbjct: 1181 KPELSHRKMHGIRTAMVNASFLAYSMF 1207



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 22   LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
            +L  ALT  S + +    Y+RLEFLGD IL  + S  L        EG L+ +   LVS 
Sbjct: 959  ILVTALT--SSALNEGNDYQRLEFLGDCILKFIASLHLMAANLQMPEGMLTGKKGKLVSN 1016

Query: 82   ETCSQVARELDLASFIRVSS 101
               ++      L  +I    
Sbjct: 1017 GYLARATLAAGLDQYIFHKR 1036


>gi|196000070|ref|XP_002109903.1| hypothetical protein TRIADDRAFT_20536 [Trichoplax adhaerens]
 gi|190588027|gb|EDV28069.1| hypothetical protein TRIADDRAFT_20536 [Trichoplax adhaerens]
          Length = 190

 Score = 71.9 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            +  E+ IG  F +  LL KA TH S   +H     Y+RLEFLGD IL  ++++ ++  F
Sbjct: 120 LTDFEESIGVEFKHIRLLAKAFTHPSAGLNHLTIGDYQRLEFLGDAILSYMLASHVYRQF 179

Query: 64  DSAKEGELSVR 74
              +EG LSVR
Sbjct: 180 PHYREGHLSVR 190


>gi|262340868|ref|YP_003283723.1| ribonuclease III [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272205|gb|ACY40113.1| ribonuclease III [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 250

 Score = 71.9 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 81/227 (35%), Gaps = 14/227 (6%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-------SYERLEFLGDRILGLL 54
            ++    L K +G+   N   L++   + S S   +        +++RLEFLGD +L  +
Sbjct: 15  DSILVRKLIKILGFCPKNTKFLKEVFIY-SFSTKRKNLNPNYSVNFQRLEFLGDAVLNSI 73

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           IS  L       KEGEL+   + +V     ++++R+L +A      S    ++       
Sbjct: 74  ISHFLCEKLPEKKEGELTQIRSKIVCRRNLNEISRKLTIADIFLEKSVTSDNILGNTLEA 133

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
               +   I        +            +            K  + EW+     +   
Sbjct: 134 LIGFIYLEIGYQGCKNFVHQKILHSHVNITK----LQNEIFSYKVWMIEWSQKNKFLINF 189

Query: 175 YKVTFRSGPDHD-PRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219
                +   D +   +   + I G     +G   SK+ +E++AA E 
Sbjct: 190 KTFREKEDKDKNLIIYLSELTILGFEIQTKGRGSSKKKSEEMAAKEA 236


>gi|126642554|ref|YP_001085538.1| ribonuclease III [Acinetobacter baumannii ATCC 17978]
          Length = 176

 Score = 71.9 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 3/174 (1%)

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           ++I+  L++ +    EG L+    +LV  E   ++A +L L+  + +S+   K       
Sbjct: 1   MIIANYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRE 60

Query: 113 SIQADVVESLIAALYLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
           SI AD VE++I A+YLD                     ++     +D K+ LQE+  A+ 
Sbjct: 61  SILADTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARK 120

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              P Y+V    G      F V   + GL+   G   S+R AEQ AAAE+LK  
Sbjct: 121 KPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILKLL 174


>gi|113474882|ref|YP_720943.1| RNAse III [Trichodesmium erythraeum IMS101]
 gi|110165930|gb|ABG50470.1| RNAse III [Trichodesmium erythraeum IMS101]
          Length = 250

 Score = 71.5 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 89/211 (42%), Gaps = 10/211 (4%)

Query: 5   RYSTLEKRIGYA----FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +  +L +++  +        +LL+ ALTHS++S ++  + E+LEF GD ++ L+ + LL 
Sbjct: 11  QLKSLVEKLSISQQALIK-WNLLDLALTHSTVSSTH--NNEKLEFFGDAVVRLVAAQLLL 67

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++ +   GE +   + LVS  + +Q+A +   + ++ VS     D       +      
Sbjct: 68  ENYPNCSVGEFTAIRSILVSDRSLAQIADKYGWSRYLLVSKSAAGDKVGRERRLADSFEA 127

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            L A       +E+   ++D ++++    ++        K  LQE     +   P Y+  
Sbjct: 128 VLGALYLSTNNLELIRPWLDSHFERLIAEIRKDPACHSYKAALQELTQGYYKTLPNYQAH 187

Query: 179 FRSGPDHDP-RFTVVVEISGLAPAQGMDCSK 208
             +    D  RF   V   G     G   S 
Sbjct: 188 EVNKIYGDRERFFAEVWFKGQKLGVGKGPSI 218


>gi|242039323|ref|XP_002467056.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor]
 gi|241920910|gb|EER94054.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor]
          Length = 1586

 Score = 71.5 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 1/98 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  LE ++ Y F+ + LL +A++H S+        Y+RLEFLGD +L LLI+  L+    
Sbjct: 1179 FEELEAKLKYNFSVKGLLLEAVSHPSLQELGVDYCYQRLEFLGDSVLDLLITQHLYATHT 1238

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
                GEL+   ++LVS E  +Q     ++ S ++  S 
Sbjct: 1239 DVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSG 1276



 Score = 43.0 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 65/213 (30%), Gaps = 23/213 (10%)

Query: 21   SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            SL+ +A+T  ++      S ERLE LGD +L  +I   LF  +    EG LS   +  V 
Sbjct: 983  SLILEAIT--TLRCCETFSLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVC 1040

Query: 81   AETCSQVARELDLASFIRVSSDLRKDVCS------FMTSIQADVVESLIAALYLDGGIEV 134
              T  +      L  +IR ++   +   +              +  + +         + 
Sbjct: 1041 NATLHKHGICRSLQGYIRDTAFDPRRWVAPGQISLRPFPCNCGIETAFVPFTGEYISDDP 1100

Query: 135  AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
            +        +       K   D    L    +   G+T    V    G D        V 
Sbjct: 1101 SFIVGKPCDRGHRWMCSKTVSDCVEALVGAYYVGGGITAAIWVMRWFGID--------VR 1152

Query: 195  ISGLAPAQGMDCSKRAAEQVAAAEV-LKREGIW 226
                   +    S       A+    L +  ++
Sbjct: 1153 CDMELVQKAKYNS------NASQLCYLSKLKVF 1179


>gi|164424566|ref|XP_963538.2| hypothetical protein NCU06766 [Neurospora crassa OR74A]
 gi|157070568|gb|EAA34302.2| predicted protein [Neurospora crassa OR74A]
          Length = 1421

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 77/229 (33%), Gaps = 19/229 (8%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLF 60
            + +   LEK + Y F  +SLL +A+TH S +   + +  YERLEFLGD IL +++   L 
Sbjct: 1037 SKQLEPLEKAMDYTFNKKSLLIEAMTHPSCAGLGTNESCYERLEFLGDAILDVIVVKRLM 1096

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  +    +     L S  T   +A        ++   +           +      
Sbjct: 1097 AETGPNELAH-NDMHEHLSSVVTADIMAFLAMEWVIMQTDINEIDPTNLDALGLLPSSQS 1155

Query: 121  SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA--KFGVTPEYKVT 178
             +  A  +    +       ++   +   +     +    L++          T  + + 
Sbjct: 1156 RITPASLVSNKEDWPFWRFMRHNSPQVGATQTATIERYLTLRDEIRDAIWKHNTLPWALL 1215

Query: 179  FRSGPDHDPRF---TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             R GP    +F    V   I  +    G           A  +VL + G
Sbjct: 1216 ARMGP---QKFYSDIVESLIGAVWVDSGS--------WKACEDVLTQMG 1253


>gi|161783812|sp|Q7SCC1|DCL2_NEUCR RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl-2; Includes: RecName:
            Full=ATP-dependent helicase dcl-2
 gi|18376024|emb|CAB91758.2| related to RNA helicase/RNAseIII CAF [Neurospora crassa]
          Length = 1540

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 77/229 (33%), Gaps = 19/229 (8%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLF 60
            + +   LEK + Y F  +SLL +A+TH S +   + +  YERLEFLGD IL +++   L 
Sbjct: 1156 SKQLEPLEKAMDYTFNKKSLLIEAMTHPSCAGLGTNESCYERLEFLGDAILDVIVVKRLM 1215

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  +    +     L S  T   +A        ++   +           +      
Sbjct: 1216 AETGPNELAH-NDMHEHLSSVVTADIMAFLAMEWVIMQTDINEIDPTNLDALGLLPSSQS 1274

Query: 121  SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA--KFGVTPEYKVT 178
             +  A  +    +       ++   +   +     +    L++          T  + + 
Sbjct: 1275 RITPASLVSNKEDWPFWRFMRHNSPQVGATQTATIERYLTLRDEIRDAIWKHNTLPWALL 1334

Query: 179  FRSGPDHDPRF---TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             R GP    +F    V   I  +    G           A  +VL + G
Sbjct: 1335 ARMGP---QKFYSDIVESLIGAVWVDSGS--------WKACEDVLTQMG 1372



 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS------TLLFNHFDSAKEGELS 72
            N  L+  AL   S       +YERLEF+GD IL           +   +   +  E  LS
Sbjct: 978  NLPLITTALI--SSGSRGPTNYERLEFIGDTILKFCACLTASALSAHHSIVPNHHERLLS 1035

Query: 73   VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
               + LV+     + +R+  L  +I  S+  +K    F+     ++
Sbjct: 1036 QWKDKLVNNVRLCRASRDFGLDEYIINSAASKKWRPKFVEDYMDEM 1081


>gi|70984786|ref|XP_747899.1| nucleolar RNAse III [Aspergillus fumigatus Af293]
 gi|66845527|gb|EAL85861.1| nucleolar RNAse III, putative [Aspergillus fumigatus Af293]
          Length = 373

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 79/230 (34%), Gaps = 17/230 (7%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           ++L    L   +     + SL     TH  +S   + +Y+RLE LGD  + L+ +  ++ 
Sbjct: 129 NSLSLPELPPIL-----DSSLELAVFTHPGLSKDSKLTYDRLEILGDAYIELIATRFIWG 183

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            ++    G++S     LV  ET S+ A    L +                T  + D+ ES
Sbjct: 184 RYEGFSSGQISQIRELLVKNETLSEFATLYGLDN-RASVPRDLLSQPRRWTKTKGDIFES 242

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +AA+ L    +          +    +       R A    +  A    G   + K   
Sbjct: 243 YVAAVILSRPSDGYHVAERWLTQLWLPRLTDAVIPRTALDAKETLAKRIMGKGVKLKYVD 302

Query: 180 RSGPD----HDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220
              P         F V V ++G          G   SK  A   AA + L
Sbjct: 303 ERSPAQSRGGMQTFYVGVYLTGWGWQNKHLGSGHGPSKAVAGDAAARQAL 352


>gi|325093360|gb|EGC46670.1| dicer-like protein [Ajellomyces capsulatus H88]
          Length = 1436

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 25/222 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN   +
Sbjct: 1097 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVYHLFNAPRT 1156

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
                ++ +   +L +A+  + +   +            R        S +    +     
Sbjct: 1157 LPHFDMHLMRTALANADFLAFLCIGMST---------ERVRGEIAECSKENTSTKLTTRK 1207

Query: 126  LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
            + L   +    ++     +Q+     +  +   +E  E +H                  H
Sbjct: 1208 VSLWQYMRHGTSWELTAAQQQTANQYQTLQADISEALEKSHTYPWTLLSRL--------H 1259

Query: 186  DPRFTVVVE--ISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              +F   +   + G                 A    L+R G+
Sbjct: 1260 AQKFFSDLIESVLGAIFIDSHGS------LEACTAFLERIGL 1295



 Score = 41.5 bits (95), Expect = 0.099,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F + SL+  A++ +S +     +Y+R+EFLGD IL    +  L        EG LS   +
Sbjct: 924  FTDLSLVITAIS-ASAARE-ATNYQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRAKD 981

Query: 77   SLVSAETCSQVARELDLASF 96
            ++VS +  S  A E  L  F
Sbjct: 982  TVVSNKRLSYAAIETGLDKF 1001


>gi|331236185|ref|XP_003330752.1| hypothetical protein PGTG_12289 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309309742|gb|EFP86333.1| hypothetical protein PGTG_12289 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1470

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 87/255 (34%), Gaps = 38/255 (14%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
              +E++I Y F  +  L +ALTH S +      YER E+LGD ++ + I    +  FD+A
Sbjct: 1115 EQIERKINYVFKEKLFLVQALTHRSANSFLTNCYEREEWLGDAVIDMWIVEHAYKRFDNA 1174

Query: 67   KEGELSVRFNSLVSAET-CSQVARELDLASFIRVSSDLRKDVC----------------- 108
               ELS+    +    +      ++L L  FI   SD     C                 
Sbjct: 1175 TADELSLARAKVACNGSLGFLAIKKLGLHEFIMHKSDNFHQACAEAIEAIEPFTKISEFF 1234

Query: 109  ---------SFMTSIQADVVESLIAALYLDGGIEVAGTFV-----DKYWKQRALKSGKFR 154
                          I  D +E+++ A+++D G+ +   +       +       +     
Sbjct: 1235 SNINNLFVVFDPPKILNDALEAIVGAVFVDSGLNLPTAYRVLDVIFEDVTPSLSRLAARD 1294

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMD-CSK 208
              +        +    +           P+ + +  V V +      G     G    S 
Sbjct: 1295 PVSTLLRLRDRYQCTELLRTTTTINEPNPEGEEKTPVSVRVCRIEFHGQQIGIGRHQSST 1354

Query: 209  RAAEQVAAAEVLKRE 223
              AEQ A+ E +K  
Sbjct: 1355 SVAEQRASLEAIKVL 1369


>gi|159126180|gb|EDP51296.1| nucleolar RNAse III, putative [Aspergillus fumigatus A1163]
          Length = 373

 Score = 71.1 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 79/230 (34%), Gaps = 17/230 (7%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           ++L    L   +     + SL     TH  +S   + +Y+RLE LGD  + L+ +  ++ 
Sbjct: 129 NSLSLPELPPIL-----DSSLELAVFTHPGLSKDSKLTYDRLEILGDAYIELIATRFIWG 183

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            ++    G++S     LV  ET S+ A    L +                T  + D+ ES
Sbjct: 184 RYEGFSSGQISQIRELLVKNETLSEFATLYGLDN-RASVPRDLLSQPRRWTKTKGDIFES 242

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +AA+ L    +          +    +       R A    +  A    G   + K   
Sbjct: 243 YVAAVILSRPSDGYHVAERWLTRLWLPRLTDAVIPRTALDAKETLAKRIMGKGVKLKYVD 302

Query: 180 RSGPD----HDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220
              P         F V V ++G          G   SK  A   AA + L
Sbjct: 303 ERSPAQSRGGMQTFYVGVYLTGWGWQNKHLGSGHGPSKAVAGDAAARQAL 352


>gi|240276002|gb|EER39515.1| dicer-like protein [Ajellomyces capsulatus H143]
          Length = 800

 Score = 70.7 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 25/222 (11%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +  +E  +GY F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN    
Sbjct: 461 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVYHLFNAPRI 520

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
               ++ +   +L +A+  + +   +            R        S +    +     
Sbjct: 521 LPHFDMHLMRTALANADFLAFLCIGMST---------ERVRGEIAECSKENTSTKLTTRK 571

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           + L   +    ++     +Q+     +  +   +E  E +H                  H
Sbjct: 572 VSLWQYMRHGTSWELTAAQQQTANQYQTLQADISEALEKSHTYPWTLLSRL--------H 623

Query: 186 DPRFTVVVE--ISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             +F   +   + G                 A    L+R G+
Sbjct: 624 AQKFFSDLIESVLGAIFIDSHGS------LDACTAFLERIGL 659



 Score = 41.5 bits (95), Expect = 0.099,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           F + SL+  A++ +S +     +Y+R+EFLGD IL    +  L        EG LS   +
Sbjct: 288 FTDLSLVITAIS-ASAARE-ATNYQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRAKD 345

Query: 77  SLVSAETCSQVARELDLASF 96
           ++VS +  S  A E  L  F
Sbjct: 346 TVVSNKRLSYAAIETGLDKF 365


>gi|302422698|ref|XP_003009179.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102]
 gi|261352325|gb|EEY14753.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102]
          Length = 1510

 Score = 70.7 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 73/256 (28%), Gaps = 49/256 (19%)

Query: 17   FANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
            F + +LL  A  H S         +Y+RLEFLGD +L ++    LF  F  A    L+  
Sbjct: 1230 FKSPALLRSAFKHPSYPRQFESVPNYQRLEFLGDALLDMVCVDFLFRKFPDADPQWLTEH 1289

Query: 75   FNSLVSAETCSQVARELDLASFIRVSSDLR------------------------------ 104
              ++VS      ++ EL     +   S +                               
Sbjct: 1290 KMAMVSNHFLGSLSVELGFYRRVLHFSGVMANQIKDYVDALTHARQEAEAAAQISGVISQ 1349

Query: 105  --KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK------QRALKSGKFRRD 156
                         +DVVE+ I A+++D G   +                 AL        
Sbjct: 1350 DYWLNVQHPPKFLSDVVEAYIGAIFVDSGYNYSQVQAFFEKHIRPFFADMALYDSFASSQ 1409

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDH---------DPRFTVVVEISGLAPAQGMDCS 207
              T L       FG      +     P           +        + G         S
Sbjct: 1410 PVTTLARMMQQDFGCQDWRLLVSELPPSCEDGGATAITETEVICGFMVHGRILLHAKSSS 1469

Query: 208  KRAAEQVAAAEVLKRE 223
             + A+  AA   +++ 
Sbjct: 1470 GQYAKVGAAKRAVEKL 1485



 Score = 43.4 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +A+T  S                   +YERLEFLGD  L +  +  LF     + 
Sbjct: 1080 PDLALEAMTKDSSNSDEQDQEKIDFQAGMGNNYERLEFLGDCFLKMATTIALFTRIPDSN 1139

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            E E  V    L+  +    VA + +L  +IR
Sbjct: 1140 EFEYHVERMLLICNQNLFNVALKKNLQEYIR 1170


>gi|119498655|ref|XP_001266085.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
 gi|119414249|gb|EAW24188.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
          Length = 373

 Score = 70.7 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 77/213 (36%), Gaps = 12/213 (5%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           + SL     TH  +S   + +Y+RLE LGD  + L+ +  +++ F+    G++S     L
Sbjct: 141 DSSLELAVFTHPGLSKDSKSTYDRLEILGDAYIELIATRFIWSRFEDISSGQISQIRELL 200

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           V  ET S+ A    L     V  DL        T  + D+ ES +AA+ L    +     
Sbjct: 201 VKNETLSEFATLYGLDGRASVPQDLLNQ-PRRWTKTKGDIFESYVAAIILSRPTDGYHVA 259

Query: 139 VDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP----DHDPRFTVV 192
                +    +       R A    +  A    G   + K      P         F V 
Sbjct: 260 ERWLTQLWLPRLTDTVIPRTALDAKETLAKRIMGKGVKLKYVDERSPVQSRGGMQTFYVG 319

Query: 193 VEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220
           V ++G          G   SK  A   AA + L
Sbjct: 320 VYLTGWGWQNKHLGSGHGPSKAVAGDAAARQAL 352


>gi|225563402|gb|EEH11681.1| dicer-like protein [Ajellomyces capsulatus G186AR]
          Length = 1436

 Score = 70.7 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 70/222 (31%), Gaps = 25/222 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN   +
Sbjct: 1097 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVYHLFNAPRT 1156

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
                ++ +   +L +A+  + +   +                 +  +        +    
Sbjct: 1157 FPHFDMHLMRTALANADFLAFLCIGMSTERVR--------GEIAECSKENTSTTLTTHKV 1208

Query: 126  LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
                         +    +Q A +    + D    L+      + +             H
Sbjct: 1209 SLWQYMRHGTSWELTAAQQQTANQYETLQADISEALEGSHTYPWTLLSRL---------H 1259

Query: 186  DPRFTVVVE--ISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              +F   +   + G                 A    L+R G+
Sbjct: 1260 AQKFFSDLIESVLGAIFIDSHGS------LDACTAFLERIGL 1295



 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F + SL+  A++ +S++     +Y+R+EFLGD IL    +  L        EG LS   +
Sbjct: 924  FTDLSLVITAIS-ASVARE-ATNYQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRAKD 981

Query: 77   SLVSAETCSQVARELDLASF 96
            ++VS +  S  A E  L  F
Sbjct: 982  TVVSNKRLSYAAIETGLDKF 1001


>gi|158334880|ref|YP_001516052.1| ribonuclease III [Acaryochloris marina MBIC11017]
 gi|158305121|gb|ABW26738.1| ribonuclease III [Acaryochloris marina MBIC11017]
          Length = 247

 Score = 70.7 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 82/214 (38%), Gaps = 13/214 (6%)

Query: 5   RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   L +R+G          LL+ ALTH S S   + +YE+LEF+GD ++ LL + LL  
Sbjct: 11  QLEKLIQRLGLPGNAPIRWDLLDLALTHPSAS--GRANYEQLEFVGDSVVRLLAAVLLQA 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--LRKDVCSFMTSIQADVV 119
                  GE S   + LVS    + +A    L  F+ +       +       +   + V
Sbjct: 69  ENAQGSVGEWSAIRSVLVSDRHLATLAANYGLDRFLLLGPSTLKDRRGQDSRLADAFEAV 128

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
              +     D  +           K   ++     ++ K  LQ+W  A +   PEY+V  
Sbjct: 129 LGALYLSTGDLSLIQPWLQDPLRNKAEQVRIDPAYQNYKAALQQWTQAVYQQLPEYRVQE 188

Query: 180 RSGPDHDP------RFTVVVEISGLAPAQGMDCS 207
            S P  DP      RFT  V +       G   S
Sbjct: 189 TSPPSQDPSDVMADRFTAEVWLQEELLGVGKGHS 222


>gi|322700444|gb|EFY92199.1| Dicer-like protein 2 [Metarhizium acridum CQMa 102]
          Length = 1441

 Score = 70.7 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE  +GY F  +SLL +A+TH S      + SYE LEF+GD IL  +I   ++    
Sbjct: 1154 LKPLEHLVGYQFKKKSLLIEAMTHQSCMFDYNRRSYEHLEFIGDAILDFIIVRKMYTAGP 1213

Query: 65   SAKEGELSVRFNSLVSAET 83
                 ++     ++V+ + 
Sbjct: 1214 LLAPYQMHSLKTAMVNGDF 1232



 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +TL +RI     +  L+ +A++  S +     +YERLEFLGD IL    +  +       
Sbjct: 976  TTLLERINIT--DLGLVREAISSRSAAEPV--NYERLEFLGDSILKYCTAIQVSAIHPEW 1031

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASF 96
             EG LS   + LV     S+ A ++ LA F
Sbjct: 1032 PEGYLSFFKDRLVGNSRLSRAAIDVGLAKF 1061


>gi|298491860|ref|YP_003722037.1| ribonuclease III ['Nostoc azollae' 0708]
 gi|298233778|gb|ADI64914.1| ribonuclease III ['Nostoc azollae' 0708]
          Length = 237

 Score = 70.7 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 102/212 (48%), Gaps = 10/212 (4%)

Query: 5   RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   L +++G +  +     LL+ ALTH+++S     +YE+LEF+GD ++ L+ + +L+ 
Sbjct: 11  QLENLVQKLGLSPDSPIKWPLLDLALTHATVSE--SANYEQLEFVGDAVVRLVAAVVLWE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H+     G+ +   + LVS    SQ+ARE  L  ++ V+     D     + +       
Sbjct: 69  HYPYCSVGDFAAIRSVLVSDRILSQLAREYGLELYLLVAGSATADHVGQESRLADAFEAV 128

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L A       +E+   ++D ++++  + ++    R + K  LQEW  A+F + PEY+V  
Sbjct: 129 LGALYLSTHNLELIRPWLDPHFQELTKEIRLDPARLNYKAALQEWTQAQFKILPEYRVME 188

Query: 180 RSGPD--HDPRFTVVVEISGLAPAQGMDCSKR 209
            + P   H+  F   V +      QG   S +
Sbjct: 189 VNQPHRTHER-FMAEVWLHKKMLGQGKGRSIK 219


>gi|300709179|ref|XP_002996756.1| hypothetical protein NCER_100079 [Nosema ceranae BRL01]
 gi|239606080|gb|EEQ83085.1| hypothetical protein NCER_100079 [Nosema ceranae BRL01]
          Length = 1131

 Score = 70.7 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 4/136 (2%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNH 62
                +EK I Y F N+  +EKA+ H S   +   S  +++LE +GD  L L +S  +F  
Sbjct: 977  NILKVEKIINYTFKNKGYIEKAMIHPSYKDNIFGSERFQKLELVGDCFLDLKVSDYIFFK 1036

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV--SSDLRKDVCSFMTSIQADVVE 120
            +  A    L     SLV+  T + +  +  L  F     S   R    + ++    D+ E
Sbjct: 1037 YTDADPETLHTHRKSLVNNHTFAMILFKSGLYDFSFTGLSDQTRDFNNNKVSKCYGDIFE 1096

Query: 121  SLIAALYLDGGIEVAG 136
            +L  A+ LD   +   
Sbjct: 1097 ALAGAVILDSEFDFEM 1112


>gi|154282055|ref|XP_001541840.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150412019|gb|EDN07407.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1437

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 25/222 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN   +
Sbjct: 1097 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVHHLFNAPRA 1156

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
                ++ +   +L +A+  + +   +            R        S +    +     
Sbjct: 1157 LPHFDMHLMRTALANADFLAFLCIGMST---------ERVRGEIAECSKENTSTKLTTRK 1207

Query: 126  LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
            + L   +    ++     +Q+     +  +   +E  E +H                  H
Sbjct: 1208 VSLWQYMRHGTSWELTAAQQQTANQYQTLQADISEALEKSHTYPWTLLSRF--------H 1259

Query: 186  DPRFTVVVE--ISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              +F   +   + G                 A    L+R G+
Sbjct: 1260 PQKFFSDLIESVLGAIFIDSHGS------LDACTAFLERIGL 1295



 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 15   YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             AF + SL+  A++ +S++     +Y+R+EFLGD IL    +  L        EG LS  
Sbjct: 922  IAFTDLSLVITAIS-ASVARE-ATNYQRIEFLGDSILKFQTTLQLTATNLIWHEGLLSRA 979

Query: 75   FNSLVSAETCSQVARELDLASF 96
             +++VS +  S  A E  L  F
Sbjct: 980  KDTVVSNKRLSYAAIEAGLDKF 1001


>gi|325123052|gb|ADY82575.1| ribonuclease III, ds RNA [Acinetobacter calcoaceticus PHEA-2]
          Length = 176

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 3/174 (1%)

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           ++I+  L++ + +  EG L+    +LV  E   ++A +L L+  + +S+   K       
Sbjct: 1   MIIANYLYHAYPNENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRE 60

Query: 113 SIQADVVESLIAALYLDGGIEV---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
           SI AD VE++I A+YLD G                   ++     +D K+ LQE+  A+ 
Sbjct: 61  SILADTVEAIIGAIYLDSGDLNLLKDIVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARK 120

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              P Y+V    G      F V   + GL    G   S+R AEQ AAAE+LK  
Sbjct: 121 KPLPVYEVVDIQGDAPHQHFKVECVVDGLPKIYGEGSSRRFAEQAAAAEILKLL 174


>gi|52549755|gb|AAU83604.1| similar to ribonuclease III [uncultured archaeon GZfos32E4]
          Length = 264

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 88/245 (35%), Gaps = 25/245 (10%)

Query: 2   SALRYS--TLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57
             +++    LE  IG+ F N +LLE+A+T  S S+ +    +Y+ LEFLGDR+L L+++ 
Sbjct: 10  ENIKFELMELEASIGHQFKNIALLEEAITTGSYSNEHPGSSNYQTLEFLGDRVLSLILAE 69

Query: 58  LLFNHFDSAKEG--ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
            LF    SA     +++     L +    ++    + L ++IR +          +  + 
Sbjct: 70  ELFKLSKSASLDEGKMTFLKAELENNLRLAEYGENIGLRNYIRANEKREDIRPKVIADVF 129

Query: 116 ADVVESLIA-ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
             +  ++           EV    +     +R  K     +       ++ +        
Sbjct: 130 EAICGAIYLDTEESIRIKEVKKILLKFEILERIKKEMSSGKGFLPIRNQFENKFREKHRC 189

Query: 175 YKVTFRS-----GPDHDPRFTVV-VEISGLAPAQ-----G-------MDCSKRAAEQVAA 216
                       G +H  R+ +    I  +   +     G          SK  A+  A 
Sbjct: 190 NPEIKFEQKSTLGEEHPTRWRIEKCSIKDIQTGEYVELRGVRSDTDKSFSSKSEAKTDAI 249

Query: 217 AEVLK 221
            +  K
Sbjct: 250 KQAYK 254


>gi|310794641|gb|EFQ30102.1| RNase3 domain-containing protein [Glomerella graminicola M1.001]
          Length = 1447

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFD 64
               LE  IGY F  ++LL +A+TH+S +        ERLEF+GD +L  ++   LF    
Sbjct: 1139 LEPLEHLIGYKFDRKTLLIQAMTHASFNLGNPFGCLERLEFMGDSVLDYVVVNRLFAVEP 1198

Query: 65   SAKEGELSVRFNSLVSAET 83
                  + +   ++V+ + 
Sbjct: 1199 PLPHQTMHLLKTAMVNGDF 1217



 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
             ++ SL+  A++  S S     +YER+EFLGD IL    +  +        E  LS   +
Sbjct: 969  ISDLSLILTAISTGSASEPT--NYERIEFLGDSILKFSATINVAALNPQWPERLLSFHKD 1026

Query: 77   SLVSAETCSQVARELDLASF 96
            ++VS  T  + A +  L  +
Sbjct: 1027 AIVSNSTLCKAAVKHGLDRY 1046


>gi|121717533|ref|XP_001276079.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
 gi|119404277|gb|EAW14653.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
          Length = 228

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 67/205 (32%), Gaps = 12/205 (5%)

Query: 27  LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86
            TH  +      +Y+RLE LGD  + L+ + L++N F     G +S     LV  ET S+
Sbjct: 6   FTHPGVGKDLNSTYDRLEILGDAYIELIATKLIWNEFKDLSSGRISQMRELLVKNETLSE 65

Query: 87  VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146
            A      S   V  D         T  + D+ ES +AA+ L   ++          +  
Sbjct: 66  FAALYGFDSRAAVPHDYLNQ-PKRWTKTKGDIFESYVAAVILSRPLDGYSVAERWLTQLW 124

Query: 147 -ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD-----HDPRFTVVVEI----- 195
                    R  + + +E    K              P          F + + +     
Sbjct: 125 LPKLRCTALRQPRLDAKEALAKKIMAKGIKLRYIDEYPPSRPSGGVQTFHIALYLTGWGW 184

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVL 220
                  G   SK  A   AA + L
Sbjct: 185 HNRHLGSGQGPSKAIAGDAAARQAL 209


>gi|261190414|ref|XP_002621616.1| RNase3 domain-containing protein [Ajellomyces dermatitidis
           SLH14081]
 gi|239591039|gb|EEQ73620.1| RNase3 domain-containing protein [Ajellomyces dermatitidis
           SLH14081]
 gi|239614955|gb|EEQ91942.1| RNase3 domain-containing protein [Ajellomyces dermatitidis ER-3]
 gi|327356568|gb|EGE85425.1| hypothetical protein BDDG_08370 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 382

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 82/217 (37%), Gaps = 18/217 (8%)

Query: 23  LEKA-LTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           L  A LTH  I +       +++YER+E LGD  + ++ + L+++ F     G LS    
Sbjct: 139 LHTAMLTHEGIHNPNTASLSEKNYERMELLGDAYIEIMATRLVWDTFPRLPAGRLSQIRE 198

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            LV  ET ++      L   + V  ++R       T ++ D+ E+ +AA+ L        
Sbjct: 199 LLVKNETLAEYTTLYGLDQKLMVPPEIRNQ-AKTWTKVKGDLFEAYVAAVILSNRDNGVQ 257

Query: 137 TFVDKYWKQRALKSGKFRRDAK------TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
              D   +    K  +  ++           +        ++   +    + P     F 
Sbjct: 258 LVEDWLTQLWIPKLEQIEKEKPVLRYKEELAKLIMDKGIRLSYLDEKKAINHPGGLQTFF 317

Query: 191 VVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222
           + V ++G          GM  SK  A   AA + L+ 
Sbjct: 318 IGVYLTGWGHKKECLGSGMGLSKVIAGNEAARKALEN 354


>gi|300868242|ref|ZP_07112873.1| hypothetical protein OSCI_3600020 [Oscillatoria sp. PCC 6506]
 gi|300333766|emb|CBN58057.1| hypothetical protein OSCI_3600020 [Oscillatoria sp. PCC 6506]
          Length = 328

 Score = 70.3 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 22/62 (35%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                     P+Y      G  H P +   V +      +G   SK+ AE+ AA + L R
Sbjct: 262 WVQANSDNTPPKYVTIHAGGAPHKPEYLAKVYVGEKLYGEGKGSSKKEAEKNAAEDALAR 321

Query: 223 EG 224
             
Sbjct: 322 LK 323



 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRIL 51
             + + + K +   F N  LL  ALTH S  +      +E  ERLEFLGD + 
Sbjct: 167 REKLAEILKLL--PFQNACLLNTALTHRSYFYENPKYVREDNERLEFLGDAVF 217


>gi|221130589|ref|XP_002165718.1| PREDICTED: similar to dicer 1 [Hydra magnipapillata]
          Length = 1615

 Score = 70.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               E  I Y F N+S L +A TH S  S+S    Y++ EFLGD IL  LI+  + ++  
Sbjct: 784 LQKFEDHISYRFLNKSHLIQAFTHLSYLSNSVTGCYQQYEFLGDAILDFLITLHIQSNTQ 843

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
           +   G+L+   +++V+  T   +A +     +I 
Sbjct: 844 NLSPGQLTYFRSAVVNNNTFGLLAIKHSFYKYIY 877



 Score = 40.7 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 11/153 (7%)

Query: 4   LRYSTLEKRIGY---AFANRSLLE--KALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           L    L +   Y      + S+L+  +ALT    S  +    ERLE LGD  L   +S  
Sbjct: 566 LDLENLLQLKNYVTENVKSPSVLKIFEALTTRQASMPF--DLERLEVLGDSFLKQAVSIF 623

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +F    S  EG+L++R    +S E   +V + + +    +      +       S   + 
Sbjct: 624 VFFQNPSFHEGKLTIRRKKCISNENLCKVGKSVGI----QNIICNSQFGTKSSNSENRNP 679

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
               +   YL   ++    +  +  + +++   
Sbjct: 680 WTVWLPPGYLRAELDDMKQYTYQNVQPKSIADC 712


>gi|164508752|emb|CAM07151.1| double-stranded RNA activated protein kinase [Danio rerio]
          Length = 682

 Score = 70.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 29/67 (43%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
            T L      K   T E++     GP H+ RFT+   ++G     G   +K+ A+Q AA 
Sbjct: 8   YTSLLNEYQQKTQCTVEFEEGPTDGPSHNKRFTMRAIVNGQKFPDGTGKTKKEAKQNAAK 67

Query: 218 EVLKREG 224
             L+   
Sbjct: 68  NALEGLK 74



 Score = 58.4 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            ++K+  R GP H+P F   V + G    +    S + A+Q AA   
Sbjct: 228 YDFKLVDRIGPPHNPIFVYKVVMDGKEYPEAQGRSAKEAKQNAAQHA 274



 Score = 42.6 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 7/73 (9%), Positives = 17/73 (23%), Gaps = 4/73 (5%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAA 211
                     H++                 +      +            +G   +K+ A
Sbjct: 97  HPNYTCWLNEHSQKSRLMFKACESTKMDPGNLTRLCTYVCKYVCDDKEFPEGYGKNKKEA 156

Query: 212 EQVAAAEVLKREG 224
           ++ AA  V +   
Sbjct: 157 KEAAALRVYEELN 169


>gi|167555192|ref|NP_001107942.1| interferon-induced, double-stranded RNA-activated protein kinase
           [Danio rerio]
 gi|163879058|gb|ABY47905.1| IFN-stimulated dsRNA-activated eIF2-alpha kinase 2 [Danio rerio]
 gi|164508750|emb|CAM07150.1| double-stranded RNA activated protein kinase [Danio rerio]
          Length = 682

 Score = 70.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 29/67 (43%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
            T L      K   T E++     GP H+ RFT+   ++G     G   +K+ A+Q AA 
Sbjct: 8   YTSLLNEYQQKTQCTVEFEEGPTDGPSHNKRFTMRAIVNGQKFPDGTGKTKKEAKQNAAK 67

Query: 218 EVLKREG 224
             L+   
Sbjct: 68  NALEGLK 74



 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            ++K+  R GP H+P F   V + G    +    + + A+Q AA   
Sbjct: 228 YDFKLVDRIGPPHNPIFVYKVVMDGKEYPEAQGRNAKEAKQNAAQHA 274



 Score = 42.6 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 7/73 (9%), Positives = 17/73 (23%), Gaps = 4/73 (5%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAA 211
                     H++                 +      +            +G   +K+ A
Sbjct: 97  HPNYTCWLNEHSQKSRLMFKACESTKMDPGNLTRLCTYVCKYVCDDKEFPEGYGKNKKEA 156

Query: 212 EQVAAAEVLKREG 224
           ++ AA  V +   
Sbjct: 157 KEAAALRVYEELN 169


>gi|196001803|ref|XP_002110769.1| hypothetical protein TRIADDRAFT_54015 [Trichoplax adhaerens]
 gi|190586720|gb|EDV26773.1| hypothetical protein TRIADDRAFT_54015 [Trichoplax adhaerens]
          Length = 366

 Score = 70.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 72/243 (29%), Gaps = 29/243 (11%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--------------------------S 39
            S   KRI    +    L  ALTH S  H   +                          S
Sbjct: 86  LSAFMKRIQQNVS-EDRLRMALTHHSFLHQNDDVNYMDDNDYNTGTGVADFKSVEDVYQS 144

Query: 40  YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
            +RL  LG   +   ++  ++  + + K   +    N  ++ +    +A  L +A  IR 
Sbjct: 145 NDRLTILGYNAMRHFVTEYVYVRYPNLKSSHIYDMINFFMNRDGMVNIAHYLGIADLIRS 204

Query: 100 SSD-LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158
                       ++ +   +V ++   L           F+      R            
Sbjct: 205 KILLYNPVKTRIISDVFCAIVGAIYMDLGPIEARSFVQDFILVQQYGREFSDIIKIEHPI 264

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
             L      +     E ++   SG   H P + V         ++G   S +AA+  A  
Sbjct: 265 FMLTAILKMQRMQPLEARLLRESGRATHFPTYVVGAFSGSKLLSEGAGPSIKAAKSAACQ 324

Query: 218 EVL 220
           E L
Sbjct: 325 EAL 327


>gi|158706444|sp|Q1DW80|DCL2_COCIM RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease DCL2; Includes: RecName:
            Full=ATP-dependent helicase DCL2
          Length = 1478

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 73/227 (32%), Gaps = 26/227 (11%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            +    S +E  +GY F  + LL  A+TH S S     SY+RLEF+GD IL +++   LF 
Sbjct: 1180 NNNMLSEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFE 1238

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                    ++ +   +LV+A+        L + ++         +               
Sbjct: 1239 SPRCFHHFDMHLMRTALVNADF----LAFLCMNAYREEDRGEAVENSKRR---------- 1284

Query: 122  LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
                + +         F+        + + +       +L E    K   +  Y  T   
Sbjct: 1285 --VTVAMTKRRAYLWGFMKHSASWDIVNAQQRAAKQYEKLHEEIDEKLRSSKTYPWTLLC 1342

Query: 182  GPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
              D    F   V   I G                 A    L+R G+ 
Sbjct: 1343 RLDAAKFFSDIVE-SILGAIFIDSQGS------MPACRIFLERIGLI 1382



 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F+N SL+  A+  SS +     +Y+RLEFLGD +L L  S  L        EG L++R  
Sbjct: 1012 FSNLSLVLTAI--SSSAAREASNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKG 1069

Query: 77   SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            ++VS    +  A +  L  FI            +  S   D + +
Sbjct: 1070 NIVSNGYLANAALQTGLDKFILTKP---FTGAKWRPSYNTDHINT 1111


>gi|119190771|ref|XP_001245992.1| hypothetical protein CIMG_05433 [Coccidioides immitis RS]
          Length = 1435

 Score = 70.0 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 73/227 (32%), Gaps = 26/227 (11%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            +    S +E  +GY F  + LL  A+TH S S     SY+RLEF+GD IL +++   LF 
Sbjct: 1137 NNNMLSEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFE 1195

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                    ++ +   +LV+A+        L + ++         +               
Sbjct: 1196 SPRCFHHFDMHLMRTALVNADF----LAFLCMNAYREEDRGEAVENSKRR---------- 1241

Query: 122  LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
                + +         F+        + + +       +L E    K   +  Y  T   
Sbjct: 1242 --VTVAMTKRRAYLWGFMKHSASWDIVNAQQRAAKQYEKLHEEIDEKLRSSKTYPWTLLC 1299

Query: 182  GPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
              D    F   V   I G                 A    L+R G+ 
Sbjct: 1300 RLDAAKFFSDIVE-SILGAIFIDSQGS------MPACRIFLERIGLI 1339



 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F+N SL+  A+  SS +     +Y+RLEFLGD +L L  S  L        EG L++R  
Sbjct: 969  FSNLSLVLTAI--SSSAAREASNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKG 1026

Query: 77   SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            ++VS    +  A +  L  FI            +  S   D + +
Sbjct: 1027 NIVSNGYLANAALQTGLDKFILTKP---FTGAKWRPSYNTDHINT 1068


>gi|302808147|ref|XP_002985768.1| hypothetical protein SELMODRAFT_122841 [Selaginella moellendorffii]
 gi|300146677|gb|EFJ13346.1| hypothetical protein SELMODRAFT_122841 [Selaginella moellendorffii]
          Length = 219

 Score = 69.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               L++++GY F N+ +L  AL   S  H    ++ RLEFLGD +L  L++  L   F 
Sbjct: 73  DLKELQEKLGYQFRNKQVLRVAL---SF-HDDNFTFRRLEFLGDAVLDYLVTRHLVRSFP 128

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
               G  +    + ++ E  S ++       +++   
Sbjct: 129 DQSAGRHNTIKQATINKEHYSCISIRHGFHVYLQKVH 165


>gi|218196456|gb|EEC78883.1| hypothetical protein OsI_19246 [Oryza sativa Indica Group]
 gi|222630918|gb|EEE63050.1| hypothetical protein OsJ_17858 [Oryza sativa Japonica Group]
          Length = 350

 Score = 69.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 89/269 (33%), Gaps = 53/269 (19%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +E+ + Y F +  LLE+ALTH S +     SY+RLEF+GD  LGL  S  L+    + 
Sbjct: 38  ARVERLLRYQFRDGRLLEEALTHQSFADDAV-SYQRLEFVGDSALGLAFSNFLYLTNPTL 96

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---------------------- 104
             G LS    + +S E  ++VA   DL   +R +                          
Sbjct: 97  GPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTV 156

Query: 105 KDVCS--FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
               S      + AD+VE++ AA+Y+D   ++   +    W     +          +  
Sbjct: 157 PYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKRLTWLHGLQEIRWTVNTNNIKDW 216

Query: 163 EWAHAKFGVTPEYKVTFRS-----------------GPDHDPR--FT---------VVVE 194
                         +                        H     F          V V 
Sbjct: 217 INNFIYGKRLVTRWLFEPIITAETIDEQPVTMLHELCQKHGKMAQFKTWQKGGMTVVNVF 276

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++G     G    K  A+  AA +  ++ 
Sbjct: 277 VAGELVGIGSSEQKVIAKLNAARDATRKL 305


>gi|115462923|ref|NP_001055061.1| Os05g0271300 [Oryza sativa Japonica Group]
 gi|50878449|gb|AAT85223.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|55908895|gb|AAV67838.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578612|dbj|BAF16975.1| Os05g0271300 [Oryza sativa Japonica Group]
          Length = 344

 Score = 69.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 89/269 (33%), Gaps = 53/269 (19%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +E+ + Y F +  LLE+ALTH S +     SY+RLEF+GD  LGL  S  L+    + 
Sbjct: 32  ARVERLLRYQFRDGRLLEEALTHQSFADDAV-SYQRLEFVGDSALGLAFSNFLYLTNPTL 90

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---------------------- 104
             G LS    + +S E  ++VA   DL   +R +                          
Sbjct: 91  GPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTV 150

Query: 105 KDVCS--FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
               S      + AD+VE++ AA+Y+D   ++   +    W     +          +  
Sbjct: 151 PYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKRLTWLHGLQEIRWTVNTNNIKDW 210

Query: 163 EWAHAKFGVTPEYKVTFRS-----------------GPDHDPR--FT---------VVVE 194
                         +                        H     F          V V 
Sbjct: 211 INNFIYGKRLVTRWLFEPIITAETIDEQPVTMLHELCQKHGKMAQFKTWQKGGMTVVNVF 270

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++G     G    K  A+  AA +  ++ 
Sbjct: 271 VAGELVGIGSSEQKVIAKLNAARDATRKL 299


>gi|166368821|ref|YP_001661094.1| ribonuclease III [Microcystis aeruginosa NIES-843]
 gi|166091194|dbj|BAG05902.1| ribonuclease III [Microcystis aeruginosa NIES-843]
          Length = 234

 Score = 69.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 93/207 (44%), Gaps = 8/207 (3%)

Query: 5   RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  TL +++G +        LL+ ALTH SIS    ++YE+LEF+GD ++ L  + +L  
Sbjct: 11  QLKTLVEKLGLSADVPVKWDLLDLALTHPSISRD--KNYEQLEFVGDSVVRLAAAEVLLE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  A  GE +   + +VS  T ++ A       ++ VSS    D    ++ +       
Sbjct: 69  TYPEALVGEFAALRSMMVSDRTLAEFADRYGFERYLLVSSSTSIDQAGRISRLADAFEAV 128

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L A       + +  +++D+  +++   ++    R++ K  LQEW  A +   P+Y V  
Sbjct: 129 LGALYLSTQTMVLVRSWLDEPLREKAAEIRRDPARQNYKDALQEWTQATYKKLPQYLVKE 188

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDC 206
            +  D +  F   V ++      G   
Sbjct: 189 INSLDQER-FCAEVWLNDQKLGVGTGR 214


>gi|149921056|ref|ZP_01909515.1| ribonuclease III [Plesiocystis pacifica SIR-1]
 gi|149818060|gb|EDM77517.1| ribonuclease III [Plesiocystis pacifica SIR-1]
          Length = 244

 Score = 69.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 16/222 (7%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
            A +   L   +G+AFA   LL  ALT  S ++  ++    S   LEF GD +L L+ + 
Sbjct: 5   EASQLDPLMATLGHAFAQPQLLRVALTVGSWANENRDAGWPSNACLEFFGDAVLDLVAAD 64

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+  F    EG L+    SLVS  + ++ AR +DL  +I +     +          AD
Sbjct: 65  ALWRRFPRLGEGALTRLRASLVSERSLAKAARSIDLGRWIYLGRGDEQRGARERDGTLAD 124

Query: 118 VVESLIAALYLDGGIEVAGT-------FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
            +E+++ A +LD               F   + ++    + +   D K+ LQ+   A+  
Sbjct: 125 ALEAVLGAAFLDAREAGGDPSVAAAQVFERLFGERVRSLAPEDGLDPKSRLQQLVQAERR 184

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEI--SGL---APAQGMDCS 207
           +TP Y       P  DP +   VE+  +G       +G   S
Sbjct: 185 LTPVYVAIGEPPPADDPHWRARVELRPAGKPVEVLGEGEGRS 226


>gi|289614471|emb|CBI58755.1| unnamed protein product [Sordaria macrospora]
          Length = 1365

 Score = 69.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 2/175 (1%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH 62
            +   LEK +GYAF  +SLL +A+TH S          YERLEFLGD IL +++   L   
Sbjct: 997  QLEPLEKAMGYAFTKKSLLIEAMTHPSCPGLGDNDSCYERLEFLGDAILDVIVVKRLMAE 1056

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                +     +                 ++       + ++       + S+       +
Sbjct: 1057 TGPNELAHNDMHEYLSSVVTADIMAFLAMEWVIARTDTVEIDPARLDAIDSLPFSKHTKI 1116

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
              A  +    + A     ++       +    ++    L++          E   
Sbjct: 1117 TPANLVSNTEDWAFWRFMRHNSSHVASAQTVTQERYLTLRDDIRTAIWEKHELPW 1171



 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           N  L+  ALT  SI      +YERLEFLGD IL           F +  E  LS   +SL
Sbjct: 823 NLLLVTTALT--SIGSRAPTNYERLEFLGDTILKFCACLTASALFPNHHERLLSQWKDSL 880

Query: 79  VSAETCSQVARELDLASFIRVSSDLR 104
           V+     + + +  L  +I  S   +
Sbjct: 881 VNNVRLCRASIDFGLDEYIIHSMASK 906


>gi|238567352|ref|XP_002386225.1| hypothetical protein MPER_15614 [Moniliophthora perniciosa FA553]
 gi|215437540|gb|EEB87155.1| hypothetical protein MPER_15614 [Moniliophthora perniciosa FA553]
          Length = 116

 Score = 69.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 9  LEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAK 67
          +E  IG+ F  + LL +ALTH+S        SYER+EFLGD +L ++++  L+       
Sbjct: 8  VETIIGHTFKRKLLLVEALTHASHQQDLGTVSYERMEFLGDAVLDMIVNDYLYRAPGKEY 67

Query: 68 EGELSVRFNSLVSAETCSQVAR 89
                     V          
Sbjct: 68 SPGHIYLRKVAVVNGHILAFIC 89


>gi|171689324|ref|XP_001909602.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944624|emb|CAP70735.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1406

 Score = 69.2 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGL 53
                LEK IGY F  +SLL +A+TH S +    + S +RLEFLGD IL  
Sbjct: 1076 NMHLLEKLIGYTFKKKSLLIEAMTHPSFNVQDTRASLDRLEFLGDAILDY 1125


>gi|321457594|gb|EFX68677.1| hypothetical protein DAPPUDRAFT_329838 [Daphnia pulex]
          Length = 291

 Score = 69.2 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  E  + Y   ++ +L +A TH   +    ++Y+RLE +GD  LG L +   F    +
Sbjct: 84  LAKFENILHYTSNDKEVLLEAFTH--GNSMKSQNYQRLELIGDAALGFLSALNFFIKSLT 141

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
              G+++   ++ V  +T    A +      ++    
Sbjct: 142 HTSGDITKLRSACVCNDTFGVWAAKYGFHEHVQNLPP 178


>gi|321468043|gb|EFX79030.1| hypothetical protein DAPPUDRAFT_319984 [Daphnia pulex]
          Length = 488

 Score = 69.2 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  E  + Y   ++ +L +A TH   +    ++Y+RLE +GD  LG L +   F    +
Sbjct: 84  LAKFENILHYTSNDKEVLLEAFTH--GNSMKSQNYQRLELIGDAALGFLSALNFFKKSLT 141

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
              G+++   ++ V  +T    A +      ++    
Sbjct: 142 HTSGDITKLRSACVCNDTFGVWAAKYGFHEHVQNLPP 178



 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDR 49
               E+ + Y+F  + +L +ALT     +S +  +Y+RLE +GD 
Sbjct: 330 VKAFEEILNYSFNYKEVLLEALT---YGNSIRSLNYQRLEVIGDA 371


>gi|121807816|sp|Q2VF18|DCL2_CRYPA RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease DCL-2; Includes: RecName:
            Full=ATP-dependent helicase DCL-2
 gi|77632776|gb|ABB00357.1| dicer-like protein 2 [Cryphonectria parasitica]
          Length = 1451

 Score = 68.8 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 1/98 (1%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63
                LE+ I Y+F  ++LL +A+TH S +       Y+RLEF+GD IL  +I   +F   
Sbjct: 1152 DLQLLEQLIEYSFCEKALLVEAVTHPSYNVSGTVACYDRLEFIGDAILDYIIVEEVFALE 1211

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
             + +  ++ +   +LV+A+    +  E           
Sbjct: 1212 PALENWQMHLLRTALVNADILGFLIMEWSYKQMGFEVC 1249



 Score = 43.0 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
              +N S+L +A+   S      E+YER+EFLGD IL   I+  L        EG LS+  
Sbjct: 980  RISNVSMLVEAICAKSA--RTPENYERIEFLGDSILKTCITVNLAATKLHLPEGILSLMK 1037

Query: 76   NSLVSAETCSQVARELDLASF 96
            + LVS     + A + +L  F
Sbjct: 1038 DRLVSNARLCRAACDAELDQF 1058


>gi|321451362|gb|EFX63042.1| hypothetical protein DAPPUDRAFT_336024 [Daphnia pulex]
          Length = 270

 Score = 68.8 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFD 64
               E+ + Y+F ++ +L +ALT     +S +  +Y+RLE +GD   G L +   F    
Sbjct: 100 VKAFEEILNYSFNDKEVLLEALT---YGNSIRSLNYQRLEVIGDAAFGFLAALNFFKQSL 156

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
               G++S   ++ V  +T   +A + +  ++I+     
Sbjct: 157 YHSAGDISQLRSACVCNDTFGMLAAKRNFHAYIQNLPPN 195


>gi|242221926|ref|XP_002476701.1| predicted protein [Postia placenta Mad-698-R]
 gi|220724029|gb|EED78105.1| predicted protein [Postia placenta Mad-698-R]
          Length = 232

 Score = 68.8 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLF 60
           + S +E  +GY F +++LL +ALTH+S        SYERLEFLGD  L ++++  L+
Sbjct: 176 QLSLVETMLGYEFTHKALLVQALTHASYHGDLTTMSYERLEFLGDSALDMVVTDWLY 232



 Score = 38.8 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 2/97 (2%)

Query: 26  ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
           ALT          +Y+RLE LGD +L  + S  LF  +    EG L+ R +  VS    +
Sbjct: 1   ALTAP--VAQELINYQRLETLGDTVLKYITSIKLFADYPLWHEGYLARRKDHAVSNVQLA 58

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           + A    L  +I     + +       S   D+    
Sbjct: 59  KCAISKGLYQWIIRDRFVPRKWRPHYMSGPEDIGSRT 95


>gi|196229194|ref|ZP_03128059.1| dsRNA-specific ribonuclease [Chthoniobacter flavus Ellin428]
 gi|196226426|gb|EDY20931.1| dsRNA-specific ribonuclease [Chthoniobacter flavus Ellin428]
          Length = 69

 Score = 68.8 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 3/62 (4%)

Query: 7  STLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHF 63
          + LE+RI Y F N  LL +ALTH S+ H    +    +RLEFLGD +L L+ +  LF+ F
Sbjct: 2  NPLEQRIKYKFRNSLLLAEALTHPSLGHETQRHHFDNQRLEFLGDAVLQLIFTEYLFDQF 61

Query: 64 DS 65
            
Sbjct: 62 PR 63


>gi|322707759|gb|EFY99337.1| Dicer-like protein 2 [Metarhizium anisopliae ARSEF 23]
          Length = 1442

 Score = 68.8 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFD 64
               LE  +GY F  +SLL +A+TH S    Y + SYE LEF+GD IL  +I   ++    
Sbjct: 1155 LKPLEHLVGYQFNKKSLLIEAMTHQSCMFDYQRRSYEHLEFIGDAILDFIIVRKMYTAEP 1214

Query: 65   SAKEGELSVRFNSLVSAET 83
                 ++     ++V+A+ 
Sbjct: 1215 LLAPHQMHSLKTAMVNADF 1233



 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +T+ +RI     +  L+ +A++  S +     +YERLEFLGD IL    +  +       
Sbjct: 977  TTILERINIT--DLRLVREAISSRSAAEPV--NYERLEFLGDSILKYCTAIQVSAIHPEW 1032

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASF 96
             EG LS   + LVS    S+ A ++ LA F
Sbjct: 1033 PEGYLSFFKDRLVSNSRLSRAAIDVGLAKF 1062


>gi|307105017|gb|EFN53268.1| hypothetical protein CHLNCDRAFT_53967 [Chlorella variabilis]
          Length = 947

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 63/260 (24%), Positives = 90/260 (34%), Gaps = 43/260 (16%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFNH 62
            +E   G    +  L   ALTH S           +SYERLEFLGD +LGL   TLL   
Sbjct: 684 RVEALTGCGVRDMGLYRTALTHKSALPLELRLEKLQSYERLEFLGDSVLGLCCRTLLMAR 743

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------LRKDV 107
              + EG++S R + LVS  + ++ A  L L  ++ +                       
Sbjct: 744 CPDSDEGQMSRRNSLLVSGASNARYAAFLGLDRYVLLEPRALRHAPLEASSEQPWHSSAA 803

Query: 108 CSFMTSIQADVVES------------------LIAALYLDGGIEVAGTFVDKYWKQRALK 149
            S   S +     +                  L A     G +      +         +
Sbjct: 804 GSTRRSRRRCHFSAGEGAQHKPGLLADAFEALLGALYLDRGFVVARRFCMRVLEACVEWE 863

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGM 204
             +  +D K  L  +A A     P + V   S  ++      P +TV V   G     G 
Sbjct: 864 QLEAAQDFKALLCRYAGAHQKPQPRFSVRSTSQREYKAGLQLPWWTVEVAFGGRVVGSGG 923

Query: 205 DCSKRAAEQVAAAEVLKREG 224
              KR AEQ AA E L+  G
Sbjct: 924 SFDKRGAEQAAAREALEGLG 943


>gi|320035561|gb|EFW17502.1| RNA helicase/RNAse III [Coccidioides posadasii str. Silveira]
          Length = 1448

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            +    S +E  +GY F  + LL  A+TH S S     SY+RLEF+GD IL +++   LF 
Sbjct: 1137 NNNMLSEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFE 1195

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARE 90
                    ++ +   +LV+A+  + +   
Sbjct: 1196 SPRGFHHFDMHLMRTALVNADFLAFLCMN 1224



 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F+N SL+  A+  SS +     +Y+RLEFLGD +L L  S  L        EG L++R  
Sbjct: 969  FSNLSLVLTAI--SSSAAREASNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKG 1026

Query: 77   SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            ++VS    +  A +  L  FI            +  S   D + +
Sbjct: 1027 NVVSNGYLANAALQTGLDKFILTKP---FTGAKWRPSYNTDHINT 1068


>gi|303315249|ref|XP_003067632.1| Type III restriction enzyme, res subunit family protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240107302|gb|EER25487.1| Type III restriction enzyme, res subunit family protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1448

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            +    S +E  +GY F  + LL  A+TH S S     SY+RLEF+GD IL +++   LF 
Sbjct: 1137 NNNMLSEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFE 1195

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARE 90
                    ++ +   +LV+A+  + +   
Sbjct: 1196 SPRGFHHFDMHLMRTALVNADFLAFLCMN 1224



 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F+N SL+  A+  SS +     +Y+RLEFLGD +L L  S  L        EG L++R  
Sbjct: 969  FSNLSLVLTAI--SSSAAREASNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKG 1026

Query: 77   SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            ++VS    +  A +  L  FI            +  S   D + +
Sbjct: 1027 NVVSNGYLANAALQTGLDKFILTKP---FTGAKWRPSYNTDHINT 1068


>gi|118370147|ref|XP_001018276.1| Dicer-related RNase III protein Dcr1p, putative [Tetrahymena
            thermophila]
 gi|89300043|gb|EAR98031.1| Dicer-related RNase III protein Dcr1p, putative [Tetrahymena
            thermophila SB210]
          Length = 1903

 Score = 68.8 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 91/242 (37%), Gaps = 30/242 (12%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKAL-THSSISHSYQ-ESYERLEFLGDRILGLLISTLLFN 61
            +  S  EK + Y F ++SLL KAL  HS+ +  +  + Y+ LEFLGD ++ +L+ +  ++
Sbjct: 1637 IAISGFEKILNYTFKDKSLLIKALNCHSNSNFEHYFQDYQILEFLGDALIEILVVSHGYH 1696

Query: 62   -----HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD---------- 106
                               + L+S +  S++A       +    S  ++D          
Sbjct: 1697 ISRNRQKKINSPYFFCEMKSLLLSNDFMSRMAILNKFHYYALNISKYQQDEIIQFIEDCN 1756

Query: 107  ----------VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
                        +    +  D+ ES+  A+ +D  I    +   K +    +    F + 
Sbjct: 1757 LNTKFKESVSHQANSPKVLGDLWESVAGAIIMDSDISTFVSIYGKLYAPYIIHFVTFYQK 1816

Query: 157  AKTELQEWAHAKFGVTPEY-KVTFRSGPDHDPRFTVVVE--ISGLAPAQGMDCSKRAAEQ 213
                ++E        T E          D D ++ V V   I  +    G+D S+  AE+
Sbjct: 1817 IIFNVKEKVQLVAQQTYEQLGKITEVVKDTDGQYKVKVTILIKQIKVGTGIDYSETLAEK 1876

Query: 214  VA 215
             A
Sbjct: 1877 KA 1878



 Score = 36.4 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            +  LL ++ +  S S +  ++ E LE +GD ++  + S  L+ H  +  E  L++     
Sbjct: 1360 DLELLIESFSQISYSKT--KNLELLEVIGDVVIKYISSLYLYLHLPNQSENALTMIRTIF 1417

Query: 79   VSAETCSQVARELDLASFIRVSSDLRKD 106
            ++ +     A    L  +++       D
Sbjct: 1418 INNKYLGISAFRNGLQFYVQTKRPSSYD 1445


>gi|221361577|emb|CAX18337.1| dicel-like 2 [Nicotiana benthamiana]
          Length = 224

 Score = 68.0 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 1   MSALRYST---LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGL 53
           M+A +      LE  + Y F + SLL +ALTH S         Y+RLEFLGD +L  
Sbjct: 168 MNAEKLVNVRYLESLLHYKFHDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDVVLDY 224


>gi|115478498|ref|NP_001062844.1| Os09g0315100 [Oryza sativa Japonica Group]
 gi|113631077|dbj|BAF24758.1| Os09g0315100 [Oryza sativa Japonica Group]
          Length = 245

 Score = 68.0 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 1   MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLIS 56
           M A   +   +LE  +GY F +  LL +ALTH S         Y+RLEFLGD IL  L +
Sbjct: 181 MKAEEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFT 240

Query: 57  TLLF 60
              +
Sbjct: 241 EYYY 244


>gi|119510841|ref|ZP_01629966.1| Ribonuclease III [Nodularia spumigena CCY9414]
 gi|119464520|gb|EAW45432.1| Ribonuclease III [Nodularia spumigena CCY9414]
          Length = 239

 Score = 68.0 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 8/211 (3%)

Query: 5   RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  +L +R+G          LL+ ALTH ++S     +YE+LEF+GD ++ L  + +L+ 
Sbjct: 11  QLESLVRRLGLPPGLPIKWDLLDLALTHPTVSE--SANYEQLEFVGDAVVRLAAAVVLWE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +     G+ +   + LVS    +Q+ARE  L  ++ V+     D     + +       
Sbjct: 69  TYPDCPVGDFAAIRSVLVSDRILAQLAREYSLQLYLLVAGSATSDKIGLESRLADAFEAV 128

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L A       +E+   ++D + K+    ++    R + K  LQEW  A+F V PEY+VT 
Sbjct: 129 LGALYLSTNNLELIRPWLDFHLKKLATEIRLDPARLNYKAALQEWTQAEFKVLPEYRVTE 188

Query: 180 RSGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209
            +  + +  RF   V +      +G   S +
Sbjct: 189 VNQSNQNQERFAAEVWLHDNKLGEGKGRSIK 219


>gi|218439615|ref|YP_002377944.1| ribonuclease III [Cyanothece sp. PCC 7424]
 gi|218172343|gb|ACK71076.1| Ribonuclease III [Cyanothece sp. PCC 7424]
          Length = 235

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 5/192 (2%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           + SLL+ AL H S S     +Y++LEF+GD ++ L  + +L   +  A  GE +   + +
Sbjct: 28  DWSLLDLALIHPSFSKEV--NYQQLEFVGDAVVRLAAAEVLLETYPEAPVGEFAALRSIM 85

Query: 79  VSAETCSQVARELDLASFIRV--SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           VS  T ++ A    L  ++         +       +   + V   +        +    
Sbjct: 86  VSDRTLAEFADVFGLERYLLTAAYVSGDEAGRISRLADAFEAVLGALYLSTHTMQLVRPW 145

Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH-DPRFTVVVEI 195
                  K   +     R + K  LQEW  A + + P+Y+V      ++ + RF   V +
Sbjct: 146 LDELLEKKAAEILQDPARLNYKDALQEWTQAHYKLLPQYRVQENPLKNNLEERFLAEVWL 205

Query: 196 SGLAPAQGMDCS 207
           +      G   +
Sbjct: 206 NDQKLGMGKGRT 217


>gi|310794561|gb|EFQ30022.1| RNase3 domain-containing protein [Glomerella graminicola M1.001]
          Length = 334

 Score = 67.6 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 79/251 (31%), Gaps = 43/251 (17%)

Query: 16  AFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             +N  L   A TH  ++ +  + SY+RLE+LGD  L L+ S+L+F  F     G+ S  
Sbjct: 61  KISNPVLEMAAFTHVGMAKTKTDLSYDRLEWLGDAYLELISSSLIFQTFGGLPTGKCSQL 120

Query: 75  FNSLVSAETCSQVARELD-------LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
              L+      + +            + +    +         +  +  D+ E+ +AA+ 
Sbjct: 121 RELLIRNSNLGEYSAHYKLFERAKLPSEYRPNGTLPAMAKPHEIQKVHGDLFEAYVAAIA 180

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE-----------LQEWAHAKFGVTPEYK 176
           L   +       +      A       R    +                          +
Sbjct: 181 LSDPVSGLSRAAEWLKTLWARTIRDQIRTNARDPGMGMVKELGGTTTVETQVPPKVRLSQ 240

Query: 177 VTFRSG--------PDHDPR---------FTVVVEISG-----LAPAQGMDCSKRAAEQV 214
           +    G        P  + +         FTV V + G          G D +K+ A Q 
Sbjct: 241 IISAKGINIRYEDMPSANKKDKYNKKLALFTVGVYLDGWGEKNKLLGTGSDLNKKEAGQK 300

Query: 215 AAAEVL--KRE 223
           AA   L  K+ 
Sbjct: 301 AAQMALNNKKL 311


>gi|168046558|ref|XP_001775740.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672892|gb|EDQ59423.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 792

 Score = 67.6 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query: 5   RYSTLEKRIGYAFANRSLLEKAL--------THSSISHSYQESYERLEFLGDRILGLLIS 56
              TLEK+IGY F  +SLL  A         T  S        ++RLEFLGD +L  LI 
Sbjct: 539 DIVTLEKKIGYQFKCKSLLLSAFDYGDEVTFT-QSGVPRGSFQFQRLEFLGDSVLDFLIM 597

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
                 + +    +L+    + V++E  +  A       +++  S 
Sbjct: 598 RHFVQLYSAFNPEQLNDLRQATVNSENFACTAIRHGFHHYLKRMSP 643



 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           ++ALT  S +     SYE LE LGD +L  +    ++  F S     L    + LVS   
Sbjct: 374 QEALT--SGACEGNHSYETLELLGDSVLNFIGGVHMYIDFPSCTSELLHSYRHDLVSNRN 431

Query: 84  CSQVARELDLASFIR 98
             +      L  +I 
Sbjct: 432 LYKCGLACGLPGYIF 446


>gi|295673975|ref|XP_002797533.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226280183|gb|EEH35749.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 1450

 Score = 67.6 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY F  +  L +A TH S +     SY+RLEFLGD IL  +I   LFN   +
Sbjct: 1136 FRDIESLVGYTFNKKVFLAQAFTHPS-NPGSTMSYQRLEFLGDSILDHIIVDHLFNSPRN 1194

Query: 66   AKEGELSVRFNSLVSAETCSQVAREL 91
                ++ +   SL +A+  + +   +
Sbjct: 1195 FPHVDMHLMRASLANADFLAFLCIGM 1220



 Score = 42.6 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F + +L+  AL           +Y+R+EFLGD IL    S  L        EG LS   +
Sbjct: 965  FTDLNLVITALCAP--DAREATNYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNAKD 1022

Query: 77   SLVSAETCSQVARELDLASFIR 98
             +VS +  S  A E  L  FI 
Sbjct: 1023 EVVSNKRLSYAAIETGLDKFIF 1044


>gi|242807890|ref|XP_002485049.1| nucleolar RNAse III, putative [Talaromyces stipitatus ATCC 10500]
 gi|218715674|gb|EED15096.1| nucleolar RNAse III, putative [Talaromyces stipitatus ATCC 10500]
          Length = 371

 Score = 67.6 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 74/224 (33%), Gaps = 17/224 (7%)

Query: 16  AFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           +  N SL     TH        +   +++Y+RLE LGD  + ++ + L++  F     G 
Sbjct: 117 SIHNASLERAVFTHPGAPVNVAAEGMEQNYDRLEVLGDAYVEVIATRLIWEQFKDMPAGR 176

Query: 71  LSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +S     LV  ET +  A +          + + ++        I+ DV E+ +AA+ L 
Sbjct: 177 MSQVREDLVKNETLAGFATQYGFDKRVSVSALEDQRAQTKRWLKIRGDVFEAYVAAVILS 236

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRR------DAKTELQEWAHAKFGVTPEYKVTFRSGP 183
             +           +    +              +   +        +    +   +   
Sbjct: 237 NPLHGFDIVEKWLRELWLPRLLHVPPAQTALKHKEQLAKRIMGKGIKLRYVEEQPAKQLE 296

Query: 184 DHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222
                F + V ++G          G   +K  A   AA + L+ 
Sbjct: 297 GGMQTFYIGVYLTGWGWQDQHLGSGSGLNKAIAGDEAAHKALEN 340


>gi|50897087|dbj|BAD34724.1| Dicer-related RNase III protein Dcl1p [Tetrahymena thermophila]
          Length = 1275

 Score = 67.6 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 91/242 (37%), Gaps = 30/242 (12%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKAL-THSSISHSYQ-ESYERLEFLGDRILGLLISTLLFN 61
            +  S  EK + Y F ++SLL KAL  HS+ +  +  + Y+ LEFLGD ++ +L+ +  ++
Sbjct: 1009 IAISGFEKILNYTFKDKSLLIKALNCHSNSNFEHYFQDYQILEFLGDALIEILVVSHGYH 1068

Query: 62   -----HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD---------- 106
                               + L+S +  S++A       +    S  ++D          
Sbjct: 1069 ISRNRQKKINSPYFFCEMKSLLLSNDFMSRMAILNKFHYYALNISKYQQDEIIQFIEDCN 1128

Query: 107  ----------VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
                        +    +  D+ ES+  A+ +D  I    +   K +    +    F + 
Sbjct: 1129 LNTKFKESVSHQANSPKVLGDLWESVAGAIIMDSDISTFVSIYGKLYAPYIIHFVTFYQK 1188

Query: 157  AKTELQEWAHAKFGVTPEY-KVTFRSGPDHDPRFTVVVE--ISGLAPAQGMDCSKRAAEQ 213
                ++E        T E          D D ++ V V   I  +    G+D S+  AE+
Sbjct: 1189 IIFNVKEKVQLVAQQTYEQLGKITEVVKDTDGQYKVKVTILIKQIKVGTGIDYSETLAEK 1248

Query: 214  VA 215
             A
Sbjct: 1249 KA 1250



 Score = 36.1 bits (81), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +  LL ++ +  S S +  ++ E LE +GD ++  + S  L+ H  +  E  L++     
Sbjct: 732 DLELLIESFSQISYSKT--KNLELLEVIGDVVIKYISSLYLYLHLPNQSENALTMIRTIF 789

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKD 106
           ++ +     A    L  +++       D
Sbjct: 790 INNKYLGISAFRNGLQFYVQTKRPSSYD 817


>gi|325185579|emb|CCA20062.1| Dicerlike 1 (DCL1) putative [Albugo laibachii Nc14]
          Length = 1609

 Score = 67.6 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 13/93 (13%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISH-----------SYQESYERLEFLGDRI 50
              +R   LE+R+ Y F N+ LL +A+TH S+             S+Q +YERLE+LGD +
Sbjct: 1378 KKMRL--LEQRLCYRFRNKLLLLEAITHPSVRRLEIVMDNEKRVSWQGNYERLEYLGDAL 1435

Query: 51   LGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
            +  L  +  F   D+   G LS    + VS + 
Sbjct: 1436 IEYLTVSYAFLAHDTWLPGSLSNWKAATVSNDA 1468



 Score = 39.1 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 26/200 (13%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              + STL + IG    + +LL  A        + + +YER E LGD  L L  S  ++  
Sbjct: 1185 KAQVSTLMRHIGLEL-DMNLLGNA--------TSKPAYERCEVLGDTFLKLETSWYMYQM 1235

Query: 63   FDSAK-EGELSVRFNSLVSAETCSQVARELDLASFIRV---------------SSDLRKD 106
                  EG LS+    ++  +   Q +   +L  +I                        
Sbjct: 1236 RRDIPDEGTLSMLRRDIIRNDRLCQFSLLKELHHYIVYPAELEQHPFSCWKPSCMGKTPQ 1295

Query: 107  VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
              +  +   ADV+E++  A  +  G + A  F++         S +F +           
Sbjct: 1296 SINAPSKWIADVLEAICGAYIIGHGEKGARYFLNWVGIHVLDDSFEFSKR-FYPDCYPKT 1354

Query: 167  AKFGVTPEYKVTFRSGPDHD 186
                          S   H+
Sbjct: 1355 LFPEAFKHVGKWKFSILHHE 1374


>gi|158705874|sp|A4RHU9|DCL2_MAGO7 RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease DCL2; Includes: RecName:
            Full=ATP-dependent helicase DCL2
          Length = 1485

 Score = 67.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            LE+ +GY+F  +SLL +A+TH+S +   S   S ERLEFLGD +L  ++   LF+  D A
Sbjct: 1171 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPA 1230

Query: 67   KEGELSVR 74
                 ++ 
Sbjct: 1231 PIEHYNMH 1238



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F +  L+   +T  S S     +YER+EFLGD +L L  +     +     EG LS+  +
Sbjct: 1002 FKDIDLVMMVIT--SSSAGRLTNYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKD 1059

Query: 77   SLVSAETCSQVARELDLASFIRVSS 101
             LVS     + A  L L  FI    
Sbjct: 1060 RLVSNSRLCKAATALGLDQFIITRQ 1084


>gi|145612491|ref|XP_001412113.1| hypothetical protein MGG_07167 [Magnaporthe oryzae 70-15]
 gi|145019646|gb|EDK03874.1| hypothetical protein MGG_07167 [Magnaporthe oryzae 70-15]
          Length = 819

 Score = 67.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE+ +GY+F  +SLL +A+TH+S +   S   S ERLEFLGD +L  ++   LF+  D A
Sbjct: 505 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPA 564

Query: 67  KEGELSVR 74
                ++ 
Sbjct: 565 PIEHYNMH 572



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           F +  L+   +T  S S     +YER+EFLGD +L L  +     +     EG LS+  +
Sbjct: 336 FKDIDLVMMVIT--SSSAGRLTNYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKD 393

Query: 77  SLVSAETCSQVARELDLASFIRVSS 101
            LVS     + A  L L  FI    
Sbjct: 394 RLVSNSRLCKAATALGLDQFIITRQ 418


>gi|145612483|ref|XP_367242.2| hypothetical protein MGG_12357 [Magnaporthe oryzae 70-15]
 gi|145019642|gb|EDK03870.1| hypothetical protein MGG_12357 [Magnaporthe oryzae 70-15]
          Length = 1386

 Score = 67.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            LE+ +GY+F  +SLL +A+TH+S +   S   S ERLEFLGD +L  ++   LF+  D A
Sbjct: 1072 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPA 1131

Query: 67   KEGELSVR 74
                 ++ 
Sbjct: 1132 PIEHYNMH 1139



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           F +  L+   +T  S S     +YER+EFLGD +L L  +     +     EG LS+  +
Sbjct: 903 FKDIDLVMMVIT--SSSAGRLTNYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKD 960

Query: 77  SLVSAETCSQVARELDLASFIRVSS 101
            LVS     + A  L L  FI    
Sbjct: 961 RLVSNSRLCKAATALGLDQFIITRQ 985


>gi|50294317|ref|XP_449570.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528884|emb|CAG62546.1| unnamed protein product [Candida glabrata]
          Length = 449

 Score = 67.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              +  +  +   H S+ +           + + ERLEFLGD IL  +++ +++N F S 
Sbjct: 181 EIKDHVIRARVFMHKSLVNDKVYLNESDIIKSNNERLEFLGDSILNTVMTMIIYNKFPSL 240

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+     LV  ET  + +   +L   ++ +     D+    +   AD+ E+ I  L
Sbjct: 241 NEGNLTELRKKLVKNETLREWSELYELPKQLKSNLSPDVDL--STSKTSADIFEAYIGGL 298

Query: 127 YLDGGIEVAGTFVDK-----------YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
             D                         K           D   + + ++   +     +
Sbjct: 299 MEDDPKTNLVKIRKWLKKLAKPKIEEAMKTSIQLEPTNNLDMNAKRKLYSLIGYAALKLH 358

Query: 176 KVTFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
             T +   + +P   V      G     G   + + A   AA +VL++E + 
Sbjct: 359 YHTVQRPTNENPVTIVQCRTGDGTILGVGKARNIKLAGVKAAEDVLRKEDVI 410


>gi|56752450|ref|YP_173151.1| ribonuclease III [Synechococcus elongatus PCC 6301]
 gi|81300454|ref|YP_400662.1| RNAse III [Synechococcus elongatus PCC 7942]
 gi|56687409|dbj|BAD80631.1| ribonuclease III [Synechococcus elongatus PCC 6301]
 gi|81169335|gb|ABB57675.1| RNAse III [Synechococcus elongatus PCC 7942]
          Length = 247

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 11/212 (5%)

Query: 5   RYSTLEKRIGYAFANRSL----LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +   L  ++    A   L    +++ALTH S +    + Y+RLEFLGD +L L I+  L 
Sbjct: 19  QLQRLLTKLPLTIA-PELDWQQIDRALTHPSAAE---DHYDRLEFLGDAVLRLAIADFLD 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR--VSSDLRKDVCSFMTSIQADV 118
            H+     G+ S   + L S  T + +A   +L   +R   ++   +       +   + 
Sbjct: 75  RHYPDLSVGDCSALRSELGSDRTLAAIAASYNLERVLRVGKTAANDRAGQQSRLAEAFEA 134

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +   +     +     +        +  A+     R + K  LQEW   ++   PEY+  
Sbjct: 135 LLGALYLSQRNLDPIRSWLDPHLQQRATAMLQDPTRGNYKAALQEWTLQRYQELPEYRTE 194

Query: 179 FRSGPDHDPR-FTVVVEISGLAPAQGMDCSKR 209
            RS    DP  F   V   G     G+  S +
Sbjct: 195 QRSDACGDPAAFAAEVWFRGEKLGSGVGRSIK 226


>gi|159481710|ref|XP_001698921.1| dicer-like protein [Chlamydomonas reinhardtii]
 gi|158273413|gb|EDO99203.1| dicer-like protein [Chlamydomonas reinhardtii]
          Length = 5684

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 4/97 (4%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             LE  +GY F N  L  +ALTH S   +      Y+RLEFLGD +LGL++S   +     
Sbjct: 3492 ELEALLGYRFRNPDLCVQALTHVSHPRAAGCGGGYQRLEFLGDAVLGLVVS--FWVFSAG 3549

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
                 +S R   LVS    ++ A  L L   +R  S 
Sbjct: 3550 GSAEAMSTRRRDLVSNGPLAEAAARLGLQRHLRAGSG 3586


>gi|113953295|ref|YP_729437.1| ribonuclease III [Synechococcus sp. CC9311]
 gi|113880646|gb|ABI45604.1| ribonuclease III [Synechococcus sp. CC9311]
          Length = 254

 Score = 67.3 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 7/194 (3%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
             L +ALTH+S        +E+LEFLGD +L L  S  + +       GE S     LVS
Sbjct: 35  EHLNEALTHTS--TGLARHHEQLEFLGDAVLRLAASDFIESEHPQMPVGERSALRAQLVS 92

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
               +++   + +   ++V S    D  +  T         + A   + G +     ++ 
Sbjct: 93  DRWLAELGTTIGIEVLLQVGSKASGDQAARSTLRAEHCEALIGAIYRISGKVSPVQCWLT 152

Query: 141 KYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISG 197
            YW++ +        R ++K+ LQEW  A+    P Y+    +    DP RF   V I  
Sbjct: 153 PYWRETSRDVLADPHRGNSKSALQEWTQAQGLGLPIYECHEVNKRHGDPRRFHCQVFIQD 212

Query: 198 LA--PAQGMDCSKR 209
                A+    S+R
Sbjct: 213 QNSPTAEAWGGSRR 226


>gi|296417647|ref|XP_002838464.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634403|emb|CAZ82655.1| unnamed protein product [Tuber melanosporum]
          Length = 398

 Score = 66.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 68/252 (26%), Gaps = 33/252 (13%)

Query: 3   ALRYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           + + + L  R+          L +AL H S   +   +   L  LG  ++    +  L  
Sbjct: 110 SAKLAALHARLSLHPKFPVQTLARALIHPSADPNPLFNNRSLTTLGSALINYYATEWLLC 169

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDL---------------------------- 93
            +       L    ++ V A+  + + RE  +                            
Sbjct: 170 TYPRLPAEVLRAALSAYVGAKALASMGREWGVESAFEPRADVDAGLLQFKRLPPGPEVEA 229

Query: 94  -ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                      R           A  V S  A +YL  G+     F  ++   R L   K
Sbjct: 230 SGYKWWQEKGERWTNGVPEEEATASFVTSTFAGVYLHEGVGPVKQFFRQHVLSRKLDIDK 289

Query: 153 --FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKR 209
                    EL      +    P  +    +G     P F V V        +G   S  
Sbjct: 290 LFNFVQPTRELSSLCSREGFEPPIARHISETGRRSIAPVFVVGVYSGLEKIGEGHGGSMN 349

Query: 210 AAEQVAAAEVLK 221
            A   AA   LK
Sbjct: 350 EARIRAAVNALK 361


>gi|289804515|ref|ZP_06535144.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 187

 Score = 66.5 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 3/171 (1%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
           +EFLGD IL  +I+  L++ F    EG++S    +LV   T +++ARE DL   +R+   
Sbjct: 1   MEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPG 60

Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTE 160
             K       SI AD VE+LI  ++LD  I+            +   +  G  ++D KT 
Sbjct: 61  ELKSGGFRRESILADTVEALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTR 120

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
           LQE+   +    P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 LQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 171


>gi|213158242|ref|YP_002320293.1| ribonuclease III [Acinetobacter baumannii AB0057]
 gi|215482645|ref|YP_002324839.1| Ribonuclease 3 [Acinetobacter baumannii AB307-0294]
 gi|213057402|gb|ACJ42304.1| ribonuclease III [Acinetobacter baumannii AB0057]
 gi|213986369|gb|ACJ56668.1| Ribonuclease 3 [Acinetobacter baumannii AB307-0294]
 gi|322509030|gb|ADX04484.1| rnc [Acinetobacter baumannii 1656-2]
 gi|323519012|gb|ADX93393.1| ribonuclease III [Acinetobacter baumannii TCDC-AB0715]
          Length = 155

 Score = 66.5 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 3/153 (1%)

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+YLD    
Sbjct: 1   MRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSSDL 60

Query: 134 V---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
                            ++     +D K+ LQE+  A+    P Y+V    G      F 
Sbjct: 61  NLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFK 120

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   + GL+   G   S+R AEQ AAAE+LK  
Sbjct: 121 VECLVDGLSKIHGEGSSRRFAEQAAAAEILKLL 153


>gi|254411633|ref|ZP_05025409.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420]
 gi|196181355|gb|EDX76343.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420]
          Length = 278

 Score = 66.5 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 86/209 (41%), Gaps = 8/209 (3%)

Query: 5   RYSTLEKRIGY---AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   L +++G    A      L+ ALTH S+S     +Y++LEF+GD ++ +  S LLF 
Sbjct: 53  QLQKLVQKLGLLDNAPVQWDKLDLALTHPSMSRDV--NYDQLEFVGDAVVRMAASELLFE 110

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--LRKDVCSFMTSIQADVV 119
            + +A  G+ +   + LVS    +Q+A+E  L  ++ ++              +   + +
Sbjct: 111 TYPNASVGDFAAIRSVLVSDRILAQLAQEYGLERYLLLAPSAAADPRGEMSRLADAFEAI 170

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
              +        +               +     R++ K  LQEW  A +   PEY++T 
Sbjct: 171 VGALYLSTHTLELIRPWLDPHFQRLTEDILKDPARQNYKDALQEWTQAHYKSLPEYRLTE 230

Query: 180 RS-GPDHDPRFTVVVEISGLAPAQGMDCS 207
            +     + RFT  V   G    +G   S
Sbjct: 231 TNPIEADENRFTAQVWFKGQQLGEGQGRS 259


>gi|40063138|gb|AAR37985.1| ribonuclease III [uncultured marine bacterium 561]
          Length = 149

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 94  ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGK 152
              + +    RK       SI AD VE++  A+ LD G + A   +  ++     +    
Sbjct: 15  GECLTLGVGERKSGGRHRASILADTVEAIAGAMLLDAGYDNAAPVILHWFADALGELQVD 74

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAA 211
             +D+KT LQEW  A+    P Y +    GPDH   F VV  I G   A  G   S+R A
Sbjct: 75  GDKDSKTLLQEWLQARNLPLPSYDLVSVEGPDHAQEFEVVCLIKGQKNAFSGRGSSRRNA 134

Query: 212 EQVAAAEVLKREG 224
           EQ AA+  +   G
Sbjct: 135 EQQAASVAIGELG 147


>gi|307179783|gb|EFN67973.1| Double-stranded RNA-specific editase Adar [Camponotus floridanus]
          Length = 1657

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 65/182 (35%), Gaps = 1/182 (0%)

Query: 42   RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
            +L FL + +    I         +     + V +N +V     + V  E  +  + ++  
Sbjct: 956  KLRFLINHMDLRTIVKCFNRGLFADDPDIICVGYNEIVRRGLHNTVYVEAIVNKYKKLYE 1015

Query: 102  DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
                 + +   ++  +        +      +       +   +    + K  ++ + + 
Sbjct: 1016 CNPPMISANGNTLLDNSQSGHTTLMGQGNSPKSILKRTSEVDLEDVSSAKKRHKNPQPKN 1075

Query: 162  QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               A  +      YKV  ++GP H P FT+ V+I G    +G   +K+ A+  AA   L+
Sbjct: 1076 AVCALNELKTGATYKVVGQTGPTHAPIFTIAVQIDGQTY-EGKGRTKKMAKHAAAELALR 1134

Query: 222  RE 223
              
Sbjct: 1135 NI 1136


>gi|218508317|ref|ZP_03506195.1| ribonuclease III [Rhizobium etli Brasil 5]
          Length = 75

 Score = 66.5 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 34/51 (66%)

Query: 5  RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55
            + LE  IG+ FA +  L++ALTH+S       +YERLEFLGDR+LGL I
Sbjct: 11 DRAKLENLIGHDFAEKERLDRALTHASARTEKGSNYERLEFLGDRVLGLCI 61


>gi|309362482|emb|CAP27969.2| hypothetical protein CBG_08071 [Caenorhabditis briggsae AF16]
          Length = 693

 Score = 66.1 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 3/101 (2%)

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
                      G    +             K +  +             +   Y +   S
Sbjct: 30  LSTKVHPQHWCGQHKFEADSPTNFYDYTTSKNKNKSAMCRVAEIARFNKLRHFYDLQDES 89

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GP H   FTV + ++     +G   S + A+Q AA   L++
Sbjct: 90  GPAHKKLFTVRLVLNNEETFEGSGTSIKRAQQAAAETALEK 130



 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  + +  + L +   AK    P +++   +G      F +  +  G    +G   
Sbjct: 389 MDPHYGHQINPVSRLIQVTQAKSRHHPTFELLSENGVSKYKEFVIQAK-YGEIVCEGKGP 447

Query: 207 SKRAAEQVAAAEVLKREG 224
           +KR A++ AA E+L   G
Sbjct: 448 NKRLAKRAAAEEMLDLIG 465



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPA 201
            R  ++  + + +             +   ++     GP HD  + V       +    A
Sbjct: 265 DRRFENTNYTQKSVISDIHEKAHLLKLNVVFETLKEEGPPHDRVYVVRCAFVSSNKEVKA 324

Query: 202 Q--GMDCSKRAAEQVAAAEVLKR 222
           +  G    K+ A+Q A  ++LK 
Sbjct: 325 EAIGKGKKKKVAQQEACTQLLKN 347


>gi|321463701|gb|EFX74715.1| hypothetical protein DAPPUDRAFT_108624 [Daphnia pulex]
          Length = 257

 Score = 66.1 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 39/124 (31%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LE  + Y F N+  L +AL H S   +  ES ++ EFLGD+ LG +          +
Sbjct: 97  LEKLETILKYKFTNKLFLLQALRHPSAVSALDESNDKFEFLGDKQLGNINVQHKLISRAT 156

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
                   R + +VS         ++   +             +           +  A 
Sbjct: 157 FLWPPTLSRADPVVSDSLHWPHIPQVANPASWPPIPQRANPALTTSLYWPPLPQRANPAV 216

Query: 126 LYLD 129
               
Sbjct: 217 TMHW 220


>gi|219558950|ref|ZP_03538026.1| ribonuclease III [Mycobacterium tuberculosis T17]
 gi|289571114|ref|ZP_06451341.1| ribonuclease III rnc [Mycobacterium tuberculosis T17]
 gi|289544868|gb|EFD48516.1| ribonuclease III rnc [Mycobacterium tuberculosis T17]
          Length = 139

 Score = 66.1 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 69/138 (50%), Gaps = 7/138 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M   R   L   +G    +  LL  ALTH S ++      + ERLEFLGD +LGL I+  
Sbjct: 1   MIRSR-QPLLDALGVDLPD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDA 58

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQ 115
           LF+      EG+L+    S+V+ +  + VAR L    L   + +         +  +SI 
Sbjct: 59  LFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSIL 118

Query: 116 ADVVESLIAALYLDGGIE 133
           AD +ESL+ A+YL  G+E
Sbjct: 119 ADGMESLLGAIYLQHGME 136


>gi|262278196|ref|ZP_06055981.1| ribonuclease III [Acinetobacter calcoaceticus RUH2202]
 gi|262258547|gb|EEY77280.1| ribonuclease III [Acinetobacter calcoaceticus RUH2202]
          Length = 155

 Score = 66.1 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 3/153 (1%)

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+Y+D G  
Sbjct: 1   MRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYIDSGDL 60

Query: 134 V---AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
                            ++     +D K+ LQE+  A+    P Y+V    G      F 
Sbjct: 61  NLLTDIVLKWYVPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFK 120

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   I GL+   G   S+R AEQ AAAE+LK  
Sbjct: 121 VECLIDGLSKIYGEGSSRRFAEQAAAAEILKLL 153


>gi|268576457|ref|XP_002643208.1| Hypothetical protein CBG08071 [Caenorhabditis briggsae]
          Length = 663

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 3/96 (3%)

Query: 130 GGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
                 G    +             K +  +             +   Y +   SGP H 
Sbjct: 3   HPQHWCGQHKFEADSPTNFYDYTTSKNKNKSAMCRVAEIARFNKLRHFYDLQDESGPAHK 62

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             FTV + ++     +G   S + A+Q AA   L++
Sbjct: 63  KLFTVRLVLNNEETFEGSGTSIKRAQQAAAETALEK 98



 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  + +  + L +   AK    P +++   +G      F +  +  G    +G   
Sbjct: 364 MDPHYGHQINPVSRLIQVTQAKSRHHPTFELLSENGVSKYKEFVIQAK-YGEIVCEGKGP 422

Query: 207 SKRAAEQVAAAEVLKREG 224
           +KR A++ AA E+L   G
Sbjct: 423 NKRLAKRAAAEEMLDLIG 440



 Score = 46.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQ--GMDCS 207
            R+ +             +   ++     GP HD  + V       +    A+  G    
Sbjct: 248 HRQKSVISDIHEKAHLLKLNVVFETLKEEGPPHDRVYVVRCAFVSSNKEVKAEAIGKGKK 307

Query: 208 KRAAEQVAAAEVLKR 222
           K+ A+Q A  ++LK 
Sbjct: 308 KKVAQQEACTQLLKN 322


>gi|224613121|dbj|BAH24228.1| dsRNA-specific ribonuclease RNaseIII [Paulownia witches'-broom
           phytoplasma]
          Length = 157

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +YK+    GP H  +F   V +       G   +K+AAEQ AA + L +
Sbjct: 90  QYKIVQEQGPAHSKKFVAEVYLEKNLLGTGEGSTKKAAEQKAAHQALSK 138


>gi|328951087|ref|YP_004368422.1| double-stranded RNA binding domain protein [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451411|gb|AEB12312.1| double-stranded RNA binding domain protein [Marinithermus
           hydrothermalis DSM 14884]
          Length = 158

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             T  +GP+HDP F   V ++G   A G   +KR AE++AA    +   
Sbjct: 22  FDTRGTGPEHDPLFISDVMVNGTVVATGQGRTKREAERIAAELAYEALK 70


>gi|325284065|ref|YP_004256606.1| double-stranded RNA binding domain-containing protein [Deinococcus
           proteolyticus MRP]
 gi|324315874|gb|ADY26989.1| double-stranded RNA binding domain protein [Deinococcus
           proteolyticus MRP]
          Length = 169

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                      SGP H PRF   V   G    QG   S+R AE+ AA + L+  
Sbjct: 16  QGLSPEFRVDGSGPAHAPRFVAEVWCDGQRLGQGEGRSRREAERGAAVQALEEL 69


>gi|149732822|ref|XP_001500801.1| PREDICTED: ribonuclease type III, nuclear isoform 3 [Equus caballus]
          Length = 1192

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 2/104 (1%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
            F    EG L++  +SLV+  T ++VA EL +  +          
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQGWCIYLLHNCDC 1172



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 926  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 986  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1045

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1046 LHPLQLQEPNTDRQLIETSPV 1066



 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 842 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 872


>gi|312213183|emb|CBX93265.1| similar to dicer-like protein 2 [Leptosphaeria maculans]
          Length = 1393

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFD 64
             STLE+ IG+ F+ + LL  A+TH+S         Y+R EFLGD +L  +I+  L+ H  
Sbjct: 1089 LSTLERLIGHTFSKKFLLLDAITHASYLGPNVHCDYQRTEFLGDAVLDFIITKRLYAHTP 1148

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
              +   +     ++V+A   +    E  +   +  
Sbjct: 1149 PLEHQTMHAIRTAMVNASFLAFRMFETTIDEHLTN 1183



 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +  LL KALT  S S    E Y++LEF GD IL  + S  L        E  L+ +  ++
Sbjct: 922 DLPLLVKALT--SSSTGEVEDYQQLEFYGDCILKFISSLHLMAANPKEPESFLTQKKGNI 979

Query: 79  VSAETCSQVARELDLASFIR 98
           VS  + ++ +    L  ++ 
Sbjct: 980 VSNGSLTRASLSAGLDRYVI 999


>gi|307150902|ref|YP_003886286.1| ribonuclease III [Cyanothece sp. PCC 7822]
 gi|306981130|gb|ADN13011.1| ribonuclease III [Cyanothece sp. PCC 7822]
          Length = 235

 Score = 66.1 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 8/208 (3%)

Query: 6   YSTLEKRIGYAFA---NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
             TL +++G       N SLL+ AL H S S     +Y++LEF+GD ++ L  + +L   
Sbjct: 12  LKTLVQKLGLPDTAAVNWSLLDLALIHPSFSREV--NYQQLEFVGDAVVRLAAAEVLLET 69

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  A  GE +   + +VS  T ++ A    L  ++  S     D    ++ +       L
Sbjct: 70  YPDALVGEFAALRSMMVSDRTLAEFADVYGLERYLLTSERSSTDEAGRVSRLADGFEALL 129

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            A       +++   ++D+  + +   ++    R + K  LQEW  A + + PEY+V   
Sbjct: 130 GALYLSTHNMKLIRPWLDELLQNKAAEIRLDPARLNYKDALQEWTQAHYKLLPEYRVQEV 189

Query: 181 SGPDH-DPRFTVVVEISGLAPAQGMDCS 207
              ++ + RF   V ++      G   +
Sbjct: 190 LLNNNKEERFLAEVWLNDQKLGAGTGRT 217


>gi|195395490|ref|XP_002056369.1| GJ10909 [Drosophila virilis]
 gi|194143078|gb|EDW59481.1| GJ10909 [Drosophila virilis]
          Length = 851

 Score = 65.7 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAA 211
             +     L E         P+Y +   SGP H   F   VEI+G          SK+ A
Sbjct: 774 HDKHPVCVLNELTSKNKWTPPQYTLRDDSGPSHSRMFRFSVEINGQTYTPAQGCNSKKEA 833

Query: 212 EQVAAAEVLKREGIW 226
           +  AA   L+  GI 
Sbjct: 834 KLNAAKLCLRALGIL 848


>gi|301107618|ref|XP_002902891.1| ribonuclease 3, putative [Phytophthora infestans T30-4]
 gi|262098009|gb|EEY56061.1| ribonuclease 3, putative [Phytophthora infestans T30-4]
          Length = 312

 Score = 65.3 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 9/112 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLIS 56
              L++RIG  F + +LL+ ALTH     +          + S   LEFLGD +LG   +
Sbjct: 123 LEKLQERIGVKFQDVTLLQSALTHHGCLPTNPVPEDVPVVRLSNRSLEFLGDSLLGAAAA 182

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
             ++      +EG+LS   ++LV+ +T S+++ +L +   +       +   
Sbjct: 183 GYVYQMLPRHQEGQLSRAKSALVNNDTLSKISADLGITDLLLWPPGFNEARG 234


>gi|212537957|ref|XP_002149134.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224]
 gi|210068876|gb|EEA22967.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224]
          Length = 296

 Score = 65.3 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 76/223 (34%), Gaps = 17/223 (7%)

Query: 17  FANRSLLEKALTHSS-----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
             + SL     TH            +++Y+RLE LGD  + ++ + L+++HF     G +
Sbjct: 42  IHDASLERAVFTHPGTPVHIAPEGMEQNYDRLEVLGDAYVEVIATRLIWDHFKDMPAGRM 101

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAALYLDG 130
           S     LV  ET +  A +      + VS+   +         I+ DV E+ +AA+ L  
Sbjct: 102 SQVREDLVKNETLAGFASQYGFDKRVSVSAPEEQKAQPKRWLKIRGDVFEAYVAAVVLSN 161

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD------ 184
                        +    +    +        +   AK  ++   K+ +           
Sbjct: 162 PDHGFDIVEQWLRELWLPRLSHVQPVQTVLRHKEQLAKRVMSKGIKLRYVEEQPAKQLDG 221

Query: 185 HDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               + + V +            G   +K  A   AA + L+ 
Sbjct: 222 GMQTYYIGVYLTGWGWHDQHLGSGSGLNKAIAGDEAANKALQN 264


>gi|212537955|ref|XP_002149133.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224]
 gi|210068875|gb|EEA22966.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224]
          Length = 374

 Score = 65.3 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 76/223 (34%), Gaps = 17/223 (7%)

Query: 17  FANRSLLEKALTHSS-----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
             + SL     TH            +++Y+RLE LGD  + ++ + L+++HF     G +
Sbjct: 120 IHDASLERAVFTHPGTPVHIAPEGMEQNYDRLEVLGDAYVEVIATRLIWDHFKDMPAGRM 179

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAALYLDG 130
           S     LV  ET +  A +      + VS+   +         I+ DV E+ +AA+ L  
Sbjct: 180 SQVREDLVKNETLAGFASQYGFDKRVSVSAPEEQKAQPKRWLKIRGDVFEAYVAAVVLSN 239

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD------ 184
                        +    +    +        +   AK  ++   K+ +           
Sbjct: 240 PDHGFDIVEQWLRELWLPRLSHVQPVQTVLRHKEQLAKRVMSKGIKLRYVEEQPAKQLDG 299

Query: 185 HDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               + + V +            G   +K  A   AA + L+ 
Sbjct: 300 GMQTYYIGVYLTGWGWHDQHLGSGSGLNKAIAGDEAANKALQN 342


>gi|32450506|gb|AAH54003.1| RNASEN protein [Homo sapiens]
          Length = 1192

 Score = 64.9 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 2/104 (1%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
            F    EG L++  +SLV+  T ++VA EL +  +          
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQVWSIYLLSNCDC 1172



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 926  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 986  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1045

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1046 LHPLQLQEPNTDRQLIETSPV 1066



 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 842 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 872


>gi|114600831|ref|XP_001156889.1| PREDICTED: ribonuclease III, nuclear isoform 1 [Pan troglodytes]
          Length = 1189

 Score = 64.9 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 2/104 (1%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
            F    EG L++  +SLV+  T ++VA EL +  +          
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQVWSIYLLSNCDC 1172



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 926  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 986  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1045

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1046 LHPLQLQEPNTDRQLIETSPV 1066



 Score = 43.4 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 842 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 872


>gi|15807272|ref|NP_296002.1| hypothetical protein DR_2281 [Deinococcus radiodurans R1]
 gi|6460094|gb|AAF11833.1|AE002060_12 hypothetical protein DR_2281 [Deinococcus radiodurans R1]
          Length = 164

 Score = 64.6 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 21/45 (46%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP H+  F V V  SG   A     +K+ AE++AA   L+  
Sbjct: 49  EAHGPAHERTFHVKVWSSGQVIATAEGRTKKDAERLAAELALREL 93


>gi|226286856|gb|EEH42369.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1450

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY F  +  L +A TH S +     SY+RLEFLGD IL  +I   +FN   +
Sbjct: 1128 FRDIESLVGYIFNKKVFLAQAFTHPS-NPGSTMSYQRLEFLGDSILDHIIVDHIFNSPRN 1186

Query: 66   AKEGELSVRFNSLVSAETCSQVAREL 91
             +  ++ +   SL +A+  + +   +
Sbjct: 1187 FQHVDMHLMRASLANADFLAFLCIGM 1212



 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 2/99 (2%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F + +L+  AL           +Y+R+EFLGD IL    S  L        EG LS   +
Sbjct: 957  FTDLNLVITALCAP--DAREATNYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNAKD 1014

Query: 77   SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
             +VS +  S  A E  L  FI +                
Sbjct: 1015 EVVSNKRLSYAAIETGLDKFIFMDIFTGVKWRPRYNKAH 1053


>gi|225684610|gb|EEH22894.1| dicer [Paracoccidioides brasiliensis Pb03]
          Length = 1415

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY F  +  L +A TH S +     SY+RLEFLGD IL  +I   +FN   +
Sbjct: 1128 FRDIESLVGYIFNKKVFLAQAFTHPS-NPGSTMSYQRLEFLGDSILDHIIVDHIFNSPRN 1186

Query: 66   AKEGELSVRFNSLVSAETCSQVAREL 91
             +  ++ +   SL +A+  + +   +
Sbjct: 1187 FQHVDMHLMRASLANADFLAFLCIGM 1212



 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 2/99 (2%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F + +L+  AL           +Y+R+EFLGD IL    S  L        EG LS   +
Sbjct: 957  FTDLNLVITALCAP--DAREATNYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNAKD 1014

Query: 77   SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
             +VS +  S  A E  L  FI +                
Sbjct: 1015 EVVSNKRLSYAAIETGLDKFIFMDIFTGVKWRPRYNKAH 1053


>gi|124486133|ref|YP_001030749.1| hypothetical protein Mlab_1315 [Methanocorpusculum labreanum Z]
 gi|124363674|gb|ABN07482.1| ribonuclease III [Methanocorpusculum labreanum Z]
          Length = 145

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
           + YS L  +IGY FAN  LL  ALT ++ +   +    E+ + L  LGD +L L++   L
Sbjct: 1   MNYSDLYAKIGYTFANVDLLLHALTRTAYARENELSMSETMDSLAVLGDAVLDLIVIRRL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                   +GE++ +   LV+     ++A ++ L  ++R      +        + A+  
Sbjct: 61  I-EEGEFDKGEITRKKIDLVNMTVVRKLAEDIGLPEYMRWGKGELRMQIWTSGRVSAECF 119

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ 145
           E+L+ A YLDGG+E +   +D  W  
Sbjct: 120 EALMGAAYLDGGVEASSAILDHVWMP 145


>gi|326428784|gb|EGD74354.1| hypothetical protein PTSG_06363 [Salpingoeca sp. ATCC 50818]
          Length = 333

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 61/229 (26%), Gaps = 29/229 (12%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L  R G  F +  LL +ALTH +          RL  LG+ +L   +   L+ +F +
Sbjct: 53  IRALAARTGEKFKDEKLLLQALTHRTY--DGYAHNGRLSLLGETVLSQSVVEHLYFNFPN 110

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLAS---FIRVSSDLRKDVCSFMTSIQADVVE-- 120
                +    +  +SA+    + R+L       +                  +       
Sbjct: 111 LYSTAIKSVRDRFLSADVLGPIGRKLGFQDALLYKHAEEGEAVKAAKPFEHNKRAKYHVD 170

Query: 121 ---------------------SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT 159
                                +L               FV    +   L         + 
Sbjct: 171 PVPPQKIPASAVAAAFKAFVGALYVDQGALQAKRYVKDFVVHTLENSDLSEFIKLEHPRR 230

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPD-HDPRFTVVVEISGLAPAQGMDCS 207
            LQ    A       Y+V   SG   H P F V V       A G   S
Sbjct: 231 VLQRLHAASGREPLAYRVIEESGRATHMPTFLVGVFAGNQKLATGAGYS 279


>gi|332024427|gb|EGI64625.1| Double-stranded RNA-specific editase Adar [Acromyrmex echinatior]
          Length = 673

 Score = 64.6 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
           K  ++ + +    A  +      Y V  ++GP H P FT+ V+I G    +G   +K+ A
Sbjct: 86  KRHKNPQPKNAVCALNELKTGATYNVVGQTGPTHAPIFTIAVQIDGQTY-EGKGRTKKMA 144

Query: 212 EQVAAAEVLKRE 223
           +  AA   L+  
Sbjct: 145 KHAAAELALRNI 156


>gi|39942154|ref|XP_360614.1| hypothetical protein MGG_03157 [Magnaporthe oryzae 70-15]
 gi|145015863|gb|EDK00353.1| hypothetical protein MGG_03157 [Magnaporthe oryzae 70-15]
          Length = 402

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 82/267 (30%), Gaps = 55/267 (20%)

Query: 16  AFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
              + S+ + A THSS+  +     +SY+RLE+LGD  L L  +  ++  F +   G  S
Sbjct: 122 EIKDPSIEKAAFTHSSVIGNKLSGVQSYDRLEWLGDAYLELFATCFIYQTFPALSHGASS 181

Query: 73  VRFNSLVSAETCSQVARELD-------LASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
                L+  ++ +Q  +             F  ++   +  +    T I  D+ E+ + A
Sbjct: 182 QLREVLIRNDSLAQWTQAYGLEKRARLPPEFAGLNHSGQAMMQKKRTKIYGDLFEAYVGA 241

Query: 126 LYLDGGIEVAGTFVDKYWKQRALK------------------------------------ 149
           +     +              A +                                    
Sbjct: 242 IIASDPVHGTDRAAVWLKSLWAPRLKREIHAEEKRQRCLVASTTSLESDPIQGPTDNYAV 301

Query: 150 -SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD---PRFTVVVEIS-----GLAP 200
            + K  R  K  L      K        +      D +   P F V V +      GL  
Sbjct: 302 AAPKPNRSPKEALAAMIVVKGVKLSYVDLPAPKKKDKNNNLPLFAVAVVLDGWGESGLQL 361

Query: 201 AQGMDCSKRAAEQVAAAEVLKREGIWT 227
             G+  +K  A   AA   +  + + T
Sbjct: 362 GMGVAKNKSEAGHAAAQRAMDNKKLIT 388


>gi|148277633|ref|NP_001091684.1| adenosine deaminase acting on RNA [Apis mellifera]
 gi|146260809|gb|ABQ14707.1| adenosine deaminase [Apis mellifera]
          Length = 620

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
           K  ++ + +    A  +      YKV  ++GP H P FT+ V+I G    +G   +K+ A
Sbjct: 27  KRNKNPQPKNAVCALNELKSGAVYKVVDQTGPTHAPIFTIAVQIDGQTY-EGKGRTKKMA 85

Query: 212 EQVAAAEVLKRE 223
           +  AA   L+  
Sbjct: 86  KHAAAELALRNI 97


>gi|257058554|ref|YP_003136442.1| ribonuclease III [Cyanothece sp. PCC 8802]
 gi|256588720|gb|ACU99606.1| ribonuclease III [Cyanothece sp. PCC 8802]
          Length = 323

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 5  RYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFN 61
          + S++E +IG  F N  LL   L H S +   +  ++  ERLE+LG+ IL L+I+  L+ 
Sbjct: 4  KSSSVEDKIGINFKNSELLFLCLIHPSYAQQINEPEKDNERLEYLGETILRLVITDYLYQ 63

Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94
          +       +LS   + L   E  + +   L L 
Sbjct: 64 NCPYLAVSKLSALRDKLEEGERLTTLWFNLGLG 96


>gi|218245517|ref|YP_002370888.1| ribonuclease III [Cyanothece sp. PCC 8801]
 gi|218165995|gb|ACK64732.1| ribonuclease III [Cyanothece sp. PCC 8801]
          Length = 323

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 5  RYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFN 61
          + S++E +IG  F N  LL   L H S +   +  ++  ERLE+LG+ IL L+I+  L+ 
Sbjct: 4  KSSSVEDKIGINFKNSELLFLCLIHPSYAQQINEPEKDNERLEYLGETILRLVITDYLYQ 63

Query: 62 HFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94
          +       +LS   + L   E  + +   L L 
Sbjct: 64 NCPYLAVSKLSALRDKLEEGERLTTLWFNLGLG 96


>gi|530452|emb|CAA83781.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC
          27343]
          Length = 84

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 4  LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFN 61
          +      ++      ++ + ++ALTH+S ++    + SY+RLEFLGD IL + +S  LF 
Sbjct: 1  MNIKNFFEKYNIKINDQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYVSKFLFF 60

Query: 62 HFDSAKEGELSVRFNSLVSA 81
          H+    EGEL+   +S V  
Sbjct: 61 HYSKLGEGELTRLRSSTVRE 80


>gi|269115408|gb|ACZ26274.1| dicer-1-like protein [Mayetiola destructor]
          Length = 227

 Score = 64.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 62/222 (27%), Gaps = 21/222 (9%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           Y  +EK++ Y F ++S + +A +H S  ++    +Y+ L+F+GD I+  L+   LF    
Sbjct: 8   YEQIEKKLNYTFRDKSFMLQAFSHESFTANDICPNYDSLDFVGDGIINYLLCRHLFREAG 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                     F        C      +             K               SL +
Sbjct: 68  GQFSANEIEFFT-NTLKSNCCFATVSIRHGIHNFFRLMDTKLNG------------SLAS 114

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            +      +            R           K+ + E +            T   G  
Sbjct: 115 FVKFVQKNQCQPINDVMINIMRRDIEFICETRPKSAIAELSGMDHEAYFSKPETIGPGKI 174

Query: 185 HDPRFTVVVEISGLAPAQGMDCSK--RAAEQVAAAEVLKREG 224
                 V V +           S+    A+  AA   L +  
Sbjct: 175 -----MVQVILPNYENQTFSSISRDPNLAKWGAAKSALLQLK 211


>gi|307205142|gb|EFN83585.1| Double-stranded RNA-specific editase Adar [Harpegnathos saltator]
          Length = 661

 Score = 64.2 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            ++ + +    A  +      YKV  ++GP H P FT+ V+I G    +G   +K+ A+ 
Sbjct: 70  HKNPQPKNAVCALNELKTGAIYKVVGQTGPTHAPIFTIAVQIDGQTY-EGKGRTKKMAKH 128

Query: 214 VAAAEVLKRE 223
            AA   L+  
Sbjct: 129 AAAELALRNI 138


>gi|321463655|gb|EFX74669.1| hypothetical protein DAPPUDRAFT_251524 [Daphnia pulex]
          Length = 244

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LE+ + Y F  ++LL +AL +S     ++  YERL  LGD  LG L + + F+    
Sbjct: 40  LEKLEEILNYEFRYKNLLLQALIYSRKIAVFRPCYERL-HLGDAFLGGLAAEMCFDALPF 98

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
                LS   + LV   +   +  +     F++      + +       Q        +A
Sbjct: 99  YPPSVLSELKSVLVCNNSLGVLVVKFKFHKFLKRLPREIQTLIDTFAKKQKANGHKFPSA 158

Query: 126 LY 127
            Y
Sbjct: 159 YY 160


>gi|254572848|ref|XP_002493533.1| RNAase III [Pichia pastoris GS115]
 gi|238033332|emb|CAY71354.1| RNAase III [Pichia pastoris GS115]
 gi|328354643|emb|CCA41040.1| ribonuclease III [Pichia pastoris CBS 7435]
          Length = 524

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 85/219 (38%), Gaps = 16/219 (7%)

Query: 18  ANRSLLEKALTHSSIS--------HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
            +  L  K  TH S           +   SYERLE+LGD +L L +++++   F ++ EG
Sbjct: 168 TDPVLRSKVFTHKSAVTQAEEDSIEAANSSYERLEYLGDAVLELAVTSIVMKEFPASSEG 227

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            LSV    +VS       ++       +       +        I AD+ E+ I ALY+ 
Sbjct: 228 HLSVCRQQIVSNSNLENYSKLYGFPEKLSSLMSKEET-DKNNGKIYADIFEAYIGALYVQ 286

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG------VTPEYKVTFRSGP 183
              ++           R +      +  K+ L + A  K         +    VT  +GP
Sbjct: 287 NNNDLTMIQEWLGKLARPVIEAMKMKRDKSYLNKSAKEKLYALIGSAKSAPKYVTLDNGP 346

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             D  + V VE+ G    +G+  S + A   AA   L+ 
Sbjct: 347 ARD-EWLVQVEMEGEIIGKGIGGSVKDARTRAAMAALEN 384


>gi|193627224|ref|XP_001952647.1| PREDICTED: hypothetical protein LOC100161769 [Acyrthosiphon pisum]
          Length = 732

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 32/72 (44%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   + L E+   +    P++     SGP H   F + V ++G+        +K+ A+  
Sbjct: 656 KHPVSLLNEFCAKRKWDIPKFNTLDESGPSHRKTFIMTVVVNGVQYCSSRCQTKKLAKME 715

Query: 215 AAAEVLKREGIW 226
           AA E LK  G+ 
Sbjct: 716 AAKECLKEIGLL 727


>gi|293446921|ref|ZP_06663343.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B088]
 gi|291323751|gb|EFE63179.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B088]
          Length = 182

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 3/169 (1%)

Query: 45  FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
           FLGD IL  +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+     
Sbjct: 1   FLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGEL 60

Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQ 162
           K       SI AD VE+LI  ++LD  I+            +   +  G  ++D KT LQ
Sbjct: 61  KSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQ 120

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
           E+   +    P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 EYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 169


>gi|309800534|ref|ZP_07694685.1| ribonuclease III [Streptococcus infantis SK1302]
 gi|308115845|gb|EFO53370.1| ribonuclease III [Streptococcus infantis SK1302]
          Length = 83

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 5/77 (6%)

Query: 1  MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
          M  L  S L+      F ++SLLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1  MKELE-SVLQDSFELVFTDKSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57 TLLFNHFDSAKEGELSV 73
            LF  +       L  
Sbjct: 60 EYLFKKYPKKTRRGLVK 76


>gi|260172508|ref|ZP_05758920.1| ribonuclease III [Bacteroides sp. D2]
          Length = 214

 Score = 63.8 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 3/112 (2%)

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFG 170
           +  +  E+ I A+YLD G E    F+++    R +   K  R   + K++L EW+     
Sbjct: 1   MYGNAFEAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKM 60

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                 +      D +P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 61  EVSFELIEQFLDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 112


>gi|544827|gb|AAB29618.1| E3L product [variola virus VAR, India-1967, Peptide, 190 aa]
          Length = 190

 Score = 63.4 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 31/128 (24%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      A  +  +I                                
Sbjct: 57  YSSDDIPPRWFMTTEADKPDAMTMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKNA 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
              T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 MPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 175 AKLAVDKL 182


>gi|255524266|ref|ZP_05391225.1| ribonuclease III [Clostridium carboxidivorans P7]
 gi|255512091|gb|EET88372.1| ribonuclease III [Clostridium carboxidivorans P7]
          Length = 96

 Score = 63.4 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 2  SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLL 59
              +  LE+++   F ++ LL+ ALTHSS ++     +  ERLEFLGD +L + IS  L
Sbjct: 10 KNDTFVELEQKLDVCFEDKELLKIALTHSSYANGKKNIKFNERLEFLGDSVLQISISEYL 69

Query: 60 FNHF 63
          F ++
Sbjct: 70 FLNY 73


>gi|154484153|ref|ZP_02026601.1| hypothetical protein EUBVEN_01864 [Eubacterium ventriosum ATCC
           27560]
 gi|149735195|gb|EDM51081.1| hypothetical protein EUBVEN_01864 [Eubacterium ventriosum ATCC
           27560]
          Length = 379

 Score = 63.4 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 88/280 (31%), Gaps = 61/280 (21%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILG--------------- 52
           +E++IGY F NR LL +A    S S     E+ E LEF+GD+ L                
Sbjct: 16  VERQIGYKFVNRDLLVQAFVRKSYSMENGGENNEVLEFIGDKALDLSVVKTLTDKYGHMI 75

Query: 53  ---LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
                        +    EG+L+   + LV  E  S    EL LA F+ +S    K+   
Sbjct: 76  SDEPDYEDEDDEFYCEYSEGKLTHLKSLLVRKEYLSARIDELKLAPFLIMSKGDLKNNID 135

Query: 110 FMTSIQADVVESLIAALYLD-----------------------------------GGIEV 134
             TS++ D+ E++I A+ LD                                      E 
Sbjct: 136 KNTSVKEDLFEAIIGAVTLDTLWDFDKIQDVVGVMLRPELILDADVTDDNYIKLIQDWES 195

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
                   +  +     +  R  K  L     +    +  YK T  + P  +       +
Sbjct: 196 KHYNDLPKFLYKERGRNESIRVGKQSLYWRYGSSTPESVYYKETCYTYPYGNEHLRYECK 255

Query: 195 I---SGLAPAQGMDCSKRAAEQVAAAEVLKREG----IWT 227
           +     L        SK  A +       K       +WT
Sbjct: 256 MKLSDDLPEFGAYGESKSDARRKVCECAYKFLEEEDLLWT 295



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/174 (9%), Positives = 46/174 (26%), Gaps = 6/174 (3%)

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
             +   L+      +   +  +        +  +     +        ++  +  C    
Sbjct: 199 NDLPKFLYKERGRNESIRVGKQSLYWRYGSSTPESVYYKETCYTYPYGNEHLRYECKMKL 258

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT-----ELQEWAHA 167
           S       +   +            +     +           +        +L+  A  
Sbjct: 259 SDDLPEFGAYGESKSDARRKVCECAYKFLEEEDLLWTIKDEIENPNKAESISQLEILARR 318

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220
            +   PEY+   +   + +P + V   I            SK+ A++ AA ++L
Sbjct: 319 GYFSMPEYEYIEQYDENGNPIWNVECHIEEEKYYFDAEASSKKVAKKQAAYDML 372


>gi|94272417|ref|ZP_01292119.1| Ribonuclease III [delta proteobacterium MLMS-1]
 gi|93450139|gb|EAT01469.1| Ribonuclease III [delta proteobacterium MLMS-1]
          Length = 156

 Score = 63.4 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 1/132 (0%)

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           V+ E  + +AR+L L  FIR+             SI A   E+L+ A+YLDGG E A   
Sbjct: 3   VNEEHLAGMARQLALGEFIRLGRGEEATGGRDKPSILAATFEALVGAVYLDGGYEPALAL 62

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS-GPDHDPRFTVVVEISG 197
           +   +          R        +    +              GPDHD RFTV VE+ G
Sbjct: 63  LRPLFAPWVANPPLPRISDSKSALQEVLQQRHGEGPVYYLENEEGPDHDKRFTVRVELQG 122

Query: 198 LAPAQGMDCSKR 209
               +G    K+
Sbjct: 123 KVLGRGRGRGKK 134


>gi|9627565|ref|NP_042088.1| double-strand RNA-binding protein [Variola virus]
 gi|465071|sp|P33863|VE03_VAR67 RecName: Full=Protein E3
 gi|297225|emb|CAA48985.1| E3L [Variola virus]
 gi|745160|prf||2015436AY E3L gene
          Length = 190

 Score = 63.4 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 32/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      A  +  +I                                
Sbjct: 57  YSSDDIPPRWFMTTEADKPDAMTMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKNA 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 175 AKLAVDKL 182


>gi|224613141|dbj|BAH24245.1| dsRNA-specific ribonuclease RNaseIII [Korean potato witches'-broom
           phytoplasma]
          Length = 163

 Score = 63.4 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 3/153 (1%)

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           ++ +    V  ++    A+E+ L ++I +    +K   +   SI +D  E+L  A+YLD 
Sbjct: 5   MTKKRAQAVCIDSLFIYAKEIKLKNYILLGKGEKKRYDNNY-SIISDAFEALFGAIYLDL 63

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           G                 K             +           YK+    G  H+  F 
Sbjct: 64  GFNQTQKIFHNIVLPYLKKVINIIDFKTK--LQELIQTNRHNINYKIVSEQGLAHEKEFI 121

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             V +      +GM  +K+A+EQ AA + L + 
Sbjct: 122 TEVYLEEQFLGRGMGKTKKASEQKAAQQALIKI 154


>gi|321454554|gb|EFX65720.1| hypothetical protein DAPPUDRAFT_117031 [Daphnia pulex]
          Length = 322

 Score = 63.4 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 78/217 (35%), Gaps = 25/217 (11%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLF 60
           +   + L ++IGY F N++LL +A+THS+ + +   S   E  E LGD  LG   +    
Sbjct: 67  SFSLTALPEKIGYKFRNKNLLGRAMTHSTANQTKCPSQDGENFEVLGDVALGNFFAMARV 126

Query: 61  NH----------FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           NH            +  +G+LS+  +++   +T + +        +     D  +     
Sbjct: 127 NHTVVLELLLDLNPNYNQGQLSLLKSAITCNDTFADLVIIPSAEGYRANEIDYPE----- 181

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
              I AD  E+LI AL +D   E              +     R      LQ        
Sbjct: 182 ---IYADAFEALIGALRIDCEREDRIIRRVVLNLMDDVIKKYTREVPICPLQRIRQTPLK 238

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           V    +     G      F V++++       G   S
Sbjct: 239 VNFRERPNLPDG-----SFHVLLDVQNKQYFHGSGPS 270


>gi|18640289|ref|NP_570445.1| CMLV055 [Camelpox virus]
 gi|18482965|gb|AAL73762.1|AF438165_52 putative dsRNA-binding PKR inhibitor [Camelpox virus M-96]
 gi|19717992|gb|AAG37517.1| CMP55L [Camelpox virus CMS]
          Length = 190

 Score = 63.4 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 32/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +       D +  +I                                
Sbjct: 57  YSSDDIPPRWFMTTEADKPDTDAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKNT 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 175 AKLAVDKL 182


>gi|320585938|gb|EFW98617.1| RNA helicase rnase [Grosmannia clavigera kw1407]
          Length = 2671

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLIST 57
            +TLE+ +GY F   SLL +A+TH S          ERLEF+GD +L  +I  
Sbjct: 1241 TTLEELLGYQFRRPSLLAEAMTHPSTPGIREGGCMERLEFIGDAVLDYVIVQ 1292



 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
            ++RSL+  A++    +    ++YE LEF+GD +L L+ +         A EG LS+  + 
Sbjct: 1073 SDRSLITTAISAP--AARLHDNYEVLEFIGDAVLKLMAAANCAAQNLDAPEGHLSLFKDR 1130

Query: 78   LVSAETCSQVARELDLASF 96
            LV+     + A E  L  F
Sbjct: 1131 LVANSRLCRAATEFGLDRF 1149


>gi|157088318|gb|ABV21735.1| dsRNA-dependent protein kinase [Paralichthys olivaceus]
          Length = 688

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+     GPDH   FT+   ++      G   +K+ A Q AA   L+  
Sbjct: 23  YEDVGADGPDHIKTFTIRAIVNNKVFPDGTGNNKKEARQNAAQNALRGL 71



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           + +Y +  R G  H+P+F   + I+      G   + + A+Q AA   
Sbjct: 229 SHDYVLEKRCGQAHNPQFFYKLVINNKEYPVGEGKTVKEAKQNAAQLA 276


>gi|145540581|ref|XP_001455980.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74834199|emb|CAI44479.1| Dicer-like ribonuclease with helicase and Rnase III domains
            [Paramecium tetraurelia]
 gi|124423789|emb|CAK88583.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1797

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 54/154 (35%), Gaps = 47/154 (30%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI-------------------------------- 32
              ++LE  IGY F ++S+L +A+TH S                                 
Sbjct: 1499 NLNSLENIIGYKFNDQSILIQAITHQSFLSVLDFYNYRKCKCNFVEFQNTKNILQISNLN 1558

Query: 33   ---------------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
                            +    SYERLEFLGD +L  ++   L   F+  K  +L+++   
Sbjct: 1559 QNDINESLLTQLNQQQNRIDMSYERLEFLGDSVLDSVVVEWLVKEFNKEKVEDLALKKQC 1618

Query: 78   LVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
            +V  +  + V     L  F+   +  +    +  
Sbjct: 1619 VVCNKALALVTLHYKLDQFLLHPTLHKVAHENHQ 1652



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 10   EKRIGYAFANR--SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            ++   Y+  +    LL K       +   Q +Y+ LEFLGD  L LL S  +F  F  A 
Sbjct: 1292 QRNFKYSIHDIDNELLHKCFQSQQFNQDDQTNYQVLEFLGDANLKLLSSIEVFVQFPFAN 1351

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
            E  L +    +VS E   + +      + I+ ++
Sbjct: 1352 EHLLHLERARIVSNENLRKFSIIHRFFNCIKCTN 1385


>gi|94486111|gb|ABF25216.1| double-stranded RNA binding protein [Variola virus]
 gi|94486314|gb|ABF25418.1| double-stranded RNA binding protein [Variola virus]
 gi|94486517|gb|ABF25620.1| double-stranded RNA binding protein [Variola virus]
 gi|94486719|gb|ABF25821.1| double-stranded RNA binding protein [Variola virus]
 gi|94487125|gb|ABF26225.1| double-stranded RNA binding protein [Variola virus]
 gi|94490151|gb|ABF29236.1| double-stranded RNA binding protein [Variola virus]
 gi|109724086|gb|ABG43212.1| double-stranded RNA binding protein [Variola virus]
 gi|109725104|gb|ABG44225.1| double-stranded RNA binding protein [Variola virus]
 gi|109725309|gb|ABG44429.1| double-stranded RNA binding protein [Variola virus]
 gi|109725512|gb|ABG44631.1| double-stranded RNA binding protein [Variola virus]
 gi|109725716|gb|ABG44834.1| double-stranded RNA binding protein [Variola virus]
 gi|109725919|gb|ABG45036.1| double-stranded RNA binding protein [Variola virus]
 gi|109726529|gb|ABG45643.1| double-stranded RNA binding protein [Variola virus]
          Length = 190

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 31/128 (24%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      A  +   I                                
Sbjct: 57  YSSDDIPPRWFMTTEADKPDAMAMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWKNA 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 175 AKLAVDKL 182


>gi|94488139|gb|ABF27234.1| double-stranded RNA binding protein [Variola virus]
 gi|94488339|gb|ABF27433.1| double-stranded RNA binding protein [Variola virus]
 gi|109726123|gb|ABG45239.1| double-stranded RNA binding protein [Variola virus]
          Length = 192

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 35/128 (27%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      A  +    A +      +        +      K     +
Sbjct: 57  YSSDDIPPRWFMTTEADKPDAMAMTMADAIINDVSREKSMREDHKSFDDVIPAKKIIDWK 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +A        + +             GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NANPVTIINEYCQITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 176

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 177 AKLAVDKL 184


>gi|13508284|ref|NP_110234.1| ribonuclease III [Mycoplasma pneumoniae M129]
 gi|2500551|sp|P75233|RNC_MYCPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|1673968|gb|AAB95945.1| ribonuclease III [Mycoplasma pneumoniae M129]
 gi|301633525|gb|ADK87079.1| ribonuclease III [Mycoplasma pneumoniae FH]
          Length = 282

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
           ++    K +     N    E A  HSS  +  ++   SY+RLEFLGD ++  +++  LF 
Sbjct: 17  KFVAFFKSLNIEPQNWQFYEDAFVHSSYVNENEDARASYDRLEFLGDALIDFIVAKKLFE 76

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
            + +  EG L+     +V  E  +++ +EL+  +FI++   +  
Sbjct: 77  LYPNYNEGMLTRTKIEIVKGENLNRIGKELNFGNFIKLGKGMPY 120


>gi|147906536|ref|NP_001091256.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Xenopus
           laevis]
 gi|121308150|emb|CAM07152.1| double stranded RNA activated protein kinase 1 [Xenopus laevis]
          Length = 578

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           + ++K    +GP HDPRFT  V ++G    +G D  K+ AE +AA   L    
Sbjct: 20  SYQFKKVEATGPSHDPRFTFQVFVNGEKLGEGQDKKKKGAECMAAKMALSTLK 72



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 18/61 (29%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +        +  R G  H P F     I      +    +K+ A++ AA   L   
Sbjct: 124 HELCQKHTLIVTFLDERHGQPHIPEFFCKAVIGKEEFPKAKGKNKKEAKRKAAHLALISL 183

Query: 224 G 224
            
Sbjct: 184 K 184


>gi|113195237|ref|YP_717367.1| double-stranded RNA binding protein [Taterapox virus]
 gi|90660513|gb|ABD97626.1| double-stranded RNA binding protein [Taterapox virus]
          Length = 190

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      AD +  +I                                
Sbjct: 57  YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKNA 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPIFYACVDIDGRVFDKADGKSKRDAKNNA 174

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 175 AKLAVDKL 182


>gi|321460745|gb|EFX71784.1| hypothetical protein DAPPUDRAFT_111332 [Daphnia pulex]
          Length = 134

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 2/97 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LEK +GY F N+  L+ ALTH++ +      +  +RLE LGD+ LG +I    +  + + 
Sbjct: 38  LEKILGYEFQNKDNLKLALTHTTSNPIKCPSKDSDRLETLGDKFLGAMIMVKYYKTYPTY 97

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
             GEL+   + +    T + +A ++ L   +  + + 
Sbjct: 98  GAGELANLTSMITCNGTFAVLAVKMGLHGHLNQNMNP 134


>gi|212291457|gb|ACJ23858.1| double-stranded RNA-dependent protein kinase [Oplegnathus
           fasciatus]
          Length = 704

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           Y      GPDH   FT  V ++G A   G+  +KR A+  AA   LK
Sbjct: 23  YNDLGCVGPDHIKTFTQRVVLNGKAYPDGVGKNKREAKHNAAKNALK 69



 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L      K   + ++    R GP H+PRF   + I+      G   S + A++ AA    
Sbjct: 223 LVNHYCQKTNGSHKFIEERRCGPPHNPRFFYKLVINDKDYPVGEGKSAKEAKKNAAQLAW 282

Query: 221 KRE 223
              
Sbjct: 283 SAL 285


>gi|149639721|ref|XP_001515387.1| PREDICTED: similar to Protein kinase, interferon-inducible double
           stranded RNA dependent activator [Ornithorhynchus
           anatinus]
          Length = 397

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
             + K  +  +     LQE A       PEY ++  SGP H   F +  ++       G 
Sbjct: 199 PDSCKQPQKPKSPINSLQELAMRCGWSLPEYTLSKESGPAHKKEFIMNCKLE-TYVETGT 257

Query: 205 DCSKRAAEQVAAAEVLKRE 223
             SK+ A++ AA ++L + 
Sbjct: 258 GASKKQAKESAAEKLLAKL 276


>gi|111184243|gb|ABH08163.1| HSPV060 [Horsepox virus]
          Length = 190

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      AD +  +I                                
Sbjct: 57  YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 175 AKLAVDKL 182


>gi|37551503|gb|AAQ93155.1| double-stranded RNA binding protein [Vaccinia virus]
          Length = 190

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      AD +  +I                                
Sbjct: 57  YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 175 AKLAVDKL 182


>gi|137621|sp|P21081|VE03_VACCC RecName: Full=Protein E3; AltName: Full=p25
 gi|335388|gb|AAA48040.1| putative E3L [Vaccinia virus Copenhagen]
          Length = 190

 Score = 63.0 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      AD +  +I                                
Sbjct: 57  YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 175 AKLAVDKL 182


>gi|9633838|ref|NP_051918.1| gp029L [Rabbit fibroma virus]
 gi|6578557|gb|AAF17911.1|AF170722_29 gp029L [Rabbit fibroma virus]
          Length = 116

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 34/103 (33%)

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D V +L     +  G  V       +      +     +          + +        
Sbjct: 2   DPVSALWYYDTMTFGDGVISETKPIFGDTIKYEKIVSWQTKNPCTVLNEYCQITSREWSI 61

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
              R+G  H+P FT VV +SG +       +K+ A + AA E 
Sbjct: 62  NVTRTGQSHNPTFTAVVTVSGYSFKSATGSNKKEARKNAAKEA 104


>gi|30519433|emb|CAD90608.1| F3L protein [Cowpox virus]
          Length = 190

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 34/128 (26%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      ADV+  +I                                
Sbjct: 57  YSSDDIPPRWFMTTEADKTDADVMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 175 AKLAVDKL 182


>gi|88900676|gb|ABD57588.1| VACV056 [Vaccinia virus]
          Length = 190

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 33/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      ADV+   I                                
Sbjct: 57  YSSDDIPPRWFMTTEADKPDADVMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 175 AKLAVDKL 182


>gi|2772689|gb|AAB96428.1| dsRNA dependent PK inhibitor [Vaccinia virus]
 gi|38348925|gb|AAR17901.1| double-stranded RNA binding protein [Vaccinia virus]
 gi|47088378|gb|AAT10448.1| double-stranded RNA binding protein [Vaccinia virus]
 gi|90819719|gb|ABD98529.1| VACV-DUKE-067 [Vaccinia virus]
 gi|160857941|emb|CAM58229.1| double-stranded RNA binding protein [Vaccinia virus Ankara]
          Length = 190

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 33/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      ADV+   I                                
Sbjct: 57  YSSDDIPPRWFMTTEADKPDADVMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 175 AKLAVDKL 182


>gi|290989569|ref|XP_002677410.1| hypothetical protein NAEGRDRAFT_48963 [Naegleria gruberi]
 gi|284091017|gb|EFC44666.1| hypothetical protein NAEGRDRAFT_48963 [Naegleria gruberi]
          Length = 1214

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 1/100 (1%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
                LE+ IGY F N       L H S+   +  +YE LEF+GD +L L +S  +F++F 
Sbjct: 1022 NAKELERIIGYKFKNILYAYYTLIHPSVDIGFNVNYETLEFVGDAVLDLYVSRTMFHNFY 1081

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
              +    + R ++ V      ++A++  +   + V  DL+
Sbjct: 1082 LDQSEMHTFR-SNFVRNTALEKIAKDFRIDQLLFVKKDLK 1120



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           N S L  A+TH + S +   +YER EF GD IL   +   +   F        +    + 
Sbjct: 853 NLSELRNAITHRT-SQNLDTNYERYEFFGDTILKYAVVLDIVLRFPFENMKFYNEEKTAK 911

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKD 106
           VS     ++A++L +  F   +     +
Sbjct: 912 VSNSNLRKLAQKLSIMDFFIETQYYHHN 939


>gi|145301789|gb|ABP52434.1| double-stranded RNA-binding protein [Vaccinia virus]
          Length = 189

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      AD +  +I                                
Sbjct: 56  YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 115

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 116 NPVTVINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 173

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 174 AKLAVDKL 181


>gi|156540328|ref|XP_001599266.1| PREDICTED: similar to adenosine deaminase, partial [Nasonia
           vitripennis]
          Length = 429

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           YKV  ++GP H P FT+ V+I G +  +G   +K+ A+  AA   L+  
Sbjct: 184 YKVVSQTGPTHAPIFTIAVQIDGQSY-EGKGRTKKMAKHAAAELALRNI 231


>gi|217077865|ref|YP_002335583.1| ribonuclease III [Thermosipho africanus TCF52B]
 gi|217037720|gb|ACJ76242.1| ribonuclease III [Thermosipho africanus TCF52B]
          Length = 159

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 62/154 (40%), Gaps = 1/154 (0%)

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           ++    ++ S +   ++ R++ L ++I +     K    +  SI ADVVE+L+AA+Y+D 
Sbjct: 1   MAQIKAAVASEDILYEIGRDIGLENYIFLGKGELKSGGKYKKSIIADVVEALVAAIYVDC 60

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
             ++       +   +      F      + +           +    + +    +  F 
Sbjct: 61  KKDLNVLENVFHDTFKRYIEIFFSGKRIFDYKTKLQEITQDRFKQLPVYDTVSQKNK-FI 119

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             + I G   ++    SK+ +E++AA    ++  
Sbjct: 120 TTLYIDGKIYSKAEGFSKKESEKLAAKIAYEKLK 153


>gi|77434241|gb|ABA82144.1| double-stranded RNA-binding protein [Vaccinia virus]
 gi|77434344|gb|ABA82147.1| double-stranded RNA-binding protein [Vaccinia virus]
          Length = 179

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      AD +  +I                                
Sbjct: 51  YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 110

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 111 NPVTIINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 168

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 169 AKLAVDKL 176


>gi|55140600|gb|AAV41839.1| putative double-stranded RNA binding protein [Cantagalo virus]
          Length = 190

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      AD +  +I                                
Sbjct: 57  YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NPVTIINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 175 AKLAVDKL 182


>gi|56713422|gb|AAW23462.1| double-stranded RNA-specific adenosine [Vaccinia virus]
 gi|56713706|gb|AAW23744.1| double-stranded RNA-specific adenosine [Vaccinia virus]
          Length = 190

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 33/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      ADV+   I                                
Sbjct: 57  YSSDDIPPRWFMTTEADKPDADVMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NPVTVINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 175 AKLAVDKL 182


>gi|225543243|ref|NP_001139363.1| dsRNA-activated protein kinase R [Oncorhynchus mykiss]
 gi|155573866|gb|ABU24345.1| dsRNA-activated protein kinase R [Oncorhynchus mykiss]
          Length = 758

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            +     +     +++     GPDH   FT+ V I G A   G+  +K+ A+Q AA   L
Sbjct: 11  FEYAQRQRQISDIKFEEVGTVGPDHLKTFTLRVVIKGHAYPNGVGKNKKEAKQNAAKHAL 70



 Score = 35.3 bits (79), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 1/75 (1%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           E      ++   +R         +    L  +            +  +SGP HDP+F   
Sbjct: 253 EHMNMSSEQNVPERYSFITTEETNFIGILNHYCQKTKRFPDFK-LVEKSGPSHDPQFVYK 311

Query: 193 VEISGLAPAQGMDCS 207
           V I       G+  +
Sbjct: 312 VLIDQREYPNGLGKT 326


>gi|224121666|ref|XP_002318642.1| predicted protein [Populus trichocarpa]
 gi|222859315|gb|EEE96862.1| predicted protein [Populus trichocarpa]
          Length = 179

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 4/120 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L+ +IGY F N   L +A+THSS S     + + L  LG  ++   +S         
Sbjct: 37  LDILQNQIGYTFKNIGYLRRAMTHSSFSQE---NNKALSILGSNVIDTSVSMYYLGKDIE 93

Query: 66  AKEGELSVRFNSLVSAETCS-QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               +L+   +     +T        L L   +RVS        + + S    +  ++  
Sbjct: 94  ISSKDLNRWISENAKVDTSCAVDGMRLGLHRVVRVSPKTNSTAPTVVCSAFRAIFGAIAI 153


>gi|195454350|ref|XP_002074202.1| GK12745 [Drosophila willistoni]
 gi|194170287|gb|EDW85188.1| GK12745 [Drosophila willistoni]
          Length = 845

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CS 207
                 +     L E         P+Y +   +GP H   F   VEI+G          S
Sbjct: 764 PQNNQDKHPVCVLNELTSKNKWTPPQYVLQQNTGPAHMRTFLFSVEINGQKYTPSNGCNS 823

Query: 208 KRAAEQVAAAEVLKREGIW 226
           K+ A+  AA   L+  G+ 
Sbjct: 824 KKEAKLNAAKLCLQALGLL 842


>gi|224613135|dbj|BAH24240.1| dsRNA-specific ribonuclease RNaseIII [Candidatus Phytoplasma
           oryzae]
          Length = 161

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 2/114 (1%)

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
           +  SI AD  E+L  A+YLD G                 K+            +      
Sbjct: 25  YNYSIIADAFEALFGAIYLDLGYSEVERVFYHIILPCLKKTINIIDFKTK--LQELVQTE 82

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                YK+    G  H+ +F     +      +G+  +K+AAEQ AA + LK  
Sbjct: 83  KKNICYKIISEKGLAHEKKFLAEAYLENKCLGRGLGKTKKAAEQRAAEKALKNI 136


>gi|54020492|ref|YP_115922.1| ribonuclease III [Mycoplasma hyopneumoniae 232]
 gi|53987665|gb|AAV27866.1| ribonuclease III [Mycoplasma hyopneumoniae 232]
          Length = 183

 Score = 62.6 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 5/178 (2%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
           LEFLGD ++   +S  +        EG  +   + L S  + +   +++ L +++ +   
Sbjct: 2   LEFLGDSVINYAVS-KVIYDNFYKNEGNSTQIRSLLTSTSSLANATKKVGLMNYVLLGRG 60

Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                      ++AD+ ES  AA+ LD G E    F+ +Y  +      + +      + 
Sbjct: 61  A--SEIRENNKLKADIFESFCAAILLDQGFEKLNEFLSEYLYKDVNFDTEKQYKDPKSIF 118

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     F  + +         D    F V +         G   S + AE  AA   L
Sbjct: 119 QEKIQTFSTSNKIHYLHTKLVDG--TFRVDLIWEKKKYGIGYGRSIKEAEFAAATNAL 174


>gi|167412541|gb|ABZ79975.1| double-stranded RNA binding protein [Vaccinia virus GLV-1h68]
          Length = 190

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      AD +  +I                                
Sbjct: 57  YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NPVTVINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 175 AKLAVDKL 182


>gi|167046030|gb|ABZ10546.1| dicer-like protein D [Placozoa sp. DMJ-2008]
          Length = 351

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 2   SALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
             ++ S+ + +   Y F N   L  A THSS++     +Y+RLE+LGD  L  L+   ++
Sbjct: 168 EDIQLSSCILRNTDYQFNNFYWLRIAFTHSSVASE---NYQRLEYLGDATLEYLLIEFVY 224

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
                   G++S   + +   +T S +A      + IR  S L+
Sbjct: 225 CRKPYFGPGKISHFKSVMTRNQTFSLIAIAFQFYTHIRCHSKLK 268


>gi|328779214|ref|XP_001121349.2| PREDICTED: probable RISC-loading complex subunit BRAFLDRAFT_242885
           [Apis mellifera]
          Length = 337

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQ+         P+Y+     GP H   FT+  E++ L    G+  +K+ A+Q AA ++L
Sbjct: 114 LQDLCVENNLQDPKYQQISDVGPPHAKIFTIECEVATLKE-IGVAKTKKQAKQEAAKKML 172

Query: 221 KRE 223
            + 
Sbjct: 173 DKL 175



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
                  + +    K  +TP Y++    G  H   F   V+   L  A G+  SK+ A+ 
Sbjct: 1   MSKTPVSILQEMMVKNKITPNYELIHDGGGSHMNVFAYQVKCDDL-IASGIGRSKKDAKH 59

Query: 214 VAAAEVLKRE 223
            AA  +L+  
Sbjct: 60  EAAKAMLETI 69


>gi|317018626|gb|ADU86891.1| E3L [Vaccinia virus]
          Length = 179

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      AD +  +I                                
Sbjct: 51  YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKSA 110

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 111 NPVTIINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 168

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 169 AKLAVDKL 176


>gi|167046028|gb|ABZ10545.1| dicer-like protein D [Trichoplax adhaerens]
          Length = 351

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 2   SALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
             ++ S+ + +   Y F N   L  A THSS++     +Y+RLE+LGD IL  L+   ++
Sbjct: 168 EDIQLSSCILRNTDYQFNNFYWLRIAFTHSSVASE---NYQRLEYLGDAILEYLLIEFVY 224

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
                   G++S   + +   +T S +A      + IR  S L+
Sbjct: 225 CRKPYFGPGKISHFKSVMTRNQTFSLIAIAFQFYTHIRCHSKLK 268


>gi|195996287|ref|XP_002108012.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens]
 gi|190588788|gb|EDV28810.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens]
          Length = 915

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 2   SALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
             ++ S+ + +   Y F N   L  A THSS++     +Y+RLE+LGD IL  L+   ++
Sbjct: 646 EDIQLSSCILRNTDYQFNNFYWLRIAFTHSSVASE---NYQRLEYLGDAILEYLLIEFVY 702

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
                   G++S   + +   +T S +A      + IR  S L+
Sbjct: 703 CRKPYFGPGKISHFKSVMTRNQTFSLIAIAFQFYTHIRCHSKLK 746



 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L +ALT  S+S     ++ERLE LGD  L  + +   F    + KEG +S+     VS  
Sbjct: 471 LLQALT--SLSADDFFNHERLEILGDSYLKFITTADYFFRNPNMKEGAMSLMRAINVSNS 528

Query: 83  TCSQVARELDLASFIRVSS 101
             S+ ++   L  +   + 
Sbjct: 529 HLSRTSKLKGLTLYQFNTP 547


>gi|149050635|gb|EDM02808.1| rCG61784 [Rattus norvegicus]
          Length = 513

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 24/61 (39%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V   YK    +GP HD RFT  V I      +G   SK+ A+  AA   ++ 
Sbjct: 14  NKYSQIHKVKIIYKEISVTGPPHDRRFTFQVIIEEREFPEGEGRSKQEAKNNAAKLAVEI 73

Query: 223 E 223
            
Sbjct: 74  L 74



 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RF    +I       G   +K+ A+Q+AA    ++ 
Sbjct: 125 RFICKCKIGQTTYGTGFGANKKEAKQLAAKNAYQKL 160


>gi|88854099|gb|ABD52517.1| double-stranded RNA-specific adenosine deaminase-like protein p25
           [Vaccinia virus]
          Length = 190

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 33/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      ADV+   I                                
Sbjct: 57  YSSDDIPPRWFMTTEADKPDADVMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWKDA 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NPVTVINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 175 AKLAVDKL 182


>gi|296422379|ref|XP_002840738.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636961|emb|CAZ84929.1| unnamed protein product [Tuber melanosporum]
          Length = 524

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 68/222 (30%), Gaps = 35/222 (15%)

Query: 21  SLLEKALTHSSISHSY--------QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            L ++A TH S             Q+ YERLEFLGD  L  + S +L+N F   +EG LS
Sbjct: 274 ELRQQAFTHKSFIKGEDAGLPGIEQQHYERLEFLGDSYLQSITSRILYNRFSKLREGPLS 333

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLR-------------KDVCSFMTSIQADVV 119
                LV+    S  A        +R S                       +    AD  
Sbjct: 334 DMRQQLVANRPLSTYATIYRFHDKVRESKGQNTAAPVALVHNSRGTYKDMGVNKTLADCF 393

Query: 120 ESLIAALYLDGGIEVAGTFVD--------KYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
           E+ IAA+ LD    V                  +    S         +           
Sbjct: 394 EAYIAAIVLDSPNGVDIAQRWLTELFEPKLKEMETQHASVGPVDKMAKQTLNTIVGGNRA 453

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSK 208
           T EY  T   G  +   + + V +     +      G   +K
Sbjct: 454 TVEYVWTDGEG-GNKGGYWITVYLTGWGFNKREIGSGWGNNK 494


>gi|156717296|ref|NP_001096190.1| adenosine deaminase, RNA-specific, B1 [Xenopus (Silurana)
           tropicalis]
 gi|134024214|gb|AAI36175.1| LOC100124739 protein [Xenopus (Silurana) tropicalis]
          Length = 719

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 114 QYKLISQTGPVHAPVFIMTVEVNGQVF-EGSGPTKKKAKLNAAEKALR 160



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y     SG  H   F + V +      +G   +K+ A+  AA   L   
Sbjct: 268 YDFVSESGESHAKNFVMSVTVDNETF-EGSGRNKKLAKARAAQSALASL 315


>gi|9506993|ref|NP_062208.1| interferon-induced, double-stranded RNA-activated protein kinase
           [Rattus norvegicus]
 gi|81910551|sp|Q63184|E2AK2_RAT RecName: Full=Interferon-induced, double-stranded RNA-activated
           protein kinase; AltName: Full=Eukaryotic translation
           initiation factor 2-alpha kinase 2; Short=eIF-2A protein
           kinase 2; AltName: Full=Interferon-inducible
           RNA-dependent protein kinase; AltName: Full=Protein
           kinase RNA-activated; Short=PKR
 gi|468373|gb|AAA61926.1| RNA-dependent initiation factor-2 kinase [Rattus norvegicus]
          Length = 513

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 24/61 (39%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V   YK    +GP HD RFT  V I      +G   SK+ A+  AA   ++ 
Sbjct: 14  NKYSQIHKVKIIYKEISVTGPPHDRRFTFQVIIEEREFPEGEGRSKQEAKNNAAKLAVEI 73

Query: 223 E 223
            
Sbjct: 74  L 74



 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RF    +I       G   +K+ A+Q+AA    ++ 
Sbjct: 125 RFICKCKIGQTTYGTGFGANKKEAKQLAAKNAYQKL 160


>gi|94483690|gb|ABF22807.1| double-stranded RNA binding protein [Variola virus]
 gi|94485708|gb|ABF24815.1| double-stranded RNA binding protein [Variola virus]
 gi|94487937|gb|ABF27033.1| double-stranded RNA binding protein [Variola virus]
          Length = 192

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 35/128 (27%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      A  +    A +      +        +      K     +
Sbjct: 57  YSSDDIPPRWFMTTEADKPDAMAMTMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWK 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +A        + +             GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NANPVTIINEYCQITKRDWSFRIESVGPSNSPTFYACVDIDGRVFNKADGKSKRDAKNNA 176

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 177 AKLAVDKL 184


>gi|163916108|gb|AAI57422.1| Double stranded RNA activated protein kinase 1 [Xenopus laevis]
          Length = 578

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           + ++K    +GP HDPRFT  V ++G    +G D  K+ AE +AA   L    
Sbjct: 20  SYQFKKVESTGPSHDPRFTFQVFVNGEKLGEGQDKKKKGAEYMAAKMALSTLK 72



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 18/61 (29%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +        +  R G  H P F     I      +    +K+ A++ AA   L   
Sbjct: 124 HELCQKHTLIVTFLDERHGQPHIPEFFCKAVIGKEEFPKAKGKNKKEAKRKAAHLALISL 183

Query: 224 G 224
            
Sbjct: 184 K 184


>gi|295132160|ref|YP_003582836.1| ribonuclease III [Zunongwangia profunda SM-A87]
 gi|294980175|gb|ADF50640.1| putative ribonuclease III [Zunongwangia profunda SM-A87]
          Length = 197

 Score = 62.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 67/173 (38%), Gaps = 2/173 (1%)

Query: 34  HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
                +YERLEFLGD +LG +I++ L+       EG L+   + +VS +  +++ ++L+L
Sbjct: 5   SGNPINYERLEFLGDAMLGSVIASHLYQEVPEGDEGYLTKMRSKIVSRKHLNELGKDLNL 64

Query: 94  ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
             F++ +    +   +   +I   +V ++                V + +       G+ 
Sbjct: 65  IRFVKSNIPNDQFGVNIHGNIFEALVGAIYLDRGYKYCNRFIYNRVIEPYVDIETLEGRV 124

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  ++            Y+V   +G D    F V + I     A+    
Sbjct: 125 ISYKSLLIEWCQK--QKKEFNYQVYEDTGRDELKHFAVKLWIDKKVIAKARAT 175


>gi|321448873|gb|EFX61617.1| hypothetical protein DAPPUDRAFT_272455 [Daphnia pulex]
          Length = 177

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRIL 51
              LE  + Y+F NR LL+ ALTH   S     +YERLEFLGD +L
Sbjct: 135 IDKLESILNYSFKNRGLLKGALTHRYFS---ALNYERLEFLGDIVL 177



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 1/97 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            E+  GY F +  +L +AL   + S  S  +  +RLE +GD +L L++    F    + +
Sbjct: 26  FEEIFGYKFKDEEMLHQALKRPTASLKSSVKKGDRLELVGDAVLDLIMIEECFERHVNYE 85

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
            G+LS     L   +T ++ A E+           + 
Sbjct: 86  AGQLSGVKCELTCNDTLARKAEEIQPDYPPEKCPKMD 122


>gi|317033008|ref|XP_001394728.2| hypothetical protein ANI_1_2258094 [Aspergillus niger CBS 513.88]
          Length = 889

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 70/218 (32%), Gaps = 25/218 (11%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           E+ +GY F ++SL  +++TH S +      SY RL FLG  +L  ++ + L  H      
Sbjct: 606 EELLGYTFTDKSLAVESMTHPSCTGLVQTTSYRRLSFLGASVLEWIVVSYLHRHAQVMNP 665

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
             +    ++  +    + +A                +       +  +  +   +     
Sbjct: 666 QRMQSLKSAFTNNTFLTFIAITFHQVREQNHIDVDDEHNVHKNVTTCSIRLWDFLRLHSD 725

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E++        K  A+K   + +     ++  A     V  +   +          
Sbjct: 726 ALSTELSDFVQKSSEKADAIKHELWEQRFYPWVRLRALGDMRVLSDIIQSIFG------- 778

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL-KREGI 225
               V I   A              +A+ + L ++ GI
Sbjct: 779 ---AVFIDSQAT-------------LASCDALAEKLGI 800


>gi|158706450|sp|A2QX45|DCL22_ASPNC RecName: Full=Dicer-like protein 2-2; Includes: RecName:
            Full=Endoribonuclease dcl2-2; Includes: RecName:
            Full=ATP-dependent helicase dcl2-2
          Length = 1362

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 70/218 (32%), Gaps = 25/218 (11%)

Query: 10   EKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            E+ +GY F ++SL  +++TH S +      SY RL FLG  +L  ++ + L  H      
Sbjct: 1079 EELLGYTFTDKSLAVESMTHPSCTGLVQTTSYRRLSFLGASVLEWIVVSYLHRHAQVMNP 1138

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
              +    ++  +    + +A                +       +  +  +   +     
Sbjct: 1139 QRMQSLKSAFTNNTFLTFIAITFHQVREQNHIDVDDEHNVHKNVTTCSIRLWDFLRLHSD 1198

Query: 129  DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                E++        K  A+K   + +     ++  A     V  +   +          
Sbjct: 1199 ALSTELSDFVQKSSEKADAIKHELWEQRFYPWVRLRALGDMRVLSDIIQSIFG------- 1251

Query: 189  FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL-KREGI 225
                V I   A              +A+ + L ++ GI
Sbjct: 1252 ---AVFIDSQAT-------------LASCDALAEKLGI 1273


>gi|134079420|emb|CAK40801.1| unnamed protein product [Aspergillus niger]
          Length = 1379

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 70/218 (32%), Gaps = 25/218 (11%)

Query: 10   EKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            E+ +GY F ++SL  +++TH S +      SY RL FLG  +L  ++ + L  H      
Sbjct: 1096 EELLGYTFTDKSLAVESMTHPSCTGLVQTTSYRRLSFLGASVLEWIVVSYLHRHAQVMNP 1155

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
              +    ++  +    + +A                +       +  +  +   +     
Sbjct: 1156 QRMQSLKSAFTNNTFLTFIAITFHQVREQNHIDVDDEHNVHKNVTTCSIRLWDFLRLHSD 1215

Query: 129  DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                E++        K  A+K   + +     ++  A     V  +   +          
Sbjct: 1216 ALSTELSDFVQKSSEKADAIKHELWEQRFYPWVRLRALGDMRVLSDIIQSIFG------- 1268

Query: 189  FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL-KREGI 225
                V I   A              +A+ + L ++ GI
Sbjct: 1269 ---AVFIDSQAT-------------LASCDALAEKLGI 1290


>gi|104642088|gb|ABF73314.1| double-stranded RNA-binding protein [Vaccinia virus]
          Length = 189

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      AD +  +I                                
Sbjct: 56  YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKGA 115

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 116 NPVTVINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 173

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 174 AKLAVDKL 181


>gi|77434212|gb|ABA82143.1| double-stranded RNA-binding protein [Vaccinia virus]
 gi|77434276|gb|ABA82145.1| double-stranded RNA-binding protein [Vaccinia virus]
 gi|77434313|gb|ABA82146.1| double-stranded RNA-binding protein [Vaccinia virus]
 gi|77434422|gb|ABA82148.1| double-stranded RNA-binding protein [Vaccinia virus]
 gi|82408803|gb|ABB73195.1| double-stranded RNA-binding protein [Vaccinia virus]
 gi|317018624|gb|ADU86890.1| E3L [Vaccinia virus]
          Length = 179

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      AD +  +I                                
Sbjct: 51  YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKGA 110

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 111 NPVTVINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 168

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 169 AKLAVDKL 176


>gi|66275856|ref|YP_232941.1| double-stranded RNA binding protein [Vaccinia virus]
 gi|137622|sp|P21605|VE03_VACCV RecName: Full=Protein E3; AltName: Full=p25
 gi|335750|gb|AAB59823.1| ORF2 [Vaccinia virus]
 gi|29692165|gb|AAO89338.1| double-stranded RNA binding protein [Vaccinia virus WR]
          Length = 190

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      AD +  +I                                
Sbjct: 57  YSSDDIPPRWFMTTEADKPDADAMADVIIDDVSREKSMREDHKSFDDVIPAKKIIDWKGA 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NPVTVINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 175 AKLAVDKL 182


>gi|22164648|ref|NP_671561.1| EVM043 [Ectromelia virus]
 gi|22123789|gb|AAM92347.1|AF523264_43 EVM043 [Ectromelia virus]
 gi|14488161|emb|CAC42116.1| dsRNA binding protein [Ectromelia virus]
          Length = 190

 Score = 62.3 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 31/128 (24%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +       + +   I                                
Sbjct: 57  YRSDDIPPRWFITTEADKPDTNTMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWKNA 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    +KR A+  A
Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPIFYACVDIDGRVFDKADGKTKRDAKNNA 174

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 175 AKLAVDKL 182


>gi|438962|gb|AAA60792.1| homolog of vaccinia virus CDS E3L (interferon resistance factor);
           putative [Variola major virus]
 gi|94483894|gb|ABF23010.1| double-stranded RNA binding protein [Variola virus]
 gi|94484097|gb|ABF23212.1| double-stranded RNA binding protein [Variola virus]
 gi|94484507|gb|ABF23620.1| double-stranded RNA binding protein [Variola virus]
 gi|94484704|gb|ABF23816.1| double-stranded RNA binding protein [Variola virus]
 gi|94484902|gb|ABF24013.1| double-stranded RNA binding protein [Variola virus]
 gi|94485100|gb|ABF24210.1| double-stranded RNA binding protein [Variola virus]
 gi|94485302|gb|ABF24411.1| double-stranded RNA binding protein [Variola virus]
 gi|94485505|gb|ABF24613.1| double-stranded RNA binding protein [Variola virus]
 gi|94485910|gb|ABF25016.1| double-stranded RNA binding protein [Variola virus]
 gi|94486922|gb|ABF26023.1| double-stranded RNA binding protein [Variola virus]
 gi|94487328|gb|ABF26427.1| double-stranded RNA binding protein [Variola virus]
 gi|94487531|gb|ABF26629.1| double-stranded RNA binding protein [Variola virus]
 gi|94487732|gb|ABF26829.1| double-stranded RNA binding protein [Variola virus]
 gi|94488539|gb|ABF27632.1| double-stranded RNA binding protein [Variola virus]
 gi|94488740|gb|ABF27832.1| double-stranded RNA binding protein [Variola virus]
 gi|94488941|gb|ABF28032.1| double-stranded RNA binding protein [Variola virus]
 gi|94489141|gb|ABF28231.1| double-stranded RNA binding protein [Variola virus]
 gi|94489340|gb|ABF28429.1| double-stranded RNA binding protein [Variola virus]
 gi|94489543|gb|ABF28631.1| double-stranded RNA binding protein [Variola virus]
 gi|94489742|gb|ABF28829.1| double-stranded RNA binding protein [Variola virus]
 gi|94489947|gb|ABF29033.1| double-stranded RNA binding protein [Variola virus]
 gi|109724290|gb|ABG43415.1| double-stranded RNA binding protein [Variola virus]
 gi|109724492|gb|ABG43616.1| double-stranded RNA binding protein [Variola virus]
 gi|109724697|gb|ABG43820.1| double-stranded RNA binding protein [Variola virus]
 gi|109724901|gb|ABG44023.1| double-stranded RNA binding protein [Variola virus]
 gi|109726326|gb|ABG45441.1| double-stranded RNA binding protein [Variola virus]
          Length = 192

 Score = 61.9 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 35/128 (27%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      A  +    A +      +        +      K     +
Sbjct: 57  YSSDDIPPRWFMTTEADKPDAMAMTMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWK 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +A        + +             GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NANPVTIINEYCQITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 176

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 177 AKLAVDKL 184


>gi|116205049|ref|XP_001228335.1| hypothetical protein CHGG_10408 [Chaetomium globosum CBS 148.51]
 gi|88176536|gb|EAQ84004.1| hypothetical protein CHGG_10408 [Chaetomium globosum CBS 148.51]
          Length = 1227

 Score = 61.9 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             LE  +GY F  ++LL +A+TH S +    + S +RLEFLGD IL  ++   LF   D A
Sbjct: 1116 QLESLVGYTFTKKALLVEAMTHPSCNGPGIRASLDRLEFLGDAILDYVVVNKLFAISDPA 1175

Query: 67   KEGELSVRFNSLVSAETCSQVARELDL 93
                 S+                 ++ 
Sbjct: 1176 PLENSSLHLLRTALVNADILGFLVMEW 1202



 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 9    LEKRI---GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            LE R+   G    + SL+  A+T +S +      YER+EFLGD IL    +      +  
Sbjct: 934  LESRLEQTGIT--DLSLIVTAIT-ASAARGPT-DYERIEFLGDSILKFCTTINCSATYLK 989

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
              EG LS   + +VS     + A +  L  +I  
Sbjct: 990  FPEGCLSPLKDKIVSNSRLFRAAVDFGLDRYIIH 1023


>gi|320586295|gb|EFW98974.1| nucleolar rnase [Grosmannia clavigera kw1407]
          Length = 372

 Score = 61.9 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 67/245 (27%), Gaps = 56/245 (22%)

Query: 26  ALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           ALTH  +       SYE  EFLGD  +  L S  +   F     G  S     L+     
Sbjct: 104 ALTHQGMVEKNWHRSYEVFEFLGDAFIYHLASEYISQTFPLLSPGRCSQIRERLLRNSNL 163

Query: 85  SQVARELDLASFIRVSSDLRKDVC--------SFMTSIQADVVESLIAALYLDGGIEVAG 136
           S  +    L    ++ ++ + +               +  D+ E+ + AL       V  
Sbjct: 164 SLYSLHYGLDKRAKLPAEFKGEGRDGGSRARLEQRNKMYGDLFEAYVGALIRSDPQGVER 223

Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD---------- 186
                            R + +   +E A      +        +GP+H           
Sbjct: 224 AQKWLKRLWALTIEKDIREEYQRRDKERARNPSLES------SATGPEHTSERPPKLKLI 277

Query: 187 ---------------------------PRFTVVVEISG----LAPAQGMDCSKRAAEQVA 215
                                      P F + + + G         G   SK+ A   A
Sbjct: 278 DLIGCKLVKIRYEDAPCKPRKCKDTGLPLFVIDLWVDGWGKSECLGHGSGLSKKDAGSNA 337

Query: 216 AAEVL 220
           A + L
Sbjct: 338 AQQAL 342


>gi|299473645|emb|CBN78039.1| RNAseIII [Ectocarpus siliculosus]
          Length = 523

 Score = 61.9 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 5/136 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFN- 61
              +E  +GY F +R LL  ALTH S  +        ++ LE+LGD +L L +S+ LF  
Sbjct: 14  LPAVEHALGYCFGDRRLLLTALTHRSFCNETHTASGDFDELEWLGDSVLQLAVSSWLFRS 73

Query: 62  -HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                   G+LS      V +  C   AR+L+L  ++R+           +      V+ 
Sbjct: 74  AKGSRRSSGQLSATRQRFVDSHACESFARQLNLLPYLRIGHGQPVGGTKILADCFEAVLG 133

Query: 121 SLIAALYLDGGIEVAG 136
           ++         +E   
Sbjct: 134 AVYVDAGGCSDLEPIH 149


>gi|67937802|gb|AAY83357.1| putative double-stranded RNA binding protein [Vaccinia virus]
          Length = 190

 Score = 61.9 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 33/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      ADV+   I                                
Sbjct: 57  YSSDDIPPRWFMTTEADKPDADVMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWKGA 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NPVTVINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 175 AKLAVDKL 182


>gi|44971411|gb|AAS49761.1| RPXV048 [Rabbitpox virus]
          Length = 190

 Score = 61.9 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 33/128 (25%), Gaps = 2/128 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R  + +      ADV+   I                                
Sbjct: 57  YSSDDIPPRWFMTTEADKPDADVMADAIIDDVSREKSMREDHKSFDDVIPAKKIIDWKGA 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NPVTVINEYCQITR--RDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 175 AKLAVDKL 182


>gi|281211700|gb|EFA85862.1| putative RNase III [Polysphondylium pallidum PN500]
          Length = 1126

 Score = 61.9 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 72/202 (35%), Gaps = 26/202 (12%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----------------ESYERLEFLGD 48
           +  + ++ I Y+  N  LL +  TH S   S Q                   +R+EFLGD
Sbjct: 696 KMESFKRNI-YSINNERLLREVFTHPSTKRSNQTPPVNMKIYKNYKFYEGDNQRIEFLGD 754

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
            +L    S  LF  F  A EG L+ + + + +     ++    ++   +R+  +      
Sbjct: 755 SVLKFCTSIYLFYKFPEAMEGVLTTKRSEMTNNNYLIEICDMFEMDEVLRLPQNKDDIK- 813

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
                 +ADVVE+L  A+YL    E       ++  +   K    +        ++    
Sbjct: 814 ----KPKADVVEALFGAVYL----ERGMYEAFRFIMKMIFKIDHSKFPEYKCHHQYETPL 865

Query: 169 FGVTPEYKVTFRSGPDHDPRFT 190
             V             H+  FT
Sbjct: 866 NDVQINILFANNIEIKHNCLFT 887



 Score = 48.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 6/125 (4%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
                +  L  +A+   + S   + SY+RLEFLGD  L ++ S  LF+ F + +EG LS 
Sbjct: 877 NIEIKHNCLFTEAM---NCSSDPRMSYQRLEFLGDAFLDVVTSDFLFHAFPNEQEGFLSQ 933

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
               LV  ++ + + ++L+L   +            F      D+ ES++  L LD GIE
Sbjct: 934 ARALLVKNDSLACIFQQLNLKDCV---DLSSCPGIVFNQKRMGDLFESVVGCLLLDQGIE 990

Query: 134 VAGTF 138
               F
Sbjct: 991 KTKDF 995



 Score = 38.0 bits (86), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 190 TVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220
            VVV+  G    A+G   +K+ AE+ AA +VL
Sbjct: 42  EVVVKYGGKVYRAEGRAKAKKEAERYAARDVL 73


>gi|156396886|ref|XP_001637623.1| predicted protein [Nematostella vectensis]
 gi|156224737|gb|EDO45560.1| predicted protein [Nematostella vectensis]
          Length = 332

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 5/122 (4%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           A++    EKRIGY F+N+  L +ALTH+S S +  + +    F G  +L     +     
Sbjct: 190 AVQLQGFEKRIGYEFSNKLYLIQALTHASYSQNSPKHH----FFGHALLAEREGSNKKQV 245

Query: 63  FDSAKEGELSVRFNSLVSA-ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
             S            L +           L   +  RV S +RK        I     + 
Sbjct: 246 VASFATTTFVTLALCLANNLRCVLTRYYSLATYASGRVVSSVRKSSKPIFIKICVSFGQE 305

Query: 122 LI 123
            +
Sbjct: 306 FM 307


>gi|149031451|gb|EDL86441.1| adenosine deaminase, RNA-specific, B2 [Rattus norvegicus]
          Length = 746

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
                Q   K   +    K  L +    K     +Y++  ++GP H P F V VE++GL 
Sbjct: 110 HFCKLQLIWKKLSWSMTPKNALVQLHELK--PGLQYRMVSQTGPVHAPVFAVAVEVNGLT 167

Query: 200 PAQGMDCSKRAAEQVAAAEVLK 221
             +G   +K+ A+  AA   LK
Sbjct: 168 F-EGTGPTKKKAKMRAAEMALK 188


>gi|18959240|ref|NP_579836.1| double-stranded RNA-specific editase B2 [Rattus norvegicus]
 gi|33112433|sp|P97616|RED2_RAT RecName: Full=Double-stranded RNA-specific editase B2; AltName:
           Full=RNA-dependent adenosine deaminase 3; AltName:
           Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
           enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
 gi|1814270|gb|AAB41862.1| double-stranded RNA specific adenosine deaminase [Rattus
           norvegicus]
          Length = 746

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
                Q   K   +    K  L +    K     +Y++  ++GP H P F V VE++GL 
Sbjct: 110 HFCKLQLIWKKLSWSMTPKNALVQLHELK--PGLQYRMVSQTGPVHAPVFAVAVEVNGLT 167

Query: 200 PAQGMDCSKRAAEQVAAAEVLK 221
             +G   +K+ A+  AA   LK
Sbjct: 168 F-EGTGPTKKKAKMRAAEMALK 188


>gi|5830605|emb|CAB54644.1| C3L protein [Variola minor virus]
 gi|94484303|gb|ABF23417.1| double-stranded RNA binding protein [Variola virus]
          Length = 192

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 24/70 (34%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            ++A        + +             GP + P F   V+I G    +    SKR A+ 
Sbjct: 115 WKNANPVTIINEYCQITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKN 174

Query: 214 VAAAEVLKRE 223
            AA   + + 
Sbjct: 175 NAAKLAVDKL 184


>gi|73953914|ref|XP_868240.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
           isoform 5 [Canis familiaris]
          Length = 148

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 28/90 (31%)

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
                   +      +    +  +  L      K    P YK     GP H   +TV V 
Sbjct: 18  PWQTFWNEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVY 77

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             G     G   S + AE  AA + L++  
Sbjct: 78  FKGERIGCGKGPSIQQAEMGAAMDALEKYN 107


>gi|301611383|ref|XP_002935222.1| PREDICTED: double-stranded RNA-specific editase B2-like [Xenopus
           (Silurana) tropicalis]
          Length = 731

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              +Y+   ++GP H P F+V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 124 PDLQYRFVSQTGPVHAPVFSVAVEVNGLTF-EGTGPTKKKAKMRAAELALK 173



 Score = 48.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 1/99 (1%)

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +     G  V  T       ++         + +       +          ++      
Sbjct: 234 SSAYRHGRLVCHTLDLMGHAKQNKHKMASPAEREKNPVVMLNELRPGLRYVCLSETVEKQ 293

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H  RF + + + G    +G   SK+ A+  AA   L+  
Sbjct: 294 HIKRFVMAMRVDGRTF-EGSGRSKKLAKAQAAQNALQDL 331


>gi|148672021|gb|EDL03968.1| TAR (HIV) RNA binding protein 2, isoform CRA_b [Mus musculus]
          Length = 277

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 41/136 (30%), Gaps = 2/136 (1%)

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
               R+L   S                 S   +    + A         V         +
Sbjct: 40  QPSTRQLRWPSNTSKGGACWNQPWRTADSSPPEDTPVVAAEAAAPVPSAVLTRSPPMEMQ 99

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
                      +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 100 PPVSPQQSEC-NPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE-RFIEIGS 157

Query: 205 DCSKRAAEQVAAAEVL 220
             SK+ A++ AAA++L
Sbjct: 158 GTSKKLAKRNAAAKML 173


>gi|322798617|gb|EFZ20221.1| hypothetical protein SINV_06556 [Solenopsis invicta]
          Length = 386

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 25  KALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           +A TH S  ++   E Y+RLEFLGD IL  LI+  ++    +   GEL+   ++LV+  T
Sbjct: 150 QAFTHPSYTANGLTECYQRLEFLGDAILDFLITCYIYEKCGNLSPGELTDLRSALVNNIT 209

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            + +A    L   +   +    ++       Q D
Sbjct: 210 FACLAVRYGLHIALLAYAPKLDEIIDRFVKFQED 243


>gi|90660297|gb|ABD97411.1| double-stranded RNA binding protein [Cowpox virus]
          Length = 194

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 39/130 (30%), Gaps = 2/130 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--F 153
           +       R  + +      AD +   +A   +D          D       + + K   
Sbjct: 57  YSSDDIPPRWFMTTEADKPDADAMADSMADSIIDDASREKSMREDHKSFDDVIPAKKIID 116

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            +DA        + +             GP + P F   V+I G    +    SKR A+ 
Sbjct: 117 WKDANPVTIINEYCQITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKN 176

Query: 214 VAAAEVLKRE 223
            AA   + + 
Sbjct: 177 NAAKLAVDKL 186


>gi|6969701|gb|AAF33913.1| TE3L [Vaccinia virus Tian Tan]
          Length = 115

 Score = 61.9 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 24/70 (34%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            +DA        + +             GP + P F   V+I G    +    SKR A+ 
Sbjct: 38  WKDANPVTIINEYCQITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKN 97

Query: 214 VAAAEVLKRE 223
            AA   + + 
Sbjct: 98  NAAKLAVDKL 107


>gi|326330626|ref|ZP_08196930.1| ribonuclease III [Nocardioidaceae bacterium Broad-1]
 gi|325951467|gb|EGD43503.1| ribonuclease III [Nocardioidaceae bacterium Broad-1]
          Length = 183

 Score = 61.5 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 1/161 (0%)

Query: 50  ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
           +LG++++  L+       EG+L+    ++V+A   ++V + + L   I++          
Sbjct: 1   MLGVVVTETLYRTHPDLPEGKLAKLRAAVVNARALAEVGQAIGLGQHIKLGRGEEATGGR 60

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAK 168
              SI +D VE++I A++L GGIEV+   V + +     K+             +   A+
Sbjct: 61  EKASIVSDTVEAVIGAVHLSGGIEVSTVLVHRLFDPLIEKASDLGAGLDWKTSLQELAAE 120

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             +     V    GPDH   FT  V +       G+  SK+
Sbjct: 121 RALGVPEYVITDEGPDHMKTFTAKVRVGDQLYGNGVGRSKK 161


>gi|189241534|ref|XP_969823.2| PREDICTED: similar to adenosine deaminase [Tribolium castaneum]
 gi|270001017|gb|EEZ97464.1| hypothetical protein TcasGA2_TC011295 [Tribolium castaneum]
          Length = 580

 Score = 61.5 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           Y    + GP H P F V VE+ G     G+  SK+ A+  AA E LK
Sbjct: 34  YNFIEQRGPSHAPLFKVAVEVDGQTY-YGVGGSKKLAKCKAAEEALK 79


>gi|313679612|ref|YP_004057351.1| double-stranded RNA binding domain protein [Oceanithermus profundus
           DSM 14977]
 gi|313152327|gb|ADR36178.1| double-stranded RNA binding domain protein [Oceanithermus profundus
           DSM 14977]
          Length = 165

 Score = 61.5 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
               K+ L  +  +K    P    T  +G + DP F   V ++G   A G   SKR AE+
Sbjct: 1   MTHPKSALNAYCQSKNLPLP-KFETRGTGTEDDPLFISDVSLNGELLATGQGRSKREAEK 59

Query: 214 VAAAEVLKRE 223
           VAA   L+  
Sbjct: 60  VAAELALELL 69


>gi|72009988|ref|XP_781832.1| PREDICTED: similar to adenosine deaminase [Strongylocentrotus
           purpuratus]
 gi|115934907|ref|XP_001189241.1| PREDICTED: similar to adenosine deaminase [Strongylocentrotus
           purpuratus]
          Length = 696

 Score = 61.5 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 1/103 (0%)

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           S++  +  D           K  ++      K +     +       +     +Y++   
Sbjct: 194 SMMKVVLADKTQNSPDVMNMKVDQEPNGSLTKKKEQPSGKNPVMILNELKPGQKYEMQEE 253

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SG  H   FT+ + I G    QG   +K+ A+Q AA   L   
Sbjct: 254 SGQSHSKNFTMSLTIDGKNF-QGTGRNKKLAKQRAAQAALIAL 295



 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            ++GP H P F V VE++     +G   SK+ A   AA   LK
Sbjct: 103 SQTGPVHAPTFVVSVEVNDQ-LFEGTGRSKKTARMHAAELALK 144


>gi|196007068|ref|XP_002113400.1| hypothetical protein TRIADDRAFT_57522 [Trichoplax adhaerens]
 gi|190583804|gb|EDV23874.1| hypothetical protein TRIADDRAFT_57522 [Trichoplax adhaerens]
          Length = 213

 Score = 61.5 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 71/190 (37%), Gaps = 7/190 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLIST 57
            +    ++KR+GY   N +LL +ALT  S       ++ + + +RL+++G  +    I  
Sbjct: 19  RVDIENMQKRLGYHIKNINLLLQALTRQSAIRQGIHYASKSNNQRLQWVGSNMFHSGIVY 78

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+  + +             ++  +   +  E+     +        D     + I A 
Sbjct: 79  KLYEKYANNSYISTDYLNKVAINITSNMALVAEIGKRIGLASCVFRGSDEEIITSEILAH 138

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEY 175
              +++ ++ LD G + A   V +   +  L + +  F+R   +           +    
Sbjct: 139 TFLAILGSITLDDGGQKAVHDVIERHWKWFLDNPEESFKRRPSSFHTRMPPRSATMPSRQ 198

Query: 176 KVTFRSGPDH 185
           ++     P+H
Sbjct: 199 RIRSSDFPNH 208


>gi|47226805|emb|CAG06647.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 678

 Score = 61.5 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           E     V   ++ +  K        K  L +          +YK+  ++GP H P F + 
Sbjct: 43  EGNNGHVHSKYRPKKRKKVPGPVLPKNALMQLNE--IKPGLQYKLLSQTGPVHAPVFVMS 100

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           VE++G    +G   +K+ A+  AA + L+
Sbjct: 101 VEVNGQ-LFEGSGPTKKKAKLNAAEKALR 128


>gi|148700329|gb|EDL32276.1| adenosine deaminase, RNA-specific, B2, isoform CRA_a [Mus musculus]
          Length = 742

 Score = 61.5 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 141 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAEMALK 187


>gi|26337823|dbj|BAC32597.1| unnamed protein product [Mus musculus]
          Length = 701

 Score = 61.5 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 141 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAEMALK 187


>gi|37590574|gb|AAH59822.1| Adarb2 protein [Mus musculus]
          Length = 701

 Score = 61.5 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 141 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAEMALK 187


>gi|8699065|gb|AAF78580.1| RNA adenosine deaminase RED2 [Mus musculus]
          Length = 731

 Score = 61.5 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 131 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAEMALK 177


>gi|7798626|gb|AAF69767.1| double stranded RNA adenosine deaminase RED2 [Takifugu rubripes]
          Length = 725

 Score = 61.5 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++  ++GP H P F++ VE++GL   +G   +K+ A+  AA   LK
Sbjct: 115 QYRMVSQTGPVHAPIFSIAVEVNGLTF-EGTGPTKKKAKMRAAELALK 161



 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F + V + G    +G   SK+ A+  AA   L+  
Sbjct: 286 RSFVMAVRVDGR-IFEGCGRSKKLAKNQAAQCALRAL 321


>gi|8571466|gb|AAF76894.1|AF270495_1 RNA dependent adenosine deaminase 3 [Mus musculus]
          Length = 745

 Score = 61.5 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 141 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAEMALK 187


>gi|74148073|dbj|BAE22359.1| unnamed protein product [Mus musculus]
          Length = 745

 Score = 61.5 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 141 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAEMALK 187


>gi|31542106|ref|NP_443209.2| double-stranded RNA-specific editase B2 [Mus musculus]
 gi|33112435|sp|Q9JI20|RED2_MOUSE RecName: Full=Double-stranded RNA-specific editase B2; AltName:
           Full=RNA-dependent adenosine deaminase 3; AltName:
           Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
           enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
 gi|26329549|dbj|BAC28513.1| unnamed protein product [Mus musculus]
 gi|30851427|gb|AAH52426.1| Adenosine deaminase, RNA-specific, B2 [Mus musculus]
 gi|74224054|dbj|BAE23882.1| unnamed protein product [Mus musculus]
 gi|74226553|dbj|BAE23939.1| unnamed protein product [Mus musculus]
 gi|148700330|gb|EDL32277.1| adenosine deaminase, RNA-specific, B2, isoform CRA_b [Mus musculus]
          Length = 745

 Score = 61.5 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 141 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAEMALK 187


>gi|317419725|emb|CBN81761.1| Double-stranded RNA-specific editase B2 [Dicentrarchus labrax]
          Length = 726

 Score = 61.5 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++  ++GP H P F++ VE++GL   +G   +K+ A+  AA   LK
Sbjct: 112 QYRMVSQTGPVHAPVFSIAVEVNGLTF-EGTGPTKKKAKMRAAELALK 158



 Score = 50.7 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE-GIWT 227
             F + V + G    +G   SK+ A+  AA   L+    I T
Sbjct: 283 RSFVMAVRVDGR-IFEGCGRSKKLAKNQAAQCALQALFNIRT 323


>gi|326670793|ref|XP_687110.5| PREDICTED: double-stranded RNA-specific editase 1-like [Danio
           rerio]
          Length = 750

 Score = 61.5 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           E         ++ +  K        K  L +          +YK+  ++GP H P F + 
Sbjct: 103 EGNNGHSHSKFRPKKRKKTPGPVLPKNALMQLNE--IKPGLQYKLLSQTGPVHAPVFVMT 160

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           VE++G    +G   +K+ A+  AA + L+
Sbjct: 161 VEVNGQ-LFEGSGPTKKKAKLNAAEKALR 188


>gi|302412697|ref|XP_003004181.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261356757|gb|EEY19185.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 1240

 Score = 61.5 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           LE+ I Y F  + LL +++TH+S +  +     ERLEFLGD IL  ++ + LF    S  
Sbjct: 937 LEELIDYTFTKKILLIESITHASFTAGHVNGCLERLEFLGDAILDDIVVSHLFPLNLSHD 996

Query: 68  E 68
            
Sbjct: 997 R 997



 Score = 39.1 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
            F++ SL+  A+  S+       +YERLEFLGD IL L  +              L  
Sbjct: 775 NFSDPSLVLTAI--STKGSLEATNYERLEFLGDSILKLCTTVNAAALHGLVSNSRLCR 830


>gi|148230009|ref|NP_001088561.1| adenosine deaminase, RNA-specific, B1 [Xenopus laevis]
 gi|54648473|gb|AAH84960.1| LOC495438 protein [Xenopus laevis]
          Length = 699

 Score = 61.5 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYKLISQTGPVHAPVFIMTVEVNGQGF-EGSGPTKKKAKLNAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y     SG  H   F + V +      +G   +K+ A+  AA   L   
Sbjct: 248 YDFVSESGESHAKNFVMSVTVDNETF-EGSGRNKKLAKARAAQSALASL 295


>gi|195108151|ref|XP_001998656.1| GI24090 [Drosophila mojavensis]
 gi|193915250|gb|EDW14117.1| GI24090 [Drosophila mojavensis]
          Length = 873

 Score = 61.5 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAA 211
             +     L E         P+Y +   SGP H   F   VEI+G          +K+ A
Sbjct: 796 QDKHPVCVLNELTSKNKWTPPQYTLKDDSGPSHSRMFLFSVEINGQTYTPAQACNNKKEA 855

Query: 212 EQVAAAEVLKREGIW 226
           +  AA   L+  GI 
Sbjct: 856 KLNAAKLCLRALGIL 870


>gi|318042834|ref|ZP_07974790.1| putative ribonuclease III [Synechococcus sp. CB0101]
          Length = 242

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 5/186 (2%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALTH+S       ++E+LEFLGD +L L  S  L  H      GE S     LVS    
Sbjct: 37  EALTHTSA--GLAINHEQLEFLGDAVLRLAASEYLEQHHPELSVGERSALRAQLVSDRWL 94

Query: 85  SQVARELDLASFIRVSS--DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
           ++V   + ++  +R+           S + +   + +   +   +               
Sbjct: 95  AEVGEAIGISDALRIGPTAGGDATALSTLRAEATEALIGALYRAFGSLAPVHQWLTPSWE 154

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLAPA 201
              RA+ S   R + K+ LQEW+ AK    P Y+   RS    DP RF   V + G   A
Sbjct: 155 RTSRAVLSDPHRGNCKSALQEWSQAKALGLPTYRTKERSKRHGDPQRFHCHVGLEGWISA 214

Query: 202 QGMDCS 207
           +G   S
Sbjct: 215 EGWGGS 220


>gi|74136125|ref|NP_001027924.1| adenosine deaminase ADAR2-a variant [Takifugu rubripes]
 gi|22506831|gb|AAM97655.1| adenosine deaminase ADAR2-a variant [Takifugu rubripes]
          Length = 694

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 84  QYKLLSQTGPVHAPVFVMSVEVNGQ-LFEGSGPTKKKAKLNAAEKALR 130


>gi|7798624|gb|AAF69766.1| double-stranded RNA adenosine deaminase RED1A [Takifugu rubripes]
          Length = 692

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 82  QYKLLSQTGPVHAPVFVMSVEVNGQ-LFEGSGPTKKKAKLNAAEKALR 128


>gi|114600833|ref|XP_001157148.1| PREDICTED: ribonuclease III, nuclear isoform 2 [Pan troglodytes]
          Length = 1193

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLA 94
            F    EG L++  +SLV+  T ++VA EL++ 
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELEIK 1160



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 926  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +           +    
Sbjct: 986  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYP 1045

Query: 158  KTELQEWAHAKFGVTPEYKVT 178
               LQ           E    
Sbjct: 1046 LHPLQLQEPNTDRQLIETSPV 1066



 Score = 43.0 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 842 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 872


>gi|327274458|ref|XP_003221994.1| PREDICTED: double-stranded RNA-specific editase B2-like [Anolis
           carolinensis]
          Length = 714

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
                Q   K   +    K  L +    K     +YK+  ++GP H P F V VE++GL 
Sbjct: 82  HFCKLQLIWKKVSWSVTPKNALVQLHELK--PGLQYKMVSQTGPVHAPVFAVAVEVNGLT 139

Query: 200 PAQGMDCSKRAAEQVAAAEVLK 221
             +G   +K+ A+  AA   LK
Sbjct: 140 F-EGTGPTKKKAKMRAAELALK 160


>gi|224044691|ref|XP_002193461.1| PREDICTED: similar to adenosine deaminase, RNA-specific, B2
           [Taeniopygia guttata]
          Length = 744

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
                Q   K   +    K  L +    K     +YK+  ++GP H P F V VE++GL 
Sbjct: 109 HFCKLQLIWKKVSWSVTPKNALVQLHELK--PGLQYKMVSQTGPVHAPVFAVAVEVNGLT 166

Query: 200 PAQGMDCSKRAAEQVAAAEVLK 221
             +G   +K+ A+  AA   LK
Sbjct: 167 F-EGTGPTKKKAKMRAAELALK 187


>gi|161484666|ref|NP_571685.2| adenosine deaminase, RNA-specific, B1 [Danio rerio]
 gi|148726053|emb|CAN88439.1| adenosine deaminase, RNA-specific, B1 [Danio rerio]
          Length = 720

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 110 QYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAAEKALR 156


>gi|148726052|emb|CAN88438.1| adenosine deaminase, RNA-specific, B1 [Danio rerio]
          Length = 689

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 79  QYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAAEKALR 125


>gi|92097709|gb|AAI15171.1| Adarb1 protein [Danio rerio]
          Length = 233

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 110 QYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAAEKALR 156


>gi|63101747|gb|AAH95026.1| Adarb1 protein [Danio rerio]
          Length = 233

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 110 QYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAAEKALR 156


>gi|15593018|gb|AAL02180.1|AF403111_1 adenosine deaminase [Danio rerio]
 gi|15593024|gb|AAL02182.1|AF403113_1 adenosine deaminase [Danio rerio]
          Length = 689

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 79  QYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAAEKALR 125


>gi|15593021|gb|AAL02181.1|AF403112_1 adenosine deaminase [Danio rerio]
 gi|15593015|gb|AAL02179.1| adenosine deaminase [Danio rerio]
          Length = 720

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 110 QYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAAEKALR 156


>gi|296812107|ref|XP_002846391.1| dicer-like protein 2 [Arthroderma otae CBS 113480]
 gi|238841647|gb|EEQ31309.1| dicer-like protein 2 [Arthroderma otae CBS 113480]
          Length = 1437

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             S +E  I Y+F  ++LL  +L+H S +     +Y+RLEFLGD IL  +++  LF     
Sbjct: 1155 LSKIEPLIDYSFTKKALLATSLSHPS-NPISGMTYQRLEFLGDSILDSIVTRALFRSNKE 1213

Query: 66   AKEGELSVRFNSLVSAETCSQVARE 90
                ++ +   +LV+A+  + +   
Sbjct: 1214 IPHQDMHLMRTALVNADYLAFLCMN 1238



 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F +  L+  A++ SS   S   +Y+RLEFLGD  L L  S  L        EG LS +  
Sbjct: 980  FKDIQLVLTAISASSAREST--NYQRLEFLGDSALKLHTSMQLLVDHPFWHEGLLSHKKG 1037

Query: 77   SLVSAETCSQVARELDLASFIRVSS 101
             ++S     +   E  L  FI  + 
Sbjct: 1038 FIISNSRLWKATIETGLDRFILTAC 1062


>gi|301608714|ref|XP_002933926.1| PREDICTED: interferon-induced, double-stranded RNA-activated
           protein kinase [Xenopus (Silurana) tropicalis]
          Length = 534

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             + G  HDP FTV + I      +G   SK+AAE++AA   L   
Sbjct: 24  ISKEGSPHDPLFTVHLFIKNEMFGEGQGKSKKAAEKIAARIGLAAL 69



 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  ++   R GPDH+P+F  V E++     +G   +K+ A + AA   L+   
Sbjct: 132 SRNFRDVDRYGPDHEPKFYCVAEVNKREYPEGWGKNKKQARKKAAFLALRLLK 184


>gi|118085593|ref|XP_418563.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 803

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
                Q   K   +    K  L +    K     +YK+  ++GP H P F V VE++GL 
Sbjct: 120 HFCKLQLIWKKVSWSVTPKNALVQLHELK--PGLQYKMVSQTGPVHAPVFAVAVEVNGLT 177

Query: 200 PAQGMDCSKRAAEQVAAAEVLK 221
             +G   +K+ A+  AA   LK
Sbjct: 178 F-EGTGPTKKKAKMRAAELALK 198



 Score = 35.7 bits (80), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/85 (10%), Positives = 24/85 (28%), Gaps = 1/85 (1%)

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +     G  +  T       ++       + +++       +          ++      
Sbjct: 259 STAYRHGRLLCHTLDLMGHGKQNRHKMASKAESEKNPVVLLNELRSGLRYVCLSETVEKQ 318

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           H   F + V + G    +G   SK+
Sbjct: 319 HIKSFVMAVRVDGRTF-EGSGRSKK 342


>gi|291409122|ref|XP_002720862.1| PREDICTED: adenosine deaminase, RNA-specific, B2-like [Oryctolagus
           cuniculus]
          Length = 734

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 130 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALK 176


>gi|289526478|pdb|2KHX|A Chain A, Drosha Double-Stranded Rna Binding Motif
          Length = 85

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 24/65 (36%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            L      K    P YK     GP H   +TV V   G     G   S + AE  AA + 
Sbjct: 11  CLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 70

Query: 220 LKREG 224
           L++  
Sbjct: 71  LEKYN 75


>gi|208690891|gb|ACI31221.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Ateles
           geoffroyi]
          Length = 552

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 20/45 (44%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            SGP HD RFT  V I G    +    SK+ A   AA   ++   
Sbjct: 32  NSGPPHDRRFTFQVIIDGREFPEAEGRSKKEATNAAAKVAVEILN 76



 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E  V+  +GP+    F    ++       G   +K+ A+Q+AA     + 
Sbjct: 116 VNYEPCVSGMNGPEG---FHYKCKVGQKEYGIGTGSTKQEAKQLAAKLAYLQI 165


>gi|307110681|gb|EFN58917.1| hypothetical protein CHLNCDRAFT_140869 [Chlorella variabilis]
          Length = 171

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 7/140 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LE+R+ Y F N   L+ AL H S       +  RL +LGD +LG  +S LL+     
Sbjct: 20  VKALEQRLNYNFNNTWGLKLALVHPSYGE---LNNARLTWLGDAVLGAAVSDLLYQALPD 76

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT----SIQADVVES 121
           A    L     ++V  + C+  AR+L L   + V         +         +    E+
Sbjct: 77  ATIAGLHDHRMAIVRRKACAAAARKLGLDRLLVVGKGYEGAEPTMAMLAGERCRRHCFEA 136

Query: 122 LIAALYLDGGIEVAGTFVDK 141
           +  A+Y D G ++       
Sbjct: 137 VWGAIYEDAGFQLGPMKKVY 156


>gi|321456672|gb|EFX67773.1| hypothetical protein DAPPUDRAFT_115150 [Daphnia pulex]
          Length = 228

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64
              +EK IGY F N+ LL +A+THSS  ++   ESY   E++GDR+LG  ++  +  +  
Sbjct: 26  LEEVEKTIGYIFKNKLLLIQAMTHSSYKNNCLTESYNEQEWIGDRVLGFEMAKFVSLNCQ 85

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
                  S  F +L S E  + +     +   I++  + 
Sbjct: 86  D-TVDAKSATFATLTSNEFWAVLTVRHGIHKHIKLCDNN 123


>gi|82268346|sp|Q4SS66|TRBP2_TETNG RecName: Full=RISC-loading complex subunit tarbp2
 gi|47222849|emb|CAF96516.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 345

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 140 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 198

Query: 216 AAEVLKRE 223
           AA++L R 
Sbjct: 199 AAKMLSRI 206


>gi|241718568|ref|XP_002403965.1| adenosine deaminase acting on RNA (adar)-1, putative [Ixodes
           scapularis]
 gi|215505279|gb|EEC14773.1| adenosine deaminase acting on RNA (adar)-1, putative [Ixodes
           scapularis]
          Length = 503

 Score = 61.1 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                     V  +  +    GP H+PRF  V  +     A+  D +K+ A+  AA    
Sbjct: 19  AFHEFGQMQHVEAKIDIVATDGPPHNPRFKAVAFLDKKPVAEAWDKTKKEAKHQAAELAF 78

Query: 221 KRE 223
           ++ 
Sbjct: 79  RKL 81


>gi|158186641|ref|NP_001103376.1| double-stranded RNA-binding protein Staufen homolog 1 isoform 1
           [Mus musculus]
 gi|123240382|emb|CAM17301.1| staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus]
          Length = 495

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP H   F   V + G    +G   SK+ +++ AA  VL++ 
Sbjct: 126 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 167



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 203 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 261

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 262 AAENMLEILG 271


>gi|123240384|emb|CAM17303.1| staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus]
          Length = 485

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP H   F   V + G    +G   SK+ +++ AA  VL++ 
Sbjct: 120 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 161



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 255

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 256 AAENMLEILG 265


>gi|51896012|gb|AAH82277.1| Stau1 protein [Mus musculus]
          Length = 576

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP H   F   V + G    +G   SK+ +++ AA  VL++ 
Sbjct: 207 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 248



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 284 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 342

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 343 AAENMLEILG 352


>gi|158186639|ref|NP_001103375.1| double-stranded RNA-binding protein Staufen homolog 1 isoform 2
           [Mus musculus]
 gi|14861636|gb|AAK73752.1|AF395842_1 staufen isoform I2 [Mus musculus]
 gi|12836618|dbj|BAB23736.1| unnamed protein product [Mus musculus]
 gi|15277960|gb|AAH12959.1| Staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus]
 gi|123240383|emb|CAM17302.1| staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus]
 gi|148674544|gb|EDL06491.1| staufen (RNA binding protein) homolog 1 (Drosophila), isoform CRA_a
           [Mus musculus]
          Length = 489

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP H   F   V + G    +G   SK+ +++ AA  VL++ 
Sbjct: 120 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 161



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 255

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 256 AAENMLEILG 265


>gi|400554|gb|AAA02759.1| double-stranded RNA-binding protein [Vaccinia virus]
          Length = 190

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 23/70 (32%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A        + +             GP + P F   V+I G    +    SKR A+ 
Sbjct: 113 WKGANPVTVINEYCQITRRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKN 172

Query: 214 VAAAEVLKRE 223
            AA   + + 
Sbjct: 173 NAAKLAVDKL 182


>gi|16758178|ref|NP_445888.1| staufen RNA binding protein homolog 1 isoform 1 [Rattus norvegicus]
 gi|9754866|gb|AAF98119.1|AF227200_1 staufen isoform Stau+I6 [Rattus norvegicus]
          Length = 495

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP H   F   V + G    +G   SK+ +++ AA  VL++ 
Sbjct: 126 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 167



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ 
Sbjct: 203 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGAGTNKKVAKRN 261

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 262 AAENMLEILG 271


>gi|158186644|ref|NP_001103377.1| staufen RNA binding protein homolog 1 isoform 2 [Rattus norvegicus]
 gi|9755163|gb|AAF98177.1|AF290989_1 staufen isoform Stau-I6 [Rattus norvegicus]
 gi|74353677|gb|AAI01859.1| Stau1 protein [Rattus norvegicus]
 gi|149042853|gb|EDL96427.1| staufen RNA binding protein homolog 1 (Drosophila) [Rattus
           norvegicus]
          Length = 489

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP H   F   V + G    +G   SK+ +++ AA  VL++ 
Sbjct: 120 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 161



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ 
Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGAGTNKKVAKRN 255

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 256 AAENMLEILG 265


>gi|51859122|gb|AAH81755.1| Stau1 protein [Rattus norvegicus]
          Length = 554

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP H   F   V + G    +G   SK+ +++ AA  VL++ 
Sbjct: 185 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 226



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ 
Sbjct: 262 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGAGTNKKVAKRN 320

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 321 AAENMLEILG 330


>gi|74219068|dbj|BAE26678.1| unnamed protein product [Mus musculus]
          Length = 592

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP H   F   V + G    +G   SK+ +++ AA  VL++ 
Sbjct: 223 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 264



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 300 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 358

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 359 AAENMLEILG 368


>gi|74214463|dbj|BAE31085.1| unnamed protein product [Mus musculus]
          Length = 489

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP H   F   V + G    +G   SK+ +++ AA  VL++ 
Sbjct: 120 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 161



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 255

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 256 AAENMLEILG 265


>gi|74204587|dbj|BAE35365.1| unnamed protein product [Mus musculus]
          Length = 587

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP H   F   V + G    +G   SK+ +++ AA  VL++ 
Sbjct: 218 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 259



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 295 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 353

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 354 AAENMLEILG 363


>gi|74198409|dbj|BAE39688.1| unnamed protein product [Mus musculus]
          Length = 577

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP H   F   V + G    +G   SK+ +++ AA  VL++ 
Sbjct: 208 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 249



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 285 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 343

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 344 AAENMLEILG 353


>gi|74199026|dbj|BAE30728.1| unnamed protein product [Mus musculus]
 gi|74220489|dbj|BAE31464.1| unnamed protein product [Mus musculus]
          Length = 485

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP H   F   V + G    +G   SK+ +++ AA  VL++ 
Sbjct: 120 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 161



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 255

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 256 AAENMLEILG 265


>gi|74198083|dbj|BAE35221.1| unnamed protein product [Mus musculus]
          Length = 575

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP H   F   V + G    +G   SK+ +++ AA  VL++ 
Sbjct: 206 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 247



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 283 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 341

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 342 AAENMLEILG 351


>gi|74145338|dbj|BAE36128.1| unnamed protein product [Mus musculus]
          Length = 583

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP H   F   V + G    +G   SK+ +++ AA  VL++ 
Sbjct: 214 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 255



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 291 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 349

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 350 AAENMLEILG 359


>gi|74137731|dbj|BAE24052.1| unnamed protein product [Mus musculus]
          Length = 579

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP H   F   V + G    +G   SK+ +++ AA  VL++ 
Sbjct: 210 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 251



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 287 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 345

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 346 AAENMLEILG 355


>gi|6755674|ref|NP_035620.1| double-stranded RNA-binding protein Staufen homolog 1 isoform 3
           [Mus musculus]
 gi|9789804|sp|Q9Z108|STAU1_MOUSE RecName: Full=Double-stranded RNA-binding protein Staufen homolog 1
 gi|4335945|gb|AAD17529.1| RNA-binding protein staufen [Mus musculus]
 gi|123240381|emb|CAM17300.1| staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus]
 gi|148674545|gb|EDL06492.1| staufen (RNA binding protein) homolog 1 (Drosophila), isoform CRA_b
           [Mus musculus]
          Length = 487

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP H   F   V + G    +G   SK+ +++ AA  VL++ 
Sbjct: 120 SGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQL 161



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 195 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 253

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 254 AAENMLEILG 263


>gi|126179439|ref|YP_001047404.1| ribonuclease III [Methanoculleus marisnigri JR1]
 gi|125862233|gb|ABN57422.1| RNAse III [Methanoculleus marisnigri JR1]
          Length = 154

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 7/149 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFN 61
            LE+RI Y+F  + LL++AL H S S+  +      E  + L  LGD +L  ++  LL  
Sbjct: 4   DLEERINYSFKQKDLLQRALLHRSRSNEERQKQKICEDQDALRTLGDAVLKTILCDLLMR 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                K      +          +++ R  DL   I V    R    +   ++ A+ +E+
Sbjct: 64  SGYETKGEITIKKSTIE-RRPFLAELGRRFDLQDKILVGEGARMQKHNEEPNVIAETLEA 122

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS 150
           +I A+YLDGG E A   V  +++    + 
Sbjct: 123 IIGAMYLDGGYESAKKAVSGWYEPYREEM 151


>gi|51342212|gb|AAU01256.1| MPXV-WRAIR046 [Monkeypox virus]
 gi|58220516|gb|AAW67804.1| MPXV-SL-046 [Monkeypox virus]
 gi|59858852|gb|AAX09147.1| MPXV-COP-046 [Monkeypox virus]
 gi|68448726|gb|AAY96849.1| double-stranded RNA binding protein [Monkeypox virus]
 gi|68449329|gb|AAY97449.1| double-stranded RNA binding protein [Monkeypox virus]
 gi|68449528|gb|AAY97647.1| double-stranded RNA binding protein [Monkeypox virus]
          Length = 153

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + +          + +             GP + P F   V+I G    +    SKR A+
Sbjct: 75  YWKGVNPVTVINEYCQITRRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAK 134

Query: 213 QVAAAEVLKRE 223
             AA   + + 
Sbjct: 135 NNAAKLAVDKL 145


>gi|17974965|ref|NP_536479.1| F3L [Monkeypox virus Zaire-96-I-16]
 gi|17529832|gb|AAL40510.1|AF380138_52 F3L [Monkeypox virus Zaire-96-I-16]
 gi|68448928|gb|AAY97050.1| double-stranded RNA binding protein [Monkeypox virus]
 gi|68449129|gb|AAY97250.1| double-stranded RNA binding protein [Monkeypox virus]
 gi|300872673|gb|ADK39075.1| double-stranded RNA binding protein [Monkeypox virus]
 gi|323098461|gb|ADX22699.1| double-stranded RNA binding protein [Monkeypox virus]
 gi|323098658|gb|ADX22895.1| double-stranded RNA binding protein [Monkeypox virus]
          Length = 153

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + +          + +             GP + P F   V+I G    +    SKR A+
Sbjct: 75  YWKGVNPVTVINEYCQITRRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAK 134

Query: 213 QVAAAEVLKRE 223
             AA   + + 
Sbjct: 135 NNAAKLAVDKL 145


>gi|27357042|gb|AAN86547.1| adenosine deaminase [Takifugu rubripes]
          Length = 750

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G    +GM  +K+ A+  AA + L+
Sbjct: 143 QYKLLSQTGPVHAPVFVMTVEVNGQ-IFEGMGPTKKKAKLNAAEKALR 189


>gi|74096351|ref|NP_001027865.1| adenosine deaminase ADAR2-b variant [Takifugu rubripes]
 gi|7798622|gb|AAF69765.1| double stranded RNA adenosine deaminase RED1B [Takifugu rubripes]
 gi|22506833|gb|AAM97656.1| adenosine deaminase ADAR2-b variant [Takifugu rubripes]
          Length = 698

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G    +GM  +K+ A+  AA + L+
Sbjct: 91  QYKLLSQTGPVHAPVFVMTVEVNGQ-IFEGMGPTKKKAKLNAAEKALR 137


>gi|47220235|emb|CAF99000.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 810

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G    +GM  +K+ A+  AA + L+
Sbjct: 192 QYKLLSQTGPVHAPVFVMTVEVNGQ-IFEGMGPTKKKAKLNAAEKALR 238


>gi|156374036|ref|XP_001629615.1| predicted protein [Nematostella vectensis]
 gi|156216619|gb|EDO37552.1| predicted protein [Nematostella vectensis]
          Length = 580

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               ++    E+++  + GP HD  F V V ++G    +G   SK+ A+  AA + L+
Sbjct: 1   MQLNEYKPGLEFRLVSQEGPPHDTTFVVAVTVNGQTY-EGKGSSKQRAKHDAAEKALQ 57



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               +   T           +HD  F   +E++G+    G   SK+ A+ VAA + L +
Sbjct: 113 MYLNELHPTQIDYQFEEGTSEHDK-FICNIELNGVEF-SGTGTSKKKAKVVAATKALAK 169


>gi|156340926|ref|XP_001620596.1| hypothetical protein NEMVEDRAFT_v1g222935 [Nematostella vectensis]
 gi|156205720|gb|EDO28496.1| predicted protein [Nematostella vectensis]
          Length = 171

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               ++    E+++  + GP HD  F V V ++G    +G   SK+ A+  AA + L+
Sbjct: 61  MQLNEYKPGLEFRLVSQEGPPHDTTFVVAVTVNGQTY-EGKGSSKQRAKHDAAEKALQ 117


>gi|290999955|ref|XP_002682545.1| predicted protein [Naegleria gruberi]
 gi|284096172|gb|EFC49801.1| predicted protein [Naegleria gruberi]
          Length = 339

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF-TVVVEISGLAPAQGMDCSK 208
             ++        Q     +        V ++     + RF TV V +      +G   +K
Sbjct: 250 MLQYFDPKTQLAQMVRTGEMHEHAHKTVQYKEVSKDEKRFVTVHVYVDNDVIGEGTGQTK 309

Query: 209 RAAEQVAAAEVLKR 222
           + AEQ AA + L +
Sbjct: 310 KIAEQKAAQDALNK 323


>gi|251764897|sp|B0V3F8|PRKRA_DANRE RecName: Full=Interferon-inducible double stranded RNA-dependent
           protein kinase activator A homolog
 gi|169146119|emb|CAQ15451.1| novel protein similar to H.sapiens PRKRA, protein kinase,
           interferon-inducible double stranded RNA dependent
           activator (PRKRA, zgc:162619) [Danio rerio]
          Length = 282

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE A  +    PEY V   +GP H   FT+   + GL    G   SK+ A + A
Sbjct: 99  NPVGILQELAMQRVWCLPEYVVFMETGPGHMKEFTIACRLEGLEE-TGSGSSKKLARRAA 157

Query: 216 AAEVLKRE 223
           A  ++ + 
Sbjct: 158 AENMIAKL 165


>gi|169146118|emb|CAQ15450.1| novel protein similar to H.sapiens PRKRA, protein kinase,
           interferon-inducible double stranded RNA dependent
           activator (PRKRA, zgc:162619) [Danio rerio]
          Length = 300

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE A  +    PEY V   +GP H   FT+   + GL    G   SK+ A + A
Sbjct: 117 NPVGILQELAMQRVWCLPEYVVFMETGPGHMKEFTIACRLEGLEE-TGSGSSKKLARRAA 175

Query: 216 AAEVLKRE 223
           A  ++ + 
Sbjct: 176 AENMIAKL 183


>gi|148985144|ref|ZP_01818383.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71]
 gi|147922589|gb|EDK73707.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71]
          Length = 79

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 1  MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
          M  L+ + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1  MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57 TLLFNH 62
            L+ +
Sbjct: 60 EYLYKN 65


>gi|148235737|ref|NP_001082830.1| interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Danio rerio]
 gi|134025033|gb|AAI35035.1| Zgc:162619 protein [Danio rerio]
          Length = 282

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE A  +    PEY V   +GP H   FT+   + GL    G   SK+ A + A
Sbjct: 99  NPVGILQELAMQRVWCLPEYVVFMETGPGHMKEFTIACRLEGLEE-TGSGSSKKLARRAA 157

Query: 216 AAEVLKRE 223
           A  ++ + 
Sbjct: 158 AENMIAKL 165


>gi|126341352|ref|XP_001373773.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 727

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F V VE++G    +G   +K+ A+  AA   LK
Sbjct: 123 QYKMVSQTGPVHAPVFAVAVEVNGFTF-EGTGPTKKKAKMRAAELALK 169



 Score = 36.1 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 1/25 (4%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           H   F + V + G    +G   SK+
Sbjct: 290 HAKSFVMAVRVDGRTF-EGSGRSKK 313


>gi|12045228|ref|NP_073039.1| ribonuclease III [Mycoplasma genitalium G37]
 gi|1350804|sp|P47607|RNC_MYCGE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|3844954|gb|AAC71594.1| ribonuclease III [Mycoplasma genitalium G37]
 gi|166078923|gb|ABY79541.1| ribonuclease III [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 262

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 3/103 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
           + +T  K +     N    EKA  H+S  + +++   SY+RLEFLGD ++  +++  LF 
Sbjct: 17  KLATFLKNLDIFPNNWEFFEKAFIHASYINEHEDVSESYDRLEFLGDALIDFVVAKKLFE 76

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
            +    EG L+     +V  E  +++  EL L  F+++S+   
Sbjct: 77  LYPKYNEGLLTRTKIEIVKGENLNRIGMELKLGDFVKLSNGAE 119


>gi|169858496|ref|XP_001835893.1| hypothetical protein CC1G_02981 [Coprinopsis cinerea okayama7#130]
 gi|116503063|gb|EAU85958.1| hypothetical protein CC1G_02981 [Coprinopsis cinerea okayama7#130]
          Length = 299

 Score = 60.7 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               A            +SGP H P + V   ++G    +G   S++ A++ AA +    
Sbjct: 235 MNQKAAQNGVHVTYPAEQSGPPHAPLWHVRCCLNGKEYGRGTGRSQKIAKEEAARQAWTA 294

Query: 223 EG 224
            G
Sbjct: 295 MG 296



 Score = 35.7 bits (80), Expect = 4.8,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 9/128 (7%)

Query: 19  NRSLLEKALTHSSISHSYQESYE------RLEFLGDRILGLLISTLLFNHFDSA-KEGEL 71
           +  LL    TH S+  +     E      RL  LG  +L ++++T  F+  + +    +L
Sbjct: 13  DVELLLDVFTHKSLRMTGAPLNEDYGDTDRLAELGAYVLQMVVATHWFHAKNPSLPADQL 72

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRK--DVCSFMTSIQADVVESLIAALYLD 129
           S R    +S  T         L + +R++    +     S       +     +     +
Sbjct: 73  SARIKESLSDTTVDTWMNAYGLKTKLRIAPSEMERSMNSSTEMRKVFETYVGAVYFRNRN 132

Query: 130 GGIEVAGT 137
           G  E+   
Sbjct: 133 GLKEIQQW 140


>gi|291222217|ref|XP_002731114.1| PREDICTED: Double-stranded RNA-binding protein Staufen homolog
           2-like [Saccoglossus kowalevskii]
          Length = 668

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                 +      L           P+YK+   SGP H   F V + ++          S
Sbjct: 66  QNMANPKEKTPMCLLNELARYNKTQPQYKLQDESGPAHQKTFNVSLTLNNQVY-DASGSS 124

Query: 208 KRAAEQVAAAEVLKREGI 225
            + A+  AA   L++ G+
Sbjct: 125 IKKAQHAAAEIALQKCGL 142



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P + +    G      F + V I G     G+  +K+ A++ 
Sbjct: 381 MNPVSRLVQIQQAKKEKEPVFTLLQERGQPRKREFIMQVTI-GSNQCTGIGPNKKMAKRA 439

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 440 AAEAMLQLLG 449



 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              +  +  +   ++V   SGP H   F     I G   A+     K+ +++ AAA+VL+
Sbjct: 285 CYESAHRRNLPISFEVINESGPPHMKTFITRCTI-GEYSAEAEGNGKKVSKKRAAAKVLE 343

Query: 222 REGIW 226
           +  + 
Sbjct: 344 QLKVL 348


>gi|1932815|gb|AAB51688.1| dsRNA adenosine deaminase [Xenopus laevis]
          Length = 1124

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 39/124 (31%)

Query: 100 SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT 159
             + +        ++        +A    + G E    +       R  K    +     
Sbjct: 371 FENGKWASDDIPEAMNTMNTADALAVTQEELGKEYPQAYEPVKELSRLDKLLACQEKNPV 430

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                         ++ +  +SGP HDPRF +   I G         SK+ A++ AA+  
Sbjct: 431 SGLLEFTHYCSQQCDFVLLNQSGPSHDPRFKIQAVIDGRHFPVAEASSKKTAKKDAASLA 490

Query: 220 LKRE 223
           L+  
Sbjct: 491 LRIL 494



 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                   +      K G   E+++  + GP HDP+FT  V+I        +  SK+ A+
Sbjct: 529 PCNKNPISVLMEHGQKSGSMCEFQLVQQEGPPHDPKFTYTVKIGNQTFPPVVANSKKMAK 588

Query: 213 QVAAAEVLKRE 223
           Q+AA   ++  
Sbjct: 589 QLAAEAAVREL 599


>gi|327282012|ref|XP_003225738.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A-like [Anolis carolinensis]
          Length = 329

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 1/139 (0%)

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
           C   A E+ +  F    +           S +     +  AAL +  G  V    V  + 
Sbjct: 73  CENAAGEVHMPIFTYKVTLGNVTGTGEGPSKKIAKHRAAEAALNIMKGNSVVCIAVPDHL 132

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
              A+   + + +    LQE A  K    PEY +   +GP H   FTV   I       G
Sbjct: 133 IPGAVNQAQNKTNPVGSLQELAIQKGWKLPEYSMAQETGPPHKREFTVTCRIE-AFVETG 191

Query: 204 MDCSKRAAEQVAAAEVLKR 222
           M  SK+ A++ AA ++L++
Sbjct: 192 MGTSKKLAKRNAAEKLLRK 210



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 33/116 (28%), Gaps = 1/116 (0%)

Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW 164
                    I   ++  L  +      +          W +              +L   
Sbjct: 1   MCHLVCCCHIVTSLIYHLYFSPNSKNPLAGCSRTKSLMWCRLEEIVASKPGKTPIQLLHE 60

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              K  + P Y+    +G  H P FT  V + G     G   SK+ A+  AA   L
Sbjct: 61  YGTKANLNPIYECENAAGEVHMPIFTYKVTL-GNVTGTGEGPSKKIAKHRAAEAAL 115


>gi|327264051|ref|XP_003216830.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 2
           [Anolis carolinensis]
          Length = 890

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +   A       E         
Sbjct: 324 AFGQLHKVLGMDPLPSKMPKKPKNENPIDYTVQIPPSTTYAIAPLKRPMEEDGEEKSPSK 383

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G+   +
Sbjct: 384 KKKKIQKKEEKAEPPQAMNALMKLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGITY-E 442

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 443 ASGPSKKTAKLHVAVKVLQDMGLPT 467



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 543 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 571


>gi|327264049|ref|XP_003216829.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 1
           [Anolis carolinensis]
          Length = 835

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +   A       E         
Sbjct: 324 AFGQLHKVLGMDPLPSKMPKKPKNENPIDYTVQIPPSTTYAIAPLKRPMEEDGEEKSPSK 383

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G+   +
Sbjct: 384 KKKKIQKKEEKAEPPQAMNALMKLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGITY-E 442

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 443 ASGPSKKTAKLHVAVKVLQDMGLPT 467



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 543 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 571


>gi|321463534|gb|EFX74549.1| hypothetical protein DAPPUDRAFT_324210 [Daphnia pulex]
          Length = 694

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I  +  D   E           Q   +    ++     L         + P+Y++T  SG
Sbjct: 62  IGCIEKDNQCESTDDTDFSMGLQDKSEQTGKKKTPM-CLVNELARHHKIQPQYRLTEESG 120

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P H   F V +++           S + A+  AA   LK+
Sbjct: 121 PAHQKTFVVNLKLGEEQY-SATGQSIKKAQHAAAELALKK 159



 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 67/221 (30%), Gaps = 5/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  + L  ++ +     +L   ++   S      E     +  GD  L  +     F + 
Sbjct: 187 VELNALAMKLNFQPVYTNLAPLSI--KSKMQEDSEQSPVCK--GDFRLNQVDQNERFLNA 242

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           D  ++   + +     S +       +    +     +     V       QA    +  
Sbjct: 243 DFQRQHTHTSQRFPSSSNQRYYFNRYQQAPVTHRVTLAVGHVFVTGEGLQPQAARHHAAQ 302

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            AL    G  +            +  +      +   L      K  +T E+ V   SGP
Sbjct: 303 QALEQLRGQTLIDKVQLDEAAVISEANTDSDLKSPVSLVHELALKLNLTVEFTVLNESGP 362

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            H   F V  ++ G    QG    K+ A++ AA  ++    
Sbjct: 363 PHMRNFIVQCKL-GEVTTQGEGNCKKVAKRKAAEIMIDELK 402


>gi|312079805|ref|XP_003142331.1| hypothetical protein LOAG_06747 [Loa loa]
 gi|307762503|gb|EFO21737.1| hypothetical protein LOAG_06747 [Loa loa]
          Length = 215

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 30/94 (31%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
              G            +     +  +  +               +  EYK+   SGP H 
Sbjct: 24  MWWGQSFTEQEVSPTKYVYNYSQMDENHQRTPMCRIAELARYNKIRHEYKLMDESGPAHK 83

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            +FTV + ++      G   S + A+Q AA   L
Sbjct: 84  KQFTVSLVLTPDQVFYGKGASIKKAQQSAAETAL 117


>gi|72157362|ref|XP_797998.1| PREDICTED: similar to MGC53736 protein [Strongylocentrotus
           purpuratus]
 gi|115963208|ref|XP_001187016.1| PREDICTED: similar to MGC53736 protein [Strongylocentrotus
           purpuratus]
          Length = 306

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           VTP Y    + G  H P+FT+    +G     G   SK+ A+Q AA +VL++  I
Sbjct: 20  VTPVYDTIGQEGASHQPKFTIRCT-AGDVVGNGQGPSKKVAKQSAAEDVLQQLDI 73



 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +   ELQE         PEY+    SGP H+ RF + V +      QG+D SKR A++ 
Sbjct: 90  DNPVGELQELVTCMGWRKPEYEALEESGPPHNRRFVISVSVD-KYKEQGVDQSKRLAKRA 148

Query: 215 AAAEVLKRE 223
           AA+ +L+  
Sbjct: 149 AASAMLEVL 157


>gi|229025290|ref|ZP_04181710.1| Ribonuclease 3 [Bacillus cereus AH1272]
 gi|228736043|gb|EEL86618.1| Ribonuclease 3 [Bacillus cereus AH1272]
          Length = 163

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 1/145 (0%)

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGEL+    ++V   +  + A EL   S + +             ++ ADV E+ I A
Sbjct: 1   MSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGA 60

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LYLD G+E    F+ +    +  +       D K++LQE          EY++    GP 
Sbjct: 61  LYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKGPA 120

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           H+  F   V ++ +A   G   SK+
Sbjct: 121 HNREFVSRVTLNNVALGLGSGKSKK 145


>gi|255660287|ref|ZP_05405696.1| ribonuclease III [Mycoplasma genitalium G37]
          Length = 271

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 3/103 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
           + +T  K +     N    EKA  H+S  + +++   SY+RLEFLGD ++  +++  LF 
Sbjct: 26  KLATFLKNLDIFPNNWEFFEKAFIHASYINEHEDVSESYDRLEFLGDALIDFVVAKKLFE 85

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
            +    EG L+     +V  E  +++  EL L  F+++S+   
Sbjct: 86  LYPKYNEGLLTRTKIEIVKGENLNRIGMELKLGDFVKLSNGAE 128


>gi|108802827|gb|ABG21364.1| eukaryotic translation initiation factor 2 alpha kinase 2
           [Mesocricetus auratus]
          Length = 473

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              H K  VT  YK  F +GP HD RFT  V I G    +    +K+ A+  AA   +  
Sbjct: 14  NKYHQKHRVTITYKHLFTTGPPHDRRFTFQVIIDGEEFPEAEGKTKQEAKNAAAKLAVDT 73

Query: 223 EG 224
             
Sbjct: 74  LN 75



 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            RF     I       G   +K+ A+Q+AA E  ++ 
Sbjct: 122 QRFCYKCIIGLKTYGIGSGATKQEAKQLAAKEAYQKL 158


>gi|307108113|gb|EFN56354.1| hypothetical protein CHLNCDRAFT_144841 [Chlorella variabilis]
          Length = 229

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           S  R   L++R+GY F+N  LL  AL HSS +         + ++GD  + L+++  +  
Sbjct: 61  SKERIHELQERLGYRFSNLYLLRLALIHSSAA--PTTHNSIMAWIGDAAMYLVVAEEVAA 118

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV-CSFMTSIQADVVE 120
               A  G+LS    +L+    C + A  L L+ ++ +   +R        +++ A++ E
Sbjct: 119 ALGYAPIGQLSEVRKTLIGRAMCEKYAAHLGLSEYLVLGKSVRIQNAGVASSNMLAELFE 178

Query: 121 SLIAALYLDGGIEVAGTFV 139
           +++ A+YLDG ++      
Sbjct: 179 AVMGAVYLDGDLDAVRRCY 197


>gi|327263959|ref|XP_003216784.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Anolis
           carolinensis]
          Length = 383

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 179 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 237

Query: 216 AAEVLKRE 223
           AA++L R 
Sbjct: 238 AAKMLVRI 245


>gi|302661784|ref|XP_003022555.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517]
 gi|291186507|gb|EFE41937.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517]
          Length = 1468

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             S +E  I Y+F  ++LL  +L+H S +     +Y+RLEFLGD IL  +++  LF     
Sbjct: 1186 LSKIEPLIDYSFTKKALLAASLSHPS-NPISGMTYQRLEFLGDSILDNIVTRALFRCKRE 1244

Query: 66   AKEGELSVRFNSLVSAETCSQVARE 90
                ++ +   +LV+A+  + +   
Sbjct: 1245 IPHQDMHLIRTALVNADFLAFLCMN 1269



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F N  L+  A+T +S       +Y+RLEFLGD  L L  S  L        EG LS + +
Sbjct: 1011 FQNIQLVLTAITATSAREDT--NYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKD 1068

Query: 77   SLVSAETCSQVARELDLASFIRVSS 101
            S+VS     + A +  L  FI  + 
Sbjct: 1069 SIVSNSRLWKAAVDTGLDQFILTTC 1093


>gi|156387816|ref|XP_001634398.1| predicted protein [Nematostella vectensis]
 gi|156221481|gb|EDO42335.1| predicted protein [Nematostella vectensis]
          Length = 118

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           + G+  +++     G  H+  FT+  + +G     G   SK+ A+Q AA+  L++  
Sbjct: 45  QMGIKVDFEQVSAVGMPHNQTFTINCK-AGDFTGIGTGPSKKKAKQNAASATLEKIK 100


>gi|326921558|ref|XP_003207024.1| PREDICTED: double-stranded RNA-specific editase B2-like [Meleagris
           gallopavo]
          Length = 720

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
                Q   K   +    K  L +    K     +YK+  ++GP H P F V VE++GL 
Sbjct: 84  HFCKLQLIWKKVSWSVTPKNALVQLHELK--PGLQYKMVSQTGPVHAPVFAVAVEVNGLT 141

Query: 200 PAQGMDCSKRAAEQVAAAEVLK 221
             +G   +K+ A+  AA   LK
Sbjct: 142 F-EGTGPTKKKAKMRAAELALK 162



 Score = 36.4 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/85 (10%), Positives = 24/85 (28%), Gaps = 1/85 (1%)

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +     G  +  T       ++       + +++       +          ++      
Sbjct: 223 STAYRHGRLLCHTLDLMGHSKQNRHKMACKAESEKNPVVLLNELRSGLRYVCLSETVEKQ 282

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           H   F + V + G    +G   SK+
Sbjct: 283 HIKSFVMAVRVDGRTF-EGSGRSKK 306


>gi|302502160|ref|XP_003013071.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371]
 gi|291176633|gb|EFE32431.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371]
          Length = 1490

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             S +E  I Y+F  ++LL  +L+H S +     +Y+RLEFLGD IL  +++  LF     
Sbjct: 1208 LSKIEPLIDYSFTKKALLAASLSHPS-NPISGMTYQRLEFLGDSILDNIVTRALFRCKKE 1266

Query: 66   AKEGELSVRFNSLVSAETCSQVARE 90
                ++ +   +LV+A+  + +   
Sbjct: 1267 IPHQDMHLIRTALVNADFLAFLCMN 1291



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F N  L+  A+T +S       +Y+RLEFLGD  L L  S  L        EG LS + +
Sbjct: 1033 FQNIQLVLTAITATSAREDT--NYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKD 1090

Query: 77   SLVSAETCSQVARELDLASFIRVSS 101
            S+VS     + A +  L  FI  + 
Sbjct: 1091 SIVSNSRLWKAAVDTGLDQFILTTC 1115


>gi|291241464|ref|XP_002740631.1| PREDICTED: RNA-specific adenosine deaminase B1-like [Saccoglossus
           kowalevskii]
          Length = 713

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               +     ++K   +SGP H P F + VE++G    +G+  +K+ A+  AA + L+
Sbjct: 99  MQLNEIRPGLQFKFVSQSGPVHAPTFVMSVEVNGQ-MFEGIGTTKKKAKLQAAEKALR 155



 Score = 36.4 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 53/208 (25%), Gaps = 13/208 (6%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLG----DRILGLLISTLL 59
           ++ + +   + + F ++S    A    +   S + + +  E +G       L      L 
Sbjct: 99  MQLNEIRPGLQFKFVSQSGPVHA---PTFVMSVEVNGQMFEGIGTTKKKAKLQAAEKALR 155

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                             +++++  S      D+  F    S           SI    +
Sbjct: 156 SFVQFPNASEAHRAMGRHIITSDFTSDAMDLSDVCLFNTFESSQMAAGKEIEMSITEQPM 215

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E  +                     +  L S    ++    L E                
Sbjct: 216 EEKVQTHNGTHQEIPPAALSTGPTLRTPLSSPPQGKNPIMLLNELRPGLKYE-----FVS 270

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            +G  H   F + V I G     G   +
Sbjct: 271 ETGESHAKNFVMSVVIDGQNF-TGSARN 297


>gi|317418804|emb|CBN80842.1| RISC-loading complex subunit tarbp2 [Dicentrarchus labrax]
          Length = 345

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 140 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGSGTSKKLAKRNA 198

Query: 216 AAEVLKRE 223
           AA++L R 
Sbjct: 199 AAKMLSRI 206


>gi|41053389|ref|NP_956291.1| RISC-loading complex subunit tarbp2 [Danio rerio]
 gi|82240186|sp|Q7SXR1|TRBP2_DANRE RecName: Full=RISC-loading complex subunit tarbp2
 gi|33311802|gb|AAH55390.1| TAR (HIV) RNA binding protein 2 [Danio rerio]
          Length = 346

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 139 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGSGTSKKLAKRNA 197

Query: 216 AAEVLKRE 223
           AA++L R 
Sbjct: 198 AAKMLSRI 205


>gi|156551920|ref|XP_001607288.1| PREDICTED: similar to GA15248-PA [Nasonia vitripennis]
          Length = 330

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 77/234 (32%), Gaps = 19/234 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERL-------------EFL--GDRI 50
                 R+   F +  LLE+A  H S     +E  +++             E +  G  I
Sbjct: 66  IYAFNNRLSEQF-DTDLLEQAFIHRSYVIREEEDQKKVGIEDPQLDLTDNREMIDEGREI 124

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           + L+I   L      A +  +      L+S    +  A  +     I  +    ++    
Sbjct: 125 VSLVIDNYLSQSLPLAPQECIYAFKQYLLSTPVLANTASGIGAKDLILSADSPLEEE--T 182

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
           + +    +  +L  ++ L+         +      + L       +    L +    +  
Sbjct: 183 IANTFYALTSALNRSVDLEHTGLFVRDILIAQLVAKDLMEIWCPEEPVEILNDILDREHR 242

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              E ++  ++G +   P + + V  +      G   +   AE++AA   L+R 
Sbjct: 243 ELAEPRIIAQNGVNTLLPVYNIAVYSNQEFLGSGFGETIEEAEKMAAINALQRM 296


>gi|148682396|gb|EDL14343.1| staufen (RNA binding protein) homolog 2 (Drosophila), isoform CRA_a
           [Mus musculus]
          Length = 370

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|148682397|gb|EDL14344.1| staufen (RNA binding protein) homolog 2 (Drosophila), isoform CRA_b
           [Mus musculus]
          Length = 402

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273



 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         + P+YK+   SGP H   F+V + +      +    S +
Sbjct: 1   MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59

Query: 210 AAEQVAAAEVL 220
            A+Q  A + L
Sbjct: 60  KAQQAVANKAL 70


>gi|16307507|gb|AAH10300.1| Stau2 protein [Mus musculus]
          Length = 533

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 269 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 327

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 328 AAEAMLLQLG 337



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 76  YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 136 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 194

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 195 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 236


>gi|162287083|ref|NP_001104742.1| double-stranded RNA-binding protein Staufen homolog 2 isoform 2
           [Mus musculus]
 gi|23507045|gb|AAN37929.1|AF459100_1 double-stranded RNA-binding protein Staufen2 short isoform [Mus
           musculus]
          Length = 538

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|19264083|gb|AAH25118.1| Stau2 protein [Mus musculus]
          Length = 479

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|12853295|dbj|BAB29708.1| unnamed protein product [Mus musculus]
          Length = 206

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 1   MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 59

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 60  AAEAMLLQLG 69


>gi|194018455|ref|NP_079579.2| double-stranded RNA-binding protein Staufen homolog 2 isoform 3
           [Mus musculus]
 gi|73919459|sp|Q8CJ67|STAU2_MOUSE RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2
 gi|23507043|gb|AAN37928.1|AF459099_1 double-stranded RNA-binding protein Staufen2 long isoform [Mus
           musculus]
          Length = 570

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273



 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         + P+YK+   SGP H   F+V + +      +    S +
Sbjct: 1   MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59

Query: 210 AAEQVAAAEVL 220
            A+Q  A + L
Sbjct: 60  KAQQAVANKAL 70


>gi|310689634|pdb|2L3J|A Chain A, The Solution Structure Of The Adar2 Dsrbm-Rna Complex
           Reveals A Sequence-Specific Read Out Of The Minor Groove
          Length = 236

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 21  QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 67



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 176 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 220


>gi|310689632|pdb|2L3C|A Chain A, Solution Structure Of Adar2 Dsrbm1 Bound To Lsl Rna
          Length = 74

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 21  QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 67


>gi|149742267|ref|XP_001489941.1| PREDICTED: similar to RNA-specific adenosine deaminase B1 [Equus
           caballus]
          Length = 833

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 226 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 272



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 381 YDFLSESGESHAKNFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 425


>gi|161377407|ref|NP_037026.2| double-stranded RNA-specific editase 1 isoform 1 [Rattus
           norvegicus]
 gi|149043657|gb|EDL97108.1| adenosine deaminase, RNA-specific, B1, isoform CRA_b [Rattus
           norvegicus]
          Length = 711

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|161377409|ref|NP_001104525.1| double-stranded RNA-specific editase 1 isoform 2 [Rattus
           norvegicus]
 gi|149043658|gb|EDL97109.1| adenosine deaminase, RNA-specific, B1, isoform CRA_c [Rattus
           norvegicus]
          Length = 701

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|161377411|ref|NP_001104526.1| double-stranded RNA-specific editase 1 isoform 3 [Rattus
           norvegicus]
 gi|149043659|gb|EDL97110.1| adenosine deaminase, RNA-specific, B1, isoform CRA_d [Rattus
           norvegicus]
          Length = 687

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 70  QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 116



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 225 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 269


>gi|161377413|ref|NP_001104527.1| double-stranded RNA-specific editase 1 isoform 4 [Rattus
           norvegicus]
 gi|149043660|gb|EDL97111.1| adenosine deaminase, RNA-specific, B1, isoform CRA_e [Rattus
           norvegicus]
          Length = 677

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 70  QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 116



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 225 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 269


>gi|149043656|gb|EDL97107.1| adenosine deaminase, RNA-specific, B1, isoform CRA_a [Rattus
           norvegicus]
          Length = 695

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 88  QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 134



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 243 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 287


>gi|148699868|gb|EDL31815.1| adenosine deaminase, RNA-specific, B1, isoform CRA_f [Mus musculus]
          Length = 707

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 100 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 146



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 255 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 299


>gi|148699867|gb|EDL31814.1| adenosine deaminase, RNA-specific, B1, isoform CRA_e [Mus musculus]
          Length = 717

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 100 QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 146



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 255 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 299


>gi|93278801|pdb|2B7T|A Chain A, Structure Of Adar2 Dsrbm1
          Length = 73

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 21  QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 67


>gi|13272337|gb|AAK17102.1|AF291049_1 RNA adenosine deaminase 2 [Mus musculus]
          Length = 701

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|67625743|ref|NP_570965.2| double-stranded RNA-specific editase 1 isoform 1 [Mus musculus]
 gi|15529488|gb|AAL01301.1|AF403106_1 adenosine deaminase [Mus musculus]
 gi|148699869|gb|EDL31816.1| adenosine deaminase, RNA-specific, B1, isoform CRA_g [Mus musculus]
 gi|183396845|gb|AAI65982.1| Adenosine deaminase, RNA-specific, B1 [synthetic construct]
          Length = 701

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|15529494|gb|AAL01304.1|AF403109_1 adenosine deaminase [Mus musculus]
 gi|148699864|gb|EDL31811.1| adenosine deaminase, RNA-specific, B1, isoform CRA_b [Mus musculus]
          Length = 687

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 70  QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 116



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 225 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 269


>gi|1657636|gb|AAB18134.1| RNA adenosine deaminase [Homo sapiens]
          Length = 711

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|15529492|gb|AAL01303.1|AF403108_1 adenosine deaminase [Mus musculus]
 gi|148699865|gb|EDL31812.1| adenosine deaminase, RNA-specific, B1, isoform CRA_c [Mus musculus]
          Length = 677

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 70  QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 116



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 225 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 269


>gi|21954727|gb|AAM83099.1|AF525421_1 adenosine deaminase ADAR2 [Mus musculus]
 gi|27357040|gb|AAN86546.1| adenosine deaminase [Mus musculus]
 gi|148699863|gb|EDL31810.1| adenosine deaminase, RNA-specific, B1, isoform CRA_a [Mus musculus]
          Length = 695

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 88  QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 134



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 243 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 287


>gi|74209845|dbj|BAE23623.1| unnamed protein product [Mus musculus]
          Length = 376

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|1710075|sp|P51400|RED1_RAT RecName: Full=Double-stranded RNA-specific editase 1; AltName:
           Full=RNA-editing deaminase 1; AltName: Full=RNA-editing
           enzyme 1; AltName: Full=dsRNA adenosine deaminase
 gi|1177853|gb|AAA96755.1| double-stranded RNA-specific editase [Rattus norvegicus]
 gi|1586827|prf||2204394A RNA-editing enzyme
          Length = 711

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|67625747|ref|NP_001020008.1| double-stranded RNA-specific editase 1 isoform 2 [Mus musculus]
 gi|68684375|sp|Q91ZS8|RED1_MOUSE RecName: Full=Double-stranded RNA-specific editase 1; AltName:
           Full=RNA-editing deaminase 1; AltName: Full=RNA-editing
           enzyme 1; AltName: Full=dsRNA adenosine deaminase
 gi|15529490|gb|AAL01302.1|AF403107_1 adenosine deaminase [Mus musculus]
 gi|74181126|dbj|BAE27830.1| unnamed protein product [Mus musculus]
 gi|74202480|dbj|BAE24831.1| unnamed protein product [Mus musculus]
 gi|148699866|gb|EDL31813.1| adenosine deaminase, RNA-specific, B1, isoform CRA_d [Mus musculus]
          Length = 711

 Score = 60.3 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|302412551|ref|XP_003004108.1| ribonuclease [Verticillium albo-atrum VaMs.102]
 gi|261356684|gb|EEY19112.1| ribonuclease [Verticillium albo-atrum VaMs.102]
          Length = 426

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 73/239 (30%), Gaps = 39/239 (16%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +  L     TH   +     +YERLE+LGD    ++ S+LLF  F     G+LS     L
Sbjct: 162 DPKLETAVFTH--YTVGPGLNYERLEWLGDAYAEIISSSLLFRTFGGFSSGKLSQLRELL 219

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY----LDGGIEV 134
           +      Q + +  L   +R   +++         +  DV ES +AA+      +G    
Sbjct: 220 ICNANLGQYSAQYGLVDRVRAPEEVKASKEK-WKKVPGDVFESYVAAVILSDPENGLQRA 278

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF-------------------GVTPEY 175
                  +      +        +         +                          
Sbjct: 279 GEWLKALFSMTIKHQISTISNKPEHRAVLEMGDQSLLPDKVLNAKVRLGQLIGAKGISLR 338

Query: 176 KVTFRSGPDHDPRFT-------VVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222
                SGP  D  F        V + + G         +G D +K+ A Q AA   L  
Sbjct: 339 YEDDISGPKFDK-FNKRLTVHGVNLYLDGWGEKNKWLGKGTDINKKEAGQKAAQMALDN 396


>gi|164657402|ref|XP_001729827.1| hypothetical protein MGL_2813 [Malassezia globosa CBS 7966]
 gi|159103721|gb|EDP42613.1| hypothetical protein MGL_2813 [Malassezia globosa CBS 7966]
          Length = 388

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 64/242 (26%), Gaps = 39/242 (16%)

Query: 21  SLLEKALTHSSIS----------------------HSYQESYERLEFLGDRILGLLISTL 58
           +LL  A TH S+                           +   +L  +G+ +LGLL S  
Sbjct: 88  ALLRVACTHPSVLSVQQTASSLPMSLQERQQVRELQETIQHNAQLSTIGNSLLGLLTSEY 147

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL--ASFIRVSSDLRKDVCSFMTSIQA 116
               +       L    ++     T + V  EL +      R        +         
Sbjct: 148 FHLKYPHLPTRVLKAFVSAYAGPSTLADVGAELGVLAQGVQRWDRTGASSITRRTPRGGT 207

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--------------RDAKTELQ 162
             V  L   +       +      +                           RD K  L 
Sbjct: 208 TSVPLLSKDVAAQSVRAIVAVLFQELGMPAVRGFVHSHLLSRRLDLASLLKFRDPKRVLS 267

Query: 163 EWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                     P+ ++   +G     P F V V    +   +G   S R AE  AA + L+
Sbjct: 268 STCKKYGKPAPQSRMLAETGRLSIHPVFVVGVYSGAIQLGEGTGSSIRMAEFRAAEDALR 327

Query: 222 RE 223
           R 
Sbjct: 328 RL 329


>gi|166295185|ref|NP_033345.2| RISC-loading complex subunit TARBP2 [Mus musculus]
 gi|12805141|gb|AAH02028.1| TAR (HIV) RNA binding protein 2 [Mus musculus]
 gi|148672020|gb|EDL03967.1| TAR (HIV) RNA binding protein 2, isoform CRA_a [Mus musculus]
          Length = 365

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
                  Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +  
Sbjct: 140 RSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE- 198

Query: 198 LAPAQGMDCSKRAAEQVAAAEVL 220
                G   SK+ A++ AAA++L
Sbjct: 199 RFIEIGSGTSKKLAKRNAAAKML 221


>gi|77917582|ref|NP_001030113.1| RISC-loading complex subunit TARBP2 [Rattus norvegicus]
 gi|123780849|sp|Q3SWU0|TRBP2_RAT RecName: Full=RISC-loading complex subunit TARBP2
 gi|74356245|gb|AAI04691.1| TAR (HIV-1) RNA binding protein 2 [Rattus norvegicus]
 gi|149031914|gb|EDL86826.1| TAR (HIV) RNA binding protein 2 [Rattus norvegicus]
          Length = 365

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
                  Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +  
Sbjct: 140 RSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE- 198

Query: 198 LAPAQGMDCSKRAAEQVAAAEVL 220
                G   SK+ A++ AAA++L
Sbjct: 199 RFIEIGSGTSKKLAKRNAAAKML 221


>gi|74188185|dbj|BAE25768.1| unnamed protein product [Mus musculus]
          Length = 274

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
                  Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +  
Sbjct: 49  RSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE- 107

Query: 198 LAPAQGMDCSKRAAEQVAAAEVL 220
                G   SK+ A++ AAA++L
Sbjct: 108 RFIEIGSGTSKKLAKRNAAAKML 130


>gi|3334379|sp|P97473|TRBP2_MOUSE RecName: Full=RISC-loading complex subunit TARBP2; AltName:
           Full=Protamine-1 RNA-binding protein; Short=PRM-1
           RNA-binding protein; AltName: Full=TAR RNA-binding
           protein 2
 gi|1737216|gb|AAB38885.1| protamine-1 RNA binding protein [Mus musculus]
          Length = 365

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
                  Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +  
Sbjct: 140 RSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE- 198

Query: 198 LAPAQGMDCSKRAAEQVAAAEVL 220
                G   SK+ A++ AAA++L
Sbjct: 199 RFIEIGSGTSKKLAKRNAAAKML 221


>gi|301777794|ref|XP_002924315.1| PREDICTED: double-stranded RNA-specific editase B2-like [Ailuropoda
           melanoleuca]
          Length = 1006

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA   L+
Sbjct: 441 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 487



 Score = 35.7 bits (80), Expect = 5.4,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 1/25 (4%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           H   F + V + G    +G   SK+
Sbjct: 569 HAKSFVMAVSVDGRTF-EGSGRSKK 592


>gi|281353109|gb|EFB28693.1| hypothetical protein PANDA_013628 [Ailuropoda melanoleuca]
          Length = 637

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA   L+
Sbjct: 78  QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 124



 Score = 35.7 bits (80), Expect = 5.4,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 1/25 (4%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           H   F + V + G    +G   SK+
Sbjct: 200 HAKSFVMAVSVDGRTF-EGSGRSKK 223


>gi|194227228|ref|XP_001917073.1| PREDICTED: similar to Double-stranded RNA-specific editase B2
           (dsRNA adenosine deaminase B2) (RNA-dependent adenosine
           deaminase 3) (RNA-editing deaminase 2) (RNA-editing
           enzyme 2) [Equus caballus]
          Length = 732

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA   L+
Sbjct: 140 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 186


>gi|149634773|ref|XP_001511395.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 786

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA   L+
Sbjct: 180 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 226


>gi|149060895|gb|EDM11505.1| rCG30397, isoform CRA_a [Rattus norvegicus]
          Length = 408

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 202 MNPISRLAQIQQARKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 261 AAEAMLLQLG 270



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 9   YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 68

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 69  MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 127

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 128 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 169


>gi|149060896|gb|EDM11506.1| rCG30397, isoform CRA_b [Rattus norvegicus]
 gi|149060897|gb|EDM11507.1| rCG30397, isoform CRA_b [Rattus norvegicus]
 gi|149060898|gb|EDM11508.1| rCG30397, isoform CRA_b [Rattus norvegicus]
 gi|149060899|gb|EDM11509.1| rCG30397, isoform CRA_b [Rattus norvegicus]
          Length = 467

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 202 MNPISRLAQIQQARKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 261 AAEAMLLQLG 270



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 9   YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 68

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 69  MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 127

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 128 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 169


>gi|149060900|gb|EDM11510.1| rCG30397, isoform CRA_c [Rattus norvegicus]
          Length = 224

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 18  MNPISRLAQIQQARKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 76

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 77  AAEAMLLQLG 86


>gi|55741784|ref|NP_001007151.1| double-stranded RNA-binding protein Staufen homolog 2 isoform SS
           [Rattus norvegicus]
 gi|47679379|gb|AAT36670.1| staufen2 spliceform SS [Rattus norvegicus]
 gi|52001197|gb|AAU21479.1| double-stranded RNA binding protein staufen 2 52 kDa isoform
           [Rattus norvegicus]
          Length = 480

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQARKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|47679381|gb|AAT36671.1| staufen2 spliceform SL [Rattus norvegicus]
 gi|52001195|gb|AAU21478.1| double-stranded RNA binding protein staufen 2 59 kDa isoform
           [Rattus norvegicus]
          Length = 539

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQARKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|51592098|ref|NP_604461.2| double-stranded RNA-binding protein Staufen homolog 2 isoform LS
           (B) [Rattus norvegicus]
 gi|47679383|gb|AAT36672.1| staufen2 spliceform LS [Rattus norvegicus]
 gi|55715910|gb|AAH85705.1| Stau2 protein [Rattus norvegicus]
          Length = 512

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQARKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273



 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         + P+YK+   SGP H   F+V + +      +    S +
Sbjct: 1   MANPKEKTPMCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59

Query: 210 AAEQVAAAEVL 220
            A+Q  A + L
Sbjct: 60  KAQQAVANKAL 70


>gi|73949198|ref|XP_544281.2| PREDICTED: similar to Double-stranded RNA-specific editase B2
           (dsRNA adenosine deaminase B2) (RNA dependent adenosine
           deaminase 3) (RNA editing deaminase 2) (RNA editing
           enzyme 2) [Canis familiaris]
          Length = 784

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA   L+
Sbjct: 188 QYRMVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 234



 Score = 34.9 bits (78), Expect = 9.1,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAE 212
              F + V + G    +G   SK+ A+
Sbjct: 345 AKGFVMAVSVDGRTF-EGSGRSKKLAK 370


>gi|73919460|sp|Q68SB1|STAU2_RAT RecName: Full=Double-stranded RNA-binding protein Staufen homolog
           2; Short=r-staufen protein
 gi|47679385|gb|AAT36673.1| staufen2 spliceform LL [Rattus norvegicus]
          Length = 571

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQARKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273



 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         + P+YK+   SGP H   F+V + +      +    S +
Sbjct: 1   MANPKEKTPMCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59

Query: 210 AAEQVAAAEVL 220
            A+Q  A + L
Sbjct: 60  KAQQAVANKAL 70


>gi|332810381|ref|XP_513841.3| PREDICTED: double-stranded RNA-specific adenosine deaminase [Pan
           troglodytes]
          Length = 931

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 222 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 270



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 291 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 350

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 351 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 385



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 452 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497


>gi|332220545|ref|XP_003259416.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
           3 [Nomascus leucogenys]
          Length = 1234

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 570 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 618



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 639 HYSTEKESEKTAESQIPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 698

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 699 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 733



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 781 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 826


>gi|332220543|ref|XP_003259415.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
           2 [Nomascus leucogenys]
          Length = 1253

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 570 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 618



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 639 HYSTEKESEKTAESQIPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 698

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 699 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 733



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 800 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 845


>gi|332220541|ref|XP_003259414.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
           1 [Nomascus leucogenys]
          Length = 1279

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 570 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 618



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 639 HYSTEKESEKTAESQIPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 698

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 699 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 733



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 800 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 845


>gi|311254196|ref|XP_003125793.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like,
           partial [Sus scrofa]
          Length = 1171

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 488 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 536



 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              K G + E+++  R GP HDP+F   V +           SK+AA+Q+AA E +K  
Sbjct: 593 CVHKLGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQLAAEEAMKAL 651



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 718 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 763


>gi|297663364|ref|XP_002810145.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 4 [Pongo abelii]
 gi|297663366|ref|XP_002810146.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 5 [Pongo abelii]
          Length = 931

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 222 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 270



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 291 HYSTEKESEKTAESQIPTPSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 350

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 351 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 385



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 452 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497


>gi|297663362|ref|XP_002810144.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 3 [Pongo abelii]
          Length = 1181

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 586 HYSTEKESEKTAESQIPTPSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 728 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 773


>gi|297663360|ref|XP_002810143.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 2 [Pongo abelii]
          Length = 1200

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 586 HYSTEKESEKTAESQIPTPSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792


>gi|297663358|ref|XP_002810142.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 1 [Pongo abelii]
          Length = 1226

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 586 HYSTEKESEKTAESQIPTPSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792


>gi|297280147|ref|XP_002801844.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 3 [Macaca mulatta]
          Length = 1180

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 516 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 564



 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 585 HYSTEKESEKTTESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 644

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 645 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 679



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 727 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 772


>gi|297280145|ref|XP_001111902.2| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 1 [Macaca mulatta]
          Length = 1199

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 516 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 564



 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 585 HYSTEKESEKTTESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 644

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 645 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 679



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 746 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 791


>gi|297280143|ref|XP_002801843.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 2 [Macaca mulatta]
          Length = 1225

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 516 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 564



 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 585 HYSTEKESEKTTESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 644

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 645 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 679



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 746 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 791


>gi|221044884|dbj|BAH14119.1| unnamed protein product [Homo sapiens]
          Length = 970

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792


>gi|194665306|ref|XP_581374.4| PREDICTED: adenosine deaminase, RNA-specific [Bos taurus]
 gi|297472608|ref|XP_002686059.1| PREDICTED: RNA adenosine deaminase-like [Bos taurus]
 gi|296489763|gb|DAA31876.1| RNA adenosine deaminase-like [Bos taurus]
          Length = 1149

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 466 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 514



 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              K G + E+++  R GP HDP+F   V +           SK+AA+Q+AA E +K  
Sbjct: 571 CVHKLGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQMAAEEAMKAL 629



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 696 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 741


>gi|313104303|sp|P55265|DSRAD_HUMAN RecName: Full=Double-stranded RNA-specific adenosine deaminase;
           Short=DRADA; AltName: Full=136 kDa double-stranded
           RNA-binding protein; Short=p136; AltName:
           Full=Interferon-inducible protein 4; Short=IFI-4;
           AltName: Full=K88DSRBP
 gi|55666219|emb|CAH71908.1| adenosine deaminase, RNA-specific [Homo sapiens]
 gi|55960913|emb|CAI16185.1| adenosine deaminase, RNA-specific [Homo sapiens]
 gi|55961273|emb|CAI17376.1| adenosine deaminase, RNA-specific [Homo sapiens]
          Length = 1226

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792


>gi|149020494|gb|EDL78299.1| interleukin enhancer binding factor 3, isoform CRA_a [Rattus
           norvegicus]
 gi|149020495|gb|EDL78300.1| interleukin enhancer binding factor 3, isoform CRA_a [Rattus
           norvegicus]
 gi|149020496|gb|EDL78301.1| interleukin enhancer binding factor 3, isoform CRA_a [Rattus
           norvegicus]
          Length = 910

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 339 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 398

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G    +
Sbjct: 399 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSTF-E 457

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 458 ASGPSKKTAKLHVAVKVLQDMGLPT 482



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 557 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 585


>gi|119573573|gb|EAW53188.1| adenosine deaminase, RNA-specific, isoform CRA_e [Homo sapiens]
          Length = 905

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 222 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 270



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 291 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 350

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 351 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 385



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 452 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497


>gi|119573569|gb|EAW53184.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens]
 gi|119573574|gb|EAW53189.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens]
          Length = 886

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 222 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 270



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 291 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 350

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 351 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 385



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 433 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 478


>gi|70166944|ref|NP_056655.2| double-stranded RNA-specific adenosine deaminase isoform b [Homo
           sapiens]
 gi|119573575|gb|EAW53190.1| adenosine deaminase, RNA-specific, isoform CRA_f [Homo sapiens]
          Length = 1200

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792


>gi|70167032|ref|NP_056656.2| double-stranded RNA-specific adenosine deaminase isoform c [Homo
           sapiens]
 gi|119573570|gb|EAW53185.1| adenosine deaminase, RNA-specific, isoform CRA_c [Homo sapiens]
          Length = 1181

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 728 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 773


>gi|62089368|dbj|BAD93128.1| adenosine deaminase, RNA-specific isoform ADAR-a variant [Homo
           sapiens]
          Length = 1244

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 535 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 583



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 604 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 663

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 664 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 698



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 765 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 810


>gi|70167113|ref|NP_001020278.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo
           sapiens]
 gi|301601658|ref|NP_001180424.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo
           sapiens]
 gi|55666218|emb|CAH71907.1| adenosine deaminase, RNA-specific [Homo sapiens]
 gi|55960911|emb|CAI16183.1| adenosine deaminase, RNA-specific [Homo sapiens]
 gi|55961272|emb|CAI17375.1| adenosine deaminase, RNA-specific [Homo sapiens]
 gi|119573568|gb|EAW53183.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens]
 gi|119573572|gb|EAW53187.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens]
          Length = 931

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 222 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 270



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 291 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 350

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 351 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 385



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 452 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497


>gi|2795789|gb|AAB97116.1| RNA adenosine deaminase [Homo sapiens]
          Length = 1200

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792


>gi|2795790|gb|AAB97117.1| RNA adenosine deaminase [Homo sapiens]
          Length = 1181

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 728 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 773


>gi|16758150|ref|NP_445864.1| interleukin enhancer-binding factor 3 [Rattus norvegicus]
 gi|6911241|gb|AAF31446.1|AF220102_1 interleukin enhancer binding factor 3 [Rattus norvegicus]
          Length = 910

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 339 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 398

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G    +
Sbjct: 399 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSTF-E 457

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 458 ASGPSKKTAKLHVAVKVLQDMGLPT 482



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 557 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 585


>gi|70166852|ref|NP_001102.2| double-stranded RNA-specific adenosine deaminase isoform a [Homo
           sapiens]
 gi|577170|gb|AAB06697.1| double-stranded RNA adenosine deaminase [Homo sapiens]
 gi|23398522|gb|AAH38227.1| Adenosine deaminase, RNA-specific [Homo sapiens]
 gi|119573571|gb|EAW53186.1| adenosine deaminase, RNA-specific, isoform CRA_d [Homo sapiens]
 gi|157928608|gb|ABW03600.1| adenosine deaminase, RNA-specific [synthetic construct]
 gi|157929250|gb|ABW03910.1| adenosine deaminase, RNA-specific [synthetic construct]
          Length = 1226

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792


>gi|915284|gb|AAC13782.1| p136 [Homo sapiens]
 gi|2795791|gb|AAB97118.1| RNA adenosine deaminase [Homo sapiens]
          Length = 1226

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792


>gi|34364836|emb|CAE45853.1| hypothetical protein [Homo sapiens]
          Length = 1278

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 548 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 596



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 617 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 676

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 677 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 711



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 778 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 823


>gi|31874703|emb|CAD98075.1| hypothetical protein [Homo sapiens]
          Length = 1257

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 548 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 596



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 617 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 676

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 677 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 711



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 778 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 823


>gi|12711291|emb|CAA67170.1| dsRNA adenosine deaminase [Homo sapiens]
          Length = 1221

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 512 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 560



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 581 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 640

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 641 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 675



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 742 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 787


>gi|2326526|emb|CAA55968.1| IFI-4 [Homo sapiens]
          Length = 1226

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 517 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 645

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 646 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792


>gi|2326524|emb|CAA55967.1| IFI-4 [Homo sapiens]
 gi|12711292|emb|CAA67169.1| dsRNA adenosine deaminase [Homo sapiens]
          Length = 931

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 222 QTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 270



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
               E       +        +  F   +          K G + E+++  + GP H+P+
Sbjct: 291 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPK 350

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 351 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 385



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 452 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497


>gi|9081981|gb|AAF82685.1|AF202445_1 dsRNA binding protein NFAR-2/MPP4 [Homo sapiens]
          Length = 709

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 139 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 198

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 199 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 257

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 258 ASGPSKKTAKLHVAVKVLQDMGLPT 282



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 357 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 385


>gi|47227654|emb|CAG09651.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 850

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 2/133 (1%)

Query: 93  LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                R  +            +   +  S+  +  L     +  +       Q +     
Sbjct: 443 CQKRFREDAGSDDRDFIKRMKVGLTLTCSVNNSFTLSTSCNLGPSEKHDKRFQPSKILDW 502

Query: 153 FRRDAKTELQE-WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              D    +       +     +Y++  +SGP H P FT+ V++ G    Q    SKR A
Sbjct: 503 RMMDPNHPMNALMRLNQIHPGLQYRLLSQSGPVHAPVFTMSVDVQGNTY-QATGNSKRTA 561

Query: 212 EQVAAAEVLKREG 224
           +   A + L+  G
Sbjct: 562 KLQVALKALQALG 574


>gi|332826415|ref|XP_003311808.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           [Pan troglodytes]
          Length = 474

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 210 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 268

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 269 AAEAMLLQLG 278



 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              SGP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 132 IKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 177


>gi|332240606|ref|XP_003269478.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           [Nomascus leucogenys]
          Length = 570

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 173 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         V P+YK+    GP H   F+V + +      +    S +
Sbjct: 1   MANPKEKTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59

Query: 210 AAEQVAAAEVL 220
            A+Q  A + L
Sbjct: 60  KAQQAVANKAL 70


>gi|311253723|ref|XP_003125644.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           2-like [Sus scrofa]
          Length = 477

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 327 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 385

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 386 AAEAMLLQLG 395



 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 2/195 (1%)

Query: 30  SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
            S + S    +E  E L   +        L   F   +          L           
Sbjct: 102 PSFTASTLTRWESSELLEHALPSGASDKALHLVFSPPRRPCSRYLCGLLPHLFQVFMYHC 161

Query: 90  ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149
            +    +++++    +      T   A    ++ A   L        +  +    +    
Sbjct: 162 PIPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSAQNGESGKEMDD 221

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                +   + + E A  +        V   SGP H   F   V + G   A+G   SK+
Sbjct: 222 DKDANKSEISLVFEIALKRNMPVSFE-VIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKK 279

Query: 210 AAEQVAAAEVLKREG 224
            +++ AA  VL+   
Sbjct: 280 LSKKRAATTVLQELK 294


>gi|301782463|ref|XP_002926647.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           2-like [Ailuropoda melanoleuca]
          Length = 576

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|296480591|gb|DAA22706.1| staufen homolog 2 [Bos taurus]
          Length = 384

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPEKSAQNCESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|296226706|ref|XP_002759046.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           isoform 3 [Callithrix jacchus]
          Length = 504

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 202 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 261 AAEAMLLQLG 270



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 9   YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 68

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 69  MKALQALQNEPIPEKSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 127

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 128 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 169


>gi|296226704|ref|XP_002759045.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           isoform 2 [Callithrix jacchus]
          Length = 538

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|296226702|ref|XP_002759044.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           isoform 1 [Callithrix jacchus]
          Length = 570

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         V P+YK+    GP H   F+V + +      +    S +
Sbjct: 1   MANPKEKTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59

Query: 210 AAEQVAAAEVL 220
            A+Q  A + L
Sbjct: 60  KAQQAVANKAL 70


>gi|291388131|ref|XP_002710684.1| PREDICTED: staufen homolog 2 isoform 2 [Oryctolagus cuniculus]
          Length = 504

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 202 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 261 AAEAMLLQLG 270



 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 9   YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 68

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 69  MKALQALQNEPIPEKSPQNGESGKEVDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 127

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 128 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 169


>gi|291388129|ref|XP_002710683.1| PREDICTED: staufen homolog 2 isoform 1 [Oryctolagus cuniculus]
          Length = 570

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKEVDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273



 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         V P+YK+   SGP H   F+V + +      +    S +
Sbjct: 1   MANPKEKTPMCLVNELARFNRVQPQYKLLNESGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59

Query: 210 AAEQVAAAEVL 220
            A+Q  A + L
Sbjct: 60  KAQQAVANKAL 70


>gi|281337840|gb|EFB13424.1| hypothetical protein PANDA_016331 [Ailuropoda melanoleuca]
          Length = 510

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273



 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         V P+YK+    GP H   F+V + +      +    S +
Sbjct: 1   MANPKEKTPMCLVNELARFNRVQPQYKLLKERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59

Query: 210 AAEQVAAAEVL 220
            A+Q  A + L
Sbjct: 60  KAQQAVANKAL 70


>gi|256419005|ref|NP_001157857.1| double-stranded RNA-binding protein Staufen homolog 2 isoform f
           [Homo sapiens]
          Length = 473

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 268 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 326

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 327 AAEAMLLQLG 336



 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 75  YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 134

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 135 MKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 194 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 235


>gi|256419001|ref|NP_001157855.1| double-stranded RNA-binding protein Staufen homolog 2 isoform d
           [Homo sapiens]
          Length = 398

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 134 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 192

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 193 AAEAMLLQLG 202



 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              SGP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 56  IKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 101


>gi|256418999|ref|NP_001157854.1| double-stranded RNA-binding protein Staufen homolog 2 isoform c
           [Homo sapiens]
          Length = 504

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 202 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 261 AAEAMLLQLG 270



 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 9   YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 68

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 69  MKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 127

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 128 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 169


>gi|256418997|ref|NP_001157853.1| double-stranded RNA-binding protein Staufen homolog 2 isoform b
           [Homo sapiens]
          Length = 538

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|256418995|ref|NP_001157852.1| double-stranded RNA-binding protein Staufen homolog 2 isoform a
           [Homo sapiens]
          Length = 570

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 173 MKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         V P+YK+    GP H   F+V + +      +    S +
Sbjct: 1   MANPKEKTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59

Query: 210 AAEQVAAAEVL 220
            A+Q  A + L
Sbjct: 60  KAQQAVANKAL 70


>gi|289807913|ref|ZP_06538542.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
          Typhi str. AG3]
          Length = 61

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 3/45 (6%)

Query: 1  MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEF 45
          M+ +  + L++++GY F ++ LL++ALTH S S    +  ERLEF
Sbjct: 20 MNPIVINRLQRKLGYTFNHQELLQQALTHRSAS---SKHNERLEF 61


>gi|332826413|ref|XP_003311807.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           [Pan troglodytes]
 gi|221044446|dbj|BAH13900.1| unnamed protein product [Homo sapiens]
          Length = 504

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 202 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 261 AAEAMLLQLG 270



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 9   YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 68

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 69  MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 127

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 128 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 169


>gi|221039638|dbj|BAH11582.1| unnamed protein product [Homo sapiens]
          Length = 390

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 286 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 344

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 345 AAEAMLLQLG 354



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 93  YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 152

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 153 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 211

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 212 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 253



 Score = 38.4 bits (87), Expect = 0.79,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             F+V + +      +    S + A+Q  A + L
Sbjct: 18  KMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 50


>gi|221039518|dbj|BAH11522.1| unnamed protein product [Homo sapiens]
          Length = 398

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 134 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 192

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 193 AAEAMLLQLG 202



 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              SGP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 56  IKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 101


>gi|256418993|ref|NP_055208.2| double-stranded RNA-binding protein Staufen homolog 2 isoform e
           [Homo sapiens]
 gi|256419003|ref|NP_001157856.1| double-stranded RNA-binding protein Staufen homolog 2 isoform e
           [Homo sapiens]
 gi|168270864|dbj|BAG10225.1| double-stranded RNA-binding protein Staufen homolog 2 [synthetic
           construct]
          Length = 479

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|157074142|ref|NP_001096783.1| double-stranded RNA-binding protein Staufen homolog 2 [Bos taurus]
 gi|151554636|gb|AAI49988.1| STAU2 protein [Bos taurus]
          Length = 538

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPEKSAQNCESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|149721312|ref|XP_001491884.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen
           homolog 2 [Equus caballus]
          Length = 569

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         V P+YK+    GP H   F+V + +      +    S +
Sbjct: 1   MANPKEKTPMCLVNELARFNRVQPQYKLLRERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59

Query: 210 AAEQVAAAEVL 220
            A+Q  A + L
Sbjct: 60  KAQQAVANKAL 70


>gi|119607409|gb|EAW87003.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_a
           [Homo sapiens]
          Length = 549

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 173 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         V P+YK+    GP H   F+V + +      +    S +
Sbjct: 1   MANPKEKTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59

Query: 210 AAEQVAAAEVL 220
            A+Q  A + L
Sbjct: 60  KAQQAVANKAL 70


>gi|114620490|ref|XP_519808.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           isoform 12 [Pan troglodytes]
          Length = 538

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A++ L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVASKAL 38


>gi|114620492|ref|XP_001165189.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 517

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A++ L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVASKAL 38


>gi|114620500|ref|XP_001165533.1| PREDICTED: hypothetical protein isoform 5 [Pan troglodytes]
 gi|114620502|ref|XP_001165569.1| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes]
 gi|114620504|ref|XP_001165598.1| PREDICTED: hypothetical protein isoform 7 [Pan troglodytes]
 gi|114620506|ref|XP_001165637.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           isoform 8 [Pan troglodytes]
 gi|114620508|ref|XP_001165719.1| PREDICTED: hypothetical protein isoform 11 [Pan troglodytes]
          Length = 479

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A++ L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVASKAL 38


>gi|114620510|ref|XP_001165689.1| PREDICTED: staufen homolog 2 isoform 10 [Pan troglodytes]
          Length = 485

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 280 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 338

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 339 AAEAMLLQLG 348



 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L+      F V P   V   SGP H   F   V + G   A+G   SK+ +++ AA  VL
Sbjct: 185 LKRNMPVSFEVYPIGPVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVL 243

Query: 221 KREG 224
           +   
Sbjct: 244 QELK 247



 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147



 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A++ L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVASKAL 38


>gi|114620488|ref|XP_001165116.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           isoform 1 [Pan troglodytes]
          Length = 570

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 173 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273



 Score = 48.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         V P+YK+    GP H   F+V + +      +    S +
Sbjct: 1   MANPKEKTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59

Query: 210 AAEQVAAAEVL 220
            A+Q  A++ L
Sbjct: 60  KAQQAVASKAL 70


>gi|114620494|ref|XP_001165466.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
 gi|114620496|ref|XP_001165497.1| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes]
 gi|114620498|ref|XP_001165668.1| PREDICTED: hypothetical protein isoform 9 [Pan troglodytes]
          Length = 511

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 173 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273



 Score = 48.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         V P+YK+    GP H   F+V + +      +    S +
Sbjct: 1   MANPKEKTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59

Query: 210 AAEQVAAAEVL 220
            A+Q  A++ L
Sbjct: 60  KAQQAVASKAL 70


>gi|297299584|ref|XP_001084686.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           isoform 4 [Macaca mulatta]
          Length = 570

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 50/163 (30%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +       +         +   + + E A  +        V   S
Sbjct: 173 MKALQALQNEPIPERSPQSGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         V P+YK+    GP H   F+V + +      +    S +
Sbjct: 1   MANPKEKTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59

Query: 210 AAEQVAAAEVL 220
            A+Q  A + L
Sbjct: 60  KAQQAVANKAL 70


>gi|23507041|gb|AAN37927.1|AF459098_1 double-stranded RNA-binding protein Staufen2 short isoform [Homo
           sapiens]
 gi|14249967|gb|AAH08369.1| STAU2 protein [Homo sapiens]
 gi|119607411|gb|EAW87005.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_c
           [Homo sapiens]
 gi|123999574|gb|ABM87331.1| staufen, RNA binding protein, homolog 2 (Drosophila) [synthetic
           construct]
 gi|157929178|gb|ABW03874.1| staufen, RNA binding protein, homolog 2 (Drosophila) [synthetic
           construct]
          Length = 538

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|73999250|ref|XP_849924.1| PREDICTED: similar to staufen, RNA binding protein, homolog 2
           isoform LL (A) isoform 2 [Canis familiaris]
          Length = 540

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 276 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 334

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 335 AAEAMLLQLG 344



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|73999252|ref|XP_535103.2| PREDICTED: similar to staufen homolog 2 isoform 1 [Canis
           familiaris]
          Length = 479

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|73999248|ref|XP_860148.1| PREDICTED: similar to staufen, RNA binding protein, homolog 2
           isoform LL (A) isoform 3 [Canis familiaris]
          Length = 544

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 280 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 338

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 339 AAEAMLLQLG 348



 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 52/168 (30%), Gaps = 6/168 (3%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY-----K 176
           + A   L        +  +    +         +   + + E A  +            +
Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVFLSIQ 200

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 201 VIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 247



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|68533083|dbj|BAE06096.1| STAU2 variant protein [Homo sapiens]
          Length = 490

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 285 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 343

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 344 AAEAMLLQLG 353



 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 92  YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 151

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 152 MKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 210

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 211 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 252



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 16  NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 49


>gi|207080126|ref|NP_001128815.1| DKFZP469K0112 protein [Pongo abelii]
 gi|55729500|emb|CAH91481.1| hypothetical protein [Pongo abelii]
          Length = 479

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|197101215|ref|NP_001124896.1| double-stranded RNA-binding protein Staufen homolog 2 [Pongo
           abelii]
 gi|55726277|emb|CAH89910.1| hypothetical protein [Pongo abelii]
          Length = 491

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 286 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 344

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 345 AAEAMLLQLG 354



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 93  YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 152

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 153 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 211

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 212 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 253



 Score = 38.4 bits (87), Expect = 0.79,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             F+V + +      +    S + A+Q  A + L
Sbjct: 18  KMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 50


>gi|50949968|emb|CAH10527.1| hypothetical protein [Homo sapiens]
          Length = 314

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 109 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 167

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 168 AAEAMLLQLG 177



 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              SGP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 31  IKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 76


>gi|6634457|emb|CAB64341.1| 39k3 protein [Homo sapiens]
 gi|83404956|gb|AAI10448.1| Staufen, RNA binding protein, homolog 2 (Drosophila) [Homo sapiens]
 gi|119607412|gb|EAW87006.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_d
           [Homo sapiens]
 gi|189054410|dbj|BAG37183.1| unnamed protein product [Homo sapiens]
          Length = 479

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|7022914|dbj|BAA91766.1| unnamed protein product [Homo sapiens]
 gi|10435197|dbj|BAB14522.1| unnamed protein product [Homo sapiens]
          Length = 206

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 1   MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 59

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 60  AAEAMLLQLG 69


>gi|73919458|sp|Q9NUL3|STAU2_HUMAN RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2
 gi|23507039|gb|AAN37926.1|AF459097_1 double-stranded RNA-binding protein Staufen2 long isoform [Homo
           sapiens]
 gi|7023858|dbj|BAA92111.1| unnamed protein product [Homo sapiens]
 gi|119607410|gb|EAW87004.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_b
           [Homo sapiens]
 gi|119607413|gb|EAW87007.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_b
           [Homo sapiens]
          Length = 570

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 173 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         V P+YK+    GP H   F+V + +      +    S +
Sbjct: 1   MANPKEKTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59

Query: 210 AAEQVAAAEVL 220
            A+Q  A + L
Sbjct: 60  KAQQAVANKAL 70


>gi|9081983|gb|AAF82687.1| dsRNA binding protein TCP-80 isoform [Homo sapiens]
          Length = 576

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 139 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 198

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 199 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 257

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 258 ASGPSKKTAKLHVAVKVLQDMGLPT 282



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 357 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 385


>gi|73986756|ref|XP_868127.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 5 [Canis familiaris]
          Length = 631

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 61  AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 120

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 121 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 179

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 180 ASGPSKKTAKLHVAVKVLQDMGLPT 204



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 279 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 307


>gi|9714272|emb|CAC01407.1| double stranded RNA binding nuclear protein, ILF3 [Homo sapiens]
          Length = 591

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 23  AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 82

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 83  KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 141

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 142 ASGPSKKTAKLHVAVKVLQDMGLPT 166



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 241 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 269


>gi|327262381|ref|XP_003216003.1| PREDICTED: interferon-induced, double-stranded RNA-activated
           protein kinase-like [Anolis carolinensis]
          Length = 439

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + GPDH P F+   +I G     G   +K  A+  AA    ++ 
Sbjct: 136 SKDGPDHKPVFSQSCKIDGEILGVGTGNNKNIAKFNAAKMAYEKL 180



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 2/76 (2%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDPRFTVVVEISGLAPAQGMDCS 207
                RD    + +          + +       GP HD  FTV V+I  +   Q    +
Sbjct: 1   MAANHRDPHVCMAKLHEYCQRNRLQLEYLELDIRGPPHDRIFTVAVQIDKIQYRQCEGKT 60

Query: 208 KRAAEQVAAAEVLKRE 223
           K+ A+  AA    +  
Sbjct: 61  KKEAKAHAAVLAWESI 76


>gi|326485005|gb|EGE09015.1| dicer-like protein 2 [Trichophyton equinum CBS 127.97]
          Length = 1417

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            S +E  I Y+F  ++LL  +L+H S +   + +Y+RLEFLGD IL  +++  LF      
Sbjct: 1136 SKIEPLIDYSFTKKALLATSLSHPS-NLISRMTYQRLEFLGDSILDNIVTRALFRCKKEI 1194

Query: 67   KEGELSVRFNSLVSAETCSQVARE 90
               ++ +   +LV+A+  + +   
Sbjct: 1195 PHQDMHLIRTALVNADFLAFLCMN 1218



 Score = 43.0 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 34/72 (47%)

Query: 30   SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
            SS S     +Y+RLEFLGD  L L  S  L        EG LS + +S+VS     + A 
Sbjct: 971  SSTSAREDTNYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKDSIVSNSRLWKAAV 1030

Query: 90   ELDLASFIRVSS 101
            +  L  FI  + 
Sbjct: 1031 DTGLDQFILTTC 1042


>gi|326475978|gb|EGD99987.1| hypothetical protein TESG_07315 [Trichophyton tonsurans CBS 112818]
          Length = 1435

 Score = 59.9 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            S +E  I Y+F  ++LL  +L+H S +   + +Y+RLEFLGD IL  +++  LF      
Sbjct: 1154 SKIEPLIDYSFTKKALLATSLSHPS-NLISRMTYQRLEFLGDSILDNIVTRALFRCKKEI 1212

Query: 67   KEGELSVRFNSLVSAETCSQVARE 90
               ++ +   +LV+A+  + +   
Sbjct: 1213 PHQDMHLIRTALVNADFLAFLCMN 1236



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F N  L+  A+T +S       +Y+RLEFLGD  L L  S  L        EG LS + +
Sbjct: 978  FQNIQLVLTAITATSAREDT--NYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKD 1035

Query: 77   SLVSAETCSQVARELDLASFIRVSS 101
            S+VS     + A +  L  FI  + 
Sbjct: 1036 SIVSNSRLWKAAVDTGLDQFILTTC 1060


>gi|213408739|ref|XP_002175140.1| mitochondrial ribosomal protein subunit L3 [Schizosaccharomyces
           japonicus yFS275]
 gi|212003187|gb|EEB08847.1| mitochondrial ribosomal protein subunit L3 [Schizosaccharomyces
           japonicus yFS275]
          Length = 322

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 22/237 (9%)

Query: 4   LRYSTLEKRIGY--AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           ++  TL+KR+    +F NR+L  +AL   S       +   L  +G  +  L     +  
Sbjct: 48  VKIYTLKKRLRLLESFPNRTL-ARALIDKSFPTHISNTNSLLWPIGRVLRDLYTLEYIKT 106

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV-------------- 107
            +    E  ++V  + L      +Q+A    L +  +  + +                  
Sbjct: 107 KYPRLPEEGVAVLKDGLAGTAVLNQLAAMFGLETIGKDENLVDGMGKIIYSRVPAESFRQ 166

Query: 108 CSFMTSIQADVVESLIA----ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
                  +A     L       ++                +     +    +  K +L+ 
Sbjct: 167 GRESYKSEAVARTILSILAGVYIHEGNAAARLFVQNFMLSRYLPPDTLMLFQKPKQQLRA 226

Query: 164 WAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                    P Y +   +G    +P F V V   G    QG   S + ++  AA   
Sbjct: 227 LCRRLGVSKPVYYLEAETGRKSREPVFVVGVYADGERIGQGQASSLKLSQSQAAHNA 283


>gi|62512127|sp|Q9JIL3|ILF3_RAT RecName: Full=Interleukin enhancer-binding factor 3
          Length = 897

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G    +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSTF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|532315|gb|AAA20994.1| NF90 protein [Homo sapiens]
          Length = 671

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 327 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 386

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 387 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 445

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 446 ASGPSKKTAKLHVAVKVLQDMGLPT 470



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 549 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 577


>gi|195037815|ref|XP_001990356.1| GH18282 [Drosophila grimshawi]
 gi|193894552|gb|EDV93418.1| GH18282 [Drosophila grimshawi]
          Length = 833

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAA 211
             +     L E         P+Y +   SGP H   F   VEI+G +        +K+ A
Sbjct: 756 QDKHPVCVLNELTSKNRWTPPQYTLRGDSGPSHSRMFLFSVEINGQSYTPAQSCNNKKEA 815

Query: 212 EQVAAAEVLKREGIW 226
           +  AA   L+  GI 
Sbjct: 816 KMNAAKLCLRALGIL 830


>gi|119604541|gb|EAW84135.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_e [Homo
           sapiens]
          Length = 765

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|5006602|gb|AAD37575.1|AF141870_1 translational control protein 80 [Homo sapiens]
          Length = 764

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|332112807|gb|AEE02020.1| NF110b [Homo sapiens]
          Length = 898

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576


>gi|332253325|ref|XP_003275796.1| PREDICTED: LOW QUALITY PROTEIN: interleukin enhancer-binding factor
           3-like [Nomascus leucogenys]
          Length = 898

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576


>gi|194376558|dbj|BAG57425.1| unnamed protein product [Homo sapiens]
          Length = 506

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 130 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 189

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 190 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 248

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 249 ASGPSKKTAKLHVAVKVLQDMGLPT 273



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 348 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 376


>gi|212549553|ref|NP_060090.2| interleukin enhancer-binding factor 3 isoform d [Homo sapiens]
 gi|119604538|gb|EAW84132.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_b [Homo
           sapiens]
 gi|261859362|dbj|BAI46203.1| interleukin enhancer binding factor 3, 90kDa [synthetic construct]
          Length = 898

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576


>gi|114675419|ref|XP_512380.2| PREDICTED: interleukin enhancer binding factor 3 isoform 12 [Pan
           troglodytes]
          Length = 895

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 323 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 382

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 383 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 441

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 442 ASGPSKKTAKLHVAVKVLQDMGLPT 466



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 545 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 573


>gi|114675397|ref|XP_001166471.1| PREDICTED: interleukin enhancer binding factor 3 isoform 7 [Pan
           troglodytes]
 gi|114675399|ref|XP_001166503.1| PREDICTED: interleukin enhancer binding factor 3 isoform 8 [Pan
           troglodytes]
 gi|114675401|ref|XP_001166614.1| PREDICTED: interleukin enhancer-binding factor 3 isoform 11 [Pan
           troglodytes]
          Length = 898

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576


>gi|73986772|ref|XP_854061.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 2 [Canis familiaris]
          Length = 896

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|73986766|ref|XP_868145.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 10 [Canis familiaris]
          Length = 845

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576


>gi|73986774|ref|XP_542066.2| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 1 [Canis familiaris]
          Length = 900

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576


>gi|73986764|ref|XP_868141.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 9 [Canis familiaris]
          Length = 874

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 304 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 363

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 364 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 422

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 423 ASGPSKKTAKLHVAVKVLQDMGLPT 447



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 522 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 550


>gi|73986768|ref|XP_868151.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 11 [Canis familiaris]
          Length = 876

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 306 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 365

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 366 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 424

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 425 ASGPSKKTAKLHVAVKVLQDMGLPT 449



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 524 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 552


>gi|301772006|ref|XP_002921413.1| PREDICTED: interleukin enhancer-binding factor 3-like [Ailuropoda
           melanoleuca]
          Length = 897

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 323 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 382

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 383 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 441

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 442 ASGPSKKTAKLHVAVKVLQDMGLPT 466



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 545 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 573


>gi|290463410|sp|Q6DD04|ILF3B_XENLA RecName: Full=Interleukin enhancer-binding factor 3-B; AltName:
           Full=Double-stranded RNA-binding protein 4F.2;
           Short=DsRNA-binding protein 4F.2
          Length = 898

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
              +         +     +YK+  ++GP H P FT+ VE+      +    SK+ A+  
Sbjct: 399 EPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDDKTF-EASGPSKKTAKLH 457

Query: 215 AAAEVLKREGIWT 227
            A +VL+  G+ T
Sbjct: 458 VAVKVLQDMGLPT 470



 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +G  HD RF + VE+ G+   QG   +K+ A+  AA   L++ 
Sbjct: 541 ISETGGSHDKRFIMEVEVDGVKF-QGNGSNKKVAKAYAALSALEKL 585


>gi|281337392|gb|EFB12976.1| hypothetical protein PANDA_010307 [Ailuropoda melanoleuca]
          Length = 896

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|301171314|ref|NP_001180330.1| interleukin enhancer-binding factor 3-B [Xenopus laevis]
 gi|50414914|gb|AAH77828.1| Unknown (protein for MGC:80491) [Xenopus laevis]
          Length = 698

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
              +         +     +YK+  ++GP H P FT+ VE+      +    SK+ A+  
Sbjct: 399 EPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDDKTF-EASGPSKKTAKLH 457

Query: 215 AAAEVLKREGIWT 227
            A +VL+  G+ T
Sbjct: 458 VAVKVLQDMGLPT 470



 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +G  HD RF + VE+ G+   QG   +K+ A+  AA   L++ 
Sbjct: 541 ISETGGSHDKRFIMEVEVDGVKF-QGNGSNKKVAKAYAALSALEKL 585


>gi|5762315|gb|AAD51099.1| nuclear factor associated with dsRNA NFAR-2 [Homo sapiens]
          Length = 894

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|29126828|gb|AAH47984.1| LOC398578 protein [Xenopus laevis]
          Length = 854

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
              +         +     +YK+  ++GP H P FT+ VE+      +    SK+ A+  
Sbjct: 389 EPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDDKTF-EASGPSKKTAKLH 447

Query: 215 AAAEVLKREGIWT 227
            A +VL+  G+ T
Sbjct: 448 VAVKVLQDMGLPT 460



 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +G  HD RF + VE+ G+   QG   +K+ A+  AA   L++ 
Sbjct: 531 ISETGGSHDKRFIMEVEVDGVKF-QGNGSNKKVAKAYAALSALEKL 575


>gi|514260|gb|AAA19961.1| dsRNA-binding protein 4F.2 [Xenopus laevis]
          Length = 800

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
              +         +     +YK+  ++GP H P FT+ VE+      +    SK+ A+  
Sbjct: 301 EPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDDKTF-EASGPSKKTAKLH 359

Query: 215 AAAEVLKREGIWT 227
            A +VL+  G+ T
Sbjct: 360 VAVKVLQDMGLPT 372



 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +G  HD RF + VE+ G+   QG   +K+ A+  AA   L++ 
Sbjct: 443 ISETGGSHDKRFIMEVEVDGVKF-QGNGSNKKVAKAYAALSALEKL 487


>gi|12746296|gb|AAK07425.1| 110 kDa NFAR protein [Homo sapiens]
          Length = 894

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|73986770|ref|XP_868155.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 12 [Canis familiaris]
          Length = 896

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|24234750|ref|NP_036350.2| interleukin enhancer-binding factor 3 isoform a [Homo sapiens]
 gi|62512150|sp|Q12906|ILF3_HUMAN RecName: Full=Interleukin enhancer-binding factor 3; AltName:
           Full=Double-stranded RNA-binding protein 76;
           Short=DRBP76; AltName: Full=M-phase phosphoprotein 4;
           Short=MPP4; AltName: Full=Nuclear factor associated with
           dsRNA; Short=NFAR; AltName: Full=Nuclear factor of
           activated T-cells 90 kDa; Short=NF-AT-90; AltName:
           Full=Translational control protein 80; Short=TCP80
 gi|119604540|gb|EAW84134.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_d [Homo
           sapiens]
 gi|119604542|gb|EAW84136.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_d [Homo
           sapiens]
          Length = 894

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|297703571|ref|XP_002828711.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 1
           [Pongo abelii]
          Length = 861

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 293 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 352

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 353 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 411

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 412 ASGPSKKTAKLHVAVKVLQDMGLPT 436



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 511 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 539


>gi|290463409|sp|Q91550|ILF3A_XENLA RecName: Full=Interleukin enhancer-binding factor 3-A; AltName:
           Full=CCAAT box transcription factor subunit; AltName:
           Full=Double-stranded RNA-binding protein 4F.1;
           Short=DsRNA-binding protein 4F.1
          Length = 897

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
              +         +     +YK+  ++GP H P FT+ VE+      +    SK+ A+  
Sbjct: 399 EPPQVMNALMRLNQLKPGLQYKLISQTGPVHAPVFTMSVEVDDKTF-EASGPSKKTAKLH 457

Query: 215 AAAEVLKREGIWT 227
            A +VL+  G+ T
Sbjct: 458 VAVKVLQDMGLPT 470



 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +G  HD RF + VE+ G+   QG   +K+ A+  AA   L++ 
Sbjct: 541 ISETGGSHDKRFVMEVEVDGVKF-QGSGSNKKVAKAYAALSALEKL 585


>gi|49257953|gb|AAH74107.1| Unknown (protein for IMAGE:6866473) [Xenopus laevis]
          Length = 477

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
              +         +     +YK+  ++GP H P FT+ VE+      +    SK+ A+  
Sbjct: 399 EPPQVMNALMRLNQLKPGLQYKLISQTGPVHAPVFTMSVEVDDKTF-EASGPSKKTAKLH 457

Query: 215 AAAEVLKREGIWT 227
            A +VL+  G+ T
Sbjct: 458 VAVKVLQDMGLPT 470


>gi|514259|gb|AAA19960.1| dsRNA-binding protein 4F.1 [Xenopus laevis]
          Length = 695

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
              +         +     +YK+  ++GP H P FT+ VE+      +    SK+ A+  
Sbjct: 399 EPPQVMNALMRLNQLKPGLQYKLISQTGPVHAPVFTMSVEVDDKTF-EASGPSKKTAKLH 457

Query: 215 AAAEVLKREGIWT 227
            A +VL+  G+ T
Sbjct: 458 VAVKVLQDMGLPT 470



 Score = 58.4 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y++   +G  HD RF + VE+ G+   QG   +K+ A+  AA   L++ 
Sbjct: 538 YEMISETGGSHDKRFVMEVEVDGVKF-QGSGSNKKVAKAYAALSALEKL 585


>gi|10834850|gb|AAG22859.1| CCAAT box transcription factor p122 subunit [Xenopus laevis]
          Length = 896

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
              +         +     +YK+  ++GP H P FT+ VE+      +    SK+ A+  
Sbjct: 399 EPPQVMNALMRLNQLKPGLQYKLISQTGPVHAPVFTMSVEVDDKTF-EASGPSKKTAKLH 457

Query: 215 AAAEVLKREGIWT 227
            A +VL+  G+ T
Sbjct: 458 VAVKVLQDMGLPT 470



 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +G  HD RF + VE+ G+   QG   +K+ A+  AA   L++ 
Sbjct: 541 ISETGGSHDKRFVMEVEVDGVKF-QGSGSNKKVAKAYAALSALEKL 585


>gi|147906306|ref|NP_001083930.1| interleukin enhancer-binding factor 3-A [Xenopus laevis]
 gi|83405079|gb|AAI10712.1| CBTF122 protein [Xenopus laevis]
          Length = 902

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
              +         +     +YK+  ++GP H P FT+ VE+      +    SK+ A+  
Sbjct: 399 EPPQVMNALMRLNQLKPGLQYKLISQTGPVHAPVFTMSVEVDDKTF-EASGPSKKTAKLH 457

Query: 215 AAAEVLKREGIWT 227
            A +VL+  G+ T
Sbjct: 458 VAVKVLQDMGLPT 470



 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +G  HD RF + VE+ G+   QG   +K+ A+  AA   L++ 
Sbjct: 541 ISETGGSHDKRFVMEVEVDGVKF-QGSGSNKKVAKAYAALSALEKL 585


>gi|229891738|sp|Q5BJ52|TRBP2_XENTR RecName: Full=RISC-loading complex subunit tarbp2
          Length = 351

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 150 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFLEIGSGTSKKLAKRNA 208

Query: 216 AAEVLKRE 223
           AA++L + 
Sbjct: 209 AAKMLLQI 216


>gi|229891737|sp|Q6GPZ1|TRBP2_XENLA RecName: Full=RISC-loading complex subunit tarbp2
          Length = 351

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 150 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFLEIGSGTSKKLAKRNA 208

Query: 216 AAEVLKRE 223
           AA++L + 
Sbjct: 209 AAKMLLQI 216


>gi|118405094|ref|NP_001072537.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Xenopus
           (Silurana) tropicalis]
 gi|112418622|gb|AAI22034.1| double-stranded RNA activated protein kinase 1 [Xenopus (Silurana)
           tropicalis]
 gi|168984501|emb|CAO98764.1| double-stranded RNA activated protein kinase 1 [Xenopus (Silurana)
           tropicalis]
          Length = 552

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%)

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             +     +GP HDPRFT  V ++     +G D  K+ AE +AA   L    
Sbjct: 21  YHFNEVEATGPSHDPRFTSQVFVNQEKLGEGQDKKKKGAENIAAKMALLTLK 72



 Score = 50.7 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 17/61 (27%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +             G  H P F   V I      +    +K+ A++ AA   L   
Sbjct: 124 HELCQKHKLICKFFDECYGLPHIPEFWCKVVIGEEEFHKVKGNNKKEAKRKAAYFALMSL 183

Query: 224 G 224
            
Sbjct: 184 K 184


>gi|71895927|ref|NP_001025646.1| RISC-loading complex subunit tarbp2 [Xenopus (Silurana) tropicalis]
 gi|60550973|gb|AAH91619.1| TAR (HIV-1) RNA binding protein 2 [Xenopus (Silurana) tropicalis]
          Length = 331

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 130 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFLEIGSGTSKKLAKRNA 188

Query: 216 AAEVLKRE 223
           AA++L + 
Sbjct: 189 AAKMLLQI 196


>gi|148232429|ref|NP_001085574.1| RISC-loading complex subunit tarbp2 [Xenopus laevis]
 gi|49115615|gb|AAH72963.1| MGC82499 protein [Xenopus laevis]
          Length = 331

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 130 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFLEIGSGTSKKLAKRNA 188

Query: 216 AAEVLKRE 223
           AA++L + 
Sbjct: 189 AAKMLLQI 196


>gi|299756242|ref|XP_001829190.2| hypothetical protein CC1G_01870 [Coprinopsis cinerea okayama7#130]
 gi|298411587|gb|EAU92825.2| hypothetical protein CC1G_01870 [Coprinopsis cinerea okayama7#130]
          Length = 252

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 67/230 (29%), Gaps = 30/230 (13%)

Query: 19  NRSLLEKALTHSSISHSYQESYE-----RLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           +  ++ +A  H++   +     +     RL+ +G ++L + ++   F+   +    E+  
Sbjct: 12  DLEIILEAF-HATAQSTDLNQRQWGDKARLQEIGVQVLHMALTAHYFSVKPNLSATEIQS 70

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           + + +       +     D      +  D   +      +    +  S           +
Sbjct: 71  KVSEVRHGGRIHEWVGRYDNLIRFVMDKDSPAERGQLFEAYVGALWYSKGMKATQKWISD 130

Query: 134 VAGTFVDKYWKQRAL------------------------KSGKFRRDAKTELQEWAHAKF 169
           + G  V    +                                    A         A  
Sbjct: 131 LLGDNVYVKDEPDDTAQDVTGDSSQSPPQYSPTATTTSGPPHPSVAPAIPLAHVNELAAQ 190

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                      SGP H P +TV   ++G +  +G + +K+ A+  AA+  
Sbjct: 191 RKINMTWEASFSGPPHMPIWTVRCLVNGQSYGEGTNANKKKAQAEAASNA 240


>gi|55741782|ref|NP_001007150.1| double-stranded RNA-binding protein Staufen homolog 2 isoform LL
           (A) [Rattus norvegicus]
 gi|19526444|gb|AAL89718.1|AF483620_1 RNA-binding protein staufen splice form A [Rattus norvegicus]
          Length = 571

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G     +F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQARKEKEPDYVLLSERGMPRRRKFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273



 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         + P+YK+   SGP H   F+V + +      +    S +
Sbjct: 1   MANPKEKTPMCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59

Query: 210 AAEQVAAAEVL 220
            A+Q  A + L
Sbjct: 60  KAQQAVANKAL 70


>gi|19526446|gb|AAL89719.1|AF483621_1 RNA-binding protein staufen splice form B [Rattus norvegicus]
          Length = 512

 Score = 59.9 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G     +F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQARKEKEPDYVLLSERGMPRRRKFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 113 YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 172

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 173 MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 231

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 232 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 273



 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         + P+YK+   SGP H   F+V + +      +    S +
Sbjct: 1   MANPKEKTPMCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59

Query: 210 AAEQVAAAEVL 220
            A+Q  A + L
Sbjct: 60  KAQQAVANKAL 70


>gi|194744759|ref|XP_001954860.1| GF18480 [Drosophila ananassae]
 gi|190627897|gb|EDV43421.1| GF18480 [Drosophila ananassae]
          Length = 871

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 1/81 (1%)

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD- 205
                   +     L E         P Y +   +GP H   F   VEI+G         
Sbjct: 788 CPPLITHDKHPVCVLNELTSKNKWTPPHYTLRENTGPPHSRTFLFSVEINGQTYTPDRGC 847

Query: 206 CSKRAAEQVAAAEVLKREGIW 226
            +K+ A+  AA   L   GI 
Sbjct: 848 NNKKEAKLNAAKLCLCALGIL 868


>gi|26346424|dbj|BAC36863.1| unnamed protein product [Mus musculus]
          Length = 528

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 339 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 398

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G    +
Sbjct: 399 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 457

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 458 ASGPSKKTAKLHVAVKVLQDMGLPT 482


>gi|3834675|gb|AAC71052.1| interleukin enhancer binding factor 3 [Mus musculus]
          Length = 911

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 339 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 398

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G    +
Sbjct: 399 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 457

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 458 ASGPSKKTAKLHVAVKVLQDMGLPT 482



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 557 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 585


>gi|148693240|gb|EDL25187.1| interleukin enhancer binding factor 3, isoform CRA_d [Mus musculus]
          Length = 919

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 350 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 409

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G    +
Sbjct: 410 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 468

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 469 ASGPSKKTAKLHVAVKVLQDMGLPT 493



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 568 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 596


>gi|111607430|ref|NP_034691.2| interleukin enhancer-binding factor 3 isoform 1 [Mus musculus]
 gi|27764511|gb|AAO23054.1| interleukin enhancer binding factor 3 [Mus musculus]
 gi|148693241|gb|EDL25188.1| interleukin enhancer binding factor 3, isoform CRA_e [Mus musculus]
          Length = 911

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 339 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 398

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G    +
Sbjct: 399 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 457

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 458 ASGPSKKTAKLHVAVKVLQDMGLPT 482



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 557 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 585


>gi|15529502|gb|AAL01308.1|AF403117_1 adenosine deaminase [Gallus gallus]
 gi|15529510|gb|AAL01312.1| adenosine deaminase [Gallus gallus]
          Length = 680

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 74  QYKLLSQTGPVHAPVFVMAVEVNGQVF-EGSGPTKKKAKLHAAEKALR 120



 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+    SG  H   F + V + G    +G   +K+ A+  AA   L   
Sbjct: 229 YEFLSESGESHAKNFVMAVAVDGQTF-EGSGRNKKLAKARAAQSALASL 276


>gi|15529496|gb|AAL01305.1|AF403114_1 adenosine deaminase [Gallus gallus]
 gi|15529504|gb|AAL01309.1| adenosine deaminase [Gallus gallus]
          Length = 524

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 95  QYKLLSQTGPVHAPVFVMAVEVNGQVF-EGSGPTKKKAKLHAAEKALR 141



 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+    SG  H   F + V + G    +G   +K+ A+  AA   L   
Sbjct: 250 YEFLSESGESHAKNFVMAVAVDGQTF-EGSGRNKKLAKARAAQSALASL 297


>gi|15529500|gb|AAL01307.1|AF403116_1 adenosine deaminase [Gallus gallus]
 gi|15529508|gb|AAL01311.1|AF403120_1 adenosine deaminase [Gallus gallus]
          Length = 503

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 74  QYKLLSQTGPVHAPVFVMAVEVNGQVF-EGSGPTKKKAKLHAAEKALR 120



 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+    SG  H   F + V + G    +G   +K+ A+  AA   L   
Sbjct: 229 YEFLSESGESHAKNFVMAVAVDGQTF-EGSGRNKKLAKARAAQSALASL 276


>gi|45383650|ref|NP_989571.1| RNA-specific adenosine deaminase B1 [Gallus gallus]
 gi|161702982|ref|NP_001104544.1| RNA-specific adenosine deaminase B1 [Gallus gallus]
 gi|15529498|gb|AAL01306.1|AF403115_1 adenosine deaminase [Gallus gallus]
 gi|15529506|gb|AAL01310.1| adenosine deaminase [Gallus gallus]
 gi|53127005|emb|CAG31002.1| hypothetical protein RCJMB04_1i12 [Gallus gallus]
          Length = 701

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 95  QYKLLSQTGPVHAPVFVMAVEVNGQVF-EGSGPTKKKAKLHAAEKALR 141



 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+    SG  H   F + V + G    +G   +K+ A+  AA   L   
Sbjct: 250 YEFLSESGESHAKNFVMAVAVDGQTF-EGSGRNKKLAKARAAQSALASL 297


>gi|114675413|ref|XP_001166155.1| PREDICTED: interleukin enhancer binding factor 3 isoform 2 [Pan
           troglodytes]
          Length = 725

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576


>gi|330417941|ref|NP_001193424.1| interleukin enhancer-binding factor 3 [Bos taurus]
          Length = 899

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576


>gi|321457253|gb|EFX68343.1| hypothetical protein DAPPUDRAFT_114652 [Daphnia pulex]
          Length = 201

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    L EW        PEY+V  +SGP H   + +  ++S     +G+  SK+AA+  A
Sbjct: 130 NPSGVLLEWRQTTHRPLPEYRVVRKSGPSHSKTYFMTCKLS-ERVTEGVGKSKKAAKNDA 188

Query: 216 AAEVLKRE 223
           A ++L+  
Sbjct: 189 AEKMLQIL 196


>gi|19113464|ref|NP_596672.1| mitochondrial ribosomal protein subunit L3 [Schizosaccharomyces
           pombe 972h-]
 gi|74644177|sp|O43042|RM03_SCHPO RecName: Full=60S ribosomal protein L3, mitochondrial; Flags:
           Precursor
 gi|2950480|emb|CAA17794.1| mitochondrial ribosomal protein subunit L3 [Schizosaccharomyces
           pombe]
          Length = 326

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 80/236 (33%), Gaps = 20/236 (8%)

Query: 5   RYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  TL+KRIG   +    +L +AL   ++  + Q S E+L  +G       +   +   +
Sbjct: 46  KVYTLKKRIGLPESYPMKVLVQALIDKTVVQNPQYSNEKLWSIGKVFGDFYVLEYIKCKY 105

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKDV 107
               E  +    N  + ++  SQ+A    L    R                    LRK  
Sbjct: 106 PRLPEEAVHGMQNGWMGSKALSQLATIWGLEVQRREEGLQESFGKVLAKRADPEMLRKPG 165

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD--AKTELQEWA 165
             +        + +++  +YL  G      F++ +   + L      +    + +L    
Sbjct: 166 EIYKDEAARRAILAILGGVYLHQGFNDTKKFINDHILSKQLDPRTMLQLQWPRRQLSRLC 225

Query: 166 HAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  P Y++   +G    +P F +          QG   S   AEQ AA   L
Sbjct: 226 KRLSLKEPVYRIIAETGRKSREPVFVIGAYSGHHLLGQGQASSLNLAEQQAAYNSL 281


>gi|297276121|ref|XP_002801113.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 3
           [Macaca mulatta]
          Length = 764

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|297276117|ref|XP_002801112.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 2
           [Macaca mulatta]
          Length = 706

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576


>gi|296485875|gb|DAA27990.1| interleukin enhancer binding factor 3, 90kDa [Bos taurus]
          Length = 954

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 385 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 444

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 445 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSSF-E 503

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 504 ASGPSKKTAKLHVAVKVLQDMGLPT 528



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 603 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 631


>gi|158255846|dbj|BAF83894.1| unnamed protein product [Homo sapiens]
          Length = 702

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|114675409|ref|XP_001166345.1| PREDICTED: interleukin enhancer-binding factor 3 isoform 5 [Pan
           troglodytes]
          Length = 706

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576


>gi|114675415|ref|XP_001166283.1| PREDICTED: interleukin enhancer binding factor 3 isoform 4 [Pan
           troglodytes]
          Length = 698

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576


>gi|114675407|ref|XP_001166580.1| PREDICTED: interleukin enhancer binding factor 3 isoform 10 [Pan
           troglodytes]
          Length = 777

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576


>gi|114675417|ref|XP_001166386.1| PREDICTED: interleukin enhancer binding factor 3 isoform 6 [Pan
           troglodytes]
          Length = 764

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|212549555|ref|NP_001131145.1| interleukin enhancer-binding factor 3 isoform e [Homo sapiens]
 gi|40674401|gb|AAH64836.1| ILF3 protein [Homo sapiens]
 gi|158256666|dbj|BAF84306.1| unnamed protein product [Homo sapiens]
          Length = 706

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576


>gi|4929371|gb|AAD33966.1|AF147209_1 double-stranded RNA-binding nuclear protein DRBP76 [Homo sapiens]
          Length = 702

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|73986752|ref|XP_868121.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           b isoform 3 [Canis familiaris]
          Length = 702

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|24234753|ref|NP_004507.2| interleukin enhancer-binding factor 3 isoform b [Homo sapiens]
 gi|9714268|emb|CAC01405.1| double-stranded RNA binding nuclear protein DRBP76 [Homo sapiens]
 gi|119604537|gb|EAW84131.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_a [Homo
           sapiens]
          Length = 702

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|332112803|gb|AEE02018.1| NF90a [Homo sapiens]
          Length = 702

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|321468345|gb|EFX79330.1| hypothetical protein DAPPUDRAFT_244967 [Daphnia pulex]
          Length = 96

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    L EW   +    PEY+V  +SGP H   + +  ++S     +G   SK+AA+  A
Sbjct: 25  NPSGVLSEWRFTRHSSLPEYRVVRKSGPSHSKTYFMTCKLSDRV-TEGEGKSKKAAKNDA 83

Query: 216 AAEVLKRE 223
           A ++L+  
Sbjct: 84  AQKMLQIL 91


>gi|311248674|ref|XP_003123290.1| PREDICTED: interleukin enhancer-binding factor 3-like [Sus scrofa]
          Length = 856

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGDEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 546 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 574


>gi|219968357|emb|CAO98758.1| double-stranded RNA activated protein kinase 1 [Tetraodon
           nigroviridis]
          Length = 667

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           Y+     GPDH   F +V  I+  A  +G+  +K+ A+Q AA         WT
Sbjct: 21  YEDVGCDGPDHFRTFKIVTIINDRAFPEGVGKNKKDAKQKAAENA------WT 67



 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +  + +  R GP H P+F   + I G     G   + + A Q AA   
Sbjct: 242 SHSFVMVDRQGPSHGPQFYYQLSIDGHKYPVGEGKTAKEARQNAAQLA 289


>gi|159163148|pdb|1UHZ|A Chain A, Solution Structure Of Dsrna Binding Domain In Staufen
           Homolog 2
          Length = 89

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ AA
Sbjct: 8   PISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKNAA 66

Query: 217 AEVLKREG 224
             +L + G
Sbjct: 67  EAMLLQLG 74


>gi|12746295|gb|AAK07424.1| 90 kDa NFAR protein [Homo sapiens]
          Length = 702

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|164508744|emb|CAM07147.1| double stranded RNA activated protein kinase 1 [Tetraodon
           nigroviridis]
          Length = 667

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           Y+     GPDH   F +V  I+  A  +G+  +K+ A+Q AA         WT
Sbjct: 21  YEDVGCDGPDHFRTFKIVTIINDRAFPEGVGKNKKDAKQKAAENA------WT 67



 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +  + +  R GP H P+F   + I G     G   + + A Q AA   
Sbjct: 242 SHSFVMVDRQGPSHGPQFYYQLSIDGHKYPVGEGKTAKEARQNAAQLA 289


>gi|119604539|gb|EAW84133.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_c [Homo
           sapiens]
          Length = 858

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576


>gi|114675405|ref|XP_001166048.1| PREDICTED: interleukin enhancer binding factor 3 isoform 1 [Pan
           troglodytes]
          Length = 860

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576


>gi|5762313|gb|AAD51098.1| nuclear factor associated with dsRNA NFAR-1 [Homo sapiens]
          Length = 702

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|332112805|gb|AEE02019.1| NF90b [Homo sapiens]
          Length = 706

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576


>gi|9081982|gb|AAF82686.1| dsRNA binding protein NFAR-1/DRB76 [Homo sapiens]
          Length = 515

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 139 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 198

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 199 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 257

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 258 ASGPSKKTAKLHVAVKVLQDMGLPT 282



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 357 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 385


>gi|148693237|gb|EDL25184.1| interleukin enhancer binding factor 3, isoform CRA_a [Mus musculus]
          Length = 553

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 350 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 409

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G    +
Sbjct: 410 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 468

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 469 ASGPSKKTAKLHVAVKVLQDMGLPT 493


>gi|119604543|gb|EAW84137.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_f [Homo
           sapiens]
          Length = 589

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 61  AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 120

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 121 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 179

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 180 ASGPSKKTAKLHVAVKVLQDMGLPT 204



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 279 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 307


>gi|299756084|ref|XP_001829079.2| hypothetical protein CC1G_01759 [Coprinopsis cinerea okayama7#130]
 gi|298411515|gb|EAU92714.2| hypothetical protein CC1G_01759 [Coprinopsis cinerea okayama7#130]
          Length = 352

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
             SGP H   + V   ++G+   +G   SK+ A++ AA +     G WT
Sbjct: 305 QFSGPSHAGTWLVRCIVNGIPKGEGTGSSKQNAKEEAARQAYYAMG-WT 352



 Score = 43.8 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 17  FANRSLLEKALTHSS------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
            +N  L+ +  THSS       S   Q   ERL +LG  +L  +++ LLF+     + GE
Sbjct: 46  ISNTDLVLQIFTHSSLRTRLTCSSLDQYDNERLSWLGKHVLDSVVTELLFDTRPMLRAGE 105

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           +  R   L+  +   +      L   +R    LR+           D+  +  A +YLD 
Sbjct: 106 IVERKEELLCDDLFEEWVTHYGLLRKLRYDPVLRESSGITKPQETRDIFYAYTAGVYLDS 165

Query: 131 GIEVAGTFVD 140
           G  V   ++ 
Sbjct: 166 GAPVVREWIQ 175


>gi|297685923|ref|XP_002820521.1| PREDICTED: double-stranded RNA-specific editase B2-like, partial
           [Pongo abelii]
          Length = 345

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y+   ++GP H P F V VE++GL   +G   +K+ A+  AA   L+
Sbjct: 78  QYRTVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 124


>gi|296206058|ref|XP_002750047.1| PREDICTED: double-stranded RNA-specific editase B2-like [Callithrix
           jacchus]
          Length = 998

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y+   ++GP H P F V VE++GL   +G   +K+ A+  AA   L+
Sbjct: 397 QYRTVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 443


>gi|187950663|gb|AAI37478.1| Adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
           sapiens]
 gi|187954983|gb|AAI40853.1| Adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
           sapiens]
          Length = 739

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y+   ++GP H P F V VE++GL   +G   +K+ A+  AA   L+
Sbjct: 141 QYRTVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 187



 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              F + V + G    +G   SK+ A   AA   L+  
Sbjct: 303 ARSFVMAVSVDGRTF-EGSGRSKKLARGQAAQAALQEL 339


>gi|148693238|gb|EDL25185.1| interleukin enhancer binding factor 3, isoform CRA_b [Mus musculus]
          Length = 909

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 337 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 396

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G    +
Sbjct: 397 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 455

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 456 ASGPSKKTAKLHVAVKVLQDMGLPT 480



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 555 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 583


>gi|148693239|gb|EDL25186.1| interleukin enhancer binding factor 3, isoform CRA_c [Mus musculus]
          Length = 727

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 350 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 409

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G    +
Sbjct: 410 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 468

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 469 ASGPSKKTAKLHVAVKVLQDMGLPT 493



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 568 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 596


>gi|109088041|ref|XP_001118272.1| PREDICTED: double-stranded RNA-specific editase B2, partial [Macaca
           mulatta]
          Length = 504

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y+   ++GP H P F V VE++GL   +G   +K+ A+  AA   L+
Sbjct: 141 QYRTVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 187


>gi|111607434|ref|NP_001036173.1| interleukin enhancer-binding factor 3 isoform 3 [Mus musculus]
 gi|28704095|gb|AAH47272.1| Interleukin enhancer binding factor 3 [Mus musculus]
 gi|71044411|gb|AAZ20651.1| nuclear factor 90 [Mus musculus]
          Length = 716

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 339 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 398

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G    +
Sbjct: 399 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 457

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 458 ASGPSKKTAKLHVAVKVLQDMGLPT 482



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 557 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 585


>gi|111607432|ref|NP_001036172.1| interleukin enhancer-binding factor 3 isoform 2 [Mus musculus]
 gi|62512154|sp|Q9Z1X4|ILF3_MOUSE RecName: Full=Interleukin enhancer-binding factor 3
 gi|21070213|gb|AAM34210.1|AF506968_1 interleukin enhancer binding factor 3 [Mus musculus]
 gi|26339136|dbj|BAC33239.1| unnamed protein product [Mus musculus]
 gi|27764513|gb|AAO23055.1| interleukin enhancer binding factor 3 [Mus musculus]
          Length = 898

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G    +
Sbjct: 386 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|8922077|ref|NP_061172.1| double-stranded RNA-specific editase B2 [Homo sapiens]
 gi|33112436|sp|Q9NS39|RED2_HUMAN RecName: Full=Double-stranded RNA-specific editase B2; AltName:
           Full=RNA-dependent adenosine deaminase 3; AltName:
           Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
           enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
 gi|8650031|gb|AAF78094.1| double-stranded RNA specific adenosine deaminase [Homo sapiens]
 gi|55665370|emb|CAH72171.1| adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
           sapiens]
 gi|55665458|emb|CAH73405.1| adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
           sapiens]
 gi|119606914|gb|EAW86508.1| adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
           sapiens]
          Length = 739

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y+   ++GP H P F V VE++GL   +G   +K+ A+  AA   L+
Sbjct: 141 QYRTVSQTGPVHAPVFAVAVEVNGLTF-EGTGPTKKKAKMRAAELALR 187



 Score = 45.7 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              F + V + G    +G   SK+ A   AA   L+  
Sbjct: 303 ARSFVMAVSVDGRTF-EGSGRSKKLARGQAAQAALQEL 339


>gi|291238580|ref|XP_002739212.1| PREDICTED: Probable RISC-loading complex subunit
           BRAFLDRAFT_242885-like [Saccoglossus kowalevskii]
          Length = 315

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           TP Y +    G  H P+F   V + G   A G   SK+ A+  AA  VL++  +
Sbjct: 25  TPIYDLIACEGAAHQPKFVYRVTV-GEHTANGDGTSKKQAKHNAAENVLEQFNV 77



 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +   +LQE   A+    P+Y      GP H   F +   +      QG   SK+ A++ A
Sbjct: 109 NPVGQLQELVVARHWRRPDYIQISECGPPHSREFIIACRVHSFQE-QGKGRSKKIAKRAA 167

Query: 216 AAEVLKRE 223
           A  +L+R 
Sbjct: 168 AWAMLQRI 175


>gi|20178435|ref|NP_619856.1| CPXV069 protein [Cowpox virus]
 gi|20153053|gb|AAM13514.1|AF482758_65 CPXV069 protein [Cowpox virus]
 gi|14488159|emb|CAC42100.1| dsRNA binding protein [Cowpox virus]
          Length = 190

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 28/124 (22%), Gaps = 2/124 (1%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +       R           AD +   I                                
Sbjct: 57  YSSDDIPPRWFTTMEADKPDADAMADSIIDDASREKSMREDHKSFDDVIPAKKIIDWKDA 116

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+                 GP + P F   V+I G    +    SKR A+  A
Sbjct: 117 NPVTIINEYCQ--ITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 174

Query: 216 AAEV 219
           A   
Sbjct: 175 AKLA 178


>gi|111607436|ref|NP_001036174.1| interleukin enhancer-binding factor 3 isoform 4 [Mus musculus]
 gi|71044413|gb|AAZ20652.1| nuclear factor 90 [Mus musculus]
          Length = 703

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G    +
Sbjct: 386 KKKKIQKKEEKADPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|327270557|ref|XP_003220056.1| PREDICTED: double-stranded RNA-specific editase 1-like [Anolis
           carolinensis]
          Length = 698

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G A  +G   +K+ A+  AA + L+
Sbjct: 93  QYKLISQTGPVHAPVFVMAVEVNGQAF-EGSGPTKKKAKLHAAEKALR 139



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L   
Sbjct: 247 YDFLSESGESHAKNFVMAVSVDGHTF-EGSGRNKKLAKARAAQSALASL 294


>gi|221040030|dbj|BAH11778.1| unnamed protein product [Homo sapiens]
          Length = 473

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V + G   A G   +K+ A++ 
Sbjct: 268 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVTV-GNEVATGTGPNKKIAKKN 326

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 327 AAEAMLLQLG 336



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 75  YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 134

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 135 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 194 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 235


>gi|126322875|ref|XP_001366516.1| PREDICTED: similar to interleukin enhancer binding factor 3, 90kDa,
           [Monodelphis domestica]
          Length = 1084

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      +IQ     +           E         
Sbjct: 512 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTIQIPPSTTYAITPMKRPMEEDGEEKSPSK 571

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 572 KKKKIQKKEEKTEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGSSF-E 630

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 631 ASGPSKKTAKLHVAVKVLQDMGLPT 655



 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +G  HD RF + VE+ G    QG   +K+ A+  AA   L++ 
Sbjct: 730 ISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAFAALTALEKL 774


>gi|15221749|ref|NP_173854.1| NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III
           [Arabidopsis thaliana]
 gi|9743333|gb|AAF97957.1|AC000103_7 F21J9.11 [Arabidopsis thaliana]
 gi|15010594|gb|AAK73956.1| At1g24450/F21J9_210 [Arabidopsis thaliana]
 gi|20334854|gb|AAM16183.1| At1g24450/F21J9_210 [Arabidopsis thaliana]
 gi|332192410|gb|AEE30531.1| nuclear fusion defective 2 protein /ribonuclease III [Arabidopsis
           thaliana]
          Length = 191

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 4/121 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + L+ +IGY F N +LL +A+TH+S S     + + L   G  I+   +S        
Sbjct: 47  DLAKLQTQIGYKFNNINLLRRAMTHASFSQE---NNKALSIFGTHIIETAVSLQFLAKDI 103

Query: 65  SAKEGELSVRFNSLVS-AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                 L    + + +   +C+     L L   IRVS+       + + +    +  ++ 
Sbjct: 104 DISSKALGRLISEVSNVESSCALDGDRLGLGKIIRVSTKTDASNSAILCTGFRAIFGAIA 163

Query: 124 A 124
            
Sbjct: 164 I 164


>gi|224055960|ref|XP_002192699.1| PREDICTED: RNA-specific adenosine deaminase B1 [Taeniopygia
           guttata]
          Length = 768

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 162 QYKLLSQTGPVHAPMFVMAVEVNGQVF-EGSGPTKKKAKLHAAEKALR 208



 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+    SG  H   F + V + G    +G   +K+ A+  AA   L   
Sbjct: 317 YEFLSESGESHAKNFIMAVAVDGQTF-EGSGRNKKLAKARAAQSALASL 364


>gi|1770458|emb|CAA66918.1| M-phase phosphoprotein 4 [Homo sapiens]
          Length = 611

 Score = 59.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|332853012|ref|XP_001166193.2| PREDICTED: interleukin enhancer-binding factor 3 isoform 3 [Pan
           troglodytes]
          Length = 690

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|297276119|ref|XP_001102411.2| PREDICTED: interleukin enhancer-binding factor 3-like isoform 1
           [Macaca mulatta]
          Length = 690

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|24234756|ref|NP_703194.1| interleukin enhancer-binding factor 3 isoform c [Homo sapiens]
 gi|9714270|emb|CAC01406.1| double-stranded RNA binding nuclear protein DRBP76 delta [Homo
           sapiens]
          Length = 690

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|254233016|ref|ZP_04926343.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis C]
 gi|124602075|gb|EAY61085.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis C]
          Length = 198

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 4/169 (2%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRV 99
           +EFLGD +LGL I+  LF+      EG+L+    S+V+ +  + VAR L    L   + +
Sbjct: 1   MEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLL 60

Query: 100 SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AK 158
                    +  +SI AD +ESL+ A+YL  G+E A   + + +      +         
Sbjct: 61  GRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDW 120

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
               +   A  G+     +   +GPDHD  FT VV +       G+  S
Sbjct: 121 KTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRS 169


>gi|297703573|ref|XP_002828712.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 2
           [Pongo abelii]
          Length = 669

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 293 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 352

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 353 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 411

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 412 ASGPSKKTAKLHVAVKVLQDMGLPT 436



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 511 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 539


>gi|9714266|emb|CAC01404.1| DRBP76 alpha [Homo sapiens]
          Length = 564

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 192 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 251

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 252 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 310

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 311 ASGPSKKTAKLHVAVKVLQDMGLPT 335



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 414 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 442


>gi|307109321|gb|EFN57559.1| hypothetical protein CHLNCDRAFT_143199 [Chlorella variabilis]
          Length = 2232

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
                +E  +G+ FA++ L+ +ALTH S   S    ++RLEFLGD +L  L+  +     +
Sbjct: 1924 DVGAIEAVLGHTFASKWLVVEALTHCSWPGSGVRCFQRLEFLGDAVLDALMHDMRSVAVN 1983

Query: 65   SAKEGELSVRFNSLVSAE 82
            +++           V   
Sbjct: 1984 ASRLAYAGKPGLDFVEEW 2001


>gi|51870138|ref|YP_073691.1| hypothetical protein LDVICp186 [Lymphocystis disease virus -
           isolate China]
 gi|51858346|gb|AAU11030.1| hypothetical protein [Lymphocystis disease virus - isolate China]
          Length = 251

 Score = 59.6 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 69/209 (33%), Gaps = 8/209 (3%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVR 74
           ++ L  +A T  S+      +YE LE LGD +    +    +  F   +  +    ++  
Sbjct: 28  DKEL-TQAFTPPSV--DPSINYESLEILGDGVAAYFLPMYFYKSFPQLQNPKGVKAIARL 84

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             +  S  + S +A+ L    +I+   +L+ +    +  +    + S+   L     +E 
Sbjct: 85  KINYASRRSFSSIAKFLGFWPYIKKPKNLKINQKKLLEDVFEAFLGSVCLILDNHFNVEG 144

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
            GT V   + +          + K         K                H         
Sbjct: 145 IGTAVCYNFLKSVFDGMTIEINYKALFDPKTRLKELTDKHKTELGLPDYTHSGN-KTECY 203

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           + G   A     +++  EQ  + ++L+  
Sbjct: 204 VGGELLAVVYGSNQKDREQEGSEKILEIL 232


>gi|155573864|gb|ABU24344.1| dsRNA-activated protein kinase R [Salmo salar]
          Length = 713

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            +           +++     GPDH   FT+ V I G A   G+  +K+ A++ AA   L
Sbjct: 11  FEYAQRQGQISDIKFEEVGTDGPDHLKTFTLRVVIKGHAYPNGVGKTKKEAKRNAAKHAL 70



 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 53/194 (27%), Gaps = 6/194 (3%)

Query: 31  SISHSYQESYE-RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
           S  + + +  +  L+ L    +G   ++    +    KE           + E  +    
Sbjct: 109 SWLNEHSQKNKLSLKALEGARVGPNNTSQCCRYVVGEKEYPEGFGNTKKEAKEEAAMQVY 168

Query: 90  ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149
                      +       +     +    + ++ +  ++                    
Sbjct: 169 LELCGGSQTTGTVDENCNGTTGKHKEELNGKVVVLSEKVEH-----MNMSPAQNVPEQYS 223

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                      +      K     ++K+  +SGP H+P+F   V I       G+  + +
Sbjct: 224 FITTEETNFIGILNHYCQKTKRFLDFKLVEKSGPSHNPQFVYKVLIDKREYPDGLGKTAK 283

Query: 210 AAEQVAAAEVLKRE 223
            A+Q AA       
Sbjct: 284 EAKQQAAQLAWSAL 297



 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 2/101 (1%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +LI  +      + + +         A          K       H++        +  
Sbjct: 68  HALIGMMETTEQKDASVSCPPSPAPSPAPPVRAVISQPKYVSWLNEHSQKNKLSLKALEG 127

Query: 180 -RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            R GP++  +      +      +G   +K+ A++ AA +V
Sbjct: 128 ARVGPNNTSQ-CCRYVVGEKEYPEGFGNTKKEAKEEAAMQV 167


>gi|158254910|dbj|BAF83426.1| unnamed protein product [Homo sapiens]
          Length = 366

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K   +PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 159 NPVGALQELVVQKGWRSPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 217

Query: 216 AAEVL 220
           AA++L
Sbjct: 218 AAKML 222


>gi|169612533|ref|XP_001799684.1| hypothetical protein SNOG_09389 [Phaeosphaeria nodorum SN15]
 gi|111062461|gb|EAT83581.1| hypothetical protein SNOG_09389 [Phaeosphaeria nodorum SN15]
          Length = 474

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 70/221 (31%), Gaps = 22/221 (9%)

Query: 23  LEKA-LTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           L++A  TH SI  +             YERLE+LGD  + L+ S  L+N F      +L 
Sbjct: 162 LQEAVFTHRSIHANNVNVHQHVDFGLDYERLEYLGDAYIELIASRALYNRFPHVDVPQLC 221

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     ++ +        ++   +           + AD+ E+ +A + L    
Sbjct: 222 SWRERLVENVALAKFSEAYGFPDQLKRKVEFD-KNSKAWRKVVADIFEAYVAGVVLSDPE 280

Query: 133 EVAGTFVDKYWKQR------ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
               T      +          +       A+ +LQ+            +          
Sbjct: 281 NGFATAEKWLDELWASQLLNFQEKVVENARARDDLQKLLVVNGIQLNYKEEKPMIMEQGV 340

Query: 187 PRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            ++ + V +            G    K  A   AA + +KR
Sbjct: 341 QKYYLGVYLTGWGYEDEWLGSGDGQKKAQACISAATDAIKR 381


>gi|332256664|ref|XP_003277436.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 5
           [Nomascus leucogenys]
          Length = 674

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|332256660|ref|XP_003277434.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 3
           [Nomascus leucogenys]
          Length = 741

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|332256658|ref|XP_003277433.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 2
           [Nomascus leucogenys]
          Length = 729

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 122 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 168



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 277 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 321


>gi|332256656|ref|XP_003277432.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 1
           [Nomascus leucogenys]
 gi|332256662|ref|XP_003277435.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 4
           [Nomascus leucogenys]
          Length = 701

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|311270262|ref|XP_003132836.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
           editase 1-like [Sus scrofa]
          Length = 816

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 256 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 302


>gi|297708140|ref|XP_002830837.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2
           [Pongo abelii]
          Length = 674

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|297708138|ref|XP_002830836.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1
           [Pongo abelii]
          Length = 740

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 133 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 179



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 288 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 332


>gi|297287384|ref|XP_001118216.2| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1
           [Macaca mulatta]
          Length = 674

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|297287382|ref|XP_002803150.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2
           [Macaca mulatta]
          Length = 740

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 133 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 179



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 288 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 332


>gi|296232315|ref|XP_002761540.1| PREDICTED: double-stranded RNA-specific editase 1 [Callithrix
           jacchus]
          Length = 740

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 133 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 179



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 288 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 332


>gi|239985464|ref|NP_001155267.1| RNA-specific adenosine deaminase B1 isoform 4 [Pan troglodytes]
          Length = 674

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|239985462|ref|NP_001155266.1| RNA-specific adenosine deaminase B1 isoform 2 [Pan troglodytes]
          Length = 741

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|239985460|ref|NP_001155265.1| RNA-specific adenosine deaminase B1 isoform 3 [Pan troglodytes]
          Length = 714

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|239985458|ref|NP_001122104.2| RNA-specific adenosine deaminase B1 isoform 1 [Pan troglodytes]
          Length = 701

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|126326680|ref|XP_001377363.1| PREDICTED: similar to protein activator of the interferon-induced
           protein kinase [Monodelphis domestica]
          Length = 520

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 2/126 (1%)

Query: 97  IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
            RV+           +   A   ++  AA+            V         K  K + +
Sbjct: 275 FRVTIGDIICTGEGSSKKMAKH-KAAEAAIGHLKANASLCFAVPDPTAPDPSKQPKNQAN 333

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
               LQE A       PEY ++   GP H   FT +  +       G   SK+ A++ AA
Sbjct: 334 PIGSLQELAIQHGWRLPEYTLSQEGGPAHKKEFTTICRLE-SFIETGKGASKKQAKRNAA 392

Query: 217 AEVLKR 222
            + L +
Sbjct: 393 EKFLAK 398



 Score = 50.7 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
             ++      K    P Y+     G  + P FT  V I  +    G   SK+ A+  AA 
Sbjct: 242 PIQVLHEYGMKTNNVPVYEFERADGHANTPSFTFRVTIGDI-ICTGEGSSKKMAKHKAAE 300

Query: 218 EVLKREG 224
             +    
Sbjct: 301 AAIGHLK 307


>gi|119629763|gb|EAX09358.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
           CRA_b [Homo sapiens]
          Length = 700

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285


>gi|41351285|gb|AAH65545.1| Adenosine deaminase, RNA-specific, B1 (RED1 homolog rat) [Homo
           sapiens]
          Length = 701

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285


>gi|21954729|gb|AAM83100.1|AF525422_1 adenosine deaminase ADAR2 [Homo sapiens]
 gi|23266659|gb|AAN10291.1| adenosine deaminase [Homo sapiens]
          Length = 729

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 122 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 168



 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 277 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 313


>gi|22506829|gb|AAM97654.1| adenosine deaminase ADAR2 variant [Homo sapiens]
          Length = 701

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285


>gi|2114493|gb|AAB58300.1| RNA editase [Homo sapiens]
          Length = 741

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285


>gi|119629762|gb|EAX09357.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
           CRA_a [Homo sapiens]
          Length = 729

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 122 QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 168



 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 277 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 313


>gi|7669479|ref|NP_056649.1| double-stranded RNA-specific editase 1 isoform 3 [Homo sapiens]
 gi|2039302|gb|AAC51242.1| dsRNA adenosine deaminase DRADA2c [Homo sapiens]
 gi|119629766|gb|EAX09361.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
           CRA_e [Homo sapiens]
          Length = 714

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285


>gi|237681091|ref|NP_001153702.1| double-stranded RNA-specific editase 1 isoform 7 [Homo sapiens]
 gi|71274097|dbj|BAE16329.1| adenosine deaminase acting on RNA type2d [Homo sapiens]
          Length = 674

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285


>gi|4379098|emb|CAB09392.1| RNA editing deaminase 1 [Homo sapiens]
          Length = 699

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285


>gi|7669477|ref|NP_056648.1| double-stranded RNA-specific editase 1 isoform 2 [Homo sapiens]
 gi|2829669|sp|P78563|RED1_HUMAN RecName: Full=Double-stranded RNA-specific editase 1; AltName:
           Full=RNA-editing deaminase 1; AltName: Full=RNA-editing
           enzyme 1; AltName: Full=dsRNA adenosine deaminase
 gi|1707502|emb|CAA67611.1| double-stranded RNA-specific editase [Homo sapiens]
 gi|1766056|gb|AAB61687.1| double stranded RNA-specific editase 1 hRED1-L [Homo sapiens]
 gi|2039300|gb|AAC51241.1| dsRNA adenosine deaminase DRADA2b [Homo sapiens]
 gi|7717441|emb|CAB90493.1| human dsRNA adenosine deaminase DRADA2b, EC 3.5 [Homo sapiens]
 gi|119629765|gb|EAX09360.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
           CRA_d [Homo sapiens]
          Length = 741

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285


>gi|4501919|ref|NP_001103.1| double-stranded RNA-specific editase 1 isoform 1 [Homo sapiens]
 gi|1707504|emb|CAA67762.1| double-stranded RNA-specific editase [Homo sapiens]
 gi|1766054|gb|AAB61686.1| double stranded RNA-specific editase 1 hRED1-S [Homo sapiens]
 gi|2039298|gb|AAC51240.1| dsRNA adenosine deaminase DRADA2a [Homo sapiens]
 gi|71274091|dbj|BAE16326.1| adenosine deaminase acting on RNA type2a [Homo sapiens]
 gi|71274093|dbj|BAE16327.1| adenosine deaminase acting on RNA type2a [Homo sapiens]
 gi|71274095|dbj|BAE16328.1| adenosine deaminase acting on RNA type2a [Homo sapiens]
 gi|119629764|gb|EAX09359.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
           CRA_c [Homo sapiens]
          Length = 701

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285


>gi|313224452|emb|CBY20242.1| unnamed protein product [Oikopleura dioica]
          Length = 2082

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 1/109 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
               L+  + Y F    L   AL     +   ++++ERLEFLGD +L  L+   L+N   +
Sbjct: 1879 IDELQNELEYTFKTPHLCRLALAKKKYTKDPKDNFERLEFLGDAVLDYLVVDELYNRRSA 1938

Query: 66   A-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            A   G+L+    S+ S      +A  + L     + +   KD  S M  
Sbjct: 1939 ALDSGQLTDLKQSITSNNLFGSLAFCMGLPQSTLMKASAAKDHISCMYK 1987



 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             SLL +ALT  + +     + ERLEF GD  + +  + +L+  +    +GEL+    + +
Sbjct: 1671 PSLLLRALTQPTAND--FFNLERLEFFGDSFIKIACTRMLYEKYAHFSDGELTSARGAYI 1728

Query: 80   SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTS 113
            S     ++ +  L   S +++   +     S  TS
Sbjct: 1729 SNANFLKLLKLRLSDGSCLQIPRYMNCYDNSRKTS 1763


>gi|328865990|gb|EGG14376.1| putative RNase III [Dictyostelium fasciculatum]
          Length = 576

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 65/193 (33%), Gaps = 23/193 (11%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----------------YERLEFLGD 48
           +    +  I  +F N  LL +  TH S       +                 +RLEFLGD
Sbjct: 131 KVDQFQSNI-ISFENDLLLREIFTHPSSKKINSLNPAEYKLFKDLLPFTTDNQRLEFLGD 189

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
            IL    S  LF  +  A EGEL+ R + L +     +   E  +   +R SS       
Sbjct: 190 SILKFCASIYLFFKYPKANEGELTTRRSELTNNTYLLEKCNEWGIIELLRYSSTEDIK-- 247

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
                 +ADV+E++  A++L+ G +    F+          S           +    + 
Sbjct: 248 ----KPKADVMEAMFGAIFLERGFKEVYRFIVHTVYNDHQYSTLPTFKCNHSFERQLSSI 303

Query: 169 FGVTPEYKVTFRS 181
                       S
Sbjct: 304 QSKFLFDVQVKIS 316



 Score = 43.0 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 7/95 (7%)

Query: 5   RYSTLEKRI----GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           + S+++ +         +   LLE A+T          SY+RLEFLGD  L  ++S  L+
Sbjct: 299 QLSSIQSKFLFDVQVKISKVCLLEDAIT---CLGDQNYSYQRLEFLGDSYLDGIVSHFLY 355

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95
             F    EG LS     LV  E  +Q+++ + L  
Sbjct: 356 REFPLENEGFLSQARALLVRNEALAQISQRIKLYQ 390


>gi|224157911|ref|XP_002199819.1| PREDICTED: similar to interleukin enhancer binding factor 3, 90kDa,
           partial [Taeniopygia guttata]
          Length = 755

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 323 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAVTPMKRPMEEDGEEKSPSK 382

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VEI G    +
Sbjct: 383 KKKKIQKKEEKLEPPQAMNALMKLNQLKPGLQYKLVSQTGPVHAPIFTMSVEIDGSTF-E 441

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 442 ASGPSKKTAKLHVAVKVLQDMGLPT 466



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 546 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 574


>gi|296229005|ref|XP_002760091.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
           3 [Callithrix jacchus]
          Length = 1181

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 517 QTCEFNLIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565



 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              K G + E+++  + GP H+P+F   V++           SK+ A+Q+AA E +K  
Sbjct: 622 CMHKLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 728 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 773


>gi|296229003|ref|XP_002760090.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
           2 [Callithrix jacchus]
          Length = 1200

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 517 QTCEFNLIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565



 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              K G + E+++  + GP H+P+F   V++           SK+ A+Q+AA E +K  
Sbjct: 622 CMHKLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792


>gi|296229001|ref|XP_002760089.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
           1 [Callithrix jacchus]
          Length = 1226

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 517 QTCEFNLIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKA 565



 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              K G + E+++  + GP H+P+F   V++           SK+ A+Q+AA E +K  
Sbjct: 622 CMHKLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 747 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792


>gi|296211842|ref|XP_002752582.1| PREDICTED: RISC-loading complex subunit TARBP2-like isoform 2
           [Callithrix jacchus]
 gi|296211844|ref|XP_002752583.1| PREDICTED: RISC-loading complex subunit TARBP2-like isoform 3
           [Callithrix jacchus]
          Length = 345

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
                  Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +  
Sbjct: 120 RSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE- 178

Query: 198 LAPAQGMDCSKRAAEQVAAAEVL 220
                G   SK+ A++ AAA++L
Sbjct: 179 RFIEIGSGTSKKLAKRNAAAKML 201


>gi|296211840|ref|XP_002752581.1| PREDICTED: RISC-loading complex subunit TARBP2-like isoform 1
           [Callithrix jacchus]
          Length = 366

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
                  Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +  
Sbjct: 141 RSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE- 199

Query: 198 LAPAQGMDCSKRAAEQVAAAEVL 220
                G   SK+ A++ AAA++L
Sbjct: 200 RFIEIGSGTSKKLAKRNAAAKML 222


>gi|302694007|ref|XP_003036682.1| hypothetical protein SCHCODRAFT_102832 [Schizophyllum commune H4-8]
 gi|300110379|gb|EFJ01780.1| hypothetical protein SCHCODRAFT_102832 [Schizophyllum commune H4-8]
          Length = 1489

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 78/244 (31%), Gaps = 27/244 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
               ++  IG       LL  ALTH++ + S   +YER+EFLGD +L   +   ++  +  
Sbjct: 1213 IDGVQSVIGQKLNKPELLALALTHAN-NSSPLGNYERIEFLGDALLDFQVVEYVYRKYTQ 1271

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV------------------ 107
                 L++  +++V     + +  E  L   +   S   +                    
Sbjct: 1272 QPPSVLTLLKSAMVGNSPLAAICAESGLYRHLHQKSHQIQQSINTYLTALQKAKQKEYAA 1331

Query: 108  --------CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT 159
                      +     +D+VES++ A+Y+   +E  G         +       R +   
Sbjct: 1332 ADDDLRERGQYWFDALSDIVESIVGAIYISDDLEWTGVQQLFKHFLQPFYEKHIRMNTLA 1391

Query: 160  ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                    +   +               +    V + G   A     +   A + A++  
Sbjct: 1392 VHPTKILLELVQSQCCHKLELVKSASAGQTQCNVLLHGAVIASKTAVNGVLAARGASSIA 1451

Query: 220  LKRE 223
            L + 
Sbjct: 1452 LNKL 1455



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 7/118 (5%)

Query: 9    LEKRIG-YAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL-LFNHF 63
            L K +    F +     LL  ALT  S    +  +YERLE  GD  L  L S        
Sbjct: 979  LVKELNAIHFNHIIAEDLLHAALTTPSA--GFDRNYERLELYGDAFLKYLASLHLFVMSH 1036

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
             +  EG+L      L+S +   + +  L L SF+     + +        +      +
Sbjct: 1037 HNDSEGKLHAARRPLISNQKLMECSLALGLPSFVIGKPFVIRFWGPANFRMNPPGGSA 1094


>gi|301767390|ref|XP_002919107.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2
           [Ailuropoda melanoleuca]
          Length = 741

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 98  LSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|301767388|ref|XP_002919106.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 701

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 98  LSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|281341190|gb|EFB16774.1| hypothetical protein PANDA_007702 [Ailuropoda melanoleuca]
          Length = 718

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 88  LSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 130



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 239 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 283


>gi|74001569|ref|XP_544931.2| PREDICTED: similar to RNA-specific adenosine deaminase  B1 isoform
           DRADA2a [Canis familiaris]
          Length = 746

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 143 LSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 185



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 294 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 338


>gi|311255463|ref|XP_003126242.1| PREDICTED: RISC-loading complex subunit TARBP2-like [Sus scrofa]
          Length = 366

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 217

Query: 216 AAEVL 220
           AA++L
Sbjct: 218 AAKML 222


>gi|149714845|ref|XP_001504584.1| PREDICTED: similar to TAR RNA binding protein 2 isoform 1 [Equus
           caballus]
          Length = 366

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 217

Query: 216 AAEVL 220
           AA++L
Sbjct: 218 AAKML 222


>gi|149714848|ref|XP_001504588.1| PREDICTED: similar to TAR RNA binding protein 2 isoform 3 [Equus
           caballus]
 gi|149714851|ref|XP_001504586.1| PREDICTED: similar to TAR RNA binding protein 2 isoform 2 [Equus
           caballus]
          Length = 345

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 138 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 196

Query: 216 AAEVL 220
           AA++L
Sbjct: 197 AAKML 201


>gi|119617124|gb|EAW96718.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_b [Homo sapiens]
 gi|119617125|gb|EAW96719.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_b [Homo sapiens]
          Length = 222

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 15  NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 73

Query: 216 AAEVL 220
           AA++L
Sbjct: 74  AAKML 78


>gi|113912024|gb|AAI22654.1| TAR (HIV-1) RNA binding protein 2 [Bos taurus]
          Length = 319

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 217

Query: 216 AAEVL 220
           AA++L
Sbjct: 218 AAKML 222


>gi|19743838|ref|NP_004169.3| RISC-loading complex subunit TARBP2 isoform b [Homo sapiens]
 gi|85068512|ref|NP_599151.2| RISC-loading complex subunit TARBP2 isoform b [Homo sapiens]
 gi|332839227|ref|XP_003313704.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 2 [Pan
           troglodytes]
 gi|332839229|ref|XP_003313705.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 3 [Pan
           troglodytes]
 gi|119617123|gb|EAW96717.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_a [Homo sapiens]
          Length = 345

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 138 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 196

Query: 216 AAEVL 220
           AA++L
Sbjct: 197 AAKML 201


>gi|164448622|ref|NP_001069146.2| RISC-loading complex subunit TARBP2 [Bos taurus]
 gi|229891741|sp|Q0IIG6|TRBP2_BOVIN RecName: Full=RISC-loading complex subunit TARBP2
 gi|296487914|gb|DAA30027.1| RISC-loading complex subunit TARBP2 [Bos taurus]
          Length = 366

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 217

Query: 216 AAEVL 220
           AA++L
Sbjct: 218 AAKML 222


>gi|159163844|pdb|2CPN|A Chain A, Solution Structure Of The Second Dsrbd Of Tar Rna-Binding
           Protein 2
          Length = 89

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 17  NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 75

Query: 216 AAEVL 220
           AA++L
Sbjct: 76  AAKML 80


>gi|30585201|gb|AAP36873.1| Homo sapiens TAR (HIV) RNA binding protein 2 [synthetic construct]
 gi|60653021|gb|AAX29205.1| TAR [synthetic construct]
          Length = 367

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 217

Query: 216 AAEVL 220
           AA++L
Sbjct: 218 AAKML 222


>gi|339909|gb|AAA36765.1| TAR RNA binding protein [Homo sapiens]
          Length = 345

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 138 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 196

Query: 216 AAEVL 220
           AA++L
Sbjct: 197 AAKML 201


>gi|7412848|gb|AAB50581.2| TAR RNA binding protein 2 [Homo sapiens]
          Length = 366

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 217

Query: 216 AAEVL 220
           AA++L
Sbjct: 218 AAKML 222


>gi|19743840|ref|NP_599150.1| RISC-loading complex subunit TARBP2 isoform a [Homo sapiens]
 gi|332839225|ref|XP_003313703.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 1 [Pan
           troglodytes]
 gi|209572714|sp|Q15633|TRBP2_HUMAN RecName: Full=RISC-loading complex subunit TARBP2; AltName:
           Full=TAR RNA-binding protein 2; AltName:
           Full=Trans-activation-responsive RNA-binding protein
 gi|13543405|gb|AAH05860.1| TAR (HIV-1) RNA binding protein 2 [Homo sapiens]
 gi|30583119|gb|AAP35804.1| TAR (HIV) RNA binding protein 2 [Homo sapiens]
 gi|60656097|gb|AAX32612.1| TAR RNA binding protein 2 [synthetic construct]
 gi|119617126|gb|EAW96720.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_c [Homo sapiens]
 gi|123993747|gb|ABM84475.1| Tar (HIV-1) RNA binding protein 2 [synthetic construct]
 gi|123994511|gb|ABM84857.1| Tar (HIV-1) RNA binding protein 2 [synthetic construct]
 gi|208967915|dbj|BAG73796.1| TAR (HIV-1) RNA binding protein 2 [synthetic construct]
          Length = 366

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 217

Query: 216 AAEVL 220
           AA++L
Sbjct: 218 AAKML 222


>gi|107904|pir||A38430 trans-activation-responsive RNA-binding protein - human  (fragment)
          Length = 363

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 156 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 214

Query: 216 AAEVL 220
           AA++L
Sbjct: 215 AAKML 219


>gi|323126808|gb|ADX24105.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
          ATCC 12394]
          Length = 79

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 8/73 (10%)

Query: 7  STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
            LE+ +       F + +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  
Sbjct: 2  KKLEELLAASFDICFEDHTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEY 61

Query: 59 LFNHFDSAKEGEL 71
          LF  +   ++   
Sbjct: 62 LFAKYPKKQKVTC 74


>gi|170085495|ref|XP_001873971.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651523|gb|EDR15763.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 367

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
             SGP H  R+TV   ++G+    G   SK+ A++ AA +     G WT
Sbjct: 320 EFSGPSHAGRWTVKCVVNGIPKGVGTGGSKQVAKEEAARQAYYAMG-WT 367



 Score = 41.5 bits (95), Expect = 0.085,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 10/131 (7%)

Query: 16  AFANRSLLEKALTHSSISHSYQ--------ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              +  L+ +  TH S+  + +        +  ERL  LG   L + ++ +LFN     K
Sbjct: 39  KIHSSDLVLRVFTHKSLRRATRSSTNLDDFDDNERLTELGKAALNVAVAHVLFNKRPMLK 98

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
             E+S +   ++S E  +      +L   +R   +L   +          +  + +  +Y
Sbjct: 99  PSEMSSQHKHILSDENINNWVTFYNLRMKLRCHPNLYPRLN--TPQETCSIFYAYVGGVY 156

Query: 128 LDGGIEVAGTF 138
            + G E    +
Sbjct: 157 AESGQEAVREW 167


>gi|194912620|ref|XP_001982542.1| GG12877 [Drosophila erecta]
 gi|190648218|gb|EDV45511.1| GG12877 [Drosophila erecta]
          Length = 632

 Score = 59.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 2/108 (1%)

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
                  S I     +  +     +    +     K  K R           +       
Sbjct: 11  QHPVSATSDINMNGYNRKMPQKRCYEMPKYADPKKKMCKERIPQPKNTVAMLNELRHGLI 70

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              +  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 71  YK-LESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|149639039|ref|XP_001507858.1| PREDICTED: similar to adenosine deaminase [Ornithorhynchus
           anatinus]
          Length = 699

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +YK+  ++GP H P F + VE++G A  +G   +K+ A+  AA + L+
Sbjct: 93  QYKLLSQTGPVHAPMFVMAVEVNGQAF-EGTGPTKKKAKLHAAEKALR 139



 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+    SG  H   F + V + G    +G   +K+ A+  AA   L   
Sbjct: 248 YEFLSESGESHAKNFVMAVAVDGQNF-EGSGRNKKLAKARAAQSALASL 295


>gi|260785891|ref|XP_002587993.1| hypothetical protein BRAFLDRAFT_125391 [Branchiostoma floridae]
 gi|229273149|gb|EEN44004.1| hypothetical protein BRAFLDRAFT_125391 [Branchiostoma floridae]
          Length = 376

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
             +  L      K  ++  ++V   SGP H   F    ++     A+G    K+ +++ A
Sbjct: 281 KPEITLVYEIARKRNMSVSFEVVKESGPPHMKTFVTSCKVGD-FVAEGEGNGKKVSKKRA 339

Query: 216 AAEVLKREGIW 226
           A +VL++  + 
Sbjct: 340 AQKVLEQLKVL 350



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                +      L         + P+YK+   +GP H   FT+ + ++          S 
Sbjct: 67  NMANPKEKTPMCLINELARYNKIQPQYKLITETGPAHQKTFTISLTLNDKTW-SAEGSSL 125

Query: 209 RAAEQVAAAEVL 220
           + A+  AA++ L
Sbjct: 126 KKAQHAAASKAL 137



 Score = 43.8 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             F V + I       G   +++ A   AAA+ LK   
Sbjct: 217 KTFYVSLTIGNREF-IGEGRTRQQARHNAAAKALKVLK 253


>gi|291414148|ref|XP_002723321.1| PREDICTED: interleukin enhancer binding factor 3 [Oryctolagus
           cuniculus]
          Length = 896

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 323 AFGQLHKVLGMDPLPSKLPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 382

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 383 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 441

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 442 ASGPSKKTAKLHVAVKVLQDMGLPT 466



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 545 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 573


>gi|296237713|ref|XP_002763865.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           2-like [Callithrix jacchus]
          Length = 399

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFMMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 52/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    + +    T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFLGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPEKSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|242021000|ref|XP_002430935.1| tar RNA binding protein, putative [Pediculus humanus corporis]
 gi|212516153|gb|EEB18197.1| tar RNA binding protein, putative [Pediculus humanus corporis]
          Length = 335

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           H+P F   V ++ L    G   SKR A+  AA  +LK+  +
Sbjct: 33  HNPLFIYRVHVNDL-FEDGKGKSKREAKHNAAENMLKKLNV 72



 Score = 44.9 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                   +    L+E+        P Y+V   SG  H   F +V  +S      G+  +
Sbjct: 87  YDEMDPGENYVGMLKEYCLMNPYPEPTYQVEEESGQPHCKVFKMVCFVS-QLQEYGISST 145

Query: 208 KRAAEQVAAAEVLKREG 224
           K+ A+Q+ A ++L+R  
Sbjct: 146 KKGAKQIGAFKMLERLK 162


>gi|194213163|ref|XP_001491016.2| PREDICTED: interleukin enhancer binding factor 3, 90kDa [Equus
           caballus]
          Length = 702

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNETPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|71896437|ref|NP_001026112.1| double-stranded RNA-binding protein Staufen homolog 2 [Gallus
           gallus]
 gi|53130432|emb|CAG31545.1| hypothetical protein RCJMB04_7n10 [Gallus gallus]
          Length = 472

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V+I G     G   +K+ A++ 
Sbjct: 378 MNPISRLAQIQQAKKEKEPEYVLLSERGMPRRREFVMQVKI-GNEITTGTGPNKKIAKRN 436

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 437 AAEAMLLQLG 446



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 1/74 (1%)

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  +      L         + P+YK+    GP H   FTV + +      +    
Sbjct: 70  QDNMANPKEKTPMCLVNELARFNRIQPQYKLLNERGPAHAKMFTVQLTLGEQTW-EAEGS 128

Query: 207 SKRAAEQVAAAEVL 220
           S + A+  AA++ L
Sbjct: 129 SIKKAQHAAASKAL 142



 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              SGP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 300 IKESGPPHMKSFVTRVTV-GEFTAEGEGNSKKLSKERAAMSVLQELK 345



 Score = 43.4 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 216 KIFYVQLTVGNSEFF-GEGKTRQAARHNAAMKALQAL 251


>gi|170586588|ref|XP_001898061.1| Double-stranded RNA binding motif family protein [Brugia malayi]
 gi|158594456|gb|EDP33040.1| Double-stranded RNA binding motif family protein [Brugia malayi]
          Length = 790

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 29/93 (31%)

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
             G            +     +     +               +  EYK+   SGP H  
Sbjct: 25  WWGQQFTEEEISPTKYVYNYSQIDANHQRTPMCRIAELARYNKIRHEYKLMDESGPAHKK 84

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +FTV + ++      G   S + A+Q AA   L
Sbjct: 85  QFTVSLVLTPDQVFYGKGASIKKAQQSAAETAL 117



 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 32/80 (40%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +       + +  + L +   A+    P++++    G      F + V        +G+
Sbjct: 434 MKMNPEYGHQINPVSRLMQIMQARKQNEPKFQLVAERGQSRYKEFVMEVICDDGLRCEGI 493

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  VL R G
Sbjct: 494 GPNKKLAKRAAAEAVLARIG 513



 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEV 219
                   +  E+ V    GP HD  + +  ++     +  A G   SK+ A+Q A + +
Sbjct: 335 HECALHMRMNVEFLVLKEEGPAHDRHYLLRCKLISAERVISADGEGSSKKIAKQNACSLM 394

Query: 220 LKRE 223
           L + 
Sbjct: 395 LTKL 398


>gi|54020805|ref|NP_001005648.1| interleukin enhancer-binding factor 3 [Xenopus (Silurana)
           tropicalis]
 gi|82183774|sp|Q6GL57|ILF3_XENTR RecName: Full=Interleukin enhancer-binding factor 3
 gi|49257941|gb|AAH74653.1| interleukin enhancer binding factor 3, 90kDa [Xenopus (Silurana)
           tropicalis]
          Length = 698

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
              +         +     +YK+  ++GP H P FT+ VE+      +    SK+ A+  
Sbjct: 399 EPPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDEKTF-EASGPSKKTAKLH 457

Query: 215 AAAEVLKREGIWT 227
            A +VL+  G+ T
Sbjct: 458 VAVKVLQDMGLPT 470



 Score = 35.7 bits (80), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G+   QG   +
Sbjct: 540 ISETGGSHDKRFVMEVEVDGVKF-QGSGSN 568


>gi|238586858|ref|XP_002391299.1| hypothetical protein MPER_09293 [Moniliophthora perniciosa FA553]
 gi|215455774|gb|EEB92229.1| hypothetical protein MPER_09293 [Moniliophthora perniciosa FA553]
          Length = 267

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 19/216 (8%)

Query: 18  ANRSLLEKALTHSSISHSYQES---------YERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +  ++++A TH +    YQ+            +L  +G+ ++GL  +  +   +     
Sbjct: 2   NSTDIIQQACTHQTFLQLYQKHKPDDPAPATNAQLAAIGNSLMGLFATEFVRASYPYLPT 61

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSS--DLRKDVCSFMTSIQADVVESLIAAL 126
             L    ++ V   TC+ VA+E+     +R            +  +     +  +L A +
Sbjct: 62  RVLKAAVSAHVGPLTCANVAQEMGAVPLLRWHRSRGTLTKPGTLHSDALTSIPRALTAFV 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y                 Q  ++      D K  L E         PE + T R    + 
Sbjct: 122 YRKRS------LPSGRAIQVDIRGMLKFLDPKKALLEMVEKYGRERPEIQETGRY--SNS 173

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P F V +        +G   S + AE  AA + L R
Sbjct: 174 PVFVVGIYSGEEQLGEGFGSSLKMAEYRAAEDALHR 209


>gi|114675403|ref|XP_001166543.1| PREDICTED: interleukin enhancer binding factor 3 isoform 9 [Pan
           troglodytes]
          Length = 896

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 1/119 (0%)

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
               +          AA       E          K++  K  +     +         +
Sbjct: 345 KKPKNENPVDYTGKPAAAMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQ 404

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
                +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 405 LKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPT 462



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 546 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 574


>gi|73986760|ref|XP_868135.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 7 [Canis familiaris]
          Length = 888

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
              +         +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+  
Sbjct: 398 EPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAKLH 456

Query: 215 AAAEVLKREGIWT 227
            A +VL+  G+ T
Sbjct: 457 VAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576


>gi|73986762|ref|XP_868138.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 8 [Canis familiaris]
          Length = 900

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
              +         +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+  
Sbjct: 398 EPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAKLH 456

Query: 215 AAAEVLKREGIWT 227
            A +VL+  G+ T
Sbjct: 457 VAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 548 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 576


>gi|73986758|ref|XP_868130.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 6 [Canis familiaris]
          Length = 873

 Score = 59.2 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
              +         +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+  
Sbjct: 371 EPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAKLH 429

Query: 215 AAAEVLKREGIWT 227
            A +VL+  G+ T
Sbjct: 430 VAVKVLQDMGLPT 442



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 521 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 549


>gi|315051166|ref|XP_003174957.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893]
 gi|311340272|gb|EFQ99474.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893]
          Length = 1425

 Score = 58.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             S +E  I Y+F  R+LL  +L+H S +     +Y+RLEFLGD IL  +++  LF     
Sbjct: 1142 LSKIEPLIDYSFTKRALLAASLSHPS-NLISGMTYQRLEFLGDSILDNVVTRALFRCDKE 1200

Query: 66   AKEGELSVRFNSLVSAETCSQVAR 89
                ++ +   +LV+A+  + +  
Sbjct: 1201 IPHQDMHLIRTALVNADFLAFLCM 1224



 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +T+   IG  F +  L+  A+T +S       +Y+RLEFLGD  L L  S  L       
Sbjct: 959  NTILSSIG--FKDIKLVLTAITATSARE--NTNYQRLEFLGDSALKLHASMQLLADHPIW 1014

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
             EG LS + +S+VS     + A +  L  FI  + 
Sbjct: 1015 HEGILSKKKDSIVSNSRLWKAAVDTGLDRFILTTC 1049


>gi|317156821|ref|XP_001826035.2| hypothetical protein AOR_1_660054 [Aspergillus oryzae RIB40]
          Length = 939

 Score = 58.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSA 66
            LE  +GY F+++SL  +++TH S    Y   SY RL FLG  I+ L++   L       
Sbjct: 700 DLEALLGYTFSDKSLAIESMTHPSCVGLYGTASYRRLSFLGAGIIELVVVRYLHRQKSFT 759

Query: 67  KEGELSVRFNSLVSAETCSQVARELDL 93
               L    +++ +    + +      
Sbjct: 760 SSKRLQSLKSAVTNNMFLAFLCLTFHW 786


>gi|238492895|ref|XP_002377684.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220696178|gb|EED52520.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 790

 Score = 58.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSA 66
            LE  +GY F+++SL  +++TH S    Y   SY RL FLG  I+ L++   L       
Sbjct: 551 DLEALLGYTFSDKSLAIESMTHPSCVGLYGTASYRRLSFLGAGIIELVVVRYLHRQKSFT 610

Query: 67  KEGELSVRFNSLVSAETCSQVARELDL 93
               L    +++ +    + +      
Sbjct: 611 SSKRLQSLKSAVTNNMFLAFLCLTFHW 637


>gi|83774779|dbj|BAE64902.1| unnamed protein product [Aspergillus oryzae]
          Length = 1256

 Score = 58.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSA 66
             LE  +GY F+++SL  +++TH S    Y   SY RL FLG  I+ L++   L       
Sbjct: 1017 DLEALLGYTFSDKSLAIESMTHPSCVGLYGTASYRRLSFLGAGIIELVVVRYLHRQKSFT 1076

Query: 67   KEGELSVRFNSLVSAETCSQVARELDL 93
                L    +++ +    + +      
Sbjct: 1077 SSKRLQSLKSAVTNNMFLAFLCLTFHW 1103


>gi|313212467|emb|CBY36441.1| unnamed protein product [Oikopleura dioica]
          Length = 2196

 Score = 58.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 1/109 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
               L+  + Y F    L   AL     +   ++++ERLEFLGD +L  L+   L+N   +
Sbjct: 1891 IDELQNELEYTFKTPHLCRLALAKKKYTKDPKDNFERLEFLGDAVLDYLVVDELYNRRSA 1950

Query: 66   A-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            A   G+L+    S+ S      +A  + L     + +   KD  S M  
Sbjct: 1951 ALDSGQLTDLKQSITSNNLFGSLAFCMGLPQSTLMKASAAKDHISCMYK 1999



 Score = 44.5 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 66/209 (31%), Gaps = 20/209 (9%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             SLL +ALT  + +     + ERLEF GD  + +  + +L+  +    +GEL+    + +
Sbjct: 1671 PSLLLRALTQPTAND--FFNLERLEFFGDSFIKIACTRMLYEKYAHFSDGELTSARGAYI 1728

Query: 80   SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
            S     ++ +  L   S +++   +     S  TS        + +              
Sbjct: 1729 SNANFLKLLKLRLSDGSCLQIPRYMNCYDNSRKTSGVIRAPGYVYSYNENFCPNAQPWYK 1788

Query: 139  VDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            +D      +         +      ++          + K   +   D      V   I 
Sbjct: 1789 LDDNGDETEIFPPMTDCSQFVSENFRDTHFNYMFFDSKDKRVDKKTAD-----VVESLIG 1843

Query: 197  GLAPAQGMDCSKRAAEQVAAA--EVLKRE 223
                  G        E++AA    +L   
Sbjct: 1844 AYLVTGG--------EKMAARFVIMLNNL 1864


>gi|297481628|ref|XP_002692232.1| PREDICTED: adenosine deaminase, RNA-specific, B2 (RED2 homolog rat)
           [Bos taurus]
 gi|296481330|gb|DAA23445.1| adenosine deaminase, RNA-specific, B2 [Bos taurus]
          Length = 785

 Score = 58.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           ++++  ++GP H P F V V+++GL   +G   +K+ A+  AA   L+
Sbjct: 141 QFRMVSQTGPVHAPIFAVAVDVNGLTF-EGTGPTKKKAKMRAAELALR 187


>gi|296232891|ref|XP_002807844.1| PREDICTED: LOW QUALITY PROTEIN: interleukin enhancer-binding factor
           3-like [Callithrix jacchus]
          Length = 895

 Score = 58.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q+ + L +           K+      ++Q     +           E         
Sbjct: 326 AFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 385

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K++  K  +     +         +     +YK+  ++GP H P FT+ VE+ G +  +
Sbjct: 386 KKKKIQKKEEKAEAPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSF-E 444

Query: 203 GMDCSKRAAEQVAAAEVLKREGIWT 227
               SK+ A+   A +VL+  G+ T
Sbjct: 445 ASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 572


>gi|300797105|ref|NP_001179517.1| double-stranded RNA-specific editase B2 [Bos taurus]
          Length = 734

 Score = 58.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           ++++  ++GP H P F V V+++GL   +G   +K+ A+  AA   L+
Sbjct: 141 QFRMVSQTGPVHAPIFAVAVDVNGLTF-EGTGPTKKKAKMRAAELALR 187


>gi|255633098|gb|ACU16904.1| unknown [Glycine max]
          Length = 188

 Score = 58.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             TL+K++GY F +  LL +A+TH+S S     + +    LG  ++   +S  L +    
Sbjct: 45  LETLQKQLGYTFKSIDLLRRAVTHASFSEE---NNKAFAILGASVIETSVSFHLLSRDVD 101

Query: 66  AKEGELSVRFNSLVSAETCS 85
               EL+ R + + + ++  
Sbjct: 102 LSSKELNRRLSQITNVDSSC 121


>gi|242022991|ref|XP_002431920.1| tar RNA binding protein, putative [Pediculus humanus corporis]
 gi|212517264|gb|EEB19182.1| tar RNA binding protein, putative [Pediculus humanus corporis]
          Length = 318

 Score = 58.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE         P Y++T   G  H+ +FT+   +       G   SK+ A++ A
Sbjct: 104 NPIGTLQEMCICHRWPPPVYEMTCEEGLPHERQFTMACIVF-KYREVGSGKSKKLAKRQA 162

Query: 216 AAEVLKRE 223
           A ++ ++ 
Sbjct: 163 AHKMWEKL 170



 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                   L +   ++ G TP+Y++    G  H+P F   V ++    A G   SK+ A+
Sbjct: 1   MPSKTPVSLLQEMLSRQGTTPKYELVQIEGAIHEPTFRYRVTVADNV-AIGTGRSKKVAK 59

Query: 213 QVAAAEVLKREG 224
             AA  +L +  
Sbjct: 60  HTAAKNLLDKLN 71


>gi|109096950|ref|XP_001106036.1| PREDICTED: RISC-loading complex subunit TARBP2 [Macaca mulatta]
          Length = 366

 Score = 58.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             +F  +           K    PEY VT  SGP H   FT+   +       G   SK+
Sbjct: 153 PQQFEGNPVGGSAGLVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKK 211

Query: 210 AAEQVAAAEVL 220
            A++ AAA++L
Sbjct: 212 LAKRNAAAKML 222


>gi|302790644|ref|XP_002977089.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
 gi|300155065|gb|EFJ21698.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
          Length = 299

 Score = 58.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              + +    + G +        +GP H+  F   VEI G+    G   SK+ AE  AA 
Sbjct: 88  CKNVLQEYAQRNGFSLPIYQIEITGPSHNSVFAATVEIGGVLYKGGTAKSKKEAEVKAAR 147

Query: 218 EVLKREG 224
             +    
Sbjct: 148 TAILAIK 154



 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLKRE 223
           T     + + G  H PRF   VE++G+         + +AAE  AA + L   
Sbjct: 16  TVPQYDSIKQGLPHLPRFQASVEVNGVKYESEDGFPNLKAAEHSAAKKALDSL 68


>gi|159163524|pdb|1X49|A Chain A, Solution Structure Of The First Dsrm Domain In Interferon-
           Induced, Double-Stranded Rna-Activated Protein Kinase
          Length = 97

 Score = 58.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 21/57 (36%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                  GV   YK    SGP HD RFT  V I      +    SK+ A   AA   
Sbjct: 21  NKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLA 77


>gi|224613372|gb|ACN60265.1| Double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar]
          Length = 416

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +   ++V   +GP H   F V V + G    +G   SK+ A+++AA  VL+  
Sbjct: 1   NMPVNFEVLKEAGPPHMKSFMVCVSV-GEFCGEGEGKSKKIAKKLAATAVLEEL 53



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V + G   A+GM  SK+ A++ 
Sbjct: 91  MNPISRLAQIQQAKKEKEPEYSMMTERGLPRRREFVMQVTVCGHC-AEGMGPSKKVAKRN 149

Query: 215 AAAEVLKREG 224
           AA ++L+  G
Sbjct: 150 AAEKMLELLG 159


>gi|223648210|gb|ACN10863.1| Double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar]
          Length = 706

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +   ++V   +GP H   F V V + G    +G   SK+ A+++AA  VL+  
Sbjct: 291 NMPVNFEVLKEAGPPHMKSFMVCVSV-GEFCGEGEGKSKKIAKKLAATAVLEEL 343



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V + G   A+GM  SK+ A++ 
Sbjct: 381 MNPISRLAQIQQAKKEKEPEYSMMTERGLPRRREFVMQVTVCGHC-AEGMGPSKKVAKRN 439

Query: 215 AAAEVLKREG 224
           AA ++L+  G
Sbjct: 440 AAEKMLELLG 449



 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 27/98 (27%), Gaps = 2/98 (2%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
            +   +E+    +    K        +                       +  +   P  
Sbjct: 158 CMTHTVELNAFCMKLGMKPMYKPIDPYPGMRPSNFNYNIRAPGPYQRSMQQYYYPFPPVG 217

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              + + + I G     G   +++ A+  AAA+ LK  
Sbjct: 218 PVLYHMELNIGGQQF-HGKGRTRQLAKHDAAAKALKTL 254



 Score = 38.4 bits (87), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 1/65 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                +      L         + PEYK+    GP H   F+V + +      +    S 
Sbjct: 68  NMANPKEKTPMCLVNELARFNKIQPEYKLLCEQGPAHSKIFSVRLSLGDQHW-EAEGTSI 126

Query: 209 RAAEQ 213
           + A+ 
Sbjct: 127 KKAQH 131


>gi|47229756|emb|CAG06952.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 665

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V ++G + A+GM  SK+ A++ 
Sbjct: 380 MNPISRLAQIQQAKKEKEPEYSMVTERGLPRRREFVMQVTVNGQS-AEGMGPSKKVAKRN 438

Query: 215 AAAEVLKREG 224
           AA ++L+  G
Sbjct: 439 AAEKMLELLG 448



 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 1/73 (1%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                 +      L         + P+YK+    GP H   F+V + +      +    S
Sbjct: 66  PNMANPKEKTPMCLVNELARFNKIQPQYKLLCEQGPAHSKIFSVQLTLGDQ-YWEAEGPS 124

Query: 208 KRAAEQVAAAEVL 220
            + A+  AAA  L
Sbjct: 125 IKKAQHSAAASAL 137



 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
           +K      G    +    ++     +  +   Y      GP     + + + + G     
Sbjct: 179 YKPVDPYPGMRHPNFHYNIRNPGLYQRSMQQYYYPFPPVGPI---LYHMELSVGGQQF-I 234

Query: 203 GMDCSKRAAEQVAAAEVLKRE 223
           G   +++ A+  AAA+ LK  
Sbjct: 235 GKGRTRQLAKNDAAAKALKVL 255


>gi|73968131|ref|XP_863799.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 6 [Canis familiaris]
          Length = 656

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 1/112 (0%)

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
              +                      + K     + K               +     +Y
Sbjct: 329 HHALRLSAFGQIYKVLEMDPLPSSKPFQKYSWSVTDKEGDHPDLMNALMRLNQIRPGLQY 388

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           K+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G  T
Sbjct: 389 KLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYPT 439



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 514 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 542


>gi|311252821|ref|XP_003125284.1| PREDICTED: interferon-induced, double-stranded RNA-activated
           protein kinase-like [Sus scrofa]
          Length = 242

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G D   +F    +I       G+  +K+ A+Q+AA +  ++ 
Sbjct: 124 GEDGPEKFHYKCKIGRKVYGSGVGSTKQEAKQLAAKQAYEKL 165



 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                K  V  +Y+   ++GP H+ RFT  V I      +    S
Sbjct: 15  NKYQQKNDVILKYRELCKTGPAHNLRFTYQVVIDEKEFPKAEGRS 59


>gi|291397874|ref|XP_002715382.1| PREDICTED: adenosine deaminase, RNA-specific [Oryctolagus
           cuniculus]
          Length = 1150

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E +K  
Sbjct: 569 CVHKLGSSCEFRLLSKEGPAHDPKFQYCVAVGSQTFPTASAPSKKVAKQMAAEEAMKAL 627



 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V ISG         SK+ A+Q AA + 
Sbjct: 464 QTCEFNLIEQSGPPHEPRFKFQVVISGREFPPAEAGSKKVAKQDAAMKA 512



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 694 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 739


>gi|326917772|ref|XP_003205170.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           2-like, partial [Meleagris gallopavo]
          Length = 479

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G     G   +K+ A++ 
Sbjct: 378 MNPISRLAQIQQAKKEKEPEYVLLSERGMPRRREFVMQVKV-GNEITTGTGPNKKIAKRN 436

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 437 AAEAMLLQLG 446



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 1/74 (1%)

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  +      L         + P+YK+    GP H   FTV + +      +    
Sbjct: 70  QDNMANPKEKTPMCLVNELARFNRIQPQYKLLNERGPAHAKMFTVQLTLGEQTW-EAEGS 128

Query: 207 SKRAAEQVAAAEVL 220
           S + A+  AA++ L
Sbjct: 129 SIKKAQHAAASKAL 142



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              SGP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 300 IKESGPPHMKSFVTRVTV-GEFTAEGEGNSKKLSKKRAAMSVLQELK 345


>gi|91091212|ref|XP_966668.1| PREDICTED: similar to tar RNA binding protein [Tribolium castaneum]
 gi|270013108|gb|EFA09556.1| hypothetical protein TcasGA2_TC011666 [Tribolium castaneum]
          Length = 384

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
               K   +    LQE   ++    P Y++    G  H+ +FT+  ++       G   S
Sbjct: 159 PFDDKVMGNPIGWLQEMCMSRRWPPPSYEMEHEEGLPHERQFTIACQVL-KFKEVGTGKS 217

Query: 208 KRAAEQVAAAEVLKRE 223
           K+ A+++AA ++ +  
Sbjct: 218 KKLAKRMAAHKMWQAL 233



 Score = 39.5 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           TP+Y++    G  H+P F   V I+    A G   S
Sbjct: 80  TPKYELVQIEGAIHEPIFRYRVFINNDLVATGTGRS 115


>gi|317419872|emb|CBN81908.1| Double-stranded RNA-binding protein Staufen homolog 2
           [Dicentrarchus labrax]
          Length = 618

 Score = 58.8 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V+++    A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPEYLLLSERGMPRRREFIMQVKVNNEV-ATGTGPNKKVAKRN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 50.7 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 55/163 (33%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    ++++S    + +    T   A    +
Sbjct: 113 YRPLDPKPMPNYRANYNFRGMFNQRYHYPVPKIFYVQLSVGSHEFIGEGRTRQAARHSAA 172

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L               ++   + G     ++  L      K  ++  ++V   S
Sbjct: 173 MKALQALRNEPIPERP-PQSPEEKGETEEGSDASKSEISLVYEIALKRNLSVNFEVLKES 231

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  +L+   
Sbjct: 232 GPPHMKSFLTRVTV-GEFSAEGEGNSKKLSKKRAALSILQDLK 273



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         + P+YK+    GP H   FTV + +      +    S +
Sbjct: 1   MANPKEKTPMCLVNELARFNRIQPQYKLLNERGPAHAKIFTVQLTLGEQVW-EAEGTSIK 59

Query: 210 AAEQVAAAEVL 220
            A+   AA+ L
Sbjct: 60  KAQHSTAAKAL 70


>gi|301108992|ref|XP_002903577.1| Dicer-like 1 (DCL1) [Phytophthora infestans T30-4]
 gi|262097301|gb|EEY55353.1| Dicer-like 1 (DCL1) [Phytophthora infestans T30-4]
          Length = 1664

 Score = 58.4 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 37/116 (31%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHS----------------------------- 35
            R   L++R+ Y F N+ LL +A+TH S+                                
Sbjct: 1402 RLMLLQQRLKYTFRNKRLLLEAVTHPSVGQLVLHIDQMDANGADGNADGNAGGDIEVMSR 1461

Query: 36   --------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
                    ++  YERLE+LGD ++  L  +  F  +D    G LS   ++ VS + 
Sbjct: 1462 SQKKKKTVWKGDYERLEYLGDALIEYLTLSYAFLMYDKWLPGSLSQWKSATVSNDA 1517



 Score = 40.3 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 25/174 (14%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF-NHF 63
            + S L  +IG    + +LL+ A T        + +YERLE LGD  L L  S  ++    
Sbjct: 1203 QISHLMGKIGLEL-DMTLLDDATT--------KPAYERLEILGDTFLKLETSWYMYEQRK 1253

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT----------- 112
            D  +EG+L+     ++  +  +Q A    L  ++   +++ +                  
Sbjct: 1254 DIYQEGQLTQLRRDIIRNDRLNQFALAARLHHYMLYPAEVEQHPFQCWKPSCMGKTPDPV 1313

Query: 113  ----SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                   ADV+E++  A  +  G + A  F+                       
Sbjct: 1314 VAPAKWIADVLEAITGAYLVGQGEKGARYFLKWIGVTVLEHPSTNFARPFYPDC 1367


>gi|269966648|ref|ZP_06180727.1| hypothetical protein VMC_21570 [Vibrio alginolyticus 40B]
 gi|269828715|gb|EEZ82970.1| hypothetical protein VMC_21570 [Vibrio alginolyticus 40B]
          Length = 445

 Score = 58.4 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 1/105 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + ++  L     +   G                  +  K  LQE+A ++    P+Y V  
Sbjct: 75  QVVMQLLGTSWVMNQIGWLYKLAQTLDIRLDASNEKPMKMVLQEYAQSRKLQAPQYDVVE 134

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            SGP H+  F+V   I     A G   SK+ A + AA ++ ++  
Sbjct: 135 ISGPQHNQVFSVQCSIVNEK-AVGSGNSKKKASEDAAIKLYQKLN 178



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 62/197 (31%), Gaps = 14/197 (7%)

Query: 40  YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
            + L  LG  +   +IS  L      + +  +      L+          E    +    
Sbjct: 246 NKTLAQLGVYLQQAIISRELIMKCIESDDWSIGKIHAGLLRELVSDDFYNEFTWLNTKIW 305

Query: 100 SSDLRKDVCS-FMTSIQADVVESLIAALYLDGGIEVAG------------TFVDKYWKQR 146
                + + S    S    V+ +L    YL    E                   +     
Sbjct: 306 IEPFSRRIPSGEQGSYINSVIRALYGLSYLSMFEENFCAPDIDKVMRSRPFKQIRESLNN 365

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                K  +D+KT+LQE A     + P Y++    G +H+  F V    +G     G   
Sbjct: 366 DKYINKSGKDSKTQLQEVAQDLKLLLPIYEIAQTEGEEHNLIFKVKCSFNGQFTF-GEGT 424

Query: 207 SKRAAEQVAAAEVLKRE 223
           S   A Q AA  +L++ 
Sbjct: 425 SFNVASQQAAMVMLQKI 441


>gi|297851136|ref|XP_002893449.1| hypothetical protein ARALYDRAFT_472903 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339291|gb|EFH69708.1| hypothetical protein ARALYDRAFT_472903 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 190

 Score = 58.4 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 4/137 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             +TL+ +IGY F N +LL +A+TH+S S     + + L   G  I+   +S        
Sbjct: 46  DLATLQTQIGYKFNNTNLLRRAMTHASFSQE---NNKALSIFGTNIIETSVSLQFLAKDI 102

Query: 65  SAKEGELSVRFNSLVS-AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                 L      + +   +C+     L L   IRVS        + + +    +  ++ 
Sbjct: 103 DISSKALRRLIAQVSNVESSCALDGDRLGLGKIIRVSPKTDASNSAILCAGFRAIFGAIA 162

Query: 124 AALYLDGGIEVAGTFVD 140
               +          V 
Sbjct: 163 IDTGMVDEAIKVFWKVH 179


>gi|260835858|ref|XP_002612924.1| hypothetical protein BRAFLDRAFT_227842 [Branchiostoma floridae]
 gi|229298306|gb|EEN68933.1| hypothetical protein BRAFLDRAFT_227842 [Branchiostoma floridae]
          Length = 280

 Score = 58.4 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           ++K   +SGP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 53  QFKFVSQSGPVHAPEFIMSVEVNGQTF-EGRGGTKKKAKLHAAEQALR 99


>gi|301775807|ref|XP_002923310.1| PREDICTED: RISC-loading complex subunit TARBP2-like [Ailuropoda
           melanoleuca]
          Length = 366

 Score = 58.4 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGSGTSKKLAKRNA 217

Query: 216 AAEVL 220
           AA++L
Sbjct: 218 AAKML 222


>gi|291389267|ref|XP_002711070.1| PREDICTED: TAR RNA binding protein 2 [Oryctolagus cuniculus]
          Length = 366

 Score = 58.4 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGSGTSKKLAKRNA 217

Query: 216 AAEVL 220
           AA++L
Sbjct: 218 AAKML 222


>gi|281341836|gb|EFB17420.1| hypothetical protein PANDA_012447 [Ailuropoda melanoleuca]
          Length = 350

 Score = 58.4 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 143 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGSGTSKKLAKRNA 201

Query: 216 AAEVL 220
           AA++L
Sbjct: 202 AAKML 206


>gi|225714608|gb|ACO13150.1| Interferon-inducible double stranded RNA-dependent protein kinase
           activator A homolog [Lepeophtheirus salmonis]
          Length = 334

 Score = 58.4 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 33/84 (39%)

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           +  +           +   ELQE    +    P Y+V+   G  H+  F +V  +     
Sbjct: 107 QNCRDYGDYDDGIPGNPVGELQELCMNRRMQPPTYEVSREEGQPHERSFVLVCIVGSKYR 166

Query: 201 AQGMDCSKRAAEQVAAAEVLKREG 224
             G   SK+ A++ AA ++L +  
Sbjct: 167 ESGNGKSKKLAKRQAAYKMLTKLK 190


>gi|321470822|gb|EFX81797.1| hypothetical protein DAPPUDRAFT_211106 [Daphnia pulex]
          Length = 605

 Score = 58.4 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               G  H P +T  V I      +G   SK+ A+  AA   L++
Sbjct: 140 VKEEGSPHLPIYTARVVIGDQPF-EGTGSSKKQAKNEAAQAALQK 183


>gi|114326369|ref|NP_001041600.1| interferon-induced, double-stranded RNA-activated protein kinase
           [Canis lupus familiaris]
 gi|62002572|gb|AAX58777.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Canis
           lupus familiaris]
          Length = 532

 Score = 58.4 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 21/57 (36%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            K     +Y    + GP H+ RFT    I      +    SK+ A   AA   L+  
Sbjct: 19  QKHRKVLKYNELSKEGPAHNLRFTFQAIIDEREYPEAEGKSKKEARNTAAKLALEIL 75



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E       GP+   RF    +I       G   +K+ A+ +AA    ++ 
Sbjct: 119 VNYEQWELKDCGPE---RFHCRCKIGQKEYDIGKGATKQEAKHLAAKFAYEQI 168


>gi|73953912|ref|XP_868235.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
           isoform 4 [Canis familiaris]
          Length = 133

 Score = 58.4 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 21/57 (36%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +   K     GP H   +TV V   G     G   S + AE  AA + L++  
Sbjct: 36  WASQSFHSKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 92


>gi|291414566|ref|XP_002723530.1| PREDICTED: RNA-specific adenosine deaminase B1 isoform 2
           [Oryctolagus cuniculus]
          Length = 715

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G A  +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQAF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|291414564|ref|XP_002723529.1| PREDICTED: RNA-specific adenosine deaminase B1 isoform 1
           [Oryctolagus cuniculus]
          Length = 701

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G A  +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFVMSVEVNGQAF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|16331355|ref|NP_442083.1| ribonuclease III [Synechocystis sp. PCC 6803]
 gi|2500555|sp|Q55637|RNC2_SYNY3 RecName: Full=Ribonuclease 3 2; AltName: Full=Ribonuclease III 2;
           Short=RNase III 2
 gi|1001526|dbj|BAA10153.1| ribonuclease III [Synechocystis sp. PCC 6803]
          Length = 244

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 78/203 (38%), Gaps = 10/203 (4%)

Query: 5   RYSTLEKRIGY---AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   L +R+G       + +L++ ALTH+S   S +++Y++LEF+GD ++ L  + +L  
Sbjct: 10  QLKALLRRLGLTDNTPVDWNLVDLALTHAS--QSPEQNYQQLEFVGDAVVRLASAEVLMK 67

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H+     GE+S     LVS  T +       L  F+ ++  +  D    ++ +       
Sbjct: 68  HYPQTSVGEMSALRAILVSDRTLAGWGELYGLDRFLWITPAVLADKNGRVSLMADSFEAL 127

Query: 122 LIAALYLDGGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           L A     G + +   ++ ++      +              +    AH K       + 
Sbjct: 128 LGALYLSVGDLSLIRPWLSEHLLAKATEIRQDPALHNYKEALQAWTQAHYKCLPEYRVEP 187

Query: 178 TFRSGPDHDPRFTVVVEISGLAP 200
             ++ P     F   V +     
Sbjct: 188 LDQNLPQQSG-FQATVWLGDQPL 209


>gi|297462872|ref|XP_002702377.1| PREDICTED: adenosine deaminase, RNA-specific, B1 (RED1 homolog rat)
           [Bos taurus]
 gi|297471374|ref|XP_002685172.1| PREDICTED: adenosine deaminase, RNA-specific, B1 (RED1 homolog rat)
           [Bos taurus]
 gi|296490897|gb|DAA33010.1| adenosine deaminase, RNA-specific, B1 [Bos taurus]
          Length = 748

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 94  QYTLLSQTGPVHAPLFLMSVEVNGQVF-EGSGPTKKKAKLHAAEKALR 140



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 249 YDFLSESGESHAKNFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|225457085|ref|XP_002280078.1| PREDICTED: similar to NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA
           binding / ribonuclease III [Vitis vinifera]
 gi|297733813|emb|CBI15060.3| unnamed protein product [Vitis vinifera]
          Length = 183

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +L   TL+K+IGY F +  LL +A+THSS S     + + L  LG   +   +S      
Sbjct: 38  SLALETLQKQIGYTFQSIGLLRRAMTHSSFSEE---NNKALSILGASTIETSVSLQYLKK 94

Query: 63  FDSAKEGELSVRFNSLVSAETCS 85
              A   +L+ R + +   E+  
Sbjct: 95  DIEASAKDLNRRISEISQVESSC 117


>gi|326931869|ref|XP_003212046.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           1-like isoform 2 [Meleagris gallopavo]
          Length = 684

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           T  SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 289 TKESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAIAVLEELK 334



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G+  A+GM  +K+ A++ 
Sbjct: 369 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GVHTAEGMGTNKKVAKRN 427

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 428 AAENMLEILG 437


>gi|326931867|ref|XP_003212045.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           1-like isoform 1 [Meleagris gallopavo]
          Length = 712

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           T  SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 301 TKESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAIAVLEELK 346



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G+  A+GM  +K+ A++ 
Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GVHTAEGMGTNKKVAKRN 439

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 440 AAENMLEILG 449


>gi|224078725|ref|XP_002188609.1| PREDICTED: staufen [Taeniopygia guttata]
          Length = 697

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           T  SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 301 TKESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAIAVLEELK 346



 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 33/70 (47%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V  SG+  A+GM  +K+ A++ 
Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVGESGVHTAEGMGTNKKVAKRN 440

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 441 AAENMLEILG 450


>gi|61098218|ref|NP_001012849.1| double-stranded RNA-binding protein Staufen homolog 1 [Gallus
           gallus]
 gi|53136660|emb|CAG32659.1| hypothetical protein RCJMB04_32c1 [Gallus gallus]
          Length = 712

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           T  SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 301 TKESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAIAVLEELK 346



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G+  A+GM  +K+ A++ 
Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GVHTAEGMGTNKKVAKRN 439

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 440 AAENMLEILG 449


>gi|328784437|ref|XP_624606.3| PREDICTED: RISC-loading complex subunit tarbp2-like [Apis
           mellifera]
          Length = 383

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           TP+Y++    G  H+P F   V ++    A G   SK+ A+  AA  VL + 
Sbjct: 85  TPKYELIQVEGAIHEPIFRYRVTVAD-VVAMGTGKSKKEAKHAAARAVLDKL 135



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
           K   +    LQE   ++    P+Y +    G  H+ +FT+V  +       G   SK+ A
Sbjct: 167 KIITNPIGALQEMCMSRHWPPPKYTIENEEGLPHERQFTIVCSVL-KYREVGQGKSKKVA 225

Query: 212 EQVAAAEVLKRE 223
           ++ AA ++ +  
Sbjct: 226 KRHAAHKMWQAL 237


>gi|225436071|ref|XP_002272355.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 562

 Score = 58.4 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 40/162 (24%), Gaps = 3/162 (1%)

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
                 S      +       S       ++ LD   +          +    T      
Sbjct: 154 HSTETHSHGSSVRNDLQYQYKSQLQNYARSKNLDAPLYSSKCDGPHHALRFKATVTIDGH 213

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
                         E A   V      +           K  L E A  +    P+Y+  
Sbjct: 214 TFGSPEFFNTLKKAEHAAAKVALMSLLQDDFQEDDSGFYKNVLLELAQKELFCIPKYETV 273

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219
              GP H P F   V++ G     G    SK+ AE  AA   
Sbjct: 274 KC-GPSHMPTFFSTVKVDGE-IFHGKAGRSKKQAEMKAAKAA 313



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 15/46 (32%), Gaps = 1/46 (2%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLKRE 223
              GP H  RF   V I G          + + AE  AA   L   
Sbjct: 194 KCDGPHHALRFKATVTIDGHTFGSPEFFNTLKKAEHAAAKVALMSL 239



 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219
            GPDH P F   V ++GL+        S + A   AA   
Sbjct: 25  DGPDHLPHFKASVYVNGLSFHSPTISTSSKQAHNQAAKLA 64


>gi|299748332|ref|XP_001837616.2| double-stranded RNA binding domain-containing protein-containing
           protein [Coprinopsis cinerea okayama7#130]
 gi|298407924|gb|EAU84240.2| double-stranded RNA binding domain-containing protein-containing
           protein [Coprinopsis cinerea okayama7#130]
          Length = 435

 Score = 58.0 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 176 KVTFRSGPDH--------DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             +    PDH        +P + V V + G    +G   +K+AA   AA E L + GI
Sbjct: 376 WYSDPCVPDHLRIKSSPLNPVWYVKVLVDGEFYGRGRGNTKKAARNEAAKEGLVKLGI 433



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 77/194 (39%), Gaps = 17/194 (8%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS-----------HSYQESYERLEFLGDRI 50
           + + +  L +       NR++  +  TH S             +      ER E LGD +
Sbjct: 84  NNVNFPPLPEI-----TNRNIELQVFTHRSYHARPTHVFEDHINDLSPDNERYEHLGDTV 138

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           LGL+++ L+F+ F   + G  +   + +V   T ++++++  L   +R+           
Sbjct: 139 LGLVVTNLMFDMFPGLRVGPSTKIRSLVVGNSTLAEISKKYRLPDRLRLHQAQAIT-LRA 197

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
            T++QADV E+ +  L+ D  +     +++  ++  A  +  + R           + + 
Sbjct: 198 STNVQADVFEAFVGGLFKDQDLPAVQRWLNPLFRPYAKAAYDYVRKQTNLPPLPPSSHYL 257

Query: 171 VTPEYKVTFRSGPD 184
                     S P+
Sbjct: 258 SRNGASNNGSSHPE 271


>gi|201068|gb|AAA40150.1| serine/threonine-specific protein kinase [Mus musculus]
          Length = 518

 Score = 58.0 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 20/57 (35%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                  GV   YK    SGP HD RFT  V I      +    SK  A   AA   
Sbjct: 14  NKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFGEAKGRSKTEARNAAAKLA 70



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            RF    +I       G   +K+ A+Q+AA E  ++ 
Sbjct: 124 QRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKL 160


>gi|291241541|ref|XP_002740673.1| PREDICTED: RNA-specific adenosine deaminase B1-like [Saccoglossus
           kowalevskii]
          Length = 618

 Score = 58.0 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           ++    RSGP H P F + V++ G    +G  CS + A+ + A + LK
Sbjct: 84  QFIEVSRSGPPHAPVFVMGVKVDGQ-YFEGKGCSIKQAKHIVAKQALK 130



 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
                  Y     SG  H+  +T+ V++   A  QG   +K   +  AA   L +  +
Sbjct: 173 YNPGPIIYDTLSESGNGHEKMYTMAVKVGD-AVFQGTGANKHQGKMAAARAALSQLNV 229


>gi|321468486|gb|EFX79471.1| hypothetical protein DAPPUDRAFT_244860 [Daphnia pulex]
          Length = 118

 Score = 58.0 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    L EW   +    PEY+V  +SGP H   + +  ++S     +G+  SK+AA+  A
Sbjct: 47  NPSGVLSEWRLTRHSTLPEYRVVRKSGPSHSKTYFMTCKLS-ERVTEGVGKSKKAAKNDA 105

Query: 216 AAEVLKRE 223
           A ++L+  
Sbjct: 106 AQKMLQIL 113


>gi|316979346|gb|EFV62151.1| ribosome biogenesis protein BOP1 [Trichinella spiralis]
          Length = 983

 Score = 58.0 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
               LQE+   K  + P +      G  HD  F V VE+       G   SK+ A+Q AA
Sbjct: 779 YVNVLQEFCIQKHYLKPVFTEEGMCGAQHDQTFFVSVELGEYKK-TGSGRSKKLAKQNAA 837

Query: 217 AEVL 220
             +L
Sbjct: 838 HLML 841



 Score = 44.1 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 48/175 (27%), Gaps = 7/175 (4%)

Query: 48  DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
           D  +         +    A          + VS +  +++        + ++   +   +
Sbjct: 550 DNTIKPCKVFRYHDSGVRAVACHGRYPLFASVSDDATAKIFHCTVYNDYDKMPLIVPLKI 609

Query: 108 CSFMTSIQADVVESLIAAL------YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
                 ++                 +  G   V   F          +       +   L
Sbjct: 610 LRSHRKVETVGSILDCTFHPTQPWLFTSGADGVICLFTGLKVSMTTAEGCNKGVKSPLSL 669

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
                 K G+TP Y++    G   D  F   + I     + G   SK+ A+Q AA
Sbjct: 670 LHEICGKKGLTPMYELLTSQGQGVDSLFVYRLCID-SVVSTGRGKSKKLAKQNAA 723


>gi|164508746|emb|CAM07148.1| double stranded RNA activated protein kinase 2 [Tetraodon
           nigroviridis]
          Length = 424

 Score = 58.0 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           Y+     GPDH  RF V   ++G A  +G   +KR A+  AA         WT
Sbjct: 21  YEDVGCDGPDHIKRFRVRAIVNGRAFPEGAGKNKRDAKHKAAENA------WT 67


>gi|90704799|dbj|BAE92294.1| similarity to ribonuclease III [Cryptomeria japonica]
          Length = 191

 Score = 58.0 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 1   MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIST 57
           M A        L+ +I Y F +++LL  A+TH+S S    ++   L  LG  I+   IS 
Sbjct: 31  MEASDDAAIKALQTKIRYQFKDQTLLILAITHASYSF---DNNGALNVLGYNIIQAAISL 87

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
               +  +   G+L  + + L +    S+ A +L L   I+V+  +     S +      
Sbjct: 88  HYVLNNSAIGSGDLHSKISELSNCTVLSKDAFDLQLHDLIKVAPKINPKKQSILCGCYRA 147

Query: 118 VVESL 122
           +  ++
Sbjct: 148 LFGAI 152


>gi|84616741|emb|CAJ47419.1| RNA-specific adenosine deaminase [Gallus gallus]
          Length = 853

 Score = 58.0 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 33/100 (33%)

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           + ++          F   +      K    +                   E+ +  +SGP
Sbjct: 109 SIMHTQSSPSYTAQFNTIFPCTPVEKLLACQEKNPVSGLTEYSQFTYQHCEFTMLEQSGP 168

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            H+PRF     I+G         SK+ A+Q AAA  ++  
Sbjct: 169 SHEPRFKFQAVINGRPFPPAEAGSKKLAKQEAAANAMRIL 208



 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             + GP HDPRF+  V++        +  SK+ A+Q+AA   +K  
Sbjct: 278 LSQDGPPHDPRFSYCVKMGDQIFPAVVGNSKKGAKQMAAEVAVKIL 323



 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             ++GP HDP+F    ++ G         SK+  +Q AA   L+  
Sbjct: 395 IDQTGPPHDPKFVYQAKVGGRWFPAVTAHSKKQGKQEAADAALRVL 440


>gi|195045715|ref|XP_001992024.1| GH24441 [Drosophila grimshawi]
 gi|193892865|gb|EDV91731.1| GH24441 [Drosophila grimshawi]
          Length = 633

 Score = 58.0 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 3/115 (2%)

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
             +    +     E  +         +            +     +     K  +     
Sbjct: 6   NNNIEQHVVNSSTEENMNGYNRKSPQKRRYDMPQYAASPKKKLCKERVPQPKNTVAMLNE 65

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            + G    YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 66  LRQG--LIYKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATALR 117


>gi|16741143|gb|AAH16422.1| Eif2ak2 protein [Mus musculus]
 gi|117616338|gb|ABK42187.1| Prkr [synthetic construct]
 gi|148706522|gb|EDL38469.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Mus
           musculus]
          Length = 515

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 21/57 (36%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                  GV   YK    SGP HD RFT  V I      +    SK+ A   AA   
Sbjct: 14  NKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGKSKQEARNAAAKLA 70



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            RF    +I       G   +K+ A+Q+AA E  ++ 
Sbjct: 124 QRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKL 160


>gi|41055520|ref|NP_957219.1| double-stranded RNA-binding protein Staufen homolog 2 [Danio rerio]
 gi|28277474|gb|AAH45292.1| Staufen, RNA binding protein, homolog 2 (Drosophila) [Danio rerio]
          Length = 653

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G     G   +K+ A++ 
Sbjct: 353 MNPISRLAQIQQAKKEKEPEYMLLSERGMPRRREFIMQVKV-GTEVTTGTGPNKKVAKRN 411

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 412 AAEAMLLQLG 421



 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 54/163 (33%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    + +    T   A    +
Sbjct: 160 YRPLDPKPIPNYRANYNFRGMFNQRYHYPVPKVFYVQLTVGNNEFIGEGRTRQAARHNAA 219

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L               +++  +       ++  L      K  +   ++V   S
Sbjct: 220 MKALQALKNEPIPERP-PQCSEEKKETEENSDASKSEISLVYEIALKRNLPVNFEVLKES 278

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  +L+   
Sbjct: 279 GPPHMKSFLTRVTV-GEFSAEGEGNSKKLSKKRAALSILQELK 320



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
                    +      L         + P+YK+    GP H   FTV + +      +  
Sbjct: 43  PPQENMANPKEKTPMCLVNELARFNRIQPQYKLLNEKGPAHAKIFTVQLCLGNQVW-ESE 101

Query: 205 DCSKRAAEQVAAAEVL 220
             S + A+   A + L
Sbjct: 102 GSSIKKAQHSTATKAL 117


>gi|73919457|sp|Q7ZW47|STAU2_DANRE RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2
          Length = 606

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G     G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPEYMLLSERGMPRRREFIMQVKV-GTEVTTGTGPNKKVAKRN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 54/163 (33%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    + +    T   A    +
Sbjct: 113 YRPLDPKPIPNYRANYNFRGMFNQRYHYPVPKVFYVQLTVGNNEFIGEGRTRQAARHNAA 172

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L               +++  +       ++  L      K  +   ++V   S
Sbjct: 173 MKALQALKNEPIPERP-PQCSEEKKETEENSDASKSEISLVYEIALKRNLPVNFEVLKES 231

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  +L+   
Sbjct: 232 GPPHMKSFLTRVTV-GEFSAEGEGNSKKLSKKRAALSILQELK 273



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         + P+YK+    GP H   FTV + +      +    S +
Sbjct: 1   MANPKEKTPMCLVNELARFNRIQPQYKLLNEKGPAHAKIFTVQLCLGNQVW-ESEGSSIK 59

Query: 210 AAEQVAAAEVL 220
            A+   A + L
Sbjct: 60  KAQHSTATKAL 70


>gi|73961632|ref|XP_547564.2| PREDICTED: similar to adenosine deaminase, RNA-specific isoform b
           [Canis familiaris]
          Length = 1119

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + + +          +    +            +    ++  + L E+A      T E+ 
Sbjct: 383 NSIHAAPGEFRAIMEMPSFYSHGWPRCSPYKKLTECQLKNPISGLLEYAQ-FASQTCEFN 441

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +  +SGP H+PRF   V I G         SK+ A+Q AA + 
Sbjct: 442 LLEQSGPPHEPRFKFQVIIGGREFPPAEAGSKKVAKQDAALKA 484



 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 35/96 (36%)

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            D  +E       +        +  F              K G + E+++  R GP HDP
Sbjct: 504 YDCSMEKGSEKTAEAQPSTPSATSFFSGKNPVTTLLECVHKLGSSCEFRLLSREGPAHDP 563

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F   V +           SK+ A+Q+AA E +K  
Sbjct: 564 KFQYCVAMGAHTFPTVSAPSKKVAKQMAAEEAMKAL 599



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 666 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 711


>gi|200210|gb|AAA39885.1| 65 kD protein kinase [Mus musculus]
          Length = 515

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 21/57 (36%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                  GV   YK    SGP HD RFT  V I      +    SK+ A   AA   
Sbjct: 14  NKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLA 70



 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            RF    +I       G    K+ A+Q+AA E  ++ 
Sbjct: 124 QRFICKCKIGQTMYGTGSGVIKQEAKQLAAKEAYQKL 160


>gi|195347707|ref|XP_002040393.1| GM19166 [Drosophila sechellia]
 gi|194121821|gb|EDW43864.1| GM19166 [Drosophila sechellia]
          Length = 602

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y     +  G  + KY   +     +     K  +      + G    YK+  ++GP H 
Sbjct: 21  YNQKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVGMLNELRHG--LIYKLESQTGPVHA 78

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P FT+ VE+       G   SK+ A   AAA  L+
Sbjct: 79  PLFTISVEVDDQKY-YGQGRSKKIARIEAAATALR 112


>gi|213512316|ref|NP_001134804.1| Interferon-induced, double-stranded RNA-activated protein kinase
           [Salmo salar]
 gi|209736186|gb|ACI68962.1| Interferon-induced, double-stranded RNA-activated protein kinase
           [Salmo salar]
          Length = 181

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            +           +++     GPDH   FT+ V I G A   G+  +K+ A++ AA   L
Sbjct: 11  FEYAQRQGQISDIKFEEVGTDGPDHLKTFTLRVVIKGHAYPNGVGKTKKEAKRNAAKHAL 70



 Score = 36.8 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/100 (11%), Positives = 28/100 (28%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +LI  +      + + +         A          K       H++        +  
Sbjct: 68  HALIGMMETTEQKDASVSCPPSPAPSPAPPVRAVISQPKYVSWLNEHSQKNKLSLKALEG 127

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                ++        +      +G   +K+ A++ AA +V
Sbjct: 128 ARVGPNNTSQCCRYVVGEKEYPEGFGNTKKEAKEEAAMQV 167


>gi|224084072|ref|XP_002188254.1| PREDICTED: adenosine deaminase, RNA-specific [Taeniopygia guttata]
          Length = 926

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 33/100 (33%)

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
             +        A  F   +    A K    +                   ++ +  ++GP
Sbjct: 182 CIMDSQSSPSYAAQFETAFPCTPAEKLIACQEKNPVSGLTEYSQYTYQHCDFIMLEQNGP 241

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            H+PRF     I+G         SK+ A+Q AAA  +K  
Sbjct: 242 SHEPRFKFQAVINGRQFPPAEAGSKKLAKQEAAANAMKVL 281



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 31/68 (45%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
                +      K G   E+++  + GP HDPRF+  V++        +  SK+ A+Q+A
Sbjct: 329 KHPISILMEYGQKSGNIIEFQLLSQEGPPHDPRFSYCVKMGDQIFPAVVGNSKKGAKQMA 388

Query: 216 AAEVLKRE 223
           A   +K  
Sbjct: 389 AEVAVKIL 396



 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP HDP+F    ++ G         +K+  +Q AA   L+  
Sbjct: 467 IDQSGPPHDPKFVYQAKVGGRWFPAVTAHNKKQGKQEAADAALRVL 512


>gi|118102165|ref|XP_001232162.1| PREDICTED: similar to RNA-specific adenosine deaminase [Gallus
           gallus]
          Length = 853

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 34/100 (34%)

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           + ++       A  F   +      K    +                   E+ +  +SGP
Sbjct: 109 SIMHTQSSPSYAAQFNTIFPCTPVEKLLACQEKNPVSGLTEYSQFTYQHCEFTMLEQSGP 168

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            H+PRF     I+G         SK+ A+Q AAA  ++  
Sbjct: 169 SHEPRFKFQAVINGRPFPPAEAGSKKLAKQEAAANAMRIL 208



 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             + GP HDPRF+  V++        +  SK+ A+Q+AA   +K  
Sbjct: 278 LSQDGPPHDPRFSYCVKMGDQIFPAVVGNSKKGAKQMAAEVAVKIL 323



 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             ++GP HDP+F    ++ G         SK+  +Q AA   L+  
Sbjct: 395 IDQTGPPHDPKFVYQAKVGGRWFPAVTAHSKKQGKQEAADAALRVL 440


>gi|229891681|sp|B6P4U0|TRBP2_BRAFL RecName: Full=Probable RISC-loading complex subunit
           BRAFLDRAFT_242885
          Length = 319

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 1/102 (0%)

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
               +     + +    +       +        +   +LQE    +    PEY V    
Sbjct: 86  FFYNIMHIFDLCIFYCPIPPSTYSESGGVLTPPDNPIGQLQELVVERGWRLPEYIVISEQ 145

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GP H   FT+ V++       G   SK+AA++ AA  +L R 
Sbjct: 146 GPPHCKEFTIQVKVE-KFKDTGTGSSKKAAKRSAAGVLLTRL 186


>gi|28277444|gb|AAH44344.1| Adar protein [Danio rerio]
          Length = 917

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +      + G   ++  T + GP HDPRF   V++      +    SK+AA Q+AA E +
Sbjct: 747 VLMEHSQRSGHPIQFIKTGQEGPSHDPRFMFRVKVGERLFQEASAPSKKAARQLAAEEAV 806

Query: 221 KRE 223
           K  
Sbjct: 807 KEL 809



 Score = 38.0 bits (86), Expect = 0.94,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                  G T E+ +  +SGP HDPRF + V + G         +
Sbjct: 634 MEFAQHLGYTCEFLLLEQSGPSHDPRFRMQVMLDGRRFPAAEGSN 678


>gi|18858253|ref|NP_571671.1| double-stranded RNA-specific adenosine deaminase [Danio rerio]
 gi|7770273|gb|AAF69672.1| double-stranded RNA-specific editase [Danio rerio]
          Length = 1382

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +      + G   ++  T + GP HDPRF   V++      +    SK+AA Q+AA E +
Sbjct: 747 VLMEHSQRSGHPIQFIKTGQEGPSHDPRFMFRVKVGERLFQEASAPSKKAARQLAAEEAV 806

Query: 221 KRE 223
           K  
Sbjct: 807 KEL 809



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+FT   ++ G         +K+  +Q AA   L+  
Sbjct: 890 VGQSGPSHEPKFTYQAKLGGRWFPAVCASNKKQGKQEAADAALRVL 935



 Score = 38.0 bits (86), Expect = 0.94,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                  G T E+ +  +SGP HDPRF + V + G         +
Sbjct: 634 MEFAQHLGYTCEFLLLEQSGPSHDPRFRMQVMLDGRRFPAAEGSN 678


>gi|327303976|ref|XP_003236680.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892]
 gi|326462022|gb|EGD87475.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892]
          Length = 1460

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             S +E  I Y+F  ++LL  +L+H S +     +Y+RLEFLGD IL  +++  LF     
Sbjct: 1178 LSKVEPLIEYSFTKKALLAASLSHPS-NPISGMTYQRLEFLGDSILDNIVTRALFRCKKE 1236

Query: 66   AKEGELSVRFNSLVSAETCSQVARE 90
                ++ +   +LV+A+  + +   
Sbjct: 1237 IPHQDMHLIRTALVNADFLAFLCMN 1261



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F N  L+  A+T +S       +Y+RLEFLGD  L L  S  L        EG LS + +
Sbjct: 1003 FQNIQLVLTAITAASAREDI--NYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKD 1060

Query: 77   SLVSAETCSQVARELDLASFIRVSS 101
            S+VS     + A +  L  FI  + 
Sbjct: 1061 SIVSNSRLWKAAVDTGLDQFILTTC 1085


>gi|21430030|gb|AAM50693.1| GM01981p [Drosophila melanogaster]
          Length = 489

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRA 210
              +     L E       + P+YK+    GP H+  F   VEI+G          +K+ 
Sbjct: 411 TQDKHPVCVLNELTSKNKWMPPQYKLRQDIGPAHNRSFLFSVEINGQTFTPDRGSNNKKE 470

Query: 211 AEQVAAAEVLKREGIW 226
           A+  AAA  L+  GI 
Sbjct: 471 AKLNAAALCLRSLGIL 486


>gi|25009833|gb|AAN71087.1| AT18855p [Drosophila melanogaster]
          Length = 886

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRA 210
              +     L E       + P+YK+    GP H+  F   VEI+G          +K+ 
Sbjct: 808 TQDKHPVCVLNELTSKNKWMPPQYKLRQDIGPAHNRSFLFSVEINGQTFTPDRGSNNKKE 867

Query: 211 AEQVAAAEVLKREGIW 226
           A+  AAA  L+  GI 
Sbjct: 868 AKLNAAALCLRSLGIL 883


>gi|24645429|ref|NP_649914.1| CG8273 [Drosophila melanogaster]
 gi|7299212|gb|AAF54409.1| CG8273 [Drosophila melanogaster]
          Length = 874

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRA 210
              +     L E       + P+YK+    GP H+  F   VEI+G          +K+ 
Sbjct: 796 TQDKHPVCVLNELTSKNKWMPPQYKLRQDIGPAHNRSFLFSVEINGQTFTPDRGSNNKKE 855

Query: 211 AEQVAAAEVLKREGIW 226
           A+  AAA  L+  GI 
Sbjct: 856 AKLNAAALCLRSLGIL 871


>gi|284050833|ref|ZP_06381043.1| ribonuclease III [Arthrospira platensis str. Paraca]
          Length = 120

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 5/95 (5%)

Query: 5   RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   L +R+G +  ++    LL+ ALTH S+S   Q++YE+LEF+GD ++ L  S LLF 
Sbjct: 15  QLEKLIERLGLSPQHKIAWQLLDLALTHPSVSS--QDNYEQLEFVGDSVVRLAASELLFE 72

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
            + +A  GE +   + LVS    ++++    L  +
Sbjct: 73  TYPNAPVGEFAAVRSILVSDRILAEISESYGLGRY 107


>gi|260800185|ref|XP_002595015.1| hypothetical protein BRAFLDRAFT_237436 [Branchiostoma floridae]
 gi|229280255|gb|EEN51026.1| hypothetical protein BRAFLDRAFT_237436 [Branchiostoma floridae]
          Length = 634

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++  +SGP H P F + VE++G    +G   +K+ A+  AA +VL+
Sbjct: 33  QYRLISQSGPPHAPEFVMSVEMNGQTF-KGRGRTKKEAKLRAAEQVLR 79



 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +G  H   F + V I G    +G   SK+ A+  AA   L+  
Sbjct: 177 VSETGESHAKNFVMAVTIDGRT-CEGSGRSKKLAKIRAAQAALQEI 221


>gi|170090528|ref|XP_001876486.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647979|gb|EDR12222.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 356

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           P + V V + G    +G   +K+AA   AA E L++ GI
Sbjct: 316 PVWYVKVMVDGEFYGRGRGNTKKAARNEAAKEGLEKMGI 354


>gi|148228849|ref|NP_001080784.1| staufen, RNA binding protein, homolog 2 [Xenopus laevis]
 gi|28302215|gb|AAH46732.1| Stau2-a protein [Xenopus laevis]
          Length = 685

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 388 MNPISRLAQIQQAKKEKEPEYVLLSERGIQRRREFIMQVKV-GEETATGTGPNKKIAKRN 446

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 447 AAEAMLLQLG 456



 Score = 44.1 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 1/74 (1%)

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  +      L         + P+YK+    GP H   FTV + +      Q    
Sbjct: 80  HDNMTNPKEKTPMCLVNELARFNRIQPQYKLLDERGPAHSKLFTVQLTLGEQTW-QAEST 138

Query: 207 SKRAAEQVAAAEVL 220
           S + ++  AA+  L
Sbjct: 139 SIKKSQHAAASLAL 152


>gi|195162123|ref|XP_002021905.1| GL14352 [Drosophila persimilis]
 gi|194103803|gb|EDW25846.1| GL14352 [Drosophila persimilis]
          Length = 619

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 3/118 (2%)

Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
           +    + +    A+  E+ +         +            +     +     K  +  
Sbjct: 3   KSANNNSLQHPVANTSENTMNGYNRKVPPKRRYEMPKYAAPPKKKTCKERIPQPKNTVAM 62

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               + G    YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 63  LNELRNG--LIYKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATALR 117


>gi|158341011|ref|YP_001522178.1| exoribonuclease II [Acaryochloris marina MBIC11017]
 gi|158311252|gb|ABW32864.1| exoribonuclease II [Acaryochloris marina MBIC11017]
          Length = 623

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/186 (9%), Positives = 53/186 (28%), Gaps = 5/186 (2%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           + LE+LGD +     ++++    +  +    S            + +   +    +    
Sbjct: 426 QVLEYLGDHLYD--AASIVSIALNQIEAWHSSAYVEVSQEPPFMTWLEILIGEQLWTTAK 483

Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
             +  +            +++      +      A         +      K R+  +  
Sbjct: 484 PGISMNKTGAKHQACLAWLKAKFEGTLVHPEHREAPPIPQPSAPKPPPVIHKLRQYQEGH 543

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAA 217
                  +     ++        +H+  F     +     +    G+  SK+ A+  AA 
Sbjct: 544 NCLSLLMELCQGLQWPQAEFEIVEHEQGFHCECRLKVDDEVIIGSGIASSKKTAKHRAAR 603

Query: 218 EVLKRE 223
            V+++ 
Sbjct: 604 PVVEQL 609


>gi|6755160|ref|NP_035293.1| interferon-induced, double-stranded RNA-activated protein kinase
           [Mus musculus]
 gi|2507204|sp|Q03963|E2AK2_MOUSE RecName: Full=Interferon-induced, double-stranded RNA-activated
           protein kinase; AltName: Full=Eukaryotic translation
           initiation factor 2-alpha kinase 2; Short=eIF-2A protein
           kinase 2; AltName: Full=Interferon-inducible
           RNA-dependent protein kinase; AltName: Full=P1/eIF-2A
           protein kinase; AltName: Full=Protein kinase
           RNA-activated; Short=PKR; AltName:
           Full=Serine/threonine-protein kinase TIK; AltName:
           Full=p68 kinase
 gi|536918|gb|AAC24729.1| interferon-inducible RNA-dependent protein kinase [Mus musculus]
 gi|26324546|dbj|BAC26027.1| unnamed protein product [Mus musculus]
          Length = 515

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 21/57 (36%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                  GV   YK    SGP HD RFT  V I      +    SK+ A   AA   
Sbjct: 14  NKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLA 70



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            RF    +I       G   +K+ A+Q+AA E  ++ 
Sbjct: 124 QRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKL 160


>gi|198470865|ref|XP_001355419.2| GA11711 [Drosophila pseudoobscura pseudoobscura]
 gi|198145657|gb|EAL32477.2| GA11711 [Drosophila pseudoobscura pseudoobscura]
          Length = 633

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 3/118 (2%)

Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
           +    + +    A+  E+ +         +            +     +     K  +  
Sbjct: 3   KSANNNSLQHPVANSSENTMNGYNRKVPPKRRYEMPKYAAPPKKKTCKERIPQPKNTVAM 62

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               + G    YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 63  LNELRNG--LIYKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATALR 117


>gi|302845712|ref|XP_002954394.1| hypothetical protein VOLCADRAFT_106340 [Volvox carteri f.
            nagariensis]
 gi|300260324|gb|EFJ44544.1| hypothetical protein VOLCADRAFT_106340 [Volvox carteri f.
            nagariensis]
          Length = 2391

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
                +E+ +G+ FA+  L  +ALTH S   + S    Y+R+EFLGD +LG++ S   F  
Sbjct: 2108 NVLAVEELLGHTFAHPKLCVQALTHVSHPTASSCGGGYQRVEFLGDGVLGMVASVWAFCS 2167

Query: 63   FDSAKE 68
              S   
Sbjct: 2168 VPSRDT 2173


>gi|224135779|ref|XP_002322158.1| predicted protein [Populus trichocarpa]
 gi|222869154|gb|EEF06285.1| predicted protein [Populus trichocarpa]
          Length = 160

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 4/120 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             TL+ + GYAF N   L +A+THSS S     + + L  LG  ++   +S         
Sbjct: 18  LDTLQNQTGYAFKNIGYLRRAMTHSSFSEE---NNKALSILGSNVIDTSVSMYYLGKDAE 74

Query: 66  AKEGELSVRFNSLVSAETCS-QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               +L+ R       +T        L L   +RVS          + S    +  ++  
Sbjct: 75  ISSKDLNRRIADNSKVDTSCAVDGMRLGLHKVVRVSPKTNSTTPLVVCSAFRALFGAIAI 134


>gi|321457596|gb|EFX68679.1| hypothetical protein DAPPUDRAFT_259733 [Daphnia pulex]
          Length = 402

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  E  + Y   ++ +L +A TH   +    ++Y+RLE +GD  LG +         + 
Sbjct: 84  LAKFENILHYTSNDKEVLLEAFTH--GNSMKSQNYQRLELIGDAALGDITKLRSACVCND 141

Query: 66  AKEGELSVRFNSLVSAE 82
                 +          
Sbjct: 142 IFGVWAAKYGFHEHVQN 158



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFD 64
               E+ + Y+F  + +L +ALT     +S +  +Y+RLE +GD  L         +   
Sbjct: 315 VKAFEEILNYSFNYKEVLLEALT---YGNSIRSLNYQRLEVIGDAALDYPSIFFSSDSPP 371

Query: 65  SAKEGELSV 73
            +   +L  
Sbjct: 372 VSPFNQLEK 380


>gi|195499487|ref|XP_002096969.1| GE25964 [Drosophila yakuba]
 gi|194183070|gb|EDW96681.1| GE25964 [Drosophila yakuba]
          Length = 908

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRA 210
              +     L E         P+YK+    GP H+  F   VEI+G          +K+ 
Sbjct: 830 TQDKHPVCVLNELTSKNKWTPPQYKLRQDIGPAHNRSFLFSVEINGQTYTPDRGCNNKKE 889

Query: 211 AEQVAAAEVLKREGIW 226
           A+  AA   L+  GI 
Sbjct: 890 AKLNAATLCLRALGIL 905


>gi|194902968|ref|XP_001980797.1| GG16917 [Drosophila erecta]
 gi|190652500|gb|EDV49755.1| GG16917 [Drosophila erecta]
          Length = 892

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRA 210
              +     L E         P+YK+    GP H+  F   VEI+G          +K+ 
Sbjct: 814 TQDKHPVCVLNELTSKNKWTPPQYKLRQDIGPAHNRSFLFSVEINGQTYTPDRGCNNKKE 873

Query: 211 AEQVAAAEVLKREGIW 226
           A+  AA   L+  GI 
Sbjct: 874 AKLNAATLCLRALGIL 889


>gi|47209094|emb|CAF93170.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 673

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 1/101 (0%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y DG ++            R +   K     +         +     +Y++  +SGP H 
Sbjct: 312 YEDGAMDDKDLIKKMKRNLRKVLDSKAIDSNQPMNALMRLNQIRPGLQYRLLSQSGPVHA 371

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           P FT+ V++ G    +    SK+ A+   A +VL+  G  T
Sbjct: 372 PVFTMSVDVDGTVY-EASGSSKKTAKLHVAVKVLQAMGYPT 411



 Score = 34.9 bits (78), Expect = 7.7,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           Y +   SG  HD RF + VE+ G    +G   +
Sbjct: 480 YDLISESGGSHDKRFVMEVEVDGQKF-RGAGPN 511


>gi|12834450|dbj|BAB22917.1| unnamed protein product [Mus musculus]
          Length = 134

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 27/79 (34%)

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
               +    +  +  L      K    P YK     GP H   +TV V   G     G  
Sbjct: 15  NQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKG 74

Query: 206 CSKRAAEQVAAAEVLKREG 224
            S + AE  AA + L++  
Sbjct: 75  PSIQQAEMGAAMDALEKYN 93


>gi|47523704|ref|NP_999484.1| double stranded RNA-dependent protein kinase [Sus scrofa]
 gi|29292936|dbj|BAC66439.1| double stranded RNA-dependent protein kinase [Sus scrofa]
          Length = 537

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G D   +F    +I       G+  +K+ A+Q+AA +  ++ 
Sbjct: 124 GEDGPEKFHYKCKIGRKVYGSGVGSTKQEAKQLAAKQAYEKL 165



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                K  V  +Y+   ++GP H+ RFT  V I      +    SK+ A+  A     + 
Sbjct: 15  NKYQQKNDVILKYRELCKTGPAHNLRFTYQVVIDEKEFPKAEGRSKKEAKNAAVKLAFEI 74

Query: 223 EG 224
             
Sbjct: 75  IN 76


>gi|327271788|ref|XP_003220669.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           1-like isoform 2 [Anolis carolinensis]
          Length = 693

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           T  SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 299 TRESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAIAVLEELK 344



 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G+  A+GM  +K+ A++ 
Sbjct: 379 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GMHTAEGMGTNKKVAKRN 437

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 438 AAENMLELLG 447


>gi|327271786|ref|XP_003220668.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           1-like isoform 1 [Anolis carolinensis]
          Length = 695

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           T  SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 301 TRESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAIAVLEELK 346



 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G+  A+GM  +K+ A++ 
Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GMHTAEGMGTNKKVAKRN 439

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 440 AAENMLELLG 449


>gi|114107707|gb|AAI22893.1| stau1 protein [Xenopus (Silurana) tropicalis]
          Length = 686

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            ++  ++VT  +GP H   F   V + G    +G   SK+ +++ AA  VL+  
Sbjct: 282 NMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGEGEGKSKKISKKNAAISVLEEL 334



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++   + A+GM  +K+ A++ 
Sbjct: 370 MNPISRLAQIQQAKKDKEPEYILITERGLPRRREFVMQVKVGNHS-AEGMGTNKKVAKRN 428

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 429 AAENMLELLG 438


>gi|62858029|ref|NP_001016542.1| staufen, RNA binding protein, homolog 1 [Xenopus (Silurana)
           tropicalis]
          Length = 614

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            ++  ++VT  +GP H   F   V + G    +G   SK+ +++ AA  VL+  
Sbjct: 210 NMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGEGEGKSKKISKKNAAISVLEEL 262



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++   + A+GM  +K+ A++ 
Sbjct: 298 MNPISRLAQIQQAKKDKEPEYILITERGLPRRREFVMQVKVGNHS-AEGMGTNKKVAKRN 356

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 357 AAENMLELLG 366


>gi|89271756|emb|CAJ83112.1| novel protein similar to staufen [Xenopus (Silurana) tropicalis]
          Length = 696

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            ++  ++VT  +GP H   F   V + G    +G   SK+ +++ AA  VL+  
Sbjct: 292 NMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGEGEGKSKKISKKNAAISVLEEL 344



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++   + A+GM  +K+ A++ 
Sbjct: 380 MNPISRLAQIQQAKKDKEPEYILITERGLPRRREFVMQVKVGNHS-AEGMGTNKKVAKRN 438

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 439 AAENMLELLG 448


>gi|321468344|gb|EFX79329.1| hypothetical protein DAPPUDRAFT_244966 [Daphnia pulex]
          Length = 96

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L EW   +    PEY+V   SGP H   + +  ++S     +G   SK+AA+  AA ++L
Sbjct: 30  LSEWRFTRHSSLPEYRVVRTSGPSHSKTYFMTCKLSDRV-TEGEGKSKKAAKNDAAQKML 88

Query: 221 KRE 223
           +  
Sbjct: 89  QIL 91


>gi|296863417|pdb|3ADL|A Chain A, Structure Of Trbp2 And Its Molecule Implications For Mirna
           P
          Length = 88

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              PEY VT  SGP H   FT+   +       G   SK+ A++ AAA++L
Sbjct: 30  WRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNAAAKML 79


>gi|195133919|ref|XP_002011386.1| GI16028 [Drosophila mojavensis]
 gi|193907361|gb|EDW06228.1| GI16028 [Drosophila mojavensis]
          Length = 633

 Score = 57.6 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 3/118 (2%)

Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
                +F+  + +   E  +         +            +     +     K  +  
Sbjct: 3   NSANNNFVQHVVSTSTEGNMNGYNRKSPQKRRYDMPKYAVPPKKKSGKERVPQPKNTVAM 62

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               + G    YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 63  LNELRHG--LIYKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATALR 117


>gi|332207755|ref|XP_003252961.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 3 [Nomascus leucogenys]
          Length = 577

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 208 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 250



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++     A+G   +K+ A++ A
Sbjct: 286 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGTGTNKKVAKRNA 344

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 345 AENMLEILG 353


>gi|332207753|ref|XP_003252960.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 2 [Nomascus leucogenys]
 gi|332207761|ref|XP_003252964.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 6 [Nomascus leucogenys]
          Length = 502

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 133 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 175



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++     A+G   +K+ A++ A
Sbjct: 211 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGTGTNKKVAKRNA 269

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 270 AENMLEILG 278


>gi|332207751|ref|XP_003252959.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 1 [Nomascus leucogenys]
 gi|332207757|ref|XP_003252962.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 4 [Nomascus leucogenys]
 gi|332207759|ref|XP_003252963.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 5 [Nomascus leucogenys]
          Length = 496

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 127 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 169



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++     A+G   +K+ A++ A
Sbjct: 205 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGTGTNKKVAKRNA 263

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 264 AENMLEILG 272


>gi|297259616|ref|XP_001099701.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 3 [Macaca mulatta]
          Length = 529

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 160 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 202



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 227 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGA 285

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 286 GTNKKVAKRNAAENMLEILG 305


>gi|297259614|ref|XP_001099908.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 5 [Macaca mulatta]
          Length = 523

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 154 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 196



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 221 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGA 279

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 280 GTNKKVAKRNAAENMLEILG 299


>gi|296200670|ref|XP_002747678.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           [Callithrix jacchus]
          Length = 577

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 208 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 250



 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 275 PQTTPEYGQGINPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGT 333

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 334 GTNKKVAKRNAAENMLEILG 353


>gi|226371684|ref|NP_001033676.2| double-stranded RNA-specific adenosine deaminase isoform 2 [Mus
           musculus]
          Length = 930

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                  T ++ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 216 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 270



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
              +E       +     +  +  F   +          K G + E+++  + GP HDP+
Sbjct: 291 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 350

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 351 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 385



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 448 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 493


>gi|158256406|dbj|BAF84176.1| unnamed protein product [Homo sapiens]
          Length = 577

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 208 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 250



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 275 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 333

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 334 GTNKKVAKRNAAENMLEILG 353


>gi|149048041|gb|EDM00617.1| adenosine deaminase, RNA-specific, isoform CRA_b [Rattus
           norvegicus]
          Length = 1175

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                  T ++ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 461 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 515



 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 37/95 (38%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           +  +E       +     +  +  F   +          K G + E+++  + GP HDP+
Sbjct: 536 NCPMEEDPEKPAESQPPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 595

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 596 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 630



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 693 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 738


>gi|226371679|ref|NP_062629.3| double-stranded RNA-specific adenosine deaminase isoform 1 [Mus
           musculus]
 gi|148683238|gb|EDL15185.1| adenosine deaminase, RNA-specific, isoform CRA_a [Mus musculus]
          Length = 1152

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                  T ++ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 464 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 518



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
              +E       +     +  +  F   +          K G + E+++  + GP HDP+
Sbjct: 539 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 598

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 599 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 633



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 696 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741


>gi|119596076|gb|EAW75670.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_b
           [Homo sapiens]
          Length = 317

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 127 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 169



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 194 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 252

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 253 GTNKKVAKRNAAENMLEILG 272


>gi|90076086|dbj|BAE87723.1| unnamed protein product [Macaca fascicularis]
          Length = 502

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 133 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 175



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 200 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGA 258

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 259 GTNKKVAKRNAAENMLEILG 278


>gi|114682577|ref|XP_001166582.1| PREDICTED: staufen isoform 1 [Pan troglodytes]
          Length = 497

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 127 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 169



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 194 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 252

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 253 GTNKKVAKRNAAENMLEILG 272


>gi|114682565|ref|XP_514710.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 8 [Pan troglodytes]
          Length = 577

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 208 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 250



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 275 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 333

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 334 GTNKKVAKRNAAENMLEILG 353


>gi|114682575|ref|XP_001166678.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 3 [Pan troglodytes]
          Length = 502

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 133 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 175



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 200 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 258

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 259 GTNKKVAKRNAAENMLEILG 278


>gi|114682567|ref|XP_001166711.1| PREDICTED: staufen isoform 4 [Pan troglodytes]
 gi|114682569|ref|XP_001166741.1| PREDICTED: staufen isoform 5 [Pan troglodytes]
 gi|114682571|ref|XP_001166806.1| PREDICTED: staufen isoform 6 [Pan troglodytes]
 gi|114682573|ref|XP_001166840.1| PREDICTED: staufen isoform 7 [Pan troglodytes]
          Length = 496

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 127 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 169



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 194 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 252

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 253 GTNKKVAKRNAAENMLEILG 272


>gi|114682579|ref|XP_001166642.1| PREDICTED: staufen isoform 2 [Pan troglodytes]
          Length = 492

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 127 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 169



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 194 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 252

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 253 GTNKKVAKRNAAENMLEILG 272


>gi|109091649|ref|XP_001100004.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 6 [Macaca mulatta]
 gi|109091651|ref|XP_001100094.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 7 [Macaca mulatta]
          Length = 577

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 208 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 250



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 275 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGA 333

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 334 GTNKKVAKRNAAENMLEILG 353


>gi|62088702|dbj|BAD92798.1| staufen isoform b variant [Homo sapiens]
          Length = 591

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 222 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 264



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 289 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 347

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 348 GTNKKVAKRNAAENMLEILG 367


>gi|57208665|emb|CAI42821.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens]
          Length = 199

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 133 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 175


>gi|57208663|emb|CAI42819.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens]
          Length = 494

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 127 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 169



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++     A+G   +K+ A++ A
Sbjct: 203 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGTGTNKKVAKRNA 261

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 262 AENMLEILG 270


>gi|226371677|ref|NP_001139768.1| double-stranded RNA-specific adenosine deaminase isoform 3 [Mus
           musculus]
 gi|38372251|sp|Q99MU3|DSRAD_MOUSE RecName: Full=Double-stranded RNA-specific adenosine deaminase;
           Short=DRADA; AltName: Full=RNA adenosine deaminase 1
 gi|148683239|gb|EDL15186.1| adenosine deaminase, RNA-specific, isoform CRA_b [Mus musculus]
          Length = 1178

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                  T ++ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 464 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 518



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
              +E       +     +  +  F   +          K G + E+++  + GP HDP+
Sbjct: 539 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 598

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 599 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 633



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 696 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741


>gi|13272339|gb|AAK17103.1|AF291050_1 RNA adenosine deaminase 1 [Mus musculus]
          Length = 1152

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                  T ++ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 464 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 518



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
              +E       +     +  +  F   +          K G + E+++  + GP HDP+
Sbjct: 539 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 598

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 599 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 633



 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+   Q AA   L+  
Sbjct: 696 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGXQDAADAALRVL 741


>gi|4335947|gb|AAD17530.1| staufen protein [Homo sapiens]
 gi|4335951|gb|AAD17532.1| staufen protein [Homo sapiens]
 gi|4335953|gb|AAD17533.1| staufen protein [Homo sapiens]
          Length = 496

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 127 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 169



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 194 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 252

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 253 GTNKKVAKRNAAENMLEILG 272


>gi|13236214|gb|AAK16102.1|AF291876_1 RNA adenosine deaminase 1 [Mus musculus]
          Length = 1178

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                  T ++ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 464 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 518



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
              +E       +     +  +  F   +          K G + E+++  + GP HDP+
Sbjct: 539 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 598

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 599 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 633



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 696 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741


>gi|2981097|gb|AAC06233.1| double-stranded RNA-specific adenosine deaminase [Mus musculus]
          Length = 1152

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                  T ++ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 464 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 518



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
              +E       +     +  +  F   +          K G + E+++  + GP HDP+
Sbjct: 539 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 598

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 599 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 633



 Score = 46.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+   Q AA   L+  
Sbjct: 696 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGRQDAADAALRVL 741


>gi|4335949|gb|AAD17531.1| staufen protein [Homo sapiens]
          Length = 577

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 208 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 250



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 275 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 333

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 334 GTNKKVAKRNAAENMLEILG 353


>gi|33875035|gb|AAH10169.1| STAU1 protein [Homo sapiens]
          Length = 196

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 133 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 175


>gi|27768964|gb|AAH42505.1| Adenosine deaminase, RNA-specific [Mus musculus]
          Length = 1152

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                  T ++ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 464 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 518



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
              +E       +     +  +  F   +          K G + E+++  + GP HDP+
Sbjct: 539 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 598

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 599 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 633



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 696 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741


>gi|13591904|ref|NP_112268.1| double-stranded RNA-specific adenosine deaminase [Rattus
           norvegicus]
 gi|1706533|sp|P55266|DSRAD_RAT RecName: Full=Double-stranded RNA-specific adenosine deaminase;
           Short=DRADA
 gi|755817|gb|AAA65039.1| double-stranded RNA-specific adenosine deaminase [Rattus
           norvegicus]
          Length = 1175

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                  T ++ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 461 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 515



 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 37/95 (38%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           +  +E       +     +  +  F   +          K G + E+++  + GP HDP+
Sbjct: 536 NCPMEEDPEKPAESQPPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 595

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 596 FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 630



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 693 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 738


>gi|74192520|dbj|BAE43048.1| unnamed protein product [Mus musculus]
          Length = 705

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                  T ++ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 17  YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 71



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
              +E       +     +  +  F   +          K G + E+++  + GP HDP+
Sbjct: 92  HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 151

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 152 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 186



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 249 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 294


>gi|74188545|dbj|BAE28026.1| unnamed protein product [Mus musculus]
          Length = 930

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                  T ++ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 216 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 270



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
              +E       +     +  +  F   +          K G + E+++  + GP HDP+
Sbjct: 291 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 350

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 351 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 385



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 448 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 493


>gi|74140777|dbj|BAC40888.2| unnamed protein product [Mus musculus]
          Length = 1173

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                  T ++ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 464 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 518



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
              +E       +     +  +  F   +          K G + E+++  + GP HDP+
Sbjct: 539 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 598

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 599 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 633



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 696 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741


>gi|71059975|emb|CAJ18531.1| Adar [Mus musculus]
          Length = 1152

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                  T ++ +  +SGP H+PRF   V I+G         SK+ A+Q AA + 
Sbjct: 464 YAQFTSQTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 518



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
              +E       +     +  +  F   +          K G + E+++  + GP HDP+
Sbjct: 539 HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 598

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 599 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 633



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 696 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741


>gi|209364604|ref|NP_001126609.1| double-stranded RNA-binding protein Staufen homolog 1 [Pongo
           abelii]
 gi|55732106|emb|CAH92759.1| hypothetical protein [Pongo abelii]
          Length = 495

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 126 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 168



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 193 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 251

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 252 GTNKKVAKRNAAENMLEILG 271


>gi|82659091|ref|NP_001032405.1| double-stranded RNA-binding protein Staufen homolog 1 isoform c
           [Homo sapiens]
 gi|45758713|gb|AAS76636.1| staufen protein T5 variant [Homo sapiens]
 gi|45758715|gb|AAS76637.1| staufen protein T4 variant [Homo sapiens]
 gi|57208664|emb|CAI42820.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens]
          Length = 502

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 133 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 175



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 200 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 258

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 259 GTNKKVAKRNAAENMLEILG 278


>gi|82659083|ref|NP_004593.2| double-stranded RNA-binding protein Staufen homolog 1 isoform a
           [Homo sapiens]
 gi|82659085|ref|NP_059346.2| double-stranded RNA-binding protein Staufen homolog 1 isoform a
           [Homo sapiens]
 gi|82659089|ref|NP_059348.2| double-stranded RNA-binding protein Staufen homolog 1 isoform a
           [Homo sapiens]
 gi|10944134|emb|CAC14084.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens]
 gi|13276703|emb|CAB66536.1| hypothetical protein [Homo sapiens]
 gi|63102431|gb|AAH95397.1| Staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens]
 gi|119596075|gb|EAW75669.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_a
           [Homo sapiens]
 gi|119596078|gb|EAW75672.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_a
           [Homo sapiens]
 gi|119596080|gb|EAW75674.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_a
           [Homo sapiens]
 gi|158259179|dbj|BAF85548.1| unnamed protein product [Homo sapiens]
          Length = 496

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 127 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 169



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 194 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 252

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 253 GTNKKVAKRNAAENMLEILG 272


>gi|82659087|ref|NP_059347.2| double-stranded RNA-binding protein Staufen homolog 1 isoform b
           [Homo sapiens]
 gi|90185286|sp|O95793|STAU1_HUMAN RecName: Full=Double-stranded RNA-binding protein Staufen homolog 1
 gi|10944135|emb|CAC14085.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens]
 gi|29792190|gb|AAH50432.1| Staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens]
 gi|119596077|gb|EAW75671.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_c
           [Homo sapiens]
 gi|119596079|gb|EAW75673.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_c
           [Homo sapiens]
 gi|168277710|dbj|BAG10833.1| double-stranded RNA-binding protein Staufen homolog 1 [synthetic
           construct]
 gi|190690419|gb|ACE86984.1| staufen, RNA binding protein, homolog 1 (Drosophila) protein
           [synthetic construct]
 gi|190691797|gb|ACE87673.1| staufen, RNA binding protein, homolog 1 (Drosophila) protein
           [synthetic construct]
          Length = 577

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 208 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 250



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 275 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 333

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 334 GTNKKVAKRNAAENMLEILG 353


>gi|4572588|emb|CAB40082.1| staufen protein [Homo sapiens]
          Length = 496

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 127 SGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 169



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 194 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 252

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 253 GTNKKVAKRNAAENMLEILG 272


>gi|324502096|gb|ADY40922.1| Double-stranded RNA-binding protein Staufen [Ascaris suum]
          Length = 906

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 32/80 (40%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +       + +  + L +   A+    P++++    G      F V V  +     +G 
Sbjct: 462 MKMDPEYGHQINPVSRLMQVMQARKENEPKFQLVAEHGQSRYKEFVVEVTCADGLRCEGT 521

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L R G
Sbjct: 522 GPNKKLAKRAAAEAMLARIG 541



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEV 219
                +  +  E+++    GP HD  + +  ++     +  A G   SK+ A+Q A A +
Sbjct: 363 HECALQMRMNVEFEILREEGPAHDRHYLLRCKMISPDEVIIADGEGGSKKIAKQNACALM 422

Query: 220 LKREG 224
           L +  
Sbjct: 423 LTKLK 427



 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 183 PDH--DPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           P H     + V + + + +    G   +K+ A+  AA + L   G
Sbjct: 235 PPHIAQRVYQVRLTLSNDMPEFIGKGPTKQKAKLNAATQALLHLG 279


>gi|301754405|ref|XP_002913051.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           1-like [Ailuropoda melanoleuca]
          Length = 684

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 315 SGPPHMKSFVTRVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 357



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +  + L +   AK    PEY +    G      F + V++     A+G   +K+ 
Sbjct: 388 CSQGMNPISRLAQIQQAKKEKEPEYLLLTERGLPRRREFVMQVKVGNHT-AEGTGTNKKV 446

Query: 211 AEQVAAAEVLKREG 224
           A++ AA  +L+  G
Sbjct: 447 AKRNAAENMLEILG 460



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         + PEYK+    GP H   FTV + +      +    S +
Sbjct: 73  MAHPKEKTPMCLVNELARFNKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIK 131

Query: 210 AAEQVAAAEVLK 221
            A+  AAA+ L+
Sbjct: 132 KAQHTAAAKALE 143


>gi|297460681|ref|XP_591710.4| PREDICTED: staufen, RNA binding protein, homolog 1 (Drosophila)
           [Bos taurus]
 gi|297482107|ref|XP_002692543.1| PREDICTED: staufen, RNA binding protein, homolog 1 (Drosophila)
           [Bos taurus]
 gi|296480970|gb|DAA23085.1| staufen, RNA binding protein, homolog 1 [Bos taurus]
          Length = 601

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 234 SGPPHMKSFVTRVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 276



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +  + L +   AK    PEY +    G      F + V++     A+G   +K+ 
Sbjct: 305 CGQGMNPISRLAQIQQAKKEKEPEYLLLAERGLPRRREFVMQVKVGNHT-AEGSGTNKKV 363

Query: 211 AEQVAAAEVLKREG 224
           A++ AA  +L+  G
Sbjct: 364 AKRNAAENMLEILG 377



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         + PEYK+    GP H   FTV + +      +    S +
Sbjct: 1   MAHPKEKTLVCLVNELARFNKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIK 59

Query: 210 AAEQVAAAEVLK 221
            A+  AAA+ L+
Sbjct: 60  KAQHTAAAKALE 71


>gi|325530262|sp|D2GVP7|STAU1_AILME RecName: Full=Double-stranded RNA-binding protein Staufen homolog 1
 gi|281351107|gb|EFB26691.1| hypothetical protein PANDA_000813 [Ailuropoda melanoleuca]
          Length = 580

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 215 SGPPHMKSFVTRVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 257



 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +  + L +   AK    PEY +    G      F + V++     A+G   +K+ 
Sbjct: 288 CSQGMNPISRLAQIQQAKKEKEPEYLLLTERGLPRRREFVMQVKVGNHT-AEGTGTNKKV 346

Query: 211 AEQVAAAEVLKREG 224
           A++ AA  +L+  G
Sbjct: 347 AKRNAAENMLEILG 360


>gi|151553859|gb|AAI49062.1| STAU1 protein [Bos taurus]
          Length = 531

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 162 SGPPHMKSFVTRVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 204



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +  + L +   AK    PEY +    G      F + V++     A+G   +K+ 
Sbjct: 235 CGQGMNPISRLAQIQQAKKEKEPEYLLLAERGLPRRREFVMQVKVGNHT-AEGSGTNKKV 293

Query: 211 AEQVAAAEVLKREG 224
           A++ AA  +L+  G
Sbjct: 294 AKRNAAENMLEILG 307


>gi|208690889|gb|ACI31220.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Cercocebus torquatus atys]
          Length = 554

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V  E   +   GP+    F    +I       G   SK+ A+Q+AA   L
Sbjct: 116 VNYEQCTSGVHGPEG---FHYKCKIGDKEYGIGTGSSKQEAKQLAAKLAL 162


>gi|208690887|gb|ACI31219.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Macaca
           mulatta]
          Length = 554

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V  E   +   GP+    F    +I       G   SK+ A+Q+AA   L
Sbjct: 116 VNYEQCTSGVHGPEG---FHYKCKIGDKEYGIGTGSSKQEAKQLAAKLAL 162


>gi|134105965|gb|ABO60959.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Macaca
           mulatta]
          Length = 554

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V  E   +   GP+    F    +I       G   SK+ A+Q+AA   L
Sbjct: 116 VNYEQCTSGVHGPEG---FHYKCKIGDKEYGIGTGSSKQEAKQLAAKLAL 162


>gi|145301625|ref|NP_001077417.1| interferon-induced, double-stranded RNA-activated protein kinase
           [Macaca mulatta]
 gi|134105963|gb|ABO60958.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Macaca
           mulatta]
          Length = 554

 Score = 57.2 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V  E   +   GP+    F    +I       G   SK+ A+Q+AA   L
Sbjct: 116 VNYEQCTSGVHGPEG---FHYKCKIGDKEYGIGTGSSKQEAKQLAAKLAL 162


>gi|149733337|ref|XP_001503607.1| PREDICTED: staufen, RNA binding protein, homolog 1 (Drosophila)
           [Equus caballus]
          Length = 577

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 208 SGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 250



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++     A+G   +K+ A++ 
Sbjct: 285 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGAGTNKKVAKRN 343

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 344 AAENMLEILG 353


>gi|73992221|ref|XP_867056.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen
           homolog isoform 2 [Canis familiaris]
          Length = 697

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 328 SGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 370



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +  + L +   AK    PEY +    G      F + V++     A+G   +K+ 
Sbjct: 401 CGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGAGTNKKV 459

Query: 211 AEQVAAAEVLKREG 224
           A++ AA  +L+  G
Sbjct: 460 AKRNAAENMLEILG 473



 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 2/67 (2%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +           A  G     K    S   H   FTV + +      +    S + A+  
Sbjct: 104 QGPAHCKVNIISAWCGSDFLLKEEAVSEYPH-QVFTVQLTLGDQHW-EAEGTSIKKAQHT 161

Query: 215 AAAEVLK 221
           AAA+ L+
Sbjct: 162 AAAKALE 168


>gi|73992229|ref|XP_867100.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen
           homolog isoform 5 [Canis familiaris]
          Length = 600

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 231 SGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 273



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +  + L +   AK    PEY +    G      F + V++     A+G   +K+ 
Sbjct: 304 CGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGAGTNKKV 362

Query: 211 AEQVAAAEVLKREG 224
           A++ AA  +L+  G
Sbjct: 363 AKRNAAENMLEILG 376



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         + PEYK+    GP H   FTV + +      +    S +
Sbjct: 1   MAHPKEKTPMCLVNELARFNKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIK 59

Query: 210 AAEQVAAAEVLK 221
            A+  AAA+ L+
Sbjct: 60  KAQHTAAAKALE 71


>gi|73992227|ref|XP_534450.2| PREDICTED: similar to Double-stranded RNA-binding protein Staufen
           homolog isoform 1 [Canis familiaris]
          Length = 684

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 315 SGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 357



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +  + L +   AK    PEY +    G      F + V++     A+G   +K+ 
Sbjct: 388 CGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGAGTNKKV 446

Query: 211 AEQVAAAEVLKREG 224
           A++ AA  +L+  G
Sbjct: 447 AKRNAAENMLEILG 460



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         + PEYK+    GP H   FTV + +      +    S +
Sbjct: 73  MAHPKEKTPMCLVNELARFNKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIK 131

Query: 210 AAEQVAAAEVLK 221
            A+  AAA+ L+
Sbjct: 132 KAQHTAAAKALE 143


>gi|73992225|ref|XP_867078.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen
           homolog isoform 4 [Canis familiaris]
          Length = 577

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 233 SGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 275



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +  + L +   AK    PEY +    G      F + V++     A+G   +K+ 
Sbjct: 304 CGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGAGTNKKV 362

Query: 211 AEQVAAAEVLKREG 224
           A++ AA  +L+  G
Sbjct: 363 AKRNAAENMLEILG 376



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         + PEYK+    GP H   FTV + +      +    S +
Sbjct: 1   MAHPKEKTPMCLVNELARFNKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIK 59

Query: 210 AAEQVAAAEVLK 221
            A+  AAA+ L+
Sbjct: 60  KAQHTAAAKALE 71


>gi|73992231|ref|XP_867111.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen
           homolog isoform 6 [Canis familiaris]
          Length = 703

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 334 SGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 376



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +  + L +   AK    PEY +    G      F + V++     A+G   +K+ 
Sbjct: 407 CGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGAGTNKKV 465

Query: 211 AEQVAAAEVLKREG 224
           A++ AA  +L+  G
Sbjct: 466 AKRNAAENMLEILG 479



 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 2/67 (2%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +           A  G     K    S   H   FTV + +      +    S + A+  
Sbjct: 104 QGPAHCKVNIISAWCGSDFLLKEEAVSEYPH-QVFTVQLTLGDQHW-EAEGTSIKKAQHT 161

Query: 215 AAAEVLK 221
           AAA+ L+
Sbjct: 162 AAAKALE 168


>gi|73992233|ref|XP_867122.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen
           homolog isoform 7 [Canis familiaris]
          Length = 600

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 233 SGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 275



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +  + L +   AK    PEY +    G      F + V++     A+G   +K+ 
Sbjct: 304 CGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGNHT-AEGAGTNKKV 362

Query: 211 AEQVAAAEVLKREG 224
           A++ AA  +L+  G
Sbjct: 363 AKRNAAENMLEILG 376



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         + PEYK+    GP H   FTV + +      +    S +
Sbjct: 1   MAHPKEKTPMCLVNELARFNKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIK 59

Query: 210 AAEQVAAAEVLK 221
            A+  AAA+ L+
Sbjct: 60  KAQHTAAAKALE 71


>gi|148235090|ref|NP_001085239.1| staufen, RNA binding protein, homolog 1 [Xenopus laevis]
 gi|56698874|gb|AAW23135.1| Staufen 1 [Xenopus laevis]
          Length = 718

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            ++  ++VT  +GP H   F   V + G    +G   SK+ +++ AA  VL+  
Sbjct: 315 NMSVNFEVTKETGPPHMKSFLTKVIV-GEFLGEGEGKSKKISKKNAAIAVLEEL 367



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK G  PEY +    G      F + V++   A A+G   +K+ A++ 
Sbjct: 403 MNPISRLAQIQQAKKGKEPEYILITERGLPRRREFVMQVKVGNHA-AEGSGTNKKVAKRN 461

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 462 AAENMLEILG 471


>gi|33469621|gb|AAQ19853.1| staufen [Xenopus laevis]
          Length = 712

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            ++  ++VT  +GP H   F   V + G    +G   SK+ +++ AA  VL+  
Sbjct: 309 NMSVNFEVTKETGPPHMKSFLTKVIV-GEFLGEGEGKSKKISKKNAAIAVLEEL 361



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK G  PEY +    G      F + V++   A A+G   +K+ A++ 
Sbjct: 397 MNPISRLAQIQQAKKGKEPEYILITERGLPRRREFVMQVKVGNHA-AEGSGTNKKVAKRN 455

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 456 AAENMLEILG 465


>gi|49256219|gb|AAH74253.1| Stau1 protein [Xenopus laevis]
 gi|83405197|gb|AAI10922.1| Stau1 protein [Xenopus laevis]
          Length = 708

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            ++  ++VT  +GP H   F   V + G    +G   SK+ +++ AA  VL+  
Sbjct: 305 NMSVNFEVTKETGPPHMKSFLTKVIV-GEFLGEGEGKSKKISKKNAAIAVLEEL 357



 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK G  PEY +    G      F + V++   A A+G   +K+ A++ 
Sbjct: 393 MNPISRLAQIQQAKKGKEPEYILITERGLPRRREFVMQVKVGNHA-AEGSGTNKKVAKRN 451

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 452 AAENMLEILG 461


>gi|326935945|ref|XP_003214024.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           [Meleagris gallopavo]
          Length = 852

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                    E+ +  +SGP H+PRF     I+G         SK+ A+Q AAA  +K  
Sbjct: 149 YSQFTYQHCEFTMLEQSGPSHEPRFKFQALINGRPFPPAEAGSKKLAKQEAAANAMKIL 207



 Score = 51.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 31/68 (45%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
                +      K G T E+ +  + GP HDPRF+  V++        +  SK+ A+Q+A
Sbjct: 255 KHPISVLMEYGQKSGNTIEFLLLSQDGPSHDPRFSYCVKMGDQIFPAVVGNSKKGAKQMA 314

Query: 216 AAEVLKRE 223
           A   +K  
Sbjct: 315 AEVAVKIL 322



 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             ++GP HDP+F    ++ G         SK+  +Q AA   L+  
Sbjct: 394 IDQTGPPHDPKFVYQAKVGGRWFPAVTAHSKKQGKQEAADAALRVL 439


>gi|170101705|ref|XP_001882069.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164642884|gb|EDR07138.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 76

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +          RSGP H   + ++V I  +   +G   +++ A++ AA   LKR 
Sbjct: 13  QHYRKEMPIYEEKRSGPAHAEVWNIIVTIKEIEYGRGEGSNRKRAKEAAAEVALKRL 69


>gi|158298694|ref|XP_318876.4| AGAP009781-PA [Anopheles gambiae str. PEST]
 gi|157014008|gb|EAA14308.5| AGAP009781-PA [Anopheles gambiae str. PEST]
          Length = 341

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++   ++       +   V+ +         +   +    LQE   A+    P Y+    
Sbjct: 92  AVYMNVHKPDTQFHSCRVVNVHTNNNVNGEEEPTGNPIGWLQEMCMARRLPPPTYETETE 151

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            G  H+ +FT+   +       G   SK+ A++ AA  + +R 
Sbjct: 152 EGLPHERQFTIACVVLNYRE-VGEGKSKKIAKRQAAQRMWQRL 193



 Score = 39.5 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 2/76 (2%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA--QGMDCSKRAA 211
              +   ++  A        E           + +F  +V++S +  A   G   S + A
Sbjct: 264 CDRSIDFIRLLADIAKEQRFEVTYVDIEEKAGNGKFQCLVQLSTMPVAVCHGSGNSIQEA 323

Query: 212 EQVAAAEVLKREGIWT 227
           +  AA   L+   I T
Sbjct: 324 QSYAARNSLEYLKIMT 339


>gi|149751348|ref|XP_001497601.1| PREDICTED: adenosine deaminase, RNA-specific [Equus caballus]
          Length = 1145

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            T E+ +  +SGP H+PRF   V ISG         SK+ A+Q AA + 
Sbjct: 462 QTCEFNLIEQSGPPHEPRFKFQVVISGREFPPAEAGSKKVAKQDAAMKA 510



 Score = 55.3 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              K G + E+++  R GP HDP+F   V +           SK+ A+Q+AA E +K  
Sbjct: 567 CVHKLGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKVAKQMAAEEAMKAL 625



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 692 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 737


>gi|71017953|ref|XP_759207.1| hypothetical protein UM03060.1 [Ustilago maydis 521]
 gi|46098828|gb|EAK84061.1| hypothetical protein UM03060.1 [Ustilago maydis 521]
          Length = 469

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 83/295 (28%), Gaps = 77/295 (26%)

Query: 6   YSTLEKRIGYAF---------ANRSLLEKALTHSSIS----------------------- 33
           ++ L  R+G                L+ +A TH S                         
Sbjct: 126 FAALTARLGLIPSSVDSETRDRRIRLVHQACTHPSFQTLVDQANASANLQLEPGAAVSGL 185

Query: 34  ------------------HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
                                 E +  L  +G+ +LG+L +  L   + +     L    
Sbjct: 186 TKKQGADELDAVQFLALPSEGVEHHAALATVGNSLLGMLATEHLHLRYPNLPTRVLKAAV 245

Query: 76  NSLVSAETCSQVARELD---------------LASFIRVSSDLRKDVCSFMTSIQA---- 116
           ++ V   T S V  EL                  S    +   R        S       
Sbjct: 246 SAYVGPSTLSDVGSELGLAAQNILRWNKQARAPGSGFTQNRGGRGAAPRSTNSATRTLLS 305

Query: 117 -----DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKF 169
                D + +++A ++ + G+  A  FV  ++  R           D K  L        
Sbjct: 306 RDVAADAMRAIVAVIFQEQGLSAARNFVTSHFLSRGFNLSALLKFNDPKHALSSTCAKYG 365

Query: 170 GVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              P+ ++   SG     P F V V        +G   S R AE  AA + L+R 
Sbjct: 366 KSPPQSRMIAESGRLSISPVFVVGVWSGETKIGEGSGSSIRMAEFRAAEDALRRL 420


>gi|209154768|gb|ACI33616.1| Interleukin enhancer-binding factor 3 homolog [Salmo salar]
          Length = 683

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
              +         +     +YK+  ++GP H P FT+ VE+ G +  +    SKR A+  
Sbjct: 399 EPPQAMNALMRLNQLKPGLQYKLLSQTGPVHVPVFTMAVEVDGKSF-EASGPSKRTAKLH 457

Query: 215 AAAEVLKREGIWT 227
            A +VL+  G+ T
Sbjct: 458 VAVKVLQDMGLPT 470



 Score = 36.1 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VEI      QG   +
Sbjct: 550 ISETGGSHDKRFVMEVEIDEQKF-QGTGSN 578


>gi|213511536|ref|NP_001135193.1| interleukin enhancer-binding factor 3 homolog [Salmo salar]
 gi|209152728|gb|ACI33127.1| Interleukin enhancer-binding factor 3 homolog [Salmo salar]
          Length = 843

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
              +         +     +YK+  ++GP H P FT+ VE+ G +  +    SKR A+  
Sbjct: 399 EPPQAMNALMRLNQLKPGLQYKLLSQTGPVHVPVFTMAVEVDGKSF-EASGPSKRTAKLH 457

Query: 215 AAAEVLKREGIWT 227
            A +VL+  G+ T
Sbjct: 458 VAVKVLQDMGLPT 470



 Score = 36.1 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VEI      QG   +
Sbjct: 550 ISETGGSHDKRFVMEVEIDEQKF-QGTGSN 578


>gi|308489344|ref|XP_003106865.1| hypothetical protein CRE_17085 [Caenorhabditis remanei]
 gi|308252753|gb|EFO96705.1| hypothetical protein CRE_17085 [Caenorhabditis remanei]
          Length = 725

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 5/103 (4%)

Query: 130 GGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
                 G    +             K ++ +             +   Y +   SGP H 
Sbjct: 36  HPHHWCGQHKFEADSPTNFYDYTTAKNKQKSAMCRVAEIARFNKLRHIYDLQDESGPAHK 95

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK--REGIWT 227
             FTV + ++     +G   S + A+Q +A   LK  +  + T
Sbjct: 96  KLFTVKLVLTPEESFEGSGPSIKRAQQASAEAALKGTKLPLPT 138



 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  + +  + L +   +K    P +++    G      F + V+       +G   
Sbjct: 396 MDPLYGHQINPVSRLIQVIQSKNQEHPTFELVAEHGASKYKEFVIRVKCGDEMR-EGRGP 454

Query: 207 SKRAAEQVAAAEVLKREG 224
           +KR A++ AA  +L+  G
Sbjct: 455 NKRLAKRAAAEAMLETIG 472



 Score = 43.8 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 178 TFRSGPDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP HD ++ V            A   G    K+ A+Q A A+++K  
Sbjct: 305 LKEEGPPHDRQYVVRCAFVTSAQVVKAEGIGRGKKKKIAQQEACAQLIKTI 355



 Score = 41.8 bits (96), Expect = 0.076,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 25/99 (25%)

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            L          T              K        +     + +           + P 
Sbjct: 155 VLQNVCRTLHYPTPDYIVCNPPVYPDPKHLVPEHILIPPTTLSMYHPQSPVAPIDSTRPQ 214

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 V+V I G   A G+  +   A+Q AAA+ L   
Sbjct: 215 GPKLQAVMVHIDGKPVATGVGETYPLAKQDAAAKALIAL 253


>gi|320333355|ref|YP_004170066.1| double-stranded RNA-binding domain-containing protein [Deinococcus
           maricopensis DSM 21211]
 gi|319754644|gb|ADV66401.1| double-stranded RNA binding domain protein [Deinococcus
           maricopensis DSM 21211]
          Length = 148

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            +    + GP HDP F   + +     A G   +KR AE+VA+   L
Sbjct: 19  PHFDVQQDGPAHDPHFRADIRVGSQILASGEGRTKRDAERVASEAAL 65


>gi|226374647|gb|ACO52475.1| RNA transcript variant b adenosine deaminase [Loligo opalescens]
          Length = 687

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +++  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 82  FQLMGQTGPVHAPTFNMKVEVNGEVF-EGAGPTKKKAKLQAAEKALR 127


>gi|226374645|gb|ACO52474.1| RNA transcript variant a adenosine deaminase [Loligo opalescens]
          Length = 786

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +++  ++GP H P F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 181 FQLMGQTGPVHAPTFNMKVEVNGEVF-EGAGPTKKKAKLQAAEKALR 226



 Score = 34.9 bits (78), Expect = 9.8,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              SGP HD  F + V+I+     QG   S
Sbjct: 60  VSESGPPHDRNFVMSVKINDDNV-QGAGRS 88


>gi|213511414|ref|NP_001133664.1| double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar]
 gi|209154860|gb|ACI33662.1| Double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar]
          Length = 701

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +   ++V   +GP H   F V V + G    +G   SK+ A+++AA  VL+  
Sbjct: 290 NMPVNFEVLKEAGPPHMKSFMVRVAV-GEFCGEGEGKSKKIAKKLAATAVLEEL 342



 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V + G   A+G+  SK+ A++ 
Sbjct: 380 MNPISRLAQIQQAKKEKEPEYNMLTERGLPRRREFVMQVMVCGQC-AEGLGPSKKVAKKN 438

Query: 215 AAAEVLKREG 224
           AA ++L+  G
Sbjct: 439 AAEKMLELLG 448



 Score = 44.1 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/146 (9%), Positives = 35/146 (23%), Gaps = 2/146 (1%)

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           V      Q       +      S     +        +    +      +   +E+    
Sbjct: 108 VRLSLGDQHWEAEGTSIKKAQHSAAATALAQTTMPKPSMRNNTRNNTDCMTQTVELNSLC 167

Query: 139 VDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
           +    K        +      +                +  +   P     + + + I G
Sbjct: 168 MKLGMKPMYKPIDPYPGMRPPSFNYNIRAPGPYQRSMQQYYYPFPPVGPVLYHMELNIGG 227

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKRE 223
                G   +++ A+  AA++ LK  
Sbjct: 228 QQF-HGKGRTRQLAKHDAASKALKTL 252



 Score = 38.4 bits (87), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 1/65 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                +      L         + PEYK+    GP H   F+V + +      +    S 
Sbjct: 66  NMANPKEKTPMCLVNELARFNKIQPEYKLLCEQGPAHSKIFSVRLSLGDQHW-EAEGTSI 124

Query: 209 RAAEQ 213
           + A+ 
Sbjct: 125 KKAQH 129


>gi|304307737|ref|NP_001182008.1| loquacious [Bombyx mori]
 gi|300669735|dbj|BAJ11656.1| loquacious [Bombyx mori]
          Length = 382

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               G  H+P F   V ++ L  A G   SK+ A+  AA  +L + 
Sbjct: 94  LQIEGMIHEPTFRYRVTVADL-FAMGTGRSKKEAKHSAAKALLDKL 138



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + R          H     T    +       H+ +FT++  +       G   SK+ A+
Sbjct: 173 WLRSCVCHDSGHHHLTMLKTMTMLIDQFQVCPHERQFTIICTLL-KRREVGTGKSKKLAK 231

Query: 213 QVAAAEVLKRE 223
           + AA ++ +  
Sbjct: 232 RQAAYKMWQAL 242


>gi|321445499|gb|EFX60714.1| hypothetical protein DAPPUDRAFT_123225 [Daphnia pulex]
          Length = 145

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64
              +EK IGY F N+ LL +A+THSS  ++   ESY   E++GDR+LG  ++  +  +  
Sbjct: 26  LEEVEKTIGYIFKNKLLLIQAMTHSSYKNNCLTESYNEQEWIGDRVLGFEMAKFVSLNCQ 85

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
                  S  F +L S E  + +     +   I++  + 
Sbjct: 86  D-TVDAKSATFATLTSNEFWAVLTVRHGIHKHIKLCDNN 123


>gi|70995776|ref|XP_752643.1| 60S ribosomal protein L3 [Aspergillus fumigatus Af293]
 gi|66850278|gb|EAL90605.1| 60S ribosomal protein L3 [Aspergillus fumigatus Af293]
 gi|159131396|gb|EDP56509.1| 60S ribosomal protein L3 [Aspergillus fumigatus A1163]
          Length = 363

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 77/248 (31%), Gaps = 29/248 (11%)

Query: 2   SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
            + + + L  R+ Y  +   L  L +AL  +S   +   + E L  LG  +L    S  L
Sbjct: 81  ESAKLAALHARL-YLPSRLPLETLARALVDASADPNPDFNNESLATLGHDLLTNYTSEHL 139

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS------------------ 101
              +       +     + V  +T S +ARE  +      S                   
Sbjct: 140 ICTYPRLPLTVIFAAMYAYVGPKTLSAMAREWGVEMASITSRVVYDNEFGDPVKEVADSA 199

Query: 102 -----DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FR 154
                +             A  V +++ A+YL  G   A  F +++   R L   +    
Sbjct: 200 AQAVSETHGAQGVTAEQASATFVRAVMGAIYLHAGRPAAKRFFEQHILSRHLNISELFNF 259

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
                +L      +    P  K+   +G     P F V +        +G   S   A  
Sbjct: 260 SQPARDLTRLCARENFERPVAKIISETGRKSRHPVFVVGIYSGQDKLGEGAGASLMEARS 319

Query: 214 VAAAEVLK 221
            AA   LK
Sbjct: 320 RAAVAALK 327


>gi|9633665|ref|NP_051743.1| m29L [Myxoma virus]
 gi|6523884|gb|AAF14917.1|AF170726_33 m29L [Myxoma virus]
 gi|170664495|gb|ACB28652.1| m29L [Myxoma virus]
 gi|170664667|gb|ACB28823.1| m29L [recombinant virus 6918VP60-T2]
 gi|301134555|gb|ADK63669.1| m29L [Myxoma virus]
          Length = 115

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            +          + +           R+G  H P FT VV +SG +       +K+ A +
Sbjct: 38  WQTKNPCTVLNEYCQITFREWSINVTRAGQSHSPTFTAVVTVSGYSFKSATGSNKKEARK 97

Query: 214 VAAAEV 219
            AA E 
Sbjct: 98  NAAKEA 103


>gi|141795447|gb|AAI34870.1| Sb:cb627 protein [Danio rerio]
          Length = 658

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           +         +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A 
Sbjct: 402 QPMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTVY-EASGSSKKTAKLHVAV 460

Query: 218 EVLKREGIWT 227
           +VL+  G  T
Sbjct: 461 KVLQAMGYPT 470



 Score = 34.9 bits (78), Expect = 7.9,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              SG  HD RF + VE+ G    +G   +
Sbjct: 543 ISESGGSHDKRFVMEVEVDGQKF-RGAGPN 571


>gi|326671063|ref|XP_707047.3| PREDICTED: spermatid perinuclear RNA-binding protein isoform 2
           [Danio rerio]
          Length = 690

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           +         +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A 
Sbjct: 402 QPMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTVY-EASGSSKKTAKLHVAV 460

Query: 218 EVLKREGIWT 227
           +VL+  G  T
Sbjct: 461 KVLQAMGYPT 470



 Score = 34.9 bits (78), Expect = 7.9,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              SG  HD RF + VE+ G    +G   +
Sbjct: 543 ISESGGSHDKRFVMEVEVDGQKF-RGAGPN 571


>gi|7798620|gb|AAF69764.1| double-stranded RNA adenosine deaminase DRADA [Takifugu rubripes]
          Length = 1194

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +        G   E+ +T ++GP HD RF   V++     ++    SK+AA Q+AA E +
Sbjct: 585 VLMEYGQHSGNPIEFIMTGQAGPPHDTRFMYRVKVGENLFSEASAPSKKAARQLAAEEAV 644

Query: 221 KRE 223
           K  
Sbjct: 645 KEL 647



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+FT   ++ G         +K+  +Q AA   L+  
Sbjct: 727 VGQSGPPHEPKFTYQAKLGGRWFPAVCASNKKQGKQEAADAALRVL 772



 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                  G   E+ +  +SGP HDPRF + V ++G         S
Sbjct: 477 MEYAQFLGQNCEFLLLDQSGPSHDPRFRMQVMLNGRQFPVAEASS 521


>gi|18640118|ref|NP_570192.1| SPV032 putative PKR inhibitor host range protein [Swinepox virus]
 gi|18448525|gb|AAL69771.1| SPV032 putative PKR inhibitor host range protein [Swinepox virus]
          Length = 177

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 29/92 (31%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
            ++            +            ++         + +            SG  H 
Sbjct: 73  NMNNESIEIHNPDHMFSDTIPYTKIIEWKNKNPITVLNEYCQITQRDWIIDIISSGQSHC 132

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           P FT  + +SG+    G   +K+ A+Q+AA E
Sbjct: 133 PIFTASITVSGIKCKTGKGSTKKEAKQIAARE 164


>gi|126659516|ref|ZP_01730648.1| ribonuclease III (rnc) [Cyanothece sp. CCY0110]
 gi|126619155|gb|EAZ89892.1| ribonuclease III (rnc) [Cyanothece sp. CCY0110]
          Length = 328

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 5/143 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFN 61
             S ++++I + F N  LL  +L+  S     +      ERLE LG+ +L L+I   L++
Sbjct: 4   NSSLVQEKISFNFKNPELLFLSLSDPSYGKQINQPGSDNERLESLGETVLDLIIIDYLYH 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFMTSI-QADVV 119
           HF      +++   + L   E  + +   L L   +  +  +  +      +S      +
Sbjct: 64  HFPYLTISKMTALRDKLSEKERLTNLWFGLGLGESYPFLDVNEERHRLRVKSSNPFEKSL 123

Query: 120 ESLIAALYLDGGIEVAGTFVDKY 142
           ++L+ A+++D G   +  +V+K 
Sbjct: 124 KALVGAIHIDRGFSQSYNWVNKQ 146


>gi|326507276|dbj|BAJ95715.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
               T RSGP H P FT  VE++G         +K+ A++ AA      LK+ 
Sbjct: 104 PMYTTIRSGPGHTPTFTCTVELAGRIFTGSPGKTKKQAQKNAAMAAWSELKQL 156



 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
                     R GPDH PRF   V  +G +    G   + R AE  AA   L   
Sbjct: 14  CFNLPSYACIREGPDHAPRFKATVTFNGESFESPGFYSTLRQAEHAAAEVALNEL 68


>gi|148681491|gb|EDL13438.1| mCG2026 [Mus musculus]
          Length = 221

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              PEY VT  SGP H   FT+   +       G   SK+ A++ AA ++L
Sbjct: 28  WRLPEYMVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNAAVKML 77


>gi|307182700|gb|EFN69824.1| Interferon-inducible double stranded RNA-dependent protein kinase
           activator A-like protein [Camponotus floridanus]
          Length = 364

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           YKV    GPDH   FT+ V I G    +G    K+ A+Q AA  +L+  
Sbjct: 133 YKVVDERGPDHMKMFTIEVSI-GSICEKGSASCKKIAKQEAAKNLLQHL 180



 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RF   V+      A+G   SK+ A+  AA ++L   
Sbjct: 35  RFVCRVDCKEFN-AEGEGNSKKDAKHNAAEKMLSLL 69


>gi|92097815|gb|AAI15333.1| Sb:cb627 protein [Danio rerio]
          Length = 658

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           +         +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A 
Sbjct: 402 QPMNALMRLNRIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTVY-EASGSSKKTAKLHVAV 460

Query: 218 EVLKREGIWT 227
           +VL+  G  T
Sbjct: 461 KVLQAMGYPT 470



 Score = 34.9 bits (78), Expect = 7.9,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              SG  HD RF + VE+ G    +G   +
Sbjct: 543 ISESGGSHDKRFVMEVEVDGQKF-RGAGPN 571


>gi|297692032|ref|XP_002823375.1| PREDICTED: RISC-loading complex subunit TARBP2-like [Pongo abelii]
          Length = 369

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
               +E    K    PEY VT  SGP H   FT+   +       G   SK+ A++ AAA
Sbjct: 164 CLPSKELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-HFIEIGSGTSKKLAKRNAAA 222

Query: 218 EVL 220
           ++L
Sbjct: 223 KML 225


>gi|291409985|ref|XP_002721271.1| PREDICTED: staufen [Oryctolagus cuniculus]
          Length = 862

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGP H   F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 499 SGPPHMRNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 541



 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++     A+G   +K+ A++ 
Sbjct: 574 MNPISRLAQIQQAKKEREPEYLLLTERGLPRRREFVMQVKVGNHT-AEGTGTNKKVAKRN 632

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 633 AAENMLEILG 642


>gi|7770277|gb|AAF69674.1| double-stranded RNA-specific editase [Tetraodon fluviatilis]
          Length = 1255

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +        G   E+ +T ++GP HD RF   V++     ++    SK+AA Q+AA E +
Sbjct: 633 VLMDYSQHSGNAIEFIMTGQAGPPHDTRFMYRVKVGENLFSEASAPSKKAARQLAAEEAV 692

Query: 221 KRE 223
           K  
Sbjct: 693 KEL 695



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+FT   ++ G         +K+  +Q AA   L+  
Sbjct: 775 VGQSGPPHEPKFTYQAKLGGRWFPPVCASNKKQGKQEAADAALRVL 820



 Score = 38.0 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                  G   E+ +  +SGP HDPRF + V ++G         S
Sbjct: 504 MEYAQFLGQNCEFLLLDQSGPSHDPRFRMQVMLNGRLFPVAEASS 548


>gi|149022335|gb|EDL79229.1| protein kinase, interferon inducible double stranded RNA dependent
           activator, isoform CRA_a [Rattus norvegicus]
          Length = 230

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 1/109 (0%)

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
           +   ++ S+   +  +  + +    V         K  K + +    LQE A       P
Sbjct: 1   MHYHLLSSVEEVILFNNTLIMFSFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLP 60

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           EY ++   GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 61  EYTLSQEGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 108


>gi|47225372|emb|CAG11855.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1598

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +        G   E+ +T ++GP HD RF   V++     ++    SK+AA Q+AA E +
Sbjct: 447 VLMEYSQHSGNAIEFIMTGQAGPPHDTRFMYRVKVGENLFSEASAPSKKAARQLAAEEAV 506

Query: 221 KRE 223
           K  
Sbjct: 507 KEL 509



 Score = 38.0 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                  G   E+ +  +SGP HDPRF + V ++G         S
Sbjct: 317 MEYAQFLGQNCEFLLLDQSGPSHDPRFRMQVMLNGRLFPVAEASS 361


>gi|301774246|ref|XP_002922574.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
           adenosine deaminase-like [Ailuropoda melanoleuca]
          Length = 1144

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 1/103 (0%)

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + + +          +    +            +    ++  + L E+A      T E+ 
Sbjct: 411 NSIHAAPGEFRAIMEMPSFYSHGWPRCSPYKKLTECQLKNPISGLLEYAQ-FASQTCEFN 469

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +  + GP H+PRF   V I G         SK+ A+Q AA + 
Sbjct: 470 LLEQRGPPHEPRFKFQVIIGGREFPPAEAGSKKVAKQDAALKA 512



 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              K G + E+++  R GP HDP+F   V +           SK+ A+Q+AA E +K  
Sbjct: 569 CVHKLGSSCEFRLLSREGPAHDPKFQYCVAMGAHTFPTASAPSKKVAKQMAAEEAVKAL 627



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 694 VDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 739


>gi|149048040|gb|EDM00616.1| adenosine deaminase, RNA-specific, isoform CRA_a [Rattus
           norvegicus]
          Length = 634

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 37/95 (38%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           +  +E       +     +  +  F   +          K G + E+++  + GP HDP+
Sbjct: 21  NCPMEEDPEKPAESQPPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 80

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 81  FQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 115



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 178 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 223


>gi|332017864|gb|EGI58524.1| Protein SON [Acromyrmex echinatior]
          Length = 808

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQ 213
           +   + L E+   K    P Y++ F SGPDH   F   V+++G+     +  S K+ A+ 
Sbjct: 734 KHPVSLLGEYCTKKKLGAPVYELCFESGPDHRKNFLFKVKVNGIEYKPSVASSNKKQAKA 793

Query: 214 VAAAEVLKREGIW 226
            AA   L+  G+ 
Sbjct: 794 EAAQICLQNLGLL 806


>gi|297668947|ref|XP_002812678.1| PREDICTED: LOW QUALITY PROTEIN: interferon-inducible double
           stranded RNA-dependent protein kinase activator A-like
           [Pongo abelii]
          Length = 313

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 90  RAAEAAINILKANASICFAVPDPXMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 62  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100


>gi|201023367|ref|NP_001128425.1| R2D2 protein [Tribolium castaneum]
 gi|270009455|gb|EFA05903.1| hypothetical protein TcasGA2_TC008716 [Tribolium castaneum]
          Length = 320

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 5/120 (4%)

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
                  + +     +  L   G  + +   V ++  Q         +            
Sbjct: 56  GRSKQVAKHNAASKALEILAEQGLYDPSSNPVQEFNAQSHRNESDSPQKPPVNFIGNLKD 115

Query: 168 KFG----VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                    PE+K     GP H   FT    I+     Q    +K+ A+Q+AA E+L++ 
Sbjct: 116 MCCEFKLPYPEFKEISDVGPPHCREFTYECCIA-SITTQATANTKKQAKQLAAREMLEKI 174



 Score = 46.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            S +  +     LQE+   +    PEY +       H+  F   V ++      G   SK
Sbjct: 1   MSRQNTKTPAMVLQEFTMKRGFSPPEYILVMSKTGTHENEFHYKVNVAN-VCGLGFGRSK 59

Query: 209 RAAEQVAAAEVLKRE 223
           + A+  AA++ L+  
Sbjct: 60  QVAKHNAASKALEIL 74


>gi|33322517|gb|AAQ06986.1|AF496312_1 ribonuclease III [Lactobacillus delbrueckii subsp. lactis]
          Length = 41

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           V V + G   A G   +K+ AEQ AA+  L+   
Sbjct: 1   VEVLVDGKKXASGEGRNKKKAEQDAASHALEHLN 34


>gi|47220271|emb|CAG03305.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 570

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
           +     K   +  +        ++    EY++T ++GP H+P FT+VV+++G    +   
Sbjct: 371 QKRFQRKSFTEDFSMNAVMRLNQYKRGLEYRLTSQTGPVHEPVFTMVVDVNGKTY-EATG 429

Query: 206 CSKRAAEQVAAAEV---LKREGIWT 227
            SK+AA+   A +    L   G+ T
Sbjct: 430 PSKKAAKLNVATKARLVLLDLGLPT 454


>gi|111185526|gb|AAH60382.2| LOC398937 protein [Xenopus laevis]
          Length = 426

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            ++  ++VT  +GP H   F   V + G     G   SK+ +++ AA  VL+  
Sbjct: 282 NMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGNGEGKSKKISKKNAAIAVLEEL 334


>gi|68533781|gb|AAH99038.1| LOC398937 protein [Xenopus laevis]
          Length = 380

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            ++  ++VT  +GP H   F   V + G     G   SK+ +++ AA  VL+  
Sbjct: 305 NMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGNGEGKSKKISKKNAAIAVLEEL 357


>gi|307213091|gb|EFN88613.1| Double-stranded RNA-binding protein Staufen-like protein 2
           [Harpegnathos saltator]
          Length = 797

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
             +      L         V  +Y++T   GP H  RFTV +++           S + A
Sbjct: 188 NMKEKTPMCLLNELARFNRVQHQYRLTNEQGPAHKKRFTVTLKLGEEEY-IAEGPSIKKA 246

Query: 212 EQVAAAEVLKR 222
           +  AA E L +
Sbjct: 247 QHSAATEALTK 257



 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              SG  H   F     +       G   SK+ +++ AA  +L+   
Sbjct: 437 VSESGKPHIRTFMTKCTVGDKV-TVGEGSSKKVSKKRAAELMLEELK 482


>gi|58332604|ref|NP_001011376.1| double-stranded RNA-binding protein Staufen homolog 2 [Xenopus
           (Silurana) tropicalis]
 gi|73919461|sp|Q5M7M7|STAU2_XENTR RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2
 gi|56788853|gb|AAH88555.1| staufen, RNA binding protein, homolog 2 [Xenopus (Silurana)
           tropicalis]
          Length = 624

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 324 MNPISRLAQIQQAKKEKEPEYVLLSERGIQRRREFVMQVKV-GEETATGTGPNKKTAKRN 382

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 383 AAEAMLLQLG 392



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         + P+YK+    GP H   FTV + +      Q    S +
Sbjct: 1   MTNPKEKTPMCLVNELARFNRIQPQYKLLDERGPAHSKLFTVQLTLGEQTW-QAESTSIK 59

Query: 210 AAEQVAAAEVL 220
            A+  AA+  L
Sbjct: 60  KAQHAAASLAL 70


>gi|296817299|ref|XP_002848986.1| RNase3 domain-containing protein [Arthroderma otae CBS 113480]
 gi|238839439|gb|EEQ29101.1| RNase3 domain-containing protein [Arthroderma otae CBS 113480]
          Length = 378

 Score = 56.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 80/230 (34%), Gaps = 28/230 (12%)

Query: 17  FANRSLLEKALTHSSISHS-------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
             +  L     TH+ I           ++SY+RLE LGD  + L+ + L++ +F +   G
Sbjct: 115 IKDEGLKSAVFTHTGIVERGPGSSLCSEKSYDRLEVLGDAYIELISTRLIWENFPTLPAG 174

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +++    ++V  ET +Q A        ++ +SD R  V    T I+ DV E+ +AA  + 
Sbjct: 175 KMAQARETMVKNETLAQYATAYGFDELLKTTSDYR-SVPKRWTKIRGDVFEAYVAAAIIS 233

Query: 130 GGIEVAGTFVDKYWKQRALKSGK-----FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
              +          +    K             +   +     K   T   K       D
Sbjct: 234 DPKDGLRAVESWLTQLWLPKLADVKLPLPPAGPEHGNKISFKDKLAATVMSKGIRLQYID 293

Query: 185 HDP---------RFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220
             P          F + V ++G          G   SK  A   AA   L
Sbjct: 294 EKPPQREGGLVTSF-IGVYLTGWGYERKHLGSGSGLSKTEAGNEAALRAL 342


>gi|254693019|gb|ACT79359.1| RE17094p [Drosophila melanogaster]
          Length = 392

 Score = 56.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y     +  G  + KY   +     +     K  +      + G    YK+  ++GP H 
Sbjct: 25  YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 82

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 83  PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|240268596|gb|ACS52172.1| ADARe2 [Drosophila melanogaster]
 gi|260166757|gb|ACX32990.1| LD32961p [Drosophila melanogaster]
          Length = 392

 Score = 56.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y     +  G  + KY   +     +     K  +      + G    YK+  ++GP H 
Sbjct: 25  YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 82

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 83  PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|240268594|gb|ACS52171.1| ADARe1 [Drosophila melanogaster]
          Length = 355

 Score = 56.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y     +  G  + KY   +     +     K  +      + G    YK+  ++GP H 
Sbjct: 25  YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 82

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 83  PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|4164311|emb|CAA22774.1| EG:BACN35H14.1 [Drosophila melanogaster]
          Length = 653

 Score = 56.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y     +  G  + KY   +     +     K  +      + G    YK+  ++GP H 
Sbjct: 25  YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 82

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 83  PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|7546827|gb|AAF63703.1| double-stranded RNA-specific adenosine deaminase a [Drosophila
           melanogaster]
          Length = 632

 Score = 56.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y     +  G  + KY   +     +     K  +      + G    YK+  ++GP H 
Sbjct: 25  YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 82

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 83  PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|7546826|gb|AAF63702.1| alternative double-stranded RNA-specific adenosine deaminase b
           [Drosophila melanogaster]
          Length = 669

 Score = 56.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y     +  G  + KY   +     +     K  +      + G    YK+  ++GP H 
Sbjct: 25  YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 82

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 83  PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|85724778|ref|NP_001033821.1| adenosine deaminase acting on RNA, isoform C [Drosophila
           melanogaster]
 gi|84798392|gb|ABC67164.1| adenosine deaminase acting on RNA, isoform C [Drosophila
           melanogaster]
 gi|294712595|gb|ADF29633.1| SD06892p [Drosophila melanogaster]
          Length = 186

 Score = 56.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y     +  G  + KY   +     +     K  +      + G    YK+  ++GP H 
Sbjct: 25  YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 82

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 83  PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|45551201|ref|NP_726761.2| adenosine deaminase acting on RNA, isoform B [Drosophila
           melanogaster]
 gi|45446775|gb|AAN09057.2| adenosine deaminase acting on RNA, isoform B [Drosophila
           melanogaster]
          Length = 628

 Score = 56.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y     +  G  + KY   +     +     K  +      + G    YK+  ++GP H 
Sbjct: 21  YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 78

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 79  PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 112


>gi|24639162|ref|NP_569940.2| adenosine deaminase acting on RNA, isoform A [Drosophila
           melanogaster]
 gi|13448047|gb|AAK26850.1| pre-mRNA adenosine deaminase [Drosophila melanogaster]
 gi|22831515|gb|AAF45665.2| adenosine deaminase acting on RNA, isoform A [Drosophila
           melanogaster]
          Length = 632

 Score = 56.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y     +  G  + KY   +     +     K  +      + G    YK+  ++GP H 
Sbjct: 25  YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 82

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 83  PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|61218669|sp|Q9NII1|ADAR_DROME RecName: Full=Double-stranded RNA-specific editase Adar; AltName:
           Full=Adenosine deaminase that act on RNA; AltName:
           Full=Pre-mRNA adenosine deaminase; AltName:
           Full=RNA-editing deaminase 1; AltName: Full=RNA-editing
           enzyme 1; AltName: Full=dADAR; AltName: Full=dsRNA
           adenosine deaminase
          Length = 676

 Score = 56.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y     +  G  + KY   +     +     K  +      + G    YK+  ++GP H 
Sbjct: 32  YNRKLPQKRGYEMPKYSDPKKKMCKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 89

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 90  PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 123


>gi|327269765|ref|XP_003219663.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           2-like [Anolis carolinensis]
          Length = 721

 Score = 56.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    PEY +    G      F + V++ G     G+  +K+ A++ 
Sbjct: 419 MNPISRLAQIQQARREKEPEYLLLSEKGIPRRREFVMQVKV-GNYITTGIGPNKKIAKRN 477

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 478 AAEVMLLQLG 487



 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 52/177 (29%), Gaps = 10/177 (5%)

Query: 47  GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
           G  +     +         A        +N             +L +           + 
Sbjct: 219 GLAMKRGEPAIYRPLDQKPAPNYNFRGMYNQRYHCPVPKTFHVQLTVGDHEFFGEGRTRQ 278

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
                         + + AL +     +     +     +  + GK    ++  +     
Sbjct: 279 AARH---------NAAMKALQVLQNEPIPPKLPENTESNKEAEEGKDANKSEISIVFEIA 329

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            K  +   ++VT  SGP H   F   V + G   A+G   SK+ +++ AA  VL+  
Sbjct: 330 LKRNMPVSFEVTKESGPPHMKSFVTHVSV-GEFSAEGEGNSKKLSKKRAAIAVLQEL 385



 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         + P YK     GP H   FTV + +      +    S + A   AA 
Sbjct: 126 PMCLVNELARFSRLQPVYKFLNEQGPAHAKTFTVQLTLGDQTW-EAEGSSIKKAHHSAAR 184

Query: 218 EVL 220
             L
Sbjct: 185 RAL 187


>gi|194375538|dbj|BAG56714.1| unnamed protein product [Homo sapiens]
          Length = 288

 Score = 56.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 15  QYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPT 67



 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 142 ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 170


>gi|269101846|ref|ZP_06154543.1| ribonuclease III [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161744|gb|EEZ40240.1| ribonuclease III [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 178

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 3/163 (1%)

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           +  +I+  L++ F +  EG++S    +LV  +T +++ RE +L   + +     K     
Sbjct: 1   MSFVIADDLYHRFPNVDEGDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFR 60

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAK 168
             SI AD VE++I A+YLD  IE     V  +++ R         ++D KT LQE    +
Sbjct: 61  RDSILADCVEAIIGAIYLDSDIEKVRNIVLDWYQSRLETIQPGVNQKDPKTRLQECLQGR 120

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
               P Y VT   G  H+  FTV  E++GL  P  G   S+R 
Sbjct: 121 RLPLPAYTVTKVHGEAHNQEFTVQCEVTGLDKPVVGKGGSRRK 163


>gi|154319367|ref|XP_001559001.1| hypothetical protein BC1G_02635 [Botryotinia fuckeliana B05.10]
 gi|150857066|gb|EDN32258.1| hypothetical protein BC1G_02635 [Botryotinia fuckeliana B05.10]
          Length = 425

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 74/248 (29%), Gaps = 43/248 (17%)

Query: 19  NRSLLEKALTH--SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           + +L   + TH   +       SYERLE++GD  +  + + L+   F +   G+ S    
Sbjct: 148 DPTLELASFTHHGRTNGSVTDLSYERLEWVGDAYIYTISTLLISQTFPALLPGKCSQLRE 207

Query: 77  SLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE-- 133
            LV   T +  AR+       +     +             D+ E+ +AA+ L       
Sbjct: 208 RLVKNVTLADFARKYGFEKRAKLPEDTIHPMKEPEKIKAMGDIFEAYVAAIVLADPENGV 267

Query: 134 -----------------------------VAGTFVDKYWKQRALKSGKFRRDAKTELQEW 164
                                         +  +  +          K   + K +LQ  
Sbjct: 268 SRASEWLKSLWAMVLSKEIQQEERNEDKLDSPLWRLRGNVDHVQTKTKTVLNPKEKLQMA 327

Query: 165 AHAKFGVTPEYKVTFRSGPDHDP--RFTVVVEISG-----LAPAQGMDCSKRAAEQVAAA 217
            ++K        +       +     FTV V + G          G    K+ A   AA 
Sbjct: 328 LNSKVSKLTYKDIGTAKKDKNTKLAVFTVGVFLDGWGEVDKQIGFGSANGKKEAGFKAAE 387

Query: 218 EVL--KRE 223
             L  K+ 
Sbjct: 388 MALNNKKL 395


>gi|291391824|ref|XP_002712359.1| PREDICTED: protein kinase, interferon-inducible double stranded RNA
           dependent activator [Oryctolagus cuniculus]
          Length = 314

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 91  RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 150

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 151 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 192



 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 65  PTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 101


>gi|194222350|ref|XP_001497407.2| PREDICTED: similar to protein kinase, interferon-inducible double
           stranded RNA dependent activator [Equus caballus]
          Length = 364

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 141 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 200

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 201 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 242



 Score = 48.0 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 113 HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 151


>gi|17568157|ref|NP_508196.1| STAUfen (dsRNA binding protein) homolog family member (stau-1)
           [Caenorhabditis elegans]
 gi|1519663|gb|AAB07566.1| Hypothetical protein F55A4.5 [Caenorhabditis elegans]
          Length = 705

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 5/103 (4%)

Query: 130 GGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
                 G    +               +  +             +   Y +   SGP H 
Sbjct: 48  HPQHWCGQHKFEADSPTNFYDYTNAKEKEKSAMCRVAEIARFNKLRHVYNLQDESGPAHK 107

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK--REGIWT 227
             FTV + ++     +G   S + A+Q +A   LK  +  + T
Sbjct: 108 KLFTVKLVLTEAETFEGSGTSIKRAQQASAEAALKGTKLPLPT 150



 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           +            ++       + +  + L +   AK    P +++    G      F +
Sbjct: 389 MNREPKRKTIVKDKKMDPLYGHQINPVSRLIQVTQAKSKEHPTFELVAEHGVSKYKEFII 448

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            V+       +G   +KR A++ AA  +L+  G
Sbjct: 449 QVKYGDDVQ-EGKGPNKRLAKRAAAEAMLESIG 480



 Score = 43.8 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQ--GMDCS 207
            ++ +          +  V   ++V    GP HD ++ V         +  A+  G    
Sbjct: 288 HKQKSVISDIHEKAYQLKVNVVFEVLKEEGPPHDRQYVVRCAFVTSGNVVKAEAVGKGKK 347

Query: 208 KRAAEQVAAAEVL 220
           K++A+Q A  ++L
Sbjct: 348 KKSAQQEACTQLL 360



 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 26/96 (27%)

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            L                                  L   + A +           + P 
Sbjct: 167 VLQNVCRTLQYQMPNYISCNPPVYPDPGCPLPEHILLPLESMALYAPPFPTLPIDPARPQ 226

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                 V+V I+G + A G+  +   A+Q AAA+ L
Sbjct: 227 GPKLQAVIVNINGKSIATGIGETYPLAKQDAAAKAL 262


>gi|62901980|gb|AAY18941.1| DKFZp564I0123 [synthetic construct]
          Length = 337

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 114 RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 173

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 174 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 215



 Score = 48.0 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 86  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 124


>gi|50308581|ref|XP_454293.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643428|emb|CAG99380.1| KLLA0E07635p [Kluyveromyces lactis]
          Length = 315

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 62/227 (27%), Gaps = 26/227 (11%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK------------- 67
           SLL + LT  S S         L   G  +L L +++ L   +                 
Sbjct: 68  SLLSRCLTCRS-SGEVNYDNVSLNIFGKSLLTLAVTSELMKKYPRLPGVVLNAAVDAYIN 126

Query: 68  --------EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                              V      +    + L       + + +       +  A  V
Sbjct: 127 DHVLSNVGRSWGIEPETQSVVDRYAKKENVTITLGKLRYFQNSVDELHNFTENNAMAVAV 186

Query: 120 ESLIAALY---LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            S+ AA+Y    D              ++  +K          EL      +    P  K
Sbjct: 187 RSIFAAVYSVDKDFNQTHKFIADHILSRKLDVKDLFAFEQPTRELAALCRRQGLERPVSK 246

Query: 177 VTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +   +G     P F V V        +G   S + A+  AA + L +
Sbjct: 247 LLAENGRLSKSPLFIVGVFSGEEKLGEGYGSSLKEAKARAATDALLK 293


>gi|30584929|gb|AAP36730.1| Homo sapiens protein kinase, interferon-inducible double stranded
           RNA dependent activator [synthetic construct]
 gi|33303847|gb|AAQ02437.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator [synthetic construct]
 gi|60653869|gb|AAX29627.1| protein kinase interferon-inducible double stranded RNA dependent
           activator [synthetic construct]
          Length = 314

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 90  RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 62  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100


>gi|67078460|ref|NP_001019951.1| interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Rattus norvegicus]
 gi|81908679|sp|Q4V8C7|PRKRA_RAT RecName: Full=Interferon-inducible double stranded RNA-dependent
           protein kinase activator A; AltName: Full=Protein
           activator of the interferon-induced protein kinase;
           AltName: Full=Protein kinase, interferon-inducible
           double stranded RNA-dependent activator
 gi|66910624|gb|AAH97446.1| Protein kinase, interferon inducible double stranded RNA dependent
           activator [Rattus norvegicus]
          Length = 313

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 90  RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 62  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100


>gi|224146029|ref|XP_002325853.1| predicted protein [Populus trichocarpa]
 gi|222862728|gb|EEF00235.1| predicted protein [Populus trichocarpa]
          Length = 291

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 29/90 (32%)

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
               +      ++  +  +    +           A  + G       T +SG  H P F
Sbjct: 196 SCERMGPPHAIRFKCKFTINGQTYESREYFPTLSKAEKREGCGFPTYCTEKSGEAHAPTF 255

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
              VEI G++       +K+ AE  AA   
Sbjct: 256 ISTVEIDGVSFTGKEARTKKQAEMSAAKIA 285


>gi|301766900|ref|XP_002918870.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A-like [Ailuropoda melanoleuca]
          Length = 313

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 90  RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 62  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100


>gi|4505581|ref|NP_003681.1| interferon-inducible double stranded RNA-dependent protein kinase
           activator A isoform 1 [Homo sapiens]
 gi|109100224|ref|XP_001098685.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A isoform 2 [Macaca mulatta]
 gi|114581964|ref|XP_515940.2| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A isoform 2 [Pan troglodytes]
 gi|332209454|ref|XP_003253827.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A isoform 1 [Nomascus
           leucogenys]
 gi|74735517|sp|O75569|PRKRA_HUMAN RecName: Full=Interferon-inducible double stranded RNA-dependent
           protein kinase activator A; AltName: Full=PKR-associated
           protein X; AltName: Full=PKR-associating protein X;
           AltName: Full=Protein activator of the
           interferon-induced protein kinase; AltName: Full=Protein
           kinase, interferon-inducible double stranded
           RNA-dependent activator
 gi|4927416|gb|AAD33099.1|AF083033_1 PKR-associating protein RAX [Homo sapiens]
 gi|3290198|gb|AAC25672.1| protein activator of the interferon-induced protein kinase [Homo
           sapiens]
 gi|12052756|emb|CAB66550.1| hypothetical protein [Homo sapiens]
 gi|14495717|gb|AAH09470.1| Protein kinase, interferon-inducible double stranded RNA dependent
           activator [Homo sapiens]
 gi|30583325|gb|AAP35907.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator [Homo sapiens]
 gi|49065476|emb|CAG38556.1| PRKRA [Homo sapiens]
 gi|61362125|gb|AAX42165.1| protein kinase interferon-inducible double stranded RNA dependent
           activator [synthetic construct]
 gi|61362132|gb|AAX42166.1| protein kinase interferon-inducible double stranded RNA dependent
           activator [synthetic construct]
 gi|62630137|gb|AAX88882.1| unknown [Homo sapiens]
 gi|119631441|gb|EAX11036.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator, isoform CRA_c [Homo sapiens]
 gi|158254634|dbj|BAF83290.1| unnamed protein product [Homo sapiens]
 gi|190689557|gb|ACE86553.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator protein [synthetic construct]
 gi|307685745|dbj|BAJ20803.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator [synthetic construct]
          Length = 313

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 90  RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 62  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100


>gi|321460750|gb|EFX71789.1| hypothetical protein DAPPUDRAFT_326825 [Daphnia pulex]
          Length = 204

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 5/150 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTH--SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LEK +GY F N+  L+ ALTH  S+ +    +  +R E LGD+ LG LI    +  + + 
Sbjct: 38  LEKILGYEFQNKDNLKLALTHTISNPTKCPSKDSDRSESLGDKFLGALIMVNCYKTYPTY 97

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
             GEL+   + +   +T + +A     A         R  +      + AD+ E++ A++
Sbjct: 98  GAGELANLTSMITCNDTFAVLAV---PALIPTTIPGERISIEIDYPKVYADLFEAVAASI 154

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
           Y+D   +        +   R         +
Sbjct: 155 YVDCNEDFNTFRRVFFAIMRETIDNFMTNN 184


>gi|218283082|ref|ZP_03489177.1| hypothetical protein EUBIFOR_01763 [Eubacterium biforme DSM 3989]
 gi|218216151|gb|EEC89689.1| hypothetical protein EUBIFOR_01763 [Eubacterium biforme DSM 3989]
          Length = 198

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 1/150 (0%)

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
            F      +EG+++      V   T   + R+L    F+R+     K       SI AD 
Sbjct: 31  YFLMEPKMREGQMTTLRAQTVCESTLYVLNRQLGWYEFLRLGVGEEKTGGRNRESILADQ 90

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ I A+Y+D G  V    + KY K    +   +   D KT LQE   A    T +YK+
Sbjct: 91  FEACIGAIYIDQGYHVCDEILTKYMKPVFKQEKSEAVTDYKTHLQEVIQADSRKTIQYKL 150

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
               GP + P FT+ V +  +   QG   +
Sbjct: 151 LEEKGPSNAPTFTMGVYLDDILLGQGTSST 180


>gi|62897775|dbj|BAD96827.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator variant [Homo sapiens]
          Length = 313

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 90  RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 62  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100


>gi|195403581|ref|XP_002060356.1| GJ18414 [Drosophila virilis]
 gi|194147402|gb|EDW63114.1| GJ18414 [Drosophila virilis]
          Length = 633

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 3/118 (2%)

Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
                +F+  +     E  +         +            +     +     K  +  
Sbjct: 3   NSVNSNFVQHVVTASSEGNMNGYNRKSPQKRRYDMPKYAVPPKKKSGKERVPQPKNTVAM 62

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               + G    YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 63  LNELRHG--LIYKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATALR 117


>gi|158261305|dbj|BAF82830.1| unnamed protein product [Homo sapiens]
          Length = 479

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAGAMLLQLG 342



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     +   + R N         +    +    +++++    +      T   A    +
Sbjct: 81  YRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A   L        +  +    +         +   + + E A  +        V   S
Sbjct: 141 MKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVSFE-VIKES 199

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 200 GPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQELK 241



 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|332031602|gb|EGI71074.1| Double-stranded RNA-binding protein Staufen-like protein 2
           [Acromyrmex echinatior]
          Length = 804

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
             +      L         +  +Y++T   GP H  RFTV +++           S + A
Sbjct: 194 NMKEKTPMCLLNELARFNRIQHQYRLTNEQGPAHKKRFTVTLKLGEEEY-VAEGPSIKKA 252

Query: 212 EQVAAAEVLKR 222
           +  AA E L +
Sbjct: 253 QHSAATEALTK 263



 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              SG  H   F     + G     G   SK+ +++ AA  +L    
Sbjct: 443 VSESGKPHIRTFMTKCTV-GEKVTVGEGSSKKVSKKRAAELMLDELK 488


>gi|322800091|gb|EFZ21197.1| hypothetical protein SINV_10966 [Solenopsis invicta]
          Length = 804

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
             +      L         +  +Y++T   GP H  RFTV +++           S + A
Sbjct: 195 NMKEKTPMCLLNELARFNRIQHQYRLTNEQGPAHKKRFTVTLKLGEEEY-VAEGPSIKKA 253

Query: 212 EQVAAAEVLKR 222
           +  AA E L +
Sbjct: 254 QHSAATEALTK 264



 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              SG  H   F     + G     G   SK+ +++ AA  +L    
Sbjct: 443 VSESGKPHIRTFMTKCTV-GEKVTVGEGSSKKVSKKRAAELMLDELK 488


>gi|301628882|ref|XP_002943575.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
           adenosine deaminase-like [Xenopus (Silurana) tropicalis]
          Length = 1170

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             E+++  + GP HDP+FT  V I        +  SK+ A+Q+AA   ++  
Sbjct: 592 MCEFQLVSQEGPPHDPKFTYTVRIGNQTFPPVVANSKKMAKQLAAEAAVREL 643



 Score = 38.4 bits (87), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 9/113 (7%)

Query: 104 RKDVCSFMTSIQADVVESLIAALYLD---------GGIEVAGTFVDKYWKQRALKSGKFR 154
             +   + +    + + ++ A    D            E    +       R  K    R
Sbjct: 401 DFENGKWASDDIPEAMNAMNAMNQSDVLVGIPEAEIHNEFTQAYEPVKEFNRLEKLLACR 460

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                              ++ +  +SGP HDPRF +   I G +       S
Sbjct: 461 EKNPVSGLLEFTHYCSQHCDFVLLNQSGPSHDPRFKIQAVIDGRSFPVAEASS 513


>gi|195447262|ref|XP_002071135.1| GK25300 [Drosophila willistoni]
 gi|194167220|gb|EDW82121.1| GK25300 [Drosophila willistoni]
          Length = 720

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 3/104 (2%)

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ++E ++     + G +            +     +     K  +      + G+T  YK+
Sbjct: 104 IIERIMNGYNREAGKKRRYEMPQYAVSPKKKAIKERIPQPKNTVAMLNELRHGLT--YKM 161

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             ++GP H P FT+ V + G     G   SK+ A   AAA  L+
Sbjct: 162 ESQTGPVHAPLFTISVVVDGQKY-MGQGRSKKVARIEAAATALR 204


>gi|74004908|ref|XP_545545.2| PREDICTED: similar to protein kinase, interferon-inducible double
           stranded RNA dependent activator [Canis familiaris]
 gi|194043952|ref|XP_001927740.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A [Sus scrofa]
          Length = 313

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 90  RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 62  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100


>gi|6755162|ref|NP_036001.1| interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Mus musculus]
 gi|81882073|sp|Q9WTX2|PRKRA_MOUSE RecName: Full=Interferon-inducible double stranded RNA-dependent
           protein kinase activator A; AltName: Full=PKR-associated
           protein X; AltName: Full=PKR-associating protein X;
           Short=RAX; AltName: Full=Protein activator of the
           interferon-induced protein kinase; AltName: Full=Protein
           kinase, interferon-inducible double stranded
           RNA-dependent activator
 gi|4927414|gb|AAD33098.1|AF083032_1 PKR-associating protein RAX [Mus musculus]
 gi|15030117|gb|AAH11311.1| Protein kinase, interferon inducible double stranded RNA dependent
           activator [Mus musculus]
 gi|74196321|dbj|BAE33056.1| unnamed protein product [Mus musculus]
 gi|123233430|emb|CAM25296.1| protein kinase, interferon inducible double stranded RNA dependent
           activator [Mus musculus]
 gi|148695265|gb|EDL27212.1| protein kinase, interferon inducible double stranded RNA dependent
           activator, isoform CRA_a [Mus musculus]
          Length = 313

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 90  RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 62  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100


>gi|328784563|ref|XP_003250468.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           [Apis mellifera]
          Length = 763

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
             +      L         +  +Y++T   GP H  RFTV +++           S + A
Sbjct: 178 NMKEKTPMCLLNELARFNKIQHQYRLTNEQGPAHKKRFTVTLKLGEEEY-VAEGPSIKKA 236

Query: 212 EQVAAAEVLKR 222
           +  AA E L +
Sbjct: 237 QHSAATEALTK 247



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               G  H   F     +       G   SK+ +++ AA  +L+   
Sbjct: 424 VSEIGKPHIRTFRTKCTVGDKV-TLGEGPSKKVSKKHAAEFMLEELN 469


>gi|149022336|gb|EDL79230.1| protein kinase, interferon inducible double stranded RNA dependent
           activator, isoform CRA_b [Rattus norvegicus]
          Length = 313

 Score = 56.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 90  RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 62  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100


>gi|168021239|ref|XP_001763149.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685632|gb|EDQ72026.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 496

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 81/285 (28%), Gaps = 66/285 (23%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSI-------------SHSYQESYER-------- 42
           LR+  L +++G +  +R LL + L H S                    S++R        
Sbjct: 204 LRFRILSEKLGSSIHSRELLLRILVHKSYYLSKMPQSMKENKLRKPLMSWQRSETMDDDN 263

Query: 43  --------------LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL---------- 78
                         L  +GD +L L  S  L         G                   
Sbjct: 264 LMSFSDAHGEARLQLALVGDTVLNLAASLHLIRRNPLLSTGLWESFVFVCRKWTLRKELD 323

Query: 79  -------------VSAETCSQVAREL--------DLASFIRVSSDLRKDVCSFMTSIQAD 117
                        V     ++V   L            F +        +        AD
Sbjct: 324 SLSCDAGFNNGAKVCNSNLARVWCTLLDLRELVLCDPPFSQSKKPSATTLLELQMKTCAD 383

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+ I  LY++ G+E A  FV+       L +   R       +              +
Sbjct: 384 TLEAYIGGLYVEKGLESALKFVETRLLPLLLLAEPKRNPVALLHERCVLTLQEKPDYKLI 443

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              +    +    + V + GL  + G+  S++ A + AA + L +
Sbjct: 444 GIDNQNTPNELCRIRVYVKGLRMSTGIGKSQKLARRDAAEKALLK 488


>gi|194691820|gb|ACF79994.1| unknown [Zea mays]
          Length = 266

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223
                       G  H P+FT  VE+     +  G    K+ AEQ AA    +  
Sbjct: 14  YKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDAARVAYEIL 68



 Score = 40.7 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F  +V   G A       +K+ AEQ AA  V+K  
Sbjct: 122 FAAIVVFDGNAYHGESAPNKKDAEQNAARVVIKSI 156


>gi|212276238|ref|NP_001130203.1| hypothetical protein LOC100191297 [Zea mays]
 gi|194688536|gb|ACF78352.1| unknown [Zea mays]
          Length = 323

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223
                       G  H P+FT  VE+     +  G    K+ AEQ AA    +  
Sbjct: 71  YKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDAARVAYEIL 125



 Score = 40.7 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F  +V   G A       +K+ AEQ AA  V+K  
Sbjct: 179 FAAIVVFDGNAYHGESAPNKKDAEQNAARVVIKSI 213


>gi|109097111|ref|XP_001110800.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A-like [Macaca mulatta]
          Length = 251

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 47  RAAEAAINIWKDNASICFAVPDPLMSDPSKQPKNQLNPVGSLQELAFHHGWRRPEYTLSQ 106

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T V  +       G   SK+ A++ AA + L +
Sbjct: 107 EGGPAHKREYTTVCRLE-AFMETGKGASKKQAKRNAAEKFLAK 148



 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 4/42 (9%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           H P FT  V +  +   +G    K+  +  AA        IW
Sbjct: 19  HVPTFTFRVTVGDIT-CRGEGTGKKLVKHRAAEAA---INIW 56


>gi|50417953|gb|AAH77753.1| Stau2-B-prov protein [Xenopus laevis]
          Length = 644

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 344 MNPISRLAQIQQAKKEKEPEYVLLSERGIQRRREFIMQVKV-GEEAATGTGPNKKTAKRN 402

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 403 AAEAMLLQLG 412



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 1/76 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
                    +      L         + P+YK+    GP H   FTV + +      Q  
Sbjct: 34  PLHDNMTNPKEKTPMCLVNELARFNRIQPQYKLLDERGPAHSKLFTVQLTLGEQTW-QAE 92

Query: 205 DCSKRAAEQVAAAEVL 220
             S + A+  AA+  L
Sbjct: 93  STSIKKAQHAAASLAL 108



 Score = 36.4 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 45/164 (27%), Gaps = 6/164 (3%)

Query: 44  EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
           E  G  +     +               +  +  +        + +      +++++   
Sbjct: 137 ELNGLAMRRGEPAIYRSMDPKPLPNHRANYNYRGMYHQRYLCPMLKTF----YVQLTVGN 192

Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
            +      T   A    +L A   L        + ++    +   +     +   + + E
Sbjct: 193 NEFYGEGKTRQAARHSAALKALHALRNEPIPERSSLNGEANRGPEEDKDANKSEISLVFE 252

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            +  +        V   SGP H   F   V + G   A+G   S
Sbjct: 253 ISLKRNLPLSFE-VIKESGPPHMKSFVTRVMV-GEFTAEGEGNS 294


>gi|148225849|ref|NP_001086918.1| staufen, RNA binding protein, homolog 2 [Xenopus laevis]
 gi|83318414|gb|AAI08851.1| Stau2-b protein [Xenopus laevis]
          Length = 689

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 389 MNPISRLAQIQQAKKEKEPEYVLLSERGIQRRREFIMQVKV-GEEAATGTGPNKKTAKRN 447

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 448 AAEAMLLQLG 457



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 1/76 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
                    +      L         + P+YK+    GP H   FTV + +      Q  
Sbjct: 79  PLHDNMTNPKEKTPMCLVNELARFNRIQPQYKLLDERGPAHSKLFTVQLTLGEQTW-QAE 137

Query: 205 DCSKRAAEQVAAAEVL 220
             S + A+  AA+  L
Sbjct: 138 STSIKKAQHAAASLAL 153



 Score = 36.4 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 45/164 (27%), Gaps = 6/164 (3%)

Query: 44  EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
           E  G  +     +               +  +  +        + +      +++++   
Sbjct: 182 ELNGLAMRRGEPAIYRSMDPKPLPNHRANYNYRGMYHQRYLCPMLKTF----YVQLTVGN 237

Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
            +      T   A    +L A   L        + ++    +   +     +   + + E
Sbjct: 238 NEFYGEGKTRQAARHSAALKALHALRNEPIPERSSLNGEANRGPEEDKDANKSEISLVFE 297

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            +  +        V   SGP H   F   V + G   A+G   S
Sbjct: 298 ISLKRNLPLSFE-VIKESGPPHMKSFVTRVMV-GEFTAEGEGNS 339


>gi|224046380|ref|XP_002199282.1| PREDICTED: staufen homolog 2 [Taeniopygia guttata]
          Length = 680

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++       G   +K+ A++ 
Sbjct: 378 MNPISRLAQIQQAKKEKEPEYVLLSERGMPRRREFVMQVKVGNDT-TTGTGPNKKIAKRN 436

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 437 AAEAMLLQLG 446



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
                    +      L         + P+YK+    GP H   FTV + +      +  
Sbjct: 68  PLQDNMANPKEKTPMCLVNELARFNRIQPQYKLLNERGPAHAKMFTVQLTLGEQTW-EAE 126

Query: 205 DCSKRAAEQVAAAEVL 220
             S + A+  AA++ L
Sbjct: 127 GSSIKKAQHAAASKAL 142



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              SGP H   F   V + G   A+G   SK+ +++ AA  VL+   
Sbjct: 300 IKESGPPHMKSFVTRVTV-GEFTAEGEGNSKKLSKKRAAMAVLQELK 345



 Score = 43.4 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 216 KVFYVQLTVGNSEFF-GEGKTRQAARHNAAMKALQAL 251


>gi|45387553|ref|NP_991124.1| double-stranded RNA-binding protein Staufen homolog 1 [Danio rerio]
 gi|40807139|gb|AAH65333.1| Staufen, RNA binding protein, homolog 1 (Drosophila) [Danio rerio]
          Length = 636

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +  +++V   +G  H   F V V + G    +G   SK+ A++ AA  VL+  
Sbjct: 232 NMPVDFEVLKEAGAPHMKSFVVRVVV-GEFAGEGEGKSKKIAKKQAAIAVLEEL 284



 Score = 55.7 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V ++G   A+GM  SK+ A++ 
Sbjct: 320 MNPISRLAQIQQAKKEKEPEYTLVTERGLPRRREFVMQVSVAGQN-AEGMGPSKKVAKRN 378

Query: 215 AAAEVLKREG 224
           AA ++L+  G
Sbjct: 379 AAEKMLELLG 388



 Score = 48.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 1/73 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         + PEYK+    GP H   F+V + +           S +
Sbjct: 1   MANPKEKTPMCLVNELARYNKIQPEYKLLSEEGPAHSKIFSVRLTLGDQHW-DAEGTSIK 59

Query: 210 AAEQVAAAEVLKR 222
            A+  AA+  L +
Sbjct: 60  KAQHSAASSALAQ 72


>gi|307184289|gb|EFN70747.1| Double-stranded RNA-binding protein Staufen-like protein 2
           [Camponotus floridanus]
          Length = 607

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            +      L         +  +Y++T   GP H  RFTV +++           S + A+
Sbjct: 1   MKEKTPMCLLNELARFNRIQHQYRLTNEQGPAHKKRFTVTLKLGEEEY-VAEGPSIKKAQ 59

Query: 213 QVAAAEVLKR 222
             AA E L +
Sbjct: 60  HSAATEALTK 69



 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              SG  H   F     +       G   SK+ +++ AA  +L+   
Sbjct: 248 VSESGKPHIRTFMTKCTVGDKV-TVGEGSSKKVSKKRAAELMLEELK 293


>gi|307353641|ref|YP_003894692.1| ribonuclease III [Methanoplanus petrolearius DSM 11571]
 gi|307156874|gb|ADN36254.1| ribonuclease III [Methanoplanus petrolearius DSM 11571]
          Length = 173

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNH 62
             LE+ IGY F N  LL +ALT  + S           + L  LGD ++ +++       
Sbjct: 32  DELEEIIGYRFKNHELLTRALTRLAYSLENDLPEGFHMDALATLGDAVIDVIVL-ESLMK 90

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                +GELSV  + +V+     + A  ++L  ++                + A++ E+L
Sbjct: 91  SGLYSKGELSVAKSDIVNMTRLRKAAESIELFRYVHWGKGEEASHIWTSGRVMAELCEAL 150

Query: 123 IAALYLDG 130
             A+YLDG
Sbjct: 151 AGAVYLDG 158


>gi|195469794|ref|XP_002099821.1| GE16707 [Drosophila yakuba]
 gi|194187345|gb|EDX00929.1| GE16707 [Drosophila yakuba]
          Length = 632

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y     +     + KY   +     +     K  +      + G    YK+  ++GP H 
Sbjct: 25  YNRKSPQKRRYEMPKYAAPKKKICKERIPQPKNTVAMLNELRHG--LIYKLESQTGPVHA 82

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 83  PLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|114626614|ref|XP_001139686.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 686

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 1/126 (0%)

Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
             +K   S + S +     S+     L    E          K+      K  +      
Sbjct: 336 PFQKYSWSVIESWRQLPPCSVFVLSPLKRPFEDGLGDDKDPNKKMKRNLRKSVKAIDLMN 395

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                 +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+
Sbjct: 396 ALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQ 454

Query: 222 REGIWT 227
             G  T
Sbjct: 455 AMGYPT 460



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 544 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 572


>gi|114626612|ref|XP_001139859.1| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes]
          Length = 677

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 1/126 (0%)

Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
             +K   S + S +     S+     L    E          K+      K  +      
Sbjct: 336 PFQKYSWSVIESWRQLPPCSVFVLSPLKRPFEDGLGDDKDPNKKMKRNLRKSVKAIDLMN 395

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                 +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+
Sbjct: 396 ALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQ 454

Query: 222 REGIWT 227
             G  T
Sbjct: 455 AMGYPT 460



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 535 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 563


>gi|114626616|ref|XP_001139781.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
          Length = 676

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 1/126 (0%)

Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
             +K   S + S +     S+     L    E          K+      K  +      
Sbjct: 336 PFQKYSWSVIESWRQLPPCSVFVLSPLKRPFEDGLGDDKDPNKKMKRNLRKSVKAIDLMN 395

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                 +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+
Sbjct: 396 ALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQ 454

Query: 222 REGIWT 227
             G  T
Sbjct: 455 AMGYPT 460



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 534 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 562


>gi|281352310|gb|EFB27894.1| hypothetical protein PANDA_007403 [Ailuropoda melanoleuca]
          Length = 296

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 73  RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 132

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 133 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 174



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 45  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 83


>gi|114581966|ref|XP_001156031.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 270

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 47  RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 106

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 107 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 148



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 19  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 57


>gi|213417919|ref|NP_001132990.1| interferon-inducible double stranded RNA-dependent protein kinase
           activator A isoform 3 [Homo sapiens]
 gi|332209456|ref|XP_003253828.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A isoform 2 [Nomascus
           leucogenys]
 gi|37955186|gb|AAP20061.1| HSD14 [Homo sapiens]
 gi|119631439|gb|EAX11034.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator, isoform CRA_a [Homo sapiens]
          Length = 288

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 65  RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 124

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 125 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 166



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 37  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 75


>gi|157116156|ref|XP_001658385.1| staufen [Aedes aegypti]
 gi|108876611|gb|EAT40836.1| staufen [Aedes aegypti]
          Length = 1103

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         +  +Y++T  SGP H  RFTV +++           S + A+  AA 
Sbjct: 344 PMCLVNELARYNKIQHQYRLTCESGPAHKKRFTVTLKLGDEEY-TAEGPSIKKAQHSAAH 402

Query: 218 EVL 220
           E +
Sbjct: 403 EAI 405



 Score = 51.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
             +  + L +   A+    P Y +    G      F + V  SG + A G+  +K+ A++
Sbjct: 726 MVNPISRLMQIQQARKEKEPVYTLVEERGVARRREFIMEVSASGKS-ATGIGPTKKLAKK 784

Query: 214 VAAAEVLKREG 224
            AA  +L   G
Sbjct: 785 EAAENLLVMLG 795



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
             + A    D +              +   L      K  +T +++V    GP H   FT
Sbjct: 591 TPDTANPVSDSHNTSIDSDDPNSDLKSPISLVHEMALKRKLTVQFEVHGEKGPPHMKVFT 650

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + ++ G    +G    K+ +++ AA ++L   
Sbjct: 651 TLCKV-GSIVTEGEGNGKKLSKKRAAEKMLDEL 682


>gi|28502787|gb|AAH47175.1| Ilf3 protein [Danio rerio]
          Length = 612

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +YK+  ++GP H P FT+ VE+ G    +    SKR A+   A +VL+  G+ T
Sbjct: 421 QYKLISQTGPVHVPVFTMSVEVDGKNF-EASGPSKRTAKLHVAVKVLQDMGLPT 473



 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VEI G    QG   +
Sbjct: 547 ISETGGSHDKRFVMEVEIDGQKF-QGTGSN 575


>gi|47086831|ref|NP_997764.1| interleukin enhancer-binding factor 3 homolog [Danio rerio]
 gi|45501209|gb|AAH67172.1| Interleukin enhancer binding factor 3 [Danio rerio]
          Length = 833

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +YK+  ++GP H P FT+ VE+ G    +    SKR A+   A +VL+  G+ T
Sbjct: 421 QYKLISQTGPVHVPVFTMSVEVDGKNF-EASGPSKRTAKLHVAVKVLQDMGLPT 473



 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VEI G    QG   +
Sbjct: 547 ISETGGSHDKRFVMEVEIDGQKF-QGTGSN 575


>gi|62510785|sp|Q6NXA4|ILF3_DANRE RecName: Full=Interleukin enhancer-binding factor 3 homolog
          Length = 833

 Score = 56.1 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +YK+  ++GP H P FT+ VE+ G    +    SKR A+   A +VL+  G+ T
Sbjct: 421 QYKLISQTGPVHVPVFTMSVEVDGKNF-EASGPSKRTAKLHVAVKVLQDMGLPT 473



 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VEI G    QG   +
Sbjct: 547 ISETGGSHDKRFVMEVEIDGQKF-QGTGSN 575


>gi|222631053|gb|EEE63185.1| hypothetical protein OsJ_17994 [Oryza sativa Japonica Group]
          Length = 787

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220
             T + GP H+P F   V I+  +        +++AAEQ AA   L
Sbjct: 54  YHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVAL 99



 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F   VEI G+        +K+ AE  AA   L
Sbjct: 501 FLCTVEIGGIQYIGAAARTKKDAEIKAARTAL 532


>gi|125551761|gb|EAY97470.1| hypothetical protein OsI_19399 [Oryza sativa Indica Group]
          Length = 787

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220
             T + GP H+P F   V I+  +        +++AAEQ AA   L
Sbjct: 54  YHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVAL 99



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F   VEI G+        +K+ AE  AA   L
Sbjct: 501 FICTVEIGGIQYIGAAARTKKDAEIKAARTAL 532


>gi|115463113|ref|NP_001055156.1| Os05g0307400 [Oryza sativa Japonica Group]
 gi|122169278|sp|Q0DJA3|DRB3_ORYSJ RecName: Full=Double-stranded RNA-binding protein 3; AltName:
           Full=dsRNA-binding protein 3
 gi|113578707|dbj|BAF17070.1| Os05g0307400 [Oryza sativa Japonica Group]
 gi|215704133|dbj|BAG92973.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 437

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220
             T + GP H+P F   V I+  +        +++AAEQ AA   L
Sbjct: 54  YHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVAL 99



 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F   VEI G+        +K+ AE  AA   L
Sbjct: 151 FLCTVEIGGIQYIGAAARTKKDAEIKAARTAL 182


>gi|156371296|ref|XP_001628700.1| predicted protein [Nematostella vectensis]
 gi|156215684|gb|EDO36637.1| predicted protein [Nematostella vectensis]
          Length = 423

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
             +     L         + PEY V   +GP H   F V +++  +   +GM  + + A+
Sbjct: 1   MSQKTPISLMNELAKANNLNPEYNVIEETGPAHKKTFKVQLKLGDIGIWEGMANNIKLAK 60

Query: 213 QVAAAEVLKREGI 225
             AA + L+  G+
Sbjct: 61  HKAAEKGLENCGL 73



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           ++ + L +    +    P Y +    G      FT+ V++ G   A G+  +K+ A++ A
Sbjct: 341 NSISILGQILQRRHDPAPVYSLVEERGHMMKKEFTLRVKV-GSHEALGVGPNKKTAKKNA 399

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 400 AEAMLQLMG 408



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                +  +  +++    +GP H  +F +   + G    +G    K+ A++ AA  +L  
Sbjct: 244 YEIATRMKMMVDFQDMENAGPAHMKKFKIKATV-GPYMTEGEGNRKKDAKKEAAVRMLAE 302

Query: 223 EG 224
             
Sbjct: 303 LK 304


>gi|296204404|ref|XP_002749315.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A-like [Callithrix jacchus]
          Length = 302

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 79  RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 138

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 139 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 180



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 51  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 89


>gi|71834292|ref|NP_001025236.1| interleukin enhancer binding factor 3a [Danio rerio]
 gi|66911683|gb|AAH96956.1| Zgc:113842 [Danio rerio]
          Length = 820

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            ++GP+H+P+F++ VE+ G+   +    SKR+A+   A +VL   G+
Sbjct: 479 SQTGPEHEPQFSMTVEVDGVTY-EATGPSKRSAKLHVAQKVLVALGV 524


>gi|170027969|ref|XP_001841869.1| staufen [Culex quinquefasciatus]
 gi|167868339|gb|EDS31722.1| staufen [Culex quinquefasciatus]
          Length = 939

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L            +Y++T  SGP H  RFTV +++           S + A+  AA 
Sbjct: 267 PMCLVNELARYNKCQHQYRLTGESGPAHKKRFTVTLKLGDEEY-TAEGPSIKKAQHSAAN 325

Query: 218 EVL 220
           E +
Sbjct: 326 EAI 328



 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
             +  + L +   A+    PEY +    G      F + V  SG   A G+  +K+ A++
Sbjct: 645 MVNPISRLMQIQQARKEKEPEYTLVEERGMARRREFIMEVLASGKT-ASGVGPTKKIAKK 703

Query: 214 VAAAEVLKREG 224
            AA  +L   G
Sbjct: 704 EAAESLLVMLG 714



 Score = 50.7 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
           + +              +   L      K  +  +++V    GP H   FT + ++ G  
Sbjct: 519 NCHDTSIDSDDPNSELKSPISLVHELALKRKMAVQFEVHSEKGPPHMKVFTTICKV-GTI 577

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
             +G    K+ +++ AA ++L   
Sbjct: 578 VTEGEGNGKKISKKRAAEKMLDEL 601


>gi|242089535|ref|XP_002440600.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
 gi|241945885|gb|EES19030.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
          Length = 573

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
             T RSGP H P FT  VE++G         +K+ A++ AA      LK+ 
Sbjct: 106 YTTIRSGPGHTPVFTCTVELAGKTFTGNPGKTKKQAQKNAAMAAWSDLKQL 156



 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
                     R GPDH PRF   V  +G          + R AE  AA   L   
Sbjct: 14  CFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPAFCSTLRQAEHAAAEVALNEL 68


>gi|156394093|ref|XP_001636661.1| predicted protein [Nematostella vectensis]
 gi|156223766|gb|EDO44598.1| predicted protein [Nematostella vectensis]
          Length = 414

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
              + +        +     L E+A  +  V PEY  T   G +    F   V ISG+  
Sbjct: 200 NNKQPKEWVINPGGKTPVAILHEYAQRELKVKPEYSHT--EGNNAATPFVAEVRISGMVY 257

Query: 201 AQGMDCSKRAAEQVAAAEVLKRE 223
            +G   SKR A+Q AA   L+  
Sbjct: 258 GKGEGASKRLAKQHAAETALEVL 280



 Score = 39.1 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
                LQE      GV                + T  +  +G   A G   +K+   Q+A
Sbjct: 322 SPYHILQECLKRYQGVYQSTIDFKMKPEPDQRQHTYEITCAGHT-ATGFCKNKKIGRQLA 380

Query: 216 AAEVLKRE 223
           A  +LK+ 
Sbjct: 381 AQAILKKL 388


>gi|213417911|ref|NP_001132989.1| interferon-inducible double stranded RNA-dependent protein kinase
           activator A isoform 2 [Homo sapiens]
 gi|21739361|emb|CAD38725.1| hypothetical protein [Homo sapiens]
 gi|119631440|gb|EAX11035.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator, isoform CRA_b [Homo sapiens]
          Length = 302

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 79  RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 138

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 139 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 180



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 22/90 (24%), Gaps = 4/90 (4%)

Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD---HDPRFTVVVE 194
                +                   +  H     T    V      D   H P FT  V 
Sbjct: 1   MQSTPFCGFCSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVT 60

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  +    G   SK+ A+  AA   +    
Sbjct: 61  VGDIT-CTGEGTSKKLAKHRAAEAAINILK 89


>gi|114052769|ref|NP_001039335.1| interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Bos taurus]
 gi|122135712|sp|Q2HJ92|PRKRA_BOVIN RecName: Full=Interferon-inducible double stranded RNA-dependent
           protein kinase activator A; AltName: Full=Protein
           activator of the interferon-induced protein kinase;
           AltName: Full=Protein kinase, interferon-inducible
           double stranded RNA-dependent activator
 gi|87578189|gb|AAI13247.1| Protein kinase, interferon-inducible double stranded RNA dependent
           activator [Bos taurus]
 gi|296490704|gb|DAA32817.1| interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Bos taurus]
          Length = 313

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 90  RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 62  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100


>gi|123974683|ref|XP_001313928.1| RNase3 domain containing protein [Trichomonas vaginalis G3]
 gi|121895887|gb|EAY01056.1| RNase3 domain containing protein [Trichomonas vaginalis G3]
          Length = 810

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 69/188 (36%), Gaps = 6/188 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH 62
                ++  Y F N  ++ + L   S    S  +  +YERLE+LGD +L LL    +FN 
Sbjct: 374 IRKFTEKFNYTFKNWHIVWQFLIDPSYYFRSSQFIHNYERLEYLGDTVLDLLFGISVFNG 433

Query: 63  FDSA-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
             +   EG +S    + V   T S+++  LDL S +  S+    D+    ++   + +  
Sbjct: 434 CYNYANEGLMSELKIAFVKNRTFSKISEILDLKSLLCTSTPTNYDLGKKGSADLFEALFG 493

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            I               + + +++                 + + +   +      K   
Sbjct: 494 AILLDSNISKCIEIFKKIIEEYQEEFLETVRITHADKVIKYITKTSVDDYMNLVMPKKVS 553

Query: 180 RSGPDHDP 187
           R   DH+ 
Sbjct: 554 RDHVDHEK 561



 Score = 44.1 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 2   SALRYSTLEKRI--GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
             + +  L K +      +N +    ALTHSS+      +YER+EF+GD I+   +    
Sbjct: 555 DHVDHEKLSKILELDINPSNVTQFTVALTHSSVGK---YNYERIEFIGDLIVKYSLIVSQ 611

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELD 92
              F +A E  +S+  + L S +   + A ++ 
Sbjct: 612 MEAFPNATESGMSIASSFLKSNDFLGKRAYKIG 644


>gi|119182644|ref|XP_001242444.1| hypothetical protein CIMG_06340 [Coccidioides immitis RS]
          Length = 390

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 75/208 (36%), Gaps = 23/208 (11%)

Query: 17  FANRSLLEKALTH--------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             +++L     TH         S  H    SY+RLE LGD  L ++ + L+++ F +   
Sbjct: 141 IKDKTLETAVFTHQGEVHAQAPSAVH---SSYDRLEILGDAYLEVIATRLIWDRFQTLPA 197

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G +S     LV  ET +Q +        +++++D+R         ++ D+ E+ +AA+ L
Sbjct: 198 GRMSQIRELLVKNETLAQFSERYGFDRRVKIATDIRSQ-AKRWMKVKGDIFEAYVAAVIL 256

Query: 129 DGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
              +       +             +    A    +  A    G   + +    S P + 
Sbjct: 257 SDPVNGFNLVEEWLAHLWIPTLNHVQPENQAAHYKETLAKKVMGKGIKLRYINESPPVNR 316

Query: 187 P----RFTVVVEISG-----LAPAQGMD 205
                 F + V ++G          G  
Sbjct: 317 KGGMQTFFIGVYLTGWGWQDQHLGSGSG 344


>gi|17231599|ref|NP_488147.1| ribonuclease III [Nostoc sp. PCC 7120]
 gi|17133242|dbj|BAB75806.1| ribonuclease III [Nostoc sp. PCC 7120]
          Length = 202

 Score = 56.1 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 3/174 (1%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
           +YE+LEF+GD ++ L  + +L+  +     G+ +   + LVS    +Q+ARE  L   + 
Sbjct: 6   NYEQLEFVGDAVVRLAAAVMLWETYPDCPVGDFAAIRSVLVSDRILAQLAREYGLELHLL 65

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRD 156
           V+     D     + +       L A       +E+   ++D +++Q    ++    R +
Sbjct: 66  VAGSATSDKIGQESRLADAFEAVLGALYLSTSNLELIRPWLDHHFRQLAAEIRLDPARLN 125

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209
            K  LQEW  A+F V PEY+V   +  +    RF   V + G    +G   S +
Sbjct: 126 YKAALQEWTQAQFKVLPEYRVVEINQANRTQERFAAEVWLHGNKLGEGKGRSIK 179


>gi|149639809|ref|XP_001507143.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 719

 Score = 55.7 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L+      F   P  +VT  +GP H   F   V + G    +G   SK+ +++ AA  VL
Sbjct: 288 LKRNMPVNFEFFPLKQVTKENGPPHMKSFLTKVSV-GEFTGEGEGKSKKISKKNAAIAVL 346

Query: 221 KREG 224
           +   
Sbjct: 347 EELK 350



 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V+I G+   +G   +K+ A++ 
Sbjct: 385 MNPISRLAQIQQAKKEREPEYLLVTERGLPRRREFVMQVKI-GVHTTEGAGTNKKVAKRN 443

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 444 AAENMLELLG 453



 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                +      L         + PEYK+    GP H   FTV + +      Q    S 
Sbjct: 72  NMANPKEKTPMCLVNELARFNKIQPEYKLLSEQGPAHSKVFTVQLTLGDQRW-QSEGTSI 130

Query: 209 RAAEQVAAAEVLK 221
           + A+  AA + L+
Sbjct: 131 KKAQHGAATKALQ 143


>gi|320040901|gb|EFW22834.1| RNase3 domain-containing protein [Coccidioides posadasii str.
           Silveira]
          Length = 390

 Score = 55.7 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 75/208 (36%), Gaps = 23/208 (11%)

Query: 17  FANRSLLEKALTH--------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             +++L     TH         S  H    SY+RLE LGD  L ++ + L+++ F +   
Sbjct: 141 IKDKTLETAVFTHQGEVHAQAPSAVH---SSYDRLEILGDAYLEVIATRLIWDRFQTLPA 197

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G +S     LV  ET +Q +        ++++SD+R         ++ D+ E+ +AA+ L
Sbjct: 198 GRMSQIRELLVKNETLAQFSERYGFDRRVKIASDIRSQ-AKRWMKVKGDIFEAYVAAVIL 256

Query: 129 DGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
              +       +             +    A    +  A    G   + +    S P + 
Sbjct: 257 SDPVNGFNLVEEWLAYLWIPTLNHVQPENQAAHYKETLAKKVMGKGIKLRYINESPPINR 316

Query: 187 P----RFTVVVEISG-----LAPAQGMD 205
                 F + V ++G          G  
Sbjct: 317 KGGMQTFFIGVYLTGWGWQDQHLGSGSG 344


>gi|303319323|ref|XP_003069661.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240109347|gb|EER27516.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 390

 Score = 55.7 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 75/208 (36%), Gaps = 23/208 (11%)

Query: 17  FANRSLLEKALTH--------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             +++L     TH         S  H    SY+RLE LGD  L ++ + L+++ F +   
Sbjct: 141 IKDKTLETAVFTHQGEVHAQAPSAVH---SSYDRLEILGDAYLEVIATRLIWDRFQTLPA 197

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G +S     LV  ET +Q +        ++++SD+R         ++ D+ E+ +AA+ L
Sbjct: 198 GRMSQIRELLVKNETLAQFSERYGFDRRVKIASDIRSQ-AKRWMKVKGDIFEAYVAAVIL 256

Query: 129 DGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
              +       +             +    A    +  A    G   + +    S P + 
Sbjct: 257 SDPVNGFNLVEEWLAYLWIPTLNHVQPENQAAHYKETLAKKVMGKGIKLRYINESPPINR 316

Query: 187 P----RFTVVVEISG-----LAPAQGMD 205
                 F + V ++G          G  
Sbjct: 317 KGGMQTFFIGVYLTGWGWQDQHLGSGSG 344


>gi|116785242|gb|ABK23649.1| unknown [Picea sitchensis]
          Length = 188

 Score = 55.7 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L+ +I Y F ++SLL K +TH+S S    ++   L  LG  I+   IS    +   +
Sbjct: 40  IEELQTKIKYQFKDKSLLAKTMTHASFS---LDNNAVLNILGSEIIEAAISFHYLSKNST 96

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             +G+L+ +   + +    S+ A +L L   IRV+  +       +      +  ++
Sbjct: 97  ISKGDLTSQKAKISNCSALSKDAFDLQLNELIRVAPKVDPKAQIIVCGCYRALFGAI 153


>gi|114654623|ref|XP_510148.2| PREDICTED: dicer1 isoform 7 [Pan troglodytes]
          Length = 1715

 Score = 55.7 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE---RLEF 45
            +   EK+I Y F N++ L +A TH+S  ++     E   RL F
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITGKEPTTRLHF 1708



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 58/195 (29%), Gaps = 20/195 (10%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
            G LS   +  VS     ++ ++  L                            +      
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGL-------PSRMVVSIFDPPVNWLPPGYVVNQDKSN 1393

Query: 129  DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                E      D       L       D + E   W   K     E         +H   
Sbjct: 1394 TDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYD-QEHIR- 1451

Query: 189  FTVVVEISGLAPAQG 203
                  I  +    G
Sbjct: 1452 -----FIDNMLMGSG 1461


>gi|307191761|gb|EFN75203.1| Interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Harpegnathos saltator]
          Length = 336

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 33/146 (22%), Gaps = 12/146 (8%)

Query: 90  ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149
            ++  ++                        + +                      R   
Sbjct: 32  HINTFTYKVTCDGFTATGTGRCKKDAKHEAANAMLTTIATHRNYPQLPASPATSPVRTPM 91

Query: 150 SGKFRRDAKTELQEW-----------AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
                   +                         PEY      GP H   FT+   +S  
Sbjct: 92  PDSLPMSPRMPANIPFVNTIGALQDLCAENNLQEPEYVPVSDVGPPHARVFTIRCVVSNF 151

Query: 199 APAQGMDCSKRAAEQVAAAEVLKREG 224
           +   G+  +K+ A+  AA +++ +  
Sbjct: 152 SE-DGVGTTKKQAKHDAAKKMVDKIN 176


>gi|148695266|gb|EDL27213.1| protein kinase, interferon inducible double stranded RNA dependent
           activator, isoform CRA_b [Mus musculus]
          Length = 210

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 1/89 (1%)

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
           +    V         K  K + +    LQE A       PEY ++   GP H   +T + 
Sbjct: 1   MFSFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTIC 60

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +       G   SK+ A++ AA + L +
Sbjct: 61  RLE-SFMETGKGASKKQAKRNAAEKFLAK 88


>gi|281414105|ref|ZP_06245847.1| RNAse III [Micrococcus luteus NCTC 2665]
          Length = 130

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLK 221
                  GP HDPR+   + +        +  SK+ AE+ AAA     L+
Sbjct: 73  RYAIEGQGPAHDPRYRATLVVGEREYGSAVASSKKQAERDAAAASWPALE 122


>gi|297806101|ref|XP_002870934.1| hypothetical protein ARALYDRAFT_486948 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316771|gb|EFH47193.1| hypothetical protein ARALYDRAFT_486948 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 770

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F+V V  +G     GM  +K+ A Q AA   L+  
Sbjct: 685 QFSVEVLFTGEKIGIGMGKTKKDAHQQAAENALRSL 720


>gi|126307762|ref|XP_001373191.1| PREDICTED: similar to adenosine deaminase, RNA-specific
           [Monodelphis domestica]
          Length = 1131

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +      K G T E+ +  + GP HDP+F   V++        M  SK+AA+Q+AA   +
Sbjct: 551 VLMEHVQKNGSTCEFLLISQEGPAHDPKFKYCVKMGSQTFPTMMANSKKAAKQMAAEVAV 610

Query: 221 KRE 223
           K  
Sbjct: 611 KAL 613



 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                  T E+ +  +SGP H+PRF     ISG         SK+ A Q AAA+ 
Sbjct: 443 YAQFTCQTCEFTLLEQSGPSHEPRFKYQAVISGRRFPPAEAGSKKLARQDAAAKA 497



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 675 VDQSGPPHEPKFIYQAKVGGRWFPAVSAHSKKQGKQEAADAALRVL 720


>gi|148234413|ref|NP_001079500.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator [Xenopus laevis]
 gi|82176774|sp|Q7ZYA5|PRKAA_XENLA RecName: Full=Interferon-inducible double stranded RNA-dependent
           protein kinase activator A homolog A
 gi|27696370|gb|AAH43873.1| Rbpa protein [Xenopus laevis]
          Length = 309

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
                  + + +    LQE A  K    PEY V   SGP H   FT+   +       G 
Sbjct: 112 DPKKPPNQMQENPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVE-TFVETGS 170

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             SK+ A++VAA ++L +  
Sbjct: 171 GTSKQVAKRVAAEKLLTKFK 190



 Score = 51.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
             +L      K G  P Y +    G  H+P FT  + I  +  + G   SK+ A+Q AA 
Sbjct: 32  PIQLLHEFGTKTGNHPVYTLEKAEGQAHNPSFTFRLVIGDIT-SLGEGPSKKTAKQKAAE 90

Query: 218 EVL 220
             L
Sbjct: 91  FAL 93


>gi|3334381|sp|Q91836|PRKAB_XENLA RecName: Full=Interferon-inducible double stranded RNA-dependent
           protein kinase activator A homolog B; AltName:
           Full=Double-stranded RNA-binding protein A; AltName:
           Full=XlRBPA
 gi|214739|gb|AAA49947.1| RNA binding protein [Xenopus laevis]
          Length = 298

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
                  + + +    LQE A  K    PEY V   SGP H   FT+   +       G 
Sbjct: 101 DPKKPPNQMQENPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVE-TFVETGS 159

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             SK+ A++VAA ++L +  
Sbjct: 160 GTSKQVAKRVAAEKLLTKFK 179



 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
             +L      K G  P Y +    G  H+P FT  + I  +  + G   SK+  +Q AA 
Sbjct: 21  PIQLLHEFGTKTGNHPVYTLEKAEGQAHNPSFTFRLVIGDIT-SLGEGPSKKTPKQKAAE 79

Query: 218 EVL 220
             L
Sbjct: 80  FAL 82


>gi|332229969|ref|XP_003264158.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 3
           [Nomascus leucogenys]
          Length = 490

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 211 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 269

Query: 224 GIWT 227
           G  T
Sbjct: 270 GYPT 273



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 348 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 376


>gi|332229967|ref|XP_003264157.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 2
           [Nomascus leucogenys]
          Length = 658

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 379 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 437

Query: 224 GIWT 227
           G  T
Sbjct: 438 GYPT 441



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 516 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 544


>gi|332229965|ref|XP_003264156.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 1
           [Nomascus leucogenys]
          Length = 672

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|327288450|ref|XP_003228939.1| PREDICTED: spermatid perinuclear RNA-binding protein-like [Anolis
           carolinensis]
          Length = 694

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 412 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 470

Query: 224 GIWT 227
           G  T
Sbjct: 471 GYPT 474



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 549 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 577


>gi|326930520|ref|XP_003211394.1| PREDICTED: spermatid perinuclear RNA-binding protein-like
           [Meleagris gallopavo]
          Length = 672

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 392 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 450

Query: 224 GIWT 227
           G  T
Sbjct: 451 GYPT 454



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 529 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 557


>gi|301769247|ref|XP_002920042.1| PREDICTED: spermatid perinuclear RNA-binding protein-like
           [Ailuropoda melanoleuca]
          Length = 672

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|297270177|ref|XP_001084509.2| PREDICTED: spermatid perinuclear RNA-binding protein isoform 4
           [Macaca mulatta]
          Length = 658

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 379 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 437

Query: 224 GIWT 227
           G  T
Sbjct: 438 GYPT 441



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 516 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 544


>gi|291408373|ref|XP_002720487.1| PREDICTED: spermatid perinuclear RNA binding protein [Oryctolagus
           cuniculus]
          Length = 696

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 417 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 475

Query: 224 GIWT 227
           G  T
Sbjct: 476 GYPT 479



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 554 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 582


>gi|281350170|gb|EFB25754.1| hypothetical protein PANDA_008719 [Ailuropoda melanoleuca]
          Length = 672

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|224073921|ref|XP_002190904.1| PREDICTED: spermatid perinuclear RNA binding protein [Taeniopygia
           guttata]
          Length = 673

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 392 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 450

Query: 224 GIWT 227
           G  T
Sbjct: 451 GYPT 454



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|194225808|ref|XP_001500803.2| PREDICTED: spermatid perinuclear RNA binding protein [Equus
           caballus]
          Length = 672

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|159164237|pdb|2DMY|A Chain A, Solution Structure Of Dsrm Domain In Spermatid Perinuclear
           Rna-Bind Protein
          Length = 97

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 23  MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 81

Query: 224 GIWT 227
           G  T
Sbjct: 82  GYPT 85


>gi|149047906|gb|EDM00522.1| spermatid perinuclear RNA binding protein, isoform CRA_b [Rattus
           norvegicus]
          Length = 648

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|132626573|ref|NP_445868.2| spermatid perinuclear RNA-binding protein [Rattus norvegicus]
 gi|149047905|gb|EDM00521.1| spermatid perinuclear RNA binding protein, isoform CRA_a [Rattus
           norvegicus]
          Length = 672

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|126294271|ref|XP_001371295.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 704

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 425 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 483

Query: 224 GIWT 227
           G  T
Sbjct: 484 GYPT 487



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 562 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 590


>gi|119607972|gb|EAW87566.1| spermatid perinuclear RNA binding protein, isoform CRA_d [Homo
           sapiens]
          Length = 648

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|119607969|gb|EAW87563.1| spermatid perinuclear RNA binding protein, isoform CRA_a [Homo
           sapiens]
          Length = 490

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 211 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 269

Query: 224 GIWT 227
           G  T
Sbjct: 270 GYPT 273



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 348 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 376


>gi|114626618|ref|XP_001139454.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 615

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|114626620|ref|XP_520244.2| PREDICTED: hypothetical protein isoform 7 [Pan troglodytes]
          Length = 592

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|297270175|ref|XP_001084032.2| PREDICTED: spermatid perinuclear RNA-binding protein isoform 1
           [Macaca mulatta]
          Length = 672

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|71897299|ref|NP_001025851.1| spermatid perinuclear RNA-binding protein [Gallus gallus]
 gi|75571231|sp|Q5ZIL4|STRBP_CHICK RecName: Full=Spermatid perinuclear RNA-binding protein
 gi|53135487|emb|CAG32429.1| hypothetical protein RCJMB04_25e3 [Gallus gallus]
          Length = 672

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 392 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 450

Query: 224 GIWT 227
           G  T
Sbjct: 451 GYPT 454



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 529 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 557


>gi|38114853|gb|AAH02693.2| STRBP protein [Homo sapiens]
          Length = 615

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 336 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 394

Query: 224 GIWT 227
           G  T
Sbjct: 395 GYPT 398



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 473 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 501


>gi|114842377|ref|NP_033287.2| spermatid perinuclear RNA-binding protein [Mus musculus]
 gi|81879604|sp|Q91WM1|STRBP_MOUSE RecName: Full=Spermatid perinuclear RNA-binding protein
 gi|15928464|gb|AAH14710.1| Spermatid perinuclear RNA binding protein [Mus musculus]
 gi|123229640|emb|CAM21472.1| spermatid perinuclear RNA binding protein [Mus musculus]
 gi|148676766|gb|EDL08713.1| spermatid perinuclear RNA binding protein, isoform CRA_a [Mus
           musculus]
          Length = 672

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|13377630|gb|AAK20832.1|AF333337_1 spermatid perinuclear RNA-binding protein [Homo sapiens]
          Length = 673

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 394 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 452

Query: 224 GIWT 227
           G  T
Sbjct: 453 GYPT 456



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 531 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 559


>gi|81872622|sp|Q9JKU6|STRBP_RAT RecName: Full=Spermatid perinuclear RNA-binding protein; AltName:
           Full=74 kDa double-stranded RNA-binding protein;
           Short=p74
 gi|7329162|gb|AAF59924.1|AF226864_1 double-stranded RNA-binding protein p74 [Rattus norvegicus]
          Length = 671

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 47.2 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +G  HD RF + VE+ G    +G   +K+ A++V     L++ 
Sbjct: 531 ISETGGSHDKRFVMEVEVDGQKF-RGAGPNKKVAKEV--QRTLEKL 573


>gi|80478568|gb|AAI08732.1| STRBP protein [Homo sapiens]
          Length = 589

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|115496278|ref|NP_001069207.1| spermatid perinuclear RNA-binding protein [Bos taurus]
 gi|122132446|sp|Q08E27|STRBP_BOVIN RecName: Full=Spermatid perinuclear RNA-binding protein
 gi|115305044|gb|AAI23454.1| Spermatid perinuclear RNA binding protein [Bos taurus]
 gi|296482172|gb|DAA24287.1| spermatid perinuclear RNA-binding protein [Bos taurus]
          Length = 672

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|73968135|ref|XP_863842.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 8 [Canis familiaris]
          Length = 640

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 361 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 419

Query: 224 GIWT 227
           G  T
Sbjct: 420 GYPT 423



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 498 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 526


>gi|73968127|ref|XP_863753.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 4 [Canis familiaris]
          Length = 678

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 398 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 456

Query: 224 GIWT 227
           G  T
Sbjct: 457 GYPT 460



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 536 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 564


>gi|73968122|ref|XP_863686.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 2 [Canis familiaris]
          Length = 648

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|73968137|ref|XP_863863.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 9 [Canis familiaris]
          Length = 490

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 211 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 269

Query: 224 GIWT 227
           G  T
Sbjct: 270 GYPT 273



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 348 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 376


>gi|73968139|ref|XP_863888.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 10 [Canis familiaris]
          Length = 676

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 397 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 455

Query: 224 GIWT 227
           G  T
Sbjct: 456 GYPT 459



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 534 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 562


>gi|73968125|ref|XP_863730.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 3 [Canis familiaris]
          Length = 678

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 404 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 462

Query: 224 GIWT 227
           G  T
Sbjct: 463 GYPT 466



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 536 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 564


>gi|73968129|ref|XP_863778.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 5 [Canis familiaris]
          Length = 615

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|57092117|ref|XP_537853.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 1 [Canis familiaris]
          Length = 672

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|197099302|ref|NP_001126458.1| spermatid perinuclear RNA-binding protein [Pongo abelii]
 gi|75054828|sp|Q5R6Y5|STRBP_PONAB RecName: Full=Spermatid perinuclear RNA-binding protein
 gi|55731530|emb|CAH92475.1| hypothetical protein [Pongo abelii]
          Length = 672

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|673454|emb|CAA59167.1| spermatid perinuclear RNA binding protein [Mus musculus]
 gi|148676767|gb|EDL08714.1| spermatid perinuclear RNA binding protein, isoform CRA_b [Mus
           musculus]
          Length = 648

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|283806705|ref|NP_001164608.1| spermatid perinuclear RNA-binding protein isoform 2 [Homo sapiens]
 gi|114626610|ref|XP_001139946.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 5 [Pan
           troglodytes]
 gi|296190783|ref|XP_002743339.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 2
           [Callithrix jacchus]
 gi|12053237|emb|CAB66800.1| hypothetical protein [Homo sapiens]
 gi|55664365|emb|CAH70299.1| spermatid perinuclear RNA binding protein [Homo sapiens]
 gi|119607971|gb|EAW87565.1| spermatid perinuclear RNA binding protein, isoform CRA_c [Homo
           sapiens]
          Length = 658

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 379 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 437

Query: 224 GIWT 227
           G  T
Sbjct: 438 GYPT 441



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 516 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 544


>gi|7023885|dbj|BAA92120.1| spermatid perinuclear RNA-binding protein. [Homo sapiens]
          Length = 490

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 211 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 269

Query: 224 GIWT 227
           G  T
Sbjct: 270 GYPT 273



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 348 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 376


>gi|21361745|ref|NP_060857.2| spermatid perinuclear RNA-binding protein isoform 1 [Homo sapiens]
 gi|114626608|ref|XP_001140028.1| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes]
 gi|296190781|ref|XP_002743338.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 1
           [Callithrix jacchus]
 gi|332832824|ref|XP_003312319.1| PREDICTED: spermatid perinuclear RNA-binding protein [Pan
           troglodytes]
 gi|74752134|sp|Q96SI9|STRBP_HUMAN RecName: Full=Spermatid perinuclear RNA-binding protein
 gi|14042893|dbj|BAB55434.1| unnamed protein product [Homo sapiens]
 gi|17389385|gb|AAH17732.1| Spermatid perinuclear RNA binding protein [Homo sapiens]
 gi|55664366|emb|CAH70300.1| spermatid perinuclear RNA binding protein [Homo sapiens]
 gi|117644880|emb|CAL37906.1| hypothetical protein [synthetic construct]
 gi|119607970|gb|EAW87564.1| spermatid perinuclear RNA binding protein, isoform CRA_b [Homo
           sapiens]
 gi|168278000|dbj|BAG10978.1| spermatid perinuclear RNA-binding protein [synthetic construct]
          Length = 672

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 451

Query: 224 GIWT 227
           G  T
Sbjct: 452 GYPT 455



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 530 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 558


>gi|10436629|dbj|BAB14873.1| unnamed protein product [Homo sapiens]
          Length = 405

 Score = 55.7 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 126 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 184

Query: 224 GIWT 227
           G  T
Sbjct: 185 GYPT 188



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 263 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 291


>gi|242013589|ref|XP_002427485.1| mitochondrial 50S ribosomal protein L44, putative [Pediculus
           humanus corporis]
 gi|212511880|gb|EEB14747.1| mitochondrial 50S ribosomal protein L44, putative [Pediculus
           humanus corporis]
          Length = 361

 Score = 55.3 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 75/228 (32%), Gaps = 19/228 (8%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQ---------------ESYERLEFLGDRILGLLI 55
           KR+   F    LL +A TH S     +               +S E L   G++I+   +
Sbjct: 86  KRLKENFT-PELLVRAFTHRSYVSEQETKLQEVGVSNVDISMKSNEELVSKGEKIISDFV 144

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
              +   +       +    + L+S +    V++ L     I  +           ++  
Sbjct: 145 PKFVSYFYPRFPMEGIQSIHDYLLSNDVLGHVSKNLGTTDLILSAEY--PVETETYSTTL 202

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
             ++ +L     L+        F+    + + +      +D    + E  +       E 
Sbjct: 203 KAIIGALYECSGLNRANLFVRDFIITQLEGKDIHEFLQIKDPLKIVNEILNRDNREPCEP 262

Query: 176 KVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           ++  +SG       + V +  +          +   A ++AA++ L+R
Sbjct: 263 RIICKSGVNTILANYHVGLYSNKELVGHCSGETIDTAIEMAASDALRR 310


>gi|322798626|gb|EFZ20230.1| hypothetical protein SINV_08208 [Solenopsis invicta]
          Length = 375

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                      YK  ++ G DH   FT+ V + G   A G    K++A+Q AA ++L   
Sbjct: 123 QQEKINPKEIHYKDLYQDGQDHQKIFTIEVIL-GSKKATGTGPCKKSAKQEAARKLLMSL 181

Query: 224 G 224
            
Sbjct: 182 N 182



 Score = 44.5 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            ++   F   V       A G   SK+ A+  AA  +L   
Sbjct: 32  NENRTLFVCNVS-YNKFYASGEGNSKKEAKHTAAENMLSLL 71


>gi|281414106|ref|ZP_06245848.1| RNAse III [Micrococcus luteus NCTC 2665]
          Length = 74

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 23 LEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
          LE+ALTH S ++      + ERLEFLGD +LG +++  +F  +    EG+L+ R  ++VS
Sbjct: 8  LERALTHRSFAYEQGGLPTNERLEFLGDSVLGYVVTDHIFTVYPDLAEGDLARRRAAVVS 67

Query: 81 AET 83
             
Sbjct: 68 TRA 70


>gi|242014081|ref|XP_002427726.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212512167|gb|EEB14988.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 865

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
           +   + L E    +   TP++++ F  GPDH   F   V ++G+     +   +K+ A+ 
Sbjct: 789 KHPVSLLNELCSRRKYGTPQFELCFECGPDHKKNFLFKVIVNGVEYTPTIASPNKKQAKV 848

Query: 214 VAAAEVLKREGIW 226
            AAA  L+  GI 
Sbjct: 849 EAAAVCLRALGII 861


>gi|321476628|gb|EFX87588.1| hypothetical protein DAPPUDRAFT_221551 [Daphnia pulex]
          Length = 200

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    L EW   +    P+Y+V   SGP H   + +  ++      +G   SK+AA+ VA
Sbjct: 129 NPAGVLTEWCLTRLSNLPDYRVVRTSGPSHSKTYFMTCKLGDRV-TEGEGKSKKAAKNVA 187

Query: 216 AAEVLKRE 223
           A ++L+  
Sbjct: 188 AGKMLQIL 195



 Score = 38.8 bits (88), Expect = 0.57,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEV 219
             E           Y +    G  H   F + + +  L  + +G+  +K  A+  AA ++
Sbjct: 21  FHELCTKFDFGVAMYNLVAEQGEPHSRTFLMNLTVDMLGISVEGIGLTKMQAKHDAAYKM 80

Query: 220 LKRE 223
           + + 
Sbjct: 81  MFQI 84


>gi|189233967|ref|XP_001810552.1| PREDICTED: similar to staufen [Tribolium castaneum]
 gi|270015116|gb|EFA11564.1| staufen [Tribolium castaneum]
          Length = 724

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 1/125 (0%)

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
                  K+    +   +         A + D      G          +      +   
Sbjct: 48  IPQQPQPKNNVQQVYHYENTASSETEQAQHNDTQQHQTGPNTSTSSAPPSTTLANIKEKT 107

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         +  +Y++T  SGP H   FTV +++      +    S + A+  AAA
Sbjct: 108 PMCLVNELARYNKIQHQYQLTEESGPAHKKVFTVTLKLGNEEY-KSEGPSIKKAQHSAAA 166

Query: 218 EVLKR 222
           + L +
Sbjct: 167 QSLAK 171



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   A     P Y V    G      F +   ++G +   G+  +K+ A++ A
Sbjct: 456 NPISRLIQIQQANKEREPVYTVLEERGAPRRREFVIEASVNGHS-CTGVGPNKKIAKRNA 514

Query: 216 AAEVLKREG 224
           A  +L + G
Sbjct: 515 AEALLNQLG 523



 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP H   F     + G   A+G    K+ +++ AA ++L+  
Sbjct: 367 LSEKGPPHMKVFVTQCRV-GNFVAEGEGNGKKISKKRAAEKMLEEL 411


>gi|255080010|ref|XP_002503585.1| ribonuclease III/double strand RNA binding domain-containing
           protein [Micromonas sp. RCC299]
 gi|226518852|gb|ACO64843.1| ribonuclease III/double strand RNA binding domain-containing
           protein [Micromonas sp. RCC299]
          Length = 352

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 70/189 (37%), Gaps = 7/189 (3%)

Query: 41  ERLEFLGDRILGLLISTLLFNH----FDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
           ER+ F GD+ L L ++  L        ++   GE+SV  +S  S    +++  +L     
Sbjct: 107 ERMAFFGDKYLNLSVAKALERQLLDGDETMSIGEMSVLCSSARSNMLFAKLLPKLLTPDM 166

Query: 97  IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
           +    +         +          +      G    A   +  +  + A K      +
Sbjct: 167 VAAVPEEAIMEGRQHSVGTLLESCVYLVYTTGGGEGAAAVDELGTFLLEEAEKQAADVHN 226

Query: 157 AKTELQEWAHA--KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            K  L E         V  + K+   SG  H  RF   VE+ G   A+ +  +KR AE+ 
Sbjct: 227 YKGALYELIAKGVDGYVVTKDKMGEASGGAHPQRFETEVELDG-VRARFLARNKREAERG 285

Query: 215 AAAEVLKRE 223
           AA  VL++ 
Sbjct: 286 AAKRVLEKL 294


>gi|29292938|dbj|BAC66440.1| double stranded RNA-dependent protein kinase [Bos taurus]
          Length = 533

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            VT E   +   GP+    F  + +I       G+  +K+ A+Q+AA    ++ 
Sbjct: 115 CVTYEECKSKGDGPEG---FHYICKIGQEEYGSGVGSTKQEAKQLAAKLAYEKI 165



 Score = 40.3 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 17/45 (37%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                K GV   Y    ++GP H+ RFT  V I      +    S
Sbjct: 15  NKYQQKNGVEVRYCELAKTGPPHNFRFTYQVIIDDKEYPKAEGRS 59


>gi|126321042|ref|XP_001367821.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 569

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G A A G+  SK+ A++ 
Sbjct: 305 MNPVSCLAQILQAKKEKEPDYALLSDRGKSRRREFLMQVKV-GSAVATGIGLSKKIAKRN 363

Query: 215 AAAEVLKREGIWT 227
           AA  +L   G  T
Sbjct: 364 AAEAMLLHLGYKT 376



 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            +   ++V   SGP H   F   V + G   A+G   SK+ +++ AA+ +L+   
Sbjct: 219 NMPVTFEVIKESGPPHMKNFVTRVSV-GEFSAEGEGNSKKLSKKRAASSILQELK 272



 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         V P+YK+    GP H   F+V + +      Q    S +
Sbjct: 1   MANPKEKTPMCLVNELARFNRVQPQYKLLNERGPAHCKMFSVQLTLGEQTW-QSEGSSIK 59

Query: 210 AAEQVAAAEVLK 221
            A+  AA + L+
Sbjct: 60  KAQHAAANKALR 71


>gi|24620514|gb|AAN61051.1| ADR-1E [Caenorhabditis elegans]
          Length = 893

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 11/136 (8%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +      +     + +         +  A        E    +                +
Sbjct: 396 YFMAKCTIIDHNENDLKFEVKSSSLASKAMAKDWVAQETLKNYFAIDPSSCVKTDAVSSQ 455

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP--------RFTVVVEISGLAPAQGMDCS 207
                L    +     T +         D+ P         F     I       G+  S
Sbjct: 456 GPCALLHAMLNK---QTKQKCKIAYEFKDNVPPVAGQATTTFYCECVIDETDRYIGVGRS 512

Query: 208 KRAAEQVAAAEVLKRE 223
           K+ A+  AA + LK+ 
Sbjct: 513 KKLAKSEAAMQALKKL 528


>gi|332271595|gb|AEE36483.1| TAR RNA-binding protein isoform 3 [Marsupenaeus japonicus]
          Length = 296

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE   A+    P Y++T   G  H+  F++   I       G   SK+ A++ A
Sbjct: 129 NPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKLAKRQA 187

Query: 216 AAEV 219
           A ++
Sbjct: 188 AYKM 191



 Score = 37.6 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 11/28 (39%)

Query: 200 PAQGMDCSKRAAEQVAAAEVLKREGIWT 227
              G   + + A+  AA   L+   I T
Sbjct: 267 VCYGTGANVKEAQSAAAHNALEYLKIMT 294


>gi|332271593|gb|AEE36482.1| TAR RNA-binding protein isoform 2 [Marsupenaeus japonicus]
          Length = 323

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE   A+    P Y++T   G  H+  F++   I       G   SK+ A++ A
Sbjct: 129 NPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKLAKRQA 187

Query: 216 AAEV 219
           A ++
Sbjct: 188 AYKM 191


>gi|332271591|gb|AEE36481.1| TAR RNA-binding protein isoform 1 [Marsupenaeus japonicus]
          Length = 343

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE   A+    P Y++T   G  H+  F++   I       G   SK+ A++ A
Sbjct: 129 NPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKLAKRQA 187

Query: 216 AAEV 219
           A ++
Sbjct: 188 AYKM 191



 Score = 37.6 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 11/28 (39%)

Query: 200 PAQGMDCSKRAAEQVAAAEVLKREGIWT 227
              G   + + A+  AA   L+   I T
Sbjct: 314 VCYGTGANVKEAQSAAAHNALEYLKIMT 341


>gi|328905029|gb|AEB54790.1| TRBP1 [Litopenaeus vannamei]
          Length = 343

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE   A+    P Y++T   G  H+  F++   I       G   SK+ A++ A
Sbjct: 129 NPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKLAKRQA 187

Query: 216 AAEV 219
           A ++
Sbjct: 188 AYKM 191


>gi|195971116|gb|ACG60900.1| TAR RNA-binding protein 2 [Fenneropenaeus chinensis]
          Length = 343

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE   A+    P Y++T   G  H+  F++   I       G   SK+ A++ A
Sbjct: 129 NPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKLAKRQA 187

Query: 216 AAEV 219
           A ++
Sbjct: 188 AYKM 191


>gi|221328530|gb|ACM17808.1| TAR RNA-binding protein 2 isoform 3 [Fenneropenaeus chinensis]
          Length = 296

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE   A+    P Y++T   G  H+  F++   I       G   SK+ A++ A
Sbjct: 129 NPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKLAKRQA 187

Query: 216 AAEV 219
           A ++
Sbjct: 188 AYKM 191


>gi|221328528|gb|ACM17807.1| TAR RNA-binding protein 2 isoform 2 [Fenneropenaeus chinensis]
          Length = 323

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE   A+    P Y++T   G  H+  F++   I       G   SK+ A++ A
Sbjct: 129 NPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKLAKRQA 187

Query: 216 AAEV 219
           A ++
Sbjct: 188 AYKM 191


>gi|117935051|ref|NP_835210.2| interferon-induced, double-stranded RNA-activated protein kinase
           [Bos taurus]
 gi|117306699|gb|AAI26647.1| Eukaryotic translation initiation factor 2-alpha kinase 2 [Bos
           taurus]
 gi|296482562|gb|DAA24677.1| protein kinase, interferon-inducible double stranded RNA dependent
           [Bos taurus]
          Length = 533

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            VT E   +   GP+    F  + +I       G+  +K+ A+Q+AA    ++ 
Sbjct: 115 CVTYEECKSKGDGPEG---FHYICKIGQEEYGSGVGSTKQEAKQLAAKLAYEKI 165



 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 17/45 (37%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                K GV   Y    ++GP H+ RFT  V I      +    S
Sbjct: 15  NKYQQKNGVEVRYCELAKTGPPHNFRFTYQVIIDDKEYPKAEGRS 59


>gi|170037804|ref|XP_001846745.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167881149|gb|EDS44532.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 896

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQ 213
           +   + L E+A  +    P Y +   SGP H   F   V ++GL     +  + K+ A+ 
Sbjct: 822 KHPVSILGEYASKRKWNPPRYDLVHESGPGHAKNFVFKVIVNGLEYQPAISNNTKKDAKA 881

Query: 214 VAAAEVLKREGIW 226
            AA   L++ GI 
Sbjct: 882 TAARFCLQQLGIL 894


>gi|170104597|ref|XP_001883512.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164641576|gb|EDR05836.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1046

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           P +    RSGP H   +TVVV ++ +   +G   SK  A++ AA   L
Sbjct: 753 PPHYEVARSGPAHAEDWTVVVTVNDIEYGRGTASSKNNAKRAAAEIAL 800


>gi|24620504|gb|AAN61050.1| ADR-1D [Caenorhabditis elegans]
          Length = 912

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 11/136 (8%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +      +     + +         +  A        E    +                +
Sbjct: 396 YFMAKCTIIDHNENDLKFEVKSSSLASKAMAKDWVAQETLKNYFAIDPSSCVKTDAVSSQ 455

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP--------RFTVVVEISGLAPAQGMDCS 207
                L    +     T +         D+ P         F     I       G+  S
Sbjct: 456 GPCALLHAMLNK---QTKQKCKIAYEFKDNVPPVAGQATTTFYCECVIDETDRYIGVGRS 512

Query: 208 KRAAEQVAAAEVLKRE 223
           K+ A+  AA + LK+ 
Sbjct: 513 KKLAKSEAAMQALKKL 528


>gi|158290824|ref|XP_312385.4| AGAP002554-PA [Anopheles gambiae str. PEST]
 gi|157018083|gb|EAA08039.4| AGAP002554-PA [Anopheles gambiae str. PEST]
          Length = 648

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 35/145 (24%), Gaps = 1/145 (0%)

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           V         + + +  F   ++  +                     L     + +    
Sbjct: 298 VEYCKKLFRFKTIRVLRFKSWAARRKFTKHRKHIKNLQRPTLPDGTKLITFPMLNIEDEQ 357

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
            + + + +          +   +                         P ++  V I+ L
Sbjct: 358 GNPHARPKKEWIMNPNGKSYVCILHEYVQHALRKQPTYEFKELENAATP-YSATVTINEL 416

Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223
               G   SK+ A+  AA E L+  
Sbjct: 417 KYGTGYGTSKKQAKSEAARETLEIL 441


>gi|312095371|ref|XP_003148333.1| hypothetical protein LOAG_12772 [Loa loa]
 gi|307756502|gb|EFO15736.1| hypothetical protein LOAG_12772 [Loa loa]
          Length = 465

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 32/80 (40%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +       + +  + L +   A+    P++++    G      F + V        +G+
Sbjct: 255 MKMNPEYGHQINPVSRLMQVMQARKQNEPKFQLVAERGQSRYKEFVMEVVCDDGLRCEGI 314

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  VL R G
Sbjct: 315 GPNKKLAKRAAAEAVLARIG 334



 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEV 219
                +  +  E+ V    GP HD  + +  ++     +  A G   SK+ A+Q A + +
Sbjct: 156 HECALQMRMNVEFLVLKEEGPAHDRHYLLRCKLISAEQIISADGEGSSKKIAKQNACSLM 215

Query: 220 LKRE 223
           L + 
Sbjct: 216 LTKL 219


>gi|32563647|ref|NP_871801.1| Adenosine Deaminase that acts on RNA family member (adr-1)
           [Caenorhabditis elegans]
 gi|27753106|emb|CAD60418.1| C. elegans protein H15N14.1e, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 893

 Score = 55.3 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 11/136 (8%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +      +     + +         +  A        E    +                +
Sbjct: 396 YFMAKCTIIDHNENDLKFEVKSSSLASKAMAKDWVAQETLKNYFAIDPSSCVKTDAVSSQ 455

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP--------RFTVVVEISGLAPAQGMDCS 207
                L    +     T +         D+ P         F     I       G+  S
Sbjct: 456 GPCALLHAMLNK---QTKQKCKIAYEFKDNVPPVAGQATTTFYCECVIDETDRYIGVGRS 512

Query: 208 KRAAEQVAAAEVLKRE 223
           K+ A+  AA + LK+ 
Sbjct: 513 KKLAKSEAAMQALKKL 528


>gi|170037189|ref|XP_001846442.1| tar RNA binding protein [Culex quinquefasciatus]
 gi|167880196|gb|EDS43579.1| tar RNA binding protein [Culex quinquefasciatus]
          Length = 390

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE   A+    P Y+     G  H+ +FT+   +       G   SK+ A++ A
Sbjct: 173 NPIGWLQEMCMARRWPPPTYETEMEVGLPHERQFTIACAVL-KYREVGKGKSKKIAKRQA 231

Query: 216 AAEVLKRE 223
           A  + +R 
Sbjct: 232 AQRMWQRL 239


>gi|157119564|ref|XP_001659426.1| tar RNA binding protein (trbp) [Aedes aegypti]
 gi|108875294|gb|EAT39519.1| tar RNA binding protein (trbp) [Aedes aegypti]
          Length = 329

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE   A+    P Y+     G  H+ +FT+   +       G   SK+ A++ A
Sbjct: 160 NPIGWLQEMCMARRWPPPTYETEMEVGLPHERQFTIACAVL-KYREVGKGKSKKIAKRQA 218

Query: 216 AAEVLKRE 223
           A  + +R 
Sbjct: 219 AQRMWQRL 226



 Score = 37.6 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 188 RFTVVVEISGLAPA--QGMDCSKRAAEQVAAAEVLKREGIWT 227
           RF  +V++S L  A   G   + + A+  AA   L+   I T
Sbjct: 286 RFQCLVQLSTLPVAVCHGSGSTAKEAQTAAARNSLEYLKIMT 327


>gi|32563645|ref|NP_492154.2| Adenosine Deaminase that acts on RNA family member (adr-1)
           [Caenorhabditis elegans]
 gi|27753105|emb|CAD60417.1| C. elegans protein H15N14.1d, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 912

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 11/136 (8%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +      +     + +         +  A        E    +                +
Sbjct: 396 YFMAKCTIIDHNENDLKFEVKSSSLASKAMAKDWVAQETLKNYFAIDPSSCVKTDAVSSQ 455

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP--------RFTVVVEISGLAPAQGMDCS 207
                L    +     T +         D+ P         F     I       G+  S
Sbjct: 456 GPCALLHAMLNK---QTKQKCKIAYEFKDNVPPVAGQATTTFYCECVIDETDRYIGVGRS 512

Query: 208 KRAAEQVAAAEVLKRE 223
           K+ A+  AA + LK+ 
Sbjct: 513 KKLAKSEAAMQALKKL 528


>gi|32563643|ref|NP_492153.2| Adenosine Deaminase that acts on RNA family member (adr-1)
           [Caenorhabditis elegans]
 gi|25004982|emb|CAB09530.2| C. elegans protein H15N14.1c, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 964

 Score = 55.3 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 11/136 (8%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +      +     + +         +  A        E    +                +
Sbjct: 467 YFMAKCTIIDHNENDLKFEVKSSSLASKAMAKDWVAQETLKNYFAIDPSSCVKTDAVSSQ 526

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP--------RFTVVVEISGLAPAQGMDCS 207
                L    +     T +         D+ P         F     I       G+  S
Sbjct: 527 GPCALLHAMLNK---QTKQKCKIAYEFKDNVPPVAGQATTTFYCECVIDETDRYIGVGRS 583

Query: 208 KRAAEQVAAAEVLKRE 223
           K+ A+  AA + LK+ 
Sbjct: 584 KKLAKSEAAMQALKKL 599


>gi|312871873|ref|ZP_07731957.1| hypothetical protein HMPREF9219_0396 [Lactobacillus iners LEAF
           3008A-a]
 gi|311092595|gb|EFQ50955.1| hypothetical protein HMPREF9219_0396 [Lactobacillus iners LEAF
           3008A-a]
          Length = 35

 Score = 54.9 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           FTV + ++G   +QG+  SK+AAEQVAA+  LK  
Sbjct: 1   FTVQLIVAGENISQGIGRSKKAAEQVAASVALKNI 35


>gi|36963075|gb|AAQ87664.1| staufen [Mus musculus]
          Length = 436

 Score = 54.9 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP H       V + G    +G   SK+ +++ AA  VL++ 
Sbjct: 126 SGPPHMKNVVTRVPV-GEFVGEGEGKSKKISKKNAARAVLEQL 167



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 203 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 261

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 262 AAENMLEILG 271


>gi|7504924|pir||T23094 hypothetical protein H15N14.1a - Caenorhabditis elegans
          Length = 959

 Score = 54.9 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 11/136 (8%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +      +     + +         +  A        E    +                +
Sbjct: 462 YFMAKCTIIDHNENDLKFEVKSSSLASKAMAKDWVAQETLKNYFAIDPSSCVKTDAVSSQ 521

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP--------RFTVVVEISGLAPAQGMDCS 207
                L    +     T +         D+ P         F     I       G+  S
Sbjct: 522 GPCALLHAMLNK---QTKQKCKIAYEFKDNVPPVAGQATTTFYCECVIDETDRYIGVGRS 578

Query: 208 KRAAEQVAAAEVLKRE 223
           K+ A+  AA + LK+ 
Sbjct: 579 KKLAKSEAAMQALKKL 594


>gi|159163523|pdb|1X48|A Chain A, Solution Structure Of The Second Dsrm Domain In
           Interferon- Induced, Double-Stranded Rna-Activated
           Protein Kinase
          Length = 88

 Score = 54.9 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            RF    +I       G   +K+ A+Q+AA E  ++ 
Sbjct: 36  QRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKL 72


>gi|328710263|ref|XP_003244208.1| PREDICTED: hypothetical protein LOC100575225 [Acyrthosiphon pisum]
          Length = 407

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +G  H P FT + +   +  A G   SK+ A+Q AAA++ ++ 
Sbjct: 16  VAITGHAHKPIFTYMCQTHNMK-ALGEGKSKKEAKQNAAAQMCEKL 60


>gi|321456688|gb|EFX67789.1| hypothetical protein DAPPUDRAFT_261055 [Daphnia pulex]
          Length = 279

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            + +E  +GY F ++  L+  LTH S   +    E  +RLE LGD +LG L+  + +   
Sbjct: 74  LAVIETTLGYEFRHKENLKLPLTHISTNPNKVPSEDSDRLETLGDILLGTLVMAICYTTC 133

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
            +   GEL+   + +   +T + +A  + L + +  + + R 
Sbjct: 134 PTYGAGELTNLTSMITCNDTFAVLAVRMGLHAHLNHNMNKRN 175


>gi|193787146|dbj|BAG52352.1| unnamed protein product [Homo sapiens]
          Length = 365

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++     A+G 
Sbjct: 63  PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHT-AEGT 121

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 122 GTNKKVAKRNAAENMLEILG 141



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             F   V + G    +G   SK+ +++ AA  VL+   
Sbjct: 2   KNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEELK 38


>gi|195398117|ref|XP_002057671.1| GJ17975 [Drosophila virilis]
 gi|194141325|gb|EDW57744.1| GJ17975 [Drosophila virilis]
          Length = 481

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    +    P Y+     G  H+  FT+   I       G   SK+ A+++A
Sbjct: 266 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACTILNFRE-VGKGKSKKIAKRLA 324

Query: 216 AAEVLKRE 223
           A ++  R 
Sbjct: 325 AHKMWTRL 332



 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223
           TP Y++    G  H+P F   V          A G   SK+ A+  AA  ++ + 
Sbjct: 165 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 219


>gi|194382068|dbj|BAG58789.1| unnamed protein product [Homo sapiens]
          Length = 200

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
                K  K + +    LQE A       PEY ++   GP H   +T +  +       G
Sbjct: 1   MPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLE-SFMETG 59

Query: 204 MDCSKRAAEQVAAAEVLKR 222
              SK+ A++ AA + L +
Sbjct: 60  KGASKKQAKRNAAEKFLAK 78


>gi|13358446|ref|NP_078726.1| Ribonuclease III [Lymphocystis disease virus 1]
          Length = 251

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 69/211 (32%), Gaps = 12/211 (5%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVR 74
           ++ L  +A T +S+      +YE  E LGD +    +    +  F   +  +    ++  
Sbjct: 28  DKEL-IQAFTPASVDPII--NYESFEILGDGVAAYFLPMYFYKTFPQLQNAKGVKAIARL 84

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             +  S  + + +A+ L    +I+   +L+ D    +  +    + ++   L     +E 
Sbjct: 85  KINYASRRSFATIAKFLGFWPYIKKPKNLKCDQKKLLEDVFESFLGAVCLILDGHFNVEG 144

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVV 192
            G  V   + +    +     + K                   T   G      F     
Sbjct: 145 VGAAVCFNFLKNIFDTMTIEINYKALF---DPKTRLKELMDIYTAELGVLAYRHFNNKTD 201

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             I           +K+  EQ ++ +VL+  
Sbjct: 202 CYIGDKLMITVYGSNKKDREQDSSDKVLELL 232


>gi|297740221|emb|CBI30403.3| unnamed protein product [Vitis vinifera]
          Length = 853

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 23/71 (32%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                   +          + + +         D +F+V V  +G     GM  +++ A+
Sbjct: 668 NMMPPHLSIGVLQEIGRRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGKTRKDAQ 727

Query: 213 QVAAAEVLKRE 223
           Q AA   L   
Sbjct: 728 QQAAENALHSL 738


>gi|225440662|ref|XP_002274594.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 859

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 23/71 (32%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                   +          + + +         D +F+V V  +G     GM  +++ A+
Sbjct: 674 NMMPPHLSIGVLQEIGRRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGKTRKDAQ 733

Query: 213 QVAAAEVLKRE 223
           Q AA   L   
Sbjct: 734 QQAAENALHSL 744


>gi|327198659|emb|CCA61360.1| unnamed protein product [Diadromus pulchellus ascovirus 4a]
          Length = 257

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 70/216 (32%), Gaps = 12/216 (5%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSV 73
            N  +   A T  +  +  + +YE  E LGD  +   I + +   F   +       L+ 
Sbjct: 24  NNSKIFAAAFT--TADYDPKFNYEFFEQLGDLTINKFIVSYMSRRFPQLRNRNGVNVLAT 81

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
                 S    S ++ +  L   +R++ +   D    M S+  DV E+L  A+      +
Sbjct: 82  LRILYGSKNVLSGLSSKYGLDKLVRMTREESLDKTKSM-SVFEDVFEALFGAIEFVFDRD 140

Query: 134 VAGTFVDKYWKQRALKSG-----KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                   +  +           K   ++  + +   +              S  +    
Sbjct: 141 NFPGMGYVFCYRILTAMFDDLDVKIDYESLVDAKTRLNELKAEHKFSLTYRDSRDEASGM 200

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           F     I G+A   G   +K+ A+  A+   +   G
Sbjct: 201 FRSTAVIDGIAAGSGESNTKKGAQIEASQRAIDWLG 236


>gi|116204679|ref|XP_001228150.1| hypothetical protein CHGG_10223 [Chaetomium globosum CBS 148.51]
 gi|88176351|gb|EAQ83819.1| hypothetical protein CHGG_10223 [Chaetomium globosum CBS 148.51]
          Length = 327

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 73/234 (31%), Gaps = 30/234 (12%)

Query: 19  NRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           + +L   ALTHS +  +    SYE+LE++GD  L L+ S L+   F +   G  S     
Sbjct: 68  DSALETAALTHSGMRKNLSDPSYEQLEWIGDVYLELIASELISQTFPTLDPGRSSHYREM 127

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDV--------CSFMTSIQADVVESLIAALYLD 129
           LV   T  Q A    L       ++                      D+ E+ + A+   
Sbjct: 128 LVRNSTLGQFAVHYGLDKRANFPAEFGLGGRPNGTKASEKQRAKALGDIFEAYVGAIVRS 187

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG------- 182
                     +           +  R+ ++  +         T   ++    G       
Sbjct: 188 DPENGMRRAAEWLKMLWGPVLERQIREEESGSRVKDRDLNPKTQLEQMIGGPGVRIEYKD 247

Query: 183 ---------PDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222
                      +   F V   ++G     L    G    K+ A Q AA + ++ 
Sbjct: 248 LPSGGKKDRDTNQELFFVGCFLTGWGETSLQLGYGGALGKKEAGQKAAVKAMEN 301


>gi|307215189|gb|EFN89961.1| Interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Harpegnathos saltator]
          Length = 381

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
           K   +    LQE   ++    P+Y +    G  H+ +FT+V  I       G   SK+ A
Sbjct: 165 KVMNNPIGALQEMCMSRHWPPPKYTMEGEEGLPHERQFTIVCSIL-KYREVGQGKSKKVA 223

Query: 212 EQVAAAEVLKRE 223
           ++ AA ++ +  
Sbjct: 224 KRHAAHKMWQAL 235


>gi|294464151|gb|ADE77592.1| unknown [Picea sitchensis]
          Length = 505

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
                 +    K G+     VT RSGP H P F   V+ +G   A     SK+ AE+ AA
Sbjct: 345 MYKNFLQEFAQKEGIPFPEYVTDRSGPSHIPIFKSTVKFAGTTFAGKEANSKKQAEKNAA 404

Query: 217 AEV 219
              
Sbjct: 405 MAA 407



 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
            K  V+     + R GPDH PRF   V  +G A        + + A+  AA   L+  
Sbjct: 11  QKHCVSLPEYKSTREGPDHAPRFKATVTYNGRAFESPAFCKTAKEAQNAAAEFALEVL 68


>gi|321451683|gb|EFX63253.1| hypothetical protein DAPPUDRAFT_335709 [Daphnia pulex]
 gi|321454090|gb|EFX65276.1| hypothetical protein DAPPUDRAFT_333337 [Daphnia pulex]
          Length = 121

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 30/69 (43%)

Query: 6  YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             LE  I Y F N+ +L +A TH +  +    SYE+LE+LG+  L  +        ++ 
Sbjct: 20 LDQLEIIINYKFNNQLILLEASTHGTFHNPLCSSYEKLEYLGEIKLEQIDFEPTGIRYEQ 79

Query: 66 AKEGELSVR 74
                  R
Sbjct: 80 MSVQIKIPR 88


>gi|321451187|gb|EFX62921.1| hypothetical protein DAPPUDRAFT_336204 [Daphnia pulex]
          Length = 158

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 1/133 (0%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            E+  GY F +  +L +AL   + S  S  +  +RLE +GD +LG+L+S  LF       
Sbjct: 26  FEEIFGYKFKDEEMLHQALKRPTASLKSSVKKGDRLELVGDAVLGILVSIGLFRTITMYN 85

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
            G+L+   ++L   +    +  +  +  F+           +     Q          L 
Sbjct: 86  PGDLTRHRSALTCNDCFGVLTVKFGIHKFLLGLPPSLLHNVNEFAENQEKAAHPYSNMLG 145

Query: 128 LDGGIEVAGTFVD 140
             G      + + 
Sbjct: 146 KLGTSMSNSSTMH 158


>gi|313243028|emb|CBY39738.1| unnamed protein product [Oikopleura dioica]
          Length = 324

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 1/79 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
                      +    LQE   ++    P+Y +   +GP H   F +   +  L    G 
Sbjct: 116 NDQSMIHAGEINPIGTLQELVVSRGWRLPDYSLASEAGPSHKKEFIICCSVEKLKE-YGS 174

Query: 205 DCSKRAAEQVAAAEVLKRE 223
             SK+ A++ AA  +L R 
Sbjct: 175 GSSKKVAKRNAAGAMLSRM 193



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            TP Y +    G  H P F     +  L   +G   SK++A+  AA  VL +  
Sbjct: 45  KTPRYDLLTMEGRAHQPSFVFRCVVGDLT-GEGHGTSKKSAKHQAAENVLAQLK 97


>gi|313229252|emb|CBY23838.1| unnamed protein product [Oikopleura dioica]
          Length = 343

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 1/79 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
                      +    LQE   ++    P+Y +   +GP H   F +   +  L    G 
Sbjct: 135 NDQSMIHAGEINPIGTLQELVVSRGWRLPDYSLASEAGPSHKKEFIICCSVEKLKE-YGS 193

Query: 205 DCSKRAAEQVAAAEVLKRE 223
             SK+ A++ AA  +L R 
Sbjct: 194 GSSKKVAKRNAAGAMLSRM 212



 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            TP Y +    G  H P F     +  L   +G   SK++A+  AA  VL +  
Sbjct: 64  KTPRYDLLTMEGRAHQPSFVFRCVVGDLT-GEGHGTSKKSAKHQAAENVLAQLK 116


>gi|195153156|ref|XP_002017495.1| GL22329 [Drosophila persimilis]
 gi|194112552|gb|EDW34595.1| GL22329 [Drosophila persimilis]
          Length = 854

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQ 213
           +     L E         P+Y +   SGP H   F   VEI+G +        +K+ A+ 
Sbjct: 779 KHPVCVLNELTSKNRWTPPQYILQQESGPSHIRSFLFSVEINGQSYTPDRPCNNKKEAKL 838

Query: 214 VAAAEVLKREGIW 226
            AA   L+  GI 
Sbjct: 839 NAAKLCLESLGIL 851


>gi|125777342|ref|XP_001359575.1| GA20947 [Drosophila pseudoobscura pseudoobscura]
 gi|54639322|gb|EAL28724.1| GA20947 [Drosophila pseudoobscura pseudoobscura]
          Length = 851

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQ 213
           +     L E         P+Y +   SGP H   F   VEI+G +        +K+ A+ 
Sbjct: 776 KHPVCVLNELTSKNRWTPPQYILQQESGPSHIRSFLFSVEINGQSYTPDRPCNNKKEAKL 835

Query: 214 VAAAEVLKREGIW 226
            AA   L+  GI 
Sbjct: 836 NAAKLCLESLGIL 848


>gi|289183784|ref|YP_003457325.1| dsRNA-binding interferon resistance protein [Pseudocowpox virus]
 gi|288804256|gb|ADC53921.1| dsRNA-binding interferon resistance protein [Pseudocowpox virus]
          Length = 180

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                T E+  T   G DH P FT  + +SG   A     SK+ A   A A  L
Sbjct: 116 MITHRTLEFCETRSGGQDHCPNFTCTIVVSGKVIATATGTSKKLARHAACATAL 169


>gi|255944467|ref|XP_002563001.1| Pc20g04580 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587736|emb|CAP85787.1| Pc20g04580 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 151

 Score = 54.9 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 5/98 (5%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LE  IGY F +RSLLE+AL     +    E  ERL  LGD++L L++    +   ++ 
Sbjct: 3   AELESLIGYQFHDRSLLEEAL---EEAGPQTEGNERLALLGDKVLSLMLLHRWYMEGNTT 59

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
           ++G  +         +     AR LD   F+    D++
Sbjct: 60  EQG--TNLLQIYAGNKHLISRARALDFPKFVIQRLDIK 95


>gi|302782383|ref|XP_002972965.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
 gi|302823467|ref|XP_002993386.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
 gi|300138817|gb|EFJ05571.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
 gi|300159566|gb|EFJ26186.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
          Length = 386

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L +    +  V      T RSGP H P FT VVE++G+        +K+ AE+ AA 
Sbjct: 88  FKNLLQETAQRANVPLPTYTTTRSGPGHLPVFTCVVEVAGMNFTGDAGKTKKQAEKNAAM 147

Query: 218 EVLKREG 224
                  
Sbjct: 148 AAWATLK 154


>gi|166157977|ref|NP_001107398.1| spermatid perinuclear RNA binding protein [Xenopus (Silurana)
           tropicalis]
 gi|163916317|gb|AAI57348.1| LOC100135229 protein [Xenopus (Silurana) tropicalis]
          Length = 698

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 1/101 (0%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           + DG  +            R +   K     +         +     +YK+  +SGP H 
Sbjct: 357 FDDGSCDEKDPNKKMKRNLRKVLDSKVIDSNQPMNALMRLNQIRPGLQYKLLSQSGPVHA 416

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           P FT+ V++ G    +    SK+ A+   A +VL+  G  T
Sbjct: 417 PVFTMSVDVDGTTH-EASGPSKKTAKLHVAVKVLQAMGYPT 456



 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              SG  HD RF + VE+      +G   +K+
Sbjct: 530 ISESGGSHDKRFVMEVEVDAQKF-RGAGPNKK 560


>gi|156369805|ref|XP_001628164.1| predicted protein [Nematostella vectensis]
 gi|156215134|gb|EDO36101.1| predicted protein [Nematostella vectensis]
          Length = 474

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 68/225 (30%), Gaps = 20/225 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI------SHSYQESYERLEFLGDRILGLLISTLL 59
                 R+   F +  LL  ALTH              E   +L  LG  +    I+  L
Sbjct: 88  LFAFRNRLSLVFEDERLLRAALTHELCEEDLVKDKEKIEENSKLALLGHNLTSQYITEYL 147

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              + +     +    N L + ET  +VA    L   IR   DL          +  + V
Sbjct: 148 CFKYPNLPSEGVRQLHNFLTNRETLVKVADLTALPELIRTKHDLDSLKKEKHVEVTKEDV 207

Query: 120 E---------SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
                     ++          +    F+      + L       + +  L+    ++  
Sbjct: 208 ISDAFLALIGAIYLDQGSSEANKFVRDFLITQLYTQELNQVLQFENPEALLESMVLSEGH 267

Query: 171 VTPEYKVTFRSGPD-HDPRFTVVVEISGLAPAQGMDCS----KRA 210
             PE ++T +SG   H P + V +        +    +    KR 
Sbjct: 268 TKPEARITRQSGKATHLPVYVVGLFCGEELIGEAAGYNLVNAKRE 312


>gi|24620493|gb|AAN61049.1| ADR-1C [Caenorhabditis elegans]
          Length = 964

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 11/136 (8%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +      +     + +         +  A        E    +                +
Sbjct: 467 YFMAKYTIIDHNENDLKFEVKSSSLASKAMAKDWVAQETLKNYFAIDPSSCVKTDAVSSQ 526

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP--------RFTVVVEISGLAPAQGMDCS 207
                L    +     T +         D+ P         F     I       G+  S
Sbjct: 527 GPCALLHAMLNK---QTKQKCKIAYEFKDNVPPVAGQATTTFYCECVIDETDRYIGVGRS 583

Query: 208 KRAAEQVAAAEVLKRE 223
           K+ A+  AA + LK+ 
Sbjct: 584 KKLAKSEAAMQALKKL 599


>gi|296044644|gb|ADG85736.1| type 2 double stranded RNA activated protein kinase [Gadus morhua]
          Length = 624

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           RFT  V ++G    +G+  +K+ A Q AA   L+
Sbjct: 5   RFTQRVILNGKPYPEGVGKNKKEARQNAAKHALE 38



 Score = 43.0 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 2/116 (1%)

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
             +   + Q     +L + L  D        +  +   +   +    + +    L E + 
Sbjct: 22  GKNKKEARQNAAKHALESVLETDSDHSHVSGWSMRDATEPINQVRLTQPNYTCWLNEHSQ 81

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K       + T      H  +      + G     G   +K+ A++ AA  V ++
Sbjct: 82  KKRVCIRALESTAME-LGHTKQ-CCKFVLDGTEYPSGSGRTKKEAKEDAARLVYEK 135


>gi|26347661|dbj|BAC37479.1| unnamed protein product [Mus musculus]
          Length = 300

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  
Sbjct: 21  MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 79

Query: 224 GIWT 227
           G  T
Sbjct: 80  GCPT 83



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 158 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 186


>gi|67925688|ref|ZP_00519002.1| Ribonuclease III [Crocosphaera watsonii WH 8501]
 gi|67852471|gb|EAM47916.1| Ribonuclease III [Crocosphaera watsonii WH 8501]
          Length = 328

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 67/143 (46%), Gaps = 5/143 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFN 61
             S ++++I + F N  LL  +L+  S     +      +RLE LG+ +L L+I   L++
Sbjct: 4   NSSLVQEKISFNFKNTDLLFLSLSDPSYGKQINQPDSDNQRLESLGENLLALIIIDYLYH 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCS-FMTSIQADVV 119
           HF      +++   + L+  E  + +   L L   +  +  +  +       T+     +
Sbjct: 64  HFPYLTLSKMTALQDKLLDKEKLTNLWFSLGLGESYPFLDVNQERHRLRVKTTNPFEKSL 123

Query: 120 ESLIAALYLDGGIEVAGTFVDKY 142
           ++L+AA+++D G   +  + +K+
Sbjct: 124 KALVAAIHVDRGFSHSYNWFNKH 146


>gi|222630219|gb|EEE62351.1| hypothetical protein OsJ_17140 [Oryza sativa Japonica Group]
          Length = 606

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
             T RSGP H P FT  VE++G+        +K+ A++ AA      LK+ 
Sbjct: 119 YTTIRSGPGHTPVFTCTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQL 169



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
                     R GPDH PRF   V  +G          + R AE  AA   L   
Sbjct: 27  CFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAAAEVALNEL 81


>gi|115462131|ref|NP_001054665.1| Os05g0150400 [Oryza sativa Japonica Group]
 gi|122169532|sp|Q0DKP4|DRB2_ORYSJ RecName: Full=Double-stranded RNA-binding protein 2; AltName:
           Full=dsRNA-binding protein 2; AltName:
           Full=dsRNA-binding protein 3; Short=OsDRB3
 gi|113578216|dbj|BAF16579.1| Os05g0150400 [Oryza sativa Japonica Group]
          Length = 593

 Score = 54.9 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
             T RSGP H P FT  VE++G+        +K+ A++ AA      LK+ 
Sbjct: 106 YTTIRSGPGHTPVFTCTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQL 156



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
                     R GPDH PRF   V  +G          + R AE  AA   L   
Sbjct: 14  CFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAAAEVALNEL 68


>gi|168061835|ref|XP_001782891.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
 gi|162665613|gb|EDQ52291.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
          Length = 151

 Score = 54.5 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L +    K G       + R G +H   F+  VEI+G++ + G   SK+ AE  AA 
Sbjct: 84  CKNLLQEFAQKHGYPLPQYKSVRQGEEHSLVFSSTVEIAGVSYSGGCAKSKKEAEIKAAR 143

Query: 218 EVL 220
             L
Sbjct: 144 TAL 146


>gi|213627304|gb|AAI71078.1| hypothetical protein LOC100135229 [Xenopus (Silurana) tropicalis]
          Length = 698

 Score = 54.5 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 1/101 (0%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           + DG  +            R +   K     +         +     +YK+  +SGP H 
Sbjct: 357 FDDGSCDEKDPNKKMKRNLRKVLDSKAIDSNQPMNALMRLNQIRPGLQYKLLSQSGPVHA 416

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           P FT+ V++ G    +    SK+ A+   A +VL+  G  T
Sbjct: 417 PVFTMSVDVDGTTH-EASGPSKKTAKLHVAVKVLQAMGYPT 456



 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              SG  HD RF + VE+      +G   +K+
Sbjct: 530 ISESGGSHDKRFVMEVEVDAQKF-RGAGPNKK 560


>gi|169642169|gb|AAI60423.1| LOC100135229 protein [Xenopus (Silurana) tropicalis]
          Length = 675

 Score = 54.5 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 1/101 (0%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           + DG  +            R +   K     +         +     +YK+  +SGP H 
Sbjct: 357 FDDGSCDEKDPNKKMKRNLRKVLDSKAIDSNQPMNALMRLNQIRPGLQYKLLSQSGPVHA 416

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           P FT+ V++ G    +    SK+ A+   A +VL+  G  T
Sbjct: 417 PVFTMSVDVDGTTH-EASGPSKKTAKLHVAVKVLQAMGYPT 456



 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              SG  HD RF + VE+      +G   +K+
Sbjct: 530 ISESGGSHDKRFVMEVEVDAQKF-RGAGPNKK 560


>gi|156387818|ref|XP_001634399.1| predicted protein [Nematostella vectensis]
 gi|156221482|gb|EDO42336.1| predicted protein [Nematostella vectensis]
          Length = 69

 Score = 54.5 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                ++   LQE    K    PEYK     GP H  +F +VV + G   A G   SK+ 
Sbjct: 1   MASHLNSVGRLQEVTVKKGWQYPEYKDVKAKGPPHMRQFEMVVTV-GTLTATGKGRSKKD 59

Query: 211 AEQVAAAEVL 220
           A++ AA  +L
Sbjct: 60  AKRSAANAML 69


>gi|322789739|gb|EFZ14905.1| hypothetical protein SINV_08859 [Solenopsis invicta]
          Length = 885

 Score = 54.5 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +    LQE   ++    P+Y +    G  H+ +FT+V  I       G   SK+ A++ 
Sbjct: 171 NNPIGALQEMCMSRHWPPPKYTMEGEEGLPHERQFTIVCSIL-KYREVGQGKSKKVAKRQ 229

Query: 215 AAAEVLKRE 223
           AA ++ +  
Sbjct: 230 AAHKMWQAL 238


>gi|224150739|ref|XP_002337003.1| predicted protein [Populus trichocarpa]
 gi|222837556|gb|EEE75921.1| predicted protein [Populus trichocarpa]
          Length = 330

 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLKRE 223
             T +SG  H P F   VEI G     G    +K+ AE  AA       
Sbjct: 101 YWTDKSGEAHVPTFVSKVEIEGE-IFTGQGAKTKKQAEMSAAKIAYTAL 148


>gi|208690903|gb|ACI31227.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Miopithecus talapoin talapoin]
          Length = 550

 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V  E       GP+    F    +I     + G   +K+ A+Q+AA   L
Sbjct: 116 VNYEQCTLGVHGPEG---FHYKCKIGDKEYSIGTGSTKQEAKQLAAKLAL 162


>gi|242014706|ref|XP_002428026.1| Double-stranded RNA-specific editase Adar, putative [Pediculus
           humanus corporis]
 gi|212512545|gb|EEB15288.1| Double-stranded RNA-specific editase Adar, putative [Pediculus
           humanus corporis]
          Length = 669

 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           ++GP + P FT  V+I+G+    G   +K+ A+  AA   L
Sbjct: 65  QNGPGNSPIFTTTVDINGVRY-IGRGKNKKLAKHNAAEAAL 104


>gi|198415842|ref|XP_002129369.1| PREDICTED: similar to TAR (HIV) RNA binding protein 2 [Ciona
           intestinalis]
          Length = 326

 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            TP+Y +T   G  H P+F     +     A G   SK+ A+  AA  VLK  
Sbjct: 35  KTPQYDLTALEGRAHQPQFVYRCMVGD-VTATGQGGSKKIAKHAAAEAVLKTL 86



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 1/128 (0%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +  +  D+          I        +     +G +E                      
Sbjct: 55  YRCMVGDVTATGQGGSKKIAKHAAAEAVLKTLTNGLVEPESFPDVMETSAVEYGRDVDDT 114

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE   A+    PEY +   +GP H   F +   +       G   +K+ A+++A
Sbjct: 115 NPVGSLQELVVARGWRLPEYALAHETGPAHKKEFIICCTVESFKE-YGSGSAKKHAKRLA 173

Query: 216 AAEVLKRE 223
           AA +  + 
Sbjct: 174 AANMFTKI 181


>gi|255637537|gb|ACU19095.1| unknown [Glycine max]
          Length = 359

 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                 K  LQE+A       P Y+      P     F+  V+I G+    G   +K+ A
Sbjct: 97  HETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEA 156

Query: 212 EQVAAAEVL 220
           E  AA   L
Sbjct: 157 EIKAARTAL 165



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKRE 223
             T + GP H+P F   V ++ +         +++AAEQ AA   L   
Sbjct: 34  YETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALVEL 82


>gi|148683240|gb|EDL15187.1| adenosine deaminase, RNA-specific, isoform CRA_c [Mus musculus]
          Length = 700

 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
              +E       +     +  +  F   +          K G + E+++  + GP HDP+
Sbjct: 61  HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 120

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 121 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 155



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 218 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 263



 Score = 42.6 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           RF   V I+G         SK+ A+Q AA + 
Sbjct: 9   RFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 40


>gi|148683241|gb|EDL15188.1| adenosine deaminase, RNA-specific, isoform CRA_d [Mus musculus]
          Length = 674

 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
              +E       +     +  +  F   +          K G + E+++  + GP HDP+
Sbjct: 61  HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 120

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 121 FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 155



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 218 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 263



 Score = 42.6 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           RF   V I+G         SK+ A+Q AA + 
Sbjct: 9   RFKFQVVINGREFPPAEAGSKKVAKQDAAVKA 40


>gi|13236212|gb|AAK16101.1|AF291875_1 RNA adenosine deaminase 1 [Mus musculus]
          Length = 634

 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
              +E       +     +  +  F   +          K G + E+++  + GP HDP+
Sbjct: 21  HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 80

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 81  FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 115



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 178 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 223


>gi|13236216|gb|AAK16103.1|AF291877_1 RNA adenosine deaminase 1 [Mus musculus]
          Length = 660

 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
              +E       +     +  +  F   +          K G + E+++  + GP HDP+
Sbjct: 21  HCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPK 80

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +           SK+ A+Q+AA E +K  
Sbjct: 81  FQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKAL 115



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+P+F    ++ G         SK+  +Q AA   L+  
Sbjct: 178 IDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 223


>gi|312374197|gb|EFR21805.1| hypothetical protein AND_16335 [Anopheles darlingi]
          Length = 358

 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 35/145 (24%), Gaps = 1/145 (0%)

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           V         + + +  F   ++  +                     L     + +    
Sbjct: 213 VEYCKQLFHFKTVRVLRFKSWAARRKFTKHRKHIKNLQRPTLPDGTKLITFPMLNMEDEA 272

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
            + + + +          +   +                         P ++  V I+ L
Sbjct: 273 GNPHARPKKEWIMNPNGKSYVCILHEYVQHALRKQPAYEFKELENAATP-YSATVTINEL 331

Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223
               G   SK+ A+  AA E L+  
Sbjct: 332 KYGTGYGTSKKQAKSEAARETLEIL 356


>gi|154150151|ref|YP_001403769.1| ribonuclease III [Candidatus Methanoregula boonei 6A8]
 gi|153998703|gb|ABS55126.1| ribonuclease III [Methanoregula boonei 6A8]
          Length = 196

 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 11/169 (6%)

Query: 1   MSAL----RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY------ERLEFLGDRI 50
           M ++      + LE+ IGY F  +  L +ALTHS+ ++   +        +    LGD +
Sbjct: 1   MKSMEKKENLAELERIIGYHFFEQQHLIRALTHSAYANEVIQKNRICLTQDAYSTLGDAV 60

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           L   +           ++G ++     L    + +Q+ R L +  F+R+    +    S 
Sbjct: 61  LKTSLIL-FLMEKGLQEKGAITRAKEQLEDNASLAQIGRRLKIRRFVRLGRGEKDLWKSG 119

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT 159
             +I AD VE++I A+YLD    +               +   R +   
Sbjct: 120 EDTILADTVEAIIGAVYLDSDASLGVVRQCIGAWLEPELARVRREEPPR 168


>gi|307172924|gb|EFN64091.1| Interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Camponotus floridanus]
          Length = 376

 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +    LQE   ++    P+Y +    G  H+ +FT+V  I       G   SK+ A++ 
Sbjct: 163 NNPIGALQEMCMSRHWPPPKYTMEGEEGLPHERQFTIVCSIL-KYREVGQGKSKKVAKRH 221

Query: 215 AAAEVLKRE 223
           AA ++ +  
Sbjct: 222 AAHKMWQAL 230


>gi|224146035|ref|XP_002325855.1| predicted protein [Populus trichocarpa]
 gi|222862730|gb|EEF00237.1| predicted protein [Populus trichocarpa]
          Length = 281

 Score = 54.5 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 23/62 (37%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L +    + G       T +SG  H P F   VEI G+        +K+ AE  AA 
Sbjct: 214 YKNLLQDMAQREGCGLPTYFTEKSGEAHAPTFISTVEIDGVNFTGKEARNKKQAEMSAAK 273

Query: 218 EV 219
             
Sbjct: 274 IA 275


>gi|332029664|gb|EGI69553.1| Interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Acromyrmex echinatior]
          Length = 377

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +    LQE   ++    P+Y +    G  H+ +FT+V  I       G   SK+ A++ 
Sbjct: 164 NNPIGALQEMCMSRHWPPPKYSMEGEEGLPHERQFTIVCSIL-KYREVGQGKSKKVAKRH 222

Query: 215 AAAEVLKRE 223
           AA ++ +  
Sbjct: 223 AAHKMWQAL 231


>gi|330889504|gb|EGH22165.1| ribonuclease III [Pseudomonas syringae pv. mori str. 301020]
          Length = 171

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 75/154 (48%), Gaps = 3/154 (1%)

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+L
Sbjct: 1   FPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 60

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLD G+E A   V  +              +D KT LQE+  ++    P Y+V   
Sbjct: 61  IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDI 120

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
            G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 121 QGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 154


>gi|321259818|ref|XP_003194629.1| hypothetical protein CGB_F1490W [Cryptococcus gattii WM276]
 gi|317461101|gb|ADV22842.1| Hypothetical Protein CGB_F1490W [Cryptococcus gattii WM276]
          Length = 433

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 91/264 (34%), Gaps = 58/264 (21%)

Query: 19  NRSLLEKALTHSSISHSYQES-----------YERLEFLGDRILGLLISTLLFNHFDSAK 67
           +R LL +  TH+S   + ++S            E+LE +GD +LG +++ LL + + +  
Sbjct: 170 DRELLRQVFTHTSYVGARKQSALFDKEAFHHDNEKLEHVGDALLGCIVTCLLHDLYPNLN 229

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
            G  +      V  +T SQ++R   +   +    +   ++    T   A++ E+ +A L+
Sbjct: 230 PGNATEMKAICVCNQTLSQLSRRYKMPERLITDVNA-TEILKNGTKTTANIFEAYVAGLH 288

Query: 128 --------------------LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
                                  G+E    ++   ++  A     + +  +  L+     
Sbjct: 289 YSYLKHGNTKDVDGGDGPKTHGQGLEHLQEWLRPLFEPIAEWVLGYMKKEQERLEAETAV 348

Query: 168 KFGVTPEYKVTFRSGPDHD------------PRFTVV---------VEI----SGLAP-A 201
           K G          +G                P +T           + I     G     
Sbjct: 349 KAGSMDTDLDDLANGASGKLNELFISRGAGMPVYTYEPWGVDMWKAIVIARNRDGKEWQG 408

Query: 202 QGMDCSKRAAEQVAAAEVLKREGI 225
           +     K+ A  VAA +VL +  +
Sbjct: 409 EATRTKKKQAATVAAYKVLMQLEV 432


>gi|307167407|gb|EFN60992.1| Interferon-inducible double stranded RNA-dependent protein kinase
           activator A-like protein [Camponotus floridanus]
          Length = 341

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
              + +     +A  ELQ+       + PEY +T  +GP H   FT+  ++S     +G+
Sbjct: 99  PPKIPANVPFVNAIGELQDLCAENNLMEPEYVLTKDTGPPHARIFTIQCKVSN-FVEEGV 157

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A+  AA ++++R  
Sbjct: 158 QSTKKQAKHEAARKMVERIK 177



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
                  + +    K G+ P+Y++    G  H   FT  V   GL  A G    K+ A+ 
Sbjct: 1   MSKTPVSILQEMMVKQGMVPDYELIHNGGGRHVNTFTYRVICDGLT-AIGSGRCKKEAKH 59

Query: 214 VAAAEVL 220
            AA  +L
Sbjct: 60  EAAKAML 66


>gi|195434256|ref|XP_002065119.1| GK14845 [Drosophila willistoni]
 gi|194161204|gb|EDW76105.1| GK14845 [Drosophila willistoni]
          Length = 512

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    +    P Y+     G  H+  FT+   I       G   SK+ A+++A
Sbjct: 297 NPIGWLQEMCMQRRWPPPSYETETELGLPHERLFTIACTILNYRE-VGKGKSKKIAKRLA 355

Query: 216 AAEVLKRE 223
           A ++  R 
Sbjct: 356 AHKMWTRL 363



 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223
           TP Y++    G  H+P F   V          A G   SK+ A+  AA  ++ + 
Sbjct: 192 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 246


>gi|330982653|gb|EGH80756.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 176

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/147 (34%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+LI A+YLD
Sbjct: 13  QLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAIYLD 72

Query: 130 GGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            G+E A   V  +              +D KT LQE+  ++    P Y+V    G  H  
Sbjct: 73  AGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEPHCR 132

Query: 188 RFTVVVEISGL-APAQGMDCSKRAAEQ 213
            F V  EI+ L   ++G   S+R AEQ
Sbjct: 133 TFFVECEINLLNEKSRGQGVSRRIAEQ 159


>gi|322787500|gb|EFZ13588.1| hypothetical protein SINV_13344 [Solenopsis invicta]
          Length = 1224

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/142 (11%), Positives = 38/142 (26%), Gaps = 4/142 (2%)

Query: 86   QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE---SLIAALYLDGGIEVAGTFVDKY 142
               + + +  F   S+  +                   + +    +          +   
Sbjct: 868  FRFKSIKVMRFQSWSARRKFTKIKKHRKQLERPTLPDGTKLITFPISSSSGSGNWNIADD 927

Query: 143  WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAPA 201
              QR  K        K+ +            +         ++    ++ VV I+ +   
Sbjct: 928  NGQRPAKHWIMNPSGKSYVCILHEYVQHALKKQPTYKFKELENAATPYSAVVCINDMEYG 987

Query: 202  QGMDCSKRAAEQVAAAEVLKRE 223
             G   SK+ A+  AA + L+  
Sbjct: 988  SGFGSSKKQAKANAARKTLEIL 1009


>gi|145539580|ref|XP_001455480.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423288|emb|CAK88083.1| unnamed protein product [Paramecium tetraurelia]
          Length = 822

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 82/254 (32%), Gaps = 35/254 (13%)

Query: 6   YSTLE-KRIGYAFANRSLLEKALT---------------HSSISHSYQES---YERLEFL 46
            + L+ + I Y F N+ +L ++                 +  + +S   S   ++ LE +
Sbjct: 570 LNYLQTEVIEYQFHNKYILYESFRVQGSNMDLDLPLELYYKFLLNSNTPSTRGHQMLELI 629

Query: 47  GDRILGLLISTLLFNHFDSAKEGELSVRFNS-------------LVSAETCSQVARELDL 93
           GD +L   I    FN            +                  +     Q    L  
Sbjct: 630 GDAVLECYIMCNCFNQIIFKFTPTNLYKIKMVLLSNSFLSKIAICYNIMHNFQDTAILQF 689

Query: 94  ASFIRVSSDLRKDVCS--FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
              +++         +   +  + +D  E+L+ A+++DGG +    F+ K + +      
Sbjct: 690 IETVKLDEKFTYYNGNFVRVPKVLSDTFEALVGAIFMDGGWQPVCKFLKKVYLKFIPFVC 749

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
            +  D    + +  H        +        + + +F   + I G    +     +R A
Sbjct: 750 TYLNDIDDHVIDRVHQYSASKQGHMDIKSFKQE-NGQFCYEIRIDGQIVGRFTHEHERVA 808

Query: 212 EQVAAAEVLKREGI 225
           ++ A     K+  I
Sbjct: 809 KEKACESACKKLKI 822



 Score = 38.0 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 6   YSTLEKRIGYAFANRSL-LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            S     IG      +L +++A++ +S +     +YE LE LGD IL  L +  +     
Sbjct: 353 ISEFANSIGIE---PNLRVQRAISRASYNRDI--NYELLETLGDSILKYLATVSVSLGPQ 407

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
           +  E  LS + + +V+     +   +            
Sbjct: 408 NTNENILSDQRSQIVNNNFIGKHLFKYQYFGLFHYVRS 445


>gi|15079052|ref|NP_149803.1| 340R [Invertebrate iridescent virus 6]
 gi|82012085|sp|Q91FI4|340R_IIV6 RecName: Full=DRBM domain-containing protein 340R
 gi|15042421|gb|AAK82201.1|AF303741_342 340R [Invertebrate iridescent virus 6]
          Length = 173

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA--- 199
             ++       + ++   L E+ H      P Y    ++GPDH P F +   I       
Sbjct: 17  CTKKEQNIDMEKFNSIGFLNEFCHKNKYKPPSYTTLNQNGPDHSPTFNIECRIVDYKPNG 76

Query: 200 PAQGMDCSKRAAEQVAAAEVLKREGIWT 227
              G   S + A++ AA + +K   + T
Sbjct: 77  KFIGSGLSMKEAKKNAAFKTIKELNLLT 104


>gi|58268964|ref|XP_571638.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134112802|ref|XP_774944.1| hypothetical protein CNBF1090 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257592|gb|EAL20297.1| hypothetical protein CNBF1090 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227873|gb|AAW44331.1| expressed protein [Cryptococcus neoformans var. neoformans JEC21]
          Length = 418

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 19  NRSLLEKALTHSSISHSYQES-----------YERLEFLGDRILGLLISTLLFNHFDSAK 67
           +R LL +  TH+S   + ++S            E+LE +GD +LG +++ LL + + +  
Sbjct: 155 DRELLRQVFTHTSYVGARKQSALFDKEAFHHDNEKLEHVGDALLGCIVTCLLHDLYPNLN 214

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
            G  +      V  +T SQ++R   +   +    +   ++    T   A++ E+ +A L+
Sbjct: 215 PGNATEMKAICVCNQTLSQLSRRYKMPERLITDVNA-TEILKNGTKTTANIFEAYVAGLH 273

Query: 128 LDG 130
              
Sbjct: 274 YSY 276


>gi|312086019|ref|XP_003144912.1| hypothetical protein LOAG_09336 [Loa loa]
 gi|307759924|gb|EFO19158.1| hypothetical protein LOAG_09336 [Loa loa]
          Length = 637

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 27/72 (37%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                 +  L++       +  +        P+  P F   + ++G    +G+  SK+ A
Sbjct: 201 PPYALHQLMLKQNRKKNPDLVYDEPQDISEAPNKPPMFKCTLTVNGTHKFEGIGQSKKTA 260

Query: 212 EQVAAAEVLKRE 223
           +  AA + L + 
Sbjct: 261 KSAAAEQALTKL 272


>gi|6730350|pdb|1DI2|A Chain A, Crystal Structure Of A Dsrna-Binding Domain Complexed With
           Dsrna: Molecular Basis Of Double-Stranded Rna-Protein
           Interactions
 gi|6730351|pdb|1DI2|B Chain B, Crystal Structure Of A Dsrna-Binding Domain Complexed With
           Dsrna: Molecular Basis Of Double-Stranded Rna-Protein
           Interactions
          Length = 69

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
                LQE A  K    PEY V   SGP H   FT+   +       G   SK+ A++VA
Sbjct: 1   MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVE-TFVETGSGTSKQVAKRVA 59

Query: 216 AAEVLKREG 224
           A ++L +  
Sbjct: 60  AEKLLTKFK 68


>gi|195115174|ref|XP_002002139.1| GI17218 [Drosophila mojavensis]
 gi|193912714|gb|EDW11581.1| GI17218 [Drosophila mojavensis]
          Length = 454

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    +    P Y+     G  H+  FT+   I       G   SK+ A+++A
Sbjct: 239 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACTILNYHE-VGKGKSKKIAKRLA 297

Query: 216 AAEVLKRE 223
           A ++  R 
Sbjct: 298 AHKMWTRL 305



 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223
           TP Y++    G  H+P F   V          A G   SK+ A+  AA  ++ + 
Sbjct: 138 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 192


>gi|228469924|ref|ZP_04054860.1| ribonuclease III [Porphyromonas uenonis 60-3]
 gi|228308469|gb|EEK17267.1| ribonuclease III [Porphyromonas uenonis 60-3]
          Length = 91

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
           ++     +    ++ K+EL EW               ++ P HD  F   V I G    +
Sbjct: 1   YRDMREHTVASIQNYKSELIEWVQKHHLSHEFRLEEHQTMP-HD-HFIYSVWIDGKPVGR 58

Query: 203 GMDCSKRAAEQVAAAEVLKREG 224
           G   SK+ A+Q AA + L+   
Sbjct: 59  GAGSSKKRAQQEAARDTLELLK 80


>gi|170574690|ref|XP_001892920.1| hypothetical protein,  conserved [Brugia malayi]
 gi|158601296|gb|EDP38248.1| hypothetical protein, conserved [Brugia malayi]
          Length = 863

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 27/72 (37%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                 +  L++       +  +        P+  P F   + I+G    +G+  SK+ A
Sbjct: 427 PPYALHQLMLKQNRKKNPDIVYDEPQDISQAPNKPPMFKCTLTINGTHKFEGIGQSKKTA 486

Query: 212 EQVAAAEVLKRE 223
           +  AA + L + 
Sbjct: 487 KSAAAEQALTKL 498



 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/174 (9%), Positives = 44/174 (25%), Gaps = 12/174 (6%)

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
             ++       ++   ++ VS    +      +     +  S    +   +  S      
Sbjct: 46  RFYYPMMSLNNITKNKSNRVSGGVGTGYHNYQNHYPQQQHYSGTDPNTTGYYGSGFFTKH 105

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +   + +   G  E +     +  +               + + ++             +
Sbjct: 106 QLQHSTVSSRGKRERSYGSFPRKNR-FDCGVDTTYAPPNKKSRTYSATGKTAAMILNELY 164

Query: 180 RSGPDHD----------PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               D            PRF     +           +K+AA+Q+A    LK  
Sbjct: 165 PEFKDECSYRTLVVNKLPRFECSFVVQAKKFC-AEGSNKKAAKQLACELALKEL 217


>gi|156554944|ref|XP_001601978.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 900

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
           +   + L E+   +    P Y++ F  GPDH   F   V+++G+     +   +K+ A+ 
Sbjct: 827 KHPVSLLGEYCSKRKFGAPVYELCFECGPDHKKNFLFKVKVNGVEYKPAVASPNKKLAKA 886

Query: 214 VAAAEVLKREGIW 226
            AA   L+  G+ 
Sbjct: 887 EAAQVCLQSIGLL 899


>gi|307169155|gb|EFN61971.1| SON protein [Camponotus floridanus]
          Length = 883

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
           +   + L E+   K    P Y++ F  GPDH   F   V+++G+     +   +K+ A+ 
Sbjct: 809 KHPVSLLGEYCSKKKLGAPVYELCFECGPDHRKNFLFKVKVNGIEYKPSVASPNKKQAKA 868

Query: 214 VAAAEVLKREGIW 226
            AA   L+  G+ 
Sbjct: 869 EAAQICLQSLGLL 881


>gi|93278802|pdb|2B7V|A Chain A, Structure Of Adar2 Dsrbm2
 gi|310689630|pdb|2L2K|B Chain B, Solution Nmr Structure Of The RG STEM LOOP RNA-Adar2
           Dsrbm2 Complex
          Length = 71

 Score = 54.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 19  YDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 63


>gi|307203953|gb|EFN82860.1| SON protein [Harpegnathos saltator]
          Length = 891

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
           +   + L E+   K    P Y + F  GPDH   F   V+++G+     +   +K+ A+ 
Sbjct: 817 KHPVSLLGEYCSKKKLGAPVYDLCFECGPDHRKNFLFKVKVNGIEYKPSVASPNKKQAKA 876

Query: 214 VAAAEVLKREGIW 226
            AA   L+  G+ 
Sbjct: 877 EAAQICLQTLGLL 889


>gi|328705090|ref|XP_003242690.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A homolog A-like [Acyrthosiphon
           pisum]
          Length = 341

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
                        + + T LQ+  + +   T +Y++    G    P F   V   G   A
Sbjct: 1   MDCTAYNVKFDTDKTSVTLLQDVLNKQGVRTVQYELLQIEGAVSAPSFQYRVT-DGRFVA 59

Query: 202 QGMDCSKRAAEQVAAAEVLK 221
            G   SK+ A+Q AA  +L+
Sbjct: 60  YGQGKSKKEAKQNAAKALLR 79



 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
            +         R+    LQE   +     P Y      G  H   FTV   +S      G
Sbjct: 108 FETMNFGDNDERNPIGMLQELCTSLHLPPPVYITECEDGLPHQRLFTVSCNVSEYKE-TG 166

Query: 204 MDCSKRAAEQVAAAE---VLKRE 223
           +  SK+ A+++AA     +LK  
Sbjct: 167 VGKSKKIAKRLAANNLYLMLKSI 189


>gi|297624883|ref|YP_003706317.1| double-stranded RNA binding domain-containing protein [Truepera
           radiovictrix DSM 17093]
 gi|297166063|gb|ADI15774.1| double-stranded RNA binding domain protein [Truepera radiovictrix
           DSM 17093]
          Length = 157

 Score = 54.2 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           GPDH+PRF   V I G    +G   +KR AE+ A+
Sbjct: 28  GPDHEPRFESEVLIQGEVYGRGEAGTKRDAERRAS 62


>gi|322786514|gb|EFZ12948.1| hypothetical protein SINV_03181 [Solenopsis invicta]
          Length = 289

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 78/234 (33%), Gaps = 21/234 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERL-------------EFL--GDRI 50
                KR+  +F +   LE+A TH S     ++    +             EF+  GD +
Sbjct: 42  IYAFNKRLSESF-DMEKLEQAFTHRSYIIQEEQRQREMGIEDPTLAIQDNTEFVRKGDEL 100

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
               + + L     +A E  +    + L+S E  ++ A  +     I   +  +      
Sbjct: 101 TSQFVQSYLSQILPNASEDVIISLHDYLLSEEILAKAAFHIGTKDIILTEAMTQ----KT 156

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
           +      +V +L  ++ ++        F+     ++ L            L +    +  
Sbjct: 157 LADTFLALVAALAESVDVNHAANFVKDFLIVILAEKDLLEIWKPTQPVEHLNDVLQKQNR 216

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              E ++   +G +     + V +         G   + + A+ VAA  +L R 
Sbjct: 217 SPVEPRLIGHTGQNTLLVVYHVAMYSDKEFLGSGFGQTIQEAKNVAALNILSRI 270


>gi|290983750|ref|XP_002674591.1| predicted protein [Naegleria gruberi]
 gi|284088182|gb|EFC41847.1| predicted protein [Naegleria gruberi]
          Length = 809

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 85/280 (30%), Gaps = 65/280 (23%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------------------Y 36
              L+  + Y F +  L+++AL   S +++                             +
Sbjct: 529 IEKLQDILHYRFRDVGLIQEALISCSYNNTFMDLRNVPMTEKIQKFLKKRNDSKIVGLYH 588

Query: 37  QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA--------------- 81
             + E+L+ LG  +L  +++  ++  F  A+  +L++  + ++S                
Sbjct: 589 LYNNEQLKLLGSALLKFMVTEFVYKRFTEAQPSKLTLLAHQIISKQGKVFSAIHEKFRFD 648

Query: 82  ----------------ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL--I 123
                           ++       L      +     + +  +   +   ++  S    
Sbjct: 649 QFLMKTDIDADYSEIQQSYDCFTALLGAIFMDQDCLFYKFEFATISNTYTEELANSTDPC 708

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ++ +L         F   +      +        +   +        V  +   ++    
Sbjct: 709 SSYFLKRHDVTPDKFFYSFLFPYIEQFELSPYTIEPPKKHTLQHLIQVNHKSVPSYVKNQ 768

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR--AAEQVAAAEVLK 221
           D    F V + ++G   ++G+  SK    AE+ A    LK
Sbjct: 769 DVSQEFCVTIMVNGQEFSKGV-SSKSFAEAEEQAIEMGLK 807



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 71/177 (40%), Gaps = 12/177 (6%)

Query: 14  GYAF-ANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           GY F  +  L+  A T  S +H     +  YERLEF+GD ++ L     L     +    
Sbjct: 357 GYRFLKDPLLIRVAHTFPSYAHKMNFGRGHYERLEFMGDSVVNLTACVELIKSCRNDDSK 416

Query: 70  ELSVRFNSLV--SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           +        V  + ++ ++ A +L ++     SSD       F    Q++V+ES+I ALY
Sbjct: 417 KGDWNAGFTVLIANDSITREAEKLQISEHFLNSSD------KFSKKAQSNVIESIIGALY 470

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +  GI  A +F  +     ++     ++ + +        +        +    G D
Sbjct: 471 MAEGIRGARSFAKELLIPTSIDFKCLKKFSSSFPSVSNEGEQWKRDVEHMKLFIGQD 527


>gi|307006603|gb|ADN23586.1| endonuclease [Hyalomma marginatum rufipes]
          Length = 195

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFDS 65
           E+  GY F ++S L +AL H +   S + +     + L+++GD +L  +IS  L  H   
Sbjct: 23  ERLGGYQFKSKSTLLRALLHRTYKQSKRPNNKTFCDPLDYVGDYVLKFIISQYLLEHCAV 82

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
             + +L+ R   +   E  + +A        + +      +  +       D
Sbjct: 83  KTKEQLAQRRALVECQEVYALLAVRNGFHEAVFIDDRRDWEHLNEYIKNVKD 134


>gi|148233972|ref|NP_001081675.1| adenosine deaminase, RNA-specific [Xenopus laevis]
 gi|1932813|gb|AAB51687.1| dsRNA adenosine deaminase [Xenopus laevis]
          Length = 1270

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                   L      K G   E+++  + GP HDP+FT  V+I        +  +K+ A+
Sbjct: 675 PCNKNPISLLMEHGQKSGNMCEFQLVSQEGPPHDPKFTYTVKIGNQTFPPVVANNKKMAK 734

Query: 213 QVAAAEVLKRE 223
            +AA   ++  
Sbjct: 735 HLAAEAAVREL 745



 Score = 38.4 bits (87), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 26/89 (29%)

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
               +A    + G+E    +       R  K    +                   ++ + 
Sbjct: 536 TADALAVTQEELGMEYPQAYEPVKEFSRLDKLLSCQEKNPVSGLLEFTHYCSQQCDFALL 595

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            +SGP HDPRF +   I G         S
Sbjct: 596 NQSGPSHDPRFKIQAVIDGRRFPVAEANS 624


>gi|7362760|emb|CAB83130.1| putative protein [Arabidopsis thaliana]
          Length = 345

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 31/98 (31%)

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
                +     + +  F      + A         A   L +    K      +  T  S
Sbjct: 37  RCNVTFCGQTFQSSEFFPTLKSAEHAAAKIAGIDVAYKNLLQEIAQKESSLLPFYATATS 96

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GP H P FT  VE +G   +     +K+ AE  AA   
Sbjct: 97  GPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVA 134



 Score = 39.5 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219
            R GP H PRF   V   G          + ++AE  AA   
Sbjct: 26  EREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAAAKIA 67


>gi|225451531|ref|XP_002275052.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296082307|emb|CBI21312.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             T RSGP H P FT  VE++G+        +K+ AE+ AA        
Sbjct: 106 YTTVRSGPGHVPVFTCTVELAGMNFTGESAKTKKQAEKNAAIAAWSALK 154



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220
                     R GPDH PRF   V  +G          + R AE  AA   L
Sbjct: 14  CFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVAL 65


>gi|213626233|gb|AAI70035.1| Unknown (protein for MGC:196762) [Xenopus laevis]
          Length = 1313

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
                  L      K G   E+++  + GP HDP+FT  V+I        +  +K+ A+ 
Sbjct: 719 CNKNPISLLMEHGQKSGNMCEFQLVSQEGPPHDPKFTYTVKIGNQTFPPVVANNKKMAKH 778

Query: 214 VAAAEVLKRE 223
           +AA   ++  
Sbjct: 779 LAAEAAVREL 788



 Score = 38.4 bits (87), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 26/89 (29%)

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
               +A    + G+E    +       R  K    +                   ++ + 
Sbjct: 580 TADALAVTQEELGMEYPQAYEPVKEFSRLDKLLSCQEKNPVSGLLEFTHYCSQQCDFALL 639

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            +SGP HDPRF +   I G         S
Sbjct: 640 NQSGPSHDPRFKIQAVIDGRRFPVAEANS 668


>gi|195572230|ref|XP_002104099.1| GD18627 [Drosophila simulans]
 gi|194200026|gb|EDX13602.1| GD18627 [Drosophila simulans]
          Length = 899

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRA 210
              +     L E       + P+YK+    GP ++  F   VE++G          +K+ 
Sbjct: 821 TQDKHPVCVLNELTSKNKWMPPQYKLREDIGPAYNRSFLFSVEVNGQTFTPDRGCNNKKE 880

Query: 211 AEQVAAAEVLKREGIW 226
           A+  AAA  L+  GI 
Sbjct: 881 AKLNAAALCLRALGIL 896


>gi|195330360|ref|XP_002031872.1| GM23818 [Drosophila sechellia]
 gi|194120815|gb|EDW42858.1| GM23818 [Drosophila sechellia]
          Length = 899

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRA 210
              +     L E       + P+YK+    GP ++  F   VE++G          +K+ 
Sbjct: 821 TQDKHPVCVLNELTSKNKWMPPQYKLREDIGPAYNRSFLFSVEVNGQTFTPDRGCNNKKE 880

Query: 211 AEQVAAAEVLKREGIW 226
           A+  AAA  L+  GI 
Sbjct: 881 AKLNAAALCLRALGIL 896


>gi|147820257|emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]
          Length = 552

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             T RSGP H P FT  VE++G+        +K+ AE+ AA        
Sbjct: 177 YTTVRSGPGHVPVFTCTVELAGMNFTGESAKTKKQAEKNAAIAAWSALK 225



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 1/89 (1%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           +              ++      D      +    +           R GPDH PRF   
Sbjct: 48  DCFCPERQGTHANVGVREKTGEVDMFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKAS 107

Query: 193 VEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220
           V  +G          + R AE  AA   L
Sbjct: 108 VNFNGEIFESPSYCTTLRQAEHAAAEVAL 136


>gi|170063939|ref|XP_001867321.1| partner of drosha [Culex quinquefasciatus]
 gi|167881396|gb|EDS44779.1| partner of drosha [Culex quinquefasciatus]
          Length = 683

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 33/138 (23%), Gaps = 1/138 (0%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
              + + +  F   ++  +                     L     +   G     + + 
Sbjct: 328 FRFKTIRVMRFKSWAARRKLTKHRKHLKNLQRPTLPDGTKLITFPVLHTEGEKGHAHARP 387

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
           +          +   +                         P ++  V I+ L    G  
Sbjct: 388 KKEWIMNPNGKSYVCILHEYVQHALRKQPSYEFKELENAATP-YSATVSINELKYGTGYG 446

Query: 206 CSKRAAEQVAAAEVLKRE 223
            SK+ A+  AA E L+  
Sbjct: 447 TSKKQAKSEAARETLEIL 464


>gi|47223534|emb|CAF98021.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 687

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 2/182 (1%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
           +   G+    +     + +   +     L      +       +    +    F+++S  
Sbjct: 156 MNMAGNAAGMMGFRREVPSVVHAQLTYCLYSLMVEMAMKSKDFRYHYPVPKIFFVQLSVG 215

Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
             + +    T   A    ++ A   L               ++           ++  L 
Sbjct: 216 SYEFIGEGRTRQAARHSAAMKALQTLRNEPIPERP-PQNTEEKGESDDSSDASKSEISLV 274

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                K  +   ++V   SGP H   F   V + G   A+G   SK+ +++ AA  +L+ 
Sbjct: 275 YEIALKRNLCVNFEVLKESGPPHMKSFLTRVTV-GEFSAEGEGNSKKLSKKRAAISILQD 333

Query: 223 EG 224
             
Sbjct: 334 LK 335



 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         + P+YK+    GP H   FTV + +      +    S +
Sbjct: 1   MANPKEKTPMCLVNELARFNRIQPQYKLLSERGPAHAKIFTVQLALGEQVW-EAEGTSIK 59

Query: 210 AAEQVAAAEVLK 221
            A+   AA  L+
Sbjct: 60  KAQHSTAARALE 71


>gi|226498844|ref|NP_001146621.1| hypothetical protein LOC100280218 [Zea mays]
 gi|219888055|gb|ACL54402.1| unknown [Zea mays]
 gi|224029829|gb|ACN33990.1| unknown [Zea mays]
          Length = 289

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
             T RSGP H P F   VE++G A       +K+ A++ AA      LK+ 
Sbjct: 106 YTTIRSGPGHTPVFACTVELAGKAFTGNPGKTKKQAQKNAAMAAWSELKKL 156



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223
                     R GPDH PRF   V  +G      +   + R AE  AA   L   
Sbjct: 14  CFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAAAEVALNEL 68


>gi|302142076|emb|CBI19279.3| unnamed protein product [Vitis vinifera]
          Length = 415

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 27/79 (34%)

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
             K+   +        K  LQE+A       P Y       P     F+  VEI G+   
Sbjct: 87  NMKECISQPVHETGLCKNLLQEYAQKMNYAIPMYVCQKDESPGRAASFSCTVEIGGIRYI 146

Query: 202 QGMDCSKRAAEQVAAAEVL 220
                +K+ AE  AA   L
Sbjct: 147 GAAARTKKEAEIKAARTAL 165



 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLKRE 223
             T + GP H P F   V ++ +         +++AAEQ AA   L   
Sbjct: 34  YDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALVEL 82


>gi|225459069|ref|XP_002285663.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147781065|emb|CAN68128.1| hypothetical protein VITISV_043706 [Vitis vinifera]
          Length = 400

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 27/79 (34%)

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
             K+   +        K  LQE+A       P Y       P     F+  VEI G+   
Sbjct: 87  NMKECISQPVHETGLCKNLLQEYAQKMNYAIPMYVCQKDESPGRAASFSCTVEIGGIRYI 146

Query: 202 QGMDCSKRAAEQVAAAEVL 220
                +K+ AE  AA   L
Sbjct: 147 GAAARTKKEAEIKAARTAL 165



 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLKRE 223
             T + GP H P F   V ++ +         +++AAEQ AA   L   
Sbjct: 34  YDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALVEL 82


>gi|190690921|gb|ACE87235.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator protein [synthetic construct]
          Length = 313

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 90  RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +  +  +       G   SK+ A++ AA + L +
Sbjct: 150 EGGPAHKREYATICRLE-SFMETGKGASKKQAKRNAAEKFLAK 191



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 62  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100


>gi|134077181|emb|CAK45522.1| unnamed protein product [Aspergillus niger]
          Length = 371

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 80/256 (31%), Gaps = 37/256 (14%)

Query: 2   SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
            + + + L  R+ Y  +   L  L ++L  +S   + + + E L  LG  +L    S  L
Sbjct: 81  ESAKLAALHARL-YLPSRLPLETLARSLVDASADPNPKFNNESLATLGHDLLTHYTSEYL 139

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS------------------ 101
              +       +     + V  +T + +ARE  +      +                   
Sbjct: 140 ICTYPRLPLTVIFAAMYAYVGPKTLAAMAREWGVEPHEDQTHWRKSITSSVVYDNEFGDP 199

Query: 102 -------------DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
                        D++           A  V +++ A+YL  G   A  F ++++  R L
Sbjct: 200 VKGPKDPSEQSKQDVQNTQGVTAEQANATFVRAVMGAIYLHAGRPAAKRFFEQHFLSRHL 259

Query: 149 KSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMD 205
                        +L      +    P  ++   +G     P F V +        +G  
Sbjct: 260 NISDLFNFSQPARDLARLCARENFEQPVARIISETGRKSRHPVFVVGIYSGQDKLGEGAG 319

Query: 206 CSKRAAEQVAAAEVLK 221
            S   A   AA   LK
Sbjct: 320 ASLLEARSRAAVAALK 335


>gi|332002938|gb|AED90321.1| RNA polymerase II C-terminal domain phosphatase-like 2 [Arabidopsis
           thaliana]
          Length = 774

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F+V V  +G     GM  +K+ A Q AA   L+  
Sbjct: 685 QFSVEVLFTGEKIGIGMAKTKKDAHQQAAENALRSL 720


>gi|79503115|ref|NP_195747.2| CPL2; double-stranded RNA binding / phosphatase [Arabidopsis
           thaliana]
 gi|49175307|gb|AAT52023.1| C-terminal domain phosphatase-like 2 [Arabidopsis thaliana]
 gi|332002937|gb|AED90320.1| RNA polymerase II C-terminal domain phosphatase-like 2 [Arabidopsis
           thaliana]
          Length = 770

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F+V V  +G     GM  +K+ A Q AA   L+  
Sbjct: 685 QFSVEVLFTGEKIGIGMAKTKKDAHQQAAENALRSL 720


>gi|238055325|sp|Q5YDB5|CPL2_ARATH RecName: Full=RNA polymerase II C-terminal domain phosphatase-like
           2; Short=FCP-like 2; AltName: Full=Carboxyl-terminal
           phosphatase-like 2; Short=AtCPL2; Short=CTD
           phosphatase-like 2
 gi|6759450|emb|CAB69855.1| hypothetical protein [Arabidopsis thaliana]
          Length = 771

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F+V V  +G     GM  +K+ A Q AA   L+  
Sbjct: 686 QFSVEVLFTGEKIGIGMAKTKKDAHQQAAENALRSL 721


>gi|321456685|gb|EFX67786.1| hypothetical protein DAPPUDRAFT_115168 [Daphnia pulex]
          Length = 216

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 61/165 (36%), Gaps = 2/165 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            + +E  +GY F ++  L+  LTH S   +    E  +RLE LGD++LG L+  + +   
Sbjct: 31  LAVIETTLGYEFRHKENLKLPLTHISTNPNKVPSEDSDRLETLGDKLLGTLVMAICYTTC 90

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +   GEL+   + +   +T + +A           +      + + + S          
Sbjct: 91  PTYGAGELTNLTSMITCNDTFAVLAECAGFKGIRETARPKWTPIPARIQSANNAERMDDT 150

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
            +  +   + V  T            +     D  +  +   +++
Sbjct: 151 ESSGIFHIVNVPTTAHSIQPSTSNYNAMLDEIDPLSTDESHVNSQ 195


>gi|156550835|ref|XP_001601132.1| PREDICTED: similar to RE14437p [Nasonia vitripennis]
          Length = 394

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +    LQE   ++    P+Y +    G  H+ +FT+V  I       G   SK+ A++ 
Sbjct: 183 NNPIGSLQEMCMSRHWPPPKYSMEGEEGLPHERQFTIVCSILKYRQ-VGQGKSKKLAKRQ 241

Query: 215 AAAEVLKRE 223
           AA ++ +  
Sbjct: 242 AAHKMWQSL 250


>gi|157129346|ref|XP_001655380.1| double-stranded binding protein, putative [Aedes aegypti]
 gi|108882115|gb|EAT46340.1| double-stranded binding protein, putative [Aedes aegypti]
          Length = 564

 Score = 53.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/138 (10%), Positives = 32/138 (23%), Gaps = 1/138 (0%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
              + + +  F   ++  +                     L     +         + + 
Sbjct: 218 FKFKTIRVMRFKSWAARRKLTKHRKHMKNLQRPTLPDGTKLITFPVLHTEVEKGTTHVRP 277

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
           +          +   +                         P ++  V I+ L    G  
Sbjct: 278 KKEWIMNPNGKSYVCILHEYVQHALRKQPSYEFKELENAATP-YSATVSINELKYGTGYG 336

Query: 206 CSKRAAEQVAAAEVLKRE 223
            SK+ A+  AA E L+  
Sbjct: 337 TSKKQAKSEAARETLEIL 354


>gi|281205614|gb|EFA79803.1| hypothetical protein PPL_06622 [Polysphondylium pallidum PN500]
          Length = 1043

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 62/185 (33%), Gaps = 18/185 (9%)

Query: 15  YAFANRSLLEKALTHSSISHSY----------------QESYERLEFLGDRILGLLISTL 58
               N+ LL +  TH SI+ +                 +   +RLE+ GD IL   I+  
Sbjct: 662 ININNQRLLREVFTHPSINRNNTVPPRSLKVFKDYQLFKSDNQRLEYFGDSILKFCITYY 721

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  + +A EG L+ + + + S      +  +  +   +R+     +D       +   +
Sbjct: 722 LYFLYPNAPEGFLTTKRSEVTSNTYLQNICDQTSIDDILRLGLSNTEDYKKPKADVIEAL 781

Query: 119 VESLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
             ++     ++   E      F  +       K         +E Q+       +  +  
Sbjct: 782 FAAVYLECGINVVYEFIINLLFKIENVVFPTYKCEHTNETPLSESQKSVLFNMNINIKDT 841

Query: 177 VTFRS 181
             F+ 
Sbjct: 842 CLFQE 846



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
                +  L ++A+   + S   + +Y+RLEFLGD  + L++S  L+++F   +EG LS 
Sbjct: 835 NINIKDTCLFQEAM---NCSSDPKMNYQRLEFLGDSYIDLVVSEFLYHNFPREQEGFLSQ 891

Query: 74  RFNSLVSAETCSQVAREL 91
               LV  E  +  A  L
Sbjct: 892 TRALLVRNEKLANTANHL 909



 Score = 44.9 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 190 TVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
            V V   G     +G   SK+ AE+ AA   L+  
Sbjct: 40  EVTVNFKGQRFTGEGKARSKKDAEKTAALNALQSI 74


>gi|156373222|ref|XP_001629432.1| predicted protein [Nematostella vectensis]
 gi|156216432|gb|EDO37369.1| predicted protein [Nematostella vectensis]
          Length = 313

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           FT  V I     A G   +K+ A++ AA   L    
Sbjct: 125 FTCAVIIQDKLVATGEASNKKDAKRNAAENALDVLK 160


>gi|268325168|emb|CBH38756.1| conserved hypothetical protein, containing RNase3 and AIR
           carboxylase domain [uncultured archaeon]
 gi|268326276|emb|CBH39864.1| conserved hypothetical protein, containing RNase3 and AIR
           carboxylase domain [uncultured archaeon]
          Length = 421

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 7/132 (5%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLE------FLGDRILGLLISTLLFN 61
           T+E+ I Y+F ++++L +ALT  + +   ++  +  E       LGD +L  ++  LL  
Sbjct: 277 TIEENIRYSFLDKNILNRALTRKAYALEQRQRNQACEDQEIFRTLGDAVLKAVLVDLLIK 336

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                +E     +       E+ +++ REL +   I +    +K   +    + A+  E+
Sbjct: 337 SGCKTREEITRKKIELE-REESLAKIGRELGIGESIMLGVGEKKQRANEEPYVLAETFEA 395

Query: 122 LIAALYLDGGIE 133
           +I A+YLDG  +
Sbjct: 396 VIGAIYLDGCYD 407


>gi|326511242|dbj|BAJ87635.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
             T RSG  H P FT  VE++G+        +K+ AE+ AA+     LK+ 
Sbjct: 106 YTTERSGLGHLPVFTCTVELAGITFTGDHAKNKKQAEKNAASAAWSSLKQL 156


>gi|226494720|ref|NP_001142144.1| hypothetical protein LOC100274309 [Zea mays]
 gi|194707342|gb|ACF87755.1| unknown [Zea mays]
          Length = 515

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKRE 223
             T RSG  H P FT  VE++G+        +K+ AE+ AA+     LK+ 
Sbjct: 106 YTTERSGVGHLPVFTCTVELAGITFTGDHAKNKKQAEKNAASAAWSALKQL 156


>gi|170101206|ref|XP_001881820.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164643175|gb|EDR07428.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 157

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 29/105 (27%)

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            +S + +       +           Q    S +    A       A   F         
Sbjct: 17  AQSKLVSQQCRNYSQWNAPAKLSKENQEWPWSVETSALAAIYTLPSALHLFTGYLPQYAL 76

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             SG  H P +T    + G     G   SKR A+  AA + +   
Sbjct: 77  TVSGTRHQPIWTCAASLDGQMIGLGEGRSKRVAQDEAARQAIINL 121


>gi|226506372|ref|NP_001150455.1| LOC100284085 [Zea mays]
 gi|195639400|gb|ACG39168.1| bcpLH protein [Zea mays]
          Length = 434

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220
                 T + GP H+P F   V ++           S++AAEQ AA   L
Sbjct: 52  PTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSRKAAEQSAAEVAL 101



 Score = 47.2 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F   VEI G+        +K+ AE  AA   L
Sbjct: 155 FVCSVEIGGILYIGAAARTKKEAEIKAARTAL 186


>gi|73696282|gb|AAZ80928.1| nuclear RNase III Drosha [Macaca mulatta]
          Length = 174

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILG 52
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ 
Sbjct: 120 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQ 169


>gi|170051377|ref|XP_001861735.1| ribonuclease iii [Culex quinquefasciatus]
 gi|167872672|gb|EDS36055.1| ribonuclease iii [Culex quinquefasciatus]
          Length = 217

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                 V   +GP +   +T+ V   G   A     S + A+  AA + L+ 
Sbjct: 104 KRSATCVIECNGPTNTRVYTMAVYFRGKHLACSNGHSIQEAKINAAKQALEN 155


>gi|170051370|ref|XP_001861732.1| ribonuclease iii [Culex quinquefasciatus]
 gi|167872669|gb|EDS36052.1| ribonuclease iii [Culex quinquefasciatus]
          Length = 186

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                 V   +GP +   +T+ V   G   A     S + A+  AA + L+ 
Sbjct: 73  KRSATCVIECNGPTNTRVYTMAVYFRGKHLACSNGHSIQEAKINAAKQALEN 124


>gi|292609374|ref|XP_694356.4| PREDICTED: hypothetical protein LOC565999 [Danio rerio]
          Length = 1079

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213
            +   + L E  + K    PE+ +   SGPDH   F   V ++G     Q    +K+ A+ 
Sbjct: 988  KHPVSALMEMCNKKKWPQPEFVMVHHSGPDHRKNFLFKVVVNGSDYQPQSASPNKKHAKA 1047

Query: 214  VAAAEVLKREG 224
            +AA   L+  G
Sbjct: 1048 MAATVALQAMG 1058


>gi|168021275|ref|XP_001763167.1| dsRNA-specific nuclease dicer and related ribonuclease
           [Physcomitrella patens subsp. patens]
 gi|162685650|gb|EDQ72044.1| dsRNA-specific nuclease dicer and related ribonuclease
           [Physcomitrella patens subsp. patens]
          Length = 961

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 78/245 (31%), Gaps = 42/245 (17%)

Query: 20  RSLLE---KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           + L      ALT +S   ++  SYER E L D  L  ++S  LF  F S  EG+L+    
Sbjct: 503 KRLYVDSVLALTAASCQETF--SYERAELLSDAYLEWVVSHRLFLKFPSKHEGQLTRMRQ 560

Query: 77  SLVSAETCSQVARELDLASFIR---------------------------VSSDLRKDVCS 109
            +VS     Q A E  L S+I+                              + + +V  
Sbjct: 561 KIVSNSVLYQHALEKGLQSYIQADRFAPSRWAAPGVPPAFDEDLRDGDDSDKESKPEVER 620

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR-----ALKSGKFRRDAKTELQEW 164
            +  I   + +   AA+  +    VA         +        +  +         +  
Sbjct: 621 EVVEIVGRLTDLRAAAVNNENFARVAVKHSYHLHLRHGSTALETQVFEPLLQPMVSPETL 680

Query: 165 AHAKFGVTPEYKVTFRSGPDH-----DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                    E       G ++     +   TV V + G+         K+ A+++ A   
Sbjct: 681 PIHPVRGLQERCQQEAEGLEYKVSRAESVATVEVYVDGVQIGSTQSAQKKMAQKLGARNA 740

Query: 220 LKREG 224
           L +  
Sbjct: 741 LVKLK 745


>gi|208690885|gb|ACI31218.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Erythrocebus patas]
          Length = 550

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V  +   +   GP+    F    +I     + G   +K+ A+Q+AA   L
Sbjct: 116 VNYKQCTSGVHGPEG---FHYKCKIGEKEYSIGTGSTKQEAKQLAAKLAL 162


>gi|208690873|gb|ACI31212.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Chlorocebus aethiops]
          Length = 550

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V  +   +   GP+    F    +I     + G   +K+ A+Q+AA   L
Sbjct: 116 VNYKQCTSGVHGPEG---FHYKCKIGEKEYSIGTGSTKQEAKQLAAKLAL 162


>gi|54289574|gb|AAV32090.1| interferon-induced dsRNA-dependent protein kinase [Chlorocebus
           aethiops]
          Length = 550

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V  +   +   GP+    F    +I     + G   +K+ A+Q+AA   L
Sbjct: 116 VNYKQCTSGVHGPEG---FHYKCKIGEKEYSIGTGSTKQEAKQLAAKLAL 162


>gi|332022933|gb|EGI63201.1| Microprocessor complex subunit DGCR8 [Acromyrmex echinatior]
          Length = 650

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 35/143 (24%), Gaps = 6/143 (4%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVV-----ESLIAALYLDGGIEVAGTFVD 140
              + + +  F   S+  +                    + +   +    G   +    D
Sbjct: 294 FRFKSIKVMRFQSWSARRKFTKIKKHRKQLERPTLPDGTKLITFPVSSSSGSGSSHIVDD 353

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
              +            +   +                         P ++ VV I+ +  
Sbjct: 354 NGQRPAKHWIMNPSGKSYVCILHEYVQHALKKQPTYKFKELENAATP-YSAVVCINDMEY 412

Query: 201 AQGMDCSKRAAEQVAAAEVLKRE 223
             G   SK+ A+  AA + L+  
Sbjct: 413 GSGFGSSKKQAKANAARKTLEIL 435


>gi|242081359|ref|XP_002445448.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
 gi|241941798|gb|EES14943.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
          Length = 298

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
              P        G  H P+F   VE+ G   +  G    K+ AEQ AA    +  
Sbjct: 60  YKKPPVYKVESEGASHQPKFRCTVEVGGQQFSSAGSFDRKKEAEQDAARIAYEIL 114



 Score = 43.8 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F  +V   G +       +K+ AEQ AA  V+K  
Sbjct: 166 FAAIVVFDGNSYTGESARNKKDAEQNAARAVIKSI 200


>gi|189236536|ref|XP_975506.2| PREDICTED: similar to neuron-specific staufen [Tribolium castaneum]
          Length = 425

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           + V   SG  H   F    ++      +G   SK+ +++VAA ++L+
Sbjct: 249 FNVISESGKPHQRNFVTECKLGDYV-TEGEGRSKKESKRVAAEKMLQ 294



 Score = 39.1 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 9/70 (12%), Positives = 17/70 (24%), Gaps = 1/70 (1%)

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +  +      K                  +   Y +    GP H   F V + +     
Sbjct: 1   MFSSESQNNVTKTPEKNIVATIYELAQFNEIECSYTLISEEGPPHAKIFKVSLHLGDELY 60

Query: 201 AQGMDCSKRA 210
            +G   S + 
Sbjct: 61  -EGSGSSLKK 69


>gi|270006021|gb|EFA02469.1| hypothetical protein TcasGA2_TC008157 [Tribolium castaneum]
          Length = 480

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           + V   SG  H   F    ++      +G   SK+ +++VAA ++L+
Sbjct: 249 FNVISESGKPHQRNFVTECKLGDYV-TEGEGRSKKESKRVAAEKMLQ 294



 Score = 39.1 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 9/70 (12%), Positives = 17/70 (24%), Gaps = 1/70 (1%)

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +  +      K                  +   Y +    GP H   F V + +     
Sbjct: 1   MFSSESQNNVTKTPEKNIVATIYELAQFNEIECSYTLISEEGPPHAKIFKVSLHLGDELY 60

Query: 201 AQGMDCSKRA 210
            +G   S + 
Sbjct: 61  -EGSGSSLKK 69


>gi|308081633|ref|NP_001183890.1| hypothetical protein LOC100502483 [Zea mays]
 gi|238015288|gb|ACR38679.1| unknown [Zea mays]
          Length = 520

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKRE 223
             T RSG  H P FT  VE++G+  A     +K+ AE+ AA+     LK+ 
Sbjct: 106 YTTERSGLGHLPVFTCTVELAGITFAGDPAKNKKQAEKNAASAAWSALKQL 156


>gi|168048373|ref|XP_001776641.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
 gi|162671933|gb|EDQ58477.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
          Length = 1053

 Score = 53.4 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 30/81 (37%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
            +               L +    + GV+     T RSGP H P FT  VE++ +  +  
Sbjct: 330 WEEQGMRVWDETGVCKNLLQETAQRAGVSLPVYATTRSGPGHLPVFTCTVEVASMTFSGE 389

Query: 204 MDCSKRAAEQVAAAEVLKREG 224
              +K+ AE+ AA        
Sbjct: 390 AAKTKKQAEKNAAMAAWSALK 410



 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 21/77 (27%), Gaps = 1/77 (1%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDC 206
               +          +    +           R GPDH PRF   V  +G          
Sbjct: 221 WCGERVVAGMYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCN 280

Query: 207 SKRAAEQVAAAEVLKRE 223
           + R AE  AA   L   
Sbjct: 281 TLRQAEHAAAEVALNTL 297


>gi|258571479|ref|XP_002544543.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237904813|gb|EEP79214.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 387

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 75/208 (36%), Gaps = 17/208 (8%)

Query: 17  FANRSLLEKALTH-----SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
             +++L     TH     +    +   SY+RLE LGD  L ++ + L+++ F S   G +
Sbjct: 131 IKDKTLETAVFTHQGEIPAHAPPAIHHSYDRLEILGDAYLEVIATRLIWDRFQSLPPGRI 190

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           S     LV  ET +Q +        +RVS ++R         ++ DV E+  AA+ L   
Sbjct: 191 SQIRELLVKNETLAQFSERFKFDQLVRVSPEIRSQ-PKRWVKVKGDVFEAYAAAVILSDP 249

Query: 132 IEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-- 187
           I       D   +         +    A    +  A    G   + +    S P      
Sbjct: 250 INGFNLVEDWLVRLWGPILDRVQPEDQATHHKESLAKRVMGKGVKLRYIDESPPITRKGG 309

Query: 188 --RFTVVVEISG-----LAPAQGMDCSK 208
              F + V ++G          G   +K
Sbjct: 310 MATFFIGVYLTGWGWESQHLGSGTGLNK 337


>gi|195108545|ref|XP_001998853.1| GI23404 [Drosophila mojavensis]
 gi|193915447|gb|EDW14314.1| GI23404 [Drosophila mojavensis]
          Length = 655

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 36/138 (26%), Gaps = 1/138 (0%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
              +E+ +  F   ++  +                     L     +  +G+      + 
Sbjct: 311 FRFKEIRVLRFRSWNARRKFTKNRKHIKNIQRPTLPDGTKLIKFPILAASGSEGSTNSRG 370

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
           R          +   +          T              P ++  V ++ L    G  
Sbjct: 371 RKEWIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVNNLKYGTGYG 429

Query: 206 CSKRAAEQVAAAEVLKRE 223
            SK+ A+  AA E L+  
Sbjct: 430 TSKKQAKSEAARETLEIL 447


>gi|156373220|ref|XP_001629431.1| predicted protein [Nematostella vectensis]
 gi|156216431|gb|EDO37368.1| predicted protein [Nematostella vectensis]
          Length = 221

 Score = 53.4 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           FT  V I     A G   +K+ A++ AA   L    
Sbjct: 125 FTCAVIIQDKLVATGEASNKKDAKRNAAENALDVLK 160


>gi|195390456|ref|XP_002053884.1| GJ23095 [Drosophila virilis]
 gi|194151970|gb|EDW67404.1| GJ23095 [Drosophila virilis]
          Length = 659

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 1/138 (0%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
              + + +  F   ++  +                     L     +  +G       + 
Sbjct: 315 FRFKVIRVLRFRSWNARRKFTKNRKHIKNIQRPTLPDGTKLIKFPILAASGAEGATNPRG 374

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
           R          +   +          T              P ++  V ++ L    G  
Sbjct: 375 RKEWIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVNNLKYGTGYG 433

Query: 206 CSKRAAEQVAAAEVLKRE 223
            SK+ A+  AA E L+  
Sbjct: 434 TSKKQAKSEAARETLEIL 451


>gi|224143644|ref|XP_002336064.1| predicted protein [Populus trichocarpa]
 gi|222869865|gb|EEF06996.1| predicted protein [Populus trichocarpa]
          Length = 61

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 19/44 (43%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             T +SG  H P F   VEI G+        +K+ AE  AA   
Sbjct: 12  YFTEKSGEAHAPTFISTVEIDGVIFTGKEARTKKQAEMSAAKTA 55


>gi|294937286|ref|XP_002782038.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239893277|gb|EER13833.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 452

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 14  GYAFA-NRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           GY F  +  LL +A TH+S++  S   S ERLE++GD +LG ++ + L+    +     +
Sbjct: 253 GYEFRRHPWLLMEAFTHASVAAVSPSYSNERLEWIGDAVLGAVVWSKLYEEGRATLSSFI 312

Query: 72  SVRFNSL 78
               N  
Sbjct: 313 DYTCNFH 319


>gi|294881178|ref|XP_002769283.1| hypothetical protein Pmar_PMAR007697 [Perkinsus marinus ATCC 50983]
 gi|239872561|gb|EER02001.1| hypothetical protein Pmar_PMAR007697 [Perkinsus marinus ATCC 50983]
          Length = 798

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 14  GYAFA-NRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           GY F  +  LL +A TH+S++  S   S ERLE++GD +LG ++ + L+    +     +
Sbjct: 560 GYEFRRHPWLLMEAFTHASVAAVSPSYSNERLEWIGDAVLGAVVWSKLYEEGRATLSSFI 619

Query: 72  SVRFNSL 78
               N  
Sbjct: 620 DYTCNFH 626


>gi|87117463|gb|ABD20025.1| Rnc [Shigella dysenteriae]
          Length = 178

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 3/162 (1%)

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
             +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+     K      
Sbjct: 1   SYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60

Query: 112 TSIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
            SI AD VE+LI  ++LD  I+            +   +  G  ++D KT LQE+   + 
Sbjct: 61  ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 LPLPTYMVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162


>gi|320545024|ref|NP_001188796.1| loquacious, isoform D [Drosophila melanogaster]
 gi|318068436|gb|ADV37046.1| loquacious, isoform D [Drosophila melanogaster]
          Length = 359

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    +    P Y+     G  H+  FT+   I       G   SK+ A+++A
Sbjct: 250 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLA 308

Query: 216 AAEVLKRE 223
           A  +  R 
Sbjct: 309 AHRMWMRL 316



 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223
           TP Y++    G  H+P F   V          A G   SK+ A+  AA  ++ + 
Sbjct: 150 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 204


>gi|195472607|ref|XP_002088591.1| GE18652 [Drosophila yakuba]
 gi|194174692|gb|EDW88303.1| GE18652 [Drosophila yakuba]
          Length = 465

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    +    P Y+     G  H+  FT+   I       G   SK+ A+++A
Sbjct: 250 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLA 308

Query: 216 AAEVLKRE 223
           A  +  R 
Sbjct: 309 AHRMWMRL 316



 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223
           TP Y++    G  H+P F   V          A G   SK+ A+  AA  ++ + 
Sbjct: 150 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 204


>gi|194860648|ref|XP_001969628.1| GG23848 [Drosophila erecta]
 gi|190661495|gb|EDV58687.1| GG23848 [Drosophila erecta]
          Length = 464

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    +    P Y+     G  H+  FT+   I       G   SK+ A+++A
Sbjct: 249 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLA 307

Query: 216 AAEVLKRE 223
           A  +  R 
Sbjct: 308 AHRMWMRL 315



 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223
           TP Y++    G  H+P F   V          A G   SK+ A+  AA  ++ + 
Sbjct: 149 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 203


>gi|85724940|ref|NP_001033903.1| loquacious, isoform C [Drosophila melanogaster]
 gi|63376297|gb|AAY40789.1| loquacious [Drosophila melanogaster]
 gi|84795302|gb|ABC65897.1| loquacious, isoform C [Drosophila melanogaster]
          Length = 383

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    +    P Y+     G  H+  FT+   I       G   SK+ A+++A
Sbjct: 250 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLA 308

Query: 216 AAEVLKRE 223
           A  +  R 
Sbjct: 309 AHRMWMRL 316



 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223
           TP Y++    G  H+P F   V          A G   SK+ A+  AA  ++ + 
Sbjct: 150 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 204


>gi|19921250|ref|NP_609646.1| loquacious, isoform B [Drosophila melanogaster]
 gi|17945270|gb|AAL48692.1| RE14437p [Drosophila melanogaster]
 gi|22946404|gb|AAF53295.2| loquacious, isoform B [Drosophila melanogaster]
 gi|71733132|gb|AAZ40191.1| R3D1-L [Drosophila melanogaster]
 gi|220947980|gb|ACL86533.1| loqs-PB [synthetic construct]
 gi|220957210|gb|ACL91148.1| loqs-PB [synthetic construct]
          Length = 465

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    +    P Y+     G  H+  FT+   I       G   SK+ A+++A
Sbjct: 250 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLA 308

Query: 216 AAEVLKRE 223
           A  +  R 
Sbjct: 309 AHRMWMRL 316



 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223
           TP Y++    G  H+P F   V          A G   SK+ A+  AA  ++ + 
Sbjct: 150 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 204


>gi|24584110|ref|NP_723813.1| loquacious, isoform A [Drosophila melanogaster]
 gi|7298056|gb|AAF53296.1| loquacious, isoform A [Drosophila melanogaster]
 gi|71733134|gb|AAZ40192.1| R3D1-S [Drosophila melanogaster]
          Length = 419

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    +    P Y+     G  H+  FT+   I       G   SK+ A+++A
Sbjct: 250 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLA 308

Query: 216 AAEVLKRE 223
           A  +  R 
Sbjct: 309 AHRMWMRL 316



 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223
           TP Y++    G  H+P F   V          A G   SK+ A+  AA  ++ + 
Sbjct: 150 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 204



 Score = 37.2 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/187 (11%), Positives = 47/187 (25%), Gaps = 6/187 (3%)

Query: 47  GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
           GD            +       G L              +   E+ L      +      
Sbjct: 231 GDGNANATGGGDASDKTVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSIL 290

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQ 162
               M   ++  +   +AA  +   ++          D    +   +    + +    ++
Sbjct: 291 NYREMGKGKSKKIAKRLAAHRMWMRLQETPIDSGKISDSICGELEGEKTCLKNNKIDYIK 350

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA--QGMDCSKRAAEQVAAAEVL 220
                      E             +F  +V++S L      G   +   A++ AA   L
Sbjct: 351 LLGEIATENQFEVTYVDIEEKTFSGQFQCLVQLSTLPVGVCHGSGPTAADAQRHAAQNAL 410

Query: 221 KREGIWT 227
           +   I T
Sbjct: 411 EYLKIMT 417


>gi|321461921|gb|EFX72948.1| hypothetical protein DAPPUDRAFT_253785 [Daphnia pulex]
          Length = 222

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 8/56 (14%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE------QVAAAEVLKR-EGIW 226
               G  H   FT  V I      +G   SK+ AE        AA   L+  EG+W
Sbjct: 140 VKEEGSPHLLIFTARVVIGDQPF-EGTGSSKKQAEEAESKKNEAAQAALQSTEGVW 194



 Score = 43.8 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
               +     SGP H   +   V ++G       D +K+ A+   A  +L
Sbjct: 7   KPNIFYDIAASGPPHARIYVASVTLNGKTY-SAKDTTKKTAKAKVARMIL 55


>gi|312220987|emb|CBY00928.1| hypothetical protein [Leptosphaeria maculans]
          Length = 495

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 66/216 (30%), Gaps = 29/216 (13%)

Query: 19  NRSLLEKA-LTHSSISHSYQE-----------SYERLEFLGDRILGLLISTLLFNHFDSA 66
           N   L +A  TH S   +  +            YERLE+ GD  + L+ +  L N F   
Sbjct: 151 NEPHLHQAVFTHRSAVINPGDLVAMSKLDLGLDYERLEYSGDAYIELIATRALCNRFPQV 210

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
              EL      LV   T S+ +        +     +          + AD+ E+ IA L
Sbjct: 211 DVPELCSWRERLVENSTLSKFSDAYGFPDRLSHRLFVE-RGSKAWMKVSADIFEAYIAGL 269

Query: 127 YLDGGIEVAGTFVDKYWKQRALK---------SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
                        +   +  A +              +D  ++L            +  +
Sbjct: 270 VESDPEHGFHIAEEWLTELWAPQLLSFQAKVIENPKAKDELSKLVMCKGVTLQYREDKPM 329

Query: 178 TFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSK 208
           TF +G     R+ + + +            G   +K
Sbjct: 330 TFDTGSI--QRYYIGIYLTGWGYEDEWIGSGEGQNK 363


>gi|75858914|ref|XP_868797.1| hypothetical protein AN9415.2 [Aspergillus nidulans FGSC A4]
 gi|40747690|gb|EAA66846.1| hypothetical protein AN9415.2 [Aspergillus nidulans FGSC A4]
          Length = 1073

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
             +  L     TH  ++   + +Y+RLE LGD  + L+ + L++N F     G +S    
Sbjct: 115 IKDDRLERAVFTHPGVAKDSRTTYDRLEILGDAYIELISTKLIWNKFQHIPSGRISQIRE 174

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            LV  ET ++ A +  +            +        + D+ E+ +AA+ L      + 
Sbjct: 175 LLVKNETLAEYATQYGIDK-KASVPAELYNQPKRWIKTKGDIFEAYVAAVILSHPDGYSV 233

Query: 137 TFVD 140
               
Sbjct: 234 AETW 237


>gi|325120999|ref|NP_001191404.1| staufen [Aplysia californica]
 gi|37728097|gb|AAO38741.1| staufen [Aplysia californica]
          Length = 618

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   A+    P Y +    G      F V VE+       G   +K+ A++ A
Sbjct: 358 NPISRLIQIMQAQKKKEPVYTLVTERGLPRRREFIVQVEVEDKT-CPGSGPNKKLAKRAA 416

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 417 AEAMLQLLG 425



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 1/90 (1%)

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
                  Y +      G + +     ++     ++             P  +  F V + 
Sbjct: 125 EPQQPPYYHQPNMDFRGLYNQRYHQYMRASRDPRYRGNGVLWPLRYHYPRMNRAFYVSLR 184

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           + G     G   +++AA   AA + L+   
Sbjct: 185 V-GHREFIGDGPTRQAARHNAAQKALRILK 213


>gi|325296829|ref|NP_001191656.1| neuron-specific staufen [Aplysia californica]
 gi|59323978|gb|AAW84263.1| neuron-specific staufen [Aplysia californica]
          Length = 950

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   A+    P Y +    G      F V VE+       G   +K+ A++ A
Sbjct: 690 NPISRLIQIMQAQKKKEPVYTLVTERGLPRRREFIVQVEVEDKT-CPGSGPNKKLAKRAA 748

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 749 AEAMLQLLG 757



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 1/90 (1%)

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
                  Y +      G + +     ++     ++             P  +  F V + 
Sbjct: 457 EPQQPPYYHQPNMDFRGLYNQRYHQYMRASRDPRYRGNGVLWPLRYHYPRMNRAFYVSLR 516

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           + G     G   +++AA   AA + L+   
Sbjct: 517 V-GHREFIGDGPTRQAARHNAAQKALRILK 545


>gi|288804124|gb|ADC53790.1| dsRNA-binding interferon resistance protein [Pseudocowpox virus]
          Length = 182

 Score = 53.0 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 20/54 (37%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH P FT  + +SG   A     SK+ A   A    L
Sbjct: 118 MITHRHLEFCETRSGGQDHCPNFTCTIMVSGKVIATADGTSKKMARHAACVAAL 171


>gi|218283083|ref|ZP_03489178.1| hypothetical protein EUBIFOR_01764 [Eubacterium biforme DSM 3989]
 gi|218216152|gb|EEC89690.1| hypothetical protein EUBIFOR_01764 [Eubacterium biforme DSM 3989]
          Length = 81

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 14 GYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62
          GY + N  +  +A THSS ++ +    +  ERLEF+GD +L +  +T LF +
Sbjct: 12 GYKYKNEDIYLEACTHSSYANEHHRQMDDNERLEFMGDSVLQIWSATQLFFN 63


>gi|255543655|ref|XP_002512890.1| double-stranded RNA binding protein, putative [Ricinus communis]
 gi|223547901|gb|EEF49393.1| double-stranded RNA binding protein, putative [Ricinus communis]
          Length = 477

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKRE 223
             T RSGP H P FT  VE++G+        +K+ AE+ AA      LKR 
Sbjct: 109 YTTIRSGPGHVPTFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 159



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 21/68 (30%), Gaps = 1/68 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAE 212
             D      +    +           R GPDH PRF   V  +G          + R AE
Sbjct: 1   MADMFKNQLQELAQRSCFNLPSYACVREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAE 60

Query: 213 QVAAAEVL 220
             AA   L
Sbjct: 61  HAAAEVAL 68


>gi|238480134|ref|NP_001154686.1| DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4); double-stranded RNA
           binding / protein binding [Arabidopsis thaliana]
 gi|197267565|dbj|BAG69145.1| dsRNA-binding protein [Arabidopsis thaliana]
 gi|332646874|gb|AEE80395.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
          Length = 329

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            +  T  SGP H P FT  VE +G   +     +K+ AE  AA   
Sbjct: 99  PFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVA 144



 Score = 39.5 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219
            R GP H PRF   V   G          + ++AE  AA   
Sbjct: 26  EREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAAAKIA 67


>gi|22331912|ref|NP_191839.2| DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4); double-stranded RNA
           binding / protein binding [Arabidopsis thaliana]
 gi|42572769|ref|NP_974480.1| DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4); double-stranded RNA
           binding / protein binding [Arabidopsis thaliana]
 gi|75244610|sp|Q8H1D4|DRB4_ARATH RecName: Full=Double-stranded RNA-binding protein 4; AltName:
           Full=dsRNA-binding protein 4; Short=AtDRB4
 gi|23297784|gb|AAN13025.1| unknown protein [Arabidopsis thaliana]
 gi|332646872|gb|AEE80393.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
 gi|332646873|gb|AEE80394.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
          Length = 355

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            +  T  SGP H P FT  VE +G   +     +K+ AE  AA   
Sbjct: 99  PFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVA 144



 Score = 39.5 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219
            R GP H PRF   V   G          + ++AE  AA   
Sbjct: 26  EREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAAAKIA 67


>gi|18389232|gb|AAL67059.1| unknown protein [Arabidopsis thaliana]
          Length = 355

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            +  T  SGP H P FT  VE +G   +     +K+ AE  AA   
Sbjct: 99  PFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVA 144



 Score = 39.5 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219
            R GP H PRF   V   G          + ++AE  AA   
Sbjct: 26  EREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAAAKIA 67


>gi|241600828|ref|XP_002405209.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215502478|gb|EEC11972.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 1095

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
                         +GP H  RF   V + G      G   +K+ A+  AA + L+  
Sbjct: 13  CGKNKVTPQYEFKNTGPRHRQRFLCEVRVEGYDYVGAGNSTNKKDAQTNAARDFLQYL 70


>gi|325073735|gb|ADY76788.1| PP120 [Orf virus]
          Length = 183

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 22/54 (40%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH PRFT  + ISG   A     SK+ A   A A  L
Sbjct: 119 MMTHRPLEFCETRSGGEDHCPRFTCTITISGKVVAAANGASKKLARHAACASAL 172


>gi|82582943|gb|ABB84397.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 22/54 (40%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH PRFT  + ISG   A     SK+ A   A A  L
Sbjct: 102 MMTHRPLEFCETRSGGEDHCPRFTCTITISGKVVAAANGASKKLARHAACASAL 155


>gi|82582925|gb|ABB84388.1| interferon resistance protein [Orf virus]
 gi|82582927|gb|ABB84389.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 22/54 (40%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH PRFT  + ISG   A     SK+ A   A A  L
Sbjct: 102 MMTHRPLEFCETRSGGEDHCPRFTCTITISGKVVAAANGASKKLARHAACASAL 155


>gi|82582941|gb|ABB84396.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 22/54 (40%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH PRFT  + ISG   A     SK+ A   A A  L
Sbjct: 102 MMTHRPLEFCETRSGGEDHCPRFTCTITISGKVVAAANGASKKLARHAACASAL 155


>gi|2415555|emb|CAA04303.1| ribonuclease III [Campylobacter jejuni]
          Length = 73

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
          YAF + +    ALTH S   SY  + ERL  +GD +L L++   LF++          + 
Sbjct: 1  YAFPDTNHFIPALTHKSFKKSY--NNERLVLIGDAVLDLVVGEYLFHNIRQRCRRRFILS 58

Query: 75 FNSLVSAE 82
             +V  E
Sbjct: 59 LEQVVVNE 66


>gi|195578966|ref|XP_002079333.1| loquacious [Drosophila simulans]
 gi|194191342|gb|EDX04918.1| loquacious [Drosophila simulans]
          Length = 464

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    +    P Y+     G  H+  FT+   I       G   SK+ A+++A
Sbjct: 249 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLA 307

Query: 216 AAEVLKRE 223
           A  +  R 
Sbjct: 308 AHRMWVRL 315



 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223
           TP Y++    G  H+P F   V          A G   SK+ A+  AA  ++ + 
Sbjct: 149 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 203


>gi|195351293|ref|XP_002042169.1| GM10477 [Drosophila sechellia]
 gi|194123993|gb|EDW46036.1| GM10477 [Drosophila sechellia]
          Length = 464

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    +    P Y+     G  H+  FT+   I       G   SK+ A+++A
Sbjct: 249 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLA 307

Query: 216 AAEVLKRE 223
           A  +  R 
Sbjct: 308 AHRMWVRL 315



 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223
           TP Y++    G  H+P F   V          A G   SK+ A+  AA  ++ + 
Sbjct: 149 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 203


>gi|194765827|ref|XP_001965027.1| GF23153 [Drosophila ananassae]
 gi|190617637|gb|EDV33161.1| GF23153 [Drosophila ananassae]
          Length = 472

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    +    P Y+     G  H+  FT+   I       G   SK+ A+++A
Sbjct: 257 NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLA 315

Query: 216 AAEVLKRE 223
           A  +  R 
Sbjct: 316 AHRMWVRL 323



 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223
           TP Y++    G  H+P F   V          A G   SK+ A+  AA  ++ + 
Sbjct: 154 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 208


>gi|33415077|gb|AAQ18046.1| double-stranded RNA-binding protein [Bovine papular stomatitis
           virus]
          Length = 182

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH P FT  + +SG   A     SK+ A   A A  L
Sbjct: 118 MITHRPLEFCETRSGGQDHCPNFTCTIMVSGKVIATADGTSKKMARHAACATAL 171


>gi|312379836|gb|EFR25996.1| hypothetical protein AND_08191 [Anopheles darlingi]
          Length = 1167

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
            +   L      +  ++  ++V    GP H   F    ++ G    +G    K+ +++ A
Sbjct: 733 KSPISLVHEMAVQRQLSVVFEVISEKGPPHMTVFVTQCKV-GTIVTEGEGTGKKLSKKRA 791

Query: 216 AAEVLKRE 223
           A ++L++ 
Sbjct: 792 AEKMLEQL 799



 Score = 51.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
             +      L         +  +Y++T  +GP H  RFTV +++           S + A
Sbjct: 344 NMKEKTTMCLVNELARYNKIQHQYRLTGETGPAHSKRFTVTLKLGDEEYTS-EGASIKKA 402

Query: 212 EQVAAAEVL 220
           +  AA + +
Sbjct: 403 QHKAAGDAI 411



 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            +  + L +   A+    P Y +     P      +FT+ V  +G   A G+  +K+AA+
Sbjct: 877 ENPISRLMQIQQARKEKQPVYALVEGDRPTTGRRKQFTIEVTAAGKR-AVGVGMTKKAAK 935

Query: 213 QVAAAEVLKREG 224
             AA  +L   G
Sbjct: 936 WTAAEALLIELG 947


>gi|87117496|gb|ABD20047.1| Rnc [Shigella dysenteriae]
          Length = 178

 Score = 52.6 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 3/162 (1%)

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
             +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+     K      
Sbjct: 1   SYVIANALYHRFPCVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60

Query: 112 TSIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
            SI AD VE+LI  ++LD  I+            +   +  G  ++D KT LQE+   + 
Sbjct: 61  ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162


>gi|327291984|ref|XP_003230700.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like,
           partial [Anolis carolinensis]
          Length = 404

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            E+++  + GP HDP+F   V+I        +  SK+ A+Q+AA   ++  
Sbjct: 99  CEFQLLAQDGPPHDPKFKYCVKIGDQVFPAVVSNSKKGAKQMAAEAAIRGL 149



 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             ++GP HDP+F    ++ G         SK+  +Q AA   L+  
Sbjct: 214 IEQTGPPHDPKFVFQAKVGGRWFPAVTAHSKKQGKQEAADAALRVL 259



 Score = 39.5 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F     I G         SK+ A+Q AAA  ++  
Sbjct: 1   FKFQAVIDGRRFPPAEAGSKKLAKQEAAAHAMRIL 35


>gi|159468548|ref|XP_001692436.1| dicer-like protein [Chlamydomonas reinhardtii]
 gi|158278149|gb|EDP03914.1| dicer-like protein [Chlamydomonas reinhardtii]
          Length = 3556

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 15   YAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            Y F    L  +ALTH S   +      Y+RLEFLGD ++G ++S   +          ++
Sbjct: 3277 YCFRRPELCLQALTHVSHPRAAGCGGGYQRLEFLGDAVMGTVVS--FWLFRAGGSAEAMT 3334

Query: 73   VRFNSLVSAETCSQVARELDLASFIR 98
             R  +LVS    +  A  L L   +R
Sbjct: 3335 ARRKALVSNGPLAAAAVCLGLQRHLR 3360


>gi|154149851|ref|YP_001403469.1| ribonuclease III [Candidatus Methanoregula boonei 6A8]
 gi|153998403|gb|ABS54826.1| ribonuclease III [Methanoregula boonei 6A8]
          Length = 154

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61
            S LE R+G+   +R++L+ ALT  +  +       +  + L  +GD +LG +++T L+ 
Sbjct: 5   LSELETRLGFTIKDRTILDAALTRQAYINENPTAGNDCMDPLATVGDAVLGAVVATRLYE 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 +G L+      V+ +     A +  L  FIR      K+      S   D    
Sbjct: 65  S-GIRDKGTLTSEKIRGVNRDKTRAFAEKFQLHKFIRWGKGEEKNKVWEQGSQAFDAAFE 123

Query: 122 LIAALYL 128
            +     
Sbjct: 124 ALIGAVF 130


>gi|328713081|ref|XP_003244986.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A-like isoform 4 [Acyrthosiphon
           pisum]
          Length = 443

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +G  H+P F   V ++    A G   SK+ A++ AA  +L + 
Sbjct: 153 ISITGHVHNPVFRF-VAVNDGIYAYGDGLSKKEAKKNAAIALLDKL 197



 Score = 38.0 bits (86), Expect = 0.98,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
               ++ +             H+  ++VV  +  L  + G   +K+AA++ AA  +
Sbjct: 245 CMARRWELPDYDFPQDERNEAHNVWYSVVCSLRDLK-SVGEGKTKQAAKRQAAHIM 299


>gi|328713075|ref|XP_001942593.2| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A-like isoform 1 [Acyrthosiphon
           pisum]
 gi|328713077|ref|XP_003244984.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A-like isoform 2 [Acyrthosiphon
           pisum]
 gi|328713079|ref|XP_003244985.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A-like isoform 3 [Acyrthosiphon
           pisum]
          Length = 427

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +G  H+P F   V ++    A G   SK+ A++ AA  +L + 
Sbjct: 137 ISITGHVHNPVFRF-VAVNDGIYAYGDGLSKKEAKKNAAIALLDKL 181



 Score = 38.0 bits (86), Expect = 0.98,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
               ++ +             H+  ++VV  +  L  + G   +K+AA++ AA  +
Sbjct: 229 CMARRWELPDYDFPQDERNEAHNVWYSVVCSLRDLK-SVGEGKTKQAAKRQAAHIM 283


>gi|322518582|sp|B7E321|DRB5_ORYSJ RecName: Full=Double-stranded RNA-binding protein 5; AltName:
           Full=dsRNA-binding protein 2; Short=OsDRB2; AltName:
           Full=dsRNA-binding protein 5
 gi|215765071|dbj|BAG86768.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 404

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKREGIWT 227
             T RSGP H P F+  VE++G++ A     +K+ AE+ AA      LK+  I T
Sbjct: 106 YTTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQSNIRT 160



 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
             +    V  R GPDH PRF   V  +G          + R AE  AA   L R 
Sbjct: 14  CFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAAEVALARL 68


>gi|255574401|ref|XP_002528114.1| double-stranded RNA binding protein, putative [Ricinus communis]
 gi|223532503|gb|EEF34293.1| double-stranded RNA binding protein, putative [Ricinus communis]
          Length = 786

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +F+V V  +G     GM  +++ A Q AA   L+
Sbjct: 635 QFSVEVLFTGEKIGIGMGKTRKDAHQQAAENALR 668


>gi|118096265|ref|XP_414079.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 518

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 39/172 (22%), Gaps = 1/172 (0%)

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           +      +         + ++          + A+   L               S     
Sbjct: 290 VMQDYIKYAVRYDNHYTNTKYCLCQMLREQLETAQGKKLHVAQSTQEICEAFEMSEFYEE 349

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
              + E+   +L      E          K       +      T               
Sbjct: 350 TTALFEAKKTSLETKKQDEDDQMEDPNVIKMAVRFDKREYPPQITPKMYLLEWCRKEKHP 409

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225
             V        D  F  VV ++         D SK+ AEQ AA   L+  G+
Sbjct: 410 QPVYETVQRPLDRLFCSVVTVADQKYRSALWDKSKKLAEQAAAIVCLRTLGV 461


>gi|255564369|ref|XP_002523181.1| conserved hypothetical protein [Ricinus communis]
 gi|223537588|gb|EEF39212.1| conserved hypothetical protein [Ricinus communis]
          Length = 970

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           +   +E+  +    G    K+ AEQ AA   L++ GI
Sbjct: 58  YRCSLELPEIFVVSGTFKKKKDAEQCAAEMALEKLGI 94


>gi|195445903|ref|XP_002070536.1| GK12111 [Drosophila willistoni]
 gi|194166621|gb|EDW81522.1| GK12111 [Drosophila willistoni]
          Length = 649

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 34/138 (24%), Gaps = 2/138 (1%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
              +E+ +  F   ++  +                       +   I  A        + 
Sbjct: 306 FKFKEIRVLRFRSWNARRKFTKNRKHIKNIQRPTLPD-GTKLIKFPILAACGEGATNPRG 364

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
           R          +   +          T              P ++  V ++ L    G  
Sbjct: 365 RKEWIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVNNLKYGTGYG 423

Query: 206 CSKRAAEQVAAAEVLKRE 223
            SK+ A+  AA E L+  
Sbjct: 424 TSKKQAKSEAARETLEVL 441


>gi|82582935|gb|ABB84393.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 21/54 (38%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH PRFT  + ISG         SK+ A   A A  L
Sbjct: 102 MMTHRPLEFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHNACASAL 155


>gi|242034167|ref|XP_002464478.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
 gi|241918332|gb|EER91476.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
          Length = 512

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKRE 223
             T RSG  H P FT  VE++G+        +K+ AE+ AA+     LK+ 
Sbjct: 106 YTTERSGLGHLPVFTCTVELAGITFTGDPAKNKKQAEKNAASAAWSALKQL 156


>gi|328852770|gb|EGG01913.1| hypothetical protein MELLADRAFT_66687 [Melampsora larici-populina
           98AG31]
          Length = 460

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 7   STLEKRIGYAFANRSLLEKALT--HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              ++++ Y F N +LL KALT  H             LE++GD +L +  +  +  H  
Sbjct: 330 EEAQEKLNYRFRNPNLLRKALTLDHPEFR--------LLEWIGDSVLDVWAAMEITKHRK 381

Query: 65  SAKEGELSVRFNSLVSAET 83
             K  + + RF  L + E 
Sbjct: 382 GHKVSKANERFMDLTNNEF 400


>gi|41057456|ref|NP_957929.1| ORF020 dsRNA-binding PKR inhibitor [Bovine papular stomatitis
           virus]
 gi|41018772|gb|AAR98377.1| ORF020 dsRNA-binding PKR inhibitor [Bovine papular stomatitis
           virus]
          Length = 195

 Score = 52.2 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+           +     G DH P FT  V +S    +    CSK+AA   A
Sbjct: 121 NPVSAVNEYCMRVHRPLVFQEC-RTGGHDHCPLFTCTVVVSNKTVSTASGCSKKAARNAA 179

Query: 216 AAEVL 220
             + L
Sbjct: 180 CTDAL 184


>gi|33415075|gb|AAQ18045.1| double-stranded RNA-binding protein [Tillquist parapoxvirus]
          Length = 180

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                   +  + + E+             T   G DH P FT  + +SG   A     S
Sbjct: 98  CVMRLKTLNPVSAVNEFCMITHRPLEF-CETRSGGQDHCPNFTCTIVVSGKLIATATGTS 156

Query: 208 KRAAEQVAAAEVL 220
           ++ A   A A  L
Sbjct: 157 RKLARHAACATAL 169


>gi|224084552|ref|XP_002307335.1| predicted protein [Populus trichocarpa]
 gi|222856784|gb|EEE94331.1| predicted protein [Populus trichocarpa]
          Length = 213

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 24/69 (34%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                 K  LQE+A       P Y+      P     F   VEI G+        +K+ A
Sbjct: 90  HETGLCKNLLQEYAQKMNYAIPLYECQKDETPGRGLVFKCTVEIGGIRYIGASAKTKKEA 149

Query: 212 EQVAAAEVL 220
           E  AA   L
Sbjct: 150 EIKAARTAL 158



 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKRE 223
             T + GP H+P F   V +  +         +++AAEQ AA   L   
Sbjct: 27  YETIKEGPSHEPSFRSTVIVKEVRYDSLPGFFNRKAAEQSAAEVALVEL 75


>gi|119571203|gb|EAW50818.1| hCG201528 [Homo sapiens]
          Length = 288

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 65  RAAEAAINILKANASTCFAVPDPLMPDPSKQPKNQLNLIGSLQELAIHHGWRLPEYTLSQ 124

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   SK+ A++ AA + L +
Sbjct: 125 EGGPAHKREYTTICRLE-SFMETGKGASKKQAKRNAAEKFLAK 166



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 37  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 75


>gi|326927225|ref|XP_003209793.1| PREDICTED: tRNA-dihydrouridine synthase 2-like, partial [Meleagris
           gallopavo]
          Length = 497

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 40/172 (23%), Gaps = 1/172 (0%)

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           +      +         + ++          + A+   L +             S     
Sbjct: 262 VMQDYIKYAVRYDNHYTNTKYCLCQMLREQLETAQGKKLHAAQSTQEICEAFEMSEFYEE 321

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
              V E+   +L      E          K       +      T               
Sbjct: 322 TTAVFEAKKTSLETKKQDEDDQMEDPDVIKMAVRFDKREYPPQITPKMYLLEWCRKEKHP 381

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225
             V        D  F  VV ++         D SK+ AEQ AA   L+  G+
Sbjct: 382 QPVYETVQRPLDKLFCSVVTVADQKYRSALWDKSKKLAEQAAAIVCLRTLGV 433


>gi|89114114|gb|ABD61648.1| R3D1 [Drosophila simulans]
          Length = 407

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223
           TP Y++    G  H+P F   V          A G   SK+ A+  AA  ++ + 
Sbjct: 117 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 171


>gi|89114100|gb|ABD61641.1| R3D1 [Drosophila simulans]
 gi|89114102|gb|ABD61642.1| R3D1 [Drosophila simulans]
 gi|89114104|gb|ABD61643.1| R3D1 [Drosophila simulans]
 gi|89114106|gb|ABD61644.1| R3D1 [Drosophila simulans]
 gi|89114108|gb|ABD61645.1| R3D1 [Drosophila simulans]
 gi|89114110|gb|ABD61646.1| R3D1 [Drosophila simulans]
 gi|89114112|gb|ABD61647.1| R3D1 [Drosophila simulans]
          Length = 407

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223
           TP Y++    G  H+P F   V          A G   SK+ A+  AA  ++ + 
Sbjct: 117 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 171


>gi|89114096|gb|ABD61639.1| R3D1 [Drosophila melanogaster]
          Length = 407

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223
           TP Y++    G  H+P F   V          A G   SK+ A+  AA  ++ + 
Sbjct: 117 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 171


>gi|89114084|gb|ABD61633.1| R3D1 [Drosophila melanogaster]
 gi|89114086|gb|ABD61634.1| R3D1 [Drosophila melanogaster]
 gi|89114088|gb|ABD61635.1| R3D1 [Drosophila melanogaster]
 gi|89114090|gb|ABD61636.1| R3D1 [Drosophila melanogaster]
 gi|89114092|gb|ABD61637.1| R3D1 [Drosophila melanogaster]
 gi|89114094|gb|ABD61638.1| R3D1 [Drosophila melanogaster]
 gi|89114098|gb|ABD61640.1| R3D1 [Drosophila melanogaster]
          Length = 407

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223
           TP Y++    G  H+P F   V          A G   SK+ A+  AA  ++ + 
Sbjct: 117 TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKL 171


>gi|2984731|gb|AAC08018.1| interferon resistance determinant protein [Orf virus]
 gi|74230732|gb|ABA00537.1| DsRNA-binding, interferon resistance [Orf virus]
          Length = 183

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH PRFT  + ISG   A     SK+ A   A +  L
Sbjct: 119 MMTHRPLEFCETRAGGEDHCPRFTCTITISGKVVAVADGASKKLARHTACSSAL 172


>gi|62637420|ref|YP_227418.1| DsRNA binding PKR inhibitor [Deerpox virus W-848-83]
 gi|115503280|gb|ABI99198.1| DsRNA binding PKR inhibitor [Deerpox virus W-848-83]
          Length = 199

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            +D         + ++     +     SGP H P FT  + ISG+     +  +K+ A+ 
Sbjct: 122 WKDKNPCSILNEYCQYTSRDWFIDIISSGPIHKPLFTATLCISGVKFRSAIGSTKKEAKT 181

Query: 214 VAAAEV 219
            A    
Sbjct: 182 NATKMA 187


>gi|198476324|ref|XP_001357331.2| GA19915 [Drosophila pseudoobscura pseudoobscura]
 gi|198137644|gb|EAL34400.2| GA19915 [Drosophila pseudoobscura pseudoobscura]
          Length = 477

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    +    P Y      G  H+  FT+   I       G   SK+ A++ A
Sbjct: 263 NPIGLLQELCMQRRWPPPTYATETEMGLPHERLFTIACTIL-QYREIGKGKSKKIAKRSA 321

Query: 216 AAEVLKRE 223
           A ++  R 
Sbjct: 322 AHKMWSRL 329



 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223
           TP Y++    G  H+P F   V          A G   SK+ A+  AA  ++ + 
Sbjct: 166 TPGYELVQIEGAIHEPTFRFRVSFKEKDTPFTAMGAGRSKKEAKHAAARALIDKL 220



 Score = 40.7 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 188 RFTVVVEISGLAPA--QGMDCSKRAAEQVAAAEVLKREGIWT 227
           +F  +V++S L      G   + R A++ AA   L+   I T
Sbjct: 434 QFQCLVQLSTLPVGVCHGTGPTAREAQRHAAQNALEYLKIMT 475


>gi|195156001|ref|XP_002018889.1| GL26052 [Drosophila persimilis]
 gi|194115042|gb|EDW37085.1| GL26052 [Drosophila persimilis]
          Length = 470

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    +    P Y      G  H+  FT+   I       G   SK+ A++ A
Sbjct: 256 NPIGLLQELCMQRRWPPPTYATETEMGLPHERLFTIACTIL-QYREIGKGKSKKIAKRSA 314

Query: 216 AAEVLKRE 223
           A ++  R 
Sbjct: 315 AHKMWSRL 322



 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVLKRE 223
           TP Y++    G  H+P F   V          A G   SK+ A+  AA  ++ + 
Sbjct: 159 TPGYELVQIEGAIHEPTFRFRVSFKEKDTPFTAMGAGRSKKEAKHAAARALIDKL 213



 Score = 40.7 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 188 RFTVVVEISGLAPA--QGMDCSKRAAEQVAAAEVLKREGIWT 227
           +F  +V++S L      G   + R A++ AA   L+   I T
Sbjct: 427 QFQCLVQLSTLPVGVCHGTGPTAREAQRHAAQNALEYLKIMT 468


>gi|255545990|ref|XP_002514055.1| conserved hypothetical protein [Ricinus communis]
 gi|223547141|gb|EEF48638.1| conserved hypothetical protein [Ricinus communis]
          Length = 361

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 24/81 (29%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
                    +        K  LQE+A       P Y       P     F   VEI G+ 
Sbjct: 86  CDEVNDSISQPVHETGLCKNLLQEYAQKMNYAIPLYLCQKNESPGRGTLFKCTVEIGGIH 145

Query: 200 PAQGMDCSKRAAEQVAAAEVL 220
                  +K+ AE  AA   L
Sbjct: 146 YIGASAKTKKEAEIKAARTAL 166



 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
                    S       K+ LQE+A  K   TP Y+     GP H+P F   V ++ +  
Sbjct: 1   MCTLPAMCSSVSNCYVFKSRLQEYAQKKGLPTPVYETIK-EGPSHEPSFRSTVIVNDIRY 59

Query: 201 AQGMDC-SKRAAEQVAAAEVLKRE 223
                  +++AAEQ AA   L   
Sbjct: 60  DSLPGFFNRKAAEQSAAEVALMEL 83


>gi|224055781|ref|XP_002298650.1| predicted protein [Populus trichocarpa]
 gi|222845908|gb|EEE83455.1| predicted protein [Populus trichocarpa]
          Length = 357

 Score = 52.2 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             T RSGP H P FT  VE++G+        +K+ AE+ AA        
Sbjct: 106 YTTVRSGPGHVPVFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220
                     R GPDH PRF   V  +G          + R AE  AA   L
Sbjct: 14  CFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVAL 65


>gi|290508248|ref|ZP_06547619.1| ribonuclease III [Klebsiella sp. 1_1_55]
 gi|289777642|gb|EFD85639.1| ribonuclease III [Klebsiella sp. 1_1_55]
          Length = 176

 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+     K       S
Sbjct: 1   MIANALYHRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRES 60

Query: 114 IQADVVESLIAALYLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
           I AD VE+LI  ++LD  I+     +      +   +  G  ++D KT LQE+   +   
Sbjct: 61  ILADTVEALIGGVFLDSDIQNVERLILSWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 120

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
            P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 LPSYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 160


>gi|307202941|gb|EFN82161.1| Protein DGCR8 [Harpegnathos saltator]
          Length = 659

 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 40/144 (27%), Gaps = 6/144 (4%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVV-----ESLIAALYLDGGIEVAGTFVD 140
              + + +  F   S+  +                    + +   +     +   G  V 
Sbjct: 301 FRFKAIKVMRFQSWSARRKFTKNKRHRKQLERPTLPDGTKLITFPVNSSCSVTGGGNAVG 360

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLA 199
               QR  K        K+ +            +         ++    ++ VV I+ + 
Sbjct: 361 DDNGQRPPKHWIMNPSGKSYVCILHEYVQHALKKQPTYKFKELENAATPYSAVVCINDME 420

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G   SK+ A+  AA + L+  
Sbjct: 421 YGSGFGSSKKQAKANAARKTLEIL 444


>gi|226481549|emb|CAX73672.1| Protein DGCR8 (DiGeorge syndrome critical region 8) [Schistosoma
           japonicum]
          Length = 369

 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 1/67 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K+ +         V         +  ++D   + + V I+G     G   SK+ A   AA
Sbjct: 78  KSYVCILHEYCQNVIRHPPTYQTTVLENDKNPYQMTVFINGTPYGTGTGQSKKCARLEAA 137

Query: 217 AEVLKRE 223
            + L+  
Sbjct: 138 RKALEVL 144


>gi|213512963|ref|NP_001133959.1| Spermatid perinuclear RNA-binding protein [Salmo salar]
 gi|209155962|gb|ACI34213.1| Spermatid perinuclear RNA-binding protein [Salmo salar]
          Length = 718

 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           +         +     +YK+  +SGP H P FT+ V++      +    SK+ A+   A 
Sbjct: 431 QPMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDSTVH-EASGSSKKTAKLHVAV 489

Query: 218 EVLKREGIWT 227
           +VL+  G  T
Sbjct: 490 KVLQAMGYPT 499


>gi|147856819|emb|CAN79168.1| hypothetical protein VITISV_028064 [Vitis vinifera]
          Length = 292

 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 25/100 (25%)

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
                       +F             K        L +    K G       T +SG  
Sbjct: 190 YAQKRNLPLPMYSFESIGPSHNCRFKSKDDYGVYKNLLQEMARKEGYQLPVYSTEKSGVS 249

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P F   VEI G         +K+ AE  AA        
Sbjct: 250 HMPTFLSTVEIEGETFVGQKAKTKKLAEMNAAKAAYTHLK 289



 Score = 44.9 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223
            P    T + GP H+P F   V + GL+ +      S + A+  AA   ++  
Sbjct: 25  NPPEYSTRKDGPPHNPTFXATVSVGGLSFSTDHPARSSKEAQSNAAGLAIQYL 77


>gi|308476926|ref|XP_003100678.1| CRE-ADR-1 protein [Caenorhabditis remanei]
 gi|308264696|gb|EFP08649.1| CRE-ADR-1 protein [Caenorhabditis remanei]
          Length = 1022

 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 40/179 (22%), Gaps = 10/179 (5%)

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
               + L  +         +    N  V+ E      R +       +       V    
Sbjct: 477 RHATNRLGSDMNILQCLYTICSVLNCTVTVECEPAEDRPIGDGRMYFM--GKCSIVDHSE 534

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
                      + +  L      +    + +             +A+             
Sbjct: 535 GGQTFQTKSDSVQSKPLAKEHAASEMLRNYFEIDPNTCCKSENVNAQGPCAVLHAMLNKQ 594

Query: 172 TPEYKVTFRSGPDHDPR--------FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           T +         ++ P+        F     I       G   SK+ A+  AA   LK+
Sbjct: 595 TKQRTKIAYEFKENVPQVAGSSAQDFYCDCVIDENDRYTGSGRSKKIAKNAAAMMALKK 653


>gi|46121645|ref|XP_385377.1| hypothetical protein FG05201.1 [Gibberella zeae PH-1]
          Length = 331

 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 76/262 (29%), Gaps = 58/262 (22%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           N  L  +   H         ++E+LE+ GD  L ++ +  +F  F     G  S     L
Sbjct: 48  NPDLEAQVFRHP---GLGGPNWEKLEWYGDATLEMISTEFIFETFPHLPSGRCSQIREQL 104

Query: 79  VSAETCSQVARELDLASFIRVSSD--------LRKDVCSFMTSIQADVVESLIAALYLDG 130
           V   T +   RE  +    ++  D          +     +  +Q DV E+ + A+    
Sbjct: 105 VRNVTLAGYYREYGMEHKTQLPIDVGKMTVLLQTQKNNKDVIKLQGDVFEAYVGAVVKSH 164

Query: 131 GIEVAGTFVD-KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD----- 184
               A      K    R +K    + ++  E+   A               + P+     
Sbjct: 165 PQGNANAVAWLKMLWGRTIKGQIQQAESYREIIAQAQPIITQQSPTMQEQSTQPEAKAVE 224

Query: 185 ------------------------------------HDPRFTVVVEISG-----LAPAQG 203
                                                 P F + V + G        A G
Sbjct: 225 PLTEQNAKARLSTAIAVPGVKLRYEDMPCKRKDRDTGLPLFAIGVYLDGWGETNKQLAFG 284

Query: 204 MDCSKRAAEQVAAAEVLKREGI 225
           +   K  A   AA +VLK E +
Sbjct: 285 VAKRKAEAGGKAALQVLKNEKV 306


>gi|168043507|ref|XP_001774226.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
 gi|162674494|gb|EDQ61002.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
          Length = 683

 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L +    + GV+     T RSGP H P FT  VE++ ++ +     +K+ AE+ AA 
Sbjct: 152 CKNLLQETAQRAGVSLPVYATTRSGPGHLPVFTCTVEVANMSFSGEAAKTKKQAEKNAAM 211

Query: 218 E---VLKRE 223
                +++ 
Sbjct: 212 AAWSAIQQL 220



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
                     R GPDH PRF   V  +G          + R AE  AA   L   
Sbjct: 78  CFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHAAAEVALNTL 132


>gi|82582931|gb|ABB84391.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 51.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH PRFT  + ISG   +     SK+ A   A A  L
Sbjct: 102 MMTRRPLEFCETRSGGEDHCPRFTCTITISGKVVSVADGASKKLARHAACASAL 155


>gi|330928085|ref|XP_003302123.1| hypothetical protein PTT_13822 [Pyrenophora teres f. teres 0-1]
 gi|311322704|gb|EFQ89784.1| hypothetical protein PTT_13822 [Pyrenophora teres f. teres 0-1]
          Length = 441

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 71/210 (33%), Gaps = 25/210 (11%)

Query: 23  LEKA-LTHSSI-----------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           L +A  TH S                   YERLE LGD  + L+ S  L+N F      E
Sbjct: 134 LHEAVFTHRSAIFDPSIPGSTLGQDLSLDYERLELLGDAYIELIASRALYNRFPHVDVPE 193

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL-- 128
           L +    LV   T  + +        ++  +   K        + AD+VE+ +AA+ L  
Sbjct: 194 LCMWRERLVENSTLGRFSHAYGFPDRLKHRAMWDKTS-KQYQKVVADIVEAYVAAIVLSD 252

Query: 129 -DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD- 186
            D G E A  ++ + W  + L   +   +      E      G   +          +D 
Sbjct: 253 PDNGFEAAEAWLTELWAPQLLGFREKIIENPQARNELNRLVLGKDVKLITKEEKPMSYDE 312

Query: 187 ---PRFTVVVEI-----SGLAPAQGMDCSK 208
                + + + +     +      G   +K
Sbjct: 313 NSIQCYHIGIYLTGWGYNDEWLGSGHGQNK 342


>gi|313225131|emb|CBY20924.1| unnamed protein product [Oikopleura dioica]
          Length = 2665

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 4/128 (3%)

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158
                     + +   +   +   +  L L          +  +     +        A+
Sbjct: 14  YDFCKNDSHSTRLDKPEKTALAEFLRFLGLKKVFSNHHYLLKYWQHSLFILEVLSDALAR 73

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAP-AQGMDCSKRAAEQVA 215
                +    F      K   ++GP H P FT    V++ G    A+G   SK+ A+  A
Sbjct: 74  LGPNHYHSHNFISKKIEKKKKKNGPPHKPTFTFECSVKVKGSWYAAKGKSNSKQNAKHEA 133

Query: 216 AAEVLKRE 223
           A   L++ 
Sbjct: 134 AK-ALRKI 140


>gi|224125924|ref|XP_002319709.1| predicted protein [Populus trichocarpa]
 gi|222858085|gb|EEE95632.1| predicted protein [Populus trichocarpa]
          Length = 240

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLKREG 224
             T +SG  H P F   VEI G     G    +K+ AE  AA        
Sbjct: 190 YSTNKSGEAHVPTFISTVEIEGE-IFTGQGAKTKKQAEMSAAKTAYTALK 238



 Score = 38.4 bits (87), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAP--AQGMDCSKRAAEQVAAAEVLK 221
             + R G  H+PRF   V ++ ++       + SK+ A+  AA    +
Sbjct: 20  YESSRQGQAHNPRFLATVTVNNISFHSPSPSNTSKK-AQNDAAKLAYE 66


>gi|241723276|ref|XP_002413706.1| secreted protein, putative [Ixodes scapularis]
 gi|215507522|gb|EEC17014.1| secreted protein, putative [Ixodes scapularis]
          Length = 211

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 9/107 (8%)

Query: 14  GYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           GY F N ++L KAL H S          +++E L+++G  +L  ++       +      
Sbjct: 42  GYTFKNPNILLKALLHPSYKARDRKGAADNFEPLDYVGGFVLDYVVGRTRVRRYILMNSP 101

Query: 70  ELSVRFNSLV-----SAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
             +    S         ++ +  A + +   ++ +   + K      
Sbjct: 102 NKTQHAMSHAKVAVLRQDSLAYFAVKNNFHKYVFLDRPIEKSSLRDF 148


>gi|328778714|ref|XP_397444.4| PREDICTED: microprocessor complex subunit DGCR8-like [Apis
           mellifera]
          Length = 638

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 1/81 (1%)

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            +            +   +                         P ++ VV I+ +    
Sbjct: 344 QRPPKHWIMNPSGKSYVCILHEYVQHALKKQPTYKFKELENAATP-YSAVVCINDMEYGS 402

Query: 203 GMDCSKRAAEQVAAAEVLKRE 223
           G   SK+ A+  AA + L+  
Sbjct: 403 GFGSSKKQAKANAARKTLEIL 423


>gi|87117418|gb|ABD19995.1| Rnc [Shigella flexneri]
 gi|87117421|gb|ABD19997.1| Rnc [Shigella flexneri]
 gi|87117427|gb|ABD20001.1| Rnc [Shigella flexneri]
 gi|87117430|gb|ABD20003.1| Rnc [Shigella dysenteriae]
 gi|87117433|gb|ABD20005.1| Rnc [Shigella flexneri]
 gi|87117436|gb|ABD20007.1| Rnc [Shigella flexneri]
 gi|87117439|gb|ABD20009.1| Rnc [Shigella flexneri]
 gi|87117442|gb|ABD20011.1| Rnc [Shigella boydii]
 gi|87117445|gb|ABD20013.1| Rnc [Shigella dysenteriae]
 gi|87117448|gb|ABD20015.1| Rnc [Shigella dysenteriae]
 gi|87117451|gb|ABD20017.1| Rnc [Shigella boydii]
 gi|87117454|gb|ABD20019.1| Rnc [Shigella boydii]
 gi|87117457|gb|ABD20021.1| Rnc [Shigella dysenteriae]
 gi|87117460|gb|ABD20023.1| Rnc [Shigella dysenteriae]
 gi|87117466|gb|ABD20027.1| Rnc [Shigella dysenteriae]
 gi|87117469|gb|ABD20029.1| Rnc [Shigella boydii]
 gi|87117472|gb|ABD20031.1| Rnc [Shigella boydii]
 gi|87117475|gb|ABD20033.1| Rnc [Shigella boydii]
 gi|87117478|gb|ABD20035.1| Rnc [Shigella dysenteriae]
 gi|87117481|gb|ABD20037.1| Rnc [Shigella flexneri]
 gi|87117484|gb|ABD20039.1| Rnc [Shigella dysenteriae]
 gi|87117487|gb|ABD20041.1| Rnc [Shigella boydii]
 gi|87117490|gb|ABD20043.1| Rnc [Shigella boydii]
 gi|87117493|gb|ABD20045.1| Rnc [Shigella boydii]
 gi|87117499|gb|ABD20049.1| Rnc [Shigella dysenteriae]
 gi|87117502|gb|ABD20051.1| Rnc [Shigella boydii]
 gi|87117505|gb|ABD20053.1| Rnc [Shigella dysenteriae]
 gi|87117508|gb|ABD20055.1| Rnc [Shigella boydii]
 gi|87117511|gb|ABD20057.1| Rnc [Shigella boydii]
 gi|87117517|gb|ABD20061.1| Rnc [Shigella boydii]
 gi|87117523|gb|ABD20065.1| Rnc [Shigella boydii]
 gi|87117526|gb|ABD20067.1| Rnc [Shigella flexneri]
 gi|87117529|gb|ABD20069.1| Rnc [Shigella flexneri]
 gi|87117532|gb|ABD20071.1| Rnc [Shigella boydii]
 gi|87117535|gb|ABD20073.1| Rnc [Escherichia coli]
 gi|87117538|gb|ABD20075.1| Rnc [Escherichia coli]
 gi|87117541|gb|ABD20077.1| Rnc [Escherichia coli]
          Length = 178

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 3/162 (1%)

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
             +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+     K      
Sbjct: 1   SYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60

Query: 112 TSIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
            SI AD VE+LI  ++LD  I+            +   +  G  ++D KT LQE+   + 
Sbjct: 61  ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162


>gi|242069683|ref|XP_002450118.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
 gi|241935961|gb|EES09106.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
          Length = 118

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220
           T     T + GP H+P F   V ++           S++AAEQ AA   L
Sbjct: 47  TTLEYHTLKEGPSHEPVFKSTVVVNNTRYESLPGFFSRKAAEQSAAEVAL 96


>gi|45383189|ref|NP_989818.1| interferon-induced, double-stranded RNA-activated protein kinase
           [Gallus gallus]
 gi|38194196|dbj|BAD01484.1| double-stranded RNA-activated protein kinase [Gallus gallus]
          Length = 550

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 23/66 (34%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L      K     +Y    R+G  H P ++    ISG     G   S   A+Q AA 
Sbjct: 100 YISLLNKYSQKTLQLVDYNNINRTGDPHAPMYSCSCVISGHVYGNGKGNSLAVAKQAAAK 159

Query: 218 EVLKRE 223
           E  +  
Sbjct: 160 EAYEVL 165



 Score = 43.0 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
           Y      GP HDP F VVV+I+G+    G+ 
Sbjct: 22  YVDVDMRGPSHDPEFEVVVKINGVKYGTGVG 52


>gi|321457593|gb|EFX68676.1| hypothetical protein DAPPUDRAFT_329837 [Daphnia pulex]
          Length = 120

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAK 67
            E+ + Y F ++ +L +ALT     +S +  +Y+RLE +GD  L  L +   F       
Sbjct: 55  FEEVLSYTFNDKEVLLEALT---YGNSIRSLNYQRLEVIGDAALEFLAALQFFKQSSLYH 111

Query: 68  E 68
            
Sbjct: 112 S 112


>gi|242025570|ref|XP_002433197.1| staufen, putative [Pediculus humanus corporis]
 gi|212518738|gb|EEB20459.1| staufen, putative [Pediculus humanus corporis]
          Length = 767

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         +T +Y++T   GP H   FTV + +           S + A+  AAA
Sbjct: 116 PMCLVNELARFNKITHQYRLTNEHGPAHKKSFTVTLTLGTEEY-TADAPSIKKAQHSAAA 174

Query: 218 EVLKR 222
           E L +
Sbjct: 175 EALAK 179


>gi|307178016|gb|EFN66877.1| Protein DGCR8 [Camponotus floridanus]
          Length = 643

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 38/143 (26%), Gaps = 5/143 (3%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVV----ESLIAALYLDGGIEVAGTFVDK 141
              + + +  F   S+  +                     LI            G+    
Sbjct: 286 FRFKSIKVMRFQSWSARRKFTKNKKHRKQLERPTLPDGTKLITFPVNSSSTAGNGSTAGD 345

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAP 200
              QR  K        K+ +            +         ++    ++ VV I+ +  
Sbjct: 346 DNGQRPAKHWIMNPSGKSYVCILHEYVQHALKKQPTYKFKELENAATPYSAVVCINDMEY 405

Query: 201 AQGMDCSKRAAEQVAAAEVLKRE 223
             G   SK+ A+  AA + L+  
Sbjct: 406 GSGFGSSKKQAKANAARKTLEIL 428


>gi|87117424|gb|ABD19999.1| Rnc [Shigella flexneri]
          Length = 178

 Score = 51.9 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
             +I+  L++ F  A EG++S    +LV   T +++ARE +L   +R+     K      
Sbjct: 1   SYVIANALYHRFPRADEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60

Query: 112 TSIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
            SI AD VE+LI  ++LD  I+            +   +  G  ++D KT LQE+   + 
Sbjct: 61  ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162


>gi|291618446|ref|YP_003521188.1| Rnc [Pantoea ananatis LMG 20103]
 gi|291153476|gb|ADD78060.1| Rnc [Pantoea ananatis LMG 20103]
          Length = 176

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           +I+  L++ F    EG++S    +LV   T +++ARE DL   +R+     K       S
Sbjct: 1   MIANALYHRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRES 60

Query: 114 IQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
           I AD VE+LI  ++LD  I+            +   +  G  ++D KT LQE+   +   
Sbjct: 61  ILADTVEALIGGVFLDSDIQTVEKLILDWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 120

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
            P Y V    G  HD  FT+  ++SG+  P  G+  S+R 
Sbjct: 121 LPSYLVVQVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 160


>gi|211956314|ref|YP_002302383.1| DsRNA binding PKR inhibitor [Deerpox virus W-1170-84]
 gi|115503109|gb|ABI99027.1| DsRNA binding PKR inhibitor [Deerpox virus W-1170-84]
          Length = 199

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 25/66 (37%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            +D         + ++     Y     SGP H P FT  + ISG+     +  +K+ A+ 
Sbjct: 122 WKDKNPCSVLNEYCQYTSRDWYIDIISSGPIHKPLFTATLCISGVKFRSAIGSTKKEAKT 181

Query: 214 VAAAEV 219
            A    
Sbjct: 182 NATRMA 187


>gi|168043471|ref|XP_001774208.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
 gi|162674476|gb|EDQ60984.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
          Length = 577

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 29/67 (43%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L +    + GV+     T RSGP H P FT  VE++ +  +     +K+ AE+ AA 
Sbjct: 106 CKNLLQETAQRAGVSLPVYSTTRSGPGHLPVFTCTVELAKMTFSGEAAKTKKQAEKNAAM 165

Query: 218 EVLKREG 224
                  
Sbjct: 166 AAWSALK 172



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
            +        R GPDH PRF   V  +G          + R AE  AA   L   
Sbjct: 32  CINLPAYACIREGPDHAPRFKATVSFNGEIFESPNYCNTLRQAEHAAAEVALNTL 86


>gi|87117520|gb|ABD20063.1| Rnc [Shigella boydii]
          Length = 178

 Score = 51.9 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
             +I+ +L++ F    EG++S    +LV   T +++ARE +L   +R+     K      
Sbjct: 1   SYVIANVLYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60

Query: 112 TSIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
            SI AD VE+LI  ++LD  I+            +   +  G  ++D KT LQE+   + 
Sbjct: 61  ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162


>gi|312067398|ref|XP_003136724.1| double-stranded RNA binding domain-containing protein family
           protein [Loa loa]
 gi|307768110|gb|EFO27344.1| double-stranded RNA binding domain-containing protein family
           protein [Loa loa]
          Length = 445

 Score = 51.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
                  GP +   F    ++ G     G   +K+ A+ +AA ++  +   W
Sbjct: 211 NYEIDEEGPPNHRIFIATCKM-GKVHVVGHGKTKKIAKTLAAQKMYAQLENW 261



 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F +  E+ G+    G   +K+ A+Q+AA  +LK+ 
Sbjct: 118 FAIRCELYGIH-TIGHGRTKKIAKQMAAKNMLKKM 151


>gi|126177989|ref|YP_001045954.1| ribonuclease III [Methanoculleus marisnigri JR1]
 gi|125860783|gb|ABN55972.1| RNAse III [Methanoculleus marisnigri JR1]
          Length = 156

 Score = 51.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 5/129 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFD 64
           +E+RIGY F +R+LLE+ALT  + +       +   + L  LGD +   +          
Sbjct: 14  IEERIGYTFKDRALLERALTRLAYTLEAGIPPETHMDALATLGDAV-INVAVVEAVVAGG 72

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  +G +S R  +LV+      +A +LDLA ++R               + A+ +E+L+ 
Sbjct: 73  AHDKGAISNRKMNLVNMTRLRGLAEDLDLADYVRWGKGEAAQRVWTSGRVLAECLEALVG 132

Query: 125 ALYLDGGIE 133
           A+YLDGG++
Sbjct: 133 AVYLDGGMD 141


>gi|298204936|emb|CBI34243.3| unnamed protein product [Vitis vinifera]
          Length = 551

 Score = 51.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223
             T RSGP H P F+  VEI+G++       +K+ A++ AA      L++ 
Sbjct: 106 YTTIRSGPGHVPVFSCTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSALRKL 156



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
                     R GPDH PRF   V  +G          + R AE  AA   L   
Sbjct: 14  CFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAAAEVALNTL 68


>gi|225451189|ref|XP_002271134.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 543

 Score = 51.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223
             T RSGP H P F+  VEI+G++       +K+ A++ AA      L++ 
Sbjct: 106 YTTIRSGPGHVPVFSCTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSALRKL 156



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
                     R GPDH PRF   V  +G          + R AE  AA   L   
Sbjct: 14  CFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAAAEVALNTL 68


>gi|328854071|gb|EGG03206.1| hypothetical protein MELLADRAFT_109487 [Melampsora larici-populina
           98AG31]
          Length = 534

 Score = 51.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 7/132 (5%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             LE ++ Y F + +LL  AL     S        RL++LG+ IL    +  L +    +
Sbjct: 379 KELEAKLKYKFNDINLLRNAL-----SRKNLRENRRLKWLGEAILDDWTTYALKDVLVKS 433

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV--CSFMTSIQADVVESLIA 124
                      +    T S  AR         V S + +       +T  QAD+V  LIA
Sbjct: 434 PRRRPLHALAYMHWNATLSTWARRWLQPIKGLVESKIFEVNKDGRALTKTQADLVLVLIA 493

Query: 125 ALYLDGGIEVAG 136
            + +D   +   
Sbjct: 494 VMCIDCKGDFYP 505


>gi|195036498|ref|XP_001989707.1| GH18644 [Drosophila grimshawi]
 gi|193893903|gb|EDV92769.1| GH18644 [Drosophila grimshawi]
          Length = 654

 Score = 51.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 33/138 (23%), Gaps = 1/138 (0%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
              + + +  F   ++  +                     L     +   G       + 
Sbjct: 310 FKFKTIRVLRFRSWNARRKFTKNRKNIKNIQRPTLPDGTKLIKFPILAAGGADGSSNPRG 369

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
           R          +   +          T              P ++  V ++ L    G  
Sbjct: 370 RREWIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVNNLKYGTGYG 428

Query: 206 CSKRAAEQVAAAEVLKRE 223
            SK+ A+  AA E L+  
Sbjct: 429 TSKKQAKSEAARETLEIL 446


>gi|242084480|ref|XP_002442665.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
 gi|241943358|gb|EES16503.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
          Length = 394

 Score = 51.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220
                 T + GP H+P F   V ++           S++AAEQ AA   L
Sbjct: 52  PTPEYHTLKEGPSHEPVFKSTVLVNNTTYESLPGFFSRKAAEQSAAEVAL 101



 Score = 47.2 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F   VEI G+        +K+ AE  AA   L
Sbjct: 155 FICTVEIGGIQYIGAAARTKKEAEIKAARTAL 186


>gi|195641916|gb|ACG40426.1| double-stranded RNA binding motif family protein [Zea mays]
 gi|195644492|gb|ACG41714.1| double-stranded RNA binding motif family protein [Zea mays]
          Length = 352

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
             T RSGP H P F+  VE++GL+ A     +K+ AE+ AA      LK+ 
Sbjct: 106 YTTVRSGPGHSPVFSSTVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQM 156



 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAEQVAAAEVLKRE 223
             +    V  R GPDH PRF   V  +G         S     R AE  AA   L R 
Sbjct: 14  CFSLPSYVCTREGPDHAPRFRAAVTFNGETF---EGPSGCTTLRQAEHAAAEVALARL 68


>gi|332027530|gb|EGI67607.1| RISC-loading complex subunit tarbp2 [Acromyrmex echinatior]
          Length = 343

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE         PEY +    GP H   FT+  ++S      G+  +K+ A+  AA  ++
Sbjct: 114 LQELCAENNLHEPEYFLIQDVGPPHAKIFTIRCKVSNFEE-DGIATTKKQAKHDAAKRMV 172

Query: 221 KREG 224
            +  
Sbjct: 173 DKIK 176



 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
                  + +   AK G+TP+YK+    G  H   FT  V       A G    K+ A+ 
Sbjct: 1   MSKTPVSILQEMMAKQGMTPDYKLIHDGGGRHVNTFTYRVTCD-SLSATGTGRCKKDAKH 59

Query: 214 VAAAEVL 220
            AA  +L
Sbjct: 60  EAAKAML 66


>gi|297821192|ref|XP_002878479.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
           [Arabidopsis lyrata subsp. lyrata]
 gi|297324317|gb|EFH54738.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
           [Arabidopsis lyrata subsp. lyrata]
          Length = 343

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 18/44 (40%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             T  SGP H P F   VE +G         +K+ AE  AA   
Sbjct: 91  YATATSGPSHSPTFISTVEFAGKVFTGDEAKTKKLAEMSAAKIA 134



 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
            R GP H PRF   V   G    +     + ++AE  AA   L   
Sbjct: 26  EREGPPHAPRFRCKVTFCGQTFQSLEFFPTLKSAEHAAAKIALASL 71


>gi|256080367|ref|XP_002576453.1| hypothetical protein [Schistosoma mansoni]
 gi|238661721|emb|CAZ32690.1| expressed protein [Schistosoma mansoni]
          Length = 764

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 176 KVTFRSGPDHDPRFTVVVEIS-----GLAPAQGMDCSKRAAEQVAAAEVLK 221
                SGP H+  F V V I+           G+  S + A ++AA   L+
Sbjct: 30  WTCEESGPFHNKVFRVSVIINHHSLKSSEIYYGVGSSVKEARRMAAESALQ 80



 Score = 42.6 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/188 (10%), Positives = 49/188 (26%), Gaps = 4/188 (2%)

Query: 42  RLEFL-GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           RL  L G   +          + +  K   + +      +        +  + A+   ++
Sbjct: 228 RLRILAGLHFIQPFFKIQKLTNCEPNKFTCICLLDGWKYTENRSISAKKAQNAAAQSMLN 287

Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
           +  + +             +     +Y                +          R     
Sbjct: 288 NMNKIENKCSTVPFYDKQYDVTSKGVYKQNHKPCKIKLQLIQHRAFDESVHPVCRLEYFR 347

Query: 161 LQEWAHAKFGVTPEYKVTFRSGP---DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           +              ++            P F   +E S +     +  +KR A+++AA 
Sbjct: 348 IVNNLDKVKYTLLNDQLPSGEHKSLAPGRPPFIYQLEFSNMCIQGPVANNKRLAKRLAAE 407

Query: 218 EVLKREGI 225
            +L + G+
Sbjct: 408 LLLTKLGL 415


>gi|157130321|ref|XP_001655660.1| hypothetical protein AaeL_AAEL011753 [Aedes aegypti]
 gi|108871912|gb|EAT36137.1| conserved hypothetical protein [Aedes aegypti]
          Length = 318

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +++    +    PE+     SGP H P F     I G    +G+  +K+ A+Q A  E++
Sbjct: 108 VRDICVQRNFEMPEFNCVRSSGPSHAPEFEYECRI-GAIVRRGIHKTKKGAKQAACNEMI 166

Query: 221 KRE 223
           K  
Sbjct: 167 KTL 169



 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G  +   FT  V   G   + G+  SK+ ++  AA ++LK  
Sbjct: 40  GNPNSKVFTTSVLALGFT-SSGIGRSKKDSKHDAAYKLLKLL 80


>gi|321468042|gb|EFX79029.1| hypothetical protein DAPPUDRAFT_319983 [Daphnia pulex]
          Length = 130

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY-ERLEFLGDRILGL-LISTLLFNHFDSA 66
            E+ + Y F ++ +L +ALT     +S +    +RLE +GD  L                
Sbjct: 55  FEEVLSYTFNDKEVLLEALT---YGNSIRSLNDQRLEVIGDAALEFLAALQFFKQSSLYH 111

Query: 67  KEGELSVRFNSLVSAETC 84
             G++S   ++ V  +  
Sbjct: 112 SAGDISQLRSACVCDDIF 129


>gi|321457595|gb|EFX68678.1| hypothetical protein DAPPUDRAFT_329840 [Daphnia pulex]
          Length = 154

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAK 67
            E+ + Y F ++ +L +ALT     +S +  +Y+RLE +GD  L  L +   F       
Sbjct: 89  FEEVLSYTFNDKEVLLEALT---YGNSIRSLNYQRLEVIGDAALEFLAALQFFKQSSLYH 145

Query: 68  E 68
            
Sbjct: 146 S 146


>gi|302306614|ref|NP_983011.2| ABR065Wp [Ashbya gossypii ATCC 10895]
 gi|299788601|gb|AAS50835.2| ABR065Wp [Ashbya gossypii ATCC 10895]
          Length = 344

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 51/179 (28%), Gaps = 2/179 (1%)

Query: 45  FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
           ++G  +L  +                   +  S ++          L     IR+ S   
Sbjct: 146 YIGLPVLAQIGRGWGIESERETVMERFLRQEPSHMTLGRLRFFNNTLKEIDGIRILSSSN 205

Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW 164
               + M      +V +L A+      +E          ++  +           EL   
Sbjct: 206 MSESASMAMAVRSIVGALWASTQDLQLVERFLDA-HVMSRKLPITQLFMFEQPTRELARL 264

Query: 165 AHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              +    P  K+   +G     P F V V        +G   S + A+  AA + L +
Sbjct: 265 CSREGLERPVSKLIAETGRLSKAPVFVVGVFSGEEKLGEGFGSSLKEAKARAATDALMK 323


>gi|158285608|ref|XP_308394.4| AGAP007478-PA [Anopheles gambiae str. PEST]
 gi|157020074|gb|EAA04622.5| AGAP007478-PA [Anopheles gambiae str. PEST]
          Length = 1149

 Score = 51.5 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         +  +Y++T  SGP H   FTV++++           S + A+  AA 
Sbjct: 424 TMCLVNELARYNKIQHQYRLTGESGPAHKKHFTVMLKLGDEEY-TAEGASIKKAQHKAAG 482

Query: 218 EVL 220
           + +
Sbjct: 483 DAI 485



 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP H   F    ++ G    +G    K+ +++ AA ++L+  
Sbjct: 768 ISEKGPPHMTVFVTQCKV-GTIVTEGEGTGKKLSKKRAAEKMLEEL 812



 Score = 43.8 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            +  + L +   A+    P Y +     P      +FT+ V   G   A G+  +K+AA+
Sbjct: 877 ENPISRLMQIQQARKEKQPVYTLQENDRPAVGRRRQFTIEVSAGGRQ-ATGVGMTKKAAK 935

Query: 213 QVAAAEVLKREG 224
             AA  +L   G
Sbjct: 936 WNAAEALLIELG 947


>gi|315049207|ref|XP_003173978.1| double-strand-specific pac1 ribonuclease [Arthroderma gypseum CBS
           118893]
 gi|311341945|gb|EFR01148.1| double-strand-specific pac1 ribonuclease [Arthroderma gypseum CBS
           118893]
          Length = 397

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 29/225 (12%)

Query: 23  LEKA-LTH-------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           L+ A  TH          + + +++Y+RLE LGD  + L+ + L++ +F +   G+++  
Sbjct: 138 LKTAVFTHTGIMERGPISTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKIAQA 197

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             ++V  ET ++ A        ++ SSD+R  V    T +  DV E+ +AA  +      
Sbjct: 198 RETMVKNETLAEYAIAYGFDQRLKTSSDIR-SVPKRWTKVMGDVFEAYVAAAIIADPKGG 256

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-----DHDPR- 188
                    +    K  + +    +                      G      D  PR 
Sbjct: 257 LQAVESWLTQLWLPKLAEVKVPLASVALAQGSKASLKDKLAATVMSRGIKLQYLDEKPRQ 316

Query: 189 --------FTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220
                   F + V ++G          G   SK  A   AA   L
Sbjct: 317 REGGLVTSF-IGVYLTGWGYEKKLLGSGSGLSKSEAGNEAALNAL 360


>gi|21357163|ref|NP_651879.1| partner of drosha [Drosophila melanogaster]
 gi|7302074|gb|AAF57175.1| partner of drosha [Drosophila melanogaster]
 gi|16197965|gb|AAL13753.1| LD23072p [Drosophila melanogaster]
 gi|220945782|gb|ACL85434.1| pasha-PA [synthetic construct]
 gi|220955486|gb|ACL90286.1| pasha-PA [synthetic construct]
          Length = 642

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 32/138 (23%), Gaps = 2/138 (1%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
              + + +  F   ++  +                       +   I           + 
Sbjct: 299 FKFKVIRVLRFRSWNARRKFTKNRKHIKNIQRPTLPD-GTKLIKFPILANAGEGSTNPRG 357

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
           R          +   +          T              P ++  V ++ L    G  
Sbjct: 358 RKEWIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVNNLKYGTGYG 416

Query: 206 CSKRAAEQVAAAEVLKRE 223
            SK+ A+  AA E L+  
Sbjct: 417 TSKKQAKSEAARETLEIL 434


>gi|195575342|ref|XP_002105638.1| GD21592 [Drosophila simulans]
 gi|194201565|gb|EDX15141.1| GD21592 [Drosophila simulans]
          Length = 642

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 1/75 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                   +   +          T              P ++  V ++ L    G   SK
Sbjct: 361 WIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVNNLKYGTGYGTSK 419

Query: 209 RAAEQVAAAEVLKRE 223
           + A+  AA E L+  
Sbjct: 420 KQAKSEAARETLEIL 434


>gi|195505492|ref|XP_002099528.1| GE10954 [Drosophila yakuba]
 gi|194185629|gb|EDW99240.1| GE10954 [Drosophila yakuba]
          Length = 643

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 1/75 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                   +   +          T              P ++  V ++ L    G   SK
Sbjct: 362 WIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVNNLKYGTGYGTSK 420

Query: 209 RAAEQVAAAEVLKRE 223
           + A+  AA E L+  
Sbjct: 421 KQAKSEAARETLEIL 435


>gi|195354476|ref|XP_002043723.1| GM16438 [Drosophila sechellia]
 gi|194128923|gb|EDW50966.1| GM16438 [Drosophila sechellia]
          Length = 642

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 1/75 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                   +   +          T              P ++  V ++ L    G   SK
Sbjct: 361 WIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVNNLKYGTGYGTSK 419

Query: 209 RAAEQVAAAEVLKRE 223
           + A+  AA E L+  
Sbjct: 420 KQAKSEAARETLEIL 434


>gi|194904820|ref|XP_001981066.1| GG11821 [Drosophila erecta]
 gi|190655704|gb|EDV52936.1| GG11821 [Drosophila erecta]
          Length = 642

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 1/75 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                   +   +          T              P ++  V ++ L    G   SK
Sbjct: 361 WIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVNNLKYGTGYGTSK 419

Query: 209 RAAEQVAAAEVLKRE 223
           + A+  AA E L+  
Sbjct: 420 KQAKSEAARETLEIL 434


>gi|102139807|gb|ABF69992.1| double-stranded RNA-binding (DsRBD) domain-containing protein [Musa
           acuminata]
          Length = 610

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             T RSGP H P FT  VE++G++       +K+ A++ AA        
Sbjct: 106 YTTVRSGPGHTPIFTCTVELAGMSFTGDPAKTKKQAQKNAAMAAWSALK 154



 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223
            GPDH PRF   V  +G A        + R AE  AA   L   
Sbjct: 25  EGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHSAAEVALNTL 68


>gi|87117514|gb|ABD20059.1| Rnc [Shigella boydii]
          Length = 178

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 3/162 (1%)

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
             +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+     K      
Sbjct: 1   SYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60

Query: 112 TSIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
            SI AD VE+LI  ++LD  I             +   +  G  ++D KT LQE+   + 
Sbjct: 61  ESILADTVEALIGGVFLDSDIRTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162


>gi|18656508|gb|AAL77809.1|AF389451_16 ribonuclease-like protein [Tiger frog virus]
          Length = 371

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 72/217 (33%), Gaps = 17/217 (7%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVRF 75
           R L  K  T  S++    ++YE LE +GD +      +     F      +    ++   
Sbjct: 25  RDLWNKVFTPKSVN--PDDNYEALEIVGDGVASYFFPSYFLKRFPQLNSPKGVKTVARLK 82

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
               S ++ S +A  L    FIR  S       S   S+  D  E+ + A+ +    E +
Sbjct: 83  IYYGSKKSFSSIADSLGFWKFIR--SGPMPVNPSTRESLLEDTFEAFLGAVCMAVDDEYS 140

Query: 136 GT-FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD----HDPRFT 190
                     +           +      +                 G D    H    T
Sbjct: 141 IDGLGAVVAYKIMADIFDDMDISLEYTALFDTVTRLKELMDVKKDVLGGDAVYNHMGDTT 200

Query: 191 VVVEISGLAPAQGMDCSKRA-AEQVA--AAEVLKREG 224
           V + ++G    +     KR  A++ A  A ++L+REG
Sbjct: 201 V-ITLNGRVIGKATGAIKRDRAKEAAGQALDLLRREG 236


>gi|302793885|ref|XP_002978707.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
 gi|300153516|gb|EFJ20154.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
          Length = 675

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L +    + GV      T RSGP H P FT  V + G+        +K+ AE+ AA 
Sbjct: 91  YKNLLQETAQRAGVPLPIYTTVRSGPGHLPVFTCTVGVGGMIFTGEAAKTKKQAEKNAAM 150

Query: 218 EVLKREG 224
                  
Sbjct: 151 TAWSSLK 157


>gi|302805769|ref|XP_002984635.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
 gi|300147617|gb|EFJ14280.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
          Length = 190

 Score = 51.5 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L +    + GV      T RSGP H P FT  V + G+        +K+ AE+ AA 
Sbjct: 88  YKNLLQETAQRAGVPLPIYTTVRSGPGHLPVFTCTVGVGGMIFTGEAAKTKKQAEKNAAM 147

Query: 218 EVLKREG 224
                  
Sbjct: 148 TAWSSLK 154


>gi|225438954|ref|XP_002284222.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 542

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 51/185 (27%), Gaps = 12/185 (6%)

Query: 21  SLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +LL  A  H S   +        + RL FLG  +L L  +      +       +  R  
Sbjct: 171 ALLYLAFQHPSCDRANARHVRSGHSRLWFLGQYVLELAFAEYFLQRYPRESPAPMRERVF 230

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            L+      Q  +   L + +    D+ + +          V  +L  A+YL  G+    
Sbjct: 231 ELIGKRNLPQWIKAASLQNLVFPFDDMDRLIRKEREPPVKSVFWALFGAIYLCYGMPEVY 290

Query: 137 T--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDPR 188
              F                R    ++   +         ++      P       H   
Sbjct: 291 RVLFEVFGMDPEHEDCQPKLRRQLEDVDYVSVEFENNKLSWQDVAAYKPPEDALFAHPRL 350

Query: 189 FTVVV 193
           F   V
Sbjct: 351 FRACV 355



 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 18  ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S       +  YERLE++G +I  ++++  L      A    L 
Sbjct: 396 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQ 455

Query: 73  VRFNSLVSAETCSQVARELDLASFIRV 99
            +   L+  + C +  R+  L  FI  
Sbjct: 456 EKHRRLLMNKFCGRYLRDKYLHRFIIY 482


>gi|218184757|gb|EEC67184.1| hypothetical protein OsI_34054 [Oryza sativa Indica Group]
          Length = 506

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
             T RSG  H P FT  VE++G+        +K+ AE+ AA+     L++ 
Sbjct: 98  YTTERSGLGHLPVFTCTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQL 148


>gi|7229534|gb|AAF42866.1|AF225925_1 staufen [Musca domestica]
          Length = 985

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         ++ +Y++T  +GP H  RFTV +++             + A+ +AA 
Sbjct: 290 PMCLVNDLARFNKISFQYRLTGENGPAHCKRFTVTLKLGDEEY-MAEGFKIKEAQHMAAK 348

Query: 218 EVLKR 222
           E + +
Sbjct: 349 EAILK 353



 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GP H   FT    + G    +     K+ +++ AA ++L+   
Sbjct: 603 DGPAHMRTFTTACIV-GQIVTEAEGTGKKISKKKAAQKMLEELK 645



 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSG---PDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           +  T+L EW        P +K+   +G        +F V V    L   +G+  SK++A 
Sbjct: 724 NPITKLVEWCQHNKEKEPIFKIITEAGGKERARQRQFVVEVCTKDLTV-RGVGNSKKSAR 782

Query: 213 QVAAAEVLKREGIWT 227
           + AA  +L   G+ T
Sbjct: 783 RNAAQNMLLALGVDT 797


>gi|115482562|ref|NP_001064874.1| Os10g0480500 [Oryza sativa Japonica Group]
 gi|75261835|sp|Q9AV50|DRB6_ORYSJ RecName: Full=Double-stranded RNA-binding protein 6; AltName:
           Full=dsRNA-binding protein 5; Short=OsDRB5; AltName:
           Full=dsRNA-binding protein 6
 gi|13384384|gb|AAK21352.1|AC024594_16 putative extensin [Oryza sativa Japonica Group]
 gi|31432702|gb|AAP54300.1| Double-stranded RNA binding motif family protein, expressed [Oryza
           sativa Japonica Group]
 gi|113639483|dbj|BAF26788.1| Os10g0480500 [Oryza sativa Japonica Group]
 gi|125575161|gb|EAZ16445.1| hypothetical protein OsJ_31914 [Oryza sativa Japonica Group]
 gi|215694820|dbj|BAG90011.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 514

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
             T RSG  H P FT  VE++G+        +K+ AE+ AA+     L++ 
Sbjct: 106 YTTERSGLGHLPVFTCTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQL 156


>gi|326427167|gb|EGD72737.1| hypothetical protein PTSG_04466 [Salpingoeca sp. ATCC 50818]
          Length = 2717

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 6    YSTLEKRIGYAFA--NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             + L + +G+     NR+LL +ALTH S  ++   + E+L  +G   + LL         
Sbjct: 2120 IAPLAEHLGFTGPSCNRALLLEALTHRSFLNNQLGNNEKLALIGRLCVRLLCIDKFVQTQ 2179

Query: 64   DSAKE-GELSVRFNSLVSAE-TCSQVARELDLASFIRVSSD 102
            D+A          + +VS E    +      +  +I   S 
Sbjct: 2180 DNAPSVSSWDDICDEVVSTELLVQKAVDMFGMLPYILHDSG 2220


>gi|241779179|ref|XP_002399859.1| tar RNA-binding protein, putative [Ixodes scapularis]
 gi|215508538|gb|EEC17992.1| tar RNA-binding protein, putative [Ixodes scapularis]
          Length = 273

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE         P Y+     G  H+  F +   ++ L+   G   SKR A++ A
Sbjct: 102 NPVGALQELCMKLRWRPPFYETVIEEGLPHERTFGISCLVNNLSE-MGKGKSKRLAKRQA 160

Query: 216 AAEVLK 221
           A ++++
Sbjct: 161 AYKMIQ 166


>gi|281206201|gb|EFA80390.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 804

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 25/68 (36%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + +    EL       F +  +++     GP H P F   + ++          SK+ AE
Sbjct: 716 YPKFDFEELLSKCRVYFQLDTKFETKHVGGPPHQPEFICDLYLNNELKETCKGSSKKDAE 775

Query: 213 QVAAAEVL 220
              + + L
Sbjct: 776 DKVSRQAL 783


>gi|270003897|gb|EFA00345.1| hypothetical protein TcasGA2_TC003184 [Tribolium castaneum]
          Length = 1222

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219
                  K            +GP H  RF   V I G +    G   +K+ A+  AA + 
Sbjct: 7   FLHQFCQKTKKEQPQFEVRPTGPKHRQRFLCEVRIDGYSYVGAGNSTNKKDAQSNAARDF 66

Query: 220 ---LKREGI 225
              L REGI
Sbjct: 67  VSYLVREGI 75


>gi|91078338|ref|XP_973454.1| PREDICTED: similar to maleless protein [Tribolium castaneum]
          Length = 1220

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219
                  K            +GP H  RF   V I G +    G   +K+ A+  AA + 
Sbjct: 7   FLHQFCQKTKKEQPQFEVRPTGPKHRQRFLCEVRIDGYSYVGAGNSTNKKDAQSNAARDF 66

Query: 220 ---LKREGI 225
              L REGI
Sbjct: 67  VSYLVREGI 75


>gi|126722609|ref|NP_001075682.1| interferon-induced, double-stranded RNA-activated protein kinase
           [Oryctolagus cuniculus]
 gi|71068410|gb|AAZ23127.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Oryctolagus cuniculus]
          Length = 547

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E    +  GP    RF     I       G+  +K+ A+Q+AA     + 
Sbjct: 116 VNYEPCELWEQGP---KRFQYKCRIGLKVYGTGIGSTKQEAKQLAAKSAYHKI 165


>gi|301768411|ref|XP_002919630.1| PREDICTED: protein SON-like [Ailuropoda melanoleuca]
          Length = 2336

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2247 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2306

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2307 TAATVVLQAMGL 2318


>gi|297287594|ref|XP_001093086.2| PREDICTED: protein SON-like [Macaca mulatta]
          Length = 2140

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2051 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2110

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2111 TAATVVLQAMGL 2122


>gi|296491682|gb|DAA33715.1| SON DNA-binding protein [Bos taurus]
          Length = 2136

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2047 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2106

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2107 TAATVVLQAMGL 2118


>gi|296232103|ref|XP_002807816.1| PREDICTED: LOW QUALITY PROTEIN: protein SON-like [Callithrix jacchus]
          Length = 2360

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2271 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2330

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2331 TAATVVLQAMGL 2342


>gi|193787107|dbj|BAG52313.1| unnamed protein product [Homo sapiens]
          Length = 579

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
           +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 490 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 549

Query: 214 VAAAEVLKREGI 225
            AA  VL+  G+
Sbjct: 550 TAATVVLQAMGL 561


>gi|167427274|gb|ABZ80253.1| SON DNA-binding protein isoform F (predicted) [Callithrix jacchus]
          Length = 2454

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2365 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2424

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2425 TAATVVLQAMGL 2436


>gi|119630222|gb|EAX09817.1| SON DNA binding protein, isoform CRA_d [Homo sapiens]
          Length = 2482

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2393 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2452

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2453 TAATVVLQAMGL 2464


>gi|119630227|gb|EAX09822.1| SON DNA binding protein, isoform CRA_h [Homo sapiens]
          Length = 2459

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2429

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2430 TAATVVLQAMGL 2441


>gi|114683930|ref|XP_531438.2| PREDICTED: SON DNA-binding protein isoform 10 [Pan troglodytes]
          Length = 2459

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2429

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2430 TAATVVLQAMGL 2441


>gi|114683936|ref|XP_001165875.1| PREDICTED: similar to SON DNA binding protein isoform A isoform 7
            [Pan troglodytes]
          Length = 2140

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2051 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2110

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2111 TAATVVLQAMGL 2122


>gi|74001159|ref|XP_857396.1| PREDICTED: similar to SON DNA-binding protein isoform A isoform 19
            [Canis familiaris]
          Length = 2145

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2056 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2115

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2116 TAATVVLQAMGL 2127


>gi|74001165|ref|XP_535583.2| PREDICTED: similar to SON protein (SON3) (Negative regulatory
            element-binding protein) (NRE-binding protein) (DBP-5)
            (Bax antagonist selected in saccharomyces 1) (BASS1)
            isoform 2 [Canis familiaris]
          Length = 2464

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2375 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2434

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2435 TAATVVLQAMGL 2446


>gi|74001153|ref|XP_857275.1| PREDICTED: similar to SON DNA-binding protein isoform G isoform 16
            [Canis familiaris]
          Length = 1442

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 1353 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 1412

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 1413 TAATVVLQAMGL 1424


>gi|139948494|ref|NP_001077163.1| SON DNA-binding protein [Bos taurus]
 gi|61966462|emb|CAG47115.1| SON DNA-binding protein [Bos taurus]
          Length = 2136

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2047 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2106

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2107 TAATVVLQAMGL 2118


>gi|17046373|gb|AAL34497.1|AF380179_1 SON DNA binding protein isoform A [Homo sapiens]
          Length = 2140

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2051 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2110

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2111 TAATVVLQAMGL 2122


>gi|36546|emb|CAA45282.1| son-a [Homo sapiens]
          Length = 1523

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 1363 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 1422

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 1423 TAATVVLQAMGL 1434


>gi|328857530|gb|EGG06646.1| hypothetical protein MELLADRAFT_63275 [Melampsora larici-populina
           98AG31]
          Length = 400

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 4/162 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            A   + LE  + Y F N++LL+K L         + ++ +LE++GD +LGL  +  L  
Sbjct: 239 KASDLNALETSLKYRFHNKTLLQKVL----WPDPAERTFRKLEWIGDCLLGLWSAERLAE 294

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                ++ +        ++  T      +  L    ++             +    V   
Sbjct: 295 MGTETQKKKGLGLAFIELNCNTTLAAWADRWLHPHKQLVKPKIGTGDKVCKASANMVECL 354

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
           +       G +    +   +   +      +    ++     
Sbjct: 355 VFVLFIDCGSVFGPESTFYQVLDRWFYNDKERNTVSQEHFTN 396


>gi|82582945|gb|ABB84398.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 22/54 (40%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH PRFT  + ISG   A     SK+ A   A A  L
Sbjct: 102 MMTHRPLEFSETRAGGEDHCPRFTCTITISGKVVAVADGASKKLARHTACASAL 155


>gi|293334643|ref|NP_001168634.1| hypothetical protein LOC100382420 [Zea mays]
 gi|223949721|gb|ACN28944.1| unknown [Zea mays]
          Length = 623

 Score = 51.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F+V V  +      G+  ++  A+  AA + L+  
Sbjct: 566 FSVEVLFNNEKIGIGVGKTRDEAQVQAAEKALQNL 600


>gi|326533226|dbj|BAJ93585.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 932

 Score = 50.7 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 20/36 (55%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++ V I G    +G+  +++ A++ AA   L+  
Sbjct: 718 QFSIEVWIVGEKVGEGIGSTRKEAQRQAAEISLRNL 753


>gi|12849779|dbj|BAB28477.1| unnamed protein product [Mus musculus]
          Length = 313

 Score = 50.7 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 1/103 (0%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +  AA+ +          V         K  K + +    LQE A       PEY ++ 
Sbjct: 90  RAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQ 149

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   +T +  +       G   S + A++ AA + L +
Sbjct: 150 EGGPAHKREYTTICRLE-SFMETGKGASNKQAKRNAAEKFLAK 191



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 62  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100


>gi|226507212|ref|NP_001141877.1| hypothetical protein LOC100274020 [Zea mays]
 gi|194706274|gb|ACF87221.1| unknown [Zea mays]
          Length = 392

 Score = 50.7 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             T RSGP H P F+  VE++GL+ A     +K+ AE+ AA        
Sbjct: 106 YTTVRSGPGHSPVFSSTVELAGLSFAGDPARTKKQAEKNAAMAAWSSLK 154



 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAEQVAAAEVLKRE 223
             +    V  R GPDH PRF   V  +G         S     R AE  AA   L R 
Sbjct: 14  CFSLPSYVCTREGPDHAPRFRAAVTFNGETF---EGPSGCTTLRQAEHAAAEVALARL 68


>gi|296085908|emb|CBI31232.3| unnamed protein product [Vitis vinifera]
          Length = 494

 Score = 50.7 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 18/49 (36%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             T +SG  H P F   VEI G         +K+ AE  AA        
Sbjct: 256 YSTEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLAEMNAAKAAYTHLK 304



 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223
            P    T + GP H+P F   V + GL+ +      S + A+  AA   ++  
Sbjct: 16  NPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAAGLAIQYL 68



 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 1/77 (1%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDC 206
            ++ +  +       +    K  +          GP H+ RF   V I            
Sbjct: 149 CQTPEGMQHLYKTQLQTYAQKRNLPLPMYSFESIGPSHNCRFKSKVTIEEQTYESPDFFP 208

Query: 207 SKRAAEQVAAAEVLKRE 223
           + + AE  AA   L   
Sbjct: 209 TLKDAEHAAAKLALMSL 225


>gi|225439221|ref|XP_002270719.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 581

 Score = 50.7 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 18/49 (36%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             T +SG  H P F   VEI G         +K+ AE  AA        
Sbjct: 329 YSTEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLAEMNAAKAAYTHLK 377



 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223
            P    T + GP H+P F   V + GL+ +      S + A+  AA   ++  
Sbjct: 16  NPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAAGLAIQYL 68



 Score = 43.0 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 15/51 (29%), Gaps = 1/51 (1%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
                   GP H+ RF   V I            + + AE  AA   L   
Sbjct: 248 PMYSFESIGPSHNCRFKSKVTIEEQTYESPDFFPTLKDAEHAAAKLALMSL 298


>gi|242062442|ref|XP_002452510.1| hypothetical protein SORBIDRAFT_04g027200 [Sorghum bicolor]
 gi|241932341|gb|EES05486.1| hypothetical protein SORBIDRAFT_04g027200 [Sorghum bicolor]
          Length = 934

 Score = 50.7 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++ V I G    +G+  ++R A+  AA   L+  
Sbjct: 721 QFSIEVWIVGEKVGEGIGRTRREAQHKAAEMSLRNL 756


>gi|90078150|dbj|BAE88755.1| unnamed protein product [Macaca fascicularis]
          Length = 272

 Score = 50.7 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           G      F + V++     A+G   +K+ A++ AA  +L+  G
Sbjct: 7   GLPRRREFVMQVKVGNHT-AEGAGTNKKVAKRNAAENMLEILG 48


>gi|195373462|ref|XP_002046012.1| GM19663 [Drosophila sechellia]
 gi|194122928|gb|EDW44971.1| GM19663 [Drosophila sechellia]
          Length = 267

 Score = 50.7 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++  V ++ L    G   SK+ A+  AA E L+  
Sbjct: 25  YSATVSVNNLKYGTGYGTSKKQAKSEAARETLEIL 59


>gi|301170812|dbj|BAJ12020.1| virus interferon resistance [Orf virus]
 gi|301170814|dbj|BAJ12021.1| virus interferon resistance [Orf virus]
 gi|301170820|dbj|BAJ12024.1| virus interferon resistance [Orf virus]
 gi|301170822|dbj|BAJ12025.1| virus interferon resistance [Orf virus]
 gi|301170834|dbj|BAJ12031.1| virus interferon resistance [Orf virus]
 gi|301170836|dbj|BAJ12032.1| virus interferon resistance [Orf virus]
 gi|301170838|dbj|BAJ12033.1| virus interferon resistance [Orf virus]
 gi|301170842|dbj|BAJ12035.1| virus interferon resistance [Orf virus]
 gi|301170844|dbj|BAJ12036.1| virus interferon resistance [Orf virus]
 gi|301170846|dbj|BAJ12037.1| virus interferon resistance [Orf virus]
 gi|301170848|dbj|BAJ12038.1| virus interferon resistance [Orf virus]
 gi|301170850|dbj|BAJ12039.1| virus interferon resistance [Orf virus]
          Length = 183

 Score = 50.7 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH PRFT  + ISG   A     SK+ A   A +  L
Sbjct: 119 MMTHRPLEFCETRSGGEDHCPRFTCTITISGKVVAAADGASKKLARHTACSSAL 172


>gi|37594908|gb|AAQ94313.1| interferon resistance protein [Orf virus]
          Length = 183

 Score = 50.7 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH PRFT  + ISG   A     SK+ A   A +  L
Sbjct: 119 MMTHRPLEFCETRSGGEDHCPRFTCTITISGKVVAAADGASKKLARHTACSSAL 172


>gi|37594906|gb|AAQ94312.1| interferon resistance protein [Orf virus]
          Length = 183

 Score = 50.7 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH PRFT  + ISG   A     SK+ A   A +  L
Sbjct: 119 MMTHRPLEFCETRSGGEDHCPRFTCTITISGKVVAAADGASKKLARHTACSSAL 172


>gi|258615164|ref|ZP_05712934.1| ribonuclease III [Enterococcus faecium DO]
          Length = 93

 Score = 50.7 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                D KT+LQE       V+ EY++    GP H+  F + V +       G   SK+
Sbjct: 21  FSHEMDHKTKLQEVLQKSGDVSIEYRLINEEGPAHERVFWIEVYVDDQLIGTGQGKSKK 79


>gi|221236967|gb|ACM16036.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Aotus
           trivirgatus]
          Length = 549

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E   +  +GP     F    ++       G   +K+ A+Q+AA     + 
Sbjct: 116 VNYEQCASGVNGPAG---FHYKCKVGQKEYGIGTGSTKQEAKQMAAKLAYLQI 165



 Score = 36.4 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 12/26 (46%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMD 205
            SGP HD RFT  V I G    +   
Sbjct: 32  NSGPPHDRRFTFQVIIDGREFPEAEG 57


>gi|145349136|ref|XP_001418996.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579226|gb|ABO97289.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 656

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 53/196 (27%), Gaps = 19/196 (9%)

Query: 33  SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD 92
            H      E    +GD+I G  +   +  +      GE + +++ + S  + +Q+  E  
Sbjct: 381 QHVSTSDVEMHALIGDKIFGAALLEEIVGNRLCKDTGEATRQYSEVASNASMAQLVSE-- 438

Query: 93  LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                             +    A  +      +         G    +   +  + +  
Sbjct: 439 -------CLPQHVQGGREVEEHSAGTLVEAAVYMVNQMA---GGPQAVQQLAKWFVYNVV 488

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGL------APAQGMD 205
                +            +          G  DH+P F                    + 
Sbjct: 489 VEGKKQRRFTNPKGLIIELNGHTMSHRIEGTADHEPAFQARCVWPKEAPREQQRETTAIG 548

Query: 206 CSKRAAEQVAAAEVLK 221
            SK+ AE  AA E+L+
Sbjct: 549 KSKKEAEANAAKEMLE 564


>gi|328708088|ref|XP_001949570.2| PREDICTED: 39S ribosomal protein L44, mitochondrial-like
           [Acyrthosiphon pisum]
          Length = 348

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 74/236 (31%), Gaps = 21/236 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI---------------SHSYQESYERLEFLGDRI 50
                KR+G  F N +LL++ALT  S                        + L   G   
Sbjct: 62  IYAFSKRLGEEFNN-NLLQQALTERSYIIREEERQKNVGIEQPTLNLSDNKELVSKGSDF 120

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           +  ++   L        E  +      L S ET S V+  +  +  I  +          
Sbjct: 121 IDDIVKRYLRTVLPRLPEEGIIGIHKYLTSIETLSHVSFHIGTSELILCAEF--PVEKPT 178

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
           ++++   ++ +LI +            F+      + L       +    L E       
Sbjct: 179 LSNVLKSIIAALIESSGDSRAALFVRDFIITQIADKDLHQFWEPEEPIKLLSEILARDGI 238

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLA--PAQGMDCSKRAAEQVAAAEVLKRE 223
            +PE ++   SG +     F V +           G   +   A ++AA + L++ 
Sbjct: 239 QSPEPRLIGCSGKNTILACFRVGLYTPDNKRMIGLGFGETVDIAHEMAARDSLRQL 294


>gi|224130800|ref|XP_002328379.1| predicted protein [Populus trichocarpa]
 gi|222838094|gb|EEE76459.1| predicted protein [Populus trichocarpa]
          Length = 159

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             T RSGP H P F+  VE++G++       +K+ A++ AA        
Sbjct: 106 YTTIRSGPGHVPVFSCNVELAGMSFTGESARTKKQAQKNAAMAAWSALK 154



 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQVAAAEVLKRE 223
                     R GPDH PRF   V  +G         S  R AE  AA   L   
Sbjct: 14  CFNLPSYSCIREGPDHAPRFKSTVNFNGETFESPTFYSTLRLAEHAAAEVALNTL 68


>gi|33415071|gb|AAQ18043.1| double-stranded RNA-binding protein [Orf virus]
          Length = 183

 Score = 50.7 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH PRFT  + ISG   +     SK+ A   A +  L
Sbjct: 119 MMTRRPLEFCETRSGGEDHCPRFTCTITISGKVVSVADGASKKLARHTACSSAL 172


>gi|31096345|gb|AAP43510.1| E3L-like protein [Orf virus]
 gi|41018507|gb|AAR98115.1| ORF020 dsRNA-binding PKR inhibitor [Orf virus]
          Length = 183

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                + E+  T   G DH PRFT  + ISG   +     SK+ A   A +  L
Sbjct: 119 MMTRRSLEFCETRSGGEDHCPRFTCTITISGKVVSVADGASKKLARHTACSSAL 172


>gi|3021546|emb|CAA10953.1| OV20.0L [Orf virus]
          Length = 183

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                + E+  T   G DH PRFT  + ISG   +     SK+ A   A +  L
Sbjct: 119 MMTRRSLEFCETRSGGEDHCPRFTCTITISGKVVSVADGASKKLARHTACSSAL 172


>gi|222641889|gb|EEE70021.1| hypothetical protein OsJ_29958 [Oryza sativa Japonica Group]
          Length = 325

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
             T RSGP H P F+  VE++G++ A     +K+ AE+ AA      LK+ 
Sbjct: 106 YTTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQM 156



 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
             +    V  R GPDH PRF   V  +G          + R AE  AA   L R 
Sbjct: 14  CFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAAEVALARL 68


>gi|215764986|dbj|BAG86683.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 357

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
             T RSGP H P F+  VE++G++ A     +K+ AE+ AA      LK+ 
Sbjct: 106 YTTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQM 156



 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
             +    V  R GPDH PRF   V  +G          + R AE  AA   L R 
Sbjct: 14  CFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAAEVALARL 68


>gi|166240125|ref|XP_647462.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4]
 gi|165988755|gb|EAL73658.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4]
          Length = 1385

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 21/46 (45%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             T   G +H+  F  +V ++G         +K+ +E+  A  +L+
Sbjct: 27  YHTEYKGSEHNKDFKSIVIVNGKEIESDWKKTKKESEKDCAKRILE 72



 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 61/180 (33%), Gaps = 22/180 (12%)

Query: 18   ANRSLLEKALTHSSIS----------------HSYQESYERLEFLGDRILGLLISTLLFN 61
             +  +L +  TH S                    Y    +RLEFLGD +L L+ +  LF 
Sbjct: 1056 KSAKILREVFTHPSTKTIPKRTLTQLGIFGKYQPYLGDNQRLEFLGDSVLKLVSTIYLFF 1115

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
             +    EG LS   +     +    V++ L L   +R +++            QADV+E+
Sbjct: 1116 KYPKMSEGFLSQTRSDFTKNDHLLDVSKRLGLEEILRFTTEEEFR------KPQADVIEA 1169

Query: 122  LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            LI A+Y+D G   A      +                 E       +  +         S
Sbjct: 1170 LIGAVYIDRGFFEAYKLTVCWIFDEPDAEYPIYNTKFEETLAHQEIRAFLDGIGVHISHS 1229



 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 61/161 (37%), Gaps = 5/161 (3%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
                   IG   ++ SLLE+AL      HS  +SY+RLE++GD +L   +S  L+  F  
Sbjct: 1215 IRAFLDGIGVHISHSSLLEEALCFPYSFHSASKSYQRLEYVGDAVLDFFVSDFLYATFPL 1274

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            A+EG+L+   + LV     S ++R+L         +  +    +       D +ES I  
Sbjct: 1275 AQEGQLTDYRSRLVRNSNLSSISRKL-----CLPPTVSKGIRDTLPIKKLGDYLESFIGC 1329

Query: 126  LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
             ++D       T    Y                       H
Sbjct: 1330 CFVDTTQSFEYTKSLVYKYLDLRIDNPLFEFPSRSAYLSIH 1370


>gi|125564316|gb|EAZ09696.1| hypothetical protein OsI_31979 [Oryza sativa Indica Group]
          Length = 357

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
             T RSGP H P F+  VE++G++ A     +K+ AE+ AA      LK+ 
Sbjct: 106 YTTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQM 156



 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
             +    V  R GPDH PRF   V  +G          + R AE  AA   L R 
Sbjct: 14  CFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAAEVALARL 68


>gi|259490370|ref|NP_001159196.1| hypothetical protein LOC100304282 [Zea mays]
 gi|223942573|gb|ACN25370.1| unknown [Zea mays]
          Length = 286

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++ V I G    +G+  ++R A++ AA   L+  
Sbjct: 72  QFSIEVWIVGEKFGEGIGRTRREAQRQAAEMSLRNL 107


>gi|239790094|dbj|BAH71631.1| ACYPI001280 [Acyrthosiphon pisum]
          Length = 348

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 73/236 (30%), Gaps = 21/236 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI---------------SHSYQESYERLEFLGDRI 50
                KR+G  F N  LL++ALT  S                        + L   G   
Sbjct: 62  IYAFSKRLGEEFNN-DLLQQALTERSYIIREEERQKNVGIEQPTLNLSDNKELVSKGSDF 120

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           +  ++   L        E  +      L S ET S V+  +  +  I  +          
Sbjct: 121 IDDIVKRYLRTVLPRLPEEGIIGIHKYLTSIETLSHVSFHIGTSELILCAEF--PVEKPT 178

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
           ++++   ++ +LI +            F+      + L       +    L E       
Sbjct: 179 LSNVLKSIIAALIESSGDSRAALFVRDFIITQIADKDLHQFWEPEEPIKLLSEILARDGI 238

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLA--PAQGMDCSKRAAEQVAAAEVLKRE 223
            +PE ++   SG +     F V +           G   +   A ++AA + L++ 
Sbjct: 239 QSPEPRLIGCSGKNTILACFRVGLYTPDNKRMIGLGFGETVDIAHEMAARDSLRQL 294


>gi|222616496|gb|EEE52628.1| hypothetical protein OsJ_34969 [Oryza sativa Japonica Group]
          Length = 781

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220
             TF+ GP H+P F   V I+  +        +++AAEQ AA   L
Sbjct: 52  YHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVAL 97



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F   VEI G+        +K+ AE  AA   L
Sbjct: 506 FICTVEIGGIQYIGAAARTKKDAEIKAARTAL 537


>gi|222615377|gb|EEE51509.1| hypothetical protein OsJ_32675 [Oryza sativa Japonica Group]
          Length = 830

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220
             TF+ GP H+P F   V I+  +        +++AAEQ AA   L
Sbjct: 52  YHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVAL 97



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F   VEI G+        +K+ AE  AA   L
Sbjct: 506 FICTVEIGGIQYIGAAARTKKDAEIKAARTAL 537


>gi|218186287|gb|EEC68714.1| hypothetical protein OsI_37196 [Oryza sativa Indica Group]
          Length = 2010

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220
              TF+ GP H+P F   V I+  +        +++AAEQ AA   L
Sbjct: 1287 YHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVAL 1332



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 189  FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            F   VEI G+        +K+ AE  AA   L
Sbjct: 1735 FICTVEIGGIQYIGAAARTKKDAEIKAARTAL 1766


>gi|218186280|gb|EEC68707.1| hypothetical protein OsI_37189 [Oryza sativa Indica Group]
          Length = 474

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220
             TF+ GP H+P F   V I+  +        +++AAEQ AA   L
Sbjct: 52  YHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVAL 97


>gi|255946916|ref|XP_002564225.1| Pc22g01810 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591242|emb|CAP97469.1| Pc22g01810 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 151

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 4/140 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LEK+I Y F +R LL +AL  S  +   Q+  + L   GD +L L+++  +    ++
Sbjct: 15  IEVLEKKIQYRFVDRELLREALQAS--TDRNQDGNKTLALFGDLVLDLVLA--ISGRKEN 70

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
              G++             S+   +L +  FI  +        + M +    +V ++   
Sbjct: 71  KPRGKIKEMSTQKAGNVHLSKQGFDLGIDKFIVKNPSQTVVGINVMATTMEAIVGAVYLD 130

Query: 126 LYLDGGIEVAGTFVDKYWKQ 145
                               
Sbjct: 131 CNKQIAPCADVMVALGLSWP 150


>gi|198452925|ref|XP_001358999.2| GA14761 [Drosophila pseudoobscura pseudoobscura]
 gi|198132136|gb|EAL28142.2| GA14761 [Drosophila pseudoobscura pseudoobscura]
          Length = 651

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 1/75 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                   +   +          T              P ++ +V ++ L    G   SK
Sbjct: 371 WIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSAIVSVNNLKYGTGYGTSK 429

Query: 209 RAAEQVAAAEVLKRE 223
           + A+  AA E L+  
Sbjct: 430 KQAKSEAARETLEIL 444


>gi|195144392|ref|XP_002013180.1| GL23989 [Drosophila persimilis]
 gi|194102123|gb|EDW24166.1| GL23989 [Drosophila persimilis]
          Length = 387

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 1/75 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                   +   +          T              P ++ +V ++ L    G   SK
Sbjct: 107 WIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATP-YSAIVSVNNLKYGTGYGTSK 165

Query: 209 RAAEQVAAAEVLKRE 223
           + A+  AA E L+  
Sbjct: 166 KQAKSEAARETLEIL 180


>gi|189190408|ref|XP_001931543.1| double-strand-specific ribonuclease Pac1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187973149|gb|EDU40648.1| double-strand-specific ribonuclease Pac1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 362

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 72/210 (34%), Gaps = 25/210 (11%)

Query: 23  LEKA-LTHSSI-----------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           L +A  TH S                   YERLE LGD  + L+ S  L+N F      E
Sbjct: 127 LHEAVFTHRSAIFDPSIPGSALGQDLSLDYERLELLGDAYIELIASRALYNRFPHVDVPE 186

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL-- 128
           L +    LV   T  + +        ++  +   K        + AD+VE+ +AA+ L  
Sbjct: 187 LCMWRERLVENSTLGKFSHAYGFPDRLKHRAMWDKTS-KQYQKVVADIVEAYVAAVVLSD 245

Query: 129 -DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD- 186
            D G E A  ++ + W  + L   +   +      E      G   +          +D 
Sbjct: 246 PDNGFETAEAWLTELWAPQLLGFREKIIENPQARNELNRLVLGKDVKLITKEEKPMSYDE 305

Query: 187 ---PRFTVVVEISGLAP-----AQGMDCSK 208
                + + + ++G          G   +K
Sbjct: 306 NSIQCYYIGIYLTGWGYKDEWLGSGHGQNK 335


>gi|115483791|ref|NP_001065557.1| Os11g0109900 [Oryza sativa Japonica Group]
 gi|122221791|sp|Q0IV63|DRB7_ORYSJ RecName: Full=Double-stranded RNA-binding protein 7; AltName:
           Full=dsRNA-binding protein 7
 gi|108863922|gb|ABG22335.1| Double-stranded RNA binding motif family protein, expressed [Oryza
           sativa Japonica Group]
 gi|113644261|dbj|BAF27402.1| Os11g0109900 [Oryza sativa Japonica Group]
 gi|215686684|dbj|BAG88937.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215768461|dbj|BAH00690.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 473

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220
             TF+ GP H+P F   V I+  +        +++AAEQ AA   L
Sbjct: 52  YHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVAL 97



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F   VEI G+        +K+ AE  AA   L
Sbjct: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTAL 180


>gi|115486946|ref|NP_001065960.1| Os12g0109900 [Oryza sativa Japonica Group]
 gi|122234185|sp|Q0IQN6|DRB8_ORYSJ RecName: Full=Double-stranded RNA-binding protein 8; AltName:
           Full=dsRNA-binding protein 1; Short=OsDRB1; AltName:
           Full=dsRNA-binding protein 8
 gi|108862090|gb|ABG21849.1| Double-stranded RNA binding motif family protein, expressed [Oryza
           sativa Japonica Group]
 gi|113648467|dbj|BAF28979.1| Os12g0109900 [Oryza sativa Japonica Group]
          Length = 424

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220
             TF+ GP H+P F   V I+  +        +++AAEQ AA   L
Sbjct: 52  YHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVAL 97



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F   VEI G+        +K+ AE  AA   L
Sbjct: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTAL 180


>gi|62912408|gb|AAY21792.1| dsRNA binding protein RBP [Oryza sativa Japonica Group]
          Length = 410

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220
             TF+ GP H+P F   V I+  +        +++AAEQ AA   L
Sbjct: 52  YHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVAL 97



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F   VEI G+        +K+ AE  AA   L
Sbjct: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTAL 180


>gi|9229939|dbj|BAB00641.1| dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
          Length = 425

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVL 220
             TF+ GP H+P F   V I+  +        +++AAEQ AA   L
Sbjct: 52  YHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVAL 97


>gi|218194135|gb|EEC76562.1| hypothetical protein OsI_14382 [Oryza sativa Indica Group]
          Length = 176

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 3/135 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +TL+ +I Y F    LL +A+TH+S S     +   L  LG        +         
Sbjct: 34  LATLQNQIAYRFHAPDLLRRAMTHASYSRENGRA---LAVLGLAASQSAAALRALAADHD 90

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A    +S R         C   A  + + S +RV++  +      +      ++ ++   
Sbjct: 91  ASASPVSRRARDASGEAACVAAAARVGIPSIVRVAAGTKPTAPPVVCGALRALIGAVAVD 150

Query: 126 LYLDGGIEVAGTFVD 140
                  E     + 
Sbjct: 151 ANSTHAAEEVFWKLH 165


>gi|156554791|ref|XP_001606035.1| PREDICTED: similar to staufen [Nasonia vitripennis]
          Length = 587

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              +G  H   F     +       G   SK+ +++ AA  +L+   
Sbjct: 211 VSETGKPHIRTFMTRCTVGDKV-TLGEGSSKKVSKKRAAELMLEELK 256


>gi|208690893|gb|ACI31222.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Saguinus
           labiatus]
          Length = 552

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E   +  +GP+    F    ++       G   +K+ A+Q+AA     + 
Sbjct: 116 VNYEQCASGVNGPEG---FHYKCKVGQKEYGIGTGSTKQEAKQLAAKLAYLQI 165



 Score = 40.3 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I G    +    S
Sbjct: 32  NSGPPHDRRFTFQVIIDGREFPEAEGRS 59


>gi|321468306|gb|EFX79291.1| hypothetical protein DAPPUDRAFT_24493 [Daphnia pulex]
          Length = 254

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE   +     P Y +   +G  H+  F +   +       G+  SK+ A++ A
Sbjct: 88  NPVGNLQELCISHRWAPPSYVLEGENGLPHEREFVITCVVENHQE-IGVGKSKKLAKRQA 146

Query: 216 AAEV 219
           A  +
Sbjct: 147 AYRM 150


>gi|170051834|ref|XP_001861946.1| R2D2 [Culex quinquefasciatus]
 gi|167872902|gb|EDS36285.1| R2D2 [Culex quinquefasciatus]
          Length = 314

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
            E+++    +    PE++    SGP H P F     +  +   +G+  +K+ A+QVA  E
Sbjct: 101 MEVRDICVQRNFEVPEFECVRSSGPSHAPEFEFECRVGNIVR-RGVHNTKKGAKQVACNE 159

Query: 219 VLKRE 223
           +LK  
Sbjct: 160 MLKTL 164



 Score = 37.2 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              F+  V   G     G   SK+ ++  AA  +LK  
Sbjct: 41  AKIFSTSVTALGQT-CVGHGRSKKDSKHAAALHMLKLL 77


>gi|156842019|ref|XP_001644379.1| hypothetical protein Kpol_1064p1 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115021|gb|EDO16521.1| hypothetical protein Kpol_1064p1 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 377

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKR 209
                +   EL      +    P  ++   SG     P F + V        +G   S +
Sbjct: 284 MFQFENPTRELATLCRREGFEQPISRLLAESGRLSKAPVFIIGVFSGNEKLGEGFGSSLK 343

Query: 210 AAEQVAAAEVLKR 222
            A+  AA + L +
Sbjct: 344 EAKARAATDALMK 356


>gi|115640588|ref|XP_787414.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115965191|ref|XP_001180563.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 878

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                 +      L         + P+Y++    GP H+  F+V + +           S
Sbjct: 97  NNMANTKEKTSMCLLNELARFNKLQPKYELVSEKGPPHEKIFSVCLTLGPQKYDS-SGAS 155

Query: 208 KRAAEQVAAAEVLKREGI 225
            + A+  AAA  L++ G+
Sbjct: 156 IKKAQHGAAASALEKCGL 173



 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               G  H   F +   + G    +    SK+ A++ AA  +L +  
Sbjct: 469 LDERGQPHLKIFKLQCTV-GEFNTESEGPSKKDAKRKAAELMLPKLK 514


>gi|158341043|ref|YP_001522210.1| exoribonuclease II [Acaryochloris marina MBIC11017]
 gi|158311284|gb|ABW32896.1| exoribonuclease II [Acaryochloris marina MBIC11017]
          Length = 623

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/186 (8%), Positives = 53/186 (28%), Gaps = 5/186 (2%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           + LE+L D +     ++++    +  +    S            + +   +    +    
Sbjct: 426 QVLEYLEDHLYD--AASIVSIALNQTEAWHSSAYVEVSHEPPFVTWIEILIGEQLWTTAK 483

Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
             +  +            +++   +  +      A         +      K R+  +  
Sbjct: 484 PGISMNKTGAKHQACLAWLKAKFESSLVPPEHREAPPIPQPSAPKPPPVIHKLRQYQEGH 543

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV--EISGLAP-AQGMDCSKRAAEQVAAA 217
                  +     ++        +H+  +      ++        G+  SK+ A+  AA 
Sbjct: 544 NCLSLLMEICQGFQWPQAEFEIVEHEQGYHCECRLKVDNEVITGSGIASSKKTAKHRAAR 603

Query: 218 EVLKRE 223
            V+++ 
Sbjct: 604 PVVEQL 609


>gi|302697477|ref|XP_003038417.1| hypothetical protein SCHCODRAFT_103556 [Schizophyllum commune H4-8]
 gi|300112114|gb|EFJ03515.1| hypothetical protein SCHCODRAFT_103556 [Schizophyllum commune H4-8]
          Length = 74

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 20/64 (31%)

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +          +      GP+    +TV   I G         +K  A+  AA + L 
Sbjct: 9   NHFQGLNQHAAVSWAERQAPGPNGTVVWTVKCNIRGETKGTASAPNKNTAKIEAAKQALA 68

Query: 222 REGI 225
             G+
Sbjct: 69  ALGV 72


>gi|255542426|ref|XP_002512276.1| hypothetical protein RCOM_1429110 [Ricinus communis]
 gi|223548237|gb|EEF49728.1| hypothetical protein RCOM_1429110 [Ricinus communis]
          Length = 568

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKRE 223
             T RSGP H P F+  VE++G++       +K+ A++ AA      LKR 
Sbjct: 106 YTTVRSGPGHVPVFSCTVELAGMSFTGEPARTKKQAQKNAAMAAWSALKRL 156



 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
                     R GPDH PRF   V  +G          + R AE  AA   L   
Sbjct: 14  CFNLPSYSCIREGPDHAPRFKATVNFNGETFESPAFCSTLRQAEHAAAEVALNTL 68


>gi|74001137|ref|XP_856935.1| PREDICTED: similar to SON DNA-binding protein isoform A isoform 9
           [Canis familiaris]
          Length = 152

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
           +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 63  KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 122

Query: 214 VAAAEVLKREGI 225
            AA  VL+  G+
Sbjct: 123 TAATVVLQAMGL 134


>gi|76157448|gb|ABA40474.1| SJCHGC03811 protein [Schistosoma japonicum]
          Length = 132

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ---- 202
            +       ++         A+F  T        +GP HD  F V V IS  +       
Sbjct: 1   MMFDRVTSMNSSPVFILNKRARFLNTTLSWTCKENGPYHDKVFHVNVVISHKSLNISETY 60

Query: 203 -GMDCSKRAAEQVAAAEVLK 221
            G   S + A+++AA   L+
Sbjct: 61  FGTGSSIKKAKRMAADTALQ 80


>gi|323336239|gb|EGA77510.1| Mrpl3p [Saccharomyces cerevisiae Vin13]
          Length = 390

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 2/109 (1%)

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
             ++ ++ A         V     D    ++  +           EL      +    P 
Sbjct: 261 RSIIAAIWAVTEQKDSQAVYRFIDDHIMSRKLDITKMFQFEQPTRELAMLCRREGLEKPV 320

Query: 175 YKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K+   SG     P F V V        +G   S + A+  AA + L +
Sbjct: 321 SKLVAESGRLSKSPVFIVHVFSGEETLGEGYGSSLKEAKARAATDALMK 369


>gi|323332013|gb|EGA73424.1| Mrpl3p [Saccharomyces cerevisiae AWRI796]
          Length = 390

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 2/109 (1%)

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
             ++ ++ A         V     D    ++  +           EL      +    P 
Sbjct: 261 RSIIAAIWAVTEQKDSQAVYRFIDDHIMSRKLDITKMFQFEQPTRELAMLCRREGLEKPV 320

Query: 175 YKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K+   SG     P F V V        +G   S + A+  AA + L +
Sbjct: 321 SKLVAESGRLSKSPVFIVHVFSGEETLGEGYGSSLKEAKARAATDALMK 369


>gi|323303562|gb|EGA57353.1| Mrpl3p [Saccharomyces cerevisiae FostersB]
          Length = 390

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 2/109 (1%)

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
             ++ ++ A         V     D    ++  +           EL      +    P 
Sbjct: 261 RSIIAAIWAVTEQKDSQAVYRFIDDHIMSRKLDITKMFQFEQPTRELAMLCRREGLEKPV 320

Query: 175 YKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K+   SG     P F V V        +G   S + A+  AA + L +
Sbjct: 321 SKLVAESGRLSKSPVFIVHVFSGEETLGEGYGSSLKEAKARAATDALMK 369


>gi|312374421|gb|EFR21981.1| hypothetical protein AND_15950 [Anopheles darlingi]
          Length = 306

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           ++++    +    PE+++    GP H P F     I  +   +G   +K+ A+Q+A  E+
Sbjct: 115 QVRDICVQRNFPLPEFELVRSYGPSHAPVFEFECRIRDIVR-RGSHSTKKGAKQIACQEM 173

Query: 220 LKRE 223
           +K  
Sbjct: 174 IKTL 177


>gi|6323666|ref|NP_013737.1| Mrpl3p [Saccharomyces cerevisiae S288c]
 gi|1350789|sp|P36516|RM03_YEAST RecName: Full=54S ribosomal protein L3, mitochondrial; AltName:
           Full=YmL3; Flags: Precursor
 gi|798935|emb|CAA89127.1| Mrlp3p [Saccharomyces cerevisiae]
 gi|51013573|gb|AAT93080.1| YMR024W [Saccharomyces cerevisiae]
 gi|151946185|gb|EDN64416.1| YmL30 [Saccharomyces cerevisiae YJM789]
 gi|190408263|gb|EDV11528.1| 60S ribosomal protein L3, mitochondrial precursor [Saccharomyces
           cerevisiae RM11-1a]
 gi|256273471|gb|EEU08405.1| Mrpl3p [Saccharomyces cerevisiae JAY291]
 gi|259148602|emb|CAY81847.1| Mrpl3p [Saccharomyces cerevisiae EC1118]
 gi|285814027|tpg|DAA09922.1| TPA: Mrpl3p [Saccharomyces cerevisiae S288c]
          Length = 390

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 2/109 (1%)

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
             ++ ++ A         V     D    ++  +           EL      +    P 
Sbjct: 261 RSIIAAIWAVTEQKDSQAVYRFIDDHIMSRKLDITKMFQFEQPTRELAMLCRREGLEKPV 320

Query: 175 YKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K+   SG     P F V V        +G   S + A+  AA + L +
Sbjct: 321 SKLVAESGRLSKSPVFIVHVFSGEETLGEGYGSSLKEAKARAATDALMK 369


>gi|328720070|ref|XP_003246941.1| PREDICTED: hypothetical protein LOC100572663 [Acyrthosiphon pisum]
          Length = 474

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +     A+G   SK+ A+Q+AA+ +LK+ 
Sbjct: 53  FKYSVNLD-KFVAEGKGSSKKEAKQLAASNLLKKI 86



 Score = 44.9 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +     A+G   SK+ A+ +AA+ +LK+ 
Sbjct: 291 FKYSVNLD-KFVAEGEATSKKEAKHLAASNLLKKI 324



 Score = 40.7 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V +     A+G   SKR A+  AA  +LK+ 
Sbjct: 172 FKYSVNLD-KIVAEGEGFSKREAKLWAATNLLKKI 205


>gi|208690897|gb|ACI31224.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Lagothrix lagotricha]
          Length = 552

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GP+    F    ++       G   +K+ A+Q+AA     + 
Sbjct: 127 GPEG---FHYKCKVGQKEYGIGTGSTKQEAKQLAAKLAYLQI 165



 Score = 40.3 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I G    +    S
Sbjct: 32  NSGPPHDRRFTFQVIIDGREFPEAEGRS 59


>gi|50897085|dbj|BAD34723.1| Dicer-related RNase III protein Dcr2p [Tetrahymena thermophila]
          Length = 1838

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 52/159 (32%), Gaps = 58/159 (36%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISH----------------------------- 34
            ++   +E  +GY F N +LL +A T  SI                               
Sbjct: 1528 VQLKEIESILGYTFQNINLLFQAFTLPSIESLCIQIPSLKNTNLNKLHQINNAIQKKENQ 1587

Query: 35   -----------------SYQESYE------------RLEFLGDRILGLLISTLLFNHFDS 65
                               ++S E            RLEFLGD +L L+I   LFN F +
Sbjct: 1588 GTFEKIDQISKENQNKIYQKDSNEWENLKNYNLCNQRLEFLGDAVLDLIIVEYLFNKFPN 1647

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
            +  GEL+    SLV  +T   +        FI  S    
Sbjct: 1648 SDPGELTQMKTSLVQNKTLCLINLMKGFYKFIIGSIQHN 1686


>gi|218191244|gb|EEC73671.1| hypothetical protein OsI_08218 [Oryza sativa Indica Group]
          Length = 937

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++ V I G    +G+  +++ A+  AA   L+  
Sbjct: 724 QFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNL 759


>gi|115447513|ref|NP_001047536.1| Os02g0639000 [Oryza sativa Japonica Group]
 gi|49388226|dbj|BAD25346.1| double-stranded RNA-binding domain (DsRBD)-containing protein-like
           [Oryza sativa Japonica Group]
 gi|49388720|dbj|BAD25901.1| double-stranded RNA-binding domain (DsRBD)-containing protein-like
           [Oryza sativa Japonica Group]
 gi|113537067|dbj|BAF09450.1| Os02g0639000 [Oryza sativa Japonica Group]
 gi|215695163|dbj|BAG90354.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222623318|gb|EEE57450.1| hypothetical protein OsJ_07667 [Oryza sativa Japonica Group]
          Length = 940

 Score = 50.3 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++ V I G    +G+  +++ A+  AA   L+  
Sbjct: 727 QFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNL 762


>gi|297818244|ref|XP_002877005.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
 gi|297322843|gb|EFH53264.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
          Length = 356

 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
           SGP H P F+  VE++G++       +K+ AE+ AA      L++ 
Sbjct: 111 SGPGHIPTFSCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKM 156



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223
                     R GPDH PRF   V  +G          + R AE  AA   L   
Sbjct: 14  CFNLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSAAEVALSAL 68


>gi|241643146|ref|XP_002409536.1| secreted protein, putative [Ixodes scapularis]
 gi|215501378|gb|EEC10872.1| secreted protein, putative [Ixodes scapularis]
          Length = 353

 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 15  YAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           YAF ++ LL +AL H + +       SYE L+F+G   L  +++  +  +    ++  + 
Sbjct: 192 YAFKDQDLLIRALLHPAKARQLGSSISYEPLDFIGHFALHFVLARHMVRNGTRKEKASMH 251

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
                 +  E C+ +A +  L  ++ +     
Sbjct: 252 NLMTEALRQEACAFLAAKNHLDLYVFLDDGQE 283


>gi|79420704|ref|NP_189329.3| DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA
           binding [Arabidopsis thaliana]
 gi|145322916|ref|NP_001030779.2| DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA
           binding [Arabidopsis thaliana]
 gi|75273549|sp|Q9LJF5|DRB3_ARATH RecName: Full=Double-stranded RNA-binding protein 3; AltName:
           Full=dsRNA-binding protein 3; Short=AtDRB3
 gi|11994159|dbj|BAB01188.1| unnamed protein product [Arabidopsis thaliana]
 gi|45773934|gb|AAS76771.1| At3g26932 [Arabidopsis thaliana]
 gi|62321583|dbj|BAD95129.1| putative protein [Arabidopsis thaliana]
 gi|332643724|gb|AEE77245.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
 gi|332643725|gb|AEE77246.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
          Length = 359

 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
           SGP H P F+  VE++G++       +K+ AE+ AA      L++ 
Sbjct: 111 SGPGHIPTFSCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKM 156



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223
             +       R GPDH PRF   V  +G          + R AE  AA   L   
Sbjct: 14  CFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSAAEVALSAL 68


>gi|296089027|emb|CBI38730.3| unnamed protein product [Vitis vinifera]
          Length = 1474

 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 1357 QLKDVINYPVPAAKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1413

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1414 EGQLTRMRQQMVSNMVLYQSALCKGLQSYIQ 1444


>gi|293335783|ref|NP_001169831.1| hypothetical protein LOC100383723 [Zea mays]
 gi|224031877|gb|ACN35014.1| unknown [Zea mays]
          Length = 310

 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++ V I G    +G+  ++R A++ AA   L+  
Sbjct: 96  QFSIEVWIVGEKVGEGIGRTRREAQRQAAEMSLRNL 131


>gi|326679494|ref|XP_686426.4| PREDICTED: double-stranded RNA-specific editase B2 [Danio rerio]
          Length = 743

 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            G      F + V + G    +G   SK+ A++ AA   L+  
Sbjct: 296 QGKRAHRSFIMAVRVDGR-IFEGSGRSKKQAKRQAAVCALQAL 337



 Score = 34.9 bits (78), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +Y++  ++GP H P F++ VE++GL   +G   +
Sbjct: 140 QYRMVSQTGPVHAPLFSIAVEVNGLTF-EGTGPT 172


>gi|94734595|emb|CAK10842.1| novel protein similar to vertebrate adenosine deaminase,
           RNA-specific, B2 (ADARB2) [Danio rerio]
          Length = 715

 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            G      F + V + G    +G   SK+ A++ AA   L+  
Sbjct: 271 QGKRAHRSFIMAVRVDGR-IFEGSGRSKKQAKRQAAVCALQAL 312



 Score = 34.9 bits (78), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +Y++  ++GP H P F++ VE++GL   +G   +
Sbjct: 115 QYRMVSQTGPVHAPLFSIAVEVNGLTF-EGTGPT 147


>gi|82582933|gb|ABB84392.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                + E+  T   G DH PRFT  ++IS    A+    SK+ A   A A  L
Sbjct: 102 MMTHRSLEFCETRSGGEDHCPRFTCTIKISKKVVAEADGASKKLARYAACASAL 155


>gi|332019072|gb|EGI59604.1| Double-stranded RNA-binding protein Staufen-like protein 2
           [Acromyrmex echinatior]
          Length = 358

 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                     +Y + +  G  H   FTV V + G    +G    K++A+Q AA ++L   
Sbjct: 134 QQRQIPTKDIQYDLIYDEGLPHKKIFTVKVSL-GSLCERGTGQCKKSAKQEAAKKMLLHL 192

Query: 224 G 224
            
Sbjct: 193 N 193



 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++  +F   V  +      G   SK+ A+  AA  +L   
Sbjct: 30  NYQKQFICNVACA-KLITHGTGNSKKEAKHNAAKNMLSLL 68


>gi|147898439|ref|NP_001085043.1| hypothetical protein LOC432110 [Xenopus laevis]
 gi|47506884|gb|AAH70985.1| MGC78846 protein [Xenopus laevis]
          Length = 772

 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I+G+    G   SK+ A+  AA   L+  
Sbjct: 541 FGASVIINGVTYGTGTASSKKLAKNKAARATLEIL 575


>gi|302771083|ref|XP_002968960.1| hypothetical protein SELMODRAFT_90770 [Selaginella moellendorffii]
 gi|300163465|gb|EFJ30076.1| hypothetical protein SELMODRAFT_90770 [Selaginella moellendorffii]
          Length = 128

 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           Y F + +LL+ ALTHSS S     +   L  LG  I+   +          A + EL   
Sbjct: 2   YKFNDSTLLQDALTHSSYSRH---NNGPLHLLGVSIIRASVYKHYLAKNRDATKEELEAM 58

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
            +SL S   C++ A  L L   IR  + +          + A    +L  A+ +DG  + 
Sbjct: 59  SSSLSSTTACARRASGLGLDKLIRADAPVD----RKSDKVLAVAFHALFGAIAMDGSADQ 114

Query: 135 AGTFVD 140
           A +   
Sbjct: 115 AMSVFW 120


>gi|17046379|gb|AAL34500.1|AF380182_1 SON DNA binding protein isoform D [Homo sapiens]
          Length = 147

 Score = 49.9 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
           +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 58  KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 117

Query: 214 VAAAEVLKREGI 225
            AA  VL+  G+
Sbjct: 118 TAATVVLQAMGL 129


>gi|116787066|gb|ABK24361.1| unknown [Picea sitchensis]
          Length = 346

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + P      + G  H P FT +VEI+G   A     SK+ A   AA + ++  
Sbjct: 97  NMPPPSYKFSKEGEAHCPTFTAIVEINGAFYAGDPANSKKDATNKAACKAIRAI 150


>gi|226958738|ref|NP_001153011.1| DiGeorge syndrome critical region gene 8 [Xenopus (Silurana)
           tropicalis]
 gi|169261414|gb|ACA52287.1| DiGeorge syndrome critical region 8 [Xenopus tropicalis]
          Length = 772

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 541 FGASVIIDGVTYGTGTASSKKLAKNKAARATLEIL 575


>gi|170172601|ref|NP_001116221.1| microprocessor complex subunit DGCR8 [Danio rerio]
 gi|122890881|emb|CAM13120.1| novel protein [Danio rerio]
          Length = 782

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 551 FGASVIIDGVTYGTGTASSKKLAKNKAARATLEIL 585


>gi|47227705|emb|CAG09702.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 842

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 586 FGASVIIDGVTYGTGTASSKKLAKNKAARATLEIL 620


>gi|326495676|dbj|BAJ85934.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 364

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223
             T RSGP H P F   VE++GL+ A     +K+ AE+ AA      LK+ 
Sbjct: 106 YTTVRSGPGHSPVFASSVELAGLSFAGDAARTKKQAEKNAAMTAWSALKQM 156



 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
             +    V  R GPDH PRF   V  +G          + R AE  AA   L R 
Sbjct: 14  CFSLPSYVCTREGPDHAPRFKATVTFNGETFHGPTCCTTLRQAEHAAAEVALARL 68


>gi|82582929|gb|ABB84390.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 21/54 (38%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH PRFT  + ISG         SK+ A   A A  L
Sbjct: 102 MMTHRPLEFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHTACASAL 155


>gi|82582921|gb|ABB84386.1| interferon resistance protein [Orf virus]
 gi|82582923|gb|ABB84387.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 21/54 (38%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH PRFT  + ISG         SK+ A   A A  L
Sbjct: 102 MMTHRPLEFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHTACASAL 155


>gi|82582939|gb|ABB84395.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 21/54 (38%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH PRFT  + ISG         SK+ A   A A  L
Sbjct: 102 MMTHRPLEFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHTACASAL 155


>gi|82582937|gb|ABB84394.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 21/54 (38%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH PRFT  + ISG         SK+ A   A A  L
Sbjct: 102 MMTHRPLEFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHTACASAL 155


>gi|66822085|ref|XP_644397.1| hypothetical protein DDB_G0274077 [Dictyostelium discoideum AX4]
 gi|66823323|ref|XP_645016.1| hypothetical protein DDB_G0273051 [Dictyostelium discoideum AX4]
 gi|50057720|emb|CAC41976.2| putative RNaseIII [Dictyostelium discoideum]
 gi|60472520|gb|EAL70472.1| hypothetical protein DDB_G0274077 [Dictyostelium discoideum AX4]
 gi|60473215|gb|EAL71163.1| hypothetical protein DDB_G0273051 [Dictyostelium discoideum AX4]
          Length = 1203

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 25/153 (16%)

Query: 16   AFANRS---LLEKALTHSSIS----------------HSYQESYERLEFLGDRILGLLIS 56
             F N +   +L + LTH S                    + + Y+RLEFLGD +L +  S
Sbjct: 882  KFKNNTNNQVLREVLTHPSTKVISERKPIEKDQFQSYRPFMKDYQRLEFLGDSVLKITSS 941

Query: 57   TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
              LF  FD+  EG LS +       E  ++++R +     +R+++              A
Sbjct: 942  LYLFKKFDNEGEGLLSKKREFYTKNEYLTELSRRIGFDYILRITTIGDHS------KPHA 995

Query: 117  DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149
            D++E+ I A+Y++ G + +  ++ K+    +  
Sbjct: 996  DLIEAFIGAIYIECGFKDSFDWIIKWIFDNSYY 1028



 Score = 36.1 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            ERLEFLGD +L  +++  LF+ +   +EG L+   + LV+ E  S++ +           
Sbjct: 1102 ERLEFLGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNNENLSKILKSNKNIFSPSQQ 1161

Query: 101  SDLRKDVCSFMTSIQADVVESLI 123
               +      M       +    
Sbjct: 1162 DSFKHFSVKRMGDHIESYIGGFY 1184


>gi|304307735|ref|NP_001182007.1| R2D2 protein [Bombyx mori]
 gi|300669731|dbj|BAJ11654.1| R2D2 [Bombyx mori]
          Length = 340

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              + +    K G  PEY+   +SGP H   F    +  G +       SKR A+Q AA 
Sbjct: 4   PITVLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGESV-SASARSKREAKQEAAR 62

Query: 218 EVL 220
            +L
Sbjct: 63  AML 65



 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           L+E          EY +   +GP H   F+V   I GL        +KR A Q AAA++
Sbjct: 113 LKELCEEYKLPGVEYALVADTGPAHMRLFSVRASI-GLHSRDASGTTKRQARQKAAADL 170


>gi|3021544|emb|CAA10952.1| OV20.0L [Orf virus]
          Length = 183

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                + E+  T   G DH PRFT  + ISG   A     SK+ A   A +  L
Sbjct: 119 MMTRRSLEFCETRSGGEDHCPRFTCTITISGKVVAAADGASKKLARHTACSSAL 172


>gi|242023479|ref|XP_002432161.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212517543|gb|EEB19423.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 652

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  VV I  +    G+  SK+ A+  AA   L+  
Sbjct: 409 YLAVVSIGNIQYGTGVGSSKKQAKHDAAKATLEIL 443


>gi|195049901|ref|XP_001992785.1| GH13466 [Drosophila grimshawi]
 gi|193899844|gb|EDV98710.1| GH13466 [Drosophila grimshawi]
          Length = 489

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    +    P Y+     G  H+  FT+   I       G   SK+ A+++A
Sbjct: 274 NPIGLLQEKCMQRRWPPPSYETETEVGLPHERLFTIACTILHYRE-VGKGKSKKIAKRLA 332

Query: 216 AAEVLKRE 223
           A ++  R 
Sbjct: 333 AHKMWTRL 340


>gi|47225151|emb|CAF98778.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 812

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F + V + G    +G   SK+ A+  AA   L+  
Sbjct: 287 RSFVMAVRVDGR-IFEGCGRSKKLAKNQAAQCALRAL 322



 Score = 36.4 bits (82), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +Y +  ++GP H P F++ VE++GL   +G   +
Sbjct: 116 QYHMVSQTGPVHAPVFSIAVEVNGLTF-EGTGPT 148


>gi|290462563|gb|ADD24329.1| Double-stranded RNA-specific editase 1 [Lepeophtheirus salmonis]
          Length = 296

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE-GI 225
            F + V + G+   +G   +K+ A++  A   LK+  GI
Sbjct: 252 IFVMSVTVDGVTF-EGEGKNKKDAKRNCALAALKKIYGI 289



 Score = 38.8 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           FT    + G    +    SK+ A+ + A   ++  
Sbjct: 91  FTAQCTVEGRDY-EASGPSKQMAKNLCAESAIQSL 124


>gi|195430156|ref|XP_002063122.1| GK21754 [Drosophila willistoni]
 gi|194159207|gb|EDW74108.1| GK21754 [Drosophila willistoni]
          Length = 1401

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219
              + +     T        +GP H  RF   V +   +  A G   +K+ AE+ A+ + 
Sbjct: 5   SFLFEYCSKNHTEPKFEVRPTGPKHRQRFLCEVRVEKCSYVAVGNSTNKKDAEKNASRDF 64

Query: 220 ---LKREG 224
              L R G
Sbjct: 65  VNYLVRMG 72



 Score = 34.9 bits (78), Expect = 8.5,   Method: Composition-based stats.
 Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 5/79 (6%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGM 204
                     + +   + +     +       GPDH   F   + I          A+  
Sbjct: 175 MHGNWTIENAKDRLNIYKQANNIRDDYKYTPVGPDHARSFMAELSIFVPALKRKVTARNT 234

Query: 205 DCSKRAAEQVAAAEVLKRE 223
             +K++A +  A  ++++ 
Sbjct: 235 GSNKKSASKSCALSLVRQL 253


>gi|332262731|ref|XP_003280412.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 1
           [Nomascus leucogenys]
          Length = 773

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576


>gi|301770469|ref|XP_002920627.1| PREDICTED: microprocessor complex subunit DGCR8-like [Ailuropoda
           melanoleuca]
          Length = 773

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576


>gi|297708300|ref|XP_002830907.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 1
           [Pongo abelii]
 gi|297708302|ref|XP_002830908.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 2
           [Pongo abelii]
          Length = 773

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576


>gi|302565592|ref|NP_001181679.1| microprocessor complex subunit DGCR8 [Macaca mulatta]
 gi|297260575|ref|XP_002798321.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 2
           [Macaca mulatta]
          Length = 773

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576


>gi|296191370|ref|XP_002806593.1| PREDICTED: LOW QUALITY PROTEIN: microprocessor complex subunit
           DGCR8-like [Callithrix jacchus]
          Length = 773

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576


>gi|291413067|ref|XP_002722795.1| PREDICTED: DiGeorge syndrome critical region gene 8 [Oryctolagus
           cuniculus]
          Length = 773

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576


>gi|281353794|gb|EFB29378.1| hypothetical protein PANDA_009401 [Ailuropoda melanoleuca]
          Length = 753

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576


>gi|332634877|ref|NP_001193848.1| DiGeorge syndrome critical region gene 8 [Sus scrofa]
          Length = 773

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576


>gi|242821621|ref|XP_002487717.1| dsRNA-specific ribonuclease III, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218712638|gb|EED12063.1| dsRNA-specific ribonuclease III, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 129

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 15/130 (11%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    LE+ I Y F +R+LL +AL        +Q   +RL  LGD+++ L++    +   
Sbjct: 1   MDCDGLERIIDYTFKDRNLLNEAL--------HQTQNKRLALLGDKVVALMLIDSWYQTG 52

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S    + +       S E  +  A +  L   +R     R+   S  T   A   E+++
Sbjct: 53  GSC--YDGNSLLQHAASNEAMANRAIQTHLKDMVR-----RQSHQSPSTHGLATDFEAVV 105

Query: 124 AALYLDGGIE 133
            A+++D G +
Sbjct: 106 GAVWIDCGKD 115


>gi|149758673|ref|XP_001488087.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8
           [Equus caballus]
          Length = 773

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576


>gi|149019784|gb|EDL77932.1| DiGeorge syndrome critical region gene 8 (predicted), isoform CRA_b
           [Rattus norvegicus]
          Length = 620

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576


>gi|148665097|gb|EDK97513.1| DiGeorge syndrome critical region gene 8, isoform CRA_b [Mus
           musculus]
          Length = 611

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576


>gi|148665098|gb|EDK97514.1| DiGeorge syndrome critical region gene 8, isoform CRA_c [Mus
           musculus]
          Length = 588

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 357 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 391


>gi|155372129|ref|NP_001094674.1| microprocessor complex subunit DGCR8 [Bos taurus]
 gi|259645217|sp|A6QR44|DGCR8_BOVIN RecName: Full=Microprocessor complex subunit DGCR8; AltName:
           Full=DiGeorge syndrome critical region 8 homolog
 gi|151554704|gb|AAI50110.1| DGCR8 protein [Bos taurus]
 gi|296478289|gb|DAA20404.1| DiGeorge syndrome critical region gene 8 [Bos taurus]
          Length = 760

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 529 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 563


>gi|119623404|gb|EAX02999.1| DiGeorge syndrome critical region gene 8, isoform CRA_b [Homo
           sapiens]
          Length = 490

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 259 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 293


>gi|114685159|ref|XP_001167112.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 1 [Pan
           troglodytes]
          Length = 700

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576


>gi|114685161|ref|XP_001167301.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 3 [Pan
           troglodytes]
          Length = 489

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 258 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 292


>gi|114685163|ref|XP_514988.2| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 8 [Pan
           troglodytes]
          Length = 416

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 185 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 219


>gi|114685157|ref|XP_001167234.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 2 [Pan
           troglodytes]
          Length = 783

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576


>gi|157786750|ref|NP_001099335.1| microprocessor complex subunit DGCR8 [Rattus norvegicus]
 gi|149019782|gb|EDL77930.1| DiGeorge syndrome critical region gene 8 (predicted), isoform CRA_a
           [Rattus norvegicus]
 gi|149019783|gb|EDL77931.1| DiGeorge syndrome critical region gene 8 (predicted), isoform CRA_a
           [Rattus norvegicus]
          Length = 773

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576


>gi|62897151|dbj|BAD96516.1| DiGeorge syndrome critical region gene 8 variant [Homo sapiens]
          Length = 570

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 339 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 373


>gi|159163522|pdb|1X47|A Chain A, Solution Structure Of Dsrm Domain In Dgcr8 Protein
          Length = 98

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 48  FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 82


>gi|39645186|gb|AAH09323.2| DGCR8 protein [Homo sapiens]
          Length = 517

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 286 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 320


>gi|73995913|ref|XP_543542.2| PREDICTED: similar to DiGeorge syndrome critical region gene 8
           [Canis familiaris]
          Length = 782

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 523 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 557


>gi|52546044|emb|CAE46205.2| hypothetical protein [Homo sapiens]
          Length = 492

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 261 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 295


>gi|38488720|ref|NP_073557.3| microprocessor complex subunit DGCR8 isoform 1 [Homo sapiens]
 gi|114685149|ref|XP_001167363.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 5 [Pan
           troglodytes]
 gi|114685151|ref|XP_001167389.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 6 [Pan
           troglodytes]
 gi|114685153|ref|XP_001167420.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 7 [Pan
           troglodytes]
 gi|23813990|sp|Q8WYQ5|DGCR8_HUMAN RecName: Full=Microprocessor complex subunit DGCR8; AltName:
           Full=DiGeorge syndrome critical region 8
 gi|18147097|dbj|BAB83032.1| DGCR8 protein [Homo sapiens]
 gi|47678243|emb|CAG30242.1| Em:AC006547.4 [Homo sapiens]
 gi|109451272|emb|CAK54497.1| DGCR8 [synthetic construct]
 gi|109451850|emb|CAK54796.1| DGCR8 [synthetic construct]
 gi|119623403|gb|EAX02998.1| DiGeorge syndrome critical region gene 8, isoform CRA_a [Homo
           sapiens]
 gi|168279077|dbj|BAG11418.1| DiGeorge syndrome critical region gene 8 [synthetic construct]
          Length = 773

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576


>gi|10438086|dbj|BAB15165.1| unnamed protein product [Homo sapiens]
          Length = 490

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 259 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 293


>gi|41152099|ref|NP_201581.2| microprocessor complex subunit DGCR8 [Mus musculus]
 gi|50403798|sp|Q9EQM6|DGCR8_MOUSE RecName: Full=Microprocessor complex subunit DGCR8; AltName:
           Full=DiGeorge syndrome critical region 8 homolog;
           AltName: Full=Gy1
 gi|38566065|gb|AAH62919.1| DiGeorge syndrome critical region gene 8 [Mus musculus]
 gi|40645099|dbj|BAD06468.1| Dgcr8 protein [Mus musculus]
 gi|42490933|gb|AAH66118.1| DiGeorge syndrome critical region gene 8 [Mus musculus]
 gi|117646832|emb|CAL37531.1| hypothetical protein [synthetic construct]
 gi|148665096|gb|EDK97512.1| DiGeorge syndrome critical region gene 8, isoform CRA_a [Mus
           musculus]
 gi|148665099|gb|EDK97515.1| DiGeorge syndrome critical region gene 8, isoform CRA_a [Mus
           musculus]
          Length = 773

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 542 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 576


>gi|156537077|ref|XP_001602214.1| PREDICTED: similar to tRNA-dihydrouridine synthase [Nasonia
           vitripennis]
          Length = 505

 Score = 49.9 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 48/190 (25%), Gaps = 8/190 (4%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            SY +L    D         +     +  +   L  RF    + E   +V    +     
Sbjct: 310 RSYLKLAVDYDNSPSNTKYCVQNILRELQESP-LGKRFLDTQTLEQICEVWGLDEYCRTK 368

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
           +     R     F    +   +             E     + +    R   +       
Sbjct: 369 QKEHRDRGFGGRFEVVPERLSLIDGNGGAGKRKLDEEEDVLLMRCAFLRNNYADDTSLPK 428

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAA 216
               +     +  +              D  F  VV++ G        + SK+ AEQ AA
Sbjct: 429 SRLAKWTRDNRKKLPIYVTHHE------DKLFRSVVQVDGRKYGSSFWEKSKKWAEQGAA 482

Query: 217 AEVLKREGIW 226
              L   G+ 
Sbjct: 483 LACLCALGVI 492


>gi|50511727|gb|AAT77416.1| dsRNA-binding protein LH1 [Brassica oleracea var. capitata]
          Length = 283

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221
           +    ++ +      T + GP H P F   V ++ +         +++AAEQ AA   L+
Sbjct: 21  QEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALQ 80

Query: 222 RE 223
             
Sbjct: 81  EL 82



 Score = 44.5 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 24/72 (33%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                 K  LQE+        P Y+          P+FT  VEI G+        +K+ A
Sbjct: 97  HEMGLCKNLLQEYTQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEA 156

Query: 212 EQVAAAEVLKRE 223
           E  A    L   
Sbjct: 157 EISAGRTALIAI 168


>gi|8346542|emb|CAB93934.1| BcpLH protein [Brassica rapa subsp. pekinensis]
 gi|50511731|gb|AAT77418.1| dsRNA-binding protein LH-c [Brassica napus]
          Length = 274

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221
           +    ++ +      T + GP H P F   V ++ +         +++AAEQ AA   L+
Sbjct: 21  QEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALQ 80

Query: 222 RE 223
             
Sbjct: 81  EL 82



 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 25/72 (34%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                 K  LQE+A       P Y+          P+FT  VEI G+        +K+ A
Sbjct: 97  HEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEA 156

Query: 212 EQVAAAEVLKRE 223
           E  A    L   
Sbjct: 157 EISAGRTALIAI 168


>gi|27262829|emb|CAD59423.1| dsRNA-binding protein [Brassica rapa subsp. rapa]
          Length = 275

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221
           +    ++ +      T + GP H P F   V ++ +         +++AAEQ AA   L+
Sbjct: 21  QEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALQ 80

Query: 222 RE 223
             
Sbjct: 81  EL 82



 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 25/72 (34%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                 K  LQE+A       P Y+          P+FT  VEI G+        +K+ A
Sbjct: 97  HEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEA 156

Query: 212 EQVAAAEVLKRE 223
           E  A    L   
Sbjct: 157 EISAGRTALIAI 168


>gi|50294528|ref|XP_449675.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528989|emb|CAG62651.1| unnamed protein product [Candida glabrata]
          Length = 358

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 3/110 (2%)

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
             ++ +L A+       + A  F+  +   ++  +       +   EL      +    P
Sbjct: 228 RSIIAALWASTQNTAKPDSAIHFIKDHILSRKLDVTKIFQFENPTRELAVLCRRENLDLP 287

Query: 174 EYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             K+   SG     P F V V        +G   S + A+  AA++ L +
Sbjct: 288 VSKLIAESGRLSKAPVFIVGVFSGEEKLGEGYGSSLKEAKARAASDALLK 337


>gi|241998518|ref|XP_002433902.1| staufen, putative [Ixodes scapularis]
 gi|215495661|gb|EEC05302.1| staufen, putative [Ixodes scapularis]
          Length = 651

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
             +          +  + L +   AK    P Y +    G      F +   + G    Q
Sbjct: 358 QIKCINAQNSQGVNPISRLIQIQQAKKEPEPSYSLVSERGDPRQREFVLQCVL-GALTTQ 416

Query: 203 GMDCSKRAAEQVAAAEVLKREG 224
           G   +K+ A+++AA  +L++ G
Sbjct: 417 GAGPNKKTAKRLAAEAMLQKLG 438



 Score = 36.4 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              L         V  +Y++   SGP H   FTVV+ ++G    Q    S +
Sbjct: 82  PMCLVNELARFNKVALQYRLVEESGPPHKKNFTVVLRLAGNEY-QASGTSIK 132


>gi|328871085|gb|EGG19456.1| hypothetical protein DFA_00033 [Dictyostelium fasciculatum]
          Length = 1106

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 17/121 (14%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----------------ESYERLEFLGD 48
           +    +K    +  N  LL +  TH S                         +RLEFLGD
Sbjct: 686 KMYEFQKSF-VSIKNDLLLRQVFTHPSTKMINSLVPQSYNIFRDYLPFDGDNQRLEFLGD 744

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
            +L    +  L+  +   +EG+L+ + + + S           ++   +R +        
Sbjct: 745 SVLKFCTTYYLYFKYPQLREGQLTSKRSEITSNSYLLSKCERWNVVDLLRFTVTEDMKKP 804

Query: 109 S 109
            
Sbjct: 805 K 805



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 10/132 (7%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           +        L ++++T         +SYERLEFLGD  L L+IS  L++ F   +EG LS
Sbjct: 866 LRINIKKTCLFQQSMT----CSGDLDSYERLEFLGDAFLDLVISKHLYDQFPDKQEGFLS 921

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV  E  +Q++++++L      S  +      F      D++E+ I  L LD G+
Sbjct: 922 TARAGLVKNEALAQISQKINL------SLAISDPHIHFTVKRLGDLLEAFIGCLLLDCGM 975

Query: 133 EVAGTFVDKYWK 144
           E    F+   + 
Sbjct: 976 EKTKYFIHTQFN 987



 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220
               + GV    +     GP++   FT  V     G     +G   +K+ AE+ +A  V+
Sbjct: 13  CQKHREGVPNYTECHQAPGPNNSNIFTSQVHCLFRGTDLSGEGKGKTKKDAEKASALSVI 72

Query: 221 KREGIW 226
            +  I 
Sbjct: 73  HQLFIL 78


>gi|6467479|gb|AAF13156.1| double stranded RNA activated protein kinase [Homo sapiens]
          Length = 551

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            SGP HD RFT  V I G    +G   SK+ 
Sbjct: 32  NSGPPHDRRFTFQVIIDGREFPEGEGRSKKE 62



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E   +   GP+    F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165


>gi|40788412|dbj|BAD07039.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 397

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
             +    V  R GPDH PRF   V  +G          + R AE  AA   L R 
Sbjct: 37  CFSLPSNVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAAEVALARL 91



 Score = 38.4 bits (87), Expect = 0.72,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
             T RSGP H P F+  VE++G++ A     +K+ AE+ 
Sbjct: 129 YTTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKE 167


>gi|226502082|ref|NP_001146877.1| RNA binding protein [Zea mays]
 gi|195604576|gb|ACG24118.1| RNA binding protein [Zea mays]
          Length = 179

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 6  YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE 38
           + L+ R+GYAF   +LL +A+THSS SH    
Sbjct: 37 LAALQSRVGYAFRAPALLRRAMTHSSYSHENGR 69


>gi|218189405|gb|EEC71832.1| hypothetical protein OsI_04490 [Oryza sativa Indica Group]
          Length = 745

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           + +F+V V  S      G+  ++  A+ +AA + L+  
Sbjct: 552 NMQFSVEVLFSNEKIGIGIGKTRDEAQVLAAEKALQNL 589



 Score = 43.8 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 20/58 (34%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
                      SG   +  +    E+ G    +G+  +K  A+  AA E LK     T
Sbjct: 665 QHVVFRDQVRDSGSALNGEYHFQAELGGQILGRGIGLNKDFAKLQAAEEALKTLKTTT 722


>gi|115441141|ref|NP_001044850.1| Os01g0857000 [Oryza sativa Japonica Group]
 gi|56784824|dbj|BAD82045.1| C-terminal domain phosphatase-like protein [Oryza sativa Japonica
           Group]
 gi|56785358|dbj|BAD82316.1| C-terminal domain phosphatase-like protein [Oryza sativa Japonica
           Group]
 gi|113534381|dbj|BAF06764.1| Os01g0857000 [Oryza sativa Japonica Group]
 gi|222619564|gb|EEE55696.1| hypothetical protein OsJ_04124 [Oryza sativa Japonica Group]
          Length = 756

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           + +F+V V  S      G+  ++  A+ +AA + L+  
Sbjct: 552 NMQFSVEVLFSNEKIGIGIGKTRDEAQVLAAEKALQNL 589



 Score = 40.3 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 21/58 (36%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
                      SG   +  +    E+ G    +G+D +K  A+  AA E LK     T
Sbjct: 665 QHVVFRDQVRDSGSALNGEYHFQAELGGQILGRGIDLNKDFAKLQAAEEALKTLKTTT 722


>gi|281363621|ref|NP_001163185.1| staufen, isoform C [Drosophila melanogaster]
 gi|33636635|gb|AAQ23615.1| LD13210p [Drosophila melanogaster]
 gi|272432536|gb|ACZ94457.1| staufen, isoform C [Drosophila melanogaster]
          Length = 1025

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         +T +Y++T   GP H   FTV + +             + A+ +AA+
Sbjct: 312 PMCLVNELARYNKITHQYRLTEERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAAS 370

Query: 218 EVLK 221
           + ++
Sbjct: 371 KAIE 374



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV--- 219
                K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++   
Sbjct: 584 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLVE 642

Query: 220 LKRE 223
           L++ 
Sbjct: 643 LQKL 646



 Score = 43.0 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSK 208
                +  T+L +    +    P +++  ++G +      F + V  SG   A+G   SK
Sbjct: 706 MDDADNPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASGST-ARGTGNSK 764

Query: 209 RAAEQVAAAEVLKRE 223
           + A++ AA  + +  
Sbjct: 765 KLAKRNAAQALFELL 779


>gi|24654775|ref|NP_725748.1| staufen, isoform B [Drosophila melanogaster]
 gi|7302673|gb|AAF57753.1| staufen, isoform B [Drosophila melanogaster]
 gi|27819870|gb|AAO24983.1| LP08764p [Drosophila melanogaster]
          Length = 914

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         +T +Y++T   GP H   FTV + +             + A+ +AA+
Sbjct: 200 PMCLVNELARYNKITHQYRLTEERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAAS 258

Query: 218 EVLK 221
           + ++
Sbjct: 259 KAIE 262



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV--- 219
                K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++   
Sbjct: 472 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLVE 530

Query: 220 LKRE 223
           L++ 
Sbjct: 531 LQKL 534



 Score = 43.0 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSK 208
                +  T+L +    +    P +++  ++G +      F + V  SG   A+G   SK
Sbjct: 594 MDDADNPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASGST-ARGTGNSK 652

Query: 209 RAAEQVAAAEVLKRE 223
           + A++ AA  + +  
Sbjct: 653 KLAKRNAAQALFELL 667


>gi|158506|gb|AAA73062.1| unnamed protein product [Drosophila melanogaster]
          Length = 1026

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         +T +Y++T   GP H   FTV + +             + A+ +AA+
Sbjct: 312 PMCLVNELARYNKITHQYRLTEERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAAS 370

Query: 218 EVLK 221
           + ++
Sbjct: 371 KAIE 374



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV--- 219
                K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++   
Sbjct: 584 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLVE 642

Query: 220 LKRE 223
           L++ 
Sbjct: 643 LQKL 646



 Score = 43.0 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSK 208
                +  T+L +    +    P +++  ++G +      F + V  SG   A+G   SK
Sbjct: 706 MDDADNPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASGST-ARGTGNSK 764

Query: 209 RAAEQVAAAEVLKRE 223
           + A++ AA  + +  
Sbjct: 765 KLAKRNAAQALFELL 779


>gi|17136520|ref|NP_476751.1| staufen, isoform A [Drosophila melanogaster]
 gi|71153175|sp|P25159|STAU_DROME RecName: Full=Maternal effect protein staufen
 gi|7302672|gb|AAF57752.1| staufen, isoform A [Drosophila melanogaster]
          Length = 1026

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         +T +Y++T   GP H   FTV + +             + A+ +AA+
Sbjct: 312 PMCLVNELARYNKITHQYRLTEERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAAS 370

Query: 218 EVLK 221
           + ++
Sbjct: 371 KAIE 374



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV--- 219
                K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++   
Sbjct: 584 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLVE 642

Query: 220 LKRE 223
           L++ 
Sbjct: 643 LQKL 646



 Score = 43.0 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSK 208
                +  T+L +    +    P +++  ++G +      F + V  SG   A+G   SK
Sbjct: 706 MDDADNPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASGST-ARGTGNSK 764

Query: 209 RAAEQVAAAEVLKRE 223
           + A++ AA  + +  
Sbjct: 765 KLAKRNAAQALFELL 779


>gi|313237061|emb|CBY25144.1| unnamed protein product [Oikopleura dioica]
          Length = 1307

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
               + L +   A     P Y+V           F +   ++    +QG+  +K+ A+++A
Sbjct: 1115 HPVSRLAQIQQAAKEREPIYQVISEKSVQRKKEFIMQCIVNDKV-SQGIGPNKKTAKKIA 1173

Query: 216  AAEVLKREG 224
            A  +L   G
Sbjct: 1174 AEAMLVIMG 1182



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 13/63 (20%)

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR-------------AAEQVAAAEV 219
           P+Y +T   GP H   FTV +E+      +G   S +              A+  AA + 
Sbjct: 796 PKYTLTGEEGPPHHKTFTVTLELGPGEKYEGSGTSIKKVNHLFCSKNNLFKAQHSAAKKA 855

Query: 220 LKR 222
           ++ 
Sbjct: 856 IEN 858



 Score = 44.1 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 4/75 (5%)

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                   R       +  + +       K      P     F V + + G         
Sbjct: 896 MAHYKMVDRKPIFHNNQSFNPQIYPNANPKRINTRPP---KLFVVELTV-GEKVFHAEGR 951

Query: 207 SKRAAEQVAAAEVLK 221
           +++ A+  AA + L+
Sbjct: 952 TRQQAKHSAATQALE 966



 Score = 43.8 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 70/246 (28%), Gaps = 35/246 (14%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLE-----------FLGDRILGLLISTLL 59
            K++ + F +++ L KA  H S +    E+ + LE              D +   +    L
Sbjct: 832  KKVNHLFCSKNNLFKA-QH-SAAKKAIENCQTLERPKYKPKRPKQINYDALTPTVKLNGL 889

Query: 60   FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----------DLRKDVCS 109
                      ++  R     + ++ +           I                +     
Sbjct: 890  AMKRGEMAHYKMVDRKPIFHNNQSFNPQIYPNANPKRINTRPPKLFVVELTVGEKVFHAE 949

Query: 110  FMTSIQADVVESLIAA-LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
              T  QA    +  A   Y             +  +          + ++  L      K
Sbjct: 950  GRTRQQAKHSAATQALEYYERNPAPEKVPKPAQSGQPIPPGEQSQPKKSEVSLVYELALK 1009

Query: 169  FGVTPEYKVTFRSGPDHDPRFTVVVEISG-----------LAPAQGMDCSKRAAEQVAAA 217
              +T +++     GP H   +++ + +                A+G   SK+ A + AA 
Sbjct: 1010 RNLTVQFEKISEEGPPHLKHYSIRLHVGNPEEQEDNEQITYFTAEGQAQSKKLARRKAAI 1069

Query: 218  EVLKRE 223
             VL   
Sbjct: 1070 TVLDEM 1075


>gi|313212829|emb|CBY36745.1| unnamed protein product [Oikopleura dioica]
          Length = 596

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
              + L +   A     P Y+V           F +   ++    +QG+  +K+ A+++A
Sbjct: 404 HPVSRLAQIQQAAKEREPIYQVISEKSVQRKKEFIMQCIVNDKV-SQGIGPNKKTAKKIA 462

Query: 216 AAEVLKREG 224
           A  +L   G
Sbjct: 463 AEAMLVIMG 471



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 13/78 (16%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR-------- 209
                        + P+Y +T   GP H   FTV +E+      +G   S +        
Sbjct: 70  PMCQVNEIAKFNKLAPKYTLTGEEGPPHHKTFTVTLELGPGEKYEGSGTSIKKVNHLFCS 129

Query: 210 -----AAEQVAAAEVLKR 222
                 A+  AA + ++ 
Sbjct: 130 KNNLFKAQHSAAKKAIEN 147



 Score = 44.1 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 4/75 (5%)

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                   R       +  + +       K      P     F V + + G         
Sbjct: 185 MAHYKMVDRKPIFHNNQSFNPQIYPNANPKRINTRPP---KLFVVELTV-GEKVFHAEGR 240

Query: 207 SKRAAEQVAAAEVLK 221
           +++ A+  AA + L+
Sbjct: 241 TRQQAKHSAATQALE 255



 Score = 43.8 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 70/246 (28%), Gaps = 35/246 (14%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLE-----------FLGDRILGLLISTLL 59
           K++ + F +++ L KA  H S +    E+ + LE              D +   +    L
Sbjct: 121 KKVNHLFCSKNNLFKA-QH-SAAKKAIENCQTLERPKYKPKRPKQINYDALTPTVKLNGL 178

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----------DLRKDVCS 109
                     ++  R     + ++ +           I                +     
Sbjct: 179 AMKRGEMAHYKMVDRKPIFHNNQSFNPQIYPNANPKRINTRPPKLFVVELTVGEKVFHAE 238

Query: 110 FMTSIQADVVESLIAA-LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
             T  QA    +  A   Y             +  +          + ++  L      K
Sbjct: 239 GRTRQQAKHSAATQALEYYERNPAPEKVPKPAQSGQPIPPGEQSQPKKSEVSLVYELALK 298

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISG-----------LAPAQGMDCSKRAAEQVAAA 217
             +T +++     GP H   +++ + +                A+G   SK+ A + AA 
Sbjct: 299 RNLTVQFEKISEEGPPHLKHYSIRLHVGNPEEQEDNEQITYFTAEGQAQSKKLARRKAAI 358

Query: 218 EVLKRE 223
            VL   
Sbjct: 359 TVLDEM 364


>gi|29126353|gb|AAO66545.1| hypothetical protein Os03g63740 [Oryza sativa Japonica Group]
 gi|108712167|gb|ABF99962.1| expressed protein [Oryza sativa Japonica Group]
          Length = 213

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 3/135 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +TL+ +I Y F    LL +A+TH+S S     +   L  LG        +         
Sbjct: 34  LATLQNQIAYRFHAPDLLRRAMTHASYSRENGRA---LAVLGLAASQSAAALRALAADHD 90

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A    +S R         C   A  + + S +RV++  +      +      ++ ++   
Sbjct: 91  ASASAVSRRARDASGEAACVAAAARVGIPSIVRVAAGTKPTAPPVVCGALRALIGAVAVD 150

Query: 126 LYLDGGIEVAGTFVD 140
                  E     + 
Sbjct: 151 ANSTHAAEEVFWKLH 165


>gi|166796315|gb|AAI59182.1| dgcr8 protein [Xenopus (Silurana) tropicalis]
          Length = 550

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 319 FGASVIIDGVTYGTGTASSKKLAKNKAARATLEIL 353


>gi|163860194|gb|ABY41265.1| interferon-resistance protein [Orf virus]
 gi|197344481|gb|ACH69627.1| interferon-resistance protein [Orf virus]
          Length = 183

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                + E+  T   G DH P FT  + ISG   A     SK+ A   A A  L
Sbjct: 119 MMTHRSLEFCETRSGGKDHCPLFTCTITISGKVVAAADGASKKLARHTACASAL 172


>gi|37594904|gb|AAQ94311.1| interferon resistance protein [Orf virus]
          Length = 183

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 22/54 (40%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH PRFT  + ISG   A     SKR A   A +  L
Sbjct: 119 MMTHRPLEFCETRSGGEDHCPRFTCTITISGKVVAAADGASKRLARHTACSSAL 172


>gi|153792023|ref|NP_001093309.1| MLE protein [Bombyx mori]
 gi|147883246|gb|ABQ51917.1| MLE protein [Bombyx mori]
          Length = 1308

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                +GP H  RF   V + G +    G   +K+ A+  AA +
Sbjct: 20  FDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAKD 63


>gi|326915415|ref|XP_003204013.1| PREDICTED: interferon-induced, double-stranded RNA-activated
           protein kinase-like [Meleagris gallopavo]
          Length = 545

 Score = 49.5 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 13/33 (39%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           Y      GP HDP FTV V I       G   S
Sbjct: 22  YIDVDMRGPSHDPEFTVTVRIDNKEYGTGTGKS 54



 Score = 36.8 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 17/50 (34%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              L      +     +Y    R+G  H P ++    ISG     G+  S
Sbjct: 100 YVSLLNKYSQRTLQLVDYNNINRTGDAHAPMYSCSCTISGHVYGNGIGNS 149


>gi|224067130|ref|XP_002302370.1| predicted protein [Populus trichocarpa]
 gi|222844096|gb|EEE81643.1| predicted protein [Populus trichocarpa]
          Length = 355

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 23/60 (38%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE+A       P Y+      P     F   VEI G+        +K+ AE  AA   L
Sbjct: 106 LQEYAQKMNYAIPLYECQKDETPGRGLVFKCTVEIGGIRYIGASTKTKKEAEIKAARTAL 165



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKRE 223
             T + GP H+P F   V +  +         +++AAEQ AA   L   
Sbjct: 34  YETIKEGPSHEPSFRSTVIVKDVRYDSLPGFFNRKAAEQSAAEVALVEL 82


>gi|330802362|ref|XP_003289187.1| hypothetical protein DICPUDRAFT_79950 [Dictyostelium purpureum]
 gi|325080763|gb|EGC34305.1| hypothetical protein DICPUDRAFT_79950 [Dictyostelium purpureum]
          Length = 1059

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              TL   +     + SLLE+A      S     +Y+RLEF+GD +L  + +  L+  F 
Sbjct: 908 DLRTLLFNLDLRIDHPSLLEEAF-----SSGTNVNYQRLEFVGDGVLDYITADYLYKEFP 962

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLAS 95
              EG L+   + LV     S  ++ L L  
Sbjct: 963 EYNEGTLTEFRSRLVRNNNLSDASKRLKLPP 993



 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 24/180 (13%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFL 46
           +R +    RI  +  +  +L +A TH S   S +                    +RLE+L
Sbjct: 736 VRLAQFNTRI-VSLKSYKILREAFTHPSTKASNRLIPPSELPMFKDYYPYLGDNQRLEYL 794

Query: 47  GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
           GD +L L  S  LF  +  +KEG LS+   + +  +   +V++ + L   +R+S+     
Sbjct: 795 GDSVLKLASSIYLFYKYSGSKEGALSMERANNIKNDNLIEVSKRMHLDEILRLSNSDEIK 854

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
                    ADV+E+L  A+ LD G E A   + +Y    +       + +  E      
Sbjct: 855 ------KPHADVIEALFGAISLDRGFEKAYEIIVRYVFNDSNVRLPLYQSSMEETVLSHD 908



 Score = 44.5 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 20/52 (38%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 +   G +H+  F  +V ++          +K+ AE+  A  +L+  
Sbjct: 18  PNIVYTSESRGSEHNKDFKTIVIVNNRRIESEWRKNKKDAEKDCATHILEYL 69


>gi|301170840|dbj|BAJ12034.1| virus interferon resistance [Orf virus]
          Length = 183

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH PRFT  + ISG   A     SK+ A   A +  L
Sbjct: 119 MMTHRPLEFSETRAGGEDHCPRFTCTITISGKVVAAADGASKKLARHTACSSAL 172


>gi|158298855|ref|XP_001238071.2| AGAP009887-PA [Anopheles gambiae str. PEST]
 gi|157014087|gb|EAU76055.2| AGAP009887-PA [Anopheles gambiae str. PEST]
          Length = 324

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
            ++++    +    PE       GP H P F     I  +   +G   +K+ A+Q+A  E
Sbjct: 113 NQVRDICIQRNFPLPEIVQVRSYGPSHAPVFEFECRIREIVR-RGSHSTKKGAKQIACQE 171

Query: 219 VLKRE 223
           ++K  
Sbjct: 172 MIKTL 176


>gi|115613122|ref|XP_001177698.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115975098|ref|XP_001191759.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 321

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 65/223 (29%), Gaps = 20/223 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLG-DRILGLLISTLLFNHFD 64
                +R G  F N   +  A TH S     ++S   +  L  D  L L  +T L N   
Sbjct: 77  IYAFCQRFGEEF-NGETVRTAFTHKSYVEKEEKSRREMGLLDQDAKLQLDDNTQLVNAGY 135

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                 ++  +      +   +  R ++  ++       + +  +     +A +      
Sbjct: 136 QFSSDYIAG-YLRHALPKVPEEGYRRMEKKNYKYTKIHTKMNKDNVKGMDRAGLFVRDFI 194

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
                                + L       +  + L +    +    PE ++   +G +
Sbjct: 195 I---------------PQLMDKDLCDVWLIDNPMSLLVQVLADQQREEPEARLLREAGKN 239

Query: 185 -HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR-EGI 225
              P F V +             S   AE  AA   L+   GI
Sbjct: 240 TFTPLFMVGIYSDKKLLGWAPGESVTIAEDEAARVALRNLLGI 282


>gi|163860196|gb|ABY41266.1| interferon-resistance protein [Orf virus]
          Length = 183

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                + E+  T   G DH P FT  + ISG   A     SK+ A   A A  L
Sbjct: 119 MMTHRSLEFCETRSGGKDHCPLFTCTITISGKVVAAADGASKKLARHTACASAL 172


>gi|41057083|ref|NP_957797.1| ORF020 dsRNA-binding PKR inhibitor [Orf virus]
 gi|41018640|gb|AAR98245.1| ORF020 dsRNA-binding PKR inhibitor [Orf virus]
          Length = 183

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                + E+  T   G DH P FT  + ISG   A     SK+ A   A A  L
Sbjct: 119 MMTHRSLEFCETRSGGKDHCPLFTCTITISGKVVAAADGASKKLARHTACASAL 172


>gi|12085017|ref|NP_073419.1| 34L protein [Yaba-like disease virus]
 gi|12056193|emb|CAC21272.1| 34L protein [Yaba-like disease virus]
          Length = 185

 Score = 49.5 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 29/103 (28%)

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
                       +     +        +      K     +D    +    + +F     
Sbjct: 69  WFKNYNCDNGEKHDSKLEQKNHIPNHIFSDTVPYKKIINWKDKNPCIVLNEYCQFTCRDW 128

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
                 SG  H P FT  V ISG+     +  +KR A+  A+ 
Sbjct: 129 SIDITTSGKSHCPMFTATVIISGIKFKPAIGNTKREAKYNASK 171


>gi|115955350|ref|XP_001193629.1| PREDICTED: similar to Staufen, RNA binding protein, homolog 2
           (Drosophila), partial [Strongylocentrotus purpuratus]
          Length = 486

 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               G  H   F +   + G    +    SK+ A++ AA  +L +  
Sbjct: 290 LDERGQPHLKIFKLQCTV-GEFNTESEGPSKKDAKRKAAELMLPKLK 335


>gi|115714507|ref|XP_001196524.1| PREDICTED: similar to Staufen, RNA binding protein, homolog 2
           (Drosophila), partial [Strongylocentrotus purpuratus]
          Length = 396

 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               G  H   F +   + G    +    SK+ A++ AA  +L +  
Sbjct: 290 LDERGQPHLKIFKLQCTV-GEFNTESEGPSKKDAKRKAAELMLPKLK 335


>gi|302664704|ref|XP_003023979.1| nucleolar RNAse III, putative [Trichophyton verrucosum HKI 0517]
 gi|291188003|gb|EFE43361.1| nucleolar RNAse III, putative [Trichophyton verrucosum HKI 0517]
          Length = 452

 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 78/225 (34%), Gaps = 29/225 (12%)

Query: 23  LEKA-LTH-------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           L+ A  TH          + + +++Y+RLE LGD  + L+ + L++ +F +   G+++  
Sbjct: 191 LKTAVFTHTGIMERGPVSTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKIAQA 250

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             ++V  ET ++ A        ++ SSD++       T +  DV E+ +AA  +      
Sbjct: 251 RETMVKNETLAEYAIAYGFDRLLKTSSDIKNV-PKRWTKVMGDVFEAYVAAAIIADPKGG 309

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-----DHDPR- 188
                    +    K  + +    +                      G      +  PR 
Sbjct: 310 LQAVESWLTQLWLPKLAEVKVPLASVTLAQGSKASFKDKLAATVMSRGIKLQYLEEKPRQ 369

Query: 189 --------FTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220
                   F +   ++G          G   SK  A   AA   L
Sbjct: 370 REGGLVTSF-IGAYLTGWGYEKKLLGSGSGLSKSEAGNEAALNAL 413


>gi|195121068|ref|XP_002005043.1| GI19273 [Drosophila mojavensis]
 gi|193910111|gb|EDW08978.1| GI19273 [Drosophila mojavensis]
          Length = 1100

 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                +  +T  +KV    GP H   F     + G   ++G    K+ +++ AA ++L  
Sbjct: 632 HEIGIRRNMTVHFKVLREEGPAHMKNFITACIV-GSIVSEGEGNGKKISKKRAAEKMLAE 690

Query: 223 E 223
            
Sbjct: 691 L 691



 Score = 48.0 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         +T +Y++T   GP H   FTV +++             + A+ +AA+
Sbjct: 355 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAAS 413

Query: 218 EVLK 221
           + ++
Sbjct: 414 KAIE 417



 Score = 42.6 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLA 199
           + K+++        +  T+L +    +    P +++  ++G +      F + V  SG  
Sbjct: 747 HQKEKSTADQDDAENPITKLIQLQQTRKEKEPIFELIAKNGNESCRRREFVMEVSASGRT 806

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
            A+G   SK+ A++ +A  +L+  
Sbjct: 807 -ARGTGNSKKQAKRNSAQALLELL 829


>gi|327276491|ref|XP_003223003.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Anolis
           carolinensis]
          Length = 488

 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 43/177 (24%), Gaps = 1/177 (0%)

Query: 50  ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
            L   +      +         + ++          + A+   L +   +          
Sbjct: 258 CLLKDVMQKYIKYAVRYDNHYTNTKYCLCQMLREQLENAQGKKLHAAQSIQEICEVFEMG 317

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
                   ++E   A+L      E          K       +      T          
Sbjct: 318 SFYEETTAILEGKKASLEAKDQDENDQIEDTDVVKMAVRFDKREYPPQITPKMHLLEWCR 377

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225
                  V        D  F  VV ++    +    + SK+ AEQ AA   L+  G+
Sbjct: 378 KGKLPQPVYETIERPRDRLFCSVVTVAEQKYSSTLWEKSKKLAEQAAAIACLRALGL 434


>gi|170574540|ref|XP_001892859.1| Double-stranded RNA binding motif family protein [Brugia malayi]
 gi|158601386|gb|EDP38310.1| Double-stranded RNA binding motif family protein [Brugia malayi]
          Length = 369

 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
                 GP +   F     + G         +K+ A+ +AA ++  +   W
Sbjct: 134 YEIDEEGPTNQRIFIATCTV-GKIHVVAHGKTKKIAKTLAAQKMCTQLENW 183



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F    E+ G+    G   +K+ A+Q+AA ++LK+ 
Sbjct: 68  FATRCELYGI-YTMGYGRTKKIAKQMAAKDMLKKM 101


>gi|322797373|gb|EFZ19485.1| hypothetical protein SINV_11443 [Solenopsis invicta]
          Length = 345

 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 37/147 (25%), Gaps = 13/147 (8%)

Query: 90  ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149
            ++  ++      L                   +                +      +  
Sbjct: 32  HVNTFTYRVSCDGLNATGTGRCKKDAKHEAAKAMLTEIAKHRNYPQLPAANTPTVSPSRS 91

Query: 150 SGKFRRDAKT------------ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
                                 ELQE         PEY +    GP H   FT+  +IS 
Sbjct: 92  PFHSAPLPPRLPSNVPFFNAVGELQELCAINNLQEPEYLLIKDIGPPHARIFTLRCKISN 151

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKREG 224
                G   +K+ A+  AA +++ R  
Sbjct: 152 FEE-DGTATTKKQAKHDAAKKMVDRIK 177



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
                  + +    K G+ P+Y +    G  H   FT  V   GL  A G    K+ A+ 
Sbjct: 1   MSKTPVSILQEMMVKQGMIPDYDLIHDGGGRHVNTFTYRVSCDGLN-ATGTGRCKKDAKH 59

Query: 214 VAAAEVL 220
            AA  +L
Sbjct: 60  EAAKAML 66


>gi|146260811|gb|ABQ14708.1| adenosine deaminase [Bombyx mori]
          Length = 570

 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            H  RF VV +I      +G   SK+ A+  AA   L
Sbjct: 162 AHSMRFKVVCQIKEQKF-EGYGSSKKLAKLAAARSAL 197



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            H P FTV V ++ +   +G   SKR A   AA   L   
Sbjct: 13  AHCPSFTVAVNVADMTF-EGWGHSKREARASAARVCLAAL 51


>gi|323307668|gb|EGA60933.1| Rnt1p [Saccharomyces cerevisiae FostersO]
          Length = 253

 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 12/138 (8%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              + ++  +   H S                  ERLEFLGD IL  +++ +++N F   
Sbjct: 61  EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 120

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQADVVESLI 123
            EG+LS    +LVS E   Q +   +    ++ + DL+ +  +F      + ADV E+ I
Sbjct: 121 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 180

Query: 124 AALYLDGGIEVAGTFVDK 141
             L  D            
Sbjct: 181 GGLMEDDPRNNLPKIRKW 198


>gi|115313587|gb|AAI24420.1| Dgcr8 protein [Danio rerio]
          Length = 578

 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G+  SK+ A+  AA   L+  
Sbjct: 347 FGASVIIDGVTYGTGIASSKKLAKNKAARATLEIL 381


>gi|302506394|ref|XP_003015154.1| nucleolar RNAse III, putative [Arthroderma benhamiae CBS 112371]
 gi|291178725|gb|EFE34514.1| nucleolar RNAse III, putative [Arthroderma benhamiae CBS 112371]
          Length = 399

 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 78/225 (34%), Gaps = 29/225 (12%)

Query: 23  LEKA-LTH-------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           L+ A  TH          + + +++Y+RLE LGD  + L+ + L++ +F +   G+++  
Sbjct: 138 LKTAVFTHTGIMERGPVSTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKIAQA 197

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             ++V  ET ++ A        ++ SSD++       T +  DV E+ +AA  +      
Sbjct: 198 RETMVKNETLAEYAIAYGFDRLLKTSSDIKSVS-KRWTKVMGDVFEAYVAAAIIADPKGG 256

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-----DHDPR- 188
                    +    K  + +    +                      G      +  PR 
Sbjct: 257 LQAVESWLTQLWLPKLAEVKVPLASVTLAQGSKASFKDKLAATVMSRGIKLQYLEEKPRQ 316

Query: 189 --------FTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220
                   F +   ++G          G   SK  A   AA   L
Sbjct: 317 REGGLVTSF-IGAYLTGWGYEKKLLGSGSGLSKSEAGNEAALNAL 360


>gi|118365014|ref|XP_001015728.1| Double-stranded RNA binding motif family protein [Tetrahymena
           thermophila]
 gi|89297495|gb|EAR95483.1| Double-stranded RNA binding motif family protein [Tetrahymena
           thermophila SB210]
          Length = 755

 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/112 (10%), Positives = 31/112 (27%)

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
             +   ++  +     +          ++    + L         +  L  +        
Sbjct: 172 KRKQQEIQECLIDQNKNDDQSPQKQDKNENNFVQNLMDDIQLYFPQKPLSVFLREYCSKM 231

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                      +    F+  + I G    +G+  SK+ A + A+   L + G
Sbjct: 232 KRAMDIICDENEKGLGFSSYLIIDGKHYPKGIGKSKKDAREEASMNALAKMG 283


>gi|281201329|gb|EFA75541.1| hypothetical protein PPL_11046 [Polysphondylium pallidum PN500]
          Length = 1128

 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           GP H P F   + ++          SK+ A+   + + L
Sbjct: 704 GPQHQPEFICGLYLNNELKETCKGRSKKDAKDKVSRQAL 742


>gi|47228159|emb|CAF97788.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 189

 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           Y VT RSGP H P F V V+++G+   +G   + + A+  AA   L+
Sbjct: 25  YHVTSRSGPLHAPLFAVGVDVNGVRF-EGRGPTVKRAKLRAAELALR 70


>gi|325181016|emb|CCA15426.1| AlNc14C11G1368 [Albugo laibachii Nc14]
          Length = 841

 Score = 49.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 72/211 (34%), Gaps = 14/211 (6%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALT  + +         +  LGD ++ ++++  L + F  +K+  L    + + S E  
Sbjct: 628 QALTRPTEALESL----WIMHLGDAMINMVVAAFLIHTFPCSKDELLLHVQSHVTSNEQR 683

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              AR+  +A  + +  D  ++     +   A V  + +  L+L+    V          
Sbjct: 684 ILAARKAGIAHLLPLLCDEYEEEQINGSDKLARVFNTTLGFLFLENDGNVPFMTQILKHI 743

Query: 145 QRA----------LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
                         +             +  + K       ++   S       FTV + 
Sbjct: 744 MFPDILAVIDRREWQRSTQSFGHYLLSWDKQNHKRTRCTFKRLRDSSADSKHGHFTVALY 803

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           ++    A+G   S   A+  A  + L+  G+
Sbjct: 804 VNDHMVARGRGISMSTAQDAACMKALRMFGL 834


>gi|156364733|ref|XP_001626500.1| predicted protein [Nematostella vectensis]
 gi|156213378|gb|EDO34400.1| predicted protein [Nematostella vectensis]
          Length = 237

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 186 DPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223
           D  FT  V + G+  + +    +K+ A+  AA + ++  
Sbjct: 85  DKIFTCDVTVDGVLSSCRAYGPTKKEAKGNAARKAIEEL 123


>gi|332227208|ref|XP_003262783.1| PREDICTED: interferon-induced, double-stranded RNA-activated
           protein kinase [Nomascus leucogenys]
          Length = 510

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SG      F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 123 SGVHGPKGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYVQI 165



 Score = 38.4 bits (87), Expect = 0.85,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 12/28 (42%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I      +    S
Sbjct: 32  NSGPPHDRRFTFRVIIDEREFPEAEGRS 59


>gi|242059289|ref|XP_002458790.1| hypothetical protein SORBIDRAFT_03g040355 [Sorghum bicolor]
 gi|241930765|gb|EES03910.1| hypothetical protein SORBIDRAFT_03g040355 [Sorghum bicolor]
          Length = 718

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F+V V  S      G+  ++  A+  AA + L+  
Sbjct: 537 FSVEVLFSNEKIGIGIGKTRDEAQVQAAEKALQNL 571


>gi|254582945|ref|XP_002499204.1| ZYRO0E06490p [Zygosaccharomyces rouxii]
 gi|238942778|emb|CAR30949.1| ZYRO0E06490p [Zygosaccharomyces rouxii]
          Length = 380

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 26/102 (25%), Gaps = 1/102 (0%)

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
                  +              ++  +           EL      +    P  ++   S
Sbjct: 258 WACTQETNPQYAFQFIDDHILSRKLDISKMFQFEQPTRELAALCRREGLQKPVSRLLAES 317

Query: 182 GPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           G     P F V V        +G   S +  +  AA + L +
Sbjct: 318 GRHSKAPVFIVGVFSGDEKLGEGFGSSLKEGKARAATDALMK 359


>gi|255578155|ref|XP_002529947.1| double-stranded RNA binding protein, putative [Ricinus communis]
 gi|223530577|gb|EEF32455.1| double-stranded RNA binding protein, putative [Ricinus communis]
          Length = 464

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L +    + G       TFRSG  H P FT  VE++G+        +K+ AE+ AA 
Sbjct: 88  YKNLLQEIAQRVGAPLPQYTTFRSGLGHQPVFTGTVELAGITFTGEPAKNKKQAEKNAAM 147

Query: 218 EV---LKRE 223
                LK+ 
Sbjct: 148 AAWSSLKQL 156



 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
                     R GPDH PRF   V  +G          + R AE  AA   L   
Sbjct: 14  CFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPHYCSTLRQAEHSAAEVALTSL 68


>gi|208690905|gb|ACI31228.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Hylobates alibarbis]
          Length = 551

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 15/43 (34%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            G      F    ++     +     +K+ A+Q+AA     + 
Sbjct: 123 WGMHGTKGFHYKCKMGQKEYSIATGSTKQEAKQLAAKLAYVQI 165



 Score = 38.4 bits (87), Expect = 0.85,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 12/28 (42%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I      +    S
Sbjct: 32  NSGPPHDRRFTFRVIIDEREFPEAEGRS 59


>gi|208690879|gb|ACI31215.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Nomascus
           leucogenys]
          Length = 551

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SG      F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 123 SGVHGPKGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYVQI 165



 Score = 38.4 bits (87), Expect = 0.85,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 12/28 (42%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I      +    S
Sbjct: 32  NSGPPHDRRFTFRVIIDEREFPEAEGRS 59


>gi|301608716|ref|XP_002933927.1| PREDICTED: eukaryotic translation initiation factor 2-alpha kinase
           3 [Xenopus (Silurana) tropicalis]
          Length = 384

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKREG 224
            RFTV + I      +G   S++AA++ AA      L+  G
Sbjct: 3   KRFTVHLYIENEIFGEGQGRSRKAADKEAARTGLAALQNRG 43


>gi|313243436|emb|CBY42194.1| unnamed protein product [Oikopleura dioica]
          Length = 723

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 22/73 (30%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
              +      T L   A          +   ++  D    +   V       A G   +K
Sbjct: 463 FMMEGMDCPLTILSRTASLNKMQIFWEESEKKNKTDGGGTWEATVSFDKTKIADGHGKTK 522

Query: 209 RAAEQVAAAEVLK 221
           + A+  AA+  L+
Sbjct: 523 KDAKADAASNALR 535


>gi|313231812|emb|CBY08924.1| unnamed protein product [Oikopleura dioica]
          Length = 672

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 22/73 (30%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
              +      T L   A          +   ++  D    +   V       A G   +K
Sbjct: 412 FMMEGMDCPLTILSRTASLNKMQIFWEESEKKNKTDGGGTWEATVSFDKTKIADGHGKTK 471

Query: 209 RAAEQVAAAEVLK 221
           + A+  AA+  L+
Sbjct: 472 KDAKADAASNALR 484


>gi|255569490|ref|XP_002525712.1| double-stranded RNA binding protein, putative [Ricinus communis]
 gi|223535012|gb|EEF36695.1| double-stranded RNA binding protein, putative [Ricinus communis]
          Length = 280

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 16/43 (37%)

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           G  H P F   VE+ G         +K+ AE  AA    K   
Sbjct: 31  GESHKPTFASTVEVKGEFFTGQQTRTKKQAEFNAAKVAYKALK 73


>gi|207111610|ref|ZP_03245772.1| ribonuclease III [Helicobacter pylori HPKX_438_CA4C1]
          Length = 43

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 16/39 (41%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
               GPDH   F + + I     A     SK+ AEQ  A
Sbjct: 3   LKEKGPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 41


>gi|297822435|ref|XP_002879100.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
 gi|297324939|gb|EFH55359.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
          Length = 436

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L +    + G       TFRSG  H P FT  VE++G+        +K+ AE+ AA 
Sbjct: 88  YKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFTGTVELAGITFTGDPAKNKKQAEKNAAM 147

Query: 218 EV---LKRE 223
                LK+ 
Sbjct: 148 AAWSSLKQL 156



 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223
                     R GPDH PRF   V  +G          + R AE  AA   L   
Sbjct: 14  CFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAAEVALNAL 68


>gi|18401724|ref|NP_565672.1| DRB2 (DSRNA-BINDING PROTEIN 2); double-stranded RNA binding
           [Arabidopsis thaliana]
 gi|75266001|sp|Q9SKN2|DRB2_ARATH RecName: Full=Double-stranded RNA-binding protein 2; AltName:
           Full=dsRNA-binding protein 2; Short=AtDRB2
 gi|4432839|gb|AAD20688.1| expressed protein [Arabidopsis thaliana]
 gi|14334606|gb|AAK59481.1| unknown protein [Arabidopsis thaliana]
 gi|17065634|gb|AAL33811.1| unknown protein [Arabidopsis thaliana]
 gi|330253020|gb|AEC08114.1| dsRNA-binding protein 2 [Arabidopsis thaliana]
          Length = 434

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L +    + G       TFRSG  H P FT  VE++G+        +K+ AE+ AA 
Sbjct: 88  YKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFTGTVELAGITFTGDPAKNKKQAEKNAAM 147

Query: 218 EV---LKRE 223
                LK+ 
Sbjct: 148 AAWSSLKQL 156



 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223
                     R GPDH PRF   V  +G          + R AE  AA   L   
Sbjct: 14  CFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAAEVALNAL 68


>gi|194864148|ref|XP_001970794.1| GG10841 [Drosophila erecta]
 gi|190662661|gb|EDV59853.1| GG10841 [Drosophila erecta]
          Length = 1304

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +   +    G   +K+ AE+ A  +
Sbjct: 5   SFLYEFCAKSRIEPKFDIRQTGPKNRQRFLCEVRVDPNIYIGVGNSTNKKDAEKNACRD 63


>gi|294881176|ref|XP_002769282.1| hypothetical protein Pmar_PMAR007696 [Perkinsus marinus ATCC 50983]
 gi|239872560|gb|EER02000.1| hypothetical protein Pmar_PMAR007696 [Perkinsus marinus ATCC 50983]
          Length = 1394

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 14   GYAF-ANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLF 60
            GY F  +  LL ++LTH+S++  S   S ERLE++GD +LG ++   LF
Sbjct: 1136 GYVFEKHPWLLTESLTHASVTSVSASYSNERLEWIGDAVLGAVVLQWLF 1184


>gi|194764929|ref|XP_001964580.1| GF22976 [Drosophila ananassae]
 gi|190614852|gb|EDV30376.1| GF22976 [Drosophila ananassae]
          Length = 649

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 19/75 (25%), Gaps = 1/75 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                   +   +          T              P ++  V +  L    G   SK
Sbjct: 368 WIMNPNGKSYVCILHEYVQHALKTQPTYEFKELQNAATP-YSATVSVKNLKYGTGFGTSK 426

Query: 209 RAAEQVAAAEVLKRE 223
           + A+  AA   L+  
Sbjct: 427 KQAKSEAARITLEIL 441


>gi|49237378|ref|YP_031659.1| ribonuclease III [Frog virus 3]
 gi|228861295|ref|YP_002854318.1| ribonuclease III [Soft-shelled turtle iridovirus]
 gi|47060196|gb|AAT09740.1| ribonuclease III [Frog virus 3]
 gi|194307575|gb|ACF42305.1| ribonuclease III [Soft-shelled turtle iridovirus]
          Length = 371

 Score = 49.2 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 71/217 (32%), Gaps = 17/217 (7%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVRF 75
           R L  K  T  S++    ++YE LE +GD +      +     F      +    ++   
Sbjct: 25  RDLWNKVFTPKSVN--PDDNYEALEIVGDGVASYFFPSYFLKRFPQLNSPKGVKTVARLK 82

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
               S ++ S +A  L    FIR  S       S   S+  D  E+ + A+ +    E +
Sbjct: 83  IYYGSKKSFSSIADSLGFWKFIR--SGPVPVNPSTRESLLEDTFEAFLGAVCMAVDDEYS 140

Query: 136 GT-FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD----HDPRFT 190
                     +           +      +                 G D    H    T
Sbjct: 141 IDGLGAVVAYKIMADIFDDMDISLEYTALFDTVTRLKELMDVKKDVLGGDAVYNHRGDTT 200

Query: 191 VVVEISGLAPAQGMDCSKRA-AEQVA--AAEVLKREG 224
           V + + G    +     KR  A++ A  A ++L+REG
Sbjct: 201 V-ITLKGRVIGKATGAIKRDRAKEAAGQALDLLRREG 236


>gi|195475660|ref|XP_002090102.1| GE19435 [Drosophila yakuba]
 gi|194176203|gb|EDW89814.1| GE19435 [Drosophila yakuba]
          Length = 1283

 Score = 48.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +   +    G   +K+ AE+ A  +
Sbjct: 5   SFLYEFCAKSRVEPKFDIRQTGPKNRQRFLCEVRVDPNIYIGVGNSTNKKDAEKNACRD 63


>gi|297722713|ref|NP_001173720.1| Os03g0854400 [Oryza sativa Japonica Group]
 gi|255675058|dbj|BAH92448.1| Os03g0854400 [Oryza sativa Japonica Group]
          Length = 176

 Score = 48.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 3/135 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +TL+ +I Y F    LL +A+TH+S S     +   L  LG        +         
Sbjct: 34  LATLQNQIAYRFHAPDLLRRAMTHASYSRENGRA---LAVLGLAASQSAAALRALAADHD 90

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A    +S R         C   A  + + S +RV++  +      +      ++ ++   
Sbjct: 91  ASASAVSRRARDASGEAACVAAAARVGIPSIVRVAAGTKPTAPPVVCGALRALIGAVAVD 150

Query: 126 LYLDGGIEVAGTFVD 140
                  E     + 
Sbjct: 151 ANSTHAAEEVFWKLH 165


>gi|159474642|ref|XP_001695434.1| double stranded RNA-binding protein [Chlamydomonas reinhardtii]
 gi|158275917|gb|EDP01692.1| double stranded RNA-binding protein [Chlamydomonas reinhardtii]
          Length = 1520

 Score = 48.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 191  VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            + V   G    +G D +K+ A+++AA E L+  GI
Sbjct: 1089 MAVIYDGKEIGRGADKTKKDAKRLAAIEALRHLGI 1123


>gi|27262835|emb|CAD59426.1| dsRNA-binding protein [Brassica oleracea var. gongylodes]
 gi|27262839|emb|CAD59428.1| dsRNA-binding protein [Brassica oleracea var. gemmifera]
          Length = 283

 Score = 48.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKRE 223
            GP H P F   V ++ +         +++AAEQ AA   L+  
Sbjct: 39  EGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALQEL 82



 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 25/72 (34%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                 K  LQE+A       P Y+          P+FT  VEI G+        +K+ A
Sbjct: 97  HEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEA 156

Query: 212 EQVAAAEVLKRE 223
           E  A    L   
Sbjct: 157 EISAGRTALIAI 168


>gi|27262837|emb|CAD59427.1| dsRNA-binding protein [Brassica oleracea var. italica]
          Length = 283

 Score = 48.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKRE 223
            GP H P F   V ++ +         +++AAEQ AA   L+  
Sbjct: 39  EGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALQEL 82



 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 25/72 (34%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                 K  LQE+A       P Y+          P+FT  VEI G+        +K+ A
Sbjct: 97  HEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEA 156

Query: 212 EQVAAAEVLKRE 223
           E  A    L   
Sbjct: 157 EISAGRTALIAI 168


>gi|27262831|emb|CAD59424.1| dsRNA-binding protein [Brassica oleracea var. acephala]
          Length = 283

 Score = 48.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKRE 223
            GP H P F   V ++ +         +++AAEQ AA   L+  
Sbjct: 39  EGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALQEL 82



 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 25/72 (34%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                 K  LQE+A       P Y+          P+FT  VEI G+        +K+ A
Sbjct: 97  HEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEA 156

Query: 212 EQVAAAEVLKRE 223
           E  A    L   
Sbjct: 157 EISAGRTALIAI 168


>gi|326468912|gb|EGD92921.1| RNase3 domain-containing protein [Trichophyton tonsurans CBS
           112818]
 gi|326480108|gb|EGE04118.1| double-strand-specific pac1 ribonuclease [Trichophyton equinum CBS
           127.97]
          Length = 399

 Score = 48.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 29/225 (12%)

Query: 23  LEKA-LTH-------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           L+ A  TH          + + +++Y+RLE LGD  + L+ + L++ +F +   G+++  
Sbjct: 138 LKTAVFTHTGIMERGPVSTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKIAQA 197

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             ++V  ET ++ A        ++ SSD++  V    T +  DV E+ +AA  +      
Sbjct: 198 RETMVKNETLAEYAIAYGFDQLLKTSSDIK-SVPKRWTKVMGDVFEAYVAAAIIADPKGG 256

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-----DHDPR- 188
                    +    K  + +    +                      G      +  PR 
Sbjct: 257 LRAVESWLSQLWLPKLAEVKVPLASVTLAQGSKASFKDKLAATVMSRGIKLQYLEEKPRQ 316

Query: 189 --------FTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220
                   F +   ++G          G   SK  A   AA   L
Sbjct: 317 REGGLVTSF-IGAYLTGWGYEKKLLGSGSGLSKSEAGNEAALNAL 360


>gi|224104957|ref|XP_002313634.1| predicted protein [Populus trichocarpa]
 gi|222850042|gb|EEE87589.1| predicted protein [Populus trichocarpa]
          Length = 484

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 2/93 (2%)

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
                        +                     +    +  ++       +SG  H P
Sbjct: 171 WKNCDLPTYYNTREGPSHAPCFKATDDSGFYKNALQELAQREDLSMPVYKIIKSGALHMP 230

Query: 188 RFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEV 219
            F   VEI G     +    SK+ AE  +A   
Sbjct: 231 TFFSYVEIEGEKFYGKA-GKSKKEAELKSARAA 262



 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219
            GPDH P F   V ++G++  +     S + A   AA   
Sbjct: 25  DGPDHTPCFKASVYVNGISFHSSASCKSSKDAHNDAAKMA 64


>gi|198457607|ref|XP_001360731.2| GA19106 [Drosophila pseudoobscura pseudoobscura]
 gi|198136042|gb|EAL25306.2| GA19106 [Drosophila pseudoobscura pseudoobscura]
          Length = 1008

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         +T +Y++T   GP H   FTV +++             + A+ +AA+
Sbjct: 316 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLKLGDEEY-SADGFKIKKAQHMAAS 374

Query: 218 EVLK 221
             ++
Sbjct: 375 RAIE 378



 Score = 44.5 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            +  T+L +    +    P +++  ++G +      F + V  SG   A+G   SK+ A+
Sbjct: 717 ENPITKLIQLQQTRKEKEPIFELIAKNGNEASRRREFVMEVSASGTT-ARGTGNSKKLAK 775

Query: 213 QVAAAEVLKRE 223
           + AA  +L+  
Sbjct: 776 RSAAQALLELL 786



 Score = 42.6 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV--- 219
                K  +T  +KV    GP H   F     + G    +G    K+ +++ +A ++   
Sbjct: 591 HEIGIKRNMTVHFKVLREDGPAHMKNFITACVV-GSIVTEGEGNGKKLSKKRSAEKMLTE 649

Query: 220 LKRE 223
           L++ 
Sbjct: 650 LQKL 653


>gi|195383442|ref|XP_002050435.1| stau [Drosophila virilis]
 gi|194145232|gb|EDW61628.1| stau [Drosophila virilis]
          Length = 1100

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L  
Sbjct: 656 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKLSKKRAAEKMLSE 714

Query: 223 E 223
            
Sbjct: 715 L 715



 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         +T +Y++T   GP H   FTV +++             + A+ +AA+
Sbjct: 378 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAAS 436

Query: 218 EVLK 221
           + ++
Sbjct: 437 KAIE 440



 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            +  T+L +    +    P +++  ++G +      F + V  SG   A+G   SK+ A+
Sbjct: 783 ENPITKLIQLQQTRKEKEPIFELIAKNGNETSRRREFVMEVSASGS-IARGTGNSKKLAK 841

Query: 213 QVAAAEVLKRE 223
           + AA  +L+  
Sbjct: 842 RNAAQALLELL 852


>gi|7229532|gb|AAF42865.1|AF225924_1 staufen [Drosophila virilis]
          Length = 1062

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L  
Sbjct: 613 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKLSKKRAAEKMLSE 671

Query: 223 E 223
            
Sbjct: 672 L 672



 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         +T +Y++T   GP H   FTV +++             + A+ +AA+
Sbjct: 335 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAAS 393

Query: 218 EVLK 221
           + ++
Sbjct: 394 KAIE 397



 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            +  T+L +    +    P +++  ++G +      F + V  SG   A+G   SK+ A+
Sbjct: 740 ENPITKLIQLQQTRKEKEPIFELIAKNGNETSRRREFVMEVSASGS-IARGTGNSKKLAK 798

Query: 213 QVAAAEVLKRE 223
           + AA  +L+  
Sbjct: 799 RNAAQALLELL 809


>gi|170042672|ref|XP_001849041.1| ribonuclease iii [Culex quinquefasciatus]
 gi|167866168|gb|EDS29551.1| ribonuclease iii [Culex quinquefasciatus]
          Length = 300

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 22/160 (13%)

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               +   L++ ++S V+    + +  +L + S+   S+          T  +AD++E+ 
Sbjct: 101 CFLFRIPALTLLWSSQVNNRNQAVICDDLGMTSYAVYSNKQADLK----TKERADLLEAF 156

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + ALY+D G+                     +R   T +   A        + +V   +G
Sbjct: 157 LGALYVDKGL------------------NTAKRSPTTGMTRRASCSRAGHSDLQVIECNG 198

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P +   +T+ V   G   A     S +  E  AA + L+ 
Sbjct: 199 PTNTRVYTMAVYFRGKHLACCNGHSMQQVEINAAKQALEN 238


>gi|326429032|gb|EGD74602.1| DEAH box polypeptide 34 [Salpingoeca sp. ATCC 50818]
          Length = 1912

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 16/46 (34%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GP H P F   V +  L         K+ A Q A  + ++   
Sbjct: 25  DPVGPPHMPTFECTVSVGSLVSCSARGGGKKTAMQDACKQAVEALK 70


>gi|242032197|ref|XP_002463493.1| hypothetical protein SORBIDRAFT_01g000740 [Sorghum bicolor]
 gi|241917347|gb|EER90491.1| hypothetical protein SORBIDRAFT_01g000740 [Sorghum bicolor]
          Length = 183

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 6  YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE 38
           + L+ R+GYAF   SLL +A+TH+S S     
Sbjct: 41 LAALQSRVGYAFRAPSLLRRAMTHASYSRENGR 73


>gi|195436531|ref|XP_002066221.1| GK22054 [Drosophila willistoni]
 gi|194162306|gb|EDW77207.1| GK22054 [Drosophila willistoni]
          Length = 1106

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         +T +Y++T   GP H   FTV +++             + A+ +AA+
Sbjct: 353 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLKLGDEEY-SADGFKIKKAQHLAAS 411

Query: 218 EVLK 221
           + ++
Sbjct: 412 KAIE 415



 Score = 44.5 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 42/182 (23%), Gaps = 5/182 (2%)

Query: 46  LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
           LG   +                    + R+            A            S +  
Sbjct: 535 LGGPPMHPHGIYGGHQRTGQYPAKYHASRYALPPPPPHLMHGAYGAHHTPMPVTPSKITL 594

Query: 106 DVCSFMT----SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
            V                    A        + + T      +       +  + +    
Sbjct: 595 FVGKQKFVGTGRTLQQAKHDAAARALQVLKTQASATATSASDEALEDSMDEGDKKSPISQ 654

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                 K  +T  +KV    GP H   F     + G    +G    K+ +++ +A ++L 
Sbjct: 655 VHEIGIKRSMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKISKKRSAEKMLI 713

Query: 222 RE 223
             
Sbjct: 714 EL 715



 Score = 37.6 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 5/88 (5%)

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR----FTVVVEIS 196
                  +  G  R          +       P + +    G  H P       + + + 
Sbjct: 538 PPMHPHGIYGGHQRTGQYPAKYHASRYALPPPPPHLMHGAYGAHHTPMPVTPSKITLFV- 596

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           G     G   + + A+  AAA  L+   
Sbjct: 597 GKQKFVGTGRTLQQAKHDAAARALQVLK 624



 Score = 36.1 bits (81), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            +  T+L +    +    P +++  ++G D      F + V  +G   A+G   SK+ A+
Sbjct: 782 ENPITKLIQLQQNRKDKEPIFELIAKNGNDTSRRREFVMEVSANGST-ARGTGNSKKLAK 840

Query: 213 QV 214
           + 
Sbjct: 841 RN 842


>gi|10438400|dbj|BAB15238.1| unnamed protein product [Homo sapiens]
 gi|37779134|gb|AAO86726.1| LP4941 protein [Homo sapiens]
          Length = 303

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 72  FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 106


>gi|157382880|gb|ABV48875.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157382874|gb|ABV48872.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157382872|gb|ABV48871.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157382868|gb|ABV48869.1| maleless [Drosophila melanogaster]
 gi|157382870|gb|ABV48870.1| maleless [Drosophila melanogaster]
 gi|157382876|gb|ABV48873.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157382866|gb|ABV48868.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157382862|gb|ABV48866.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157382860|gb|ABV48865.1| maleless [Drosophila melanogaster]
 gi|157382864|gb|ABV48867.1| maleless [Drosophila melanogaster]
 gi|157382878|gb|ABV48874.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157382858|gb|ABV48864.1| maleless [Drosophila melanogaster]
          Length = 1286

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157382856|gb|ABV48863.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157382854|gb|ABV48862.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157382852|gb|ABV48861.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157824892|gb|ABV82525.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157824890|gb|ABV82524.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157824888|gb|ABV82523.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157824886|gb|ABV82522.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157824884|gb|ABV82521.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157824882|gb|ABV82520.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157824878|gb|ABV82518.1| maleless [Drosophila melanogaster]
 gi|157824880|gb|ABV82519.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157824876|gb|ABV82517.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157906|gb|AAC41573.1| maleless protein [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|62474635|ref|NP_476642.3| maleless, isoform B [Drosophila melanogaster]
 gi|61678431|gb|AAM68336.3| maleless, isoform B [Drosophila melanogaster]
          Length = 226

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|17136342|ref|NP_476641.1| maleless, isoform A [Drosophila melanogaster]
 gi|76803804|sp|P24785|MLE_DROME RecName: Full=Dosage compensation regulator; AltName:
           Full=ATP-dependent RNA helicase mle; AltName:
           Full=Protein male-less; AltName: Full=Protein maleless;
           AltName: Full=Protein no action potential
 gi|7302201|gb|AAF57297.1| maleless, isoform A [Drosophila melanogaster]
          Length = 1293

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|255934909|ref|XP_002558481.1| Pc13g00300 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583101|emb|CAP91099.1| Pc13g00300 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 144

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 6/129 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              +E  + Y F ++SLL+KA      +   +  ++R   +GD  L L+++ L +    S
Sbjct: 10  IRAIESILNYEFHDKSLLDKAFEAP-GATEARGGHQRQALIGDAALKLVLTELGYEGNAS 68

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             E  +S    S VS E   ++   L L ++ R++            S+ A  +E++I A
Sbjct: 69  TGEITISR--GSRVSNENLKRLGESLGLNAYFRLNPA---SQGVVPRSMMATTMEAIIGA 123

Query: 126 LYLDGGIEV 134
           +YLD G ++
Sbjct: 124 VYLDSGKDM 132


>gi|167535410|ref|XP_001749379.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772245|gb|EDQ85900.1| predicted protein [Monosiga brevicollis MX1]
          Length = 234

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                SGP+H   +T    +   +   G   SK+ +EQ AA   ++   
Sbjct: 55  YEHRASGPEHSLAWTSTCRLYDQSVYTGYGVSKKMSEQNAAHNAVQGLK 103



 Score = 39.5 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 191 VVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           + V +   + +    G   +KR A+Q AA ++L +    T
Sbjct: 194 IGVYVKSRNQVFLGVGSAATKRDADQRAAKDLLHKLKRTT 233


>gi|85719268|ref|YP_460036.1| VP11 [Liao ning virus]
 gi|56785927|gb|AAW29094.1| VP11 [Liao ning virus]
          Length = 198

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y+     GP H+  FT+          +G+  SK+ A  VAA ++L
Sbjct: 28  YEDVGFEGPPHNRSFTISATFRDKKY-EGIGPSKKVARSVAANKIL 72


>gi|312377844|gb|EFR24577.1| hypothetical protein AND_10726 [Anopheles darlingi]
          Length = 199

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV---LKR 222
            +  V         +GP H  RF   V + G      G   +K+ +E+ AA +    L R
Sbjct: 12  CQKNVVEPSFEVRPTGPKHRQRFLCEVRLPGYNYTGVGNSTNKKDSEKNAARDFVHYLVR 71

Query: 223 EG 224
            G
Sbjct: 72  IG 73


>gi|208690895|gb|ACI31223.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Callicebus moloch]
          Length = 551

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E   +  +GP+    F    ++           +K+ A+Q+AA     + 
Sbjct: 115 VNYEQCASGVNGPEG---FHYKCKVGQKEYGIATGSTKQEAKQLAAKLAYLQI 164



 Score = 40.3 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I G    +    S
Sbjct: 32  NSGPPHDRRFTFQVIIDGREFPEAEGRS 59


>gi|327301473|ref|XP_003235429.1| RNase3 domain-containing protein [Trichophyton rubrum CBS 118892]
 gi|326462781|gb|EGD88234.1| RNase3 domain-containing protein [Trichophyton rubrum CBS 118892]
          Length = 399

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 29/225 (12%)

Query: 23  LEKA-LTH-------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           L+ A  TH          + + +++Y+RLE LGD  + L+ + L++ +F +   G+++  
Sbjct: 138 LKTAVFTHTGIMERGPISTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKIAQA 197

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             ++V  ET ++ A        ++ SSD++  V    T +  DV E+ +AA  +      
Sbjct: 198 RETMVKNETLAEYAVAYGFDQLLKTSSDIK-SVPKRWTKVMGDVFEAYVAAAIIADPKGG 256

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-----DHDPR- 188
                    +    K  + +    +                      G      +  PR 
Sbjct: 257 LRAVESWLTQLWLPKLAEVKVPLASVTLAQGSKASFKDKLAATVMSRGIKLQYLEEKPRQ 316

Query: 189 --------FTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220
                   F +   ++G          G   SK  A   AA   L
Sbjct: 317 REGGLVTSF-IGAYLTGWGYEKKLLGSGSGLSKSEAGNEAALNAL 360


>gi|195027427|ref|XP_001986584.1| GH20445 [Drosophila grimshawi]
 gi|193902584|gb|EDW01451.1| GH20445 [Drosophila grimshawi]
          Length = 1053

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         +T +Y++T   GP H   FTV +++             + A+ +AA+
Sbjct: 327 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAAS 385

Query: 218 EVLK 221
           + ++
Sbjct: 386 KAIE 389



 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            +  T+L +    +    P +++  ++G +      F + V  SG   A+G   SK+ A+
Sbjct: 738 ENPITKLIQLQQTRKEKEPIFELIAKNGNESSRRREFVIEVCASGN-IARGTGNSKKLAK 796

Query: 213 QVAAAEVLKRE 223
           + AA  +L+  
Sbjct: 797 RNAAQALLELL 807



 Score = 43.0 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             +  + +          +  +T  +KV    GP H   F     + G    +G    K+
Sbjct: 595 MDENDKKSPISQVHEIGIRRNMTVHFKVLREEGPAHMKNFITACIV-GAIVTEGEGNGKK 653

Query: 210 AAEQVAAAEVLKRE 223
            +++ +A ++L   
Sbjct: 654 LSKKRSAEKMLIEL 667


>gi|194755679|ref|XP_001960111.1| GF13203 [Drosophila ananassae]
 gi|190621409|gb|EDV36933.1| GF13203 [Drosophila ananassae]
          Length = 1036

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         +T +Y++T   GP H   FTV +++             + A+ +AA+
Sbjct: 318 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAAS 376

Query: 218 EVLK 221
           + ++
Sbjct: 377 KAIE 380



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L   
Sbjct: 599 MTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKLSKKRAAEKMLIEL 650



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            +  T++ +    +    P +++  ++G +      F + V  SG   A+G   SK+ A+
Sbjct: 725 ENPITKVIQLQQMRKEKEPIFELIAKNGNETSRRREFVMEVTASGST-ARGTGNSKKLAK 783

Query: 213 QVAAAEVLKRE 223
           + AA  +L+  
Sbjct: 784 RNAAQALLELL 794


>gi|195584465|ref|XP_002082027.1| GD25416 [Drosophila simulans]
 gi|194194036|gb|EDX07612.1| GD25416 [Drosophila simulans]
          Length = 1035

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         +T +Y++T   GP H   FTV + +             + A+ +AA+
Sbjct: 314 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAAS 372

Query: 218 EVLK 221
           + ++
Sbjct: 373 KAIE 376



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV--- 219
                K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++   
Sbjct: 586 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLVE 644

Query: 220 LKRE 223
           L++ 
Sbjct: 645 LQKL 648



 Score = 43.0 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSK 208
                +  T+L +    +    P +++  ++G +      F + V  SG   A+G   SK
Sbjct: 708 MDDADNPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASGST-ARGTGNSK 766

Query: 209 RAAEQVAAAEVLKRE 223
           + A++ AA  + +  
Sbjct: 767 KLAKRNAAQALFELL 781


>gi|195487615|ref|XP_002091980.1| GE13936 [Drosophila yakuba]
 gi|194178081|gb|EDW91692.1| GE13936 [Drosophila yakuba]
          Length = 1037

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         +T +Y++T   GP H   FTV + +             + A+ +AA+
Sbjct: 316 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAAS 374

Query: 218 EVLK 221
           + ++
Sbjct: 375 KAIE 378



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L  
Sbjct: 588 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLIE 646

Query: 223 E 223
            
Sbjct: 647 L 647



 Score = 42.2 bits (97), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            +  T+L +    +    P +++  ++G +      F + V  SG   A+G   SK+ A+
Sbjct: 714 DNPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASGST-ARGTGNSKKLAK 772

Query: 213 QVAAAEVLKRE 223
           + AA  + +  
Sbjct: 773 RNAAQALFELL 783


>gi|195335472|ref|XP_002034389.1| GM19927 [Drosophila sechellia]
 gi|194126359|gb|EDW48402.1| GM19927 [Drosophila sechellia]
          Length = 1035

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         +T +Y++T   GP H   FTV + +             + A+ +AA+
Sbjct: 314 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAAS 372

Query: 218 EVLK 221
           + ++
Sbjct: 373 KAIE 376



 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV--- 219
                K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++   
Sbjct: 586 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLVE 644

Query: 220 LKRE 223
           L++ 
Sbjct: 645 LQKL 648



 Score = 43.0 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSK 208
                +  T+L +    +    P +++  ++G +      F + V  SG   A+G   SK
Sbjct: 708 MDDADNPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASGST-ARGTGNSK 766

Query: 209 RAAEQVAAAEVLKRE 223
           + A++ AA  + +  
Sbjct: 767 KLAKRNAAQALFELL 781


>gi|194880953|ref|XP_001974617.1| GG20993 [Drosophila erecta]
 gi|190657804|gb|EDV55017.1| GG20993 [Drosophila erecta]
          Length = 1034

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L         +T +Y++T   GP H   FTV + +             + A+ +AA+
Sbjct: 313 PMCLVNELARYNKITHQYRLTGERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAAS 371

Query: 218 EVLK 221
           + ++
Sbjct: 372 KAIE 375



 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L  
Sbjct: 585 HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLIE 643

Query: 223 E 223
            
Sbjct: 644 L 644



 Score = 42.2 bits (97), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            +  T+L +    +    P +++  ++G +      F + V  SG   A+G   SK+ A+
Sbjct: 711 DNPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASGST-ARGTGNSKKLAK 769

Query: 213 QVAAAEVLKRE 223
           + AA  + +  
Sbjct: 770 RNAAQALFELL 780


>gi|157939656|ref|YP_001497028.1| dsRNA-binding [Tanapox virus]
 gi|146746372|gb|ABQ43508.1| dsRNA-binding [Tanapox virus]
 gi|146746528|gb|ABQ43663.1| dsRNA-binding [Tanapox virus]
          Length = 181

 Score = 48.8 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 29/99 (29%)

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
                   +     +        +      K     +D    +    + +F         
Sbjct: 69  WFKNYNGEHDSKLEQKHHIPNHIFSDTVPYKKIINWKDKNPCIVLNEYCQFTCRDWSIDI 128

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
             SG  H P FT  V ISG+     +  +KR A+  A+ 
Sbjct: 129 TTSGKSHCPMFTATVIISGIKFKPAIGNTKREAKYNASK 167


>gi|156373860|ref|XP_001629528.1| predicted protein [Nematostella vectensis]
 gi|156216530|gb|EDO37465.1| predicted protein [Nematostella vectensis]
          Length = 949

 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 189 FTVVVEISGLAPAQGMDCS-KRAAEQVAAAEVLKREGI 225
           F   V   G+     +  S K+AAEQ AA   L+  G+
Sbjct: 168 FIAEVNFEGVRYKSKIAHSTKKAAEQNAAESALQALGL 205



 Score = 42.2 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            F   V   G     G    ++AAEQ AA + LK  
Sbjct: 53  HFVSNVLAVGQNFTGGYCSKRKAAEQDAAKQALKNI 88


>gi|195401473|ref|XP_002059337.1| GJ18398 [Drosophila virilis]
 gi|194142343|gb|EDW58749.1| GJ18398 [Drosophila virilis]
          Length = 1362

 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
              +++     T        +GP H  RF   V +      A G   +K+ AE+ A+ +
Sbjct: 5   SFLFSYCAKNQTEPKFEVRPTGPKHRQRFLCEVRVDQCPYVAVGNSTNKKDAEKNASRD 63


>gi|323332393|gb|EGA73802.1| Mrpl15p [Saccharomyces cerevisiae AWRI796]
 gi|323353848|gb|EGA85703.1| Mrpl15p [Saccharomyces cerevisiae VL3]
          Length = 248

 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 14/135 (10%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           + G   +N  L+ + LTH S +H  +   E+L  LG + L L        +   A+  E 
Sbjct: 72  KYGINLSN-ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 130

Query: 72  SVRFNSL-------------VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
                                +          L    F ++   ++    +  T+I A V
Sbjct: 131 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDPIKDGHINGETTIFASV 190

Query: 119 VESLIAALYLDGGIE 133
           + + I A+    G E
Sbjct: 191 LNAFIGAILSTNGSE 205


>gi|302816661|ref|XP_002990009.1| hypothetical protein SELMODRAFT_130786 [Selaginella moellendorffii]
 gi|300142320|gb|EFJ09022.1| hypothetical protein SELMODRAFT_130786 [Selaginella moellendorffii]
          Length = 127

 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           Y F + +LL+ ALTHSS S     +   L  LG  I+   +          A + EL   
Sbjct: 1   YKFNDSTLLQDALTHSSYSRH---NNGPLHLLGVSIIRASVYKHYLAKNRDATKEELEAM 57

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
            +SL S   C++ A  L L   IR    +          + A     L  A+ +DG  + 
Sbjct: 58  SSSLSSTTACARRASGLGLDKLIRADVPVD----RKSDKVLAVAFHVLFGAIAMDGSADQ 113

Query: 135 AGTFVD 140
           A +   
Sbjct: 114 AMSVFW 119


>gi|26324344|dbj|BAC25926.1| unnamed protein product [Mus musculus]
          Length = 125

 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +      L         + P+YK+   SGP H   F+V + +      +    S +
Sbjct: 1   MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTW-ESEGSSIK 59

Query: 210 AAEQVAAAEVL 220
            A+Q  A + L
Sbjct: 60  KAQQAVANKAL 70


>gi|19851824|gb|AAL99894.1| interferon resistance protein [goat proliferative dermatitis virus]
          Length = 183

 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                + E+  T   G DH P FT  + I G   A     SK+ A   A A  L
Sbjct: 119 MMTHRSLEFCETRSGGKDHCPLFTCTITIFGKVVAAADGASKKLARHTACASAL 172


>gi|225734446|gb|ACO25214.1| RNase III [Epizootic haematopoietic necrosis virus]
          Length = 372

 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 71/217 (32%), Gaps = 17/217 (7%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVRF 75
           R L  K  T  S++    ++YE LE +GD +      +     F      +    ++   
Sbjct: 25  RDLWNKVFTPKSVN--PDDNYEALEIMGDGVASYFFPSYFLKRFPQLNSPKGVKTVARLK 82

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
               S ++ S +A  L    FIR  S       S   S+  D  E+ + A+      E +
Sbjct: 83  IYYGSKKSFSSIADSLGFWKFIR--SGPVPVNPSTRESLLEDTFEAFLGAVCTAVDDEYS 140

Query: 136 GT-----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
                     K                          +     +  +   +  DH    T
Sbjct: 141 IDGLGAVVAYKIMADIFDDMDISLEYTALFDTVTRLKELMDVKKDVLGGDAVYDHRGDTT 200

Query: 191 VVVEISGLAPAQGMDCSKRA-AEQVA--AAEVLKREG 224
           V + + G    +     KR  A++ A  A ++L+REG
Sbjct: 201 V-ITLKGRVIGKATGAIKRDRAKEAAGQALDLLRREG 236


>gi|268561546|ref|XP_002646471.1| Hypothetical protein CBG19440 [Caenorhabditis briggsae]
 gi|187024149|emb|CAP36691.1| CBR-ADR-1 protein [Caenorhabditis briggsae AF16]
          Length = 1012

 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P F     I       G   SK+ A+  AA   LKR
Sbjct: 608 PVFYCDCVIDEERF-TGSGRSKKLAKNAAAVVALKR 642


>gi|30693732|ref|NP_198923.2| DRB5 (DSRNA-BINDING PROTEIN 5); double-stranded RNA binding
           [Arabidopsis thaliana]
 gi|75244423|sp|Q8GY79|DRB5_ARATH RecName: Full=Double-stranded RNA-binding protein 5; AltName:
           Full=dsRNA-binding protein 5; Short=AtDRB5
 gi|26450682|dbj|BAC42450.1| unknown protein [Arabidopsis thaliana]
 gi|32189297|gb|AAP75803.1| At5g41070 [Arabidopsis thaliana]
 gi|332007250|gb|AED94633.1| dsRNA-binding protein 5 [Arabidopsis thaliana]
          Length = 393

 Score = 48.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
           SG  H P F+  VE++G+        +K+ AE+ AA      LK+ 
Sbjct: 111 SGSCHFPGFSCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM 156



 Score = 42.2 bits (97), Expect = 0.047,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220
                     R GPDH PRF   V  +G          + R AE  AA   L
Sbjct: 14  CFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAAAEVSL 65


>gi|159795592|pdb|2YT4|A Chain A, Crystal Structure Of Human Dgcr8 Core
          Length = 232

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 54  FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 88


>gi|302819687|ref|XP_002991513.1| hypothetical protein SELMODRAFT_429800 [Selaginella moellendorffii]
 gi|300140715|gb|EFJ07435.1| hypothetical protein SELMODRAFT_429800 [Selaginella moellendorffii]
          Length = 850

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             +LE ++ Y F NRSLL +A+TH+S   +    Y+     G   L   I   + N  + 
Sbjct: 649 LESLEHKLQYKFQNRSLLVEAITHAS-QPNCLLCYQ----HGSVELDCEIRKFVQNVKEK 703

Query: 66  AKEGELSVRFNSLV 79
                     +  V
Sbjct: 704 PDASCFDDLSSPKV 717


>gi|256052736|ref|XP_002569908.1| hypothetical protein [Schistosoma mansoni]
 gi|227284660|emb|CAY17406.1| expressed protein [Schistosoma mansoni]
          Length = 732

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 1/67 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K+ +         V         +  +++   + + V I+G     G   SK+ A   AA
Sbjct: 441 KSYVCILHEYCQNVIRRPPTYQTTVLENEKNPYQMTVFINGNPYGTGAGQSKKCARLEAA 500

Query: 217 AEVLKRE 223
            + L+  
Sbjct: 501 RKALEVL 507


>gi|33415073|gb|AAQ18044.1| double-stranded RNA-binding protein [Human orf virus]
          Length = 183

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                  E+  T   G DH PRFT  + IS    A     SK+ A   A +  L
Sbjct: 119 MMTRRPLEFCETRSGGEDHCPRFTCTITISEKVVAAADGASKKLARHTACSSAL 172


>gi|321253833|ref|XP_003192867.1| hypothetical protein CGB_C5530W [Cryptococcus gattii WM276]
 gi|317459336|gb|ADV21080.1| hypothetical protein CNC03670 [Cryptococcus gattii WM276]
          Length = 916

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR---- 74
           +  L  +ALT  S  +    +YERLE LGD +L   I+  ++ H   A   E S++    
Sbjct: 444 HPELALQALTAPSSVNVTPWTYERLEILGDTLLKFFITIHVYLHGGGANSREDSLKVWQD 503

Query: 75  FNSLVSAETCSQVARELDLASFIR 98
            + LVS  T +  A +L L  ++R
Sbjct: 504 RHKLVSNRTLTANAIKLGLVDYVR 527


>gi|126324741|ref|XP_001376883.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8
           [Monodelphis domestica]
          Length = 907

 Score = 48.4 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 21/60 (35%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             + +  +      TF    +    F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 651 HEYMQRVLKVRPVYTFFECENPSEPFGASVTIDGVTYGAGTASSKKLAKNKAARATLEIL 710


>gi|240848923|ref|NP_001155644.1| protein kinase, interferon inducible double stranded RNA dependent
           activator-like [Acyrthosiphon pisum]
 gi|239790447|dbj|BAH71784.1| ACYPI005748 [Acyrthosiphon pisum]
          Length = 339

 Score = 48.0 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 1/89 (1%)

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
                D      +      + +A  +L +         PE+ +    G  H   FT+   
Sbjct: 98  DFKQWDFDNHVVSPFDNNIKVNAVGQLNDICTNNKLGLPEFNLVREEGQAHAKLFTISCH 157

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++          +K+ A+ +AA +++ + 
Sbjct: 158 VA-KMIETATHKTKKQAKHLAAVQMVNKL 185



 Score = 42.6 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 174 EYKVTFRSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                  +G  H    F   + +     A G   SK+ A+ VAA  +LK
Sbjct: 38  PQYDLIHNGVSHSKVSFKYSLTLDDYV-AVGDGSSKKEAKHVAALNLLK 85


>gi|213495740|gb|ACJ49090.1| double-stranded RNA activated protein kinase [Mustela putorius
           furo]
          Length = 78

 Score = 48.0 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 22  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 60


>gi|159164135|pdb|2DIX|A Chain A, Solution Structure Of The Dsrm Domain Of Protein Activator
           Of The Interferon-Induced Protein Kinase
          Length = 84

 Score = 48.0 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 37  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 75


>gi|119631442|gb|EAX11037.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator, isoform CRA_d [Homo sapiens]
          Length = 105

 Score = 48.0 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FT  V +  +    G   SK+ A+  AA   +    
Sbjct: 62  HVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAINILK 100


>gi|224140399|ref|XP_002323570.1| predicted protein [Populus trichocarpa]
 gi|222868200|gb|EEF05331.1| predicted protein [Populus trichocarpa]
          Length = 563

 Score = 48.0 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            R    V  +G     GM  +++ A+Q AA   L
Sbjct: 467 RRCRSKVLFTGEKIGVGMGKTRKDAQQQAAENAL 500


>gi|302819689|ref|XP_002991514.1| hypothetical protein SELMODRAFT_429802 [Selaginella moellendorffii]
 gi|300140716|gb|EFJ07436.1| hypothetical protein SELMODRAFT_429802 [Selaginella moellendorffii]
          Length = 569

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             +LE ++ Y F NRSLL +A+TH+S   +    Y+     G   L   I   + N  + 
Sbjct: 387 LESLEHKLQYKFQNRSLLVEAITHAS-QPNCLLCYQ----HGSVELDCEIRKFVQNVKEK 441

Query: 66  AKEGELSVRFNSLV 79
                        V
Sbjct: 442 PDASCFEDLSAPKV 455


>gi|156839185|ref|XP_001643286.1| hypothetical protein Kpol_1027p2 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113890|gb|EDO15428.1| hypothetical protein Kpol_1027p2 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 242

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 4/75 (5%)

Query: 7   STLEKRIG---YAFANRS-LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
             ++K +    Y     + LL +  TH S +H  +   E+L  LG + L L       + 
Sbjct: 59  EKIDKILNLSKYDIKVPNDLLLQCFTHKSFAHGIKPYNEKLSLLGLQFLKLQAGIYSISQ 118

Query: 63  FDSAKEGELSVRFNS 77
             +    +       
Sbjct: 119 SVNLSPVQAGKIQKQ 133


>gi|207342841|gb|EDZ70480.1| YLR312W-Ap-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256270407|gb|EEU05604.1| Mrpl15p [Saccharomyces cerevisiae JAY291]
 gi|259148294|emb|CAY81541.1| Mrpl15p [Saccharomyces cerevisiae EC1118]
 gi|323336359|gb|EGA77627.1| Mrpl15p [Saccharomyces cerevisiae Vin13]
 gi|323347380|gb|EGA81652.1| Mrpl15p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 253

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 14/135 (10%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           + G   +N  L+ + LTH S +H  +   E+L  LG + L L        +   A+  E 
Sbjct: 77  KYGINLSN-ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 135

Query: 72  SVRFNSL-------------VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
                                +          L    F ++   ++    +  T+I A V
Sbjct: 136 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDPIKDGHINGETTIFASV 195

Query: 119 VESLIAALYLDGGIE 133
           + + I A+    G E
Sbjct: 196 LNAFIGAILSTNGSE 210


>gi|198423460|ref|XP_002126266.1| PREDICTED: similar to SON DNA-binding protein [Ciona intestinalis]
          Length = 140

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
           +   + L E    +    P +++   SGPDH   F   V I+G          +K+ A+ 
Sbjct: 64  KHPVSALMEICSKRKWSQPNFQLVHNSGPDHQRFFMFKVTINGQEYQPSTPSVNKKLAKA 123

Query: 214 VAAAEVLKREGIW 226
            +A+  L+  G+ 
Sbjct: 124 NSASVALQGMGLI 136


>gi|190405368|gb|EDV08635.1| 60S ribosomal protein L15, mitochondrial precursor [Saccharomyces
           cerevisiae RM11-1a]
          Length = 234

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 14/135 (10%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           + G   +N  L+ + LTH S +H  +   E+L  LG + L L        +   A+  E 
Sbjct: 58  KYGINLSN-ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 116

Query: 72  SVRFNSL-------------VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
                                +          L    F ++   ++    +  T+I A V
Sbjct: 117 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDSIKDGHINGETTIFASV 176

Query: 119 VESLIAALYLDGGIE 133
           + + I A+    G E
Sbjct: 177 LNAFIGAILSTNGSE 191


>gi|151940843|gb|EDN59225.1| YmL15 [Saccharomyces cerevisiae YJM789]
          Length = 234

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 14/135 (10%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           + G   +N  L+ + LTH S +H  +   E+L  LG + L L        +   A+  E 
Sbjct: 58  KYGINLSN-ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 116

Query: 72  SVRFNSL-------------VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
                                +          L    F ++   ++    +  T+I A V
Sbjct: 117 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDPIKDGHINGETTIFASV 176

Query: 119 VESLIAALYLDGGIE 133
           + + I A+    G E
Sbjct: 177 LNAFIGAILSTNGSE 191


>gi|91084275|ref|XP_971282.1| PREDICTED: similar to double-stranded binding protein, putative
           [Tribolium castaneum]
 gi|270008749|gb|EFA05197.1| hypothetical protein TcasGA2_TC015332 [Tribolium castaneum]
          Length = 563

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 1/74 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAPAQGMDCSKR 209
                + K+ +            +      +  ++    +   V I+ +    G   SK+
Sbjct: 282 WIMNPNGKSYVCILHEYVQHALKKQPTYKFTELENAATPYAATVSINDMQYGVGYGTSKK 341

Query: 210 AAEQVAAAEVLKRE 223
            A+  AA   L+  
Sbjct: 342 QAKSEAARATLEIL 355


>gi|297740849|emb|CBI31031.3| unnamed protein product [Vitis vinifera]
          Length = 931

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 18/37 (48%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           F   +++   +        K+ AEQ AA + L++ G+
Sbjct: 56  FRCSLQLPEFSVVSEYFKRKKDAEQSAAEKALRKLGV 92


>gi|297736909|emb|CBI26110.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAE---VLKRE 223
             T RSGP H P F   V+I+      G    +K+ A++ AA      LKR 
Sbjct: 106 YTTVRSGPGHIPVFFCTVDIA-KMSFTGEPAKTKKQAQKNAAMAAWSALKRL 156



 Score = 46.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220
                     R GPDH PRF   V  +G          + R AE  AA   L
Sbjct: 14  CFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAAAEVAL 65


>gi|225444071|ref|XP_002264328.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 886

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 18/37 (48%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           F   +++   +        K+ AEQ AA + L++ G+
Sbjct: 56  FRCSLQLPEFSVVSEYFKRKKDAEQSAAEKALRKLGV 92


>gi|225432380|ref|XP_002276654.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 563

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAE---VLKRE 223
             T RSGP H P F   V+I+      G    +K+ A++ AA      LKR 
Sbjct: 106 YTTVRSGPGHIPVFFCTVDIA-KMSFTGEPAKTKKQAQKNAAMAAWSALKRL 156



 Score = 46.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220
                     R GPDH PRF   V  +G          + R AE  AA   L
Sbjct: 14  CFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAAAEVAL 65


>gi|194758212|ref|XP_001961356.1| GF13828 [Drosophila ananassae]
 gi|190622654|gb|EDV38178.1| GF13828 [Drosophila ananassae]
          Length = 1339

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              + +             ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYEYCSKSRIEPKLDVRQTGPKNRQRFLCEVRVDQNNYIGVGNSTNKKDAEKNACRD 63


>gi|126304888|ref|XP_001373897.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 495

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 55/181 (30%), Gaps = 4/181 (2%)

Query: 47  GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
           G + L  ++   +            +      +  E       +   A+          +
Sbjct: 256 GLQPLEKIMQEYIKYAVRYDNHYTNTKYCLCQMLREQLETPQGKKLHAAQSAQEICEAFE 315

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
           + SF   I A++  +   A   +   E      D    + A+K  K +   +   +    
Sbjct: 316 LGSFYEKITAEL--AAKGATLQNKAQEEDDQAGDTDVIRMAVKFDKRQYPPQITPKMCLL 373

Query: 167 AKFGVTPEYKVTFRS-GPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224
                    +  + +     D  F  VV +S         D SK+ AEQ AA   L+  G
Sbjct: 374 EWCRKEKLAQPVYETIQRPVDRLFCSVVTVSERKYRSALWDKSKKLAEQAAAIVCLRSLG 433

Query: 225 I 225
           +
Sbjct: 434 L 434


>gi|228470482|ref|ZP_04055355.1| ribonuclease III [Porphyromonas uenonis 60-3]
 gi|228307829|gb|EEK16773.1| ribonuclease III [Porphyromonas uenonis 60-3]
          Length = 41

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           I G    +G   SK+ A+Q AA + L+   
Sbjct: 1   IDGKPVGRGAGSSKKRAQQEAARDTLELLK 30


>gi|195580870|ref|XP_002080257.1| GD10344 [Drosophila simulans]
 gi|194192266|gb|EDX05842.1| GD10344 [Drosophila simulans]
          Length = 1298

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157382894|gb|ABV48882.1| maleless [Drosophila simulans]
          Length = 1298

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157382892|gb|ABV48881.1| maleless [Drosophila simulans]
          Length = 1298

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157382890|gb|ABV48880.1| maleless [Drosophila simulans]
          Length = 1298

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157382888|gb|ABV48879.1| maleless [Drosophila simulans]
          Length = 1298

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157382886|gb|ABV48878.1| maleless [Drosophila simulans]
          Length = 1298

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157382884|gb|ABV48877.1| maleless [Drosophila simulans]
          Length = 1298

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|157382882|gb|ABV48876.1| maleless [Drosophila simulans]
          Length = 1298

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACRD 63


>gi|224047671|ref|XP_002191239.1| PREDICTED: eukaryotic translation initiation factor 2-alpha kinase
           2 [Taeniopygia guttata]
          Length = 561

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           Y+    +GP H P FTVVV+I+G     G   S
Sbjct: 22  YETVDMTGPSHYPEFTVVVKINGQKYGTGTGKS 54



 Score = 36.1 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +G DH P +TV   ISG    +G   +
Sbjct: 123 TGGDHAPTYTVSCTISGYVYGRGAGPT 149


>gi|312080789|ref|XP_003142750.1| hypothetical protein LOAG_07168 [Loa loa]
 gi|307762087|gb|EFO21321.1| hypothetical protein LOAG_07168 [Loa loa]
          Length = 397

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 81/231 (35%), Gaps = 26/231 (11%)

Query: 12  RIGYAFANRSLLEKALTHSSI-------------------SHSYQESYERLEFLGDRILG 52
           RIG    ++++L +ALT +S                    S+  +E  E+L  LG  +L 
Sbjct: 69  RIGAPETDKNVLIQALTDNSFYQRADIAEESANAQPSKQESYEMKEHNEQLIQLGSELLW 128

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
                 L      A E  +S     L+S E  + +A  L + + IR +            
Sbjct: 129 KSTCAYLRYGLPHAPEELISSLALKLISDEQIATLATYLGINNLIRTAEFP------PSN 182

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
           +   +  ++LIA L     I +    +        ++      +    L+    +  G+ 
Sbjct: 183 ASLCNAFKALIATLPYQRAIALIRNVIMAQLVDLDIEEVFPLAEPLAVLRFVIFSSTGME 242

Query: 173 PEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            E ++   +G    +P F   +  +     QG   +   A  +AA   L R
Sbjct: 243 VEPRLLRSAGEISAEPIFIAGIYANKRLIGQGPGETISIAVDMAAMNALMR 293


>gi|195027549|ref|XP_001986645.1| GH20409 [Drosophila grimshawi]
 gi|193902645|gb|EDW01512.1| GH20409 [Drosophila grimshawi]
          Length = 1335

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAE 218
              +++     T        +GP H  RF   V +      A G   +K+ AE+ A+ +
Sbjct: 5   SFLFSYCAKNQTEPKFEVRPTGPKHRQRFLCEVRVDLCSYVAVGNSTNKKDAEKNASRD 63


>gi|170031452|ref|XP_001843599.1| ribonuclease 3 [Culex quinquefasciatus]
 gi|167870165|gb|EDS33548.1| ribonuclease 3 [Culex quinquefasciatus]
          Length = 835

 Score = 48.0 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
              LEK I Y F NR  L+ ALTH S   ++  +
Sbjct: 710 LDALEKYIDYTFTNRYTLQLALTHPSYKENFGTN 743


>gi|38229197|ref|NP_938290.1| 34L [Yaba monkey tumor virus]
 gi|38000468|gb|AAR07391.1| 34L [Yaba monkey tumor virus]
          Length = 184

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 35/128 (27%), Gaps = 1/128 (0%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +      + K V S       +           +            +  +   K     +
Sbjct: 50  YKLQKEGVLKMVPSNPPKWFKNCNCEDSE-NNDNKLESRDHVPHHIFKDEIPYKKIISWK 108

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           D         + +            +G  H P FT  V ISG+     +  +K+ A+  A
Sbjct: 109 DKTPCTVINEYCQLTSRDWSIEVTTAGESHCPIFTASVIISGIKFKPEIGNTKKEAKHKA 168

Query: 216 AAEVLKRE 223
           +   ++  
Sbjct: 169 SKITMEEI 176


>gi|208690881|gb|ACI31216.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Gorilla
           gorilla]
          Length = 551

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E   +   GP+    F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165



 Score = 39.9 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I      +G   S
Sbjct: 32  NSGPPHDRRFTFRVIIDEREFPEGEGRS 59


>gi|219520292|gb|AAI43231.1| EIF2AK2 protein [Homo sapiens]
          Length = 546

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E   +   GP+    F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165



 Score = 41.8 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I G    +G   S
Sbjct: 32  NSGPPHDRRFTFQVIIDGREFPEGEGRS 59


>gi|208431829|ref|NP_001129124.1| interferon-induced, double-stranded RNA-activated protein kinase
           isoform b [Homo sapiens]
          Length = 510

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E   +   GP+    F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165



 Score = 41.8 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I G    +G   S
Sbjct: 32  NSGPPHDRRFTFQVIIDGREFPEGEGRS 59


>gi|31747519|gb|AAP57628.1| interferon-inducible double-stranded RNA-dependent protein kinase
           [Homo sapiens]
          Length = 510

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E   +   GP+    F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165



 Score = 41.8 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I G    +G   S
Sbjct: 32  NSGPPHDRRFTFQVIIDGREFPEGEGRS 59


>gi|61364980|gb|AAX42635.1| protein kinase interferon-inducible double stranded RNA dependent
           [synthetic construct]
          Length = 552

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E   +   GP+    F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165



 Score = 41.8 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I G    +G   S
Sbjct: 32  NSGPPHDRRFTFQVIIDGREFPEGEGRS 59


>gi|60824577|gb|AAX36685.1| protein kinase interferon-inducible double stranded RNA dependent
           [synthetic construct]
          Length = 552

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E   +   GP+    F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165



 Score = 41.8 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I G    +G   S
Sbjct: 32  NSGPPHDRRFTFQVIIDGREFPEGEGRS 59


>gi|60812550|gb|AAX36216.1| protein kinase interferon-inducible double stranded RNA dependent
           [synthetic construct]
          Length = 551

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E   +   GP+    F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165



 Score = 41.8 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I G    +G   S
Sbjct: 32  NSGPPHDRRFTFQVIIDGREFPEGEGRS 59


>gi|27371006|gb|AAH40851.1| EIF2AK2 protein [Homo sapiens]
 gi|34784744|gb|AAH57805.1| EIF2AK2 protein [Homo sapiens]
          Length = 513

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E   +   GP+    F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165



 Score = 41.8 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I G    +G   S
Sbjct: 32  NSGPPHDRRFTFQVIIDGREFPEGEGRS 59


>gi|4506103|ref|NP_002750.1| interferon-induced, double-stranded RNA-activated protein kinase
           isoform a [Homo sapiens]
 gi|208431827|ref|NP_001129123.1| interferon-induced, double-stranded RNA-activated protein kinase
           isoform a [Homo sapiens]
 gi|125527|sp|P19525|E2AK2_HUMAN RecName: Full=Interferon-induced, double-stranded RNA-activated
           protein kinase; AltName: Full=Eukaryotic translation
           initiation factor 2-alpha kinase 2; Short=eIF-2A protein
           kinase 2; AltName: Full=Interferon-inducible
           RNA-dependent protein kinase; AltName: Full=P1/eIF-2A
           protein kinase; AltName: Full=Protein kinase
           RNA-activated; Short=PKR; AltName: Full=p68 kinase
 gi|189506|gb|AAA36409.1| p68 kinase [Homo sapiens]
 gi|189782|gb|AAA18253.1| P1/eIF-2a protein kinase [Homo sapiens]
 gi|1537049|gb|AAC50768.1| interferon-inducible RNA-dependent protein kinase [Homo sapiens]
 gi|28372413|gb|AAO38055.1| protein kinase, interferon-inducible double stranded RNA dependent
           [Homo sapiens]
 gi|61354795|gb|AAX41060.1| protein kinase interferon-inducible double stranded RNA dependent
           [synthetic construct]
 gi|62739920|gb|AAH93676.1| Eukaryotic translation initiation factor 2-alpha kinase 2 [Homo
           sapiens]
 gi|62988930|gb|AAY24317.1| unknown [Homo sapiens]
 gi|75517635|gb|AAI01476.1| Eukaryotic translation initiation factor 2-alpha kinase 2 [Homo
           sapiens]
 gi|119620811|gb|EAX00406.1| eukaryotic translation initiation factor 2-alpha kinase 2, isoform
           CRA_a [Homo sapiens]
 gi|119620812|gb|EAX00407.1| eukaryotic translation initiation factor 2-alpha kinase 2, isoform
           CRA_a [Homo sapiens]
 gi|119620813|gb|EAX00408.1| eukaryotic translation initiation factor 2-alpha kinase 2, isoform
           CRA_a [Homo sapiens]
 gi|119620814|gb|EAX00409.1| eukaryotic translation initiation factor 2-alpha kinase 2, isoform
           CRA_a [Homo sapiens]
 gi|158254742|dbj|BAF83344.1| unnamed protein product [Homo sapiens]
 gi|189054047|dbj|BAG36554.1| unnamed protein product [Homo sapiens]
          Length = 551

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E   +   GP+    F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165



 Score = 41.8 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I G    +G   S
Sbjct: 32  NSGPPHDRRFTFQVIIDGREFPEGEGRS 59


>gi|255644888|gb|ACU22944.1| unknown [Glycine max]
          Length = 401

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAA 216
              L +    + G       TFRSG  H P FT  VE++G+    G    +K+ AE+ AA
Sbjct: 88  YKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFTGTVELAGI-MFTGEPAKNKKQAEKNAA 146

Query: 217 AEV---LKRE 223
                 LK+ 
Sbjct: 147 MAAWSSLKQL 156



 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
                     R GPDH PRF   V  +G          + R AE  AA   L   
Sbjct: 14  CFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALNSL 68


>gi|297746261|emb|CBI16317.3| unnamed protein product [Vitis vinifera]
          Length = 280

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L +    + G       TFRSG  H P FT  VE++G+        +K+ AE+ AA 
Sbjct: 88  YKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGTVELAGITFTGEPAKNKKQAEKNAAM 147

Query: 218 EV---LKRE 223
                LK+ 
Sbjct: 148 AAWSSLKQL 156



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
                     R GPDH PRF   V  +G          + R AE  AA   L   
Sbjct: 14  CFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSAAEVALNSL 68


>gi|225435325|ref|XP_002285171.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 413

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L +    + G       TFRSG  H P FT  VE++G+        +K+ AE+ AA 
Sbjct: 88  YKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGTVELAGITFTGEPAKNKKQAEKNAAM 147

Query: 218 EV---LKRE 223
                LK+ 
Sbjct: 148 AAWSSLKQL 156



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
                     R GPDH PRF   V  +G          + R AE  AA   L   
Sbjct: 14  CFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSAAEVALNSL 68


>gi|147853140|emb|CAN80689.1| hypothetical protein VITISV_005501 [Vitis vinifera]
          Length = 403

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              L +    + G       TFRSG  H P FT  VE++G+        +K+ AE+ AA 
Sbjct: 88  YKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGTVELAGITFTGEPAKNKKQAEKNAAM 147

Query: 218 EV---LKRE 223
                LK+ 
Sbjct: 148 AAWSSLKQL 156



 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
                     R GPDH PRF   V  +G          + R AE  AA   L   
Sbjct: 14  CFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSAAEVALNSL 68


>gi|47220991|emb|CAF98220.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 363

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            +T        +     +YK+  ++GP H P FT+ VE+ G    +    SKR A+   A
Sbjct: 301 PQTMNALMRLNQLKPGLQYKLVSQTGPVHVPVFTMSVEVDGTVF-EASGPSKRTAKLHVA 359


>gi|327283189|ref|XP_003226324.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 1
           [Anolis carolinensis]
          Length = 773

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 542 FGASVIIDGVTYGAGTASSKKLAKNKAARATLEIL 576


>gi|326929530|ref|XP_003210916.1| PREDICTED: microprocessor complex subunit DGCR8-like [Meleagris
           gallopavo]
          Length = 709

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 478 FGASVIIDGVTYGAGTASSKKLAKNKAARATLEIL 512


>gi|50756249|ref|XP_415079.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8
           [Gallus gallus]
          Length = 775

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V I G+    G   SK+ A+  AA   L+  
Sbjct: 544 FGASVIIDGVTYGAGTASSKKLAKNKAARATLEIL 578


>gi|91084595|ref|XP_974201.1| PREDICTED: similar to 39S ribosomal protein L44 [Tribolium
           castaneum]
 gi|270008900|gb|EFA05348.1| hypothetical protein TcasGA2_TC015512 [Tribolium castaneum]
          Length = 294

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 59/226 (26%), Gaps = 21/226 (9%)

Query: 11  KRIGYAFANRSLLEKALTHSSIS-HSYQESYER-LEF-----------LGDRILGLLIST 57
           KR+   F +R +L++ALTH S       ++ E+ LEF            G  ++   +  
Sbjct: 73  KRLREEF-DRKVLKQALTHRSYVTREEDKAKEKGLEFETIECNHQLIKQGGALISQCVRN 131

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L        +  +      L + +  + V   L L   ++ +    ++     T     
Sbjct: 132 EL---GGKYPKDVVEALHGHLTTVDMLAHVGLHLGLKDIVQTAEFPVENETLADTFKAVV 188

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
               +                     K                                 
Sbjct: 189 AALEVSQGQERVQLFVKDFLLSQLNGKDVYDVWAPDSPLDYLRSLLPKQEIESRLCNKSA 248

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 +    + V +  +      G   S   A+  AA + ++R 
Sbjct: 249 VNTILAN----YQVGLYCNKKLLGLGWGESVEIAKDTAALDAIQRL 290


>gi|116283356|gb|AAH22314.1| EIF2AK2 protein [Homo sapiens]
          Length = 363

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E   +   GP+    F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165



 Score = 41.8 bits (96), Expect = 0.064,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I G    +G   S
Sbjct: 32  NSGPPHDRRFTFQVIIDGREFPEGEGRS 59


>gi|159162913|pdb|1QU6|A Chain A, Structure Of The Double-Stranded Rna-Binding Domain Of The
           Protein Kinase Pkr Reveals The Molecular Basis Of Its
           Dsrna-Mediated Activation
          Length = 179

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E   +   GP+    F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 121 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 170



 Score = 41.8 bits (96), Expect = 0.064,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I G    +G   S
Sbjct: 37  NSGPPHDRRFTFQVIIDGREFPEGEGRS 64


>gi|255713568|ref|XP_002553066.1| KLTH0D08140p [Lachancea thermotolerans]
 gi|238934446|emb|CAR22628.1| KLTH0D08140p [Lachancea thermotolerans]
          Length = 374

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 27/102 (26%), Gaps = 1/102 (0%)

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
                  D              ++  +           EL      +    P  K+   S
Sbjct: 252 WAYTHETDPTFAFRFIDDHILSRKLDVTRIFQFEQPARELAVLCRRENLSPPVSKLLAES 311

Query: 182 GP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           G     P F V V        +G   S + A+  AA + L +
Sbjct: 312 GRLSKAPVFIVGVFSGAEKLGEGFGSSLKEAKARAATDALMK 353


>gi|224122146|ref|XP_002330552.1| hypothetical protein POPTRDRAFT_270173 [Populus trichocarpa]
 gi|222872110|gb|EEF09241.1| hypothetical protein POPTRDRAFT_270173 [Populus trichocarpa]
          Length = 916

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 18/42 (42%)

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           P   P F   +E+        +   K+ AEQ AA   LKR G
Sbjct: 36  PQKAPLFRCQLELPEFTVVSDICRKKKDAEQSAADLALKRLG 77


>gi|3650397|emb|CAA77038.1| maleless protein [Sciara ocellaris]
          Length = 1252

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 158 KTELQEWAHAKFGVTPEYKVTF--RSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
            ++++ + H+    T          +GP H  RF   + ++G     G   S  K+ AE+
Sbjct: 1   MSDIKSFFHSWCNKTKVEPQFESRPTGPKHRQRFLCELRVAGFNY-VGAGNSTVKKDAEK 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64


>gi|50511729|gb|AAT77417.1| dsRNA-binding protein LH2 [Brassica oleracea var. capitata]
          Length = 278

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221
           +    K+ +      T + GP H   F   V + G+         +++AAEQ AA   L+
Sbjct: 21  QEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQSAAEVALQ 80

Query: 222 RE 223
             
Sbjct: 81  EL 82



 Score = 44.1 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 25/72 (34%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                 K  LQE+A       P Y+          P+FT  VEI G+        +KR A
Sbjct: 97  HEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKREA 156

Query: 212 EQVAAAEVLKRE 223
           E  A    L   
Sbjct: 157 EISAGRTALIAI 168


>gi|50511733|gb|AAT77419.1| dsRNA-binding protein LH2-o [Brassica napus]
          Length = 277

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221
           +    K+ +      T + GP H   F   V + G+         +++AAEQ AA   L+
Sbjct: 21  QEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQSAAEVALQ 80

Query: 222 RE 223
             
Sbjct: 81  EL 82



 Score = 44.1 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 25/72 (34%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                 K  LQE+A       P Y+          P+FT  VEI G+        +KR A
Sbjct: 97  HEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKREA 156

Query: 212 EQVAAAEVLKRE 223
           E  A    L   
Sbjct: 157 EISAGRTALIAI 168


>gi|9967526|emb|CAC05659.1| RBP2 protein [Brassica oleracea var. capitata]
          Length = 283

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221
           +    K+ +      T + GP H   F   V + G+         +++AAEQ AA   L+
Sbjct: 21  QEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQSAAEVALQ 80

Query: 222 RE 223
             
Sbjct: 81  EL 82



 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 25/72 (34%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                 K  LQE+A       P Y+          P+FT  VEI G+        +K+ A
Sbjct: 97  HEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKKEA 156

Query: 212 EQVAAAEVLKRE 223
           E  A    L   
Sbjct: 157 EISAGRTALIAI 168


>gi|195444872|ref|XP_002070068.1| GK11851 [Drosophila willistoni]
 gi|194166153|gb|EDW81054.1| GK11851 [Drosophila willistoni]
          Length = 321

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 78/234 (33%), Gaps = 19/234 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRI 50
                KR+   F    +L++A T  S +H  +E                   L   G  +
Sbjct: 67  LFAFGKRLSENFE-LPVLQQAFTDPSYAHKEEERQRKFGIEEEDLKIAHNAHLAEKGGHL 125

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
               +   L        +  L    N L+S ET + V+R L       + S         
Sbjct: 126 ATAYVEAYLKQSLPKVPKEGLEALANYLLSTETLANVSRHLGSIE--LIYSSEYPPSDKI 183

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
           + +    V+ +L  +  ++        F+     Q+ L       +    L+E    +  
Sbjct: 184 LANSLKAVIGALSDSSGVERAFTFVRDFICTQLNQKDLLEIWTPVEPFKLLKEACQQRQW 243

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             PE ++    G +     + V +  +     +G   + + A+++AA + L++ 
Sbjct: 244 SEPEPRLQGDCGKNTVLAAYQVGIYSNRQMLGKGFGETVQTAKEMAAIDALQKL 297


>gi|41058336|gb|AAR99160.1| dsRNA-binding protein [Solanum lycopersicum]
          Length = 318

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           FT  V++ G+        +K+ AE  AA   L
Sbjct: 18  FTCTVDVGGMKYIGAAARTKKEAEIKAARTAL 49


>gi|302826423|ref|XP_002994689.1| hypothetical protein SELMODRAFT_432592 [Selaginella moellendorffii]
 gi|300137140|gb|EFJ04244.1| hypothetical protein SELMODRAFT_432592 [Selaginella moellendorffii]
          Length = 243

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-----Q 202
           +++ K     +  L +    +    P+Y++   SGP H  RFT  V ++          +
Sbjct: 150 MENDKANAFTRQTLNDICLQRQWPMPQYRLLSESGPAHAKRFTYTVRVNTRERGWTDECE 209

Query: 203 GMD-CSKRAAEQVAAAEVLKREGIW 226
           G    S + A+  AA  +L+    W
Sbjct: 210 GQAMPSMKKAKDSAALVLLEVLKQW 234


>gi|328722856|ref|XP_001948677.2| PREDICTED: microprocessor complex subunit DGCR8-like [Acyrthosiphon
           pisum]
          Length = 472

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 1/92 (1%)

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
            E                +      +   +      +   T              P +  
Sbjct: 205 QEPDVKSDCNTSNPEDQWTINLNGKSYVSILHEYIQRVLKTQPSYEFKELENARYP-YLA 263

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            V + G+    G+  SK+ A+  AA   L+  
Sbjct: 264 TVILDGMQYGIGIGSSKKQAKLDAARATLEIL 295


>gi|147794041|emb|CAN60109.1| hypothetical protein VITISV_044329 [Vitis vinifera]
          Length = 858

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            V  +G     GM  +++ A+Q AA   L   
Sbjct: 673 QVLFTGEKIGVGMGKTRKDAQQQAAENALHSL 704


>gi|328352939|emb|CCA39337.1| Ribonuclease 3 [Pichia pastoris CBS 7435]
          Length = 196

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 14 GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           Y+  +  LL + LTH S +H  +   E+L  +G ++L L  S  + +    + 
Sbjct: 46 KYSIPDNELLLQILTHKSFAHGLKPYNEKLSVIGFQLLKLQSSVHVISKPSDSP 99


>gi|254571879|ref|XP_002493049.1| Mitochondrial ribosomal protein of the large subunit [Pichia
           pastoris GS115]
 gi|238032847|emb|CAY70870.1| Mitochondrial ribosomal protein of the large subunit [Pichia
           pastoris GS115]
          Length = 208

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            Y+  +  LL + LTH S +H  +   E+L  +G ++L L  S  + +    + 
Sbjct: 58  KYSIPDNELLLQILTHKSFAHGLKPYNEKLSVIGFQLLKLQSSVHVISKPSDSP 111


>gi|225470352|ref|XP_002267987.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 935

 Score = 47.6 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +F++ V  +G    +G   ++R A+  AA   L
Sbjct: 720 QFSIEVWFAGEKIGEGTGKTRREAQCQAAEASL 752



 Score = 39.5 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             VEI G    +G   +   A+  AA + L
Sbjct: 853 AQVEIDGQVLGKGTGSTWDDAKMQAAEKAL 882


>gi|109287979|ref|YP_654673.1| hypothetical protein MIV101R [Invertebrate iridescent virus 3]
 gi|123868010|sp|Q196V9|RNC_IIV3 RecName: Full=Putative ribonuclease 3
 gi|106073602|gb|ABF82131.1| hypothetical protein MIV101R [Aedes taeniorhynchus iridescent
           virus]
          Length = 333

 Score = 47.2 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 70/221 (31%), Gaps = 27/221 (12%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD-----SAKEGELSVRFN 76
               A T SS +     +YE  E +GD  +G  I    +  F            ++    
Sbjct: 99  YFNMAFTSSSANELN--NYELFEQMGDSTIGKFIVWSSYEKFPQLRGKPEAVEIVARMKI 156

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +L S +  SQ+A +L + +FI  + + R         +  DV E+LI             
Sbjct: 157 NLGSKDNLSQIAEDLGMWTFISATEEARH---RLKKKLLEDVFEALIGVTEYIIYEFTDT 213

Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD------------ 184
            +       + + S   +      L+   +         K  F    D            
Sbjct: 214 NYSQPGLAYQLVYSLLLKLFDPYILKIDYNTLVDSKNRLKGVFDQYKDKLGLQPVYQSER 273

Query: 185 ---HDP-RFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220
              +D   F   V   +G    +G    K+ AE+ A+   +
Sbjct: 274 IVKNDKNVFLSKVYDGNGNFLGEGTAPLKKEAEKKASEVAI 314


>gi|56418259|gb|AAV91073.1| RNase III [Grouper iridovirus]
          Length = 375

 Score = 47.2 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 55/214 (25%), Gaps = 18/214 (8%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             R L  K  T  S+      +YE LE +GD + G        N F      E       
Sbjct: 23  RRRDLWAKVFTPKSV--DPVNNYEALEIVGDGLAGCFFPIYFINRFPQLNSAEGVKLVAR 80

Query: 78  LVSAETCSQVAREL-DLASFIRVSSDLRKDVCSFMTSIQ--ADVVESLIAALYLDGGIEV 134
           L       +    +     F +        V +  +      DV E+ + A+        
Sbjct: 81  LKINYASRKSFAAIAGSLGFWQHVKKPTDTVITPTSKEILLEDVFEAFLGAISTAVDHHF 140

Query: 135 AGTF--------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
                         K    +   S  +      + +         +    + +  G +  
Sbjct: 141 GIPALGVAVVYDFLKAVFDKIDISLNYVDLFDAKTRLKELIDVKKSELGDLRYVHGNNIT 200

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             F     +            K+  E+ AAA  L
Sbjct: 201 QIF-----LGERLVGSATGPIKKDREKDAAARAL 229


>gi|208690907|gb|ACI31229.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Symphalangus syndactylus]
          Length = 551

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 15/43 (34%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            G      F    ++     +     +K+ A+Q+AA     + 
Sbjct: 123 WGVHGPKGFHYKCKMGQKEYSIATGSTKQEAKQLAAKLAYVQI 165



 Score = 38.4 bits (87), Expect = 0.85,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 12/28 (42%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I      +    S
Sbjct: 32  NSGPPHDRRFTFRVIIDEREFPEAEGRS 59


>gi|297798116|ref|XP_002866942.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312778|gb|EFH43201.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 537

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 57/185 (30%), Gaps = 12/185 (6%)

Query: 21  SLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +LL  A  H S   +        + RL FLG  +L L ++      +     G +  R  
Sbjct: 169 TLLYLAFQHPSCDRARARHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVF 228

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +L+      +  +   L + I    D+ K +          V  +L  A+YL  G+    
Sbjct: 229 ALIGKRYLPKWIKAASLQNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCYGMPEVY 288

Query: 137 T--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDPR 188
              F        A +     R    ++   +    G    ++      P       H   
Sbjct: 289 RVLFEVFGMDPDADECQPRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRL 348

Query: 189 FTVVV 193
           F   V
Sbjct: 349 FRACV 353



 Score = 36.1 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 10/108 (9%)

Query: 2   SALRYSTLEKRIGYAFANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLIS 56
              R   + +       N  L   L+    H S       +  +ERLE++G +I  + ++
Sbjct: 383 MNDRIKEITEA-----RNIELGLGLQLCFLHPSKHKFEHPRFCFERLEYVGQKIQDIAMA 437

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
             L      A    L  +   L+  + C +  RE  L +FI  S ++ 
Sbjct: 438 ERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKRLHNFITYSEEVH 485


>gi|255583419|ref|XP_002532469.1| double-stranded RNA binding protein, putative [Ricinus communis]
 gi|223527827|gb|EEF29925.1| double-stranded RNA binding protein, putative [Ricinus communis]
          Length = 289

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQVAAAEVL----KREG 224
             T   G  HDP+F   V + G         S ++ AEQ  A   L    ++  
Sbjct: 32  YQTVNEGYPHDPKFRSTVLVDGEEYTSHNTFSHRKEAEQDVAKLALTSITEKIK 85



 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           P F      +G+     +  +K+ AEQ+AA   
Sbjct: 129 PIFVSSSVFNGVTYNGDIGRTKKEAEQLAARAA 161


>gi|56692721|ref|YP_164179.1| RNase III [Singapore grouper iridovirus]
 gi|42517433|gb|AAS18099.1| RNase III [Singapore grouper iridovirus]
          Length = 375

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 56/214 (26%), Gaps = 18/214 (8%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             R L  K  T  S+      +YE LE +GD + G        N F      E       
Sbjct: 23  RRRDLWAKVFTPKSV--DPVNNYEALEIVGDGLAGCFFPIYFINRFPQLNSAEGVKLVAR 80

Query: 78  LVSAETCSQVAREL-DLASFIRVSSDLRKDVCSFMTSIQ--ADVVESLIAALYLDGGIEV 134
           L       +    +     F +        V +  +      DV E+ + A+ +      
Sbjct: 81  LKINYASRKSFAAIAGSLGFWQHVKKPTDTVITPTSKEILLEDVFEAFLGAISIAVDHHF 140

Query: 135 AGTF--------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
                         K    +   S  +      + +         +    + +  G +  
Sbjct: 141 GIPALGVAVVYDFLKAVFDKIDISLNYVDLFDAKTRLKELIDVKKSELGDLRYVHGNNIT 200

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             F     +            K+  E+ AAA  L
Sbjct: 201 QIF-----LGERLVGSATGPIKKDREKDAAARAL 229


>gi|297805542|ref|XP_002870655.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
 gi|297316491|gb|EFH46914.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
          Length = 394

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
           SG  H P F+  VE++G++       +K+ AE+ AA      LKR 
Sbjct: 111 SGSCHFPGFSCTVELAGMSFTGESAKTKKQAEKNAAIAAWSSLKRM 156



 Score = 42.2 bits (97), Expect = 0.047,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220
                     R GPDH PRF   V  +G          + R AE  AA   L
Sbjct: 14  CFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAAAEVSL 65


>gi|195119908|ref|XP_002004471.1| GI19596 [Drosophila mojavensis]
 gi|193909539|gb|EDW08406.1| GI19596 [Drosophila mojavensis]
          Length = 1351

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
              +++     T         GP H  RF   V +      A G   +K+ AE+ A+ +
Sbjct: 5   SFLFSYCAKNQTEPKFEVRPIGPKHRQRFLCEVRVDQCPYVAVGNSTNKKDAEKNASRD 63


>gi|15078855|ref|NP_149605.1| 142R [Invertebrate iridescent virus 6]
 gi|82013395|sp|O55748|RNC_IIV6 RecName: Full=Putative ribonuclease 3; AltName: Full=Ribonuclease
           III; Short=RNase III
 gi|2738432|gb|AAB94459.1| 142R [Invertebrate iridescent virus 6]
          Length = 292

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 58/226 (25%), Gaps = 27/226 (11%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVRFNSL 78
              A T  S     + +YE  E LGD  +   I   ++  F   +       ++      
Sbjct: 51  YNTAFT--SRGADDKNNYEMFEQLGDVSVNKFIVNYMYKRFPQLRNPNGVDVVAKLKIKY 108

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
            S      ++  LD+  FI  + D R +    +     +        L      ++A   
Sbjct: 109 ASKNQLQMLSESLDMWRFITATYDERTNKKKPLLEDTFESFFGATEWLIDSFIEDIALKQ 168

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG- 197
            +         +           +     K+    + K  F             V+    
Sbjct: 169 GNNNTYVGVGYNIINGILTTLFDRINISLKYENLVDAKTRFNEVIAEQKSIIGDVKYEDE 228

Query: 198 --------------------LAPAQGMDCSKRAAEQVAAAEVLKRE 223
                                    G    KR A++ AA+  L+  
Sbjct: 229 YKNGKHTSKIYRYPPNSNLKELLGIGTGTLKRDAQEQAASRALETL 274


>gi|15235580|ref|NP_195467.1| ribonuclease III family protein [Arabidopsis thaliana]
 gi|4468817|emb|CAB38218.1| putative protein [Arabidopsis thaliana]
 gi|7270733|emb|CAB80416.1| putative protein [Arabidopsis thaliana]
 gi|95147308|gb|ABF57289.1| At4g37510 [Arabidopsis thaliana]
 gi|332661403|gb|AEE86803.1| Ribonuclease III family protein [Arabidopsis thaliana]
          Length = 537

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 57/185 (30%), Gaps = 12/185 (6%)

Query: 21  SLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +LL  A  H S   +        + RL FLG  +L L ++      +     G +  R  
Sbjct: 169 TLLYLAFQHPSCDRARARHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVF 228

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +L+      +  +   L + I    D+ K +          V  +L  A+YL  G+    
Sbjct: 229 ALIGKRYLPKWIKAASLQNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVY 288

Query: 137 T--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDPR 188
              F        A +     R    ++   +    G    ++      P       H   
Sbjct: 289 RVLFEVFGMDPDADECQPRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRL 348

Query: 189 FTVVV 193
           F   V
Sbjct: 349 FRACV 353



 Score = 36.1 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 10/108 (9%)

Query: 2   SALRYSTLEKRIGYAFANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLIS 56
              R   + +       N  L   L+    H S       +  +ERLE++G +I  + ++
Sbjct: 383 MNDRIKEITEA-----RNIELGLGLQLCFLHPSKHKFEHPRFCFERLEYVGQKIQDIAMA 437

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
             L      A    L  +   L+  + C +  RE  L +FI  S ++ 
Sbjct: 438 ERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKRLHNFIIYSEEVH 485


>gi|149457864|ref|XP_001511059.1| PREDICTED: similar to Mitochondrial ribosomal protein L44, partial
           [Ornithorhynchus anatinus]
          Length = 275

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 74/240 (30%), Gaps = 29/240 (12%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFLGD 48
                +R+   F+   LL+ A  +     S +                 +  + L   G 
Sbjct: 12  IQAFSRRLHENFS-LELLKTAFVNRCYIQSEEARRQELGVEEQAAALKLKDNQELSEQGA 70

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
                 ++ L  + F +     ++     L   E    VAR L +      +        
Sbjct: 71  AFSHTYLTQLFEDTFPNMPPEGVAALVGFLTGPEVVCHVARNLAVEELTLSADFP----- 125

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL----KSGKFRRDAKTELQEW 164
               ++      +++ AL    G +    F+  +   +             +    L++ 
Sbjct: 126 -VPQTVLRQTFFAVLGALLKSDGPQRTAVFIRDFLIPQMTGKELFEMWKVVNPMGLLEDE 184

Query: 165 AHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +    PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 185 MTKRNVPIPEPRLTRQSGSSTVLPVYFVGLYCDQKLIAEGPGETVLVAEEEAARVALRKL 244


>gi|187447250|emb|CAO84939.1| ENSANGG00000009686 protein [Anopheles gambiae]
          Length = 197

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            V I+ L    G   SK+ A+  AA E L+  
Sbjct: 1   TVTINELKYGTGYGTSKKQAKSEAARETLEIL 32


>gi|187447226|emb|CAO84927.1| ENSANGG00000009686 protein [Anopheles arabiensis]
 gi|187447228|emb|CAO84928.1| ENSANGG00000009686 protein [Anopheles arabiensis]
 gi|187447230|emb|CAO84929.1| ENSANGG00000009686 protein [Anopheles arabiensis]
 gi|187447232|emb|CAO84930.1| ENSANGG00000009686 protein [Anopheles arabiensis]
 gi|187447234|emb|CAO84931.1| ENSANGG00000009686 protein [Anopheles arabiensis]
 gi|187447236|emb|CAO84932.1| ENSANGG00000009686 protein [Anopheles arabiensis]
 gi|187447238|emb|CAO84933.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447244|emb|CAO84936.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447246|emb|CAO84937.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447248|emb|CAO84938.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447252|emb|CAO84940.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447254|emb|CAO84941.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447256|emb|CAO84942.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447258|emb|CAO84943.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447262|emb|CAO84945.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447266|emb|CAO84947.1| ENSANGG00000009686 protein [Anopheles gambiae]
          Length = 197

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            V I+ L    G   SK+ A+  AA E L+  
Sbjct: 1   TVTINELKYGTGYGTSKKQAKSEAARETLEIL 32


>gi|187447260|emb|CAO84944.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447264|emb|CAO84946.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447268|emb|CAO84948.1| ENSANGG00000009686 protein [Anopheles gambiae]
          Length = 197

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            V I+ L    G   SK+ A+  AA E L+  
Sbjct: 1   TVTINELKYGTGYGTSKKQAKSEAARETLEIL 32


>gi|187447242|emb|CAO84935.1| ENSANGG00000009686 protein [Anopheles gambiae]
          Length = 197

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            V I+ L    G   SK+ A+  AA E L+  
Sbjct: 1   TVTINELKYGTGYGTSKKQAKSEAARETLEIL 32


>gi|312380139|gb|EFR26223.1| hypothetical protein AND_07871 [Anopheles darlingi]
          Length = 328

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 75/236 (31%), Gaps = 28/236 (11%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55
           KR+   F   S+L++A TH S     ++                   L   GD ++   +
Sbjct: 68  KRLQENFE-PSVLQQAFTHQSFIEQEKQKQAAVGIDEPVLGVHDNRELIAQGDSLIQQYV 126

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
              L        +  +     +L S    + ++  L     I  +     D  + + S  
Sbjct: 127 EAFLLKALPRLPQQFVGSIQKALTSEAQLAHISAHLGTKDIILAADFPIDD--TLLASTL 184

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
             +V +L  +   +        F+     QR         DA   L+E+   +    PE 
Sbjct: 185 KAIVAALQRSSGDERCFLFVRDFLCTTLNQRDPFEYLHITDALGTLREYCQERKLAEPEP 244

Query: 176 KVTFRSGPD-----HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE-GI 225
           ++    G +     H     V +         G    +  A Q AA + L++  GI
Sbjct: 245 RLIGTVGKNTLLAAHA----VGIYCDQKLLGTGYGEDQTIASQEAARDCLRKLFGI 296


>gi|189236875|ref|XP_974662.2| PREDICTED: similar to adenosine deaminase [Tribolium castaneum]
          Length = 622

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +          +Y +  ++GPDH P F +  +++      G+  SK  A      +VL+
Sbjct: 178 YQNCLEYVDSMLKYTLVEKTGPDHKPTFKMAAKVNEKTYF-GLGGSKAKARMNVVEQVLE 236

Query: 222 REG 224
              
Sbjct: 237 NLK 239


>gi|33871554|gb|AAH07769.1| EIF2AK2 protein [Homo sapiens]
          Length = 384

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E   +   GP+    F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 165



 Score = 41.8 bits (96), Expect = 0.080,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I G    +G   S
Sbjct: 32  NSGPPHDRRFTFQVIIDGREFPEGEGRS 59


>gi|170585520|ref|XP_001897531.1| WW domain containing protein [Brugia malayi]
 gi|158595078|gb|EDP33653.1| WW domain containing protein [Brugia malayi]
          Length = 936

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 36/133 (27%), Gaps = 8/133 (6%)

Query: 91  LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
           L+     +              S+  + V+ ++ +       E   + +      R   +
Sbjct: 577 LEANLKPQHRGFFLNPQGKTSVSVLHEYVQKVLKSTINYHFSETRNSSMPYGCTARLKMN 636

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
              R    T ++E            +     G   D  F V           G   SK+ 
Sbjct: 637 LNNRVLCATSVKEKLMLLQEKQRREQRLQEHGEQPDADFVV--------LGTGCGNSKKT 688

Query: 211 AEQVAAAEVLKRE 223
           A+  AA   LK  
Sbjct: 689 AKLDAARNALKVL 701


>gi|224125268|ref|XP_002329763.1| predicted protein [Populus trichocarpa]
 gi|222870825|gb|EEF07956.1| predicted protein [Populus trichocarpa]
          Length = 224

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE-GI 225
           +F++    +G    +G   ++R A++ AA   +K+  GI
Sbjct: 20  QFSIEAWFAGEKVGEGTGKTRREAQRQAAEGSIKKLAGI 58



 Score = 40.7 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              VEI G    +G+  +   A+  AA + L
Sbjct: 140 HAQVEIDGQVLGKGIGSTWDEAKMQAAEKAL 170


>gi|156357520|ref|XP_001624265.1| predicted protein [Nematostella vectensis]
 gi|156211031|gb|EDO32165.1| predicted protein [Nematostella vectensis]
          Length = 118

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213
           +   + LQE    K    P++++ F  GP H  +F   V ++G     Q +  +K+ A+ 
Sbjct: 40  KHPISMLQEICARKKWQLPDFQLIFDHGPPHSKQFLFKVAVNGYEYQPQVVSSNKKQAKA 99

Query: 214 VAAAEVLKREG 224
             A   LK  G
Sbjct: 100 QCALYALKAIG 110


>gi|195353782|ref|XP_002043382.1| GM16493 [Drosophila sechellia]
 gi|194127505|gb|EDW49548.1| GM16493 [Drosophila sechellia]
          Length = 1298

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAE 218
              +               ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVQPNTYIGVGNSTNKKDAEKNACRD 63


>gi|282856560|ref|ZP_06265833.1| double-stranded RNA-binding domain protein [Pyramidobacter
           piscolens W5455]
 gi|282585603|gb|EFB90898.1| double-stranded RNA-binding domain protein [Pyramidobacter
           piscolens W5455]
          Length = 365

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +P F V +++SG     G   SKRAA Q AA ++L+  
Sbjct: 122 NPLFFVELQLSGEPIVNGSGQSKRAAGQAAAWKMLQLL 159



 Score = 41.8 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 8/52 (15%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA------E--QVAAAE 218
           Y++  + GP+H P FT     +G   A+    SK+ A      E  + AA +
Sbjct: 21  YRIVAKEGPEHKPVFTAAAFRNGARVAEAGGPSKKDALKALVREVGKAAARQ 72


>gi|270006306|gb|EFA02754.1| hypothetical protein TcasGA2_TC008487 [Tribolium castaneum]
          Length = 742

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +          +Y +  ++GPDH P F +  +++      G+  SK  A      +VL+
Sbjct: 178 YQNCLEYVDSMLKYTLVEKTGPDHKPTFKMAAKVNEKTYF-GLGGSKAKARMNVVEQVLE 236

Query: 222 REG 224
              
Sbjct: 237 NLK 239



 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            F V + I G +   G+  SK++A++VAA   L
Sbjct: 356 EFKVTITI-GKSLFVGIGPSKKSAKKVAALSAL 387


>gi|147815305|emb|CAN72245.1| hypothetical protein VITISV_028705 [Vitis vinifera]
          Length = 518

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 44/139 (31%), Gaps = 4/139 (2%)

Query: 21  SLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +LL  A  H S   +        + RL FLG  +L L  +      +       +  R  
Sbjct: 171 ALLYLAFQHPSCDRANARHVRSGHSRLWFLGQYVLELAFAEYFLQRYPRESPAPMRERVF 230

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            L+      Q  +   L + +    D+ + +          V  +L  A+YL  G+    
Sbjct: 231 ELIGKRNLPQWIKAASLQNLVFPFDDMDRLIRKEREPPVKSVFWALFGAIYLCYGMPEVY 290

Query: 137 TFVDKYWKQRALKSGKFRR 155
             + + +           +
Sbjct: 291 RVLFEVFGMDPEHEDCQPK 309



 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 18  ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S       +  YERLE++G +I  ++++  L      A    L 
Sbjct: 388 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQ 447

Query: 73  VRFNSLVSAETCSQVARELDLASFIRV 99
            +   L+  + C +  R+  L  FI  
Sbjct: 448 EKHRRLLMNKFCGRYLRDKYLHRFIIY 474


>gi|255722171|ref|XP_002546020.1| predicted protein [Candida tropicalis MYA-3404]
 gi|240136509|gb|EER36062.1| predicted protein [Candida tropicalis MYA-3404]
          Length = 709

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             F   V+I  +    G   +K+ A   AA   L
Sbjct: 659 KLFYATVQIGDVYLGAGYGSTKKEARHKAAMCAL 692


>gi|47225094|emb|CAF98721.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1041

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 48/109 (44%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 920  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 979

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146
              +        S +    A+  E+LI    +     +   ++       
Sbjct: 980  LYAHGPDLCRESDLRHAMANCFEALIGETLMRQEQTLCCFYLTGIHFIH 1028



 Score = 37.6 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L++ IGY F  R LL+ A+TH S   ++  +
Sbjct: 836 LDQLIGYVFTERCLLQLAMTHPSHHLNFGMN 866


>gi|158296133|ref|XP_316626.4| AGAP006599-PA [Anopheles gambiae str. PEST]
 gi|157016367|gb|EAA11305.4| AGAP006599-PA [Anopheles gambiae str. PEST]
          Length = 1309

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV---LKR 222
            +  V          GP H  RF   V I G+     G   +K+ +E+ A+ +    L R
Sbjct: 11  CQKNVCEPAFDVRPLGPKHRQRFLCEVRIPGINYIGVGNSTNKKDSEKNASRDFVNYLVR 70

Query: 223 EG 224
            G
Sbjct: 71  IG 72


>gi|224064274|ref|XP_002192167.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog (S.
           cerevisiae) [Taeniopygia guttata]
          Length = 490

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 39/172 (22%), Gaps = 1/172 (0%)

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           +      +         + ++          +  +   L +                   
Sbjct: 262 VMQDYIKYAVRYDNHYTNTKYCLCQMLREQLETTQGKKLQAAQSTQEICEAFEMGDFYEE 321

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
              + E+   +L      E          K       +      T               
Sbjct: 322 TTAIFEAKKTSLETKMQDEDDQMEDPDVIKMAVRFDKREYPPQITPKMYLLEWCRKEKHP 381

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225
             V        D  F  VV ++     +   D SK+ AEQ AA   L+  G+
Sbjct: 382 QPVYETVQRPLDRLFCSVVTVAEQKYRSTLWDKSKKLAEQAAAIVCLRTLGV 433


>gi|320581623|gb|EFW95843.1| Mitochondrial ribosomal protein of the large subunit [Pichia
           angusta DL-1]
          Length = 355

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 65/251 (25%), Gaps = 38/251 (15%)

Query: 8   TLEKRIGYAFA-NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            L  R+  +    +S L +ALT    ++ Y ++++ +   G  +L    +  L   +   
Sbjct: 76  ALHARLNLSPNFKKSTLVRALTSRMKNNDYVDNHQ-MALFGSSMLSYYTTEYLITTYPRL 134

Query: 67  KEGELSVRFNSLVSAETCS------------------------QVARELDLASFIRVSSD 102
             G L    ++ V                                        + R + +
Sbjct: 135 PIGILKAATDAFVGDYPLHDVAKNVWGIEEDLSTNLEKYLSKEPKLFRFGRLRYDRQAQE 194

Query: 103 LRKDVCSFMTSIQADVVESLIA-----------ALYLDGGIEVAGTFVDKYWKQRALKSG 151
           +   +  +  + +  +  +                  D        +     +   + S 
Sbjct: 195 VEAGITKYSITSETSLSTATAYANSVRAIVAGVFAADDERETKDFIYRHILSRNVDISSM 254

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRA 210
               +    L      K    P  ++   +G     P F V          +G   S + 
Sbjct: 255 FEFEEPGKLLARLLKTKNMELPTIRLISETGRQSSSPTFIVGCFSGDNLLGEGQGTSLKE 314

Query: 211 AEQVAAAEVLK 221
           A   +    LK
Sbjct: 315 ARIRSCVSALK 325


>gi|148907218|gb|ABR16750.1| unknown [Picea sitchensis]
          Length = 388

 Score = 47.2 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQV---AAAEVLKR 222
             T RSGP H P F  +V++ G     G    +K+ AEQ    AA   LK+
Sbjct: 106 YTTTRSGPAHLPVFKCIVDVFGTRF-NGKPAATKKQAEQNTAMAAWSALKQ 155



 Score = 39.9 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEV---LKREG 224
            GPDH PRF   V  +G          + R AE VAA      L + G
Sbjct: 25  KGPDHAPRFRATVNFNGEIFESPNYCSTLRQAELVAAEVAVNTLSKRG 72


>gi|307776250|pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
           The First Dsrbd Of Protein Hyl1
          Length = 103

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221
           +    K+ +        + GP H   F   V + G+         +++AAEQ AA   L+
Sbjct: 24  QEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALR 83

Query: 222 RE 223
             
Sbjct: 84  EL 85


>gi|296863410|pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
           Implications Processing
 gi|296863411|pdb|3ADI|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
           Implications Processing
 gi|296863412|pdb|3ADI|B Chain B, Structure Of Arabidopsis Hyl1 And Its Molecular
           Implications Processing
 gi|296863413|pdb|3ADI|C Chain C, Structure Of Arabidopsis Hyl1 And Its Molecular
           Implications Processing
          Length = 73

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221
           +    K+ +        + GP H   F   V + G+         +++AAEQ AA   L+
Sbjct: 10  QEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALR 69

Query: 222 RE 223
             
Sbjct: 70  EL 71


>gi|18391056|ref|NP_563850.1| HYL1 (HYPONASTIC LEAVES 1); double-stranded RNA binding / miRNA
           binding / protein binding [Arabidopsis thaliana]
 gi|75218980|sp|O04492|DRB1_ARATH RecName: Full=Double-stranded RNA-binding protein 1; AltName:
           Full=Protein HYPONASTIC LEAVES 1; AltName:
           Full=dsRNA-binding protein 1; Short=AtDRB1
 gi|12247457|gb|AAG49890.1|AF276440_1 hyponastic leave 1 [Arabidopsis thaliana]
 gi|2160163|gb|AAB60726.1| F21M12.9 gene product [Arabidopsis thaliana]
 gi|15451102|gb|AAK96822.1| Unknown protein [Arabidopsis thaliana]
 gi|20148393|gb|AAM10087.1| unknown protein [Arabidopsis thaliana]
 gi|332190360|gb|AEE28481.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
          Length = 419

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221
           +    K+ +        + GP H   F   V + G+         +++AAEQ AA   L+
Sbjct: 21  QEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALR 80

Query: 222 RE 223
             
Sbjct: 81  EL 82



 Score = 40.3 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 26/76 (34%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q   +        K  LQE+A       P Y+           +FT  VEI G+      
Sbjct: 90  QCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAA 149

Query: 205 DCSKRAAEQVAAAEVL 220
             +K+ AE  A    L
Sbjct: 150 TRTKKDAEISAGRTAL 165


>gi|116006497|ref|NP_013416.2| Mrpl15p [Saccharomyces cerevisiae S288c]
 gi|3123277|sp|P36523|RM15_YEAST RecName: Full=54S ribosomal protein L15, mitochondrial; AltName:
           Full=YmL15; Flags: Precursor
 gi|2258171|gb|AAB64533.1| Mrpl15p: mitochondrial ribosomal protein YmL15 [Saccharomyces
           cerevisiae]
 gi|285813726|tpg|DAA09622.1| TPA: Mrpl15p [Saccharomyces cerevisiae S288c]
 gi|323303777|gb|EGA57561.1| Mrpl15p [Saccharomyces cerevisiae FostersB]
 gi|323307957|gb|EGA61214.1| Mrpl15p [Saccharomyces cerevisiae FostersO]
          Length = 253

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 14/135 (10%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           + G   +N  L+ + LTH S +H  +   E+L  LG + L L        +   A+  E 
Sbjct: 77  KYGINLSN-ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 135

Query: 72  SVRFNSL-------------VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
                                +          LD   F ++   ++    +  T+I A V
Sbjct: 136 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLDPFIFWKMRDPIKDGHINGETTIFASV 195

Query: 119 VESLIAALYLDGGIE 133
           + + I A+    G E
Sbjct: 196 LNAFIGAILSTNGSE 210


>gi|9759153|dbj|BAB09709.1| unnamed protein product [Arabidopsis thaliana]
          Length = 384

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKR 222
           SG  H P F+  VE++G+        +K+ AE+ AA      LK+
Sbjct: 111 SGSCHFPGFSCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKK 155



 Score = 42.6 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220
                     R GPDH PRF   V  +G          + R AE  AA   L
Sbjct: 14  CFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAAAEVSL 65


>gi|149431138|ref|XP_001511149.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 197

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP- 200
              +   +    +   K  L EW H +    P Y+   R     +  F  VV ++     
Sbjct: 83  MAVKFDKREYPAQITPKMCLLEWCHKEKLPQPVYETVQR---PSNGLFCSVVTVAEQKYK 139

Query: 201 AQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +   D SK+ AEQ AA   LK  G+ T
Sbjct: 140 SSMWDKSKKLAEQAAAIVCLKALGLPT 166


>gi|242760076|ref|XP_002339915.1| conserved hypothetical protein [Talaromyces stipitatus ATCC
          10500]
 gi|218723111|gb|EED22528.1| conserved hypothetical protein [Talaromyces stipitatus ATCC
          10500]
          Length = 129

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 4  LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
          +  +++E  IGY F +R LL KAL        +Q   +RL  LGD+++ L++    +   
Sbjct: 1  MDCNSVEGIIGYTFNDRELLAKAL--------HQTQNKRLALLGDKVVALVLIDSWYQTG 52

Query: 64 DSAK 67
           S  
Sbjct: 53 TSCS 56


>gi|58264874|ref|XP_569593.1| hypothetical protein CNC03670 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57225825|gb|AAW42286.1| hypothetical protein CNC03670 [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 875

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR---- 74
           +  L  +ALT  S  +    +YERLE LGD +L   I+  ++ H   A   E S++    
Sbjct: 448 HPELALQALTAPSSQNVTPWTYERLEILGDTLLKFFITIHVYLHGGGANSREDSLKVWQD 507

Query: 75  FNSLVSAETCSQVARELDLASF 96
            + LVS  T +  A +L L  F
Sbjct: 508 RHKLVSNRTLTANAIKLGLVEF 529


>gi|134109497|ref|XP_776863.1| hypothetical protein CNBC3540 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259543|gb|EAL22216.1| hypothetical protein CNBC3540 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 875

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR---- 74
           +  L  +ALT  S  +    +YERLE LGD +L   I+  ++ H   A   E S++    
Sbjct: 448 HPELALQALTAPSSQNVTPWTYERLEILGDTLLKFFITIHVYLHGGGANSREDSLKVWQD 507

Query: 75  FNSLVSAETCSQVARELDLASF 96
            + LVS  T +  A +L L  F
Sbjct: 508 RHKLVSNRTLTANAIKLGLVEF 529


>gi|196007066|ref|XP_002113399.1| predicted protein [Trichoplax adhaerens]
 gi|190583803|gb|EDV23873.1| predicted protein [Trichoplax adhaerens]
          Length = 1440

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 58/190 (30%), Gaps = 16/190 (8%)

Query: 8   TLEKRIGYAFANRSLLEKAL-----THSSISHSYQESYER-LEFLGDRILGLLIST--LL 59
            ++K + Y F + SLL  AL       +SI    +   ++ LE +GD  L  ++      
Sbjct: 28  EIQKNLKYDFKDSSLLLTALGKDNKLDTSIGLPGRYGNQQILEMIGDAWLRFVVLYKLYE 87

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                       +     LVS +T      +       R+  +      +      A+  
Sbjct: 88  MKEHTDGSAKSFNDATKWLVSNDTVLPEIGK-------RLGLEKCIRNITDKKKYLANYT 140

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+++ A  +D         V        + + K   +       +   +     +     
Sbjct: 141 EAILGAAVIDDRNLHRSFQVVDRLWSPYINTYKNNDNNCDARPLFVSQEITNQNQANDEK 200

Query: 180 RSGPD-HDPR 188
             G D H P 
Sbjct: 201 THGNDFHLPE 210


>gi|156554948|ref|XP_001602039.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 350

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQ 213
           +   + L E+   +    P Y+     GPD    +  +V ++G+     +   +K+ A+ 
Sbjct: 277 KHPVSLLGEYCSKRKYGAPRYQEFCECGPDKKKSYLFMVVVNGITYKPAVANPNKKLAKV 336

Query: 214 VAAAEVLKREGIW 226
            AA   L+  G+ 
Sbjct: 337 EAAQLCLQSLGVL 349


>gi|187447240|emb|CAO84934.1| ENSANGG00000009686 protein [Anopheles gambiae]
          Length = 197

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            V I+ L    G   SK+ A+  AA E L+  
Sbjct: 1   TVTINELKYGTGYGTSKKQAKSEAARETLEIL 32


>gi|322786736|gb|EFZ13103.1| hypothetical protein SINV_10097 [Solenopsis invicta]
          Length = 159

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           D +F   V    L  A G+  SK+ A+Q AA  +L
Sbjct: 35  DRQFLCNVSCKELN-ASGIGISKKEAKQNAAKNML 68


>gi|19072786|gb|AAL84638.1|AF484524_1 endoribonuclease Dicer [Mus musculus x Mus spretus]
          Length = 1539

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1277 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYHDAHEGRLSYMRSKK 1334

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1335 VSNCNLYRLGKKKG 1348


>gi|50548505|ref|XP_501722.1| YALI0C11429p [Yarrowia lipolytica]
 gi|49647589|emb|CAG82032.1| YALI0C11429p [Yarrowia lipolytica]
          Length = 467

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 20/103 (19%)

Query: 16  AFANRSLLEKALTHSS--------------------ISHSYQESYERLEFLGDRILGLLI 55
              +  L ++  TH S                       +   SYERLEF+GD I+  ++
Sbjct: 146 EIKDGMLFKRVFTHRSMLLGDTGTASEVHKTATKAGYDQTGNFSYERLEFVGDSIVNNIL 205

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
           + ++++ F    +  LS     +++     + A      S +R
Sbjct: 206 TKIIYDVFPGDDQSHLSFLRGQVIANIVLCRWAAIYGFPSKLR 248


>gi|307197029|gb|EFN78401.1| 39S ribosomal protein L44, mitochondrial [Harpegnathos saltator]
          Length = 284

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 73/234 (31%), Gaps = 19/234 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI---------------SHSYQESYERLEFLGDRI 50
                KR+   F +   LE+A TH                       +        G+++
Sbjct: 35  IYAFNKRLSENF-DIEKLEQAFTHKVYIFKEEQKQKEIGIEDPKLNIKDNTTFIIKGEKL 93

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           +  ++ + L      A E  +    + L+S E  +  +  +       + ++        
Sbjct: 94  VSEIVQSYLTEALSLAPEDVIISLHDYLLSEEILASASLHIGAKD--IILTEEHPVAQKT 151

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
           +      +  +L  ++ ++   +    F+     ++ L            L    H +  
Sbjct: 152 LADTFFALTAALAESVDVNHAGKFIRDFLIVLLAEKDLMEIWNPSQPCEILDNVLHKQDR 211

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              E ++   +G +     + + +  +      G   + + A+ VAA  VL R 
Sbjct: 212 SPAEPRLIGHAGQNTLLASYHIGLYSNKEFLGSGFGQTIQEAKDVAAMNVLSRM 265


>gi|291392312|ref|XP_002712549.1| PREDICTED: mitochondrial ribosomal protein L44 [Oryctolagus
           cuniculus]
          Length = 332

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 71/234 (30%), Gaps = 29/234 (12%)

Query: 12  RIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGDRILGLL 54
           R+   F+   LL+ A  +     S                   +  + L   G       
Sbjct: 78  RLQETFS-LDLLKTAFVNKCYIKSEEAKRQKLGIEKEAVRLNIKDNQELSTQGSSFSRTC 136

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           ++  L + +       +    + L S E    VAR L +      +            S+
Sbjct: 137 LTQFLEDEYPDLPAEGIESLVDFLTSEEVVCHVARNLAVEQLTLSADFP------VPPSV 190

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL----KSGKFRRDAKTELQEWAHAKFG 170
                 ++I AL    G E    F+  +   +             +    L E    +  
Sbjct: 191 LQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWKIINPMGLLVEELKKRKI 250

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 251 SAPESRLTRQSGSTTALPLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304


>gi|224129272|ref|XP_002328933.1| predicted protein [Populus trichocarpa]
 gi|222839363|gb|EEE77700.1| predicted protein [Populus trichocarpa]
          Length = 133

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220
                     R GPDH PRF   V  +G          + R AE  AA   L
Sbjct: 14  CFNLPAYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVAL 65


>gi|34978642|gb|AAQ83572.1| VP11 [Liao ning virus]
          Length = 198

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y+     GP H+  FT+V         +G+  SK+ A  +AA +++
Sbjct: 28  YEDVGFEGPPHNRSFTIVATFRDKKY-EGIGPSKKVARSIAANKII 72


>gi|290562111|gb|ADD38452.1| Double-stranded RNA-specific editase 1 [Lepeophtheirus salmonis]
          Length = 296

 Score = 46.8 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE-GI 225
            F + V + G+   +G   +K+ +++  A   LK+  GI
Sbjct: 252 IFVMSVTVDGVTF-EGEGKNKKDSKRNCALAALKKIYGI 289



 Score = 39.1 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           FT    + G    +    SK+ A+ + A   ++  
Sbjct: 91  FTAQCTVEGRDY-EASGPSKQMAKNLCAESAIQAL 124


>gi|300121933|emb|CBK22507.2| unnamed protein product [Blastocystis hominis]
          Length = 103

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           H+ RF V  ++  +   +G   S + A   AA + L+  G+
Sbjct: 57  HENRFHVRAKVDDVLVGEGTGSSVKIATSYAAWKGLEALGV 97


>gi|313233857|emb|CBY10026.1| unnamed protein product [Oikopleura dioica]
          Length = 500

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P FT+V +I  ++  +    SK+ A+  AA+ +LK  
Sbjct: 252 PPFTIVCQIDDMS-TEATGNSKKEAKHRAASSMLKNL 287



 Score = 39.9 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLA 199
                +  K+ +  R   +ELQE+   +    P Y      G  +H   FT    I  L 
Sbjct: 394 HQPASQPDKNHEVNRHPVSELQEYLQQRHISAPAYFFIPHDGGYEHLKEFTCKCTIDELN 453

Query: 200 P-AQGMDCSKRAAEQVAAAEVLK---REGIW 226
              +    +++ A + AA ++LK   +  I 
Sbjct: 454 LQVKERRKNQKIARKAAATQMLKDLLKIKII 484


>gi|311246431|ref|XP_003122205.1| PREDICTED: spermatid perinuclear RNA-binding protein-like [Sus
           scrofa]
          Length = 619

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVA 444



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 477 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 505


>gi|73968133|ref|XP_863822.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 7 [Canis familiaris]
          Length = 619

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
               +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A
Sbjct: 393 MRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVA 444



 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 477 ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 505


>gi|47210542|emb|CAF93934.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1479

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1348 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1405

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1406 VSNCNLYRLGKKKG 1419


>gi|91084515|ref|XP_967225.1| PREDICTED: similar to DISCO Interacting Protein 1 CG17686-PC
           isoform 1 [Tribolium castaneum]
 gi|270012651|gb|EFA09099.1| hypothetical protein TcasGA2_TC015220 [Tribolium castaneum]
          Length = 359

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 35/121 (28%), Gaps = 2/121 (1%)

Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165
           D    +                                  +   S K   +A        
Sbjct: 229 DGTPTLPWQHVASFALYKLLNAWGEDPNQTRGDAGPGQIPQNRPSRKMPENAAHMNPLML 288

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR-EG 224
             +     +++   R+G   +  FT    + G +   G   +K++A+++AA  V  +  G
Sbjct: 289 LNQMMPHAQFEELGRTGNPPNVIFTFKCTVGGQSF-NGTGPNKKSAKKMAAFAVCHKMLG 347

Query: 225 I 225
           I
Sbjct: 348 I 348



 Score = 42.6 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +  Y VT    P    ++T  V + G+    G   SK  A+ +AA   LK
Sbjct: 154 KSATYTVTDVPQPPEMNQYTATVLVDGVTH-IGHGRSKMEAKSMAAENALK 203


>gi|121711409|ref|XP_001273320.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
 gi|119401471|gb|EAW11894.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
          Length = 421

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +E+  GY F +  LL +A+T +    +  +    L  +G   + L      + +    
Sbjct: 5   DKIEQISGYRFRDERLLHEAMTAAGADENNHDGNRPLAQVGKSFVELCSVKFGYLNRTE- 63

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
                       ++ + C+ +A+E+ +   +      +     
Sbjct: 64  -----RALKIQNINNDRCALIAKEIGIDQHLTYCPRHQGYSKK 101


>gi|145523303|ref|XP_001447490.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415001|emb|CAK80093.1| unnamed protein product [Paramecium tetraurelia]
          Length = 419

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 71/229 (31%), Gaps = 19/229 (8%)

Query: 15  YAFANRSLLEKALT---H------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           + F N ++L +ALT   H         +     + E    +G  IL    S  L      
Sbjct: 94  FRFQNTNILAQALTNKIHELEYQSKKGTKYPFGNNEEFIVIGQMILEFYFSDYLMQRGYP 153

Query: 66  AKEGELSV------RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
            K+  +            L++ +  +++A + ++ +F+++ +       S + +     +
Sbjct: 154 KKDSSIKKPSDLVLLRQRLLNDKNLAEIAIQYNVHNFVQIGNQTALKKNSKVLAETLKAM 213

Query: 120 ESLIAA---LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            +         L+   E+  + + +   +         +                     
Sbjct: 214 VAAQYYDSGFDLEHTREILQSILKELLDKGQNVPIAELKQNPKTSFLEYINNQTDLIPKV 273

Query: 177 VTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                  ++    + + +E+           +KR  EQ+   E LK+  
Sbjct: 274 SVEWKKDENSINVYKIQLELDSYINITKTGANKRQTEQLVYQEALKQIK 322


>gi|195132199|ref|XP_002010531.1| GI14629 [Drosophila mojavensis]
 gi|193908981|gb|EDW07848.1| GI14629 [Drosophila mojavensis]
          Length = 458

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 47/156 (30%), Gaps = 8/156 (5%)

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           + R    +  +T  Q+     L  + R      K+  +            L   L     
Sbjct: 293 TPRGKRFLQCQTLQQICEIWGLGDYCRRKQQELKEHGNG-----GRANVILTECLAKRQK 347

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH--DPRF 189
           +E +    D+Y           R    ++ Q      + +  +      S   H  D  F
Sbjct: 348 LERSEDLSDEYEGVICRNMAFLRSTYPSDTQLPKMVLYVLAGKLGKQAPSYETHQCDKLF 407

Query: 190 TVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224
             +    G   +    + +K+ AEQ AA   L + G
Sbjct: 408 RSICSYDGQRFSSSFWEKNKKQAEQGAALVALLQLG 443


>gi|125526376|gb|EAY74490.1| hypothetical protein OsI_02382 [Oryza sativa Indica Group]
          Length = 256

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 7   STLEKRIG-YAFANRS--LLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLF 60
           + +E+ +G Y+F +    LLE ALTHS         +  ++RLEFLGD  LGL  +T+ +
Sbjct: 22  AEVERALGGYSFRDGGALLLEDALTHSVHPRDEAGGRARHQRLEFLGDAALGLAFATIFY 81

Query: 61  NHFDSAKEGELSVRFNSLVSAE 82
                  +G+L+V  ++ VS +
Sbjct: 82  RDDPGLDQGDLTVLRSANVSTQ 103


>gi|115437482|ref|NP_001043306.1| Os01g0551100 [Oryza sativa Japonica Group]
 gi|75105855|sp|Q5JK90|RTL1_ORYSJ RecName: Full=Ribonuclease 3-like protein 1; AltName:
           Full=Ribonuclease III-like protein 1; Short=RNase
           III-like protein 1
 gi|57900069|dbj|BAD88131.1| unknown protein [Oryza sativa Japonica Group]
 gi|57900480|dbj|BAD87969.1| unknown protein [Oryza sativa Japonica Group]
 gi|113532837|dbj|BAF05220.1| Os01g0551100 [Oryza sativa Japonica Group]
 gi|215695480|dbj|BAG90671.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 256

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 7   STLEKRIG-YAFANRS--LLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLF 60
           + +E+ +G Y+F +    LLE ALTHS         +  ++RLEFLGD  LGL  +T+ +
Sbjct: 22  AEVERALGGYSFRDGGALLLEDALTHSVHPRDEAGGRARHQRLEFLGDAALGLAFATIFY 81

Query: 61  NHFDSAKEGELSVRFNSLVSAE 82
                  +G+L+V  ++ VS +
Sbjct: 82  RDDPGLDQGDLTVLRSANVSTQ 103


>gi|170055796|ref|XP_001863741.1| ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167875616|gb|EDS38999.1| ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 378

 Score = 46.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
             SGP +  RF   V +  +A    G   +K+ AE+ AA +
Sbjct: 201 STSGPKNRQRFLCEVRVPNVAYVGAGNSTNKKDAERNAARD 241


>gi|300123389|emb|CBK24662.2| unnamed protein product [Blastocystis hominis]
          Length = 326

 Score = 46.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 39/158 (24%), Gaps = 1/158 (0%)

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
              E        V               +    ++  R                    ++
Sbjct: 164 PLAEFYPECQHRVMNINTIVEMIIAFKETNDWKTTFERCIPLRKKKVEDETGHSFDYHSI 223

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +    +E    +    ++ +       ++       E     +    +        P + 
Sbjct: 224 HSVKELESISEYRINRFQLKHALHIYCQKHQLDYEFENREIPYEEYEQEVKEQEEKPPYF 283

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             F   V++ G    +G   S+R+A+  AA   L   G
Sbjct: 284 R-FHAKVKVDGKMMGEGKGKSQRSAQGKAAWYALVELG 320


>gi|238575785|ref|XP_002387790.1| hypothetical protein MPER_13270 [Moniliophthora perniciosa FA553]
 gi|215448580|gb|EEB88720.1| hypothetical protein MPER_13270 [Moniliophthora perniciosa FA553]
          Length = 361

 Score = 46.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            + GP HDP +TVV E++G    +G   S + A   AA + 
Sbjct: 311 SKEGPPHDPVWTVVYELNGQTQGKGTGRSMQIATHAAATDA 351


>gi|157134083|ref|XP_001663138.1| hypothetical protein AaeL_AAEL012964 [Aedes aegypti]
 gi|108870604|gb|EAT34829.1| conserved hypothetical protein [Aedes aegypti]
          Length = 360

 Score = 46.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              F+V V + G     G   SK+ A + AA    ++ 
Sbjct: 312 KREFSVGVTVDGQRF-IGKARSKKLARKEAAVAACRQL 348


>gi|193661999|ref|XP_001947403.1| PREDICTED: microprocessor complex subunit DGCR8-like [Acyrthosiphon
           pisum]
          Length = 650

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 27/88 (30%)

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
            T        R  +                + +  +  +    F+   + +  ++  V +
Sbjct: 359 QTEDHDKRCNRRREWIMNPNGKSYVSILHEYLQQALKTQPWYEFKELENTETPYSATVVL 418

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           + +    G+  SK+ A+  AA   L   
Sbjct: 419 NDVQYGVGLGNSKKQAKLNAAQATLDIL 446


>gi|322795850|gb|EFZ18529.1| hypothetical protein SINV_15805 [Solenopsis invicta]
          Length = 138

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            R  V V++ G    +G+  + R A+  AA   LK+  
Sbjct: 90  RRVRVTVDVFGKGSFKGIGRNYRIAKCTAAKCALKKLK 127


>gi|118090288|ref|XP_420624.2| PREDICTED: similar to testis nuclear RNA binding protein [Gallus
           gallus]
          Length = 570

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                ++ +  ++K T  +G      F +   + G+    G+  SK+ ++Q AA   L  
Sbjct: 101 HRFAQRYSMQLDFKETGVAGHAISSYFGISAVLDGVYYKTGLGRSKKESKQSAAKLALDE 160

Query: 223 E 223
            
Sbjct: 161 L 161


>gi|328785857|ref|XP_395948.4| PREDICTED: hypothetical protein LOC412491 [Apis mellifera]
          Length = 521

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 1/60 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +     ++      GP  +  + V  E+ G     G   SK  A Q AA   LK  
Sbjct: 267 MVLNEMKPGVQFTFPETQGPMPNSLYLVHAELDGKTY-VGQGLSKPLARQNAAENALKAL 325


>gi|332022056|gb|EGI62381.1| 39S ribosomal protein L44, mitochondrial [Acromyrmex echinatior]
          Length = 314

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 74/232 (31%), Gaps = 21/232 (9%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSI--SHSYQ-------------ESYERLEFLGDRILG 52
              +R+  +F N   LE+A T+ S       +             +    L   G+++  
Sbjct: 68  AFNERLSESF-NMEKLEQAFTNRSYFIQEEQKQKEMGIENPVLDIKDNTELIIKGEKLTS 126

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
            ++   L      A E  +    + L+S E  ++ A  +     I             + 
Sbjct: 127 EIVQAYLVQVLPQASEDVIISLHDYLLSEEILAKAAFHIGTKDIILT----EAIAQKTLA 182

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
                +V +L  ++ ++        F+     ++ L       +    L +    +    
Sbjct: 183 DTFFALVAALAESVDVNHTANFVRDFLIVILAEKDLTEIWKPANPVELLNDILRKQNRSL 242

Query: 173 PEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            E ++  + G +  +  + + +         G   + + A+  AA  VL R 
Sbjct: 243 AEPRLIAQVGENTLEVVYHIALYCDKEFLGSGFGQTIQEAKNTAAINVLSRI 294


>gi|324508716|gb|ADY43677.1| Microprocessor complex subunit DGCR8/PASHA [Ascaris suum]
          Length = 637

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 38/136 (27%), Gaps = 8/136 (5%)

Query: 88  ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147
              ++     +              SI  + V+ ++ +       E   +        R 
Sbjct: 273 VPSMEANLKPQHKGFFLNPQGKTSISILHEYVQKVLKSTINYQFTETRSSSTPYGCSARL 332

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +   R  + T ++E            +   ++G   D  F V           G   S
Sbjct: 333 KMNLNNRVMSATSIKEKLMLLQEKQRREQQLQQNGEPIDSEFVV--------LGSGCGNS 384

Query: 208 KRAAEQVAAAEVLKRE 223
           K+ A+  AA   LK  
Sbjct: 385 KKTAKLDAARSALKVL 400


>gi|115758842|ref|XP_001203807.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8,
           partial [Strongylocentrotus purpuratus]
 gi|115943248|ref|XP_001198796.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8,
           partial [Strongylocentrotus purpuratus]
          Length = 417

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              +      +   T    V   S     P F  +VEI G+   +G   SKR A+  AA 
Sbjct: 174 PVCILHEYAQRVMRTQPQYVFGESRNASAP-FEALVEIKGMKYGRGEATSKRLAKAEAAK 232

Query: 218 EVLKRE 223
           + L   
Sbjct: 233 KTLDIL 238


>gi|307207077|gb|EFN84886.1| tRNA-dihydrouridine synthase 2-like [Harpegnathos saltator]
          Length = 512

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 28/103 (27%), Gaps = 6/103 (5%)

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            +     +                         KT L +W        P Y         
Sbjct: 401 CISQKRKMHDEEDVALMRCAFLRSSYTTDSELPKTRLCKWTKDHHKKMPVYDTRK----- 455

Query: 185 HDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGIW 226
           +D  F  VV + G        + +K+ AEQ AA   L   GI 
Sbjct: 456 NDKLFCSVVTVDGRKYGSSFWEKNKKWAEQGAALVCLYFLGII 498


>gi|147900893|ref|NP_001087171.1| spermatid perinuclear RNA-binding protein [Xenopus laevis]
 gi|82182202|sp|Q6DCD0|STRBP_XENLA RecName: Full=Spermatid perinuclear RNA-binding protein
 gi|50415523|gb|AAH78118.1| Strbp-prov protein [Xenopus laevis]
          Length = 686

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
           K     +         +     +YK+  +SGP H P FT+ V++ G    +    SK+ A
Sbjct: 381 KPIDPNQPMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTH-EASGPSKKTA 439

Query: 212 EQVAAAEVLKREGIWT 227
           +     +VL+  G  T
Sbjct: 440 KLYVTVKVLQAMGYPT 455


>gi|70998456|ref|XP_753950.1| dsRNA-specific ribonuclease III [Aspergillus fumigatus Af293]
 gi|66851586|gb|EAL91912.1| dsRNA-specific ribonuclease III, putative [Aspergillus fumigatus
           Af293]
 gi|159126317|gb|EDP51433.1| dsRNA-specific ribonuclease III, putative [Aspergillus fumigatus
           A1163]
          Length = 142

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 10/98 (10%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E+ +GY F + +++ +A+         +E   RL FLGD+++GL++  + +    S  +
Sbjct: 11  IEEILGYTFQDPTIVYEAV--------SRERNPRLAFLGDKVVGLILLDIWYRTETSCAQ 62

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
           G    R     + +  +  A  L L +F        + 
Sbjct: 63  GYS--RLQDYATNKAMAHQAIRLHLDAFAAPGPSQSQR 98


>gi|299756402|ref|XP_002912199.1| hypothetical protein CC1G_13731 [Coprinopsis cinerea okayama7#130]
 gi|298411660|gb|EFI28705.1| hypothetical protein CC1G_13731 [Coprinopsis cinerea okayama7#130]
          Length = 79

 Score = 46.1 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
              DA + L ++ +               GP HD ++T V +I G    +G    K  A+
Sbjct: 1   MSNDAISRLNQYLNKIGKAASLSWQECNYGPPHDSKWTCVCKIDGEPRGEGTSTHKHTAK 60

Query: 213 QVAAAEVL 220
            +AA + L
Sbjct: 61  NIAAEQAL 68


>gi|303272367|ref|XP_003055545.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463519|gb|EEH60797.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 348

 Score = 45.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 60/203 (29%), Gaps = 11/203 (5%)

Query: 30  SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA--------KEGELSVRFNSLVSA 81
            S+     E+ ERL F GD++L   ++  L+                     R ++LV++
Sbjct: 101 RSVPRDGAET-ERLAFFGDKVLNHAVAMSLYAQQVRMRERPGHEDDASYCVGRMSTLVAS 159

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
              +++   L                        +       A   +  G +   T VD+
Sbjct: 160 ARSNKLFTRLLARLLRDDMIAAVPPGALEKGRAHSVGTMIEAAVFLVHEGSDEGQTAVDE 219

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAP 200
                  ++ +   +      E+                   D  D  F     + G+  
Sbjct: 220 VGLFLLEQAEEMAAEVFNFKGEFYELVAKGVEGEMEVKTLKEDRPDEYFMAYATLDGVK- 278

Query: 201 AQGMDCSKRAAEQVAAAEVLKRE 223
           A     +K  AE  AA  VL+R 
Sbjct: 279 ANARGRNKLEAEHGAAKAVLERL 301


>gi|240142575|ref|YP_002967088.1| hypothetical protein MexAM1_META2p0952 [Methylobacterium extorquens
           AM1]
 gi|240012522|gb|ACS43747.1| Hypothetical protein MexAM1_META2p0952 [Methylobacterium extorquens
           AM1]
          Length = 690

 Score = 45.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEI--SGLAPAQ--GMDCSKRAAEQVAAAEVL 220
                     GP H P FT V  +   G           SK+ AE+VAA  +L
Sbjct: 624 PMPRFEVKGDGPSHAPTFTAVARLRAGGRDLVTPACAGRSKKEAERVAARAML 676


>gi|198459278|ref|XP_001361331.2| GA11141 [Drosophila pseudoobscura pseudoobscura]
 gi|198136635|gb|EAL25909.2| GA11141 [Drosophila pseudoobscura pseudoobscura]
          Length = 1318

 Score = 45.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
              +       T       ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLFQFCAKTRTEPKLEVRQTGPKNRQRFLCEVRVEQTPYIGVGNSTNKKDAEKNACRD 63


>gi|195155374|ref|XP_002018580.1| GL17788 [Drosophila persimilis]
 gi|194114376|gb|EDW36419.1| GL17788 [Drosophila persimilis]
          Length = 1318

 Score = 45.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
              +       T       ++GP +  RF   V +        G   +K+ AE+ A  +
Sbjct: 5   SFLFQFCAKTRTEPKLEVRQTGPKNRQRFLCEVRVEQTPYIGVGNSTNKKDAEKNACRD 63


>gi|297849274|ref|XP_002892518.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338360|gb|EFH68777.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 376

 Score = 45.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKRE 223
             T + GP H   F   V ++G+         +++AAEQ AA   L+  
Sbjct: 34  YETVKEGPSHKSFFQSTVILNGVRYNSLPGFFNRKAAEQSAAEVALQEL 82



 Score = 40.3 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 26/76 (34%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q   +        K  LQE+A       P Y+           +FT  VEI G+      
Sbjct: 90  QCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQRIETLGRATQFTCTVEIGGIKYTGAA 149

Query: 205 DCSKRAAEQVAAAEVL 220
             +K+ AE  A    L
Sbjct: 150 TRTKKDAEISAGRTAL 165


>gi|198420373|ref|XP_002122509.1| PREDICTED: similar to dsRNA adenosine deaminase [Ciona
           intestinalis]
          Length = 517

 Score = 45.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
                   +A+            SGP H   F+ V  I       G+  +K+ ++  +A 
Sbjct: 58  NPISVINEYAQSKQLSVKCEVSSSGPSHKQMFSTVFTIGDDVFPAGIGSNKKESKVKSAE 117

Query: 218 EVLKREG 224
            VL +  
Sbjct: 118 IVLHQLK 124


>gi|115704787|ref|XP_795846.2| PREDICTED: similar to DiGeorge syndrome critical region gene 8
           [Strongylocentrotus purpuratus]
 gi|115951896|ref|XP_001182584.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8
           [Strongylocentrotus purpuratus]
          Length = 416

 Score = 45.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              +      +   T    V   S     P F  +VEI G+   +G   SKR A+  AA 
Sbjct: 173 PVCILHEYAQRVMRTQPQYVFGESRNASAP-FEALVEIKGMKYGRGEATSKRLAKAEAAK 231

Query: 218 EVLKRE 223
           + L   
Sbjct: 232 KTLDIL 237


>gi|291448524|ref|ZP_06587914.1| predicted protein [Streptomyces roseosporus NRRL 15998]
 gi|291351471|gb|EFE78375.1| predicted protein [Streptomyces roseosporus NRRL 15998]
          Length = 775

 Score = 45.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 61/219 (27%), Gaps = 28/219 (12%)

Query: 23  LEKALTHSSISHSYQ--------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           L +ALTHSS  H  +           + L   G  +L  L          +         
Sbjct: 467 LTQALTHSSYVHENRTDVAAHHQRDNQLLAHHGSLVLNHLAKHARVGRILAHGLVPDEDE 526

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
                     ++    L  A  +       +   S   S  AD  +S+ A  +   G  +
Sbjct: 527 ARMHT---PANEDTARLGTALALADGMRTGRGEDSQRRSTVADAAQSVAATAWRLHGTRL 583

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
                            + +   +                +    R+G DH   FT  + 
Sbjct: 584 LRRRPAV----LDGWLSELQYQHEPVTALNLLTTMFGMTHHYEYERTGLDHLQTFTSTLV 639

Query: 195 ISGLAPAQG---------MD-CSKRAAEQVAAAEVLKRE 223
           +S    A+G             SK  A++  A +VL+  
Sbjct: 640 LSD---ARGRVHRWAVPPEGPSSKSDADKTTAQDVLEIL 675



 Score = 37.6 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GPDHD R+  +    G   A+G   +K+
Sbjct: 372 EGPDHDKRYIAIARTGGGRSARGEGRNKK 400


>gi|239945065|ref|ZP_04697002.1| hypothetical protein SrosN15_29015 [Streptomyces roseosporus NRRL
           15998]
 gi|239991527|ref|ZP_04712191.1| hypothetical protein SrosN1_29757 [Streptomyces roseosporus NRRL
           11379]
          Length = 591

 Score = 45.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 61/219 (27%), Gaps = 28/219 (12%)

Query: 23  LEKALTHSSISHSYQ--------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           L +ALTHSS  H  +           + L   G  +L  L          +         
Sbjct: 283 LTQALTHSSYVHENRTDVAAHHQRDNQLLAHHGSLVLNHLAKHARVGRILAHGLVPDEDE 342

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
                     ++    L  A  +       +   S   S  AD  +S+ A  +   G  +
Sbjct: 343 ARMHT---PANEDTARLGTALALADGMRTGRGEDSQRRSTVADAAQSVAATAWRLHGTRL 399

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
                            + +   +                +    R+G DH   FT  + 
Sbjct: 400 LRRRPAV----LDGWLSELQYQHEPVTALNLLTTMFGMTHHYEYERTGLDHLQTFTSTLV 455

Query: 195 ISGLAPAQG---------MD-CSKRAAEQVAAAEVLKRE 223
           +S    A+G             SK  A++  A +VL+  
Sbjct: 456 LSD---ARGRVHRWAVPPEGPSSKSDADKTTAQDVLEIL 491



 Score = 37.6 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GPDHD R+  +    G   A+G   +K+
Sbjct: 188 EGPDHDKRYIAIARTGGGRSARGEGRNKK 216


>gi|301055340|ref|YP_003793551.1| C-terminal part of ribonuclease III [Bacillus anthracis CI]
 gi|300377509|gb|ADK06413.1| C-terminal part of ribonuclease III [Bacillus cereus biovar
           anthracis str. CI]
          Length = 74

 Score = 45.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             D K++LQE          EY++    GP H+  F   V ++ +A   G   SK+
Sbjct: 1   MMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTLNNVALGLGSGKSKK 56


>gi|198414898|ref|XP_002128212.1| PREDICTED: similar to LOC495438 protein [Ciona intestinalis]
          Length = 802

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y +  ++G     RFT  V   G    +G   +K+ A+  AA   L R
Sbjct: 190 YDLIEQTGNGTSTRFTFQVVFRGEIY-KGSGVNKKMAKHEAAKAALSR 236



 Score = 39.1 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +   G   +Y    R G      FT+ V ++G A  QG   +K+ A+   A  +L+
Sbjct: 326 NEMVGPGIQYNCVDRVGDQKSHYFTMEVCLNGRAY-QGQGKNKKLAKAGVAMRILR 380


>gi|114583638|ref|XP_526045.2| PREDICTED: 39S ribosomal protein L44, mitochondrial [Pan
           troglodytes]
          Length = 332

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 71/236 (30%), Gaps = 21/236 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48
                 R+   F+   LL+ A  +S    S                   +S + L   G 
Sbjct: 72  IQAFGHRLQENFS-LDLLKTAFVNSCYIKSEEAKRQQLGIEKEAVLLNLKSNQELSEQGT 130

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
                 ++  L + +       +    + L   E    VAR L +               
Sbjct: 131 SFSQTCLTQFLEDEYPDMPTEGIKNLVDFLTGEEVVCHVARNLAVEQLTLSEEFPVPP-- 188

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
           + +      V+ +L+ +   +        F+      + L       +    L E    +
Sbjct: 189 TVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWKIINPMGLLVEELKKR 248

Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 249 NVSPPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304


>gi|301758056|ref|XP_002914888.1| PREDICTED: interferon-induced, double-stranded RNA-activated
           protein kinase-like [Ailuropoda melanoleuca]
          Length = 539

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E       GP+   RF    +I     A G   +K+ A+Q+AA     + 
Sbjct: 119 VNYEQCELKEYGPE---RFYYRCKIGQKEYAVGGGATKQDAKQMAAKFAYDQI 168



 Score = 34.9 bits (78), Expect = 7.7,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
           Y    + GP H+ +FT  V I+    ++   
Sbjct: 27  YYELSKEGPAHNLKFTFQVIINERKYSEAEG 57


>gi|281341947|gb|EFB17531.1| hypothetical protein PANDA_002815 [Ailuropoda melanoleuca]
          Length = 371

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E       GP+   RF    +I     A G   +K+ A+Q+AA     + 
Sbjct: 39  VNYEQCELKEYGPE---RFYYRCKIGQKEYAVGGGATKQDAKQMAAKFAYDQI 88


>gi|297803978|ref|XP_002869873.1| hypothetical protein ARALYDRAFT_492708 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315709|gb|EFH46132.1| hypothetical protein ARALYDRAFT_492708 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 965

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RF+V   +S     +G+  S+R A   AA   ++  
Sbjct: 753 RFSVEAWLSNEKIGEGIGKSRREALHKAAEASIQNL 788



 Score = 38.0 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 13/36 (36%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           H       VEI G    +G+  +   A   AA   L
Sbjct: 883 HRDELRAQVEIDGRVVGEGVGSTWDEARMQAAERAL 918


>gi|332029375|gb|EGI69330.1| Double-stranded RNA-specific editase 1 [Acromyrmex echinatior]
          Length = 356

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP  +  + V  E+ G     G   SK  A Q AA   LK  
Sbjct: 125 ETQGPMPNSLYLVHAELDGKTY-VGQGLSKPLARQNAAENALKAL 168


>gi|110738453|dbj|BAF01152.1| hypothetical protein [Arabidopsis thaliana]
          Length = 967

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RF+V   +S     +G+  S+R A   AA   ++  
Sbjct: 755 RFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNL 790



 Score = 38.4 bits (87), Expect = 0.80,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 13/36 (36%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           H       VEI G    +G+  +   A   AA   L
Sbjct: 885 HRDELHAQVEIDGRVVGEGVGSTWDEARMQAAERAL 920


>gi|62321227|dbj|BAD94401.1| putative protein [Arabidopsis thaliana]
          Length = 614

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RF+V   +S     +G+  S+R A   AA   ++  
Sbjct: 402 RFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNL 437



 Score = 38.4 bits (87), Expect = 0.80,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 13/36 (36%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           H       VEI G    +G+  +   A   AA   L
Sbjct: 532 HRDELHAQVEIDGRVVGEGVGSTWDEARMQAAERAL 567


>gi|79481163|ref|NP_193898.3| CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1); double-stranded RNA
           binding / nucleotide phosphatase [Arabidopsis thaliana]
 gi|75111335|sp|Q5YDB6|CPL1_ARATH RecName: Full=RNA polymerase II C-terminal domain phosphatase-like
           1; Short=FCP-like 1; AltName: Full=Carboxyl-terminal
           phosphatase-like 1; Short=AtCPL1; Short=CTD
           phosphatase-like 1; AltName: Full=Protein FIERY 2;
           AltName: Full=Protein JASMONATE OVEREXPRESSING 1
 gi|49175305|gb|AAT52022.1| C-terminal domain phosphatase-like 1 [Arabidopsis thaliana]
 gi|332659088|gb|AEE84488.1| RNA polymerase II C-terminal domain phosphatase-like 1 [Arabidopsis
           thaliana]
          Length = 967

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RF+V   +S     +G+  S+R A   AA   ++  
Sbjct: 755 RFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNL 790



 Score = 38.4 bits (87), Expect = 0.80,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 13/36 (36%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           H       VEI G    +G+  +   A   AA   L
Sbjct: 885 HRDELHAQVEIDGRVVGEGVGSTWDEARMQAAERAL 920


>gi|4455275|emb|CAB36811.1| putative protein [Arabidopsis thaliana]
 gi|7268964|emb|CAB81274.1| putative protein [Arabidopsis thaliana]
          Length = 995

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RF+V   +S     +G+  S+R A   AA   ++  
Sbjct: 769 RFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNL 804



 Score = 38.4 bits (87), Expect = 0.80,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 13/36 (36%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           H       VEI G    +G+  +   A   AA   L
Sbjct: 899 HRDELHAQVEIDGRVVGEGVGSTWDEARMQAAERAL 934


>gi|324505424|gb|ADY42332.1| Double-stranded RNA-specific editase B2 [Ascaris suum]
          Length = 863

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 170 GVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               + + T+ + PD   PRF     + G         SK+ A+Q+A    LK  
Sbjct: 132 YPDFKDQCTYDTLPDMKVPRFVCKFSVQGKEF-SADASSKKIAKQLACERALKDL 185


>gi|222636484|gb|EEE66616.1| hypothetical protein OsJ_23196 [Oryza sativa Japonica Group]
 gi|305682532|dbj|BAJ16352.1| small RNA methyltransferase [Oryza sativa Japonica Group]
          Length = 938

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 188 RFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225
            +   ++I GL     G    K+ AEQ AA   L + GI
Sbjct: 48  VYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGI 86


>gi|218199137|gb|EEC81564.1| hypothetical protein OsI_25006 [Oryza sativa Indica Group]
          Length = 938

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 188 RFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225
            +   ++I GL     G    K+ AEQ AA   L + GI
Sbjct: 48  VYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGI 86


>gi|115470715|ref|NP_001058956.1| Os07g0164000 [Oryza sativa Japonica Group]
 gi|113610492|dbj|BAF20870.1| Os07g0164000 [Oryza sativa Japonica Group]
 gi|215767104|dbj|BAG99332.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 926

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 188 RFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225
            +   ++I GL     G    K+ AEQ AA   L + GI
Sbjct: 62  VYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGI 100


>gi|50510095|dbj|BAD30766.1| putative HEN1 [Oryza sativa Japonica Group]
          Length = 929

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 188 RFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225
            +   ++I GL     G    K+ AEQ AA   L + GI
Sbjct: 48  VYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGI 86


>gi|331236920|ref|XP_003331118.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309310108|gb|EFP86699.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1410

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 84/258 (32%), Gaps = 58/258 (22%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            L+   LE++IGY F  + LLE                   E+LGD ++ + I    +  F
Sbjct: 1110 LKCQALEEKIGYVFKEK-LLE-------------------EWLGDAVVDMWIVQHAYKRF 1149

Query: 64   DSAKEGELSVRFNSLVSAET-CSQVARELDLASFIRVSSD-------------------- 102
            D+A   EL++    LVS  +      ++L L   I   S+                    
Sbjct: 1150 DNATAEELTLARAKLVSNGSLGFLAIKKLGLHKMIMHKSESFEQACVEAIKAIEPFTSIE 1209

Query: 103  ------LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS---GKF 153
                      V      I  DV+E+++ A+++D   ++   +         +        
Sbjct: 1210 EFFSNLENLFVVFDPPKILNDVLEAIVGAVFIDSRFDLPTVYRTIDKIFEDVTPGLSRIV 1269

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVT-----FRSGPDHDPRF--TVVVEISGLAPAQGM-D 205
             RD  + +                T        G D DP       +E+ G   A G   
Sbjct: 1270 ARDPLSTMLRLRDQYQCAELRRVSTTIKEPNPEGEDKDPISVKVCRIELHGQEIASGRHA 1329

Query: 206  CSKRAAEQVAAAEVLKRE 223
             S   AEQ A+   LK  
Sbjct: 1330 SSASVAEQRASLAALKVL 1347


>gi|288923600|ref|ZP_06417710.1| double-stranded RNA binding domain protein [Frankia sp. EUN1f]
 gi|288345062|gb|EFC79481.1| double-stranded RNA binding domain protein [Frankia sp. EUN1f]
          Length = 110

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKR 222
           GPDH  RFT    ++G    +G   SK+ AEQ AAA    +L++
Sbjct: 21  GPDHAKRFTAFARVAGEVLGEGEGGSKKEAEQRAAATAFAMLEK 64


>gi|302698141|ref|XP_003038749.1| hypothetical protein SCHCODRAFT_64720 [Schizophyllum commune H4-8]
 gi|300112446|gb|EFJ03847.1| hypothetical protein SCHCODRAFT_64720 [Schizophyllum commune H4-8]
          Length = 278

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 54/195 (27%), Gaps = 12/195 (6%)

Query: 42  RLEFLGDRILGLLI-STLLFNHFDSAKEGELSVRFNSLVS---AETCSQVARELDLASFI 97
           R E L D  +   + +  L     +A     + R +  V+    +    +     +    
Sbjct: 79  RREALSDDRINHWMDAYELKGKIKAAPSERQAARSSPQVNDFFKKYVGAIYIRQGMGVIQ 138

Query: 98  RVS--------SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149
                        +           Q         ++        A   +       +  
Sbjct: 139 TWISRLLNPDAEPVLPPEGRGTPQPQRQGSLLQDRSMASPPPPPGAPPPMPMGAPPGSSH 198

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                 +  +       A            ++GP H P ++V   ++G     G   S++
Sbjct: 199 PMHASGNGVSLSLMNQTAMQKGFAVNYEASQTGPPHAPTWSVRCLLNGTEYGTGTGTSQK 258

Query: 210 AAEQVAAAEVLKREG 224
            A+++AA E  +R G
Sbjct: 259 KAKELAAQEAWERLG 273


>gi|322799941|gb|EFZ21067.1| hypothetical protein SINV_02537 [Solenopsis invicta]
          Length = 320

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP  +  + V  E+ G     G   SK  A Q AA   LK  
Sbjct: 87  ESQGPMPNSLYLVHAELDGKTY-VGQGLSKPLARQNAAENALKAL 130


>gi|302854164|ref|XP_002958592.1| hypothetical protein VOLCADRAFT_99895 [Volvox carteri f. nagariensis]
 gi|300256053|gb|EFJ40329.1| hypothetical protein VOLCADRAFT_99895 [Volvox carteri f. nagariensis]
          Length = 2198

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 181  SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             G      +T+     G    +G   +K+ A+++AA + LK  GI
Sbjct: 1800 DGESGSVGWTITAIYGGKDIGRGHAATKKDAKRLAAMDGLKALGI 1844


>gi|313226997|emb|CBY22143.1| unnamed protein product [Oikopleura dioica]
          Length = 551

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            F V +E +G    +G+  +K+ AE  AA  +LK   
Sbjct: 44  EFKVTLENNGE-IFEGIGSNKKKAEHRAAFNLLKTIK 79


>gi|313218350|emb|CBY41585.1| unnamed protein product [Oikopleura dioica]
          Length = 165

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            F V +E +G    +G+  +K+ AE  AA  +LK   
Sbjct: 44  EFKVTLENNGE-IFEGIGSNKKKAEHRAAFNLLKTIK 79


>gi|224074235|ref|XP_002304313.1| predicted protein [Populus trichocarpa]
 gi|222841745|gb|EEE79292.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 58/194 (29%), Gaps = 29/194 (14%)

Query: 9   LEKR--IGY------AFANRS-------LLEKALTHSSISHSYQES----YERLEFLGDR 49
           LE +  +GY       F + +       LL  A  H S   +        + RL FLG  
Sbjct: 135 LEAKQALGYPLEPSDRFGDDNPAKQFDTLLYLAFQHPSCERTNARHVRSGHSRLCFLGQY 194

Query: 50  ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
           +L L  +      +       L  R   L+      +  +   L + I    ++ K    
Sbjct: 195 VLELAFAEYFLQRYPRESPAPLRERVFGLIGKRNLPKWIKAASLHNLIFPYDNMDKLQRK 254

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
                   V  ++  A+YL  G+      + +           F  D + E  +    + 
Sbjct: 255 EREPPVKSVFWAVFGAIYLCFGMPEVYRVLFEV----------FEMDPEAEDCQPKLRRQ 304

Query: 170 GVTPEYKVTFRSGP 183
               +Y      G 
Sbjct: 305 FEDVDYVSVEFEGK 318



 Score = 39.5 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 18  ANRSL---LEKALTHSS-ISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S     + +  YERLE++G +I  ++++  L      A    L 
Sbjct: 392 RNIELGLGLQLCFLHPSNYKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQ 451

Query: 73  VRFNSLVSAETCSQVARELDLASFIRV 99
            +   ++  + C +  RE  L  +I  
Sbjct: 452 EKHRRVLMNKFCGRYLREKHLHKYITY 478


>gi|125561394|gb|EAZ06842.1| hypothetical protein OsI_29078 [Oryza sativa Indica Group]
          Length = 310

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   V  +G     G   +K+ AEQ AA   +K  
Sbjct: 157 YVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 191


>gi|115476208|ref|NP_001061700.1| Os08g0384100 [Oryza sativa Japonica Group]
 gi|75225116|sp|Q6YW64|DRB4_ORYSJ RecName: Full=Double-stranded RNA-binding protein 4; AltName:
           Full=dsRNA-binding protein 4
 gi|40253891|dbj|BAD05825.1| unknown protein [Oryza sativa Japonica Group]
 gi|113623669|dbj|BAF23614.1| Os08g0384100 [Oryza sativa Japonica Group]
          Length = 312

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   V  +G     G   +K+ AEQ AA   +K  
Sbjct: 159 YVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 193


>gi|208690901|gb|ACI31226.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Trachypithecus francoisi]
          Length = 550

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           V  E  ++   GP+    F    ++     + G   +K+ A+Q+AA   
Sbjct: 116 VNYEPCISGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKFA 161


>gi|208690899|gb|ACI31225.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Colobus
           guereza]
          Length = 550

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           V  E  ++   GP+    F    ++     + G   +K+ A+Q+AA   
Sbjct: 116 VNYEPCISGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKFA 161


>gi|253723115|pdb|1STU|A Chain A, Double Stranded Rna Binding Domain
          Length = 68

 Score = 45.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L  
Sbjct: 6   HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLVE 64

Query: 223 E 223
            
Sbjct: 65  L 65


>gi|307169043|gb|EFN61887.1| Double-stranded RNA-specific editase Adar [Camponotus floridanus]
          Length = 324

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP  +  + V  E+ G     G   SK  A Q AA   LK  
Sbjct: 93  ETQGPMTNSLYLVHAELDGKTY-VGQGLSKPLARQNAAENALKAL 136


>gi|145485799|ref|XP_001428907.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395996|emb|CAK61509.1| unnamed protein product [Paramecium tetraurelia]
          Length = 316

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 65/239 (27%), Gaps = 26/239 (10%)

Query: 15  YAFANRSLLEKALT---H------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFD- 64
           + F N ++L +ALT   H               + E    +G  IL    S  L      
Sbjct: 6   FRFQNINILAQALTNKIHELEFQSKKGIKYPFGNNEEFVVIGQMILEFYFSDYLIQRGYF 65

Query: 65  -----SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC----SFMTSIQ 115
                   +     + + +V         + L   +      ++ +            I 
Sbjct: 66  ITLSRYPNKDSSIKKPSDIVQLRQRLLNEKNLADIALQYSLPNIVQIGNQTALKRNPKIL 125

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW------KQRALKSGKFRRDAKTELQEWAHAKF 169
           A+ +++++AA Y D G ++                +         +             F
Sbjct: 126 AESLKAILAAQYYDSGFDLEHVREITQPLFKELLDKGQNIPIAELKQNAKSSFLEFINNF 185

Query: 170 GVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
                          +    F V +E+  L        +KR  EQ+   E L +    T
Sbjct: 186 TDLKPKVSIEWKKDANSANVFKVQLELDSLLNITRTGINKRQTEQLVYHEALMKLKQKT 244


>gi|126338334|ref|XP_001374261.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 332

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 70/236 (29%), Gaps = 21/236 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48
                 R+   F+   LL+ A  +     S                      + L   G 
Sbjct: 73  VQAFCHRLHENFS-LELLKTAFINRCYIESEETRRQKLGVDKEAVALNLRDNQELSEQGR 131

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
                 ++  L + + S     +    + L S +    VAR L +      +      + 
Sbjct: 132 AFSQTCLTQFLGDAYPSLPSEGIKAIVDFLTSEDIVCHVARNLAVEQLTLSAEFPVPQM- 190

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
             +      V+ +L+ +            F+      + L       +    L +    +
Sbjct: 191 -VLQQTFFAVIGALLQSSGPQKTSIFIRDFLITQMTGKELFEMWKVVNPMGLLVDELTKR 249

Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 250 NISAPEPRITRQSGSSTVLPLYFVGLYCEKKLIAEGPGETVLVAEEEAARVALRKL 305


>gi|113200881|gb|ABI32401.1| dicer [Gallus gallus]
          Length = 73

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           D +  V VE+ G    +G+  S R A+  AA   L+   
Sbjct: 30  DGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLK 68


>gi|73963942|ref|XP_868518.1| PREDICTED: similar to dicer1 isoform 2 [Canis familiaris]
          Length = 63

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           D +  V VE+ G    +G+  S R A+  AA   L+   
Sbjct: 16  DGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLK 54


>gi|225453150|ref|XP_002272597.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 671

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/198 (10%), Positives = 46/198 (23%), Gaps = 19/198 (9%)

Query: 42  RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
           +++ L   +LG  I    +   +  K   + V++          +      +  +  +  
Sbjct: 229 KIDLLNKALLGKWIWRYAYEKDNLWKRV-IGVKYGQEGCGWRTKEACGSFGVGVWKEIMK 287

Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--------------- 146
           +      S    +      +                       +                
Sbjct: 288 EANWCWESIEFKVGKGTRFAPSQIDAFGWIRSQQKFLFLLGKPRGGRSSLWIGFKEGGGS 347

Query: 147 --ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
                             +    +  +      T   G  H P+F   V + G       
Sbjct: 348 SLTDVFCLPEHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSPN 407

Query: 205 DCS-KRAAEQVAAAEVLK 221
             S ++AAEQ  A   L+
Sbjct: 408 TFSHRKAAEQDVARLALE 425



 Score = 42.2 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           P F   +  +G+        +K+ AEQ+AA  V+
Sbjct: 474 PVFVSSLVFNGVTYTGDAGRNKKEAEQLAARTVI 507


>gi|330982803|gb|EGH80906.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 77

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
           +D KT LQE+  ++    P Y+V    G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 1   KDPKTRLQEFLQSRACELPRYEVVDIQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 60


>gi|297667845|ref|XP_002812174.1| PREDICTED: interferon-induced, double-stranded RNA-activated
           protein kinase [Pongo abelii]
          Length = 510

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SG      F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 123 SGVHGLEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKFAYLQI 165



 Score = 39.9 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I G    +    S
Sbjct: 32  NSGPPHDRRFTFRVIIDGREFPEAEGRS 59


>gi|208690883|gb|ACI31217.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pongo
           pygmaeus pygmaeus]
          Length = 551

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SG      F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 123 SGVHGLEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKFAYLQI 165



 Score = 39.9 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I G    +    S
Sbjct: 32  NSGPPHDRRFTFRVIIDGREFPEAEGRS 59


>gi|55730356|emb|CAH91900.1| hypothetical protein [Pongo abelii]
          Length = 512

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SG      F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 123 SGVHGLEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKFAYLQI 165



 Score = 39.9 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I G    +    S
Sbjct: 32  NSGPPHDRRFTFRVIIDGREFPEAEGRS 59


>gi|168010927|ref|XP_001758155.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690611|gb|EDQ76977.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 893

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +G      F   VE+ G    +G   S   A+Q AA E 
Sbjct: 853 TGVGQRQIFRCQVEVGGRTLGRGSGPSWDDAKQQAAKEA 891


>gi|12597661|ref|NP_075066.1| 39S ribosomal protein L44, mitochondrial precursor [Homo sapiens]
 gi|51316917|sp|Q9H9J2|RM44_HUMAN RecName: Full=39S ribosomal protein L44, mitochondrial;
           Short=L44mt; Short=MRP-L44; Flags: Precursor
 gi|10434358|dbj|BAB14234.1| unnamed protein product [Homo sapiens]
 gi|15082305|gb|AAH12058.1| Mitochondrial ribosomal protein L44 [Homo sapiens]
 gi|48146703|emb|CAG33574.1| MRPL44 [Homo sapiens]
 gi|62822376|gb|AAY14925.1| unknown [Homo sapiens]
 gi|119591225|gb|EAW70819.1| mitochondrial ribosomal protein L44, isoform CRA_a [Homo sapiens]
 gi|119591226|gb|EAW70820.1| mitochondrial ribosomal protein L44, isoform CRA_a [Homo sapiens]
 gi|325463573|gb|ADZ15557.1| mitochondrial ribosomal protein L44 [synthetic construct]
          Length = 332

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 71/236 (30%), Gaps = 21/236 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48
                 R+   F+   LL+ A  +S    S                   +S + L   G 
Sbjct: 72  IQAFGHRLQENFS-LDLLKTAFVNSCYIKSEEAKRQQLGIEKEAVLLNLKSNQELSEQGT 130

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
                 ++  L + +       +    + L   E    VAR L +               
Sbjct: 131 SFSQTCLTQFLEDEYPDMPTEGIKNLVDFLTGEEVVCHVARNLAVEQLTLSEEFPVPP-- 188

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
           + +      V+ +L+ +   +        F+      + L       +    L E    +
Sbjct: 189 AVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWKIINPMGLLVEELKKR 248

Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 249 NVSAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304


>gi|194898749|ref|XP_001978930.1| GG11001 [Drosophila erecta]
 gi|190650633|gb|EDV47888.1| GG11001 [Drosophila erecta]
          Length = 321

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 77/234 (32%), Gaps = 19/234 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRI 50
                KR+G +F + S L++A T  S +   ++                   L   G RI
Sbjct: 67  LFAFSKRLGESF-DLSELQRAFTEKSFAQREEDRRRQLGIEESDLQIPHNSDLVEKGQRI 125

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
               +   L +         L    + L+S ET + V+  L     I+ +          
Sbjct: 126 ARAYVEAFLQHQLPKVPNDGLQAIASFLLSTETLAHVSSHLGTKDLIQSTEYP--PSAES 183

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
           M      V+ +L ++  ++        F+     Q+ L      ++    L++    +  
Sbjct: 184 MAKSLHAVIGALASSSGIEKAFLFVRDFICTQLNQKDLLEVWTPQEPIQVLEKICQERKL 243

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              E ++    G +     + V +  +     +G     + A + AA + L+  
Sbjct: 244 GEAEPRLLGDCGKNTVLAAYQVGIYANRQLLGKGFGEDLKTATETAAIDALQSI 297


>gi|10120841|pdb|1EKZ|A Chain A, Nmr Structure Of The Complex Between The Third Dsrbd From
           Drosophila Staufen And A Rna Hairpin
          Length = 76

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L  
Sbjct: 14  HEIGIKRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKMLVE 72

Query: 223 E 223
            
Sbjct: 73  L 73


>gi|328707654|ref|XP_001951982.2| PREDICTED: microprocessor complex subunit DGCR8-like [Acyrthosiphon
           pisum]
          Length = 477

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   V + G+    G   +K+ A+  AA   L+  
Sbjct: 257 YLCTVVLDGIQYGIGTGSTKKQAKVDAARATLQIL 291


>gi|301766360|ref|XP_002918599.1| PREDICTED: 39S ribosomal protein L44, mitochondrial-like
           [Ailuropoda melanoleuca]
 gi|281343634|gb|EFB19218.1| hypothetical protein PANDA_007087 [Ailuropoda melanoleuca]
          Length = 330

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 21/236 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48
                 R+   F+   LL+ A  +S    S                   +  + L   G 
Sbjct: 70  IQAFGHRLQETFS-LDLLKTAFVNSCYIKSEEAKRQNLGIEKEAVLLNLKDNQELSEQGT 128

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
                 ++  L + +       +    + L   E    VAR L +      +        
Sbjct: 129 SFSKTCLTQFLEDAYPDLPREGIKSLVDFLTGEEVVCHVARNLAVEQLTLSAEFPVLP-- 186

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
             +      V+ +L+ +   +        F+      + L       +    L E    +
Sbjct: 187 PVLQRTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEIWKIINPMGLLVEELKKR 246

Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               PE ++T +SG     P F V +       A+G   +   AE+ AA   L++ 
Sbjct: 247 NISAPESRLTRQSGSTTALPVFFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 302


>gi|322694902|gb|EFY86720.1| abhydrolase domain-containing protein [Metarhizium acridum CQMa
           102]
          Length = 333

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 1/104 (0%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
              +  L      H  +S   + SYERLE+LGD  L L+ S+L++  F S   G  S   
Sbjct: 60  KILDPELEATVFRHPGLSDPLR-SYERLEWLGDAYLELIASSLIYQTFTSTPTGRCSQLR 118

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
             L+  +T +Q  RE  L S   + SDL+ D+     S     +
Sbjct: 119 EILIRNKTLAQYFREYGLESKAHLPSDLKTDISRSRGSSSDKDI 162


>gi|242047516|ref|XP_002461504.1| hypothetical protein SORBIDRAFT_02g003680 [Sorghum bicolor]
 gi|241924881|gb|EER98025.1| hypothetical protein SORBIDRAFT_02g003680 [Sorghum bicolor]
          Length = 942

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 183 PDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225
           P     +   +++ GL+ A  G    K+ AEQ AA   L + GI
Sbjct: 39  PQTRSVYRCALDLPGLSVATPGTFLRKKDAEQAAAQIALDKLGI 82


>gi|328726248|ref|XP_001948877.2| PREDICTED: double-stranded RNA-specific editase 1-like
           [Acyrthosiphon pisum]
          Length = 583

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           T+ V +SG     G   SK+ A+++A    LK  
Sbjct: 148 TISVIVSGNKY-IGYGKSKKEAKEIACRNALKSL 180


>gi|45686033|ref|YP_003796.1| RNase III [Ambystoma tigrinum virus]
 gi|37722457|gb|AAP33202.1| RNase III [Ambystoma tigrinum stebbensi virus]
          Length = 373

 Score = 45.3 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 71/217 (32%), Gaps = 17/217 (7%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVRF 75
           R L  K  T  +++    ++YE LE +GD +      +     F      +    ++   
Sbjct: 25  RDLWNKVFTPKNVN--PDDNYEALEIVGDGVASYFFPSYFLKRFPQLNNPKGVKTVARLK 82

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
               S ++ S +A  L    FIR  S       S   S+  D  E+ + A+      E +
Sbjct: 83  IYYGSKKSFSSIADSLGFWKFIR--SGPVPVNPSTRESLLEDTFEAFLGAVCTAVDDEYS 140

Query: 136 GT-----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
                     K                          +     +  +   +  DH    T
Sbjct: 141 IDGLGAVVAYKIMADIFDDMDISLEYTALFDTVTRLKELMDVKKDVLGGDAVYDHRGDTT 200

Query: 191 VVVEISGLAPAQGMDCSKRA-AEQVA--AAEVLKREG 224
           V + + G    +     KR  A++ A  A ++L+REG
Sbjct: 201 V-ITLKGRVIGKATGAIKRDRAKEAAGQALDLLRREG 236


>gi|170044459|ref|XP_001849864.1| 39S ribosomal protein L44 [Culex quinquefasciatus]
 gi|167867604|gb|EDS30987.1| 39S ribosomal protein L44 [Culex quinquefasciatus]
          Length = 327

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 75/242 (30%), Gaps = 35/242 (14%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRI 50
                +R+   F +  LL++A TH S     ++                   L  LG  +
Sbjct: 65  LFAFGRRLSEQF-DAKLLQQAFTHRSFIAQEEQKQAEVGIVQPELGLSDNGELITLGGSL 123

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           +   +   L        +  +      L S  + + V+  L     I  ++         
Sbjct: 124 INQYVEAFLLTALPKLPQEGIGAIVGHLTSDASLAHVSSHLGTKDIILAATFP------V 177

Query: 111 MTSIQADVVESLIAALYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
             ++ AD +++L+ AL    G E        F+     Q+ +            L+E+  
Sbjct: 178 DQTLLADTIKALVGALQRSSGDERAFLFVRDFICTQLNQQDVNEYWTIERPLDLLKEYCQ 237

Query: 167 AKFGVTPEYKVTFRSGPD-----HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            K    PE +     G +     H+    V +  +      G       A   AA + L+
Sbjct: 238 EKKLGEPEPRSIGLVGKNTLLAAHN----VAIYCNKQFVGSGFGEDVDTAIDEAARDALR 293

Query: 222 RE 223
           + 
Sbjct: 294 QL 295


>gi|157107677|ref|XP_001649886.1| ATP-dependent RNA helicase [Aedes aegypti]
 gi|108879498|gb|EAT43723.1| ATP-dependent RNA helicase [Aedes aegypti]
          Length = 1131

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                +GP +  RF   V +   A    G   +K+ AE+ AA +
Sbjct: 20  FEVRPTGPKNRQRFLCEVRVPSEAYVGAGNSTNKKDAERNAARD 63


>gi|219689078|ref|NP_001137272.1| interferon-induced, double-stranded RNA-activated protein kinase
           [Equus caballus]
 gi|61889230|gb|AAX47275.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Equus
           caballus]
          Length = 540

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            RF    +I           +K+ A+Q+AA     + 
Sbjct: 127 KRFRCKYKIGWKEYPIASGSTKQEAKQLAAKLAYDQI 163



 Score = 34.9 bits (78), Expect = 9.7,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
                K  V  +++   ++GP HD  FT  V I+G    +   
Sbjct: 15  NKYRQKHNVVLDFRELSKTGPPHDLTFTFRVIINGREFPEAEG 57


>gi|221113037|ref|XP_002167363.1| PREDICTED: similar to neuron-specific staufen [Hydra
           magnipapillata]
          Length = 493

 Score = 45.3 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 2/158 (1%)

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
            E +V  N  +   T  +          ++   + ++ V   M    A  + +      L
Sbjct: 204 YEKAVLHNFQIHFTTIHESGPAHLRFFHVKCEVNDKETVGEAMGKKNAKNIAAEKMLKIL 263

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDP 187
           +          +K  K++  K    + +  T L +    +      Y +    G      
Sbjct: 264 EEMNLPIPPKKEKPKKKKKEKKISTKTNPVTYLTQLIQLRKEPPVTYTMKAIPGDQSGAL 323

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            F +   I+    + G   SKR A+  AA  +LK  GI
Sbjct: 324 LFQIEAAITNFK-SVGCGHSKREAKANAAMNLLKSLGI 360


>gi|331250704|ref|XP_003337958.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309316948|gb|EFP93539.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1411

 Score = 44.9 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 84/258 (32%), Gaps = 58/258 (22%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            L+   LE++IGY F  + LLE                   E+LGD ++ + I    +  F
Sbjct: 1089 LKCQALEEKIGYVFKEK-LLE-------------------EWLGDAVVDMWIVQHAYKRF 1128

Query: 64   DSAKEGELSVRFNSLVSAET-CSQVARELDLASFIRVSSD-------------------- 102
            D+A   EL++    LVS  +      ++L L   I   S+                    
Sbjct: 1129 DNATAEELTLARAKLVSNGSLGFLAIKKLGLHKVIMHKSESFEQACVEAIKAIEPFTSIE 1188

Query: 103  ------LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS---GKF 153
                      V      I  DV+E+++ A+++D   ++   +         +        
Sbjct: 1189 EFFSNLENLFVVFDPPKILNDVLEAIVGAVFIDSRFDLPTVYRTIDKIFEDVTPGLSRIV 1248

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVT-----FRSGPDHDPR--FTVVVEISGLAPAQGM-D 205
             RD  + +                T        G D DP       +E+ G   A G   
Sbjct: 1249 ARDPLSTMLRLRDQYQCAELRRVSTTIKEPNPEGEDKDPISVRVCRIELHGQEIASGRHA 1308

Query: 206  CSKRAAEQVAAAEVLKRE 223
             S   AEQ A+   LK  
Sbjct: 1309 SSASVAEQRASLAALKVL 1326


>gi|212532231|ref|XP_002146272.1| 60S ribosomal protein L3 [Penicillium marneffei ATCC 18224]
 gi|210071636|gb|EEA25725.1| 60S ribosomal protein L3 [Penicillium marneffei ATCC 18224]
          Length = 404

 Score = 44.9 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 48/161 (29%), Gaps = 4/161 (2%)

Query: 65  SAKEGELSVRFNSLVSAE-TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                      +S+V  +       R  +         D+            +  V++L+
Sbjct: 207 RPNTHWRKSIASSVVHGDIFGDPDLRTKNPKYVESRLPDIDSIPGVTAEKAASTFVQALV 266

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
             +YL  G   A  F  ++   R L   K         +L    H +    P  K+   +
Sbjct: 267 GGIYLHAGRPAAKRFFKEHIISRHLDMTKLFSFTQPARDLANLCHRENIEPPVAKIISET 326

Query: 182 GPD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           G    +P F V V        +G   S   A   AA   LK
Sbjct: 327 GRHSRNPVFNVGVFSGKDKLGEGSGASLIEARTRAAVAALK 367


>gi|198437680|ref|XP_002131410.1| PREDICTED: similar to mitochondrial ribosomal protein L44 [Ciona
           intestinalis]
          Length = 340

 Score = 44.9 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 72/226 (31%), Gaps = 15/226 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHF 63
            +  + R+     N  LL  ALT    +    E   Y +L   G + +   +S  +   F
Sbjct: 85  LTAFKNRLDIEVPN-ELLVSALTEPLFNEPSTEDTGYSKLLKDGSKFVEEFVSHYVKEAF 143

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                   S   + L+     + +A  L     ++++             + A+ + + I
Sbjct: 144 PFLTSEGRSSICDFLLLDSNIAYLALNLGYNDLLQLT------GLRSSEKVLAESLVASI 197

Query: 124 AALYLDGGIEVAGTFVDKYWKQR-----ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            A+ L  G   A  F+  +   +      +       +    L E         P+ ++ 
Sbjct: 198 EAINLSEGPVAAAKFILNFLVPQLVGKDIIDDIWKPSNPMALLTESFKISGKPAPQARLI 257

Query: 179 FRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + G     P + V +       A+    S   AE  AA   LK  
Sbjct: 258 QQCGVNTVTPIYYVGLFSGKDLIAKSGAESIVLAETDAAKLALKHI 303


>gi|170577089|ref|XP_001893878.1| hypothetical protein Bm1_12040 [Brugia malayi]
 gi|158599853|gb|EDP37292.1| hypothetical protein Bm1_12040 [Brugia malayi]
          Length = 381

 Score = 44.9 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 83/225 (36%), Gaps = 26/225 (11%)

Query: 18  ANRSLLEKALTHSSI-------------------SHSYQESYERLEFLGDRILGLLISTL 58
            ++ +L +ALT SS                    S+  +E  ++L  LG+ +L       
Sbjct: 59  TDKDVLIRALTDSSFYQRADIAEESSNAQPSKQESYEIKEHNKQLIQLGNELLWKSTCAY 118

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L     +A E  +      L + E  + +A  L + + IR +     +V         + 
Sbjct: 119 LRYGLLNAPEELIISLALKLTADEQIANLATYLGINNLIRTAEFPPSNV------SLCNA 172

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            ++LIAAL  +  I +    V        ++      +    L+ +  ++ G+  E ++ 
Sbjct: 173 FKALIAALPYERAIALIRNVVMAQLVDLDIEEVFPLAEPLAVLRCFMSSRSGMEIEPRLL 232

Query: 179 FRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +G    +P F   +  +     QG   +   A  +AA + L R
Sbjct: 233 RSAGEISAEPVFIAGIYANKKLIGQGPGETISIAVDMAAMDALMR 277


>gi|328781456|ref|XP_623721.3| PREDICTED: 39S ribosomal protein L44, mitochondrial [Apis
           mellifera]
          Length = 313

 Score = 44.9 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 70/234 (29%), Gaps = 19/234 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS---------------YQESYERLEFLGDRI 50
                +R+   F N   L +A  H S                     +S E     G  I
Sbjct: 63  IYAFNERLSEKF-NTEKLNQAFIHKSYIVEEVKKQKEIGIKEPLFNIQSNEEFIKKGKEI 121

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
              +I   L  +  S  E  +    + L+S E  +  +  +       + +         
Sbjct: 122 TSAVIKKYLNQNLSSLPENGIIAFHDYLMSQELLATASLHIGTKD--IILTGEHPVSQET 179

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
           +      +V +L  ++ ++        F+      + L            L +    +  
Sbjct: 180 LAQTFLALVGALAESVDVNHAGIFVRDFLIAGLASKDLTEIWCPTKPFETLTDMISMERK 239

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E ++  ++G +     + + +  +      G   +   A+ VAA  +L + 
Sbjct: 240 VIIEARLIGQAGKNTILSVYHIGIYANKEYLGSGFGQTIAEAKDVAAINILSQM 293


>gi|45187851|ref|NP_984074.1| ADL023Wp [Ashbya gossypii ATCC 10895]
 gi|44982635|gb|AAS51898.1| ADL023Wp [Ashbya gossypii ATCC 10895]
          Length = 228

 Score = 44.9 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55
            + G    +  +L + LTH S ++S +   E+L  LG ++L    
Sbjct: 63  DKYGLQIPD-DILLQCLTHKSFANSAKPYNEKLSLLGGQLLKWYA 106


>gi|242069681|ref|XP_002450117.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
 gi|241935960|gb|EES09105.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
          Length = 292

 Score = 44.9 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 5/58 (8%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                 + +         SGP     F   VEI G+        +K+ AE  AA   L
Sbjct: 100 YAQKMNYAIPSYICTKQASGP-----FICSVEIGGILYIGAAARTKKGAEIKAARTAL 152


>gi|125586950|gb|EAZ27614.1| hypothetical protein OsJ_11558 [Oryza sativa Japonica Group]
          Length = 258

 Score = 44.9 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 64/204 (31%), Gaps = 25/204 (12%)

Query: 42  RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
           RLEFLGD IL  L +   ++ +       L+   ++ V+    +  A +  L   I  SS
Sbjct: 46  RLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSS 105

Query: 102 DLRKDVCSFM---------------------TSIQADVVESLIAALYLDGGIEVAGTFVD 140
                  S+                        +  DV+ES+  A+YLD   +    +  
Sbjct: 106 SELHRKMSYYLEEFGQSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRS 165

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
                  L + +       +  +                ++  D        V+      
Sbjct: 166 MKRLLEPLATPETIEPDPVKGLQ---EFCDRRSFKITYEKNHVDGVSSVIARVKAGETTY 222

Query: 201 -AQGMDCSKRAAEQVAAAEVLKRE 223
            A      K  A+++A+  VLK  
Sbjct: 223 SATKSGPCKLVAKKLASKAVLKDL 246


>gi|242083576|ref|XP_002442213.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
 gi|241942906|gb|EES16051.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
          Length = 198

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 2/100 (2%)

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
              L      A             +       +     +    K G++     T  +  +
Sbjct: 85  YYKLKDAEAAAAEVALDLLPPIPPQEYTIPSLSYKNFIQEIAQKEGISLPVYNTVPTNKE 144

Query: 185 HDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223
           +   +   V+I G    +G    SK+ AE  AA       
Sbjct: 145 NSTAYKSSVQIKGE-IFEGEPGTSKKQAEMNAAKIAYHHL 183


>gi|226479846|emb|CAX73219.1| dihydrouridine synthase 2-like, SMM1 homolog [Schistosoma
           japonicum]
          Length = 511

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 4/78 (5%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCS 207
                    K  L E        +P+Y+            F   V + G          +
Sbjct: 424 FWPDHGTSPKQILSEHCKLLKWDSPKYETVENR---EKRSFFSAVLVDGRRYRNTSSCKT 480

Query: 208 KRAAEQVAAAEVLKREGI 225
           K+ AEQ AA   L+  G+
Sbjct: 481 KKYAEQAAALVCLQVLGL 498


>gi|76155978|gb|AAX27226.2| SJCHGC08917 protein [Schistosoma japonicum]
          Length = 256

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 4/78 (5%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCS 207
                    K  L E        +P+Y+            F   V + G          +
Sbjct: 169 FWPDHGTSPKQILSEHCKLLKWDSPKYETVENR---EKRSFFSAVLVDGRRYRNTSSCKT 225

Query: 208 KRAAEQVAAAEVLKREGI 225
           K+ AEQ AA   L+  G+
Sbjct: 226 KKYAEQAAALVCLQVLGL 243


>gi|198423925|ref|XP_002127604.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 9
           [Ciona intestinalis]
          Length = 1243

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 24/78 (30%), Gaps = 5/78 (6%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-----MD 205
                   ++ +     +           + GPDH+  F   + +      +        
Sbjct: 182 HGNWTVENSKGRLHQFFQQNKINPEYKYSQVGPDHNRSFISELVVYIKKLGRSLHAREHG 241

Query: 206 CSKRAAEQVAAAEVLKRE 223
            +K+ A Q  A  ++++ 
Sbjct: 242 SNKKNASQSCALSIIRQL 259



 Score = 42.6 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                      SG    P+F   V + G+     G   +K+ A+  AA +
Sbjct: 15  QKMTPSYDIQPSGSKARPKFMCEVRVDGIPYVGIGNSTNKKDAQANAAYD 64


>gi|190346940|gb|EDK39128.2| hypothetical protein PGUG_03225 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 230

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 45/114 (39%), Gaps = 3/114 (2%)

Query: 2   SALRYSTLEKRI--GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           +A     +++ +   YA ++  L  + LTH S  +  +   E+L  +G ++L L  +   
Sbjct: 56  NADNLRPIKQFLDDKYAISD-ELALQVLTHKSFGNGIKPYNEKLSAMGSKVLNLYCAKYT 114

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            +   +A E  +  +   ++ +    ++A  L L  F +     +         
Sbjct: 115 TDTPTTANENAIDGKNVDVLGSPMAKELAGRLALGLFAKSHKLNQVLFWKSYNH 168


>gi|195566706|ref|XP_002106918.1| GD17163 [Drosophila simulans]
 gi|194204313|gb|EDX17889.1| GD17163 [Drosophila simulans]
          Length = 460

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 42/173 (24%), Gaps = 6/173 (3%)

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
                 + +     +E     RF    + +   ++    +     +       +      
Sbjct: 278 HNAKYCVQSILREMQETPRGKRFLQCQTLQQICEIWELGEYCRRKQRELRTMGNSGRAEV 337

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
                + +                  + ++            +  KT+L   A       
Sbjct: 338 KPPEALAKRQKLDEAAIAIAAEFDGIICRHMPFLRSTYPSDNQLPKTQLYVHAVKAGKSP 397

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224
           P Y+         D  F  +        +    + +K+ AEQ AA   L   G
Sbjct: 398 PAYETQQC-----DKLFRSICTYDDQRFSSSYWEKNKKQAEQGAALVALLHLG 445


>gi|50511725|gb|AAT77415.1| dsRNA-binding protein LH [Brassica rapa subsp. chinensis]
          Length = 274

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221
           +    ++ +      T + GP H P     V ++ +         +++AAEQ AA   L+
Sbjct: 21  QEYAQRYKLPTPLYETIKEGPSHKPLIQSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALQ 80

Query: 222 RE 223
             
Sbjct: 81  EL 82



 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 25/72 (34%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                 K  LQE+A       P Y+          P+FT  VEI G+        +K+ A
Sbjct: 97  HEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEA 156

Query: 212 EQVAAAEVLKRE 223
           E  A    L   
Sbjct: 157 EISAGRTALIAI 168


>gi|311223109|gb|ADP76633.1| nonstructural protein NSP3 [Human rotavirus C]
 gi|311223113|gb|ADP76635.1| nonstructural protein NSP3 [Human rotavirus C]
          Length = 402

 Score = 44.9 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           D    +T  +++   A A G   SK+ A+++AA ++L + GI
Sbjct: 362 DGSITYTCYMKLE-SAEASGSGRSKKEAKRIAAYDILDQLGI 402


>gi|149699899|ref|XP_001499859.1| PREDICTED: adenosine deaminase domain containing 2 [Equus caballus]
          Length = 619

 Score = 44.5 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 21/71 (29%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
             +     T                +     G      F+V  E+ G+    G   SK  
Sbjct: 143 WPWLGPGATWACCLPFVCPLCKMGSRGPISEGLGCCSSFSVCAEVDGVVCPAGTANSKLE 202

Query: 211 AEQVAAAEVLK 221
           A+Q AA   L+
Sbjct: 203 AKQQAARSALR 213


>gi|31324225|gb|AAP47192.1| Mrpl15p [Eremothecium gossypii]
          Length = 165

 Score = 44.5 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 12 RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55
          + G    +  +L + LTH S ++S +   E+L  LG ++L    
Sbjct: 1  KYGLQIPD-DILLQCLTHKSFANSAKPYNEKLSLLGGQLLKWYA 43


>gi|195150825|ref|XP_002016351.1| GL10536 [Drosophila persimilis]
 gi|194110198|gb|EDW32241.1| GL10536 [Drosophila persimilis]
          Length = 638

 Score = 44.5 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            +  T+L +    +    P +++  ++G +      F + V  SG   A+G   SK+ A+
Sbjct: 347 ENPITKLIQLQQTRKEKEPIFELIAKNGNEASRRREFVMEVSASGTT-ARGTGNSKKLAK 405

Query: 213 QVAAAEVLKRE 223
           + AA  +L+  
Sbjct: 406 RSAAQALLELL 416



 Score = 42.6 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV--- 219
                K  +T  +KV    GP H   F     + G    +G    K+ +++ +A ++   
Sbjct: 221 HEIGIKRNMTVHFKVLREDGPAHMKNFITACVV-GSIVTEGEGNGKKLSKKRSAEKMLTE 279

Query: 220 LKRE 223
           L++ 
Sbjct: 280 LQKL 283


>gi|225678617|gb|EEH16901.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 314

 Score = 44.5 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 11/134 (8%)

Query: 23  LEKA-LTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           L+ A  TH  ++            +++YERLE LGD  + +  + L+++ F   + G LS
Sbjct: 156 LQTAIFTHEGVNDPTNTTTTTASTEKNYERLELLGDAYIEIFATRLVWDTFPRLRAGRLS 215

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV  ET ++ A    L   ++V++++R+      T ++ D+ E+ +AA+ L    
Sbjct: 216 QIREMLVKNETLAEYATRYGLDRRLQVAAEIRRQ-AKTWTKVRGDLFEAYVAAVILSHPK 274

Query: 133 EVAGTFVDKYWKQR 146
                  +   +  
Sbjct: 275 RGVEMVEEWLTQLW 288


>gi|157118092|ref|XP_001659004.1| mitochondrial ribosomal protein, L44, putative [Aedes aegypti]
 gi|108875856|gb|EAT40081.1| mitochondrial ribosomal protein, L44, putative [Aedes aegypti]
          Length = 327

 Score = 44.5 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 77/237 (32%), Gaps = 35/237 (14%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQ---------------ESYERLEFLGDRILGLLI 55
           KR+   F + ++L++A TH S     +               +    L  LG+R++   +
Sbjct: 70  KRLSEQF-DTAVLQQAFTHRSFIAQEEQRQVDVGIEKPELGLKDNRELVQLGERLIEEYV 128

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
              +           +    + L S E  + V++ L     I  +            S+ 
Sbjct: 129 EAFVLTALPRLPNEGIRSIVSGLTSQEKLANVSKHLGTKDIILAAEFP------VTDSLL 182

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWK----QRALKSGKFRRDAKTELQEWAHAKFGV 171
           AD   +++ AL    G E A  FV  +      Q+ +            L+E+   K   
Sbjct: 183 ADTFCAVVGALQKSSGDERAFLFVRDFVCTQLSQQDVNDYWTIESPLDLLREYCKEKKLG 242

Query: 172 TPEYKVTFRSGPD-----HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            PE +     G +     H     V +  +      G       A   AA + L++ 
Sbjct: 243 EPEPRSIGLVGKNTLLAAH----RVGIYCNKQFVGSGYGEDIDTAIDEAARDCLRQL 295


>gi|27262833|emb|CAD59425.1| dsRNA-binding protein [Brassica oleracea var. botrytis]
          Length = 283

 Score = 44.5 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221
           +    ++ +      T + GP H P F   V ++ +         +++AAEQ AA   L+
Sbjct: 21  QEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNYVRYDSLPGFFNRKAAEQSAAEVALQ 80

Query: 222 RE 223
             
Sbjct: 81  GL 82



 Score = 39.9 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 25/72 (34%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                 K  LQE+A       P Y+          P+FT  VEI G+        +K+ A
Sbjct: 97  HEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEA 156

Query: 212 EQVAAAEVLKRE 223
           E  +    L   
Sbjct: 157 EISSGRTALIAI 168


>gi|189241606|ref|XP_972567.2| PREDICTED: similar to adenosine deaminase [Tribolium castaneum]
 gi|270000868|gb|EEZ97315.1| hypothetical protein TcasGA2_TC011126 [Tribolium castaneum]
          Length = 850

 Score = 44.5 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L++          ++ +  + GP H P F +  +++G     G   SK+ A+      VL
Sbjct: 184 LKKNKLEYLKPLLKFTLIEQIGPSHAPTFKMAAKVNGKLYF-GNGGSKQKAQTSVTQSVL 242

Query: 221 KREG 224
           +   
Sbjct: 243 QSLN 246



 Score = 42.6 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
                    +Y++  ++GPDH P F +  +++      G+  SK  A+  
Sbjct: 270 YVENTYSLLKYRLVEQTGPDHKPTFKMAAKVNEKIY-YGVGGSKVKAQMN 318



 Score = 41.8 bits (96), Expect = 0.064,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
               GP H P F + V+++      G   SK+ A
Sbjct: 114 VEEIGPSHAPTFKMAVKVNEKIY-YGKGGSKQKA 146


>gi|326480181|gb|EGE04191.1| hypothetical protein TEQG_03222 [Trichophyton equinum CBS 127.97]
          Length = 604

 Score = 44.5 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 3/124 (2%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           MS+      +E  +GY F ++ LL KALT +    S  +   RL  LG  ++  L+  + 
Sbjct: 1   MSSKGSIRPVEDIVGYKFKSKPLLLKALTAAGSELSDYDGNRRLAQLGTALVEFLLVYIG 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +        G  +       S E C+ V +   + S+I  SS       + +      ++
Sbjct: 61  YRQNV--PRGYTTRFKIRFGSNEHCAAVIKRTGIDSYISYSSKPGVKAPTVLAKSVNVII 118

Query: 120 ESLI 123
            +  
Sbjct: 119 AATF 122


>gi|159163044|pdb|1T4L|B Chain B, Solution Structure Of Double-Stranded Rna Binding Domain
           Of S. Cerevisiae Rnase Iii (Rnt1p) In Complex With The
           5' Terminal Rna Hairpin Of Snr47 Precursor
          Length = 90

 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 186 DPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221
           DP   V   +  G     G+  + + A   AA   L+
Sbjct: 34  DPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 70


>gi|51247554|pdb|1T4N|A Chain A, Solution Structure Of Rnt1p Dsrbd
          Length = 94

 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 186 DPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221
           DP   V   +  G     G+  + + A   AA   L+
Sbjct: 35  DPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 71


>gi|50513704|pdb|1T4O|A Chain A, Crystal Structure Of Rnt1p Dsrbd
 gi|50513705|pdb|1T4O|B Chain B, Crystal Structure Of Rnt1p Dsrbd
          Length = 117

 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 186 DPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221
           DP   V   +  G     G+  + + A   AA   L+
Sbjct: 37  DPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 73


>gi|10436325|dbj|BAB14802.1| unnamed protein product [Homo sapiens]
          Length = 332

 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 72/236 (30%), Gaps = 21/236 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48
                 R+   F+   LL+ A  +S    S                   +S + L   G 
Sbjct: 72  IQAFGHRLQENFS-LDLLKTAFVNSCYIKSEEAKRQQLGIEKEAVLLNLKSNQELSEQGT 130

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
                 ++  L + +       +    + L   E    VAR L +               
Sbjct: 131 SFSQTCLTQFLEDEYPDMPTEGIKNLVDFLTGEEVVCHVARNLAVEQLTLSEEFPVPP-- 188

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
           + +      V+ +L+ +   +        F+      + L   +   +    L E    +
Sbjct: 189 AVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMRKIINPMGLLVEELKKR 248

Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 249 NVSAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304


>gi|260817370|ref|XP_002603560.1| hypothetical protein BRAFLDRAFT_79093 [Branchiostoma floridae]
 gi|229288879|gb|EEN59571.1| hypothetical protein BRAFLDRAFT_79093 [Branchiostoma floridae]
          Length = 1211

 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 205 DCSKRAAEQVAAAEVLKREGI 225
             SK+ AEQ AA  VL+   +
Sbjct: 855 AKSKKEAEQNAAKAVLEMLKV 875



 Score = 38.4 bits (87), Expect = 0.88,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 186  DPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +  F   V     G      +  SK+ +EQ AA  V+   
Sbjct: 1089 EKTFLSTVRFETAGAFLTTEVAPSKKDSEQNAAKSVIDLL 1128



 Score = 34.9 bits (78), Expect = 7.7,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 186 DPRFTVVVEISGL-APAQG-MDCSKRAAEQVAAAE 218
           +  F+  V ++G     QG    +K+ AEQ AA +
Sbjct: 475 EQGFSAQVRMTGRAEFPQGDTSSTKKEAEQSAAEK 509


>gi|260834651|ref|XP_002612323.1| hypothetical protein BRAFLDRAFT_265495 [Branchiostoma floridae]
 gi|229297700|gb|EEN68332.1| hypothetical protein BRAFLDRAFT_265495 [Branchiostoma floridae]
          Length = 444

 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
                +   K        KT L  W+  ++   P Y+   +     D +F  VV +    
Sbjct: 356 YTMHVEYIRKEYPSAVSPKTILLNWSRTEYLPQPTYETVKQ---GSDTKFNSVVTVGDKR 412

Query: 200 PAQG-MDCSKRAAEQVAAAEVLKREGI 225
            A      +K+ AEQ AA+  L+  G+
Sbjct: 413 YASSFWHKAKKLAEQAAASVCLRTLGL 439


>gi|62859019|ref|NP_001016230.1| dihydrouridine synthase 2-like, SMM1 homolog [Xenopus (Silurana)
           tropicalis]
 gi|89268176|emb|CAJ82133.1| similar to dus2l (dihydrouridine synthase 2-like) [Xenopus
           (Silurana) tropicalis]
          Length = 495

 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-M 204
              ++   +   K  L EW   +    P Y    R     D  F  VV++  +  A    
Sbjct: 356 FDKRNYMSQITPKMLLLEWCRKRKLPQPVYHTVQR---PVDKFFQSVVKVDEMQYASTLW 412

Query: 205 DCSKRAAEQVAAAEVLKREGI 225
           D SK+ AEQ AA   L   G+
Sbjct: 413 DKSKKLAEQSAAIVCLHTLGL 433


>gi|294655348|ref|XP_457483.2| DEHA2B12166p [Debaryomyces hansenii CBS767]
 gi|199429888|emb|CAG85487.2| DEHA2B12166p [Debaryomyces hansenii]
          Length = 611

 Score = 44.5 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEV------LKREGI 225
           F V + ++ +     +D +K+AA Q AA         L + G+
Sbjct: 567 FQVSILVNDIVIGTSVDSNKKAASQRAAMNALSNKSLLNQLGV 609



 Score = 42.6 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 68/227 (29%), Gaps = 26/227 (11%)

Query: 17  FANRSLLEKALTHSSISHS------------YQESYERLEFLGDRILGLLISTLLFNHFD 64
            +N SLL K LT  S                 +    +L   G R+L   +  +L     
Sbjct: 151 ISNESLLNKILTDKSFRQPADFLESNDANDFNRSHNAKLGLRGKRLLEFALIEILDEKLP 210

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              E +L      LVS    +++A   +LA   +       ++   +  +    +  +  
Sbjct: 211 DIHEDDLYYLQFKLVSTSILTKLAFGYNLADNYKFHFSKEMNLDDKLAKLSNIFLAYIGG 270

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD----------AKTELQEWAHAKFGVTPE 174
                        ++ K ++       +                + L +     + +  +
Sbjct: 271 LALDGYSFAEIKLWIAKLYEPIIQDFNENNDTLKPLNKLALIELSFLFKQVTNMYYIPQQ 330

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK--RAAEQVAAAEV 219
                    + DP + V + I+G     G   S     A+  AA++ 
Sbjct: 331 QTTLQFDTLETDP-YVVKLSINGQTLGIGT-SSIGVEEAKVRAASDA 375


>gi|294993977|ref|ZP_06799668.1| ribonuclease III [Mycobacterium tuberculosis 210]
          Length = 188

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 4/159 (2%)

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCS 109
           + I+  LF+      EG+L+    S+V+ +  + VAR L    L   + +         +
Sbjct: 1   MTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGA 60

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAHAK 168
             +SI AD +ESL+ A+YL  G+E A   + + +      +             +   A 
Sbjct: 61  DKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAA 120

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            G+     +   +GPDHD  FT VV +       G+  S
Sbjct: 121 RGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRS 159


>gi|242209154|ref|XP_002470425.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730458|gb|EED84314.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1379

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 39/98 (39%)

Query: 126  LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
             Y     E+A +F       +   + +   D + +L  +  +  G        ++SGP H
Sbjct: 1274 SYHTKQTEMAESFRTLLHNVQNDSAAEIHSDWRMQLNNYLQSNGGSRSLTWEVYQSGPQH 1333

Query: 186  DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             P +T V  I G+   +    S+ A ++ AA + L   
Sbjct: 1334 QPSWTAVAYIRGIEYGKSTGTSQGAVKEEAARQTLAAL 1371


>gi|309360573|emb|CAP31071.2| hypothetical protein CBG_12024 [Caenorhabditis briggsae AF16]
          Length = 806

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           E++    +K   Q  +      ++  + + E    +    P +     SG DH   F   
Sbjct: 703 EMSTKQRNKMNTQNNVPIDLSTKNPISLVMELCAKRRWNAPSFTC-EESGADHSKMFIWT 761

Query: 193 VEISGLAPAQGMD-CSKRAAEQVAAAEVLKREGIW 226
           V I+ +          K+  + VA    L+  G+ 
Sbjct: 762 VVINNVQYRPMCGSKQKKEGKAVACQVALQSLGVL 796


>gi|145523894|ref|XP_001447780.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415302|emb|CAK80383.1| unnamed protein product [Paramecium tetraurelia]
          Length = 357

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 71/234 (30%), Gaps = 25/234 (10%)

Query: 15  YAFANRSLLEKALT---H------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++F N + L +ALT   H         +     + E    +G  IL    S  L      
Sbjct: 48  FSFQNTNTLAQALTNKIHELEYQSKKGTKYPFGNNEDFVGIGQMILEFFFSDYLIQR-GY 106

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             +     + + LV         R L   +      ++ +            ++   + +
Sbjct: 107 PNKETQIKKSSDLVLLRQRLLSERNLADIALSYKIDNIVQVGNQINLKKNPKILAETLKS 166

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG-----------KFRRDAKTELQEWAHAKFG--VT 172
           +      +            + +              + +++ K+   E+ +        
Sbjct: 167 IIAAQYYDSGYDLDHLREVVQPILKQVLDKGQAVPLVELKQNPKSAFLEFVNGCTNLKPK 226

Query: 173 PEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              +    S  + +P   + V +E++ L   +    +KR  EQ+   + LKR  
Sbjct: 227 VSVEWKKDSSQNGNPINIYQVQLELNNLLLIKREGVNKRNTEQLVYRDALKRLK 280


>gi|268560900|ref|XP_002646317.1| Hypothetical protein CBG12024 [Caenorhabditis briggsae]
          Length = 762

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           E++    +K   Q  +      ++  + + E    +    P +     SG DH   F   
Sbjct: 659 EMSTKQRNKMNTQNNVPIDLSTKNPISLVMELCAKRRWNAPSFTC-EESGADHSKMFIWT 717

Query: 193 VEISGLAPAQGMD-CSKRAAEQVAAAEVLKREGIW 226
           V I+ +          K+  + VA    L+  G+ 
Sbjct: 718 VVINNVQYRPMCGSKQKKEGKAVACQVALQSLGVL 752


>gi|81022920|ref|YP_392486.1| nonstructural protein 3 [Rotavirus C]
 gi|81975426|sp|Q9PY95|NSP3_ROTHC RecName: Full=Non-structural protein 3; Short=NSP3; Contains:
           RecName: Full=p38; Contains: RecName: Full=p8
 gi|5734508|emb|CAB52751.1| nonstructural protein 3 [Human rotavirus (group C / strain
           Bristol)]
          Length = 402

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           D    +T  +++   A A G   SK+ A+++AA ++L + GI
Sbjct: 362 DGSITYTCYMKLE-SAEAIGSGRSKKEAKRIAAYDILDQLGI 402


>gi|302783689|ref|XP_002973617.1| hypothetical protein SELMODRAFT_173599 [Selaginella moellendorffii]
 gi|300158655|gb|EFJ25277.1| hypothetical protein SELMODRAFT_173599 [Selaginella moellendorffii]
          Length = 807

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F V V  +G   A+G+  + R A   A+ + L+  
Sbjct: 617 QFCVEVTFNGEKIARGVGRTSRDARSRASEDALRLL 652


>gi|73992223|ref|XP_867068.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen
           homolog isoform 3 [Canis familiaris]
          Length = 257

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           + V++     A+G   +K+ A++ AA  +L+  G
Sbjct: 1   MQVKVGNHT-AEGAGTNKKVAKRNAAENMLEILG 33


>gi|332246796|ref|XP_003272538.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform
           3 [Nomascus leucogenys]
          Length = 671

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 31/125 (24%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           F       +          +   +      +     +      +          +    R
Sbjct: 130 FREDQPPEKVFKYRAPGGEELKPMCLWQVGVLRAFLLRTGWCGLWGGDLDLGPDTTWANR 189

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
                + E       V    +    S       F+V VE+ G+    G   SK  A+Q A
Sbjct: 190 LPFLLICEMESCIPVVEELAEDVVESAMGPCFPFSVSVELDGVVCPAGTANSKTEAKQQA 249

Query: 216 AAEVL 220
           A   L
Sbjct: 250 ALSAL 254


>gi|168048900|ref|XP_001776903.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671759|gb|EDQ58306.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1152

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 5/48 (10%)

Query: 181 SGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGPDH   F   + +       +  A G   +K  AE+        + 
Sbjct: 156 SGPDHAKTFVAELTVPLRNKGEVFVAVGQGPNKAEAERACCTAACAKL 203


>gi|126342287|ref|XP_001363000.1| PREDICTED: similar to NF-kappaB repressing factor, [Monodelphis
           domestica]
          Length = 680

 Score = 44.5 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V + G   A+G   SK+ ++  AA++ LK  
Sbjct: 363 NRTWRCQVFLQGHCLAEGYG-SKKVSKHAAASKALKIL 399


>gi|255584888|ref|XP_002533159.1| RNA binding protein, putative [Ricinus communis]
 gi|223527031|gb|EEF29218.1| RNA binding protein, putative [Ricinus communis]
          Length = 532

 Score = 44.1 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 62/212 (29%), Gaps = 27/212 (12%)

Query: 9   LEKR--IGYA------FANRS-------LLEKALTHSSISHSYQES----YERLEFLGDR 49
           LE +  +GY+      F + +       LL  A  H S   +        + RL FLG  
Sbjct: 137 LEAKQALGYSLEPSDNFGDDNPAKQFDTLLYLAFQHPSCERTNARHVKYGHSRLCFLGQY 196

Query: 50  ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
           +L L         +       +  R  +L+      +  +   L + I    D+ K +  
Sbjct: 197 VLELAFCEFFLQRYPRESPAPMRERVFALIGKRNLPKWIKAASLQNLIFPYDDIDKLLRK 256

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGT--FVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
                   V  +L  A+YL  G+       F        A       R    ++   +  
Sbjct: 257 DREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPEAEDCQPKLRRQLEDVDYVSVE 316

Query: 168 KFGVTPEYKVTFRSGP------DHDPRFTVVV 193
             G    ++      P       H   F   V
Sbjct: 317 FEGNKLSWQDVAAYKPPEDALFAHPRLFRACV 348



 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 18  ANRSL---LEKALTHSS-ISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S     + +  YERLEF+G +I  L+++  L      A    L 
Sbjct: 389 RNIELGLGLQLCFLHPSKYKFEHPRFCYERLEFVGQKIQDLVLAERLLMKHLDAPGKWLQ 448

Query: 73  VRFNSLVSAETCSQVARELDLASFIRV 99
            R   L+  + C +  R+  L  FI  
Sbjct: 449 ERHRRLLMNKFCGRYLRDKHLHHFIVY 475


>gi|156541332|ref|XP_001600771.1| PREDICTED: similar to GA14612-PA [Nasonia vitripennis]
          Length = 701

 Score = 44.1 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
             K  +      K GV   +  T  + P  +  F V  EI G     G   SK  A Q A
Sbjct: 453 QPKNAIMVLNEMKTGVQFTFPETQSAMP--NSLFLVHAEIEGKTY-VGQGVSKPLARQNA 509

Query: 216 AAEVLKRE 223
           A   LK  
Sbjct: 510 AENALKSL 517


>gi|156401537|ref|XP_001639347.1| predicted protein [Nematostella vectensis]
 gi|156226475|gb|EDO47284.1| predicted protein [Nematostella vectensis]
          Length = 880

 Score = 44.1 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           V       + G+   K+ +EQ AA   LK+ GI 
Sbjct: 616 VISDHKFHSTGLHKDKKQSEQNAAWFALKKLGII 649



 Score = 42.2 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 186 DPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKREGIW 226
           D +F   + + G    +   C +K+ +EQ AA   L+R G+ 
Sbjct: 838 DGKFVCDLLVDGFTF-RAKGCQTKKGSEQSAARIALQRFGVL 878


>gi|316962794|gb|EFV48776.1| ribosome biogenesis protein BOP1 [Trichinella spiralis]
          Length = 292

 Score = 44.1 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 48/175 (27%), Gaps = 7/175 (4%)

Query: 48  DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
           D  +         +    A          + VS +  +++        + ++   +   +
Sbjct: 89  DNTIKPCKVFRYHDSGVRAVACHGRYPLFASVSDDATAKIFHCTVYNDYDKMPLIVPLKI 148

Query: 108 CSFMTSIQADVVESLIAAL------YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
                 ++                 +  G   V   F          +       +   L
Sbjct: 149 LRSHRKVETVGSILDCTFHPTQPWLFTSGADGVICLFTGLKVSMTTAEGCNKGVKSPLSL 208

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
                 K G+TP Y++    G   D  F   + I     + G   SK+ A+Q AA
Sbjct: 209 LHEICGKKGLTPMYELLTSQGQGVDSLFVYRLCID-SVVSTGRGKSKKLAKQNAA 262


>gi|224076842|ref|XP_002305017.1| predicted protein [Populus trichocarpa]
 gi|222847981|gb|EEE85528.1| predicted protein [Populus trichocarpa]
          Length = 967

 Score = 44.1 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++     G    +G   ++R A++ AA   +K+ 
Sbjct: 749 QFSIETWFVGEKVGEGTGKTRREAQRQAAEGSIKKL 784



 Score = 37.6 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              VEI G    +G+  +   A+  AA + L
Sbjct: 883 HAQVEIDGQVLGKGIGLTWDEAKMQAAEKAL 913


>gi|157129657|ref|XP_001655441.1| adenosine deaminase acting on RNA (adar)-2 [Aedes aegypti]
 gi|108882042|gb|EAT46267.1| adenosine deaminase acting on RNA (adar)-2 [Aedes aegypti]
          Length = 657

 Score = 44.1 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
           Y +  ++GP H P FT+ V + G     G   SK+ A
Sbjct: 19  YNMESQTGPVHAPLFTMSVVVDGQKF-MGHGRSKKLA 54


>gi|242037143|ref|XP_002465966.1| hypothetical protein SORBIDRAFT_01g049110 [Sorghum bicolor]
 gi|241919820|gb|EER92964.1| hypothetical protein SORBIDRAFT_01g049110 [Sorghum bicolor]
          Length = 178

 Score = 44.1 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           TV V + G+      +  K+ A+++AA   L
Sbjct: 38  TVEVFVDGIQIGVAQNPQKKMAQKLAARNAL 68



 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMDCSKRA 210
           +  L +    +    P+Y+     GP H  RF   V ++            + M  S + 
Sbjct: 96  RQTLNDICLRRQWPMPQYRCINEGGPAHAKRFVYAVRVNTSDRGWTDECIGEPM-PSVKK 154

Query: 211 AEQVAAAEVLKREG 224
           A+  AA  +L+   
Sbjct: 155 AKDSAAVLLLELLN 168


>gi|145543444|ref|XP_001457408.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425224|emb|CAK90011.1| unnamed protein product [Paramecium tetraurelia]
          Length = 327

 Score = 44.1 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 76/253 (30%), Gaps = 45/253 (17%)

Query: 16  AFANRSLLEKALT---H------SSISHSYQESYERLEFLGDRILGLLISTLL------- 59
            F N++LL +ALT   H       S       + E L   G + L       +       
Sbjct: 7   QFKNKNLLIRALTNKIHELEYNQKSNQTYVYGNNEDLTVAGQQFLEFYFYDYMLLQGYSS 66

Query: 60  -------FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
                         K  ++      L++ +  +++  +L+L +F++V     +       
Sbjct: 67  FLAFRFPNQLSYFKKPNDIIQLRQRLINDQYLAEIGLQLNLQNFLKVG---NQIQLKTNQ 123

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA----------KTELQ 162
            + AD +++LI A Y D   ++       Y     L + +                  +Q
Sbjct: 124 KVLADTIKALIIAQYYDKYQDLESLRDLLYPVMEFLLNKQAIIKYLGQSTVGINSPNVIQ 183

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM---------DCSKRAAEQ 213
                +       +       ++   F + + +   +                SKR  EQ
Sbjct: 184 SKEEIEVLPKMIVEWKKNEKNNNQSMFLIQLVLDIQSKILAENYQLKIEKQGISKRITEQ 243

Query: 214 VAAAEVLKREGIW 226
               E L+    W
Sbjct: 244 QVYLEALQELKRW 256


>gi|146419064|ref|XP_001485497.1| hypothetical protein PGUG_03225 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 230

 Score = 44.1 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 45/114 (39%), Gaps = 3/114 (2%)

Query: 2   SALRYSTLEKRI--GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           +A     +++ +   YA ++  L  + LTH S  +  +   E+L  +G ++L L  +   
Sbjct: 56  NADNLRPIKQFLDDKYAISD-ELALQVLTHKSFGNGIKPYNEKLSAMGLKVLNLYCAKYT 114

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            +   +A E  +  +   ++ +    ++A  L L  F +     +         
Sbjct: 115 TDTPTTANENAIDGKNVDVLGSPMAKELAGRLALGLFAKSHKLNQVLFWKSYNH 168


>gi|117558547|gb|AAI27296.1| LOC548984 protein [Xenopus (Silurana) tropicalis]
          Length = 451

 Score = 44.1 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-M 204
              ++   +   K  L EW   +    P Y    R     D  F  VV++  +  A    
Sbjct: 312 FDKRNYMSQITPKMLLLEWCRKRKLPQPVYHTVQR---PVDKFFQSVVKVDEMQYASTLW 368

Query: 205 DCSKRAAEQVAAAEVLKREGI 225
           D SK+ AEQ AA   L   G+
Sbjct: 369 DKSKKLAEQSAAIVCLHTLGL 389


>gi|289629402|gb|AAB70372.2| Hypothetical protein F39E9.7 [Caenorhabditis elegans]
          Length = 125

 Score = 44.1 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +   +L E+A   +   P ++            F +          +G   SK  A++ A
Sbjct: 11  NPVAQLNEYAQKFYKKYPTFEFVKEQAVGKHRVFIIQATFEDKTL-EGRGPSKMIAKRAA 69

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 70  AEAILESIG 78


>gi|312283555|dbj|BAJ34643.1| unnamed protein product [Thellungiella halophila]
          Length = 502

 Score = 44.1 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RF+V   +SG    +G+  S+R A   AA   ++  
Sbjct: 291 RFSVETWLSGEKIGEGIGKSRREALHKAAEVSIQNL 326



 Score = 38.8 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 13/36 (36%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           H       VEI G    +G+  +   A   AA   L
Sbjct: 422 HRDELHAQVEIDGRVLGEGVGSTWDEARMQAAERAL 457


>gi|296089026|emb|CBI38729.3| unnamed protein product [Vitis vinifera]
          Length = 227

 Score = 44.1 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           TV V I G+      +  K+ A+++AA   L
Sbjct: 90  TVEVFIDGVQIGIAQNPQKKMAQKLAARNAL 120



 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAA 211
           +  L +    +    P Y+     GP H  RFT  V ++        + +     S + A
Sbjct: 151 RQTLNDICLRRNWPMPVYRCVNEGGPAHAKRFTFAVRVNTNDKGWTDECIGEPMPSVKKA 210

Query: 212 EQVAAAEVLKREGIW 226
           +  AA  +L+    W
Sbjct: 211 KDSAAVLLLELLNKW 225


>gi|194210388|ref|XP_001489530.2| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Equus
           caballus]
          Length = 1272

 Score = 44.1 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +FT  V + G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFTCEVRVEGYNY-TGMGNSTNKKDAQSNAARD 64


>gi|170572085|ref|XP_001891977.1| dihydrouridine synthase domain containing protein [Brugia malayi]
 gi|158603180|gb|EDP39210.1| dihydrouridine synthase domain containing protein [Brugia malayi]
          Length = 437

 Score = 44.1 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 32/123 (26%), Gaps = 11/123 (8%)

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
           S                   + A              S          L++ + A     
Sbjct: 304 SDICKAWSISDIYNCYKNIRKRATQKRKFEVDDETGISFIDLTFPPKRLRDRSGAVTPKC 363

Query: 173 PEYKVTFRSGPDH----------DPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLK 221
                   +G +           D R+  +VEI     +  +   +K+ AEQVAA   L 
Sbjct: 364 ILNAFCDENGINRPIYQCKLRITDKRYEAIVEIDHKKFSSRIGQPNKKMAEQVAALAALI 423

Query: 222 REG 224
             G
Sbjct: 424 GLG 426


>gi|255587179|ref|XP_002534167.1| conserved hypothetical protein [Ricinus communis]
 gi|223525754|gb|EEF28216.1| conserved hypothetical protein [Ricinus communis]
          Length = 89

 Score = 44.1 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P F   +   G      +  SK+ AEQ+AA  V+K  
Sbjct: 18  PVFISSLLFDGKTYTGEVCASKKEAEQLAAMAVIKTL 54


>gi|195045040|ref|XP_001991926.1| GH12926 [Drosophila grimshawi]
 gi|193901684|gb|EDW00551.1| GH12926 [Drosophila grimshawi]
          Length = 460

 Score = 44.1 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 44/173 (25%), Gaps = 6/173 (3%)

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
                 + +     +E     RF    + +   ++    D     +       +      
Sbjct: 278 HNTKYCVQSILRELQETPRGKRFLQCQTLQQICEIWHLGDYCRRRQQELKDHGNAGRANV 337

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
            +   +          +  +E     + +             +  KT L   A       
Sbjct: 338 ILSECLNNKRQKLDLSEDAMEEYEGVISRKMAFLRSTYTSDTQLPKTVLYVHAGRLGKQP 397

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224
           P Y+         D  F  +    G   +    + +K+ AEQ AA   L   G
Sbjct: 398 PCYETQRC-----DKLFRAICSYDGQRYSSSFWEKNKKQAEQGAALVALLELG 445


>gi|126304916|ref|XP_001374839.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 507

 Score = 44.1 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             F+V   +  ++  +G   SK+ A+  AA   L
Sbjct: 117 RHFSVCAMLDEMSCPEGTGSSKKEAKGQAAILAL 150


>gi|326510101|dbj|BAJ87267.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 304

 Score = 44.1 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 21/68 (30%), Gaps = 1/68 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215
                 +    K         T R+GP H P F   V I G       D  + + AE  A
Sbjct: 113 PYKSQLQVYAQKRHKDLPSYDTIRNGPPHAPLFRSTVTIDGRTFESPQDYHTTKEAEFAA 172

Query: 216 AAEVLKRE 223
           A   L   
Sbjct: 173 ARVALMSL 180



 Score = 42.2 bits (97), Expect = 0.054,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 10/59 (16%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAP-------AQGMDCSKRAAEQVAAAEVLKRE 223
                     GP H  RF   V ++G            G     + A  +AA    +R 
Sbjct: 42  PAPDYAHRSEGPAHLLRFRATVAVNGEVYHSPDDGGGSGTA---KEAHNLAAKAAFERL 97



 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223
           + GP H P F   V I G          + + +E  AA   L   
Sbjct: 229 QEGPSHAPLFKSTVTIDGQTFESPQYCQTIKESENAAANLALMSL 273


>gi|242054547|ref|XP_002456419.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
 gi|241928394|gb|EES01539.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
          Length = 448

 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMDCSKRAAE 212
             K+ LQE    +    P Y+ T R GP H P F   V ++G + +   +G   S + A 
Sbjct: 1   MYKSRLQELCQKRRWAPPVYEPT-REGPAHTPLFRATVVVNGESFSSPDEGE-RSVKEAC 58

Query: 213 QVAAAEVLKRE 223
            +AA    +  
Sbjct: 59  NLAAMAAFENL 69



 Score = 39.1 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 189 FTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKREG 224
           F   VEI G A  +G    +K+ AE  AA    +   
Sbjct: 208 FISTVEIQG-ATFRGEPGNTKKQAEMNAAKIAFQHFK 243



 Score = 38.4 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 1/36 (2%)

Query: 186 DPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220
            P F   V I G          + + AE  AA   L
Sbjct: 122 APLFKSEVTIDGQTFESPEYCRTMKEAETAAAKVAL 157


>gi|23238148|ref|NP_694466.1| Vp8 [Kadipiro virus]
 gi|3850247|gb|AAC72049.1| Vp8 [Kadipiro virus]
          Length = 302

 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
             + K  LQE    +    P Y+   + GPDH P  TV +  +G+   +    S+  AE+
Sbjct: 1   MNNVKGMLQELCVKRGLELPVYEKLSKVGPDHAPTITVKLTANGIEVIEA-ASSRAQAEK 59

Query: 214 VAAAEVLKREG 224
           +AAA + ++  
Sbjct: 60  LAAATLYEKMK 70


>gi|109101248|ref|XP_001108840.1| PREDICTED: 39S ribosomal protein L44, mitochondrial [Macaca
           mulatta]
          Length = 332

 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 71/236 (30%), Gaps = 21/236 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48
                 R+   F+   LL+ A  +S    S                   +S + L   G 
Sbjct: 72  IQAFGHRLQENFS-LDLLKTAFVNSCYIKSEEAKRQQLGIEKEAVLLNLKSNQELSEQGT 130

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
                 ++  L + F       +    + L   E    VAR L +               
Sbjct: 131 SFSQTCLTQFLEDEFPDLPTEGIRNLVDFLTGEEVVCHVARNLAVEQLTLSEEFPVPP-- 188

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
           + +      V+ +L+ +   +        F+      + L       D    L E    +
Sbjct: 189 TVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWKIIDPMGLLVEELKKR 248

Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 249 NISAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304


>gi|330844167|ref|XP_003294006.1| hypothetical protein DICPUDRAFT_84511 [Dictyostelium purpureum]
 gi|325075596|gb|EGC29463.1| hypothetical protein DICPUDRAFT_84511 [Dictyostelium purpureum]
          Length = 373

 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 21/52 (40%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 T   G +H   F  ++ ++G   +     +K+ +E+  A  VL+  
Sbjct: 17  PYATYKTETRGSEHKKDFRSILTVNGRDISSSWKKTKKDSEKECAKNVLEYL 68


>gi|240256018|ref|NP_193824.4| double-stranded RNA binding [Arabidopsis thaliana]
 gi|332658976|gb|AEE84376.1| double-stranded RNA-binding domain (DsRBD)-containing protein
           [Arabidopsis thaliana]
          Length = 743

 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            +D  +   +++   +    +   K+ +EQ AA   L++ GI
Sbjct: 34  SNDCLYRCHLQLPEFSVVSNVFKRKKDSEQSAAELALEKLGI 75


>gi|194895115|ref|XP_001978186.1| GG17837 [Drosophila erecta]
 gi|190649835|gb|EDV47113.1| GG17837 [Drosophila erecta]
          Length = 473

 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 186 DPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224
           D  F  +    G   +    + +K+ AEQ AA   L   G
Sbjct: 419 DKLFRSICTFDGQRFSSSFWEKNKKQAEQGAALVALLHLG 458


>gi|125603259|gb|EAZ42584.1| hypothetical protein OsJ_27148 [Oryza sativa Japonica Group]
          Length = 125

 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 1/62 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVAAAEVLK 221
           +    +         T   G  H  +F   V + G   +      + + AEQ AA     
Sbjct: 44  QEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAAKVAYD 103

Query: 222 RE 223
             
Sbjct: 104 TL 105


>gi|5262782|emb|CAB45887.1| putative protein [Arabidopsis thaliana]
 gi|7268889|emb|CAB79092.1| putative protein [Arabidopsis thaliana]
          Length = 870

 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            +D  +   +++   +    +   K+ +EQ AA   L++ GI
Sbjct: 34  SNDCLYRCHLQLPEFSVVSNVFKRKKDSEQSAAELALEKLGI 75


>gi|113476425|ref|YP_722486.1| ribonuclease III [Trichodesmium erythraeum IMS101]
 gi|110167473|gb|ABG52013.1| ribonuclease III [Trichodesmium erythraeum IMS101]
          Length = 209

 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 11/129 (8%)

Query: 16  AFANRSLLEKALTHSSISHSY------QESYERLEFLGDRILGL-----LISTLLFNHFD 64
            F +  LLE ALTH +  +        Q+  + LE  G   LG      +IS  L  +F 
Sbjct: 17  KFKHPELLEIALTHPNHIYDRTNIIRPQQKQQVLEHQGLANLGYVVFSRVISKYLSKNFS 76

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           S  +  L +  + LVS +  S+ A++L L  F ++    +    S    + A + E+LI 
Sbjct: 77  SLGKATLIIIESDLVSIKMLSEFAKDLKLRQFSQLGKSYKWKHKSEKNKMLAQMFEALIG 136

Query: 125 ALYLDGGIE 133
            +YL+   +
Sbjct: 137 VIYLEFDKD 145


>gi|332246671|ref|XP_003272476.1| PREDICTED: 39S ribosomal protein L44, mitochondrial-like [Nomascus
           leucogenys]
          Length = 340

 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 72/236 (30%), Gaps = 21/236 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48
                 R+  +F+   LL+ A  +S    S                   +S + L   G 
Sbjct: 72  IQAFGHRLQESFS-LDLLKTAFVNSCYIKSEEAKRQQLGIEKEAVLLNLKSNQELSEQGT 130

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
                 ++  L + +       +    + L   E    VAR L +               
Sbjct: 131 SFSQTCLTQFLEDEYPDLPTEGIKNLTDFLTGEEVVCHVARNLAVEQLTLSEEFPVPP-- 188

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
           + +      V+ +L+ +   +        F+      + L       +    L E    +
Sbjct: 189 TVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWKIINPMGLLVEELKKR 248

Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 249 NISAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304


>gi|195385930|ref|XP_002051657.1| GJ11132 [Drosophila virilis]
 gi|194148114|gb|EDW63812.1| GJ11132 [Drosophila virilis]
          Length = 318

 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KR 209
              RD   EL+++        P  ++  +SG  + P F     ++ +        S  K+
Sbjct: 99  NMNRDMLKELRDYCVRHDMPLPIIEIVQQSGSPNAPEFVACCSVASIKR---YGKSDKKK 155

Query: 210 AAEQVAAAEVL 220
            A Q AA E+L
Sbjct: 156 DARQRAAIEML 166


>gi|114052563|ref|NP_001039786.1| 39S ribosomal protein L44, mitochondrial precursor [Bos taurus]
 gi|116256057|sp|Q2KIS2|RM44_BOVIN RecName: Full=39S ribosomal protein L44, mitochondrial;
           Short=L44mt; Short=MRP-L44; Flags: Precursor
 gi|86827383|gb|AAI12532.1| Mitochondrial ribosomal protein L44 [Bos taurus]
 gi|296490187|gb|DAA32300.1| mitochondrial ribosomal protein L44 precursor [Bos taurus]
          Length = 332

 Score = 44.1 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 70/234 (29%), Gaps = 29/234 (12%)

Query: 12  RIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGDRILGLL 54
           R+   F+   LL+ A  +S    S                   +  + L   G       
Sbjct: 78  RLQETFS-LDLLKTAFVNSCYIKSEEAKRQKLGIEKEAVLLNLKDNQELSEQGTSFSQTC 136

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           ++    + F       +    + L   E    VAR L +      +            ++
Sbjct: 137 LTQFFEDAFPDLPTEGVKSLVDYLTGEEVVCHVARNLAVEQLTLSADFP------VPPAV 190

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL----KSGKFRRDAKTELQEWAHAKFG 170
                 ++I AL    G E    F+  +   +             +    L +    +  
Sbjct: 191 LRQTFFAVIGALLHSSGPERTSLFIRDFLITQMTGKELFEIWKIINPMGLLVQELKKRNI 250

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 251 SVPESRLTRQSGSTTALPVYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304


>gi|82469804|gb|ABB77160.1| R2D2 [Drosophila mauritiana]
          Length = 302

 Score = 44.1 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 43/152 (28%), Gaps = 8/152 (5%)

Query: 74  RFNSLVSAETCSQVARELDL---ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
                            ++        +V     + + +  +   A  + +      +  
Sbjct: 1   LHEFCAKTNNTPPTYHFINGEDGGFVCKVELLEIEALGNGRSKRDAKHLAAANIMRKIQI 60

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
              +     D        +     RD   EL+++        P  +V  +SG    P F 
Sbjct: 61  LPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVRHDMPLPCIEVVQQSGTPSAPEFV 120

Query: 191 VVVEISGLAPAQGMDCS--KRAAEQVAAAEVL 220
               ++ +        S  K+ A Q AA E+L
Sbjct: 121 ACCSVASIVR---YGKSDKKKDARQRAAIEML 149



 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           H     T     T+      D  F   VE+  +  A G   SKR A+ +AAA ++++  I
Sbjct: 2   HEFCAKTNNTPPTYHFINGEDGGFVCKVELLEIE-ALGNGRSKRDAKHLAAANIMRKIQI 60

Query: 226 W 226
            
Sbjct: 61  L 61


>gi|293355281|ref|XP_002728655.1| PREDICTED: adenosine deaminase domain containing 2 [Rattus
           norvegicus]
          Length = 528

 Score = 44.1 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F+V  E+ GL    G   SK  A+Q AA   L+
Sbjct: 123 FSVCAELDGLVCPAGTGSSKLEAKQQAALSALQ 155


>gi|149038317|gb|EDL92677.1| rCG51254 [Rattus norvegicus]
          Length = 194

 Score = 44.1 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F+V  E+ GL    G   SK  A+Q AA   L+
Sbjct: 123 FSVCAELDGLVCPAGTGSSKLEAKQQAALSALQ 155


>gi|293343395|ref|XP_002725441.1| PREDICTED: similar to testis nuclear RNA-binding protein [Rattus
           norvegicus]
          Length = 301

 Score = 44.1 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F+V  E+ GL    G   SK  A+Q AA   L+
Sbjct: 123 FSVCAELDGLVCPAGTGSSKLEAKQQAALSALQ 155


>gi|307199731|gb|EFN80210.1| NF-kappa-B-repressing factor [Harpegnathos saltator]
          Length = 391

 Score = 44.1 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 16/55 (29%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             V              +      + I     A     S++ A++ AAA  L + 
Sbjct: 179 CSVNVSGNKLEWKYNKKNKSCDCTIYIDSKRVACASGSSQKIAKKEAAAVALDKL 233


>gi|307176984|gb|EFN66290.1| Dosage compensation regulator [Camponotus floridanus]
          Length = 1243

 Score = 43.8 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                         +GP H  RF   + + G      G   +K+ A+  AA +
Sbjct: 12  CAKNGKEPQFDVRPTGPKHRQRFLCELRVPGFDYVGAGNSTNKKDAQGNAAKD 64


>gi|222537768|ref|NP_001138509.1| interferon-induced, double-stranded RNA-activated protein kinase
           [Pan troglodytes]
 gi|208690875|gb|ACI31213.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pan
           paniscus]
 gi|208690877|gb|ACI31214.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pan
           troglodytes]
          Length = 552

 Score = 43.8 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E   +   GP+    F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTSSTKQEAKQLAAKLAYLQI 165



 Score = 41.5 bits (95), Expect = 0.084,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I G    +G   S
Sbjct: 32  NSGPPHDRRFTFRVIIDGREFPEGEGRS 59


>gi|114576952|ref|XP_001166509.1| PREDICTED: eukaryotic translation initiation factor 2-alpha kinase
           2 isoform 4 [Pan troglodytes]
          Length = 552

 Score = 43.8 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  E   +   GP+    F    ++     + G   +K+ A+Q+AA     + 
Sbjct: 116 VNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTSSTKQEAKQLAAKLAYLQI 165



 Score = 41.5 bits (95), Expect = 0.084,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            SGP HD RFT  V I G    +G   S
Sbjct: 32  NSGPPHDRRFTFRVIIDGREFPEGEGRS 59


>gi|242219204|ref|XP_002475384.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725403|gb|EED79391.1| predicted protein [Postia placenta Mad-698-R]
          Length = 125

 Score = 43.8 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 1/104 (0%)

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +  A          +             +        +  L  W   +FG   +      
Sbjct: 13  ASAAPHACSLNQLRSAARWTARCFHAGPQHLNMPLHPRMTLNNWVQGRFGRADDLTSEEL 72

Query: 181 -SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +GP H   + V+V    +   +G    K AA+  AA   L   
Sbjct: 73  LTGPRHAATWVVIVYFRSIEYGRGTSTKKNAAKDQAAERALAAL 116


>gi|255555995|ref|XP_002519032.1| double-stranded RNA binding protein, putative [Ricinus communis]
 gi|223541695|gb|EEF43243.1| double-stranded RNA binding protein, putative [Ricinus communis]
          Length = 978

 Score = 43.8 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F+V    +G    +G   ++R A+ VAA   +K  
Sbjct: 752 QFSVEAWFAGERVGEGFGRTRREAQSVAAEASIKNL 787



 Score = 41.5 bits (95), Expect = 0.082,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +      VEI G    +G+  +   A+  AA + L
Sbjct: 890 NAEVHAQVEIDGQVMGKGIGSTFDEAKMQAAEKAL 924


>gi|307197483|gb|EFN78717.1| Dosage compensation regulator [Harpegnathos saltator]
          Length = 1243

 Score = 43.8 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                         +GP H  RF   + ISG      G   +K+ A+  AA +
Sbjct: 12  CGKNAKEPQFDVRPTGPKHRQRFLCELRISGFDYVGAGNSTNKKDAQGNAAKD 64


>gi|328726844|ref|XP_003249070.1| PREDICTED: double-stranded RNA-specific editase 1-like
           [Acyrthosiphon pisum]
          Length = 372

 Score = 43.8 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           + V +SG     G   SK+ A+++A    LK  
Sbjct: 149 ISVIVSGNKY-IGYGKSKKEAKEIACRNALKSL 180


>gi|197100516|ref|NP_001127183.1| 39S ribosomal protein L44, mitochondrial precursor [Pongo abelii]
 gi|68053049|sp|Q5REY8|RM44_PONAB RecName: Full=39S ribosomal protein L44, mitochondrial;
           Short=L44mt; Short=MRP-L44; Flags: Precursor
 gi|55725777|emb|CAH89669.1| hypothetical protein [Pongo abelii]
          Length = 332

 Score = 43.8 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 70/236 (29%), Gaps = 21/236 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48
                 R+   F+   LL+ A  +S    S                   +S + L   G 
Sbjct: 72  IQAFGHRLQENFS-LDLLKTAFVNSCYIKSEEAKRQQLGIEKEAVLLNLKSNQELSEQGT 130

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
                 ++  L + +       +      L   +    VAR L +               
Sbjct: 131 SFSQTCLTQFLEDEYPDLPTEGIKNLVEFLTGEDVVCHVARNLAVEQLTLSEEFPVPP-- 188

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
           + +      V+ +L+ +   +        F+      + L       +    L E    +
Sbjct: 189 TVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWKIINPMGLLVEELKKR 248

Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 249 NISAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304


>gi|82469842|gb|ABB77179.1| R2D2 [Drosophila simulans]
          Length = 311

 Score = 43.8 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 5/115 (4%)

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
            +  +   A  + +      +     +     D        +     RD   EL+++   
Sbjct: 47  GNGRSKRDAKHLAAANIMRKIQMLPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVR 106

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAEVL 220
                P  +V  +SG    P F     ++ +        S  K+ A Q AA E+L
Sbjct: 107 HDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAIEML 158



 Score = 39.5 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H     T     T+      D  F   VE+  L  A G   SKR A+ +AAA ++++ 
Sbjct: 11  HEFCAKTNNTPPTYNFIKGEDGGFVCKVELLELE-ALGNGRSKRDAKHLAAANIMRKI 67


>gi|296205725|ref|XP_002749884.1| PREDICTED: 39S ribosomal protein L44, mitochondrial-like
           [Callithrix jacchus]
          Length = 331

 Score = 43.8 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 71/236 (30%), Gaps = 21/236 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48
                 R+   F+   LL+ A  +S    S                   +S + L   G 
Sbjct: 72  IQAFGHRLHENFS-LDLLKTAFVNSCYIRSEEAKRQQLGIEKEAVLLNLKSNQELSEQGT 130

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
                 ++  L + F       +    + L   E    VAR L +               
Sbjct: 131 SFSKTCLTQFLEDEFPDLPTEGIRSLVDFLTGEEVVCHVARNLAVEQLTLSEEFPVPP-- 188

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
           + +      VV +L+ +   +        F+      + L       +    L E    +
Sbjct: 189 TVLQQTFFAVVGALLQSSGPERTALFIRDFLITQMTGKELFEMWKIINPMGLLVEELKKR 248

Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 249 NISLPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304


>gi|115976356|ref|XP_001183590.1| PREDICTED: similar to dsRNA adenosine deaminase [Strongylocentrotus
            purpuratus]
          Length = 1733

 Score = 43.8 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 178  TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +SGP H+PRF     + G         SK+   + AA   L+  
Sbjct: 1270 LQQSGPPHNPRFVFAACVGGRRFQHVTSRSKKDGRREAADMALRTL 1315


>gi|115722979|ref|XP_789034.2| PREDICTED: similar to dsRNA adenosine deaminase, partial
           [Strongylocentrotus purpuratus]
          Length = 1069

 Score = 43.8 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SGP H+PRF     + G         SK+   + AA   L+  
Sbjct: 606 LQQSGPPHNPRFVFAACVGGRRFQHVTSRSKKDGRREAADMALRTL 651


>gi|82469846|gb|ABB77181.1| R2D2 [Drosophila simulans]
          Length = 311

 Score = 43.8 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 5/115 (4%)

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
            +  +   A  + +      +     +     D        +     RD   EL+++   
Sbjct: 47  GNGRSKRDAKHLAAANIMRKIQMLPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVR 106

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAEVL 220
                P  +V  +SG    P F     ++ +        S  K+ A Q AA E+L
Sbjct: 107 HDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAIEML 158



 Score = 39.5 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H     T     T+      D  F   VE+  L  A G   SKR A+ +AAA ++++ 
Sbjct: 11  HEFCAKTNNTPPTYNFIKGEDGGFVCKVELLELE-ALGNGRSKRDAKHLAAANIMRKI 67


>gi|82469848|gb|ABB77182.1| R2D2 [Drosophila simulans]
 gi|82469852|gb|ABB77184.1| R2D2 [Drosophila simulans]
          Length = 311

 Score = 43.8 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 5/115 (4%)

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
            +  +   A  + +      +     +     D        +     RD   EL+++   
Sbjct: 47  GNGRSKRDAKHLAAANIMRKIQMLPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVR 106

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAEVL 220
                P  +V  +SG    P F     ++ +        S  K+ A Q AA E+L
Sbjct: 107 HDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAIEML 158



 Score = 39.5 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H     T     T+      D  F   VE+  L  A G   SKR A+ +AAA ++++ 
Sbjct: 11  HEFCAKTNNTPPTYNFIKGEDGGFVCKVELLELE-ALGNGRSKRDAKHLAAANIMRKI 67


>gi|50286821|ref|XP_445840.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525146|emb|CAG58759.1| unnamed protein product [Candida glabrata]
          Length = 226

 Score = 43.8 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 2/118 (1%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF-NHFDSAKEGELS 72
           G   ++ ++L + LTH S +H  +   E+L  LG + L L  +             G   
Sbjct: 70  GIELSDAAIL-QCLTHKSFAHGSRPYNEKLNLLGSQYLKLQAAMHSVGPENSFGNLGTPV 128

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
            +            +A+ L+   F +VS  L        + + + V+ S I A+ L  
Sbjct: 129 SKGLVSYQTAAEYVIAKNLEPLVFWKVSDPLNDGPIKGKSKVMSTVLNSFIGAILLQQ 186


>gi|195118471|ref|XP_002003760.1| GI21342 [Drosophila mojavensis]
 gi|193914335|gb|EDW13202.1| GI21342 [Drosophila mojavensis]
          Length = 318

 Score = 43.8 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KR 209
              RD   EL+++        P  ++  +SG  + P F     ++ +        S  K+
Sbjct: 99  NMNRDMLKELRDYCVRHDMPLPVIEIVQQSGSPNAPEFVACCSVASIKR---YGKSDKKK 155

Query: 210 AAEQVAAAEVL 220
            A Q AA E+L
Sbjct: 156 DARQRAAIEML 166



 Score = 38.8 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   V +  +  A G   SKR A+ +AAA ++++ 
Sbjct: 34  YLCKVVLMDIE-AFGNGRSKRDAKHLAAANIIRKL 67


>gi|332030651|gb|EGI70339.1| Dosage compensation regulator [Acromyrmex echinatior]
          Length = 1202

 Score = 43.8 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                         +GP H  RF   + I G      G   +K+ A+  AA +
Sbjct: 12  CAKNGKEPQFDVRPTGPKHRQRFLCELRIPGFDYVGAGNSTNKKDAQGNAARD 64


>gi|297799970|ref|XP_002867869.1| hypothetical protein ARALYDRAFT_492795 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313705|gb|EFH44128.1| hypothetical protein ARALYDRAFT_492795 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 943

 Score = 43.8 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 18/37 (48%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           +   +++   +    +   K+ +EQ AA   L++ GI
Sbjct: 51  YRCHLQLPDFSVVSNVFKKKKDSEQSAAELALEKLGI 87


>gi|255540729|ref|XP_002511429.1| conserved hypothetical protein [Ricinus communis]
 gi|223550544|gb|EEF52031.1| conserved hypothetical protein [Ricinus communis]
          Length = 185

 Score = 43.8 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L+K+I     N  LL +A+TH S S     +   L  +G  ++   +S         
Sbjct: 44  LEALQKQIK---QNVGLLRRAMTHPSFSEE---NNRALSVMGSNVIDTFVSLFSLRKDID 97

Query: 66  AKEGELSVRFNSLVSAETCS 85
               EL+ R   +   ET  
Sbjct: 98  ISSKELNRRIAEISKVETSC 117


>gi|94985992|ref|YP_605356.1| double-stranded RNA binding [Deinococcus geothermalis DSM 11300]
 gi|94556273|gb|ABF46187.1| double-stranded RNA binding protein [Deinococcus geothermalis DSM
           11300]
          Length = 176

 Score = 43.8 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            GP H+  F V+V  SG    QG   SKR 
Sbjct: 71  EGPPHERVFHVMVSASGRVLGQGEGRSKRD 100


>gi|297600250|ref|NP_001048796.2| Os03g0121800 [Oryza sativa Japonica Group]
 gi|255674167|dbj|BAF10710.2| Os03g0121800 [Oryza sativa Japonica Group]
          Length = 165

 Score = 43.8 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           TV V + G+      +  K+ A+++AA   L
Sbjct: 22  TVEVFVDGVQIGVAQNPQKKMAQKLAARNAL 52



 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 8/78 (10%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMDC 206
           +   +  L +    +    P+Y+     GP H  RF   V ++            + M  
Sbjct: 77  QMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPM-P 135

Query: 207 SKRAAEQVAAAEVLKREG 224
           S + A+  AA  +L+   
Sbjct: 136 SVKKAKDSAAVLLLELLN 153


>gi|311223107|gb|ADP76632.1| nonstructural protein NSP3 [Human rotavirus C]
          Length = 402

 Score = 43.8 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 201 AQGMDCSKRAAEQVAAAEVLKREGI 225
           A G   SK+ A+++AA ++L + G+
Sbjct: 378 AIGSGKSKKEAKRIAAYDILDQLGV 402


>gi|307169925|gb|EFN62434.1| tRNA-dihydrouridine synthase 2-like [Camponotus floridanus]
          Length = 467

 Score = 43.8 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 41/146 (28%), Gaps = 3/146 (2%)

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
           +T  Q+     L  + R  +   +D    +   Q   V     A   +   +      + 
Sbjct: 310 QTLEQICEVWGLGDYCRSKNKEFRDKG-LLGRFQVMPVMLDKDAKDNNVSHKRKIYEEND 368

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
               R               +           +    + +  + D  F  VV + G    
Sbjct: 369 VSLMRCAFLRNSYTTDSELPKTRLLKWTKENRKKMPIYNTQQE-DKLFCSVVTVDGRKYG 427

Query: 202 QG-MDCSKRAAEQVAAAEVLKREGIW 226
               + +K+ AEQ AA   L   G+ 
Sbjct: 428 SSFWEKNKKWAEQGAALVCLYFLGVI 453


>gi|328787042|ref|XP_393745.3| PREDICTED: tRNA-dihydrouridine synthase 2-like [Apis mellifera]
          Length = 460

 Score = 43.8 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/175 (12%), Positives = 44/175 (25%), Gaps = 8/175 (4%)

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
                + N     +E  L  +F S  + E    +    D     +   + +  +     S
Sbjct: 281 NTKYCIQNILREQQESTLGKKFLSSQTLEQICNLWDLSDYFYLKKKEFEEKGLLGRSQVS 340

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
              +  +            E     +   + +    +                 K     
Sbjct: 341 PMKEDEKQTQLCNKRKILEEEDVILMHCAFLRNNYITDLELPKTVLHKWTQTQRKKMPNY 400

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGIWT 227
             +            F  +V + G        + +K+ AEQ AA   L   G+ +
Sbjct: 401 NTQQKG-------KLFRSIVTVDGRKYGSSFWEKNKKWAEQGAALVCLFSLGLIS 448


>gi|157131542|ref|XP_001655871.1| tRNA-dihydrouridine synthase [Aedes aegypti]
 gi|108871488|gb|EAT35713.1| tRNA-dihydrouridine synthase [Aedes aegypti]
          Length = 461

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 184 DHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225
             D  F  +V++     +    + SK+ AEQ AA   L   GI
Sbjct: 405 HKDKLFRAIVQVGDEKYSSSFWEKSKKYAEQSAALTSLLHLGI 447


>gi|198431249|ref|XP_002129094.1| PREDICTED: similar to Zinc finger RNA-binding protein (hZFR)
           (M-phase phosphoprotein homolog) [Ciona intestinalis]
          Length = 1143

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 1/47 (2%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAA 216
                      G   +  F   + ++       G   SK+ A+  AA
Sbjct: 356 HLRPVYDVQSIGERPEQTFRCELRVNNYKFVGVGEAESKKEAQTEAA 402


>gi|189236895|ref|XP_967977.2| PREDICTED: C3PO protein [Tribolium castaneum]
          Length = 3759

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V+  G   A G   SK+ A+  +A   L + 
Sbjct: 33  FKCTVKAGG-VTACGYGTSKKNAKHESAKNALVKL 66


>gi|148233852|ref|NP_001089264.1| hypothetical protein LOC734311 [Xenopus laevis]
 gi|58399163|gb|AAH89298.1| MGC85120 protein [Xenopus laevis]
          Length = 483

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           + DG  +            R +   K     +         +     +YK+  +SGP H 
Sbjct: 356 FDDGSSDEKDPNKKMRRNLRKILDCKAIDSNQPMNALMRLNQIRPGLQYKLLSQSGPVHA 415

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           P F++ V++ G    +    SK+ A+   A
Sbjct: 416 PVFSMSVDVDGTTH-EASGASKKTAKLHVA 444


>gi|21492487|ref|NP_659606.1| dsRNA-binding PKR inhibitor [Sheeppox virus]
          Length = 177

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/119 (11%), Positives = 27/119 (22%), Gaps = 5/119 (4%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +   +      + S                   D            +            +
Sbjct: 47  YKLHNDGFIFMIRSNPPKWFKK-----NGIDNDDNENNNTKKLNKSFSDTIPYYKIVLWK 101

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +         + +F     Y      G    P F   V ISG+     +  +K+ A+Q 
Sbjct: 102 EKNPCSAINEYCQFTSRDWYINISSCGNGRKPMFLASVIISGIKFFPEIGNTKKEAKQK 160


>gi|115680274|ref|XP_001190439.1| PREDICTED: similar to tRNA-dihydrouridine synthase
           [Strongylocentrotus purpuratus]
 gi|115717831|ref|XP_001201154.1| PREDICTED: similar to tRNA-dihydrouridine synthase
           [Strongylocentrotus purpuratus]
          Length = 499

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 1/61 (1%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224
                               +  F   V +     A      SK+ +EQ AAA   ++ G
Sbjct: 333 EYCHAKKLHPPHYTLEEDIENRVFRSSVIVDDQEYATTLWCTSKKYSEQGAAAVCCQQLG 392

Query: 225 I 225
           +
Sbjct: 393 L 393


>gi|254577996|ref|XP_002494984.1| ZYRO0B00704p [Zygosaccharomyces rouxii]
 gi|238937874|emb|CAR26051.1| ZYRO0B00704p [Zygosaccharomyces rouxii]
          Length = 244

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+ +  TH S +H  +   E+L  LG + L    +     H D    
Sbjct: 81  LVLQCFTHKSFAHGSKPYNEKLNVLGSQFLKYQAAIHSLRHKDQLSP 127


>gi|82469844|gb|ABB77180.1| R2D2 [Drosophila simulans]
          Length = 311

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 5/115 (4%)

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
            +  +   A  + +      +     +     D        +     RD   EL+++   
Sbjct: 47  GNGRSKRDAKHLAAANIMRKIQMLPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVR 106

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAEVL 220
                P  +V  +SG    P F     ++ +        S  K+ A Q AA E+L
Sbjct: 107 HDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAIEML 158



 Score = 39.5 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H     T     T+      D  F   VE+  L  A G   SKR A+ +AAA ++++ 
Sbjct: 11  HEFCAKTNNTPPTYNFIKGEDGGFVCKVELLELE-ALGNGRSKRDAKHLAAANIMRKI 67


>gi|311223111|gb|ADP76634.1| nonstructural protein NSP3 [Human rotavirus C]
 gi|311223115|gb|ADP76636.1| nonstructural protein NSP3 [Human rotavirus C]
          Length = 402

 Score = 43.8 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           D    +T  +++   A A G   SK+ A+++AA ++L + GI
Sbjct: 362 DGSITYTCYMKLE-SAEANGSGRSKKEAKRIAAYDILDQLGI 402


>gi|270005018|gb|EFA01466.1| hypothetical protein TcasGA2_TC007013 [Tribolium castaneum]
          Length = 4051

 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V+  G   A G   SK+ A+  +A   L + 
Sbjct: 33  FKCTVKAGG-VTACGYGTSKKNAKHESAKNALVKL 66



 Score = 39.5 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           D  F      +    + G   +K+ A+Q +A ++L+
Sbjct: 115 DGEFFFKCSFANEE-SIGEGMNKKDAKQDSARKMLE 149


>gi|238576066|ref|XP_002387900.1| hypothetical protein MPER_13150 [Moniliophthora perniciosa FA553]
 gi|215448751|gb|EEB88830.1| hypothetical protein MPER_13150 [Moniliophthora perniciosa FA553]
          Length = 298

 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 17/132 (12%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSI-----------SHSYQESYERLEFLGDR 49
           M +     L K       ++ +  +  TH S+            +      E+ E LGD 
Sbjct: 1   MHSFELPALPKI-----NSKEIERQIFTHRSVYGRPTHIFEDLPNDPNPDNEKFEHLGDS 55

Query: 50  ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD-LASFIRVSSDLRKDVC 108
           +L L+++ LL       + G  +     +V+ +T + +++            +       
Sbjct: 56  VLSLVVTDLLLEMCPGLRVGPSTKIRAMIVANQTLATISQRYKLPHRLSVHPAQAEVLKM 115

Query: 109 SFMTSIQADVVE 120
           S   S     + 
Sbjct: 116 SIHASGMCVSIS 127


>gi|219852808|ref|YP_002467240.1| ribonuclease III [Methanosphaerula palustris E1-9c]
 gi|219547067|gb|ACL17517.1| ribonuclease III [Methanosphaerula palustris E1-9c]
          Length = 160

 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 5/130 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYER----LEFLGDRILGLLISTLLF 60
           +   LE+RI Y F +++  ++ALT  + +       +R    L  LGD ++ LL+   L 
Sbjct: 6   QIEELERRIKYRFIDQAHPQRALTRLAFAGEQHFEDDRDMDALATLGDAVIDLLVIDDLL 65

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               +  +GE++V     V+      +A  LDLA  +                + A+  E
Sbjct: 66  RTGVTR-KGEITVLKVRRVNMSVLRSIAESLDLAPLVFWGKGEETQQVWLSGRVLAECCE 124

Query: 121 SLIAALYLDG 130
           ++I A++LDG
Sbjct: 125 AVIGAVFLDG 134


>gi|190345739|gb|EDK37673.2| hypothetical protein PGUG_01771 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 617

 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 63/214 (29%), Gaps = 17/214 (7%)

Query: 19  NRSLLEKALTHSSISHSY------------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
           N +L ++  TH S                 Q   E+L   G  +L + +  LL   F  A
Sbjct: 152 NTNLRKRVFTHKSYRQISDFLEADSAEEFAQAHNEKLVLHGRSLLNVALLHLLDKKFPKA 211

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +  ++      L S+   +++A   +L+  ++ +          +  +    +  L A  
Sbjct: 212 QAEDIESMKVRLSSSVVLTKMAMGYNLSQHLKHNISKELSNEGKVLVLSTVFLAYLGALF 271

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
                ++    +++K +     +       +   L                       HD
Sbjct: 272 SEGYSMDEICLWIEKLYDPIVAEFDSEHMHSARPLAYSELKFLLDP----HLKFKQSGHD 327

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           P FT            G    K  A  V +   L
Sbjct: 328 P-FTFKAYYRDTVIGIGSHSDKMMARIVTSENAL 360


>gi|171688648|ref|XP_001909264.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944286|emb|CAP70396.1| unnamed protein product [Podospora anserina S mat+]
          Length = 432

 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 3/112 (2%)

Query: 113 SIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
              A+   +++ A+Y   G     +        ++  L+     +    EL      +  
Sbjct: 260 KAHANFARAVVGAVYTHCGRAAAKSFVKAHVLCRELDLERLFAFKHPTLELAMLCAREEF 319

Query: 171 VTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             P  ++   +G     P F V V        +G   +   A   AA   LK
Sbjct: 320 EPPVARLLSETGRLSRTPVFVVGVYSGNDKLGEGQGATLEQARLKAAMHALK 371


>gi|161579135|gb|ABX72055.1| C3PO protein [Tribolium castaneum]
          Length = 117

 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V+  G   A G   SK+ A+  +A   L + 
Sbjct: 15  FKCTVKAGG-VTACGYGTSKKNAKHESAKNALVKL 48


>gi|60476168|gb|AAX21225.1| nonstructural protein 3 [Human rotavirus C]
          Length = 402

 Score = 43.8 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 201 AQGMDCSKRAAEQVAAAEVLKREGI 225
           A G   SK+ A+++AA ++L + GI
Sbjct: 378 AIGSGKSKKEAKRIAAYDILDQLGI 402


>gi|170085983|ref|XP_001874215.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651767|gb|EDR16007.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 199

 Score = 43.4 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 1/69 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE-ISGLAPAQGMDCSKRAAE 212
                          F           SGP H+P +   +     +    G   +K+ A+
Sbjct: 1   MAAHVHLFNNTYQRHFRGAVPRYEYQESGPQHEPYWQCSIYDSQDVLIGVGGGKNKKLAK 60

Query: 213 QVAAAEVLK 221
             AA   ++
Sbjct: 61  DAAADSAIR 69


>gi|46110176|ref|XP_382146.1| hypothetical protein FG01970.1 [Gibberella zeae PH-1]
          Length = 383

 Score = 43.4 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 31/283 (10%), Positives = 64/283 (22%), Gaps = 65/283 (22%)

Query: 2   SALRYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
            + + + L  R+  +  N+     L + L   S   +   +   L FLG   +   +   
Sbjct: 67  ESAKLAALHARLSLS--NKIPLETLARTLIVPSADQNPSYNNSNLAFLGSTFINYHVLEY 124

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL------------------------- 93
           +   +       +     +    E+  Q+AR   +                         
Sbjct: 125 IVCKWPRLPMPIVYEVLRAFAGKESLHQIARRWGVEAAAAPGEEVDPGLLQWAPKDSGMQ 184

Query: 94  --ASFIRVSSDL-------------------------RKDVCSFMTSIQADVVESLI--- 123
               ++R  +                                            S     
Sbjct: 185 TRWGYVRQEAAYTDRFTPRRGISSRVVFDDDFGDVIEEPKTGEDGYKYYQHEAHSSFVQA 244

Query: 124 ----AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
                  +                +Q  + +    +    EL      +    P  ++  
Sbjct: 245 VVGSIYTHAGQDAARDFVKSHVLSRQVDVSAMFQFKLPTRELALLCAREGFEAPIARLES 304

Query: 180 RSGPD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +G     P F V +  S     +G   S   A   A+   LK
Sbjct: 305 ETGRHSRTPVFIVGIYSSSEKLGEGAGASLDLARWKASMNALK 347


>gi|224069354|ref|XP_002302963.1| predicted protein [Populus trichocarpa]
 gi|222844689|gb|EEE82236.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score = 43.4 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P F   +   G++       +K+ AEQ+AA  V+   
Sbjct: 253 PVFISTLVFDGVSYTGDAGRNKKEAEQLAARAVILSL 289



 Score = 43.4 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 11/54 (20%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS------KRAAEQVAAAEVLKRE 223
             T   GP H PRF   V + G         S      ++AAEQ  A   L+  
Sbjct: 158 YQTLNEGPAHMPRFRSTVWVDGARY-----RSQKTFLHRKAAEQDVANLALESI 206


>gi|195497348|ref|XP_002096060.1| GE25279 [Drosophila yakuba]
 gi|194182161|gb|EDW95772.1| GE25279 [Drosophila yakuba]
          Length = 321

 Score = 43.4 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 73/232 (31%), Gaps = 19/232 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRI 50
                +R+G +F   S L++A T  S +   ++                   L   G  I
Sbjct: 67  LFAFSQRLGESFK-VSQLQRAFTEKSFAQREEDRRRQLGIEESDLQMPHNSDLVEKGQHI 125

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
               +   L +              + L+S ET + V+  L     I+ +          
Sbjct: 126 AHAYVEAFLQHQLPKVPNDGHHAITSFLLSTETLAHVSSHLGTKDLIQSTVYP--PSAES 183

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
           +      V+ +L ++  ++        F+     QR L      +D    L+     +  
Sbjct: 184 LAKSLYAVIGALASSSGIEKAFLFVRDFICTQLNQRDLLEVWTPQDPIQLLENICQERKL 243

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              E ++    G +     + V +  +     +G     + A + AA + L+
Sbjct: 244 GEAEPRLLADCGKNTVLGAYQVGIYANRQLLGKGFGEDLKTATETAAIDALQ 295


>gi|111025395|ref|YP_707815.1| exoribonuclease II [Rhodococcus jostii RHA1]
 gi|110824374|gb|ABG99657.1| probable exoribonuclease II [Rhodococcus jostii RHA1]
          Length = 615

 Score = 43.4 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 24/84 (28%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           E    +     +     S        + +  W  A   +          GP H P F   
Sbjct: 391 EAGENWAPIRREVFDWASRAHPEFGPSVVSMWLQAHPDLPRPEIDGDNRGPSHTPVFAAR 450

Query: 193 VEISGLAPAQGMDCSKRAAEQVAA 216
             +  +        SK+ AEQ AA
Sbjct: 451 FRVGQVCGPWATAGSKKRAEQDAA 474



 Score = 41.1 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           +++    +   A      +P   V    G  H P FT  V       A G   +K  A  
Sbjct: 537 QKNPIAWVISHAEHHGHPSP-QWVVRMEGAAHAPVFTCDVRYLDHT-ATGSGTTKNLART 594

Query: 214 VAAAEV 219
            AAA++
Sbjct: 595 AAAADL 600


>gi|322801001|gb|EFZ21782.1| hypothetical protein SINV_04122 [Solenopsis invicta]
          Length = 184

 Score = 43.4 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
               + + +GP H  RF   + I G      G   +K+ A+  AA +
Sbjct: 1   MTAMILYFTGPKHRQRFLCELRIPGFDYVGAGNSTNKKDAQGNAAKD 47


>gi|322704127|gb|EFY95726.1| abhydrolase domain-containing protein [Metarhizium anisopliae ARSEF
           23]
          Length = 340

 Score = 43.4 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 1/104 (0%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
              +  L      H  +S   +  YERLE+LGD  L L+ S+L++  F S   G  S   
Sbjct: 60  KILDPELEATVFLHPGLSDPLRG-YERLEWLGDAYLELIASSLIYQTFTSTPVGRCSQLR 118

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
             L+  +T +Q  RE  L S  ++  DL+KD+     S     +
Sbjct: 119 EILIRNKTLAQYFREYGLESKAQLPGDLKKDISRGRGSSSDKDI 162


>gi|17506341|ref|NP_491200.1| hypothetical protein D1037.1 [Caenorhabditis elegans]
 gi|13384432|gb|AAK21366.1| Hypothetical protein D1037.1 [Caenorhabditis elegans]
          Length = 786

 Score = 43.4 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           E++    +K   Q  +      ++  + + E    +    P +     SG DH   F   
Sbjct: 683 EMSIKQRNKINAQNNVPVDLSNKNPISLIMELCAKRRWNPPSFSC-EESGADHLKMFVWT 741

Query: 193 VEISGLAPAQGMD-CSKRAAEQVAAAEVLKREGIW 226
           + I+ +          K+  + VAA   L+  G+ 
Sbjct: 742 IVINDVEYRPMCGSKQKKEGKAVAAQVALQSLGVL 776


>gi|183986711|ref|NP_001116945.1| adenosine deaminase domain containing 1 (testis-specific) [Xenopus
           (Silurana) tropicalis]
 gi|170284982|gb|AAI61180.1| adad1 protein [Xenopus (Silurana) tropicalis]
          Length = 584

 Score = 43.4 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F     I G+    GM  +K+ A+  AA   L   
Sbjct: 128 FAFCAVIDGIEYKTGMGQNKKEAKANAAQLALDEL 162


>gi|156550653|ref|XP_001604965.1| PREDICTED: similar to maleless protein [Nasonia vitripennis]
          Length = 1256

 Score = 43.4 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219
                      T        +GP H  RF   + ++G    A G   +K+ A+  A+ + 
Sbjct: 6   AFLHQWCAKNSTEPSFEVRPTGPKHRQRFLCELRVNGYDYVAVGNSTNKKDAQGNASRDF 65

Query: 220 ---LKREG 224
              L R G
Sbjct: 66  VNYLVRIG 73


>gi|159473675|ref|XP_001694959.1| dicer-like protein [Chlamydomonas reinhardtii]
 gi|158276338|gb|EDP02111.1| dicer-like protein [Chlamydomonas reinhardtii]
          Length = 1927

 Score = 43.4 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 20/92 (21%)

Query: 15   YAFANRSLLEKALTHSSI------------------SHSYQESYERLEFLGDRILGLLIS 56
            Y F + +L   ALTH S                          Y+ LEFLGD ++GLL S
Sbjct: 1650 YQFHDPALALCALTHVSWPVPPVSSSGKGLDAGAGSGGGSGGHYQLLEFLGDAVVGLLAS 1709

Query: 57   TLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88
              L+ +       ++S+    LV  +T +   
Sbjct: 1710 --LWAYSLGGSPRDMSMTREMLVRNDTLAACC 1739


>gi|22595727|gb|AAN02759.1| putative PKR inhibitor [lumpy skin disease virus]
          Length = 177

 Score = 43.4 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/119 (11%), Positives = 27/119 (22%), Gaps = 5/119 (4%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +   +      + S                   D            +            +
Sbjct: 47  YKLHNDGFIFMIRSNPPKWFKK-----NGIDNDDNENNDTKKLNKSFSDTIPYYKIVLWK 101

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +         + +F     Y      G    P F   V ISG+     +  +K+ A+Q 
Sbjct: 102 EKNPCSAINEYCQFTSRDWYINISSCGNGRKPMFLASVIISGIKFFPEIGNTKKEAKQK 160


>gi|148912911|ref|YP_001293225.1| hypothetical protein GTPV_gp030 [Goatpox virus Pellor]
          Length = 177

 Score = 43.4 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/119 (11%), Positives = 27/119 (22%), Gaps = 5/119 (4%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +   +      + S                   D            +            +
Sbjct: 47  YKLHNDGFIFMIRSNPPKWFKK-----NGIDNNDNDNNDTKKLNKSFSDTIPYYKIVLWK 101

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +         + +F     Y      G    P F   V ISG+     +  +K+ A+Q 
Sbjct: 102 EKNPCSAINEYCQFTSRDWYINISSCGNGRKPMFLASVIISGIKFFPEIGNTKKEAKQK 160


>gi|302881925|ref|XP_003039873.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256720740|gb|EEU34160.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 383

 Score = 43.4 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 3/126 (2%)

Query: 2   SALRYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + + + L  R+  +       L +AL   S   +   +   L FLG   +   +   L 
Sbjct: 67  ESAKLAALHARLSLSSKIPLETLARALVVPSADKNPSFNNSNLAFLGSTFINYHVLEYLV 126

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +       L     +    E+  Q+AR   +      +     D        +A  ++
Sbjct: 127 CKWPRLPMSLLYEALRAYAGKESLHQIARRWGVE--AAAAPGEEVDPGLLQWKPEASGLQ 184

Query: 121 SLIAAL 126
           +    +
Sbjct: 185 TRWGYV 190



 Score = 41.5 bits (95), Expect = 0.091,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 3/132 (2%)

Query: 93  LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW--KQRALKS 150
               + +     +    +     A  V++++ A+Y   G +    FV  +   +   + S
Sbjct: 216 FGDMVAMPKTGEEGYKYYQHEAYASFVQAVVGAIYTHCGRDATRDFVKSHILSRDVDVSS 275

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKR 209
               +    EL      +    P  ++   +G     P F V V        +G   S  
Sbjct: 276 MFQFQLPTRELAMLCAREGFEAPIARLESETGRLSRTPVFVVGVYSGPEKLGEGSGPSLD 335

Query: 210 AAEQVAAAEVLK 221
            A   A+   LK
Sbjct: 336 IARWNASMNALK 347


>gi|149247898|ref|XP_001528336.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448290|gb|EDK42678.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 389

 Score = 43.4 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           P+F   V +      +G+  S + A+  AA
Sbjct: 319 PQFLAGVFVGNEKLGEGIGASLKEAQTRAA 348


>gi|195996409|ref|XP_002108073.1| predicted protein [Trichoplax adhaerens]
 gi|190588849|gb|EDV28871.1| predicted protein [Trichoplax adhaerens]
          Length = 258

 Score = 43.4 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 1/72 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYK-VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              +  + L   +                S   ++P+F         A  +G   +KR A
Sbjct: 1   MNVNPVSILYMLSQTLHVHLTFDCAPLHNSSSKNNPKFLGSFRFGEYAYGKGEGSNKRTA 60

Query: 212 EQVAAAEVLKRE 223
           +  AA + L + 
Sbjct: 61  KVHAAVDALIKL 72


>gi|189182361|gb|ACD81882.1| dicer-like nuclease 1 [Chlamydomonas reinhardtii]
          Length = 2236

 Score = 43.4 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 20/92 (21%)

Query: 15   YAFANRSLLEKALTHSSI------------------SHSYQESYERLEFLGDRILGLLIS 56
            Y F + +L   ALTH S                          Y+ LEFLGD ++GLL S
Sbjct: 1842 YQFHDPALALCALTHVSWPVPPVSSSGKGLDAGAGSGGGSGGHYQLLEFLGDAVVGLLAS 1901

Query: 57   TLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88
              L+ +       ++S+    LV  +T +   
Sbjct: 1902 --LWAYSLGGSPRDMSMTREMLVRNDTLAACC 1931


>gi|169665428|gb|ACA63429.1| dicer-like 1 protein [Chlamydomonas reinhardtii]
          Length = 2243

 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 20/92 (21%)

Query: 15   YAFANRSLLEKALTHSSI------------------SHSYQESYERLEFLGDRILGLLIS 56
            Y F + +L   ALTH S                          Y+ LEFLGD ++GLL S
Sbjct: 1842 YQFHDPALALCALTHVSWPVPPVSSSGKGLDAGAGSGGGSGGHYQLLEFLGDAVVGLLAS 1901

Query: 57   TLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88
              L+ +       ++S+    LV  +T +   
Sbjct: 1902 --LWAYSLGGSPRDMSMTREMLVRNDTLAACC 1931


>gi|194862942|ref|XP_001970198.1| GG10497 [Drosophila erecta]
 gi|190662065|gb|EDV59257.1| GG10497 [Drosophila erecta]
          Length = 322

 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
                              RD    L+++        P  +V  +SG  + P F     +
Sbjct: 86  QDCETMTMGDPDEALININRDMLKALRDYCVRHEMPLPSIEVVQQSGSPNAPEFVACCSV 145

Query: 196 SGLAPAQGMDCS--KRAAEQVAAAEVL 220
           + +        S  K+ A Q AA E+L
Sbjct: 146 ASIVR---YGKSDKKKDARQRAAIEML 169



 Score = 38.8 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 T     T+      D  +   V++  L  A G   SKR A+ +AA  +L++ 
Sbjct: 18  QEFCAKTKNIPPTYNFIDGEDGGYVCKVDLMEL-MAYGNGRSKRDAKHLAAVNILRKI 74


>gi|292628574|ref|XP_001342694.3| PREDICTED: tRNA-dihydrouridine synthase 2-like [Danio rerio]
          Length = 504

 Score = 43.4 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 53/179 (29%), Gaps = 6/179 (3%)

Query: 48  DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
           D+++   I+  +    +         +           +          I     + +  
Sbjct: 266 DQVMQEYITYAVRYDNNPFNTKYCLCQMLRDRVESPFGKRLHAAQTNQEICEVFGMTELF 325

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
                 +++    + + A             V     +   +    +   K  L EW+  
Sbjct: 326 NKTTAELESR--RASLQASEDLSETPELEDDVVIMPVRFERRDYPPQITPKMFLLEWSRK 383

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225
           +    P Y+   RS    D  F   V ++     +   + SK+ AEQ AA   L+  G+
Sbjct: 384 EKLEQPVYETEQRSQ---DRGFQSTVIVADKKYRSTLWEKSKKFAEQAAALVCLRTLGL 439


>gi|326918955|ref|XP_003205750.1| PREDICTED: adenosine deaminase domain-containing protein 1-like
           [Meleagris gallopavo]
          Length = 491

 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F +   + G+    G+  +K+ ++Q AA   L   
Sbjct: 66  FGISAVLDGVYYKTGLGRNKKESKQCAAKLALDEL 100


>gi|242005452|ref|XP_002423579.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
 gi|212506727|gb|EEB10841.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
          Length = 409

 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 186 DPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGIW 226
           D  F  +V ++G        + +KR AEQ AA   L   G+ 
Sbjct: 356 DKLFQSIVTVNGKNYGSSYWEKNKRWAEQSAAIVGLVNLGLL 397


>gi|82469834|gb|ABB77175.1| R2D2 [Drosophila melanogaster]
          Length = 311

 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 T     T+   P  D  +   VE+  +  A G   SKR A+ +AA+ +L++ 
Sbjct: 11  QEFCARTQINLPTYSFIPGEDGGYVCKVELLEIE-AIGNGRSKRDAKHLAASNILRKI 67



 Score = 39.9 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211
            RD   EL+++   +    P  ++  +SG    P F     ++ +        S  K+ A
Sbjct: 93  NRDMVKELRDYCVRREMPLPSIEIVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDA 149

Query: 212 EQVAAAEVL 220
            Q AA E+L
Sbjct: 150 RQRAAIEML 158


>gi|82469836|gb|ABB77176.1| R2D2 [Drosophila melanogaster]
          Length = 311

 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 T     T+   P  D  +   VE+  +  A G   SKR A+ +AA+ +L++ 
Sbjct: 11  QEFCARTQINLPTYSFIPGEDGGYVCKVELLEIE-AIGNGRSKRDAKHLAASNILRKI 67



 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211
            RD   EL+++   +    P  +V  +SG    P F     ++ +        S  K+ A
Sbjct: 93  NRDMVKELRDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDA 149

Query: 212 EQVAAAEVL 220
            Q AA E+L
Sbjct: 150 RQRAAIEML 158


>gi|328712008|ref|XP_001944312.2| PREDICTED: dosage compensation regulator-like [Acyrthosiphon pisum]
          Length = 1430

 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 42/98 (42%), Gaps = 1/98 (1%)

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AA+  D  I+ A + ++++ +   LK+  ++     +       +         T ++G 
Sbjct: 156 AAVCGDWTIDNAKSHLNQFIQSNKLKNIDYKYSCNPKTFLHEWCEKNNLEPQFKTKQAGS 215

Query: 184 DHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVL 220
           +  PRF   V I+G      G   + + A++ A+ + L
Sbjct: 216 NRKPRFICEVIITGHDYIGIGNSANIKYAQENASKDFL 253


>gi|242073788|ref|XP_002446830.1| hypothetical protein SORBIDRAFT_06g023330 [Sorghum bicolor]
 gi|241938013|gb|EES11158.1| hypothetical protein SORBIDRAFT_06g023330 [Sorghum bicolor]
          Length = 879

 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F+  V I G    +G+  +++ A+  AA   L+  
Sbjct: 718 QFSTEVLIFGEKVGEGVGKTRKEAQWQAADTSLRNL 753


>gi|293334879|ref|NP_001167729.1| hypothetical protein LOC100381417 [Zea mays]
 gi|223943645|gb|ACN25906.1| unknown [Zea mays]
          Length = 178

 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           TV V + G+      +  K+ A+++AA   L
Sbjct: 38  TVEVLVDGIQIGVAQNPQKKMAQKLAARNAL 68



 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMDCSKRA 210
           +  L +    +    P+Y+     GP H  RF   V ++            + M  S + 
Sbjct: 96  RQTLNDICLRRQWPMPQYRCINEGGPAHAKRFVYAVRVNTSDSGWTDECIGEPM-PSVKK 154

Query: 211 AEQVAAAEVLKREG 224
           A+  AA  +L+   
Sbjct: 155 AKDSAAVLLLELLN 168


>gi|195356071|ref|XP_002044505.1| GM13239 [Drosophila sechellia]
 gi|194131807|gb|EDW53741.1| GM13239 [Drosophila sechellia]
          Length = 101

 Score = 43.4 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E         P Y+     G  H+  FT+   +       G   +K+ A+++AA  +  R
Sbjct: 39  EMCVQLRWPPPLYETEAEVGLPHERVFTIACSVLEHRV-MGKGTTKKIAKRLAAHSMFVR 97

Query: 223 E 223
            
Sbjct: 98  L 98


>gi|328766294|gb|EGF76349.1| hypothetical protein BATDEDRAFT_92769 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 334

 Score = 43.4 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 44/148 (29%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           S +      ++RLEFLGD +L  L    L+        G LS     LV  +  + V+ +
Sbjct: 6   SGTGKLGSMFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 65

Query: 91  LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
           + L  +IR +    +       +     + S  +                 +W +     
Sbjct: 66  IGLVKYIRHTDMTMEAAIGRFATWVQGYLASESSTSLPISTSATQIASARMFWNKGNTAP 125

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
                  ++ L              +  
Sbjct: 126 KTAGDVYESMLGAVFVDSQFDIHCVQSM 153


>gi|158289196|ref|XP_310950.4| AGAP000185-PA [Anopheles gambiae str. PEST]
 gi|157018938|gb|EAA06512.4| AGAP000185-PA [Anopheles gambiae str. PEST]
          Length = 631

 Score = 43.4 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            ++GP H P FT+ V + G     G   SK+
Sbjct: 23  SQTGPVHAPIFTISVVVDGQKF-VGTGPSKK 52


>gi|332246794|ref|XP_003272537.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform
           2 [Nomascus leucogenys]
          Length = 662

 Score = 43.4 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V VE+ G+    G   SK  A+Q AA   L
Sbjct: 214 FSVSVELDGVVCPAGTANSKTEAKQQAALSAL 245


>gi|332246792|ref|XP_003272536.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform
           1 [Nomascus leucogenys]
          Length = 580

 Score = 43.4 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V VE+ G+    G   SK  A+Q AA   L
Sbjct: 142 FSVSVELDGVVCPAGTANSKTEAKQQAALSAL 173


>gi|159123457|gb|EDP48576.1| hypothetical protein AFUB_080110 [Aspergillus fumigatus A1163]
          Length = 620

 Score = 43.4 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 1  MSALRYSTL-EKRIGYAFANRSLLEKALTHS----SISHSYQESYERLEFLGDRILGLLI 55
          M+  + +   + R+GY F N ++L  ALT +    +   + +    RL  LG+ ++  L+
Sbjct: 1  MATTKDARFVQDRLGYRFKNEAILRLALTAAGKGGAEDGANKRGNSRLAHLGNFLMQFLL 60

Query: 56 STLLF 60
          + + F
Sbjct: 61 AWIGF 65


>gi|159121927|gb|EDP47059.1| hypothetical protein AFUB_102760 [Aspergillus fumigatus A1163]
          Length = 603

 Score = 43.4 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 1  MSALRYSTL-EKRIGYAFANRSLLEKALTHS----SISHSYQESYERLEFLGDRILGLLI 55
          M+  + +   + R+GY F N ++L  ALT +    +   + +    RL  LG+ ++  L+
Sbjct: 1  MATTKDARFVQDRLGYRFKNEAILRLALTAAGKGGAEDGANKRGNSRLAHLGNFLMQFLL 60

Query: 56 STLLF 60
          + + F
Sbjct: 61 AWIGF 65


>gi|114663874|ref|XP_001151022.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform
           2 [Pan troglodytes]
          Length = 583

 Score = 43.4 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V VE+ G+    G   SK  A+Q AA   L
Sbjct: 145 FSVSVELDGVVCPAGTANSKTEAKQQAALSAL 176


>gi|114663872|ref|XP_001150748.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform
           1 [Pan troglodytes]
          Length = 665

 Score = 43.4 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V VE+ G+    G   SK  A+Q AA   L
Sbjct: 217 FSVSVELDGVVCPAGTANSKTEAKQQAALSAL 248


>gi|114663876|ref|XP_511140.2| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
          Length = 567

 Score = 43.4 bits (100), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V VE+ G+    G   SK  A+Q AA   L
Sbjct: 145 FSVSVELDGVVCPAGTANSKTEAKQQAALSAL 176


>gi|297799968|ref|XP_002867868.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313704|gb|EFH44127.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 854

 Score = 43.0 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 20/42 (47%)

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            ++  +   +++   +    +   K+ +EQ AA   L++ GI
Sbjct: 34  SNECLYRCHLQLPEFSVVSNVFKRKKDSEQSAAELALEKLGI 75


>gi|15150473|ref|NP_150468.1| LSDV034 putative PKR inhibitor [Lumpy skin disease virus NI-2490]
 gi|15149045|gb|AAK84995.1| LSDV034 putative PKR inhibitor [Lumpy skin disease virus NI-2490]
 gi|22595569|gb|AAN02602.1| putative PKR inhibitor [Lumpy skin disease virus NW-LW]
          Length = 177

 Score = 43.0 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/119 (11%), Positives = 28/119 (23%), Gaps = 5/119 (4%)

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +   +      + S              +    D            +            +
Sbjct: 47  YKLHNDGFIFMIRSNPPKWFKK-----NSIDNDDNENNDTKKLNKSFSDTIPYYKIVLWK 101

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +         + +F     Y      G    P F   V ISG+     +  +K+ A+Q 
Sbjct: 102 EKNPCSAINEYCQFTSRDWYINISSCGNGRKPMFLASVIISGIKFFPEIGNTKKEAKQK 160


>gi|138854|sp|P27586|NSP3_ROTPC RecName: Full=Non-structural protein 3; Short=NSP3; Contains:
           RecName: Full=p38; Contains: RecName: Full=p8
 gi|333308|gb|AAA47087.1| NS34 protein [Porcine rotavirus C]
          Length = 402

 Score = 43.0 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           G A A     SK+ A+++AA ++L + G+
Sbjct: 374 GSAEAVAKGRSKKEAKRIAAKDILDQIGL 402


>gi|149511238|ref|XP_001519380.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 268

 Score = 43.0 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 106 KIFYVQLTVGNDEFF-GEGKTRQAARHNAAMKALRAL 141



 Score = 37.6 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            F V + +     A     S + A+  AA   L
Sbjct: 1   MFAVQLTLGEQLWA-AEGSSIKKAQHAAATRAL 32


>gi|146420287|ref|XP_001486100.1| hypothetical protein PGUG_01771 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 617

 Score = 43.0 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 65/219 (29%), Gaps = 22/219 (10%)

Query: 19  NRSLLEKALTHSSISHSY------------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
           N +L ++  TH S                 Q   E+L   G  +L + +  LL   F  A
Sbjct: 152 NTNLRKRVFTHKSYRQISDFLEADSAEEFAQAHNEKLVLHGRSLLNVALLHLLDKKFPKA 211

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +  ++ +    L S+   +++A   +L+  ++ +          +  +    +  L A  
Sbjct: 212 QAEDIELMKVRLSSSVVLTKMAMGYNLSQHLKHNISKELSNEGKVLVLLTVFLAYLGALF 271

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
                ++    +++K +     +       +   L                       HD
Sbjct: 272 SEGYSMDEICLWIEKLYDPIVAEFDSEHMHSARPLAYSELKFLLDP----HLKFKQSGHD 327

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAA-----EQVAAAEVL 220
           P FT            G    K  A     E   A + L
Sbjct: 328 P-FTFKAYYRDTVIGIGSHSDKMMARIVTLENALADKAL 365


>gi|311265930|ref|XP_003130894.1| PREDICTED: double-stranded RNA-specific editase B2-like [Sus
           scrofa]
          Length = 899

 Score = 43.0 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y+   ++GP H P F V V+++GL   +G    K+  +   A   L+
Sbjct: 407 QYRTVSQTGPVHAPVFAVAVDVNGLTF-EGTGPIKKKLKMRRAELALR 453


>gi|82469818|gb|ABB77167.1| R2D2 [Drosophila sechellia]
          Length = 289

 Score = 43.0 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 5/115 (4%)

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
            +  +   A  + +      +     +    +D        +     RD   EL+++   
Sbjct: 25  GNGRSKRDAKHLAAANIMRKIQILPGMQSMRMDLSLGDLGEEITNLNRDMLKELRDYCVR 84

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAEVL 220
                P  +V  +SG    P F     ++ +        S  K+ A Q AA E+L
Sbjct: 85  HDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAIEML 136



 Score = 38.8 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           D  F   VE+  +  A G   SKR A+ +AAA ++++  I 
Sbjct: 9   DGGFVCKVELLEIE-ALGNGRSKRDAKHLAAANIMRKIQIL 48


>gi|325181112|emb|CCA15525.1| double stranded RNA binding putative [Albugo laibachii Nc14]
          Length = 320

 Score = 43.0 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            ++   +        +   V+ +G A A G   SKR A+ +AA   L   
Sbjct: 136 CFQFETKEDERGQKWYHCRVDENGQALAHGKGISKRVAKALAAQSALSLL 185


>gi|17863006|gb|AAL39980.1| SD08006p [Drosophila melanogaster]
          Length = 460

 Score = 43.0 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 39/156 (25%), Gaps = 6/156 (3%)

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
               RF    + +   ++    D     +       +           + +         
Sbjct: 295 PRGKRFLQCQTLQQICEIWELGDYCRRKQRELKTMGNSGRAEVEPPEALAKRQKLEDAAI 354

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
              +     + ++               KT+L   A       P Y+         D  F
Sbjct: 355 AITDEYDGIICRHMPFLRSTYPSDNHLPKTQLYVHAVKTGKSPPAYETQQC-----DKLF 409

Query: 190 TVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224
             +    G   +    + +K+ AEQ AA   L   G
Sbjct: 410 RSICTYDGQRFSSSFWEKNKKQAEQGAALVALLHLG 445


>gi|45549423|ref|NP_572950.2| CG1434 [Drosophila melanogaster]
 gi|45446950|gb|AAF48360.2| CG1434 [Drosophila melanogaster]
 gi|162944734|gb|ABY20436.1| GH10289p [Drosophila melanogaster]
          Length = 473

 Score = 43.0 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 39/156 (25%), Gaps = 6/156 (3%)

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
               RF    + +   ++    D     +       +           + +         
Sbjct: 308 PRGKRFLQCQTLQQICEIWELGDYCRRKQRELKTMGNSGRAEVEPPEALAKRQKLEDAAI 367

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
              +     + ++               KT+L   A       P Y+         D  F
Sbjct: 368 AITDEYDGIICRHMPFLRSTYPSDNHLPKTQLYVHAVKTGKSPPAYETQQC-----DKLF 422

Query: 190 TVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224
             +    G   +    + +K+ AEQ AA   L   G
Sbjct: 423 RSICTYDGQRFSSSFWEKNKKQAEQGAALVALLHLG 458


>gi|255970532|gb|ACU45742.1| dicer-like protein 1 [Sporothrix schenckii]
          Length = 1021

 Score = 43.0 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%)

Query: 32  ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
                  +YERLE LGD  L +  +  L+       E E  V    ++  +     A E+
Sbjct: 785 FQAGMGRNYERLELLGDSFLKMASTIALYTLAPDKNEFEYHVERMCMICNKNLFNNALEI 844

Query: 92  DLASFIR 98
            L  +IR
Sbjct: 845 GLEEYIR 851



 Score = 40.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 14   GYAFANRSLLEKALTHSSI--SHSYQESYERL 43
            GY F    LL  A+ H S    +    SY+RL
Sbjct: 990  GYTFTYPRLLRCAVMHPSYPRVYEQLPSYQRL 1021


>gi|328771050|gb|EGF81090.1| hypothetical protein BATDEDRAFT_23768 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 380

 Score = 43.0 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 46/148 (31%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           S +      ++RLEFLGD +L  L+   L+        G LS     LV  +  + V+ +
Sbjct: 52  SGTGKLGSMFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQ 111

Query: 91  LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
           + L  +IR +    +      T+     + S  +                 +W +     
Sbjct: 112 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARMFWNKGNTAP 171

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
                  ++ L              +  
Sbjct: 172 KTAGDVYESMLGAVFVDSQFDIHCVQSM 199


>gi|222619325|gb|EEE55457.1| hypothetical protein OsJ_03618 [Oryza sativa Japonica Group]
          Length = 351

 Score = 43.0 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223
             T R GP H  RF  VV + G A        + + AE  AA   L   
Sbjct: 105 YQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSL 153



 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAP--AQGMDCSKRAAEQVAAAEVL 220
           P       +GP H P F   V ++G+     +    S + A  +AA   L
Sbjct: 17  PPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNIAAKAAL 66


>gi|218189128|gb|EEC71555.1| hypothetical protein OsI_03907 [Oryza sativa Indica Group]
          Length = 1030

 Score = 43.0 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223
             T R GP H  RF  VV + G A        + + AE  AA   L   
Sbjct: 105 YQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSL 153


>gi|148679660|gb|EDL11607.1| mCG11408 [Mus musculus]
          Length = 243

 Score = 43.0 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F+V  ++ GL    G   SK  A+Q AA   L+
Sbjct: 40  FSVCADLDGLVCPAGTGSSKLEAKQQAALSALQ 72


>gi|254675158|ref|NP_083704.1| adenosine deaminase domain-containing protein 2 [Mus musculus]
 gi|187952769|gb|AAI37981.1| Adad2 protein [Mus musculus]
          Length = 561

 Score = 43.0 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F+V  ++ GL    G   SK  A+Q AA   L+
Sbjct: 123 FSVCADLDGLVCPAGTGSSKLEAKQQAALSALQ 155


>gi|75251129|sp|Q5N8Z0|DRB1_ORYSJ RecName: Full=Double-stranded RNA-binding protein 1; AltName:
           Full=dsRNA-binding protein 1
 gi|56785214|dbj|BAD82066.1| putative dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
          Length = 441

 Score = 43.0 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223
             T R GP H  RF  VV + G A        + + AE  AA   L   
Sbjct: 105 YQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSL 153



 Score = 38.4 bits (87), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAP--AQGMDCSKRAAEQVAAAEV 219
           P       +GP H P F   V ++G+     +    S + A  +AA   
Sbjct: 17  PPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNIAAKAA 65


>gi|81905359|sp|Q9D5P4|ADAD2_MOUSE RecName: Full=Adenosine deaminase domain-containing protein 2
 gi|12853260|dbj|BAB29697.1| unnamed protein product [Mus musculus]
          Length = 478

 Score = 43.0 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F+V  ++ GL    G   SK  A+Q AA   L+
Sbjct: 40  FSVCADLDGLVCPAGTGSSKLEAKQQAALSALQ 72


>gi|82469802|gb|ABB77159.1| R2D2 [Drosophila lucipennis]
          Length = 299

 Score = 43.0 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
                 +     RD   EL+++        P  ++  +SG  + P F     ++ +    
Sbjct: 71  MNDLCEELTNLNRDMLKELRDYCVRHDMPLPSIEIVQQSGTPNAPEFVACCTVASIVR-- 128

Query: 203 GMDCS--KRAAEQVAAAEVL 220
               S  K+ A Q AA E+L
Sbjct: 129 -YGKSDKKKDARQRAAIEML 147



 Score = 39.5 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           D  +   V +  +  + G   SKR A+ +AAA +L++ 
Sbjct: 17  DGGYVCKVVLMEIE-SYGNGRSKRDAKHLAAANILRKI 53


>gi|50555369|ref|XP_505093.1| YALI0F06732p [Yarrowia lipolytica]
 gi|49650963|emb|CAG77900.1| YALI0F06732p [Yarrowia lipolytica]
          Length = 207

 Score = 43.0 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           SLL + LTH S +       E+L F+G +   + + +  
Sbjct: 88  SLLLQVLTHKSFAGGLPSHNEKLAFVGRKFFPVSVLSHN 126


>gi|330945754|gb|EGH47188.1| ribonuclease III [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 164

 Score = 43.0 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            ++  LF  F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       S
Sbjct: 7   WLAEALFERFPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRES 66

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGV 171
           I AD +E+LI A+YLD G+E A   V  +              +D KT LQE+  ++   
Sbjct: 67  ILADALEALIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACE 126

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCS 207
            P Y+V    G  H   F V  EI+ L   ++G   S
Sbjct: 127 LPRYEVVDIQGEPHCRTFFVECEINLLNEKSRGQGVS 163


>gi|293336145|ref|NP_001169453.1| hypothetical protein LOC100383324 [Zea mays]
 gi|224029475|gb|ACN33813.1| unknown [Zea mays]
          Length = 459

 Score = 43.0 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 181 SGPDHDPRFTVVVEISGLAPA---QGMDCSKRAAEQVAAAEVLKRE 223
            GP H P F   V ++G   +   +G   S + A  +AA       
Sbjct: 25  EGPAHAPLFRATVVVNGERFSSRDEGE-KSLKEAYNLAAMAAFDNL 69



 Score = 41.8 bits (96), Expect = 0.075,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 18/68 (26%), Gaps = 1/68 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
                 +    K G           G  H P F   V I G          + + AE VA
Sbjct: 94  PYKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVA 153

Query: 216 AAEVLKRE 223
           A   L   
Sbjct: 154 AKVALMSL 161



 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 189 FTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKREG 224
           F   VEI G+    G    +K+ AE  AA    +   
Sbjct: 209 FVSTVEIRGVTF-HGKPGNTKKQAEMNAAKSAFEHFK 244


>gi|221114347|ref|XP_002163095.1| PREDICTED: similar to SON DNA-binding protein isoform F (predicted)
           [Hydra magnipapillata]
          Length = 629

 Score = 43.0 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
             A  +    +   + L E    +    P+Y   F  G   +  F + V ++ +     +
Sbjct: 545 PPAPVANINGKHPVSALAELCVKRKLGIPDYTCVFEHGLAQNKNFLMKVTVANVDYQASV 604

Query: 205 DC-SKRAAEQVAAAEVLKREG 224
              +K+ A+  AA   L+  G
Sbjct: 605 ASPNKKHAKANAAIVALRAMG 625


>gi|195339009|ref|XP_002036114.1| r2d2 [Drosophila sechellia]
 gi|194129994|gb|EDW52037.1| r2d2 [Drosophila sechellia]
          Length = 311

 Score = 43.0 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 5/115 (4%)

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
            +  +   A  + +      +     +    +D        +     RD   EL+++   
Sbjct: 47  GNGRSKRDAKHLAAANIMRKIQILPGMQSMRMDLSLGDLGEEITNLNRDMLKELRDYCVR 106

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAEVL 220
                P  +V  +SG    P F     ++ +        S  K+ A Q AA E+L
Sbjct: 107 HDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAIEML 158



 Score = 39.9 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           H     T     T+      D  F   VE+  +  A G   SKR A+ +AAA ++++  I
Sbjct: 11  HEFCAKTKNTPPTYNFINGEDGGFVCKVELLEIE-ALGNGRSKRDAKHLAAANIMRKIQI 69

Query: 226 W 226
            
Sbjct: 70  L 70


>gi|195577381|ref|XP_002078549.1| r2d2 [Drosophila simulans]
 gi|82469850|gb|ABB77183.1| R2D2 [Drosophila simulans]
 gi|194190558|gb|EDX04134.1| r2d2 [Drosophila simulans]
          Length = 311

 Score = 43.0 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 5/115 (4%)

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
            +  +   A  + +      +     +     D        +     RD   EL+++   
Sbjct: 47  GNGRSKRDAKHLAAANIMRKIQMLPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVR 106

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAEVL 220
                P  +V  +SG    P F     ++ +        S  K+ A Q AA E+L
Sbjct: 107 HDMPLPRIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAIEML 158



 Score = 39.5 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H     T     T+      D  F   VE+  L  A G   SKR A+ +AAA ++++ 
Sbjct: 11  HEFCAKTNNTPPTYNFIKGEDGGFVCKVELLELE-ALGNGRSKRDAKHLAAANIMRKI 67


>gi|328769139|gb|EGF79183.1| hypothetical protein BATDEDRAFT_25727 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 380

 Score = 43.0 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 37/91 (40%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           S +      ++RLEFLGD +L  L    L+        G LS     LV  +  + V+ +
Sbjct: 52  SGTGKLGSIFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQ 111

Query: 91  LDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           + L  +IR +    +      T+     + S
Sbjct: 112 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLAS 142


>gi|255545984|ref|XP_002514052.1| conserved hypothetical protein [Ricinus communis]
 gi|223547138|gb|EEF48635.1| conserved hypothetical protein [Ricinus communis]
          Length = 412

 Score = 43.0 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKRE 223
             T + GP H+P F   V ++ +         +++AAEQ A    L   
Sbjct: 34  YETIKEGPSHEPSFRSTVIVNDIRYDSLPGFLNRKAAEQSAVEVALMEL 82


>gi|82469840|gb|ABB77178.1| R2D2 [Drosophila simulans]
          Length = 311

 Score = 43.0 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 5/115 (4%)

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
            +  +   A  + +      +     +     D        +     RD   EL+++   
Sbjct: 47  GNGRSKRDAKHLAAANIMRKIQMLPGMQSMTQDLSLGDLGEEMTNLNRDMLKELRDYCVR 106

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAEVL 220
                P  +V  +SG    P F     ++ +        S  K+ A Q AA E+L
Sbjct: 107 HDMPLPXIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAIEML 158



 Score = 39.5 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H     T     T+      D  F   VE+  L  A G   SKR A+ +AAA ++++ 
Sbjct: 11  HEFCAKTNNTPPTYNFIKGEDGGFVCKVELLELE-ALGNGRSKRDAKHLAAANIMRKI 67


>gi|242045250|ref|XP_002460496.1| hypothetical protein SORBIDRAFT_02g029450 [Sorghum bicolor]
 gi|241923873|gb|EER97017.1| hypothetical protein SORBIDRAFT_02g029450 [Sorghum bicolor]
          Length = 123

 Score = 43.0 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 18/61 (29%), Gaps = 7/61 (11%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAEQVAAAEVLKR 222
                     V    GPDH PRF   V  +          S     R AE  AA   L R
Sbjct: 1   MYKNQLLTSYVCTPEGPDHTPRFRAAVTFNSETF---EGPSGCTTLRQAEHAAAEVTLAR 57

Query: 223 E 223
            
Sbjct: 58  L 58


>gi|328767757|gb|EGF77805.1| hypothetical protein BATDEDRAFT_27056 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 380

 Score = 43.0 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 46/148 (31%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           S +      ++RLEFLGD +L  L+   L+        G LS     LV  +  + V+ +
Sbjct: 52  SGTGKLGSMFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQ 111

Query: 91  LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
           + L  +IR +    +      T+     + S  +                 +W +     
Sbjct: 112 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARMFWNKGNTAP 171

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
                  ++ L              +  
Sbjct: 172 KTAGDVYESMLGAVFVDSQFDIHCVQSM 199


>gi|297734269|emb|CBI15516.3| unnamed protein product [Vitis vinifera]
          Length = 1057

 Score = 43.0 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 186  DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +  F   V  +GL  A     SK+ AE+ AAA+ L+
Sbjct: 991  NNMFRSTVIFNGLQFAGQPCSSKKLAEKDAAAKALE 1026


>gi|225456053|ref|XP_002277625.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1157

 Score = 43.0 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 186  DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +  F   V  +GL  A     SK+ AE+ AAA+ L+
Sbjct: 1091 NNMFRSTVIFNGLQFAGQPCSSKKLAEKDAAAKALE 1126


>gi|198426942|ref|XP_002131661.1| PREDICTED: similar to Zfr protein [Ciona intestinalis]
          Length = 1004

 Score = 43.0 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-----GLAPAQGMDCSKRAAEQVAAAE 218
               +   T         GP+H   F   ++++      +  A     +K+ A  V A  
Sbjct: 366 NQFCQREHTSPDFKHETHGPEHARIFVCELKLNVSSVQKVLLASERGSNKKQATAVCALS 425

Query: 219 VLKRE 223
           ++++ 
Sbjct: 426 MIRQL 430


>gi|224097989|ref|XP_002191539.1| PREDICTED: transcription factor NRF [Taeniopygia guttata]
          Length = 720

 Score = 43.0 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 402 NRSWRCQVYLQDHCLAEGFG-TKKTSKHAAAEEALKIL 438


>gi|242775084|ref|XP_002478573.1| 60S ribosomal protein L3 [Talaromyces stipitatus ATCC 10500]
 gi|218722192|gb|EED21610.1| 60S ribosomal protein L3 [Talaromyces stipitatus ATCC 10500]
          Length = 384

 Score = 43.0 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 47/161 (29%), Gaps = 4/161 (2%)

Query: 65  SAKEGELSVRFNSLVSAE-TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                      +S+V  +       +  +         DL            +  V++++
Sbjct: 188 RPNTHWRKSIASSVVHGDIFGEPDLKTKNPKYVRPQLPDLESLPGVTAEKATSTFVQAVV 247

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
             +YL  G   A  F  ++   R L   K         +L    H +    P  K+   +
Sbjct: 248 GGIYLHAGRPAAKRFFKEHIVSRHLDMSKLFSFTQPARDLATLCHRENIEPPVAKIISET 307

Query: 182 GPD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           G     P F V V        +G   S   A   AA   LK
Sbjct: 308 GRHSRHPVFNVGVFSGQDKLGEGSGASLIEARTRAAVAALK 348


>gi|168057245|ref|XP_001780626.1| HEN1 protein [Physcomitrella patens subsp. patens]
 gi|162667894|gb|EDQ54512.1| HEN1 protein [Physcomitrella patens subsp. patens]
          Length = 951

 Score = 43.0 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 187 PRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           P F   + +  G          K+ AEQ AA   L++ GI
Sbjct: 40  PMFACKLHLPDGTTIQSNSFRRKKDAEQDAALHALQKMGI 79



 Score = 39.1 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 47/201 (23%), Gaps = 22/201 (10%)

Query: 40  YERLEFL------GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
            ER  FL      GD IL  + ST   +         LS     ++              
Sbjct: 302 NERASFLVGHAIDGDAILATVGSTWTSDGRCIYDNFTLSCFHRLMLGRN---------PW 352

Query: 94  ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
            ++      L       + + +A    +   +L  D   +   +                
Sbjct: 353 GAYKLSRRSLLVADLPKVYTCRAHWQGASPKSLLADFCHQHRLSEAQYTCNDTQESCNST 412

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-------LAPAQGMDC 206
                 E+                    G      F   V +            + G   
Sbjct: 413 AGGHSLEIGHTKGLMSMNNNGISKQGNPGSSKQGPFQCKVRVGSAGNKAPTYFQSDGFFR 472

Query: 207 SKRAAEQVAAAEVLKREGIWT 227
           S+  A Q AA   L   G W+
Sbjct: 473 SRNDAIQSAALNALLSYGRWS 493


>gi|297485148|ref|XP_002694788.1| PREDICTED: testis nuclear RNA-binding protein-like [Bos taurus]
 gi|296478213|gb|DAA20328.1| testis nuclear RNA-binding protein-like [Bos taurus]
          Length = 597

 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V VE+ G+    G   SK  A+Q AA   L
Sbjct: 159 FSVSVELDGVVCPPGTANSKLEAKQQAALSAL 190


>gi|297461712|ref|XP_873139.3| PREDICTED: adenosine deaminase domain containing 2 [Bos taurus]
          Length = 597

 Score = 42.6 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V VE+ G+    G   SK  A+Q AA   L
Sbjct: 159 FSVSVELDGVVCPPGTANSKLEAKQQAALSAL 190


>gi|320170569|gb|EFW47468.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 871

 Score = 42.6 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALT----HSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +   +E  +G  F   + L  ALT    H        ++Y+ L+F+GD +L   +   L 
Sbjct: 703 KLREVEAILGVRFNEPAWLAMALTADNSHP-AILPVSKTYQGLDFVGDTVLKYSVQKFLM 761

Query: 61  N 61
           +
Sbjct: 762 H 762



 Score = 36.4 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKA-LT 28
             + +E  IGY F N +LL  A LT
Sbjct: 392 DVARIETAIGYKFKNPALLATAVLT 416


>gi|242092788|ref|XP_002436884.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
 gi|241915107|gb|EER88251.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
          Length = 243

 Score = 42.6 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 1/42 (2%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRA 210
                  V    GP H P FT  V ++      G    SK+ 
Sbjct: 14  HCPKPEFVHTCEGPVHSPVFTATVTLNEKKFCAGEGTPSKKE 55


>gi|328770010|gb|EGF80052.1| hypothetical protein BATDEDRAFT_24776 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 380

 Score = 42.6 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           S +      ++RLEFLGD +L  L+   L+        G LS     LV  +  + V+ +
Sbjct: 52  SGTGKLGSMFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQ 111

Query: 91  LDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           + L  +IR +    +       +     + S
Sbjct: 112 IGLVKYIRHTDMTMEAAIGRFATWVQGYLAS 142


>gi|322782637|gb|EFZ10516.1| hypothetical protein SINV_13804 [Solenopsis invicta]
          Length = 401

 Score = 42.6 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 186 DPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGIW 226
           +  F  VV + G        + +K+ AEQ AA   L   GI 
Sbjct: 348 NKLFCSVVTVDGRKYGSSFWEKNKKWAEQGAALVCLYFLGII 389


>gi|149411995|ref|XP_001513167.1| PREDICTED: similar to LRRG00118 [Ornithorhynchus anatinus]
          Length = 576

 Score = 42.6 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P F     + G+    G+  +K+ A   AA   L   
Sbjct: 126 PYFAFCAVVDGIQYKTGLGQNKKEARSNAAKLALDEL 162


>gi|238497846|ref|XP_002380158.1| RNA helicase/RNAse III, putative [Aspergillus flavus NRRL3357]
 gi|220693432|gb|EED49777.1| RNA helicase/RNAse III, putative [Aspergillus flavus NRRL3357]
          Length = 1339

 Score = 42.6 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            FA+   +  A+   S       +Y+R EFLGD IL  ++S  LF    +  EG L+    
Sbjct: 925  FADIQHVITAIMAPSAQ--GVTNYQRYEFLGDSILKYIVSCQLFFQNLNWPEGFLTEGRT 982

Query: 77   SLVSAETCSQVARELDLASFIR 98
            ++V     ++ A +  L SFI 
Sbjct: 983  TIVQNPRLTRAALDAGLDSFII 1004


>gi|17533821|ref|NP_494501.1| hypothetical protein F39E9.7 [Caenorhabditis elegans]
          Length = 136

 Score = 42.6 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +   +L E+A   +   P ++            F +          +G   SK  A++ A
Sbjct: 34  NPVAQLNEYAQKFYKKYPTFEFVKEQAVGKHRVFIIQATFEDKTL-EGRGPSKMIAKRAA 92

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 93  AEAILESIG 101


>gi|221129317|ref|XP_002161468.1| PREDICTED: similar to SON DNA binding protein [Hydra
           magnipapillata]
          Length = 173

 Score = 42.6 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
             A  +    +   + L E    +    P+Y   F  G   +  F + V ++ +     +
Sbjct: 89  PPAPVANINGKHPVSALAELCVKRKLGIPDYTCVFEHGLAQNKNFLMKVTVANVDYQASV 148

Query: 205 DC-SKRAAEQVAAAEVLKREG 224
              +K+ A+  AA   L+  G
Sbjct: 149 ASPNKKHAKANAAIVALRAMG 169


>gi|169607859|ref|XP_001797349.1| hypothetical protein SNOG_06991 [Phaeosphaeria nodorum SN15]
 gi|111064522|gb|EAT85642.1| hypothetical protein SNOG_06991 [Phaeosphaeria nodorum SN15]
          Length = 843

 Score = 42.6 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 12/98 (12%)

Query: 6   YSTLEKRIGYAFANRSLLEKAL-----THSSI----SHSYQESYERLEFLGDRILGLLIS 56
              LE R+GY F NR    +AL      HS       +    +  RL  LGDR+L L + 
Sbjct: 102 LGALEVRLGYTFQNRMTGIEALKVTGNVHSLYYDGAVYETGMNN-RLALLGDRVLSLALC 160

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94
            + F        G  ++  +  VS    +    +L L 
Sbjct: 161 EIWF--QTDHPNGGYALMSSQTVSRAALAVTGHKLGLH 196


>gi|195434340|ref|XP_002065161.1| GK14818 [Drosophila willistoni]
 gi|194161246|gb|EDW76147.1| GK14818 [Drosophila willistoni]
          Length = 303

 Score = 42.6 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 5/149 (3%)

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
                   +        +D      V      D+ +F         + L A   L    +
Sbjct: 10  LQEFCAKTKNGPPEYNYIDGEDGGFVCKASLLDMEAFGNGRSKRDAKHLAAVNILRKIRK 69

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
           + G          + +     RD   EL+++        P  ++  +SG  + P F    
Sbjct: 70  LPGCSEALNDTDDSNELTNLNRDMLKELRDYCVRHEMPLPVIEIVQQSGSPNAPEFVACC 129

Query: 194 EISGLAPAQGMDCS--KRAAEQVAAAEVL 220
            ++ +        S  K+ A Q AA E+L
Sbjct: 130 TVASITR---YGKSDKKKDARQRAAIEML 155



 Score = 37.6 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           D  F     +  +  A G   SKR A+ +AA  +L++ 
Sbjct: 31  DGGFVCKASLLDME-AFGNGRSKRDAKHLAAVNILRKI 67


>gi|158339696|ref|YP_001520703.1| hypothetical protein AM1_A0044 [Acaryochloris marina MBIC11017]
 gi|158309937|gb|ABW31553.1| hypothetical protein AM1_A0044 [Acaryochloris marina MBIC11017]
          Length = 157

 Score = 42.6 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 48/133 (36%), Gaps = 6/133 (4%)

Query: 90  ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149
           +L    ++  + D    +   +   +   +      +++    +      +    Q   +
Sbjct: 18  QLGFLDYLYPNIDPEDALIRILERARNRAIRKAEQQVHILHPRQEEAEQPETSPDQPISQ 77

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             +  ++   +LQE    +    P Y+ +  S       F  +V+  GL    G   SK+
Sbjct: 78  VDEQVKNPIGQLQELCQKQQISLPRYEFSEISEG-----FRCLVQSMGLQ-GVGEGASKK 131

Query: 210 AAEQVAAAEVLKR 222
            A+  AA  +LKR
Sbjct: 132 KAKMGAAEMLLKR 144


>gi|328774462|gb|EGF84499.1| hypothetical protein BATDEDRAFT_22607 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 334

 Score = 42.6 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 45/148 (30%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           S +      ++RLEFLGD +L  L    L+        G LS     LV  +  + V+ +
Sbjct: 6   SGTGKLGSMFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 65

Query: 91  LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
           + L  +IR +    +      T+     + S  +                 +W +     
Sbjct: 66  IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARMFWNKGNTAP 125

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
                  ++ L              +  
Sbjct: 126 KTAGDVYESMLGAVFVDSQFDIHCVQSM 153


>gi|218675756|gb|AAI69284.2| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [synthetic construct]
          Length = 413

 Score = 42.6 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V + G   A GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64


>gi|150456419|ref|NP_031868.2| ATP-dependent RNA helicase A [Mus musculus]
          Length = 1383

 Score = 42.6 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V + G   A GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64


>gi|157821633|ref|NP_001100654.1| ATP-dependent RNA helicase A [Rattus norvegicus]
 gi|149058390|gb|EDM09547.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 (predicted) [Rattus
           norvegicus]
          Length = 1174

 Score = 42.6 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V + G   A GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64


>gi|148707490|gb|EDL39437.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_b [Mus
           musculus]
          Length = 1384

 Score = 42.6 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V + G   A GM  S  K+ A+  AA +
Sbjct: 13  CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 65


>gi|148707489|gb|EDL39436.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_a [Mus
           musculus]
          Length = 1174

 Score = 42.6 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V + G   A GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64


>gi|116283679|gb|AAH33911.1| Dhx9 protein [Mus musculus]
          Length = 198

 Score = 42.6 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V + G   A GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64


>gi|159163361|pdb|1WHQ|A Chain A, Solution Structure Of The N-Terminal Dsrbd From
           Hypothetical Protein Bab28848
          Length = 99

 Score = 42.6 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V + G   A GM  S  K+ A+  AA +
Sbjct: 16  CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 68


>gi|58047678|gb|AAH89159.1| Dhx9 protein [Mus musculus]
          Length = 459

 Score = 42.6 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V + G   A GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64


>gi|2688940|gb|AAC05301.1| RNA helicase A [Mus musculus]
          Length = 161

 Score = 42.6 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V + G   A GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64


>gi|74202542|dbj|BAE24846.1| unnamed protein product [Mus musculus]
          Length = 735

 Score = 42.6 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V + G   A GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64


>gi|71153505|sp|O70133|DHX9_MOUSE RecName: Full=ATP-dependent RNA helicase A; AltName: Full=DEAH box
           protein 9; Short=mHEL-5; AltName: Full=Nuclear DNA
           helicase II; Short=NDH II
          Length = 1380

 Score = 42.6 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V + G   A GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64


>gi|12850774|dbj|BAB28848.1| unnamed protein product [Mus musculus]
          Length = 265

 Score = 42.6 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V + G   A GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNAARD 64


>gi|313224320|emb|CBY20109.1| unnamed protein product [Oikopleura dioica]
          Length = 348

 Score = 42.6 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 21/193 (10%), Positives = 54/193 (27%), Gaps = 13/193 (6%)

Query: 32  ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
            +    ++      LG+       + L      +             ++ ET        
Sbjct: 11  YARENNKN----WTLGEEWDATPCTLLSEIAGKAGGLKSQLDYAFRQMTRETIEDNTHSQ 66

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
            +       + +     +        +    +     + G+       +K       +S 
Sbjct: 67  HIFECQCSFAGMITSGSNTKKKNAKHLASEYMLRSLQERGMVKGLRVPEK---PFLGESD 123

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRA 210
               +  ++L E+   +    P +            +F +   I+ L     GM  SK+ 
Sbjct: 124 DNFDNPTSKLFEFVQIRGIEKPVFWDDMYGT-----QFKMTCTIASLKLESFGMCSSKKQ 178

Query: 211 AEQVAAAEVLKRE 223
           A++ A   +L++ 
Sbjct: 179 AKREACRHMLEKL 191


>gi|328769566|gb|EGF79610.1| hypothetical protein BATDEDRAFT_26082 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 334

 Score = 42.6 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 45/148 (30%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           S +      ++RLEFLGD +L  L    L+        G LS     LV  +  + V+ +
Sbjct: 6   SGTGKLGSIFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 65

Query: 91  LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
           + L  +IR +    +      T+     + S  +                 +W +     
Sbjct: 66  IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTSLPISTSATQIASARLFWNKGNTAP 125

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
                  ++ L              +  
Sbjct: 126 KTAGDVYESMLGAVFVDSQFDIHCVQSM 153


>gi|158296416|ref|XP_316826.3| AGAP000856-PA [Anopheles gambiae str. PEST]
 gi|157015286|gb|EAA12065.3| AGAP000856-PA [Anopheles gambiae str. PEST]
          Length = 469

 Score = 42.6 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 186 DPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225
           D  F   +   G        + +KR AEQ AA   L + G+
Sbjct: 415 DKLFRATIRFDGQRYTSSFWEKNKRYAEQAAALVCLLKRGV 455


>gi|238878780|gb|EEQ42418.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 404

 Score = 42.6 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           P+F   V +      +G+  S + A+  A+   L
Sbjct: 333 PQFLAGVFVGNDKIGEGIGSSLKEAQIRASINSL 366


>gi|68476619|ref|XP_717602.1| likely mitochondrial ribosomal protein MRPL3 [Candida albicans
           SC5314]
 gi|68476766|ref|XP_717528.1| likely mitochondrial ribosomal protein MRPL3 [Candida albicans
           SC5314]
 gi|46439242|gb|EAK98562.1| likely  mitochondrial ribosomal protein MRPL3 [Candida albicans
           SC5314]
 gi|46439319|gb|EAK98638.1| likely  mitochondrial ribosomal protein MRPL3 [Candida albicans
           SC5314]
          Length = 404

 Score = 42.6 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           P+F   V +      +G+  S + A+  A+   L
Sbjct: 333 PQFLAGVFVGNDKIGEGIGSSLKEAQIRASINSL 366


>gi|324502539|gb|ADY41117.1| Protein SON [Ascaris suum]
          Length = 1051

 Score = 42.6 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQ 213
            +   + L E    K    P++     SGP ++ RFT    ++G+         SK+  + 
Sbjct: 973  KHPVSMLMELCSKKHWPPPQFTCIE-SGPSNNRRFTWKAVVNGVEYEPIASSASKKTGKA 1031

Query: 214  VAAAEVLKREGI 225
               A VL+  G+
Sbjct: 1032 QVCAVVLQSLGL 1043


>gi|39965953|ref|XP_365151.1| hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145015378|gb|EDJ99914.1| predicted protein [Magnaporthe oryzae 70-15]
          Length = 147

 Score = 42.6 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 13/148 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHS------SISH--SYQESYERLEFLGDRILGLLIST 57
              ++ +IG+ F N+ L ++ALT +      S +    + +    L  +GD IL + +  
Sbjct: 5   IEGIQTKIGHTFGNQRLCDEALTAAGVTLRMSATSQVHHLDGNAALALIGDGILQIGVG- 63

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L +      +GE S R  ++VS +  + +     L   +  +        +     +A 
Sbjct: 64  -LRSRGLGESKGEASDRLKNIVSNKNLASIFDTAQLGPHVIGNPSQW---GAISAKTKAT 119

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQ 145
           VVE+L+ A+Y+D GIE A   +     +
Sbjct: 120 VVEALLGAVYVDAGIEAAFAVMRHLQIE 147


>gi|296087161|emb|CBI33535.3| unnamed protein product [Vitis vinifera]
          Length = 333

 Score = 42.6 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 1/79 (1%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
                 +            +    +  +      T   G  H P+F   V + G      
Sbjct: 9   CPAPSSTRLPEHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSP 68

Query: 204 MDCS-KRAAEQVAAAEVLK 221
              S ++AAEQ  A   L+
Sbjct: 69  NTFSHRKAAEQDVARLALE 87



 Score = 42.2 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           P F   +  +G+        +K+ AEQ+AA  V+
Sbjct: 136 PVFVSSLVFNGVTYTGDAGRNKKEAEQLAARTVI 169


>gi|90077408|dbj|BAE88384.1| unnamed protein product [Macaca fascicularis]
          Length = 437

 Score = 42.6 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 5/78 (6%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-----GMD 205
                    + +   + +           + GPDH+  F   + I      +     G  
Sbjct: 173 HGNWTLENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFARGHG 232

Query: 206 CSKRAAEQVAAAEVLKRE 223
            +K+ A Q  A  ++++ 
Sbjct: 233 SNKKLAAQSCALSLVRQL 250



 Score = 41.8 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V++ G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64


>gi|50897083|dbj|BAD34722.1| Dicer-related RNase III protein Dcr1p [Tetrahymena thermophila]
          Length = 1450

 Score = 42.6 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 10   EKRIGYAFANRSLLEKALTHSSISHS 35
            +  I Y F N  LL++  THSS    
Sbjct: 1157 QNSINYKFNNIGLLQQVFTHSSYKQD 1182


>gi|126306309|ref|XP_001366536.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 9
           [Monodelphis domestica]
          Length = 1256

 Score = 42.6 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V + G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPTYEIRAVGNKNRQKFMCEVRVEGFNY-TGMGNSTNKKDAQSNAARD 64


>gi|255719938|ref|XP_002556249.1| KLTH0H08624p [Lachancea thermotolerans]
 gi|238942215|emb|CAR30387.1| KLTH0H08624p [Lachancea thermotolerans]
          Length = 238

 Score = 42.6 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 7   STLEKRIGYAFANRSL----LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
             + K++  A  N SL    + + LTH S +H  +   E+L  LG + L    S  
Sbjct: 63  ENVRKQLNLAKHNISLSDDIILQCLTHKSFAHGSKPYNEKLAALGMQFLKYHTSVH 118


>gi|17510279|ref|NP_493554.1| hypothetical protein Y54E5A.6 [Caenorhabditis elegans]
 gi|3925277|emb|CAA21662.1| C. elegans protein Y54E5A.6, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 436

 Score = 42.6 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 5/72 (6%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQ 213
              K  L ++          Y+V  R     D RF     I       G+   + R AEQ
Sbjct: 358 PTPKMVLHDYCVETKIPKATYEVVKRD----DKRFVATACIGDKKYRSGIGQPNLRMAEQ 413

Query: 214 VAAAEVLKREGI 225
           VAA   L    I
Sbjct: 414 VAALAALHGMNI 425


>gi|328766179|gb|EGF76236.1| hypothetical protein BATDEDRAFT_28693 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 334

 Score = 42.2 bits (97), Expect = 0.047,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 45/148 (30%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           S +      ++RLEFLGD +L  L+   L+        G LS     LV  +  + V+ +
Sbjct: 6   SGTGKLGSIFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 65

Query: 91  LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
           + L  +IR +    +       +     + S  +                 +W +     
Sbjct: 66  IGLVKYIRHTDMTMEAAIGRFAAWVQGYLASESSTSLPISTSATQIASARLFWNKGNTAP 125

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
                  ++ L              +  
Sbjct: 126 KTAGDVYESMLGAVFVDSQFDIHCVQSM 153


>gi|315046170|ref|XP_003172460.1| hypothetical protein MGYG_05052 [Arthroderma gypseum CBS 118893]
 gi|311342846|gb|EFR02049.1| hypothetical protein MGYG_05052 [Arthroderma gypseum CBS 118893]
          Length = 636

 Score = 42.2 bits (97), Expect = 0.047,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 1  MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
          MS+      +E  +GY F ++ LL KALT +    +  +   RL  LG  ++  L+  + 
Sbjct: 1  MSSKTSIRPVEDIVGYTFKSKPLLLKALTAAGSELNDYDGNRRLAQLGTALVEFLLVYIG 60

Query: 60 FNHFDSAKE 68
          +        
Sbjct: 61 YRQNVPRDH 69


>gi|317149047|ref|XP_001823093.2| RNAse III [Aspergillus oryzae RIB40]
          Length = 155

 Score = 42.2 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 9/135 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKAL-THSSIS---HSYQESYERLEFLGDRILGLLISTLLF 60
           R   +E+ I Y F N + + +AL T  S++       + ++ L  LGD  L L+++   +
Sbjct: 11  RIQLIEQIINYTFTNPATIHEALRTPGSMAILTPHRLDGHKDLAQLGDAALRLVLAKDGY 70

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                   G+++   +   S    ++   +  L  +I V+             + A  VE
Sbjct: 71  QAHA--TRGQINDTHSGKASNAFLARTGFQKGLDRYIYVNPS---QGGIVSDKVMATTVE 125

Query: 121 SLIAALYLDGGIEVA 135
           +++ A+Y+D G ++ 
Sbjct: 126 AILGAVYIDSGEDIP 140


>gi|307206632|gb|EFN84611.1| Double-stranded RNA-specific editase Adar [Harpegnathos saltator]
          Length = 294

 Score = 42.2 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 176 KVTFRSGPDH--DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           + TF   P H  +  + V  E+ G     G   SK  A Q AA   LK  
Sbjct: 58  QFTFPETPGHVSNSLYLVHAELDGKTY-VGQGLSKPLARQAAAENALKAL 106


>gi|195471419|ref|XP_002088002.1| r2d2 [Drosophila yakuba]
 gi|82469854|gb|ABB77185.1| R2D2 [Drosophila yakuba]
 gi|82469858|gb|ABB77187.1| R2D2 [Drosophila yakuba]
 gi|82469862|gb|ABB77189.1| R2D2 [Drosophila yakuba]
 gi|82469864|gb|ABB77190.1| R2D2 [Drosophila yakuba]
 gi|82469868|gb|ABB77192.1| R2D2 [Drosophila yakuba]
 gi|194174103|gb|EDW87714.1| r2d2 [Drosophila yakuba]
          Length = 321

 Score = 42.2 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211
            RD   EL+++        P  ++  +SG  + P F     ++ +        S  K+ A
Sbjct: 103 NRDMLRELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDA 159

Query: 212 EQVAAAEVL 220
            Q AA E+L
Sbjct: 160 RQRAAIEML 168


>gi|82469856|gb|ABB77186.1| R2D2 [Drosophila yakuba]
 gi|82469866|gb|ABB77191.1| R2D2 [Drosophila yakuba]
          Length = 321

 Score = 42.2 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211
            RD   EL+++        P  ++  +SG  + P F     ++ +        S  K+ A
Sbjct: 103 NRDMLRELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDA 159

Query: 212 EQVAAAEVL 220
            Q AA E+L
Sbjct: 160 RQRAAIEML 168


>gi|82469860|gb|ABB77188.1| R2D2 [Drosophila yakuba]
          Length = 321

 Score = 42.2 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211
            RD   EL+++        P  ++  +SG  + P F     ++ +        S  K+ A
Sbjct: 103 NRDMLRELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDA 159

Query: 212 EQVAAAEVL 220
            Q AA E+L
Sbjct: 160 RQRAAIEML 168


>gi|62088582|dbj|BAD92738.1| nuclear RNase III Drosha variant [Homo sapiens]
          Length = 432

 Score = 42.2 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
           L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 330 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 360


>gi|46205475|ref|ZP_00209888.1| hypothetical protein Magn03001534 [Magnetospirillum
          magnetotacticum MS-1]
          Length = 52

 Score = 42.2 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 6  YSTLEKRIGYAFANRSLLEKALTHSS 31
             LE RIG+ FA+ +LL  ALTH S
Sbjct: 24 LEVLEARIGHVFADPTLLPLALTHVS 49


>gi|82469816|gb|ABB77166.1| R2D2 [Drosophila santomea]
          Length = 309

 Score = 42.2 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211
            RD   EL+++        P  ++  +SG  + P F     ++ +        S  K+ A
Sbjct: 91  NRDMLKELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDA 147

Query: 212 EQVAAAEVL 220
            Q AA E+L
Sbjct: 148 RQRAAIEML 156



 Score = 38.0 bits (86), Expect = 0.94,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           D  +   V++  +  A G   SKR A+ +AA  +L++ 
Sbjct: 26  DGGYVCKVDLMEVE-AYGNGRSKRDAKHLAAVNILRKI 62


>gi|82469822|gb|ABB77169.1| R2D2 [Drosophila takahashii]
          Length = 304

 Score = 42.2 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211
            RD   EL+++        P  ++  +SG  + P F     ++ +        S  K+ A
Sbjct: 86  NRDMLKELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDA 142

Query: 212 EQVAAAEVL 220
            Q AA E+L
Sbjct: 143 RQRAAIEML 151



 Score = 40.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           D  +   V +  +  A G   SKR A+ +AAA +L++ 
Sbjct: 21  DGGYVCKVVLMEIE-AYGNGRSKRDAKHLAAANILRKI 57


>gi|82469810|gb|ABB77163.1| R2D2 [Drosophila paralutea]
          Length = 306

 Score = 42.2 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211
            RD   EL+++        P  ++  +SG  + P F     ++ +        S  K+ A
Sbjct: 88  NRDMLKELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDA 144

Query: 212 EQVAAAEVL 220
            Q AA E+L
Sbjct: 145 RQRAAIEML 153



 Score = 39.5 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           D  +   V +  +  + G   SKR A+ +AAA +L++ 
Sbjct: 23  DGGYVCKVVLMEIE-SYGNGRSKRDAKHLAAANILRKI 59


>gi|82469820|gb|ABB77168.1| R2D2 [Drosophila teissieri]
          Length = 321

 Score = 42.2 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211
            RD   EL+++        P  ++  +SG  + P F     ++ +        S  K+ A
Sbjct: 103 NRDMLKELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDA 159

Query: 212 EQVAAAEVL 220
            Q AA E+L
Sbjct: 160 RQRAAIEML 168



 Score = 38.0 bits (86), Expect = 0.94,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           D  +   V++  +  A G   SKR A+ +AA  +L++ 
Sbjct: 38  DGGYVCKVDLMEVE-AYGNGRSKRDAKHLAAVNILRKI 74


>gi|82469812|gb|ABB77164.1| R2D2 [Drosophila prostipennis]
          Length = 301

 Score = 42.2 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211
            RD   EL+++        P  ++  +SG  + P F     ++ +        S  K+ A
Sbjct: 83  NRDMLKELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDA 139

Query: 212 EQVAAAEVL 220
            Q AA E+L
Sbjct: 140 RQRAAIEML 148



 Score = 39.5 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           D  +   V +  +  + G   SKR A+ +AAA +L++ 
Sbjct: 18  DGGYVCKVVLMEIE-SYGNGRSKRDAKHLAAANILRKI 54


>gi|321463658|gb|EFX74672.1| hypothetical protein DAPPUDRAFT_324075 [Daphnia pulex]
          Length = 119

 Score = 42.2 bits (97), Expect = 0.051,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 5  RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRI 50
          R   LE+ + Y F +++LL +AL    ++     +Y +    GD  
Sbjct: 35 RLEKLEEILNYEFHSKNLLLEALI---LNEDKNSNYNKDTCQGDSW 77


>gi|238494382|ref|XP_002378427.1| RNAse III, putative [Aspergillus flavus NRRL3357]
 gi|220695077|gb|EED51420.1| RNAse III, putative [Aspergillus flavus NRRL3357]
          Length = 155

 Score = 42.2 bits (97), Expect = 0.051,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKAL-THSSIS---HSYQESYERLEFLGDRILGLLISTLLF 60
           R   +E+ I Y F N + + +AL T  S++       + ++ L  LGD  L L+++   +
Sbjct: 11  RIQLIEQIINYTFTNPATIHEALRTPGSMAILTPHRLDGHKDLAQLGDAALRLVLAKDGY 70

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                   G++    +   S    ++   +  L  +I V+             + A  VE
Sbjct: 71  QAHA--TRGQIDDTHSGKASNAFLARTGFQKGLDRYIYVNPS---QGGIVSDKVMATTVE 125

Query: 121 SLIAALYLDGGIEVA 135
           +++ A+Y+D G ++ 
Sbjct: 126 AILGAVYIDSGEDIP 140


>gi|321463676|gb|EFX74690.1| hypothetical protein DAPPUDRAFT_251609 [Daphnia pulex]
          Length = 282

 Score = 42.2 bits (97), Expect = 0.051,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 45/143 (31%), Gaps = 5/143 (3%)

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
            V  +  +Q    L+    I  SS+  +        + AD  E+LI AL  D   E    
Sbjct: 84  FVDHQNKNQHLFSLEKELVIISSSEGDRVFDIDYPKVYADAFETLIGALLRDCEREDKVI 143

Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
                     +            LQ     +     + +     G      F V++++  
Sbjct: 144 RKVVLNLMGDVIVKFHNNIPVCPLQRVNQNRIKPEFKEEKNLPDG-----TFHVILKVKN 198

Query: 198 LAPAQGMDCSKRAAEQVAAAEVL 220
           L    G   S ++A+  AA   +
Sbjct: 199 LQSFHGSGPSMKSAKTAAAKLAI 221


>gi|313226819|emb|CBY21964.1| unnamed protein product [Oikopleura dioica]
          Length = 816

 Score = 42.2 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 3/66 (4%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRA 210
               + K  L  W   +         T    P     F  ++   G      G   SK+ 
Sbjct: 34  NTNMEPKAWLYAWLGFRHIRPTYSWQTMGERPS--QSFKCILSAEGFKEKGTGTAQSKKE 91

Query: 211 AEQVAA 216
           A+  AA
Sbjct: 92  AQSQAA 97


>gi|195448673|ref|XP_002071763.1| GK10156 [Drosophila willistoni]
 gi|194167848|gb|EDW82749.1| GK10156 [Drosophila willistoni]
          Length = 458

 Score = 42.2 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 186 DPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
           D  F  V    G   +    + +K+ AEQ AA   L   G
Sbjct: 404 DKLFRAVCLFDGQRFSSTFWEKNKKQAEQGAALVALLHMG 443


>gi|296231401|ref|XP_002761128.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 3
           [Callithrix jacchus]
          Length = 458

 Score = 42.2 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAE 212
           +   K  L EW   +    P Y+   R     D  F+ +V ++     +   D SK+ AE
Sbjct: 332 QITPKMCLLEWCRREKLPQPMYETVQR---PIDRLFSSIVTVAEQKYQSTLWDKSKKLAE 388

Query: 213 QVAAAEVLKREGI 225
           Q AA   L+ +G+
Sbjct: 389 QAAAIVCLRSQGL 401


>gi|296231397|ref|XP_002761126.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 1
           [Callithrix jacchus]
 gi|296231399|ref|XP_002761127.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 2
           [Callithrix jacchus]
          Length = 493

 Score = 42.2 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAE 212
           +   K  L EW   +    P Y+   R     D  F+ +V ++     +   D SK+ AE
Sbjct: 367 QITPKMCLLEWCRREKLPQPMYETVQR---PIDRLFSSIVTVAEQKYQSTLWDKSKKLAE 423

Query: 213 QVAAAEVLKREGI 225
           Q AA   L+ +G+
Sbjct: 424 QAAAIVCLRSQGL 436


>gi|149711170|ref|XP_001495912.1| PREDICTED: similar to mitochondrial ribosomal protein L44 [Equus
           caballus]
          Length = 332

 Score = 42.2 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 67/236 (28%), Gaps = 21/236 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48
                 R+   F+   LL+ A  +S    S                   E    L   G 
Sbjct: 72  IQAFGHRLQETFS-LDLLKTAFVNSCYIKSEEAKREKLGIEKEAVLLNLEDNRELSEQGS 130

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
                 ++  L   F       L      L   E    VAR L +      +        
Sbjct: 131 SFSQTCLTQFLEEAFPDLPTEGLQSLVGFLTGEEVVCHVARNLAVEQLTLSAEFPVPP-- 188

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
           + +      VV +L+ +            F+      + L       +    L E    +
Sbjct: 189 TVLQRTFFAVVGALLQSSGAGRAALFIRDFLITQMTGKELFEIWKIINPMGLLVEELKKR 248

Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 249 NIPAPESRLTRQSGSTTALPLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 304


>gi|2961456|gb|AAC05725.1| RNA helicase A [Mus musculus]
          Length = 1380

 Score = 42.2 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                          G  +  +F   V + G      G   +K+ A+  AA +
Sbjct: 12  CGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYRGMGNSTNKKDAQSNAARD 64


>gi|291001343|ref|XP_002683238.1| predicted protein [Naegleria gruberi]
 gi|284096867|gb|EFC50494.1| predicted protein [Naegleria gruberi]
          Length = 393

 Score = 42.2 bits (97), Expect = 0.054,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 45/139 (32%), Gaps = 6/139 (4%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS------TLLFNHFDSAKEGELSV 73
           ++LL +++TH+S       S ERL F+G  +L ++++       ++  +    +      
Sbjct: 133 QTLLLRSVTHASYGTGKVRSQERLSFIGSFVLNMVLTEIISQKYMVNQNNCGRENFNTVN 192

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              S+ +  +           +     ++   +  + +      +          D  IE
Sbjct: 193 LIKSIYNNRSFLAFIVANQYWNLSNQYNNKTVENDTKLNKSLNQICTKYNITDLNDNIIE 252

Query: 134 VAGTFVDKYWKQRALKSGK 152
           V               S K
Sbjct: 253 VDNEHYTLRVVGWNEMSFK 271


>gi|256080282|ref|XP_002576411.1| tRNA-dihydrouridine synthase [Schistosoma mansoni]
 gi|238661678|emb|CAZ32648.1| tRNA-dihydrouridine synthase, putative [Schistosoma mansoni]
          Length = 492

 Score = 42.2 bits (97), Expect = 0.054,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 45/179 (25%), Gaps = 4/179 (2%)

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
            I  +L            +           ++  T +     +   S    S  +     
Sbjct: 298 AIWNMLDVYDHEMSKRLERLKNHHHHHQFTLNNSTINCNQEIISSPSISISSDTILIPEK 357

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
                 +     + I  +  D  I        +          +F  D  T  ++     
Sbjct: 358 RSRV--EELSSNTTIVLVNNDNDITGVKINNLEEIVLSIPYERRFWPDHGTSPKQILREH 415

Query: 169 FGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225
             +       + +  D D R F   V + G          SK+ AEQ A    L   GI
Sbjct: 416 CKLLKWDSPKYETIEDRDKRSFFSTVLVDGRRYRNTSACKSKKYAEQAAVLVCLHVLGI 474


>gi|169605473|ref|XP_001796157.1| hypothetical protein SNOG_05760 [Phaeosphaeria nodorum SN15]
 gi|111065704|gb|EAT86824.1| hypothetical protein SNOG_05760 [Phaeosphaeria nodorum SN15]
          Length = 159

 Score = 42.2 bits (97), Expect = 0.054,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 15/149 (10%)

Query: 3   ALRYSTL-----EKRIGYAFANRSLLEKALTHS------SISHSYQESYERLEFLGDRIL 51
           ++R S L     E  + + F NR LL +AL ++      +      +  + L  LGD  +
Sbjct: 5   SIRISALILSACEALLSHTFTNRLLLLEALNNTGLPLVYNAKSHVLQRNDALAVLGDARM 64

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
             ++    ++      +G+ S          T +Q+ R L + +++  +           
Sbjct: 65  DAILCRWWWDAGFQRVKGQWSQARLDKCGNVTLAQLGRRLGVDTYVIKNPGTVVVS---- 120

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVD 140
             + A  VE+L+ A+YLDGG E     + 
Sbjct: 121 DKMVAMAVEALMGAVYLDGGEEALEGVMM 149


>gi|82469824|gb|ABB77170.1| R2D2 [Drosophila melanogaster]
          Length = 311

 Score = 42.2 bits (97), Expect = 0.054,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 T     T+   P  D  +   VE+  +  A G   SKR A+ +AA+ +L++ 
Sbjct: 11  QEFCARTQINIPTYSFIPGEDGGYVCKVELLEIE-ALGNGRSKRDAKHLAASNILRKI 67



 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211
            RD   EL+++   +    P  ++  +SG    P F     ++ +        S  K+ A
Sbjct: 93  NRDMVKELRDYCVRREMPLPCIEIVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDA 149

Query: 212 EQVAAAEVL 220
            Q AA E+L
Sbjct: 150 RQRAAIEML 158


>gi|194770353|ref|XP_001967258.1| GF15959 [Drosophila ananassae]
 gi|190614534|gb|EDV30058.1| GF15959 [Drosophila ananassae]
          Length = 460

 Score = 42.2 bits (97), Expect = 0.055,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 39/156 (25%), Gaps = 6/156 (3%)

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
               RF    + +   ++    D     +       +             + L      +
Sbjct: 295 PRGKRFLQCQTLQQICEIWHLGDYCRRKQKELQTLGNSGRADVEPPEAQAKRLKLEEAAN 354

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
              +     + +                KT+L   A       P Y+         D  F
Sbjct: 355 AIEDEYAGVICRNMPFLRSTYPSDNHLPKTQLYVHAGKAGKNPPGYETQQC-----DKLF 409

Query: 190 TVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
             +    G   +    + +K+ AEQ AA   L   G
Sbjct: 410 RAICSYDGQRFSSTFWEKNKKQAEQGAALVALLHLG 445


>gi|118783761|ref|XP_001230901.1| AGAP004281-PA [Anopheles gambiae str. PEST]
 gi|116129024|gb|EAU76990.1| AGAP004281-PA [Anopheles gambiae str. PEST]
          Length = 344

 Score = 42.2 bits (97), Expect = 0.056,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V + G     G   SK+ A ++AA+E  K  
Sbjct: 301 FVARVTV-GEQSFTGTGQSKKVARKMAASEACKAL 334


>gi|311264943|ref|XP_003130412.1| PREDICTED: ATP-dependent RNA helicase A-like [Sus scrofa]
          Length = 160

 Score = 42.2 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V + G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNY-TGMGNSTNKKDAQSNAARD 64


>gi|296478925|gb|DAA21040.1| ATP-dependent RNA helicase A [Bos taurus]
          Length = 1287

 Score = 42.2 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V + G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNY-TGMGNSTNKKDAQSNAARD 64


>gi|291415218|ref|XP_002723851.1| PREDICTED: ATP-dependent RNA helicase A [Oryctolagus cuniculus]
          Length = 1260

 Score = 42.2 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V + G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNY-TGMGNSTNKKDAQSNAARD 64


>gi|27806665|ref|NP_776461.1| ATP-dependent RNA helicase A [Bos taurus]
 gi|2500541|sp|Q28141|DHX9_BOVIN RecName: Full=ATP-dependent RNA helicase A; AltName: Full=DEAH box
           protein 9; AltName: Full=Nuclear DNA helicase II;
           Short=NDH II
 gi|577739|emb|CAA58036.1| nuclear DNA helicase II [Bos taurus]
          Length = 1287

 Score = 42.2 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V + G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNY-TGMGNSTNKKDAQSNAARD 64


>gi|328865213|gb|EGG13599.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 760

 Score = 42.2 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 19/52 (36%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           T        +  DH  +F   V++ G         +K+ AE+ AA   L   
Sbjct: 21  TLPTYDVTTTCQDHAKKFMCKVKVQGHQYNSLWMDNKKDAEKHAATVALVEL 72


>gi|190339936|gb|AAI63533.1| Similar to NF-kappa-B-repressing factor (NFkB-repressing factor)
           (Transcription factor NRF) (ITBA4 protein) [Danio rerio]
          Length = 861

 Score = 42.2 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
                + +         +A   +    ++      +   TF   P+ +  +   V + G 
Sbjct: 478 QYVPDRSKHWTEFVIMENAHDAICILNNSAAFNRMKVDYTFDPVPNSN-LWLCNVYLQGE 536

Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223
             AQ    +K++A+  AA E +K+ 
Sbjct: 537 LVAQARG-TKKSAKHSAAEEAVKKL 560



 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           D  +   V + G   A G+   K+  + +AA E L   
Sbjct: 645 DHSWRCEVYLDGQYVATGLGP-KKTVKHIAAEEALATL 681


>gi|319738667|ref|NP_001004499.2| NF-kappa B repressing factor [Danio rerio]
          Length = 858

 Score = 42.2 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
                + +         +A   +    ++      +   TF   P+ +  +   V + G 
Sbjct: 478 QYVPDRSKHWTEFVIMENAHDAICILNNSAAFNRMKVDYTFDPVPNSN-LWLCNVYLQGE 536

Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223
             AQ    +K++A+  AA E +K+ 
Sbjct: 537 LVAQARG-TKKSAKHSAAEEAVKKL 560



 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           D  +   V + G   A G+   K+  + +AA E L   
Sbjct: 642 DHSWRCEVYLDGQYVATGLGP-KKTVKHIAAEEALAML 678


>gi|312375539|gb|EFR22895.1| hypothetical protein AND_14041 [Anopheles darlingi]
          Length = 512

 Score = 42.2 bits (97), Expect = 0.058,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 7/151 (4%)

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL------YLDGGIEVA 135
           +T  Q+    +L  + R +  +     +           SL  ++            E  
Sbjct: 306 QTMQQICDIWELGDYCRETQLVYHQAGNQGRRACRPRTLSLDQSVDGSFGGGKRQCFEGQ 365

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
            +  ++   +  +   +       EL +     +      ++        D  F  ++E 
Sbjct: 366 TSNQEQSVIEENICFIRANFPQDNELPKTKLFLYARRNNLELAQYEVQQKDKLFKGIIEF 425

Query: 196 SGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225
            G   +    + SKR AEQ AA   L + G+
Sbjct: 426 DGKRYSSTFWEKSKRFAEQAAALVCLVQLGV 456


>gi|158339747|ref|YP_001520754.1| exoribonuclease II, putative [Acaryochloris marina MBIC11017]
 gi|158309988|gb|ABW31604.1| exoribonuclease II, putative [Acaryochloris marina MBIC11017]
          Length = 767

 Score = 42.2 bits (97), Expect = 0.059,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             T  ++    +    D  F    E+          G+   K+ A+ +AA E+L++ 
Sbjct: 695 CQTLRWETPVYTMDSSDEWFICECELSVLGQQLEGSGVAKKKKLAKSIAAREILEQL 751


>gi|301776997|ref|XP_002923919.1| PREDICTED: ATP-dependent RNA helicase A-like [Ailuropoda
           melanoleuca]
          Length = 1276

 Score = 42.2 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                          G  +  +F   V + G      G   +K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSNAARD 64


>gi|281337823|gb|EFB13407.1| hypothetical protein PANDA_013142 [Ailuropoda melanoleuca]
          Length = 1155

 Score = 42.2 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                          G  +  +F   V + G      G   +K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSNAARD 64


>gi|145492648|ref|XP_001432321.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399432|emb|CAK64924.1| unnamed protein product [Paramecium tetraurelia]
          Length = 467

 Score = 42.2 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           F     I+ L  A+G   SK+ A+  AA++ 
Sbjct: 30  FRCEFYINCLKIAEGQGVSKKYAKNDAASKA 60


>gi|73960433|ref|XP_859097.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA
           helicase II) (NDH II) (DEAH-box protein 9) isoform 3
           [Canis familiaris]
          Length = 862

 Score = 42.2 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                          G  +  +F   V + G      G   +K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSNAARD 64


>gi|73960441|ref|XP_859257.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA
           helicase II) (NDH II) (DEAH-box protein 9) isoform 6
           [Canis familiaris]
          Length = 1284

 Score = 42.2 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                          G  +  +F   V + G      G   +K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSNAARD 64


>gi|73960443|ref|XP_859296.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA
           helicase II) (NDH II) (DEAH-box protein 9) isoform 7
           [Canis familiaris]
          Length = 1284

 Score = 42.2 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                          G  +  +F   V + G      G   +K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSNAARD 64


>gi|73960435|ref|XP_849581.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA
           helicase II) (NDH II) (DEAH-box protein 9) isoform 2
           [Canis familiaris]
 gi|73960445|ref|XP_537154.2| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA
           helicase II) (NDH II) (DEAH-box protein 9) isoform 1
           [Canis familiaris]
          Length = 1276

 Score = 42.2 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                          G  +  +F   V + G      G   +K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSNAARD 64


>gi|324518074|gb|ADY46997.1| Protein SON [Ascaris suum]
 gi|324540941|gb|ADY49607.1| Protein SON [Ascaris suum]
          Length = 140

 Score = 42.2 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQ 213
           +   + L E    K    P++     SGP ++ RFT    ++G+         SK+  + 
Sbjct: 62  KHPVSMLMELCSKKHWPPPQFTCIE-SGPSNNRRFTWKAVVNGVEYEPIASSASKKTGKA 120

Query: 214 VAAAEVLKREGI 225
              A VL+  G+
Sbjct: 121 QVCAVVLQSLGL 132


>gi|149247014|ref|XP_001527932.1| hypothetical protein LELG_00452 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146447886|gb|EDK42274.1| hypothetical protein LELG_00452 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 640

 Score = 42.2 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV------LKREGI 225
            F  V  ++G+    G+D SK+ + Q AA         L + G+
Sbjct: 594 EFHSVCLLNGVKLGYGIDRSKQRSSQKAAMAAMSNRNELAKLGV 637


>gi|242766587|ref|XP_002341200.1| RNAse III, putative [Talaromyces stipitatus ATCC 10500]
 gi|218724396|gb|EED23813.1| RNAse III, putative [Talaromyces stipitatus ATCC 10500]
          Length = 142

 Score = 42.2 bits (97), Expect = 0.061,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 6  YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             +++  GY F ++SLL +A+   +     ++  + L   G  IL + I         +
Sbjct: 12 VQAIQEITGYTFNDQSLLSEAV--EAADFRNKDGNKDLALPGGAILKVFIIMEGRQRHQN 69

Query: 66 AKE 68
           K 
Sbjct: 70 RKT 72


>gi|218461557|ref|ZP_03501648.1| ribonuclease III [Rhizobium etli Kim 5]
          Length = 45

 Score = 42.2 bits (97), Expect = 0.061,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 5  RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
            + LE  IGY F  ++ L++ALTH+S       +
Sbjct: 11 DRAKLESLIGYDFVEKARLDRALTHASARTEKGGN 45


>gi|149636339|ref|XP_001515991.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 9
           [Ornithorhynchus anatinus]
          Length = 1325

 Score = 42.2 bits (97), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V + G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKVTPTYEIRAVGNKNRQKFMCEVRVEGFNY-TGMGNSTNKKDAQSNAARD 64


>gi|115534938|ref|NP_508195.2| hypothetical protein F55A4.4 [Caenorhabditis elegans]
 gi|90568094|gb|AAB07562.2| Hypothetical protein F55A4.4 [Caenorhabditis elegans]
          Length = 284

 Score = 42.2 bits (97), Expect = 0.061,   Method: Composition-based stats.
 Identities = 14/121 (11%), Positives = 32/121 (26%), Gaps = 1/121 (0%)

Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
           +                + + A      +       +K              +   +L E
Sbjct: 91  KAMGKGKNKKSAQQEACTQLLATVEHLTLAANVRKTEKNQATMKKDEEIDVLNPVAQLNE 150

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +A   +   P ++            F +          +G   SK  +++ AA  +L+  
Sbjct: 151 YAQKFYKKYPTFEFVKEQAVGKHREFVIQATFENKTL-EGRGPSKIISKRAAAEAILESI 209

Query: 224 G 224
           G
Sbjct: 210 G 210



 Score = 37.6 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 182 GPDHDPRFTVV---VEISGLAPAQ--GMDCSKRAAEQVAAAEVL 220
           G  H+ ++ V    V    +  A+  G   +K++A+Q A  ++L
Sbjct: 68  GDQHNRQYAVRYTLVADDNVVKAKAMGKGKNKKSAQQEACTQLL 111


>gi|268570080|ref|XP_002640687.1| Hypothetical protein CBG19749 [Caenorhabditis briggsae]
 gi|187023917|emb|CAP36964.1| hypothetical protein CBG_19749 [Caenorhabditis briggsae AF16]
          Length = 436

 Score = 42.2 bits (97), Expect = 0.061,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 23/72 (31%), Gaps = 5/72 (6%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQ 213
              K  L ++          Y+   R     D RF     I       G+   + R AEQ
Sbjct: 358 PTPKMVLHDYLVETKTPKATYETVKRE----DKRFVSTAIIGDKKFRSGIGQPNLRMAEQ 413

Query: 214 VAAAEVLKREGI 225
           VAA   L    I
Sbjct: 414 VAALAALHGMNI 425


>gi|302794035|ref|XP_002978782.1| hypothetical protein SELMODRAFT_418472 [Selaginella moellendorffii]
 gi|300153591|gb|EFJ20229.1| hypothetical protein SELMODRAFT_418472 [Selaginella moellendorffii]
          Length = 798

 Score = 41.8 bits (96), Expect = 0.062,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 188 RFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            F   VE+ +G          K+ AEQ AA + L   G
Sbjct: 41  TFYCKVELPNGTVVVSEPCRRKKDAEQDAARKALHEIG 78


>gi|37231562|gb|AAH58431.1| Dus2l protein [Mus musculus]
          Length = 289

 Score = 41.8 bits (96), Expect = 0.062,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKR 209
              +   K  L EW   +    P Y+   R+    D  F  VV ++     +   D SK+
Sbjct: 160 YPPQITPKMCLLEWCRREKLPQPVYETVQRTI---DRMFCSVVTVAEQKYQSTLWDKSKK 216

Query: 210 AAEQVAAAEVLKREGI 225
            AEQ AA   L+ +G+
Sbjct: 217 LAEQTAAIVCLRSQGL 232


>gi|159163360|pdb|1WHN|A Chain A, Solution Structure Of The Dsrbd From Hypothetical Protein
           Bab26260
          Length = 128

 Score = 41.8 bits (96), Expect = 0.062,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKR 209
              +   K  L EW   +    P Y+   R+    D  F  VV ++     +   D SK+
Sbjct: 22  YPPQITPKMCLLEWCRREKLPQPVYETVQRTI---DRMFCSVVTVAEQKYQSTLWDKSKK 78

Query: 210 AAEQVAAAEVLKREGI 225
            AEQ AA   L+ +G+
Sbjct: 79  LAEQTAAIVCLRSQGL 94


>gi|148679393|gb|EDL11340.1| mCG20459, isoform CRA_a [Mus musculus]
          Length = 380

 Score = 41.8 bits (96), Expect = 0.062,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKR 209
              +   K  L EW   +    P Y+   R+    D  F  VV ++     +   D SK+
Sbjct: 251 YPPQITPKMCLLEWCRREKLPQPVYETVQRTI---DRMFCSVVTVAEQKYQSTLWDKSKK 307

Query: 210 AAEQVAAAEVLKREGI 225
            AEQ AA   L+ +G+
Sbjct: 308 LAEQTAAIVCLRSQGL 323


>gi|82469814|gb|ABB77165.1| R2D2 [Drosophila rufa]
          Length = 305

 Score = 41.8 bits (96), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-- 207
                RD   EL+++        P  ++  +SG  + P F     ++ +        S  
Sbjct: 82  MTNLNRDMLKELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDK 138

Query: 208 KRAAEQVAAAEVL 220
           K+ A Q AA  +L
Sbjct: 139 KKDARQRAAIAML 151



 Score = 37.2 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           D  +   V +  +  A G   SKR A+ +AA  +L++ 
Sbjct: 18  DGGYVCKVTMLEIE-AYGNGRSKRDAKHLAAGNILRKI 54


>gi|110625595|ref|NP_079794.1| tRNA-dihydrouridine synthase 2-like [Mus musculus]
 gi|73620836|sp|Q9D7B1|DUS2L_MOUSE RecName: Full=tRNA-dihydrouridine synthase 2-like
 gi|12844161|dbj|BAB26260.1| unnamed protein product [Mus musculus]
 gi|109733553|gb|AAI16937.1| Dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Mus musculus]
 gi|109733887|gb|AAI16935.1| Dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Mus musculus]
 gi|148679394|gb|EDL11341.1| mCG20459, isoform CRA_b [Mus musculus]
          Length = 493

 Score = 41.8 bits (96), Expect = 0.062,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKR 209
              +   K  L EW   +    P Y+   R+    D  F  VV ++     +   D SK+
Sbjct: 364 YPPQITPKMCLLEWCRREKLPQPVYETVQRTI---DRMFCSVVTVAEQKYQSTLWDKSKK 420

Query: 210 AAEQVAAAEVLKREGI 225
            AEQ AA   L+ +G+
Sbjct: 421 LAEQTAAIVCLRSQGL 436


>gi|195478541|ref|XP_002100554.1| GE17129 [Drosophila yakuba]
 gi|194188078|gb|EDX01662.1| GE17129 [Drosophila yakuba]
          Length = 473

 Score = 41.8 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 186 DPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224
           D  F  +    G   +    + +K+ AEQ AA   L   G
Sbjct: 419 DKLFRSICSYDGQRFSSSFWEKNKKQAEQGAALVALLHLG 458


>gi|330930999|ref|XP_003303230.1| hypothetical protein PTT_15361 [Pyrenophora teres f. teres 0-1]
 gi|311320897|gb|EFQ88677.1| hypothetical protein PTT_15361 [Pyrenophora teres f. teres 0-1]
          Length = 914

 Score = 41.8 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 8   TLEKRIGYAFANRSLLEKAL-----THSSISHS---YQESYERLEFLGDRILGLLISTLL 59
            +E+ IGY F ++    +AL     T            ++  RL  LGDR L L +S + 
Sbjct: 90  RVEESIGYTFKHKLYCIEALKQTNSTTPLYFQGVAINTDNNRRLALLGDRALDLALSEIW 149

Query: 60  FN 61
           F 
Sbjct: 150 FY 151


>gi|308812800|ref|XP_003083707.1| unnamed protein product [Ostreococcus tauri]
 gi|116055588|emb|CAL58256.1| unnamed protein product [Ostreococcus tauri]
          Length = 164

 Score = 41.8 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 15/47 (31%)

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +        F+V +E+       G   S + A++ AA       
Sbjct: 89  WVIQEQDPAKQTFSVRLELGSTTKGSGEAKSIKVAKRQAAKSAFDEL 135


>gi|294657725|ref|XP_460024.2| DEHA2E16610p [Debaryomyces hansenii CBS767]
 gi|199432903|emb|CAG88280.2| DEHA2E16610p [Debaryomyces hansenii]
          Length = 216

 Score = 41.8 bits (96), Expect = 0.064,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 47/130 (36%), Gaps = 11/130 (8%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
            Y+ ++  L  + LTH S  +  +   E+L  +G +IL L  + L+ +   + +      
Sbjct: 57  KYSISD-DLALQVLTHKSFGNGIKPYNEKLSAMGAKILNLFCAKLVTDKPTTNENAIDGK 115

Query: 74  ----------RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                     +  +   +         L+   F +  +       S    + A ++ +L+
Sbjct: 116 NLDSLGSPIAKELAGRMSLGLFAKTTNLNSIMFWKSYNHDLSFESSGEMKVSAQMMYALV 175

Query: 124 AALYLDGGIE 133
            A+    G E
Sbjct: 176 GAITFTHGKE 185


>gi|328766772|gb|EGF76825.1| hypothetical protein BATDEDRAFT_28342 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 460

 Score = 41.8 bits (96), Expect = 0.065,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 45/148 (30%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           S +      ++RLEFLGD +L  L    L+        G LS     LV  +  + V+ +
Sbjct: 132 SGTGKLGSIFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 191

Query: 91  LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
           + L  +IR +    +      T+     + S  +                 +W +     
Sbjct: 192 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTSLPISTSATQIASARLFWNKGNTAP 251

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
                  ++ L              +  
Sbjct: 252 KTAGDVYESMLGAVFVDSQFDIHCVQSM 279


>gi|126336839|ref|XP_001376587.1| PREDICTED: similar to NF-kappaB repressing factor, [Monodelphis
           domestica]
          Length = 799

 Score = 41.8 bits (96), Expect = 0.066,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  +   V + G   A+G   SK+ ++  AA E L
Sbjct: 484 NRLWRCQVFLEGQCLAEGYG-SKKTSKHAAADEAL 517


>gi|330933507|ref|XP_003304192.1| hypothetical protein PTT_16685 [Pyrenophora teres f. teres 0-1]
 gi|311319337|gb|EFQ87704.1| hypothetical protein PTT_16685 [Pyrenophora teres f. teres 0-1]
          Length = 591

 Score = 41.8 bits (96), Expect = 0.067,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 8   TLEKRIGYAFANRSLLEKAL-----THSSISHS---YQESYERLEFLGDRILGLLISTLL 59
            +E+ IGY F ++    +AL     T            ++  RL  LGDR L L +S + 
Sbjct: 90  RVEESIGYTFKHKLYCIEALKQTNSTTPLYFQGVAINTDNNRRLALLGDRALDLALSEIW 149

Query: 60  FN 61
           F 
Sbjct: 150 FY 151


>gi|238878349|gb|EEQ41987.1| hypothetical protein CAWG_00181 [Candida albicans WO-1]
          Length = 220

 Score = 41.8 bits (96), Expect = 0.068,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 2   SALRYSTLEKRIG--YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           +    S ++  +G  Y   +  +  + +TH S  +  +   E+L  +G ++L L  +  +
Sbjct: 54  NETNISHIKSFLGDKYNIPD-EIALQVITHKSFGNGIKPYNEKLAAMGSKLLSLYFAKYV 112

Query: 60  FNHFDSAKE 68
            N       
Sbjct: 113 TNQPCKHDN 121


>gi|82469800|gb|ABB77158.1| R2D2 [Drosophila biarmipes]
          Length = 302

 Score = 41.8 bits (96), Expect = 0.068,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211
            RD   EL+++        P  ++  + G  + P F     ++ +        S  K+ A
Sbjct: 84  NRDMLKELRDYCVRHEMPLPTIEIVQQCGTPNAPEFVACCSVASIVR---YGKSDKKKDA 140

Query: 212 EQVAAAEVL 220
            Q AA E+L
Sbjct: 141 RQRAAIEML 149



 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           D  +   VE+  +  A G   SKR A+ +AAA +L++ 
Sbjct: 19  DGGYVCKVELMEIE-AYGNGRSKRDAKHLAAANILRKI 55


>gi|332022994|gb|EGI63259.1| tRNA-dihydrouridine synthase 2-like protein [Acromyrmex echinatior]
          Length = 461

 Score = 41.8 bits (96), Expect = 0.069,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 45/149 (30%), Gaps = 7/149 (4%)

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVESLIAALYLDGGIEVAGTF 138
           +A+T  Q+ +   L  + R  S+  +         +   +++    ++     I      
Sbjct: 306 NAQTLEQICQVWRLDDYCRSKSEEFQAKGLLGRFQVMPGILDKDNNSISHKRKIHEEEDV 365

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
                              KT L +W        P Y     S       F  VV + G 
Sbjct: 366 SLMRCAFLRNSYITDSELPKTRLLKWTKENRKKMPVYNTRQES-----KLFCSVVTVDGR 420

Query: 199 APAQG-MDCSKRAAEQVAAAEVLKREGIW 226
                  + +K+ AEQ AA   L   GI 
Sbjct: 421 KYGSSFWEKNKKWAEQGAALVCLYFLGII 449


>gi|241949343|ref|XP_002417394.1| 60S ribosomal protein L3, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
 gi|223640732|emb|CAX45045.1| 60S ribosomal protein L3, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
          Length = 407

 Score = 41.8 bits (96), Expect = 0.070,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           P+F   V +      +G+  S + A+  A+
Sbjct: 336 PQFLAGVFVGNDKIGEGIGSSLKEAQIRAS 365


>gi|301615908|ref|XP_002937403.1| PREDICTED: ATP-dependent RNA helicase A-like protein [Xenopus
           (Silurana) tropicalis]
          Length = 1257

 Score = 41.8 bits (96), Expect = 0.070,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                         +G     +F   V + G     GM  S  K+ A+  AA +
Sbjct: 12  CGKKKLTPNYEIRAAGNKMRQKFMCEVRVDGFNY-TGMGNSTNKKDAQTNAARD 64


>gi|307383|gb|AAB48855.1| RNA helicase A [Homo sapiens]
          Length = 1279

 Score = 41.8 bits (96), Expect = 0.070,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V++ G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPTYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64


>gi|82469826|gb|ABB77171.1| R2D2 [Drosophila melanogaster]
          Length = 311

 Score = 41.8 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 T     T+   P  D  +   VE+  +  A G   SKR A+ +AA+ +L++ 
Sbjct: 11  QEFCARTQINLPTYSFIPGEDGGYVCKVELLEIE-ALGNGRSKRDAKHLAASNILRKI 67



 Score = 39.9 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211
            RD   EL+++   +    P  ++  +SG    P F     ++ +        S  K+ A
Sbjct: 93  NRDMVKELRDYCVRREMPLPSIEIVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDA 149

Query: 212 EQVAAAEVL 220
            Q AA E+L
Sbjct: 150 RQRAAIEML 158


>gi|82469828|gb|ABB77172.1| R2D2 [Drosophila melanogaster]
 gi|82469832|gb|ABB77174.1| R2D2 [Drosophila melanogaster]
          Length = 311

 Score = 41.8 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 T     T+   P  D  +   VE+  +  A G   SKR A+ +AA+ +L++ 
Sbjct: 11  QEFCARTQINLPTYSFIPGEDGGYVCKVELLEIE-ALGNGRSKRDAKHLAASNILRKI 67



 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211
            RD   EL+++   +    P  +V  +SG    P F     ++ +        S  K+ A
Sbjct: 93  NRDMVKELRDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDA 149

Query: 212 EQVAAAEVL 220
            Q AA E+L
Sbjct: 150 RQRAAIEML 158


>gi|82469838|gb|ABB77177.1| R2D2 [Drosophila melanogaster]
          Length = 311

 Score = 41.8 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 T     T+   P  D  +   VE+  +  A G   SKR A+ +AA+ +L++ 
Sbjct: 11  QEFCARTQINLPTYSFIPGEDGGYVCKVELLEIE-ALGNGRSKRDAKHLAASNILRKI 67



 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211
            RD   EL+++   +    P  +V  +SG    P F     ++ +        S  K+ A
Sbjct: 93  NRDMVKELRDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDA 149

Query: 212 EQVAAAEVL 220
            Q AA E+L
Sbjct: 150 RQRAAIEML 158


>gi|24582609|ref|NP_609152.1| r2d2, isoform A [Drosophila melanogaster]
 gi|281364575|ref|NP_001162903.1| r2d2, isoform B [Drosophila melanogaster]
 gi|7297298|gb|AAF52561.1| r2d2, isoform A [Drosophila melanogaster]
 gi|48958433|gb|AAT47770.1| LD06392p [Drosophila melanogaster]
 gi|82469830|gb|ABB77173.1| R2D2 [Drosophila melanogaster]
 gi|272406933|gb|ACZ94194.1| r2d2, isoform B [Drosophila melanogaster]
          Length = 311

 Score = 41.8 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 T     T+   P  D  +   VE+  +  A G   SKR A+ +AA+ +L++ 
Sbjct: 11  QEFCARTQINLPTYSFIPGEDGGYVCKVELLEIE-ALGNGRSKRDAKHLAASNILRKI 67



 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211
            RD   EL+++   +    P  +V  +SG    P F     ++ +        S  K+ A
Sbjct: 93  NRDMVKELRDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDA 149

Query: 212 EQVAAAEVL 220
            Q AA E+L
Sbjct: 150 RQRAAIEML 158


>gi|224005857|ref|XP_002291889.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972408|gb|EED90740.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1310

 Score = 41.8 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG--PDHDPRFTVVVEISGLAPAQGMDC 206
            S       + +L E        + +  V   S         F + V ++ +   +G   
Sbjct: 527 CSKYRWEMPRYDLIEPPSLPPSKSNDNNVGEGSNVSRHSARDFVLSVHVNEVELGRGRGG 586

Query: 207 SKRAAEQVAAAEVLKRE 223
           +K +A+Q A+ + L   
Sbjct: 587 TKASAKQDASRKALAAL 603


>gi|332230603|ref|XP_003264483.1| PREDICTED: ATP-dependent RNA helicase A isoform 1 [Nomascus
           leucogenys]
          Length = 1270

 Score = 41.8 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V++ G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64


>gi|296229581|ref|XP_002760333.1| PREDICTED: ATP-dependent RNA helicase A isoform 1 [Callithrix
           jacchus]
 gi|296229583|ref|XP_002760334.1| PREDICTED: ATP-dependent RNA helicase A isoform 2 [Callithrix
           jacchus]
          Length = 1270

 Score = 41.8 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V++ G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64


>gi|194765667|ref|XP_001964948.1| GF21798 [Drosophila ananassae]
 gi|190617558|gb|EDV33082.1| GF21798 [Drosophila ananassae]
          Length = 316

 Score = 41.8 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KR 209
              RD   EL+++        P  ++  + G  + P F    +++ L        S  K+
Sbjct: 97  NTNRDMLKELRDFCVRHEMPLPTIEIVQQCGTPNAPEFVACCKVASLTR---YGKSDKKK 153

Query: 210 AAEQVAAAEVL 220
            A Q AA E+L
Sbjct: 154 DARQRAAIEML 164


>gi|119611543|gb|EAW91137.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_a [Homo
           sapiens]
          Length = 1014

 Score = 41.8 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V++ G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64


>gi|116283708|gb|AAH25245.1| DHX9 protein [Homo sapiens]
          Length = 593

 Score = 41.8 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V++ G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64


>gi|109019118|ref|XP_001114405.1| PREDICTED: ATP-dependent RNA helicase A isoform 2 [Macaca mulatta]
 gi|297281300|ref|XP_002802074.1| PREDICTED: ATP-dependent RNA helicase A [Macaca mulatta]
          Length = 1275

 Score = 41.8 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V++ G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64


>gi|33878473|gb|AAH14246.1| DHX9 protein [Homo sapiens]
          Length = 599

 Score = 41.8 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V++ G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64


>gi|62020087|gb|AAH08773.1| DHX9 protein [Homo sapiens]
          Length = 596

 Score = 41.8 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V++ G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64


>gi|82469808|gb|ABB77162.1| R2D2 [Drosophila pallidosa]
          Length = 293

 Score = 41.8 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KR 209
              RD   EL+++        P  ++  + G  + P F    +++ L        S  K+
Sbjct: 74  NTNRDMLKELRDFCVRHEMPLPTIEIVQQCGTPNAPEFVACCKVASLTR---YGKSDKKK 130

Query: 210 AAEQVAAAEVL 220
            A Q AA E+L
Sbjct: 131 DARQRAAIEML 141


>gi|297662534|ref|XP_002809755.1| PREDICTED: ATP-dependent RNA helicase A-like [Pongo abelii]
 gi|71153339|sp|Q5R874|DHX9_PONAB RecName: Full=ATP-dependent RNA helicase A; AltName: Full=DEAH box
           protein 9; AltName: Full=Nuclear DNA helicase II;
           Short=NDH II
 gi|55730630|emb|CAH92036.1| hypothetical protein [Pongo abelii]
          Length = 1269

 Score = 41.8 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V++ G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64


>gi|100913206|ref|NP_001348.2| ATP-dependent RNA helicase A [Homo sapiens]
 gi|332811349|ref|XP_003308679.1| PREDICTED: ATP-dependent RNA helicase A isoform 1 [Pan troglodytes]
 gi|116241330|sp|Q08211|DHX9_HUMAN RecName: Full=ATP-dependent RNA helicase A; AltName: Full=DEAH box
           protein 9; AltName: Full=Nuclear DNA helicase II;
           Short=NDH II
 gi|55662450|emb|CAH71701.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapiens]
 gi|56206329|emb|CAI19277.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapiens]
 gi|119611544|gb|EAW91138.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_b [Homo
           sapiens]
 gi|187952519|gb|AAI37137.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapiens]
 gi|255652739|dbj|BAH90798.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [synthetic construct]
          Length = 1270

 Score = 41.8 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V++ G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64


>gi|1082769|pir||A47363 RNA helicase A - human
          Length = 1279

 Score = 41.8 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V++ G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64


>gi|1806048|emb|CAA71668.1| nuclear DNA helicase II [Homo sapiens]
          Length = 1270

 Score = 41.8 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAAE 218
                          G  +  +F   V++ G     GM  S  K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQSNAARD 64


>gi|189198173|ref|XP_001935424.1| 60S ribosomal protein L3 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187981372|gb|EDU47998.1| 60S ribosomal protein L3 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 444

 Score = 41.8 bits (96), Expect = 0.074,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 1/69 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            R    +L      +    P  ++   +G     P F V V        +    S   A 
Sbjct: 339 FRTPTRDLSWLCRREGFEPPVARLISETGRLSRHPVFVVGVYSGRDKLGEASGSSLNEAR 398

Query: 213 QVAAAEVLK 221
             A+A  LK
Sbjct: 399 IRASAAALK 407



 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 3   ALRYSTLEKRIGY--AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +++   L  R+     F    +L + L H S   +   +   L  LG ++LG   S  L 
Sbjct: 132 SIKLHALRSRLSLPERFP-LQVLARTLVHPSADANPAFNNASLSILGRQLLGYYTSEWLI 190

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
             +       +     + +  +  + VARE  +
Sbjct: 191 CTYPRLPMEVVFAAVEAYIGPKALATVAREWGI 223


>gi|313232439|emb|CBY24107.1| unnamed protein product [Oikopleura dioica]
          Length = 564

 Score = 41.8 bits (96), Expect = 0.075,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 4/96 (4%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDP 187
           +              +   L            L++  H   G +   +    S    ++ 
Sbjct: 377 EQDYGYFNHLSITDNRLHQLCGQAGIPAPYQFLKDIIHKIHGPSGAEEKLNISSNTPNNT 436

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            F   +   G    +G   SK+ A+ +AA  +L + 
Sbjct: 437 TFHYTL---GNDVVEGRARSKKNAKHIAAQAMLAKL 469



 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +++I G     G   ++  A+ +AA E LK  
Sbjct: 327 KYIIKIDGKEYGSGEGANRTIAKNIAALETLKLL 360


>gi|308470958|ref|XP_003097711.1| hypothetical protein CRE_14205 [Caenorhabditis remanei]
 gi|308239829|gb|EFO83781.1| hypothetical protein CRE_14205 [Caenorhabditis remanei]
          Length = 436

 Score = 41.8 bits (96), Expect = 0.075,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQ 213
              K  L ++          Y+VT R     D RF     I       G+   + R AEQ
Sbjct: 358 PTPKMALHDYCVETKTPKATYEVTKRD----DKRFIATATIGEKKFRSGIGQPNVRMAEQ 413

Query: 214 VAAAEVLKREGI 225
           VAA   L    I
Sbjct: 414 VAALAALHGMNI 425


>gi|73960437|ref|XP_859173.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA
           helicase II) (NDH II) (DEAH-box protein 9) isoform 4
           [Canis familiaris]
          Length = 223

 Score = 41.8 bits (96), Expect = 0.076,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                          G  +  +F   V + G      G   +K+ A+  AA +
Sbjct: 12  CGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSNAARD 64


>gi|68489074|ref|XP_711650.1| likely mitochondrial ribosomal protein L15 [Candida albicans
           SC5314]
 gi|68489213|ref|XP_711581.1| likely mitochondrial ribosomal protein L15 [Candida albicans
           SC5314]
 gi|46432894|gb|EAK92357.1| likely mitochondrial ribosomal protein L15 [Candida albicans
           SC5314]
 gi|46432968|gb|EAK92428.1| likely mitochondrial ribosomal protein L15 [Candida albicans
           SC5314]
          Length = 220

 Score = 41.8 bits (96), Expect = 0.076,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 2   SALRYSTLEKRIG--YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           +    S ++  +G  Y   +  +  + +TH S  +  +   E+L  +G ++L L  +  +
Sbjct: 54  NETNISHIKSFLGDKYNIPD-EIALQVITHKSFGNGIKPYNEKLAAMGSKLLSLYFAKYV 112

Query: 60  FNHFDSAKE 68
            N       
Sbjct: 113 TNQPCKHDN 121


>gi|330917728|ref|XP_003297934.1| hypothetical protein PTT_08495 [Pyrenophora teres f. teres 0-1]
 gi|311329130|gb|EFQ93969.1| hypothetical protein PTT_08495 [Pyrenophora teres f. teres 0-1]
          Length = 409

 Score = 41.8 bits (96), Expect = 0.077,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 1/87 (1%)

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVE 194
                   +   + +    R    +L      +    P  ++   +G     P F V V 
Sbjct: 286 FYRDHFLSRHLDISTIFDFRTPTRDLSWLCRREGFEPPVARLISETGRLSRHPVFVVGVY 345

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                  +    S   A   A+A  LK
Sbjct: 346 SGRDKLGEASGSSLDEARIRASAAALK 372



 Score = 38.4 bits (87), Expect = 0.69,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 3   ALRYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +++   L  R+         +L + L H S   +   +   L  LG ++LG   S  L  
Sbjct: 97  SIKLHALRSRLSLPPRFPLQVLARTLVHPSADANPAFNNASLSILGRQLLGYYTSEWLIC 156

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
            +       +     + +  +  + VARE  +
Sbjct: 157 TYPRLPMEVVFAAVEAYIGPKALATVAREWGI 188


>gi|328850732|gb|EGF99893.1| hypothetical protein MELLADRAFT_112348 [Melampsora larici-populina
           98AG31]
          Length = 530

 Score = 41.8 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE  + Y F N  LL  AL         ++ + RLE++GD +L    S ++      ++ 
Sbjct: 385 LENILRYTFDNIHLLRYAL-----GQFGKDEFRRLEWIGDALLADWSSLVMKKIQLKSQR 439

Query: 69  GELSVRFNSLVS-AETCSQVAREL 91
                  ++ ++  +T  +     
Sbjct: 440 KLKVHTASTYLNANQTLWKWWVRW 463


>gi|224057014|ref|XP_002191685.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Taeniopygia
           guttata]
          Length = 1284

 Score = 41.8 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 1/52 (1%)

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
                   +G      F   V + G      G   +K+ A+  AA + +   
Sbjct: 18  MPAYEIRAAGGRGRQTFLCEVRVEGFNYVGMGNSTNKKDAQSNAARDFINYL 69


>gi|68490780|ref|XP_710785.1| likely mitochondrial ribosomal protein L15 [Candida albicans
           SC5314]
 gi|68490807|ref|XP_710772.1| likely mitochondrial ribosomal protein L15 [Candida albicans
           SC5314]
 gi|46432015|gb|EAK91524.1| likely mitochondrial ribosomal protein L15 [Candida albicans
           SC5314]
 gi|46432029|gb|EAK91537.1| likely mitochondrial ribosomal protein L15 [Candida albicans
           SC5314]
          Length = 220

 Score = 41.8 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 2   SALRYSTLEKRIG--YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           +    S ++  +G  Y   +  +  + +TH S  +  +   E+L  +G ++L L  +  +
Sbjct: 54  NETNISHIKSFLGDKYNIPD-EIALQVITHKSFGNGIKPYNEKLAAMGSKLLSLYFAKYV 112

Query: 60  FNHFDSAKE 68
            N       
Sbjct: 113 TNQPCKHDN 121


>gi|327268577|ref|XP_003219073.1| PREDICTED: hypothetical protein LOC100565234 [Anolis carolinensis]
          Length = 1126

 Score = 41.5 bits (95), Expect = 0.083,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213
            +   + L E  + +    P + +   + P++   F   V ++G+      +  +K+ A+ 
Sbjct: 1037 KHPVSALLEVCNKRRWSPPVFVLVNDNRPEYRKNFLFKVMVNGVEHKPTFVSPNKKHAKA 1096

Query: 214  VAAAEVLKREGI 225
            VAA   L+  G+
Sbjct: 1097 VAATVALQALGL 1108


>gi|119501793|ref|XP_001267653.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
 gi|119415819|gb|EAW25756.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
          Length = 127

 Score = 41.5 bits (95), Expect = 0.084,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 5  RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG 52
          +   +E+ IG+ F NR  L +AL   +     ++  ++L  +GD++LG
Sbjct: 11 QLQAVEELIGFRFTNRHWLLEAL--QAAGLINRDRNKKLAIIGDKVLG 56


>gi|322511163|gb|ADX06476.1| hypothetical protein 162276054 [Organic Lake phycodnavirus 2]
          Length = 165

 Score = 41.5 bits (95), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 40/150 (26%), Gaps = 6/150 (4%)

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
                 +    L  +    +  D  +                L      +  ++      
Sbjct: 12  KNRCNYKKLGCLFESFLGALFLDTNETKDETFLMGNGTHYCQLFIENVYNALVDWNEILE 71

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
           +    +   +    +    T   +  H    +     V    G D+   F ++  +  + 
Sbjct: 72  NDDNYKNIFQVKIQKEFKCTPEYKIIHQDEELRYTMGVYLCLGNDNCVSFDLLKSLDNIK 131

Query: 200 ------PAQGMDCSKRAAEQVAAAEVLKRE 223
                    G+   K+ AEQ+A  + LK+ 
Sbjct: 132 SSNNIHFGTGVHKIKKKAEQLACLDALKKI 161


>gi|313224938|emb|CBY20730.1| unnamed protein product [Oikopleura dioica]
          Length = 686

 Score = 41.5 bits (95), Expect = 0.086,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             ++++V + G   A      K+ A++ A    LKR 
Sbjct: 239 KNYSILVVVDGFEYAPAEAWKKKLAKEAACRNALKRI 275


>gi|313221521|emb|CBY32268.1| unnamed protein product [Oikopleura dioica]
          Length = 733

 Score = 41.5 bits (95), Expect = 0.087,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 4/96 (4%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDP 187
           +              +   L            L++  H   G +   +    S    ++ 
Sbjct: 546 EQDYGYFNHLSITDNRLHQLCGQAGLPAPYQFLKDIIHKIHGPSGAEEKLNISSNTPNNT 605

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            F   +   G    +G   SK+ A+ +AA  +L + 
Sbjct: 606 TFHYTL---GNDVVEGRARSKKNAKHIAAQAMLAKL 638



 Score = 38.0 bits (86), Expect = 0.96,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +++I G     G   ++  A+ +AA E LK  
Sbjct: 496 KYIIKIDGKEYGSGEGANRTIAKNIAALETLKLL 529


>gi|291301908|ref|YP_003513186.1| ribonuclease II [Stackebrandtia nassauensis DSM 44728]
 gi|290571128|gb|ADD44093.1| ribonuclease II [Stackebrandtia nassauensis DSM 44728]
          Length = 617

 Score = 41.5 bits (95), Expect = 0.087,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL----APAQGMDCSKRAAEQ 213
                        +T         GP H P FT  V  +G       A G    K+AA+ 
Sbjct: 536 PVMALNEYAQTGVITELAWDYDSDGPPHQPTFTCTVTATGDTGEPLSATGTGAGKQAAKT 595

Query: 214 VAAAEVLKRE 223
            AAA  L++ 
Sbjct: 596 SAAAR-LRKI 604


>gi|188593362|emb|CAO78750.1| Oikopleura double-stranded RNA-binding protein dgcr8 [Oikopleura
           dioica]
          Length = 768

 Score = 41.5 bits (95), Expect = 0.087,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 4/96 (4%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDP 187
           +              +   L            L++  H   G +   +    S    ++ 
Sbjct: 581 EQDYGYFNHLSITDNRLHQLCGQAGLPAPYQFLKDIIHKIHGPSGAEEKLNISSNTPNNT 640

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            F   +   G    +G   SK+ A+ +AA  +L + 
Sbjct: 641 TFHYTL---GNDVVEGRARSKKNAKHIAAQAMLAKL 673



 Score = 38.0 bits (86), Expect = 0.96,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +++I G     G   ++  A+ +AA E LK  
Sbjct: 531 KYIIKIDGKEYGSGEGANRTIAKNIAALETLKLL 564


>gi|290985188|ref|XP_002675308.1| predicted protein [Naegleria gruberi]
 gi|284088903|gb|EFC42564.1| predicted protein [Naegleria gruberi]
          Length = 599

 Score = 41.5 bits (95), Expect = 0.088,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 11/70 (15%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA--QGMDCSKRAAEQVAAAE--- 218
           W+           +    GP H   F   +++S L      G   +K+ A++ A  +   
Sbjct: 517 WSQTFGQNMKPTYIETCYGPSHITSFRCEIDLSALKLTNQIGDGKTKKEAKKNACTKSCI 576

Query: 219 ------VLKR 222
                  LK+
Sbjct: 577 SLDQIGALKK 586


>gi|260447031|emb|CBG76444.1| OO_Ba0013J05-OO_Ba0033A15.31 [Oryza officinalis]
          Length = 1333

 Score = 41.5 bits (95), Expect = 0.089,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 20/36 (55%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++ V I G    +G+  +++AA++ A    L+  
Sbjct: 728 QFSIEVRILGEKVGEGIGKTRKAAKRQAVNMSLRNL 763


>gi|222629251|gb|EEE61383.1| hypothetical protein OsJ_15551 [Oryza sativa Japonica Group]
          Length = 927

 Score = 41.5 bits (95), Expect = 0.089,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 20/36 (55%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++ V I G    +G+  +++AA++ A    L+  
Sbjct: 664 QFSIEVRILGEKVGEGIGKTRKAAKRQAVNMSLRNL 699


>gi|218195257|gb|EEC77684.1| hypothetical protein OsI_16738 [Oryza sativa Indica Group]
          Length = 905

 Score = 41.5 bits (95), Expect = 0.089,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 20/36 (55%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++ V I G    +G+  +++AA++ A    L+  
Sbjct: 664 QFSIEVRILGEKVGEGIGKTRKAAKRQAVNMSLRNL 699


>gi|215697502|dbj|BAG91496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215706329|dbj|BAG93185.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 758

 Score = 41.5 bits (95), Expect = 0.089,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 20/36 (55%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++ V I G    +G+  +++AA++ A    L+  
Sbjct: 545 QFSIEVRILGEKVGEGIGKTRKAAKRQAVNMSLRNL 580


>gi|116312020|emb|CAJ86376.1| OSIGBa0155K17.3 [Oryza sativa Indica Group]
          Length = 973

 Score = 41.5 bits (95), Expect = 0.089,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 20/36 (55%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++ V I G    +G+  +++AA++ A    L+  
Sbjct: 732 QFSIEVRILGEKVGEGIGKTRKAAKRQAVNMSLRNL 767


>gi|115459562|ref|NP_001053381.1| Os04g0529500 [Oryza sativa Japonica Group]
 gi|113564952|dbj|BAF15295.1| Os04g0529500 [Oryza sativa Japonica Group]
          Length = 779

 Score = 41.5 bits (95), Expect = 0.089,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 20/36 (55%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++ V I G    +G+  +++AA++ A    L+  
Sbjct: 566 QFSIEVRILGEKVGEGIGKTRKAAKRQAVNMSLRNL 601


>gi|38346621|emb|CAD41201.2| OSJNBa0074L08.12 [Oryza sativa Japonica Group]
          Length = 945

 Score = 41.5 bits (95), Expect = 0.089,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 20/36 (55%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++ V I G    +G+  +++AA++ A    L+  
Sbjct: 732 QFSIEVRILGEKVGEGIGKTRKAAKRQAVNMSLRNL 767


>gi|328785633|ref|XP_003250627.1| PREDICTED: dosage compensation regulator isoform 1 [Apis mellifera]
          Length = 1232

 Score = 41.5 bits (95), Expect = 0.090,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                        ++GP H  RF   + + G      G   +K+ A+  AA +
Sbjct: 12  CTKNSKEPQFDVRQTGPKHRHRFLCELRVPGFDYVGAGNSTNKKDAQGNAARD 64


>gi|259155154|ref|NP_001158819.1| NF-kappa B repressing factor [Salmo salar]
 gi|223647554|gb|ACN10535.1| NF-kappa-B-repressing factor [Salmo salar]
          Length = 784

 Score = 41.5 bits (95), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH  R+   V + G   A G+   K+  + +AA E L   
Sbjct: 566 PDH--RWRCEVYLEGQYVASGIGP-KKTVKHIAAEEALATL 603



 Score = 38.8 bits (88), Expect = 0.60,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   V +     AQ    SK+ ++  AA E +++ 
Sbjct: 459 WQCSVYLQDELVAQAKG-SKKTSKHTAAEEAVRKL 492


>gi|66510919|ref|XP_396525.2| PREDICTED: dosage compensation regulator isoform 2 [Apis mellifera]
          Length = 1239

 Score = 41.5 bits (95), Expect = 0.090,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                        ++GP H  RF   + + G      G   +K+ A+  AA +
Sbjct: 12  CTKNSKEPQFDVRQTGPKHRHRFLCELRVPGFDYVGAGNSTNKKDAQGNAARD 64


>gi|158341217|ref|YP_001522419.1| hypothetical protein AM1_F0115 [Acaryochloris marina MBIC11017]
 gi|158311458|gb|ABW33069.1| hypothetical protein AM1_F0115 [Acaryochloris marina MBIC11017]
          Length = 157

 Score = 41.5 bits (95), Expect = 0.091,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 48/133 (36%), Gaps = 6/133 (4%)

Query: 90  ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149
           +L    ++  + D    +   +   +   +      +++    +      +    Q   +
Sbjct: 18  QLGFLDYLYPNVDPEDALIRLLERARNRAILKAEQQVHILHPRQEEAEQPETSPDQPISQ 77

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             +  ++   +LQE    +    P Y+ +  S       F  +V+  GL    G   SK+
Sbjct: 78  VDEQVKNPIGQLQELCQKQQISLPRYEFSEISEG-----FRCLVQSMGLQ-GVGEGASKK 131

Query: 210 AAEQVAAAEVLKR 222
            A+  AA  +LKR
Sbjct: 132 KAKMGAAEMLLKR 144


>gi|195352556|ref|XP_002042778.1| GM17665 [Drosophila sechellia]
 gi|194126809|gb|EDW48852.1| GM17665 [Drosophila sechellia]
          Length = 473

 Score = 41.5 bits (95), Expect = 0.092,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 186 DPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224
           D  F  +        +    + +K+ AEQ AA   L   G
Sbjct: 419 DKLFRSICTYDDQRFSSSYWEKNKKQAEQGAALVALLHLG 458


>gi|82469806|gb|ABB77161.1| R2D2 [Drosophila orosa]
          Length = 304

 Score = 41.5 bits (95), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-- 207
                RD   EL+++        P  ++  +SG  + P F     ++ +        S  
Sbjct: 80  MTNLNRDMLKELRDYCVRNEMPLPIIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDK 136

Query: 208 KRAAEQVAAAEVL 220
           K+ A Q AA ++L
Sbjct: 137 KKDARQRAAIDML 149



 Score = 38.0 bits (86), Expect = 0.98,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   V +  +    G   SKR A+ +AAA +L++ 
Sbjct: 19  YVCKVSMMEIESF-GNGRSKRDAKHLAAANILRKI 52


>gi|290562119|gb|ADD38456.1| 39S ribosomal protein L44, mitochondrial [Lepeophtheirus salmonis]
          Length = 328

 Score = 41.5 bits (95), Expect = 0.098,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 71/233 (30%), Gaps = 15/233 (6%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSI------------SHSYQESYERLEFLGDRIL 51
           +    L  R+  +F N  L+ +AL   +                 + S  RL  LG  ++
Sbjct: 74  VELFALGARLRESF-NFELVREALRDPTFYLVSMKEKIDLSLKDSEASNTRLVELGREVI 132

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
              ++  L   F       +      L+S    +  A  + L   +  S +      +  
Sbjct: 133 SASLNDFLTKTFPKVPSDGIIAFQEYLMSPYVLASKALHIGLKDLVV-SQEYPPSKNTLS 191

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
            +  A +     +        ++    V        L      ++    L +        
Sbjct: 192 NAFCALIGAHSESGNNRRQSYQLVVDLVATQIIGMDLHDVWKIQNPMDYLSKILAENNMK 251

Query: 172 TPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            PE ++ + SG +     + V +  +     +    S   A  +AA + L+R 
Sbjct: 252 EPEPRLQWASGKNTLSASYHVGIYSNQSLIGECTGESIETARDMAALDTLRRM 304


>gi|164606342|gb|ABY62316.1| Dicer-2-like protein [Bombyx mori]
          Length = 149

 Score = 41.5 bits (95), Expect = 0.098,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI 32
           + +EK + Y F + + L  AL+HSS 
Sbjct: 123 ADVEKILNYTFKDSTFLLNALSHSSY 148


>gi|327277433|ref|XP_003223469.1| PREDICTED: ATP-dependent RNA helicase A-like [Anolis carolinensis]
          Length = 1253

 Score = 41.5 bits (95), Expect = 0.099,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 1/58 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
                          G     +F   V ++G      G   +K+ A+  AA + L   
Sbjct: 12  CGKRKLTPAYEIRAVGNKTRQKFMCEVRVAGFNYIGMGNSTNKKDAQTNAARDFLNYL 69


>gi|195034168|ref|XP_001988838.1| GH10357 [Drosophila grimshawi]
 gi|193904838|gb|EDW03705.1| GH10357 [Drosophila grimshawi]
          Length = 317

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KR 209
              RD   EL+++   +    P  ++  +SG    P F     ++ +        S  K+
Sbjct: 98  NMNRDMLKELRDYCVRQDMPLPTIEIVQQSGTPSAPEFVACCSVASIKR---YGKSDKKK 154

Query: 210 AAEQVAAAEVL 220
            A Q AA E+L
Sbjct: 155 DARQRAAIEML 165



 Score = 38.8 bits (88), Expect = 0.57,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   V +  +  A G   SKR A+ +AA  ++++ 
Sbjct: 34  YICKVVLMDVE-AYGNGRSKRDAKHLAATNIMRKL 67


>gi|149637182|ref|XP_001509697.1| PREDICTED: similar to NF-kappaB repressing factor [Ornithorhynchus
           anatinus]
          Length = 680

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 6/47 (12%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE-----GIWT 227
           +  +   V +     A+G   SK+ ++  AA E L+        I T
Sbjct: 362 NRTWRCRVYLQDHCLAEGYG-SKKTSKHAAADEALRILQKTQSNIPT 407


>gi|302788362|ref|XP_002975950.1| hypothetical protein SELMODRAFT_104739 [Selaginella moellendorffii]
 gi|300156226|gb|EFJ22855.1| hypothetical protein SELMODRAFT_104739 [Selaginella moellendorffii]
          Length = 479

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 17/121 (14%)

Query: 8   TLEKRIGYA--FANRSL-------------LEKALTHSSI--SHSYQESYERLEFLGDRI 50
            +   +GY     + +L             L+    H S   +   +  YERLEF+G +I
Sbjct: 293 KVMDILGYPLDVRDENLDMTEAREIELGLGLQLCFMHPSAYKNDHPRFCYERLEFIGSKI 352

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
             ++++  L      A    L+     +     C +  R   L  FI    + + +    
Sbjct: 353 QDVVMAERLLMKHLDAPAIFLNRIHRGITINRICGRRLRMKRLHKFITYGEERQLEFARC 412

Query: 111 M 111
            
Sbjct: 413 H 413


>gi|328722076|ref|XP_003247474.1| PREDICTED: hypothetical protein LOC100169140 isoform 2
           [Acyrthosiphon pisum]
          Length = 342

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 12/113 (10%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            + +A   L    E+         ++      K     K                 ++  
Sbjct: 213 FASLAMHNLIHQWELQPVSKAINLQEEQPNVLKSPPKPKAGAMRKFPEDPKNCNPIQLIN 272

Query: 180 RSGPDHD-----------PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +  P                F V  EI  +    G   +K+AA++      +K
Sbjct: 273 QMKPGVKFIETVISSKTPSVFQVKCEIDNIPF-TGQGSTKKAAKKECCIAAIK 324


>gi|322705596|gb|EFY97181.1| hypothetical protein MAA_07477 [Metarhizium anisopliae ARSEF 23]
          Length = 200

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 7  STLEKRIGYAFANRSLLEKALTH-----SSISHSYQESYERLEFLGDRILG 52
          + +E  + Y F + +LLE+AL            + ++  + L  +GD +L 
Sbjct: 4  NQIEHALQYKFKDPALLEEALVAAGAGPKKAKTAREKGNKVLALIGDALLR 54


>gi|302698221|ref|XP_003038789.1| expressed protein [Schizophyllum commune H4-8]
 gi|300112486|gb|EFJ03887.1| expressed protein [Schizophyllum commune H4-8]
          Length = 409

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 19/37 (51%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            + +V + +G+   +G   +K+ A++ AA +     G
Sbjct: 371 HWIMVCKANGIPKGRGFGKTKQIAKEFAARQAFTALG 407


>gi|221104212|ref|XP_002155760.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 363

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERL 43
               + R+   F +  L+  AL+HSS     +   E+L
Sbjct: 85  IKAFQFRLNTHFKDEGLMISALSHSSFVDELKLFNEQL 122


>gi|255729534|ref|XP_002549692.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240132761|gb|EER32318.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 390

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           P+F   V +      +G+  S + AE  A    L
Sbjct: 320 PQFLAGVFVGSEKLGEGIGGSLKEAETRATVNAL 353


>gi|302770230|ref|XP_002968534.1| hypothetical protein SELMODRAFT_145591 [Selaginella moellendorffii]
 gi|300164178|gb|EFJ30788.1| hypothetical protein SELMODRAFT_145591 [Selaginella moellendorffii]
          Length = 473

 Score = 41.5 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 17/121 (14%)

Query: 8   TLEKRIGYA--FANRSL-------------LEKALTHSSI--SHSYQESYERLEFLGDRI 50
            +   +GY     + +L             L+    H S   +   +  YERLEF+G +I
Sbjct: 287 KVMDILGYPLDVRDENLDMTEAREIELGLGLQLCFMHPSAYKNDHPRFCYERLEFIGSKI 346

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
             ++++  L      A    L+     +     C +  R   L  FI    + + +    
Sbjct: 347 QDVVMAERLLMKHLDAPAIFLNRIHRGITINRICGRRLRMKRLHKFITYGEERQLEFARC 406

Query: 111 M 111
            
Sbjct: 407 H 407


>gi|328722074|ref|XP_001945290.2| PREDICTED: hypothetical protein LOC100169140 isoform 1
           [Acyrthosiphon pisum]
          Length = 381

 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 12/113 (10%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            + +A   L    E+         ++      K     K                 ++  
Sbjct: 252 FASLAMHNLIHQWELQPVSKAINLQEEQPNVLKSPPKPKAGAMRKFPEDPKNCNPIQLIN 311

Query: 180 RSGPDHD-----------PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +  P                F V  EI  +    G   +K+AA++      +K
Sbjct: 312 QMKPGVKFIETVISSKTPSVFQVKCEIDNIPF-TGQGSTKKAAKKECCIAAIK 363


>gi|255085362|ref|XP_002505112.1| predicted protein [Micromonas sp. RCC299]
 gi|226520381|gb|ACO66370.1| predicted protein [Micromonas sp. RCC299]
          Length = 514

 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 190 TVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           T    +  G    +G   +K+ A   AA + L+  
Sbjct: 415 TATCILDDGETIGRGRGVNKKRAIMEAARDALRHL 449


>gi|222619424|gb|EEE55556.1| hypothetical protein OsJ_03820 [Oryza sativa Japonica Group]
          Length = 511

 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 52/186 (27%), Gaps = 14/186 (7%)

Query: 22  LLEKALTH--SSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           LL  A  H  +S   +        + RL FLG  +L L         +     G +  R 
Sbjct: 142 LLYLAFQHLDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 201

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            +L+      +  +   L + +    DL K +          V  +L  A+YL  G+   
Sbjct: 202 FALIGKRAIPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEV 261

Query: 136 GT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDP 187
               F                R    ++   +         ++      P       H  
Sbjct: 262 YRVLFEAFGMDPEDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPR 321

Query: 188 RFTVVV 193
            F   V
Sbjct: 322 LFRACV 327


>gi|218189252|gb|EEC71679.1| hypothetical protein OsI_04153 [Oryza sativa Indica Group]
          Length = 559

 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 52/186 (27%), Gaps = 14/186 (7%)

Query: 22  LLEKALTH--SSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           LL  A  H  +S   +        + RL FLG  +L L         +     G +  R 
Sbjct: 164 LLYLAFQHLDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 223

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            +L+      +  +   L + +    DL K +          V  +L  A+YL  G+   
Sbjct: 224 FALIGKRAIPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEV 283

Query: 136 GT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDP 187
               F                R    ++   +         ++      P       H  
Sbjct: 284 YRVLFEAFGMDPEDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPR 343

Query: 188 RFTVVV 193
            F   V
Sbjct: 344 LFRACV 349


>gi|115440603|ref|NP_001044581.1| Os01g0810100 [Oryza sativa Japonica Group]
 gi|20160696|dbj|BAB89639.1| unknown protein [Oryza sativa Japonica Group]
 gi|113534112|dbj|BAF06495.1| Os01g0810100 [Oryza sativa Japonica Group]
 gi|215701330|dbj|BAG92754.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704464|dbj|BAG93898.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 533

 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 52/186 (27%), Gaps = 14/186 (7%)

Query: 22  LLEKALTH--SSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           LL  A  H  +S   +        + RL FLG  +L L         +     G +  R 
Sbjct: 164 LLYLAFQHLDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 223

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            +L+      +  +   L + +    DL K +          V  +L  A+YL  G+   
Sbjct: 224 FALIGKRAIPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEV 283

Query: 136 GT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDP 187
               F                R    ++   +         ++      P       H  
Sbjct: 284 YRVLFEAFGMDPEDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPR 343

Query: 188 RFTVVV 193
            F   V
Sbjct: 344 LFRACV 349


>gi|312095309|ref|XP_003148313.1| hypothetical protein LOAG_12753 [Loa loa]
 gi|307756522|gb|EFO15756.1| hypothetical protein LOAG_12753 [Loa loa]
          Length = 265

 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 10/25 (40%)

Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223
               G   SK+ A+  AA   LK  
Sbjct: 5   VLGTGCGNSKKTAKLDAARNALKVL 29


>gi|291390365|ref|XP_002711677.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog
           [Oryctolagus cuniculus]
          Length = 493

 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 50/181 (27%), Gaps = 2/181 (1%)

Query: 47  GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
           G R L  ++   +            +      +  E        L  A+           
Sbjct: 256 GLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESSQGRLLHAAQSSQEICEAFG 315

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
           + +F   +   +       L                  + A+K  +     +   +    
Sbjct: 316 LGAFYKEMTQKLDARRAELLARTPKETKEPAEDTSGVIKMAVKFDRRAYAPQITPKMCLL 375

Query: 167 AKFGVTPEYKVTFRS-GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224
                    + T+ +     D  F  VV ++     +   D SK+ AEQ AA   L+ +G
Sbjct: 376 EWCRREKLAQPTYETVQRPLDRLFCSVVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQG 435

Query: 225 I 225
           +
Sbjct: 436 L 436


>gi|254569420|ref|XP_002491820.1| hypothetical protein [Pichia pastoris GS115]
 gi|238031617|emb|CAY69540.1| Hypothetical protein PAS_chr2-2_0365 [Pichia pastoris GS115]
 gi|328351680|emb|CCA38079.1| hypothetical protein PP7435_Chr2-0386 [Pichia pastoris CBS 7435]
          Length = 349

 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 64/217 (29%), Gaps = 10/217 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               L K     F N++LL K L     + S  ++ + L +LG +    L+S  L     
Sbjct: 134 DIDRLPKLKNETFENKALLHKKLV---SNDSSVQTNDSLVYLGSKFCHCLVSFKLNELHP 190

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           S          +  V             L    R   + +     F   + A+   + +A
Sbjct: 191 SLDAE----LLDCAVQEVLHFNNVHIWALRLNFRELLESKFPAKQFRPKVMAECFMAYVA 246

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           AL ++ G +     +   W  +      ++   +  +   A               +   
Sbjct: 247 ALKIETGSDYNLLTLLTQWILKLASEKIYKLRVENLVDRSAKDSLHKLMGPMRYATAFNG 306

Query: 185 HDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVL 220
               F      + G     G   +K  +E  +A   L
Sbjct: 307 SK--FISKCLNNKGEVLGHGSGYNKTDSELRSAMHAL 341


>gi|326673261|ref|XP_003199818.1| PREDICTED: adenosine deaminase domain-containing protein 1 [Danio
           rerio]
          Length = 597

 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F     I G+    GM  +K+ A   A+   LK  
Sbjct: 145 FAFCAVIDGIQYKTGMGTTKKEARAKASELALKEL 179


>gi|148744644|gb|AAI42886.1| LOC564818 protein [Danio rerio]
          Length = 575

 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F     I G+    GM  +K+ A   A+   LK  
Sbjct: 123 FAFCAVIDGIQYKTGMGTTKKEARAKASELALKEL 157


>gi|145244913|ref|XP_001394726.1| hypothetical protein ANI_1_2256094 [Aspergillus niger CBS 513.88]
 gi|134079418|emb|CAK40799.1| unnamed protein product [Aspergillus niger]
          Length = 228

 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           P+F + +   G+  A G   +K+ A+ +AA  V  R G+
Sbjct: 188 PKFRITISYKGIQ-ASGEGKTKKLAKHIAAKGVCHRLGL 225


>gi|297699046|ref|XP_002826610.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine synthase 2-like
           [Pongo abelii]
          Length = 493

 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKR 209
              +   K  L EW   +    P Y+   R     D  F+ +V ++     +   D SK+
Sbjct: 364 YPAQITPKMCLLEWCRREKLAQPVYETVQR---PVDRLFSSIVTVAEQKYQSTLWDKSKK 420

Query: 210 AAEQVAAAEVLKREGI 225
            AEQ AA   L+ +G+
Sbjct: 421 LAEQAAAIVCLRSQGL 436


>gi|320583778|gb|EFW97991.1| Mitochondrial ribosomal protein of the large subunit [Pichia
           angusta DL-1]
          Length = 237

 Score = 41.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 9   LEKRI--GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           L+ ++   Y   ++ LL + +TH S +H  Q    RL + G  ++ L  +  
Sbjct: 72  LQSKLQGKYELPDK-LLLQIITHKSFAHGTQPYNARLSYFGRELIQLSAAKY 122


>gi|158341356|ref|YP_001522521.1| double-stranded RNA binding domain-containing protein
           [Acaryochloris marina MBIC11017]
 gi|158311597|gb|ABW33207.1| double-stranded RNA binding motif domain protein [Acaryochloris
           marina MBIC11017]
          Length = 148

 Score = 41.1 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 51/151 (33%), Gaps = 6/151 (3%)

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             +             ++   +++  + D    +   +   +   +      + +    +
Sbjct: 1   MRSQHSHNLNIHITEEQIGFLAYLFPNDDPEDALVKLLERARKQAIRQAEKQIRVLHLGQ 60

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
            +     +  ++   +   +  +   +LQE    +    P Y  + R  P+    F+  V
Sbjct: 61  ESEENQGEIPEKPISQGDDWVENPIGQLQELCQKQQITLPRYGFSER--PNG---FSCNV 115

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  GL    G   SK+ A+  AA E+L +  
Sbjct: 116 QAMGLQE-NGEGSSKQEAKTKAARELLSKIN 145


>gi|260828967|ref|XP_002609434.1| hypothetical protein BRAFLDRAFT_124637 [Branchiostoma floridae]
 gi|229294790|gb|EEN65444.1| hypothetical protein BRAFLDRAFT_124637 [Branchiostoma floridae]
          Length = 1237

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
           G     RF   V + G      G   SK+ A+  AA +
Sbjct: 27  GSKQRQRFVCEVRVPGYDYVGAGNSTSKKDAQTNAARD 64


>gi|168984491|emb|CAO98759.1| double-stranded RNA activated protein kinase 1 [Gasterosteus
           aculeatus]
          Length = 497

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
           Y+     G DH   FTV   + G     G+  +KR 
Sbjct: 19  YEDVGCVGLDHIKTFTVRAVVDGKPYPDGVGKNKRE 54


>gi|289739511|gb|ADD18503.1| ultrabithorax binding protein 1 [Glossina morsitans morsitans]
          Length = 411

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F  VV ++G    +G   SK AA+  A  + L+
Sbjct: 187 FVTVVTVNGNQY-EGRGNSKMAAKNNACEKALR 218


>gi|242018043|ref|XP_002429492.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212514430|gb|EEB16754.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 426

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 2/65 (3%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
             + E   +        K  F  GP++       +  +    A G   + + +++ AA  
Sbjct: 186 HPISEIQRSAIINRVTPKWCFDVGPENSKI--CKIYFNNTFIASGKGKTTKLSKENAAIS 243

Query: 219 VLKRE 223
            + + 
Sbjct: 244 AISKL 248


>gi|321463684|gb|EFX74698.1| hypothetical protein DAPPUDRAFT_251621 [Daphnia pulex]
          Length = 308

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +EK +GY F + S L  A+   + +     +   +LE +GDR L L+I     +      
Sbjct: 16  IEKMLGYRFTDESWLHMAIQQPTANVRNAAKEAGKLELIGDRALDLIIVDECESRKPEYG 75

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRV 99
            G+L+   ++L    T + +A + +L   ++ 
Sbjct: 76  AGQLTTVKSALTCNNTLAVIAIKKNLHLVMQQ 107


>gi|260099980|pdb|3HTX|A Chain A, Crystal Structure Of Small Rna Methyltransferase Hen1
 gi|260099983|pdb|3HTX|D Chain D, Crystal Structure Of Small Rna Methyltransferase Hen1
          Length = 950

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 17/37 (45%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           +   +++   +    +   K+ +EQ AA   L + GI
Sbjct: 59  YRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDKLGI 95


>gi|15638615|gb|AAL05056.1|AF411383_1 HEN1 [Arabidopsis thaliana]
          Length = 942

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 17/37 (45%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           +   +++   +    +   K+ +EQ AA   L + GI
Sbjct: 51  YRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDKLGI 87


>gi|3135493|gb|AAC97105.1| unknown [Arabidopsis thaliana]
          Length = 942

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 17/37 (45%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           +   +++   +    +   K+ +EQ AA   L + GI
Sbjct: 51  YRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDKLGI 87


>gi|18415589|ref|NP_567616.1| HEN1 (HUA ENHANCER 1); RNA methyltransferase [Arabidopsis thaliana]
 gi|75333381|sp|Q9C5Q8|HEN1_ARATH RecName: Full=Small RNA 2'-O-methyltransferase; AltName:
           Full=Protein CORYMBOSA 2; AltName: Full=Protein HUA
           ENHANCER 1; AltName: Full=S-adenosylmethionine-dependent
           RNA methyltransferase HEN1
 gi|13241746|gb|AAK16435.1|AF327068_1 CORYMBOSA2 [Arabidopsis thaliana]
 gi|332658974|gb|AEE84374.1| RNA methylase HUA ENHANCER 1 [Arabidopsis thaliana]
 gi|332658975|gb|AEE84375.1| RNA methylase HUA ENHANCER 1 [Arabidopsis thaliana]
          Length = 942

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 17/37 (45%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           +   +++   +    +   K+ +EQ AA   L + GI
Sbjct: 51  YRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDKLGI 87


>gi|261328153|emb|CBH11130.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 382

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 12/108 (11%)

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +  L    E            R   + ++      +   ++  +           R GP 
Sbjct: 273 SQELRKAREEKQEKKYMSDLLRDECTTRWPHTPVHKSVIFSLEEQQAETVGGRPGRKGP- 331

Query: 185 HDPRFTVVVEI---SGLAPAQGMDC------SKRAAEQVAAAEVLKRE 223
               +   VE+   +G               +K+ AE  AA   L+  
Sbjct: 332 --RMYLATVELPLLNGKKGGTASFKAPQWCTTKKDAENAAAEVALRAL 377


>gi|72389150|ref|XP_844870.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62358643|gb|AAX79101.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70801404|gb|AAZ11311.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 380

 Score = 41.1 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 12/108 (11%)

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +  L    E            R   + ++      +   ++  +           R GP 
Sbjct: 271 SQELRKAREEKQEKKYMSDLLRDECTTRWPHTPVHKSVIFSLEEQQAETVGGRPGRKGP- 329

Query: 185 HDPRFTVVVEI---SGLAPAQGMDC------SKRAAEQVAAAEVLKRE 223
               +   VE+   +G               +K+ AE  AA   L+  
Sbjct: 330 --RMYLATVELPLLNGKKGGTASFKAQQWCTTKKDAENAAAEVALRAL 375


>gi|312073196|ref|XP_003139411.1| dihydrouridine synthase domain-containing protein [Loa loa]
 gi|307765423|gb|EFO24657.1| dihydrouridine synthase domain-containing protein [Loa loa]
          Length = 439

 Score = 41.1 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLKREG 224
           D R+   +E+     +  +   +K+ AEQVAA   L   G
Sbjct: 388 DKRYEATIEVDSRKFSSRIGQPNKKMAEQVAALAALVGLG 427


>gi|332227763|ref|XP_003263057.1| PREDICTED: tRNA-dihydrouridine synthase 2 [Nomascus leucogenys]
          Length = 540

 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225
           D  F+ +V ++     +   D SK+ AEQ AA   L+ +G+
Sbjct: 443 DRLFSSIVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 483


>gi|321450358|gb|EFX62407.1| hypothetical protein DAPPUDRAFT_270469 [Daphnia pulex]
          Length = 140

 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           D  F VV+E+       G   S +AA+  AA   ++R 
Sbjct: 55  DGNFHVVLEVQNTQYFHGSGPSLKAAKTTAAKLGIRRI 92


>gi|194383804|dbj|BAG59260.1| unnamed protein product [Homo sapiens]
          Length = 458

 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225
           D  F+ +V ++     +   D SK+ AEQ AA   L+ +G+
Sbjct: 361 DRLFSSIVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 401


>gi|90083447|dbj|BAE90806.1| unnamed protein product [Macaca fascicularis]
          Length = 493

 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225
           D  F+ +V ++     +   D SK+ AEQ AA   L+ +G+
Sbjct: 396 DRLFSSIVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 436


>gi|114663254|ref|XP_001166802.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 5
           [Pan troglodytes]
          Length = 477

 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225
           D  F+ +V ++     +   D SK+ AEQ AA   L+ +G+
Sbjct: 380 DRLFSSIVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 420


>gi|114663256|ref|XP_001166706.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 2
           [Pan troglodytes]
          Length = 406

 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225
           D  F+ +V ++     +   D SK+ AEQ AA   L+ +G+
Sbjct: 309 DRLFSSIVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 349


>gi|114663240|ref|XP_001166638.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 1
           [Pan troglodytes]
 gi|114663242|ref|XP_001166736.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 3
           [Pan troglodytes]
 gi|114663244|ref|XP_001166768.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 4 [Pan
           troglodytes]
 gi|114663246|ref|XP_001166835.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 6
           [Pan troglodytes]
 gi|114663248|ref|XP_001166866.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 7
           [Pan troglodytes]
 gi|114663250|ref|XP_001166896.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 8
           [Pan troglodytes]
 gi|114663252|ref|XP_001166928.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 9
           [Pan troglodytes]
          Length = 493

 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225
           D  F+ +V ++     +   D SK+ AEQ AA   L+ +G+
Sbjct: 396 DRLFSSIVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 436


>gi|109128993|ref|XP_001097732.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Macaca mulatta]
          Length = 492

 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225
           D  F+ +V ++     +   D SK+ AEQ AA   L+ +G+
Sbjct: 395 DRLFSSIVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 435


>gi|47201631|emb|CAF92245.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 65

 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 186 DPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225
           D  F  VV ++         + SK+ AEQ AA   L+  G+
Sbjct: 5   DRSFQSVVTVAHKKYRSSLWEKSKKLAEQAAAIVCLRVLGL 45


>gi|465431|sp|P34717|NSP3_ROTBS RecName: Full=Non-structural protein 3; Short=NSP3; Contains:
           RecName: Full=p38; Contains: RecName: Full=p8
          Length = 402

 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           D    +   +++ G A A G  CSK+ A++ AA  +L + G
Sbjct: 362 DGSIMYICYLKV-GSAEATGNGCSKKEAKRRAAVSILDQLG 401


>gi|8923374|ref|NP_060273.1| tRNA-dihydrouridine synthase 2-like [Homo sapiens]
 gi|73620832|sp|Q9NX74|DUS2L_HUMAN RecName: Full=tRNA-dihydrouridine synthase 2-like; Short=hDUS2;
           AltName: Full=Up-regulated in lung cancer protein 8;
           Short=URLC8
 gi|7020473|dbj|BAA91143.1| unnamed protein product [Homo sapiens]
 gi|16306804|gb|AAH06527.1| Dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) [Homo
           sapiens]
 gi|71006842|dbj|BAE07219.1| up-regulated in lung cancer 8 [Homo sapiens]
 gi|119603613|gb|EAW83207.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae),
           isoform CRA_a [Homo sapiens]
 gi|119603614|gb|EAW83208.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae),
           isoform CRA_a [Homo sapiens]
 gi|119603615|gb|EAW83209.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae),
           isoform CRA_a [Homo sapiens]
 gi|158254588|dbj|BAF83267.1| unnamed protein product [Homo sapiens]
 gi|312152458|gb|ADQ32741.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)
           [synthetic construct]
          Length = 493

 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225
           D  F+ +V ++     +   D SK+ AEQ AA   L+ +G+
Sbjct: 396 DRLFSSIVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 436


>gi|291222158|ref|XP_002731085.1| PREDICTED: ATP-dependent RNA helicase A-like protein-like
           [Saccoglossus kowalevskii]
          Length = 1325

 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
           G  H  RF   V +        G   SK+ A+   A +
Sbjct: 27  GSKHRQRFMCEVRVQDYDYIGVGNSTSKKDAQANCARD 64


>gi|149412383|ref|XP_001508965.1| PREDICTED: similar to 65 kD protein kinase [Ornithorhynchus
           anatinus]
          Length = 546

 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 151 GKFRRDAKTELQEWAHAKFGV--TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                + +                  Y+   ++GPDH+ +FT+ V I G    +    S
Sbjct: 1   MANAPEPRIHSAHLHEYCQKRGLKLVYRDVSKTGPDHNLQFTIQVIIEGREFPEASGSS 59


>gi|327409791|ref|YP_004347211.1| putative ribonuclease III [Lausannevirus]
 gi|326784965|gb|AEA07099.1| putative ribonuclease III [Lausannevirus]
          Length = 319

 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%)

Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           N +    A TH ++      +YE  E LGD ++   I   + +      + E   R   
Sbjct: 29 NNLAKFRVAFTHKTVQSGDDNNYELYELLGDSLVNAAILRYISSIRPDITDVETLTRIKH 88

Query: 78 LVSAETC 84
           + +   
Sbjct: 89 YIQSRAF 95


>gi|260833280|ref|XP_002611585.1| hypothetical protein BRAFLDRAFT_117159 [Branchiostoma floridae]
 gi|229296956|gb|EEN67595.1| hypothetical protein BRAFLDRAFT_117159 [Branchiostoma floridae]
          Length = 351

 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 62/223 (27%), Gaps = 20/223 (8%)

Query: 19  NRSLLEKALTHSSISHSYQ-----------------ESYERLEFLGDRILGLLISTLLFN 61
           N S L  A    S     +                 +   +L   G ++    I + L  
Sbjct: 98  NLSTLRAAFIDRSYVKEEEERRRELSLPLEDVKLDMQDNSQLAEQGWQVTTNYIHSFLRA 157

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    +  +    + +   +    +A  L +   IR S+            +   V+ +
Sbjct: 158 EFPLLPDEGVKAIHDYVTQEDMLVWIANHLGVKDLIRCSTFPIPP--PVTKQVFLAVIGA 215

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +               FV      + + +     +    L E         PE +V  +S
Sbjct: 216 VNHDQGSQRAETFVHDFVVAQLVGKDVNAMWDIPNPMGMLAEMLQKAGKGEPEPRVINQS 275

Query: 182 GPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G +   P F V V  +     +    +   A + AA   L   
Sbjct: 276 GANTVTPVFFVGVYSNKELLGEASGDTMPLAVEEAARVALANM 318


>gi|301775697|ref|XP_002923269.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Ailuropoda
           melanoleuca]
          Length = 122

 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225
           D  F  VV ++     +   D SK+ AEQ AA   L+  G+
Sbjct: 25  DRLFCSVVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSRGL 65


>gi|73957464|ref|XP_546866.2| PREDICTED: similar to dihydrouridine synthase 2-like (SMM1, S.
           cerevisiae) [Canis familiaris]
          Length = 560

 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225
           D  F  VV ++     +   D SK+ AEQ AA   L+  G+
Sbjct: 463 DRLFCSVVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSRGL 503


>gi|223992605|ref|XP_002285986.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977301|gb|EED95627.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 711

 Score = 40.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 201 AQGMDCSKRAAEQVAAAEVLKRE 223
             G   +K+ A+  AA  +LK+ 
Sbjct: 680 GTGEGTTKKQAQHKAAMIILKQL 702


>gi|221109699|ref|XP_002169974.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 349

 Score = 40.7 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 37/221 (16%)

Query: 6   YSTLEKRIGYAFANRSLLEKALT--HSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  ++  +G    + +L++  LT  HS     +  S +    +         + +  N+ 
Sbjct: 23  FDDIKNILGI--HDSNLVQGLLTDLHSQYLIEFT-SNQHYRLI---------TGIYHNYP 70

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                   S     +V+      +    ++A  +  S+    +    +     +  +S +
Sbjct: 71  APMNNINYSDNVAPMVNQPNSYNINYGENVAPMVNPSNSYNVNYGESIQQQMINQPKSAV 130

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
             +YL G  +                          ++       +     +  T   G 
Sbjct: 131 PVIYLPGTNKFCSYKNSLQEY----CQKSRLPTPSYKVVLSGPGMYIGNVTFNNTLVHG- 185

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                 TV   I             + AE  AA E LK+ G
Sbjct: 186 ------TVAYRI------------IKEAENNAAFEALKQLG 208


>gi|195391980|ref|XP_002054637.1| GJ24564 [Drosophila virilis]
 gi|194152723|gb|EDW68157.1| GJ24564 [Drosophila virilis]
          Length = 321

 Score = 40.7 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 69/232 (29%), Gaps = 19/232 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRI 50
                KR+   F    LL+ A T  + +H  QE                  +L   G  I
Sbjct: 67  LFAFGKRLNEEFQ-LPLLQTAFTQRTYAHQEQERQRMLGIAEADLQTADNSQLAAKGAHI 125

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
               +   L +              + L+  ET + V+  L     I  +          
Sbjct: 126 AKAYVEAYLQHALPKVPSAGHQAIASYLLGTETLAHVSTHLGTKELIFSTEYP--PSSET 183

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
           +      ++ +L  +  ++        F+     Q+ L            L E    +  
Sbjct: 184 LAQTLQAIIGALADSSGVERAFLFVRDFICTQLNQKDLLEIWTPEQPLQLLSEVCTERQL 243

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             PE ++    G +     F V +  +     +G   + + A + AA + L+
Sbjct: 244 GEPEPRLLGDCGKNTVLAAFQVGIYANRQLLGKGFGENVQTATETAAIDALQ 295


>gi|146318846|ref|YP_001198558.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33]
 gi|145689652|gb|ABP90158.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33]
          Length = 42

 Score = 40.7 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 1  MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ 37
          M  L ++ L    G  F++ +LLE A TH+S ++ ++
Sbjct: 1  MKDL-HAKLLADFGIDFSDLNLLETAFTHTSYANEHR 36


>gi|289740327|gb|ADD18911.1| mitochondrial ribosomal protein L44 [Glossina morsitans morsitans]
          Length = 325

 Score = 40.7 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 75/238 (31%), Gaps = 27/238 (11%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---------------ESYERLEFLGDRI 50
                KR+   F    LL+ ALT  S     +               +    L   G R+
Sbjct: 67  LFAFGKRLNEDFQVP-LLQTALTQESYVAKEKLKQEELGVENADIQLKHNAELAEHGQRL 125

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
               I   + +              + L++ +T + VA  L +   +  +          
Sbjct: 126 AKAYIEAFVAHSLPKMPAEGHKAVTSYLLTVDTLAHVALHLGMKELLMDADYPPSSDA-- 183

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK----QRALKSGKFRRDAKTELQEWAH 166
                +  + ++I  L    G+E A +FV  +      Q+ L         +  L++   
Sbjct: 184 ----MSRSLLAVIGCLQQSSGLERAFSFVRDFICTQLNQKDLMEIWHIDKPEEVLKQVCR 239

Query: 167 AKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            K    PE ++    G +     + V +  +     +G       A Q+AA + L+  
Sbjct: 240 QKGISEPEPRLIADCGRNTILAAYFVGLYSNKKLLGKGFGEDINTATQLAALDALQTI 297


>gi|149038073|gb|EDL92433.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)
           (predicted), isoform CRA_b [Rattus norvegicus]
          Length = 380

 Score = 40.7 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKR 209
              +   KT L EW   +    P Y+   R     D  F  VV ++     +   D SK+
Sbjct: 251 YPPQITPKTCLLEWCRREKLPQPVYETVQR---PIDRMFCSVVTVAEQKYQSTLWDKSKK 307

Query: 210 AAEQVAAAEVLKREGI 225
            AEQ AA   L+ +G+
Sbjct: 308 LAEQTAAIVCLRSQGL 323


>gi|157818491|ref|NP_001099651.1| tRNA-dihydrouridine synthase 2-like [Rattus norvegicus]
 gi|149038072|gb|EDL92432.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)
           (predicted), isoform CRA_a [Rattus norvegicus]
 gi|165971659|gb|AAI58729.1| Dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)
           [Rattus norvegicus]
          Length = 493

 Score = 40.7 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKR 209
              +   KT L EW   +    P Y+   R     D  F  VV ++     +   D SK+
Sbjct: 364 YPPQITPKTCLLEWCRREKLPQPVYETVQR---PIDRMFCSVVTVAEQKYQSTLWDKSKK 420

Query: 210 AAEQVAAAEVLKREGI 225
            AEQ AA   L+ +G+
Sbjct: 421 LAEQTAAIVCLRSQGL 436


>gi|301776895|ref|XP_002923866.1| PREDICTED: adenosine deaminase domain-containing protein 1-like
           isoform 2 [Ailuropoda melanoleuca]
          Length = 566

 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 102 HQFAQMQRVHLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161

Query: 223 E 223
            
Sbjct: 162 L 162


>gi|301776893|ref|XP_002923865.1| PREDICTED: adenosine deaminase domain-containing protein 1-like
           isoform 1 [Ailuropoda melanoleuca]
          Length = 577

 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 102 HQFAQMQRVHLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161

Query: 223 E 223
            
Sbjct: 162 L 162


>gi|149699255|ref|XP_001498775.1| PREDICTED: similar to tRNA-dihydrouridine synthase 2-like (hDUS2)
           (Up-regulated in lung cancer) (URLC8) isoform 1 [Equus
           caballus]
          Length = 493

 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225
           D  F  VV ++     +   D SK+ AEQ AA   L+ +G+
Sbjct: 396 DRLFCSVVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 436


>gi|146180696|ref|XP_001470932.1| conserved hypothetical protein [Tetrahymena thermophila]
 gi|146144409|gb|EDK31487.1| conserved hypothetical protein [Tetrahymena thermophila SB210]
          Length = 1822

 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 34/71 (47%)

Query: 34   HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
             +Y    +RLEFLGD +L L+I   LFN F ++  GEL+    SLV  +T   +      
Sbjct: 1600 KNYNLCNQRLEFLGDAVLDLIIVEYLFNKFPNSDPGELTQMKTSLVQNKTLCLINLMKGF 1659

Query: 94   ASFIRVSSDLR 104
              FI  S    
Sbjct: 1660 YKFIIGSIQHN 1670


>gi|115495449|ref|NP_001068887.1| tRNA-dihydrouridine synthase 2-like [Bos taurus]
 gi|111308646|gb|AAI20343.1| Dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) [Bos
           taurus]
 gi|296477934|gb|DAA20049.1| dihydrouridine synthase 2-like, SMM1 homolog [Bos taurus]
          Length = 493

 Score = 40.7 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225
           D  F  VV ++     +   D SK+ AEQ AA   L+ +G+
Sbjct: 396 DRLFCSVVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGL 436


>gi|242059029|ref|XP_002458660.1| hypothetical protein SORBIDRAFT_03g037610 [Sorghum bicolor]
 gi|241930635|gb|EES03780.1| hypothetical protein SORBIDRAFT_03g037610 [Sorghum bicolor]
          Length = 529

 Score = 40.7 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 53/186 (28%), Gaps = 14/186 (7%)

Query: 22  LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           LL  A  H       + +   +  + RL FLG  +L L         +     G +  R 
Sbjct: 160 LLYLAFQHLDPSSERTRTRHVRNGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 219

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            +L+  +   +  +   L + +    DL K +          V  +L  A+YL  G+   
Sbjct: 220 FALIGKKVLPRWLKAASLHNLVFPYDDLDKMIRKDREPPSKAVFWALFGAIYLCFGMPEV 279

Query: 136 GT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDP 187
               F                R    ++   +         ++      P       H  
Sbjct: 280 YRVLFEAFGMDPDDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPR 339

Query: 188 RFTVVV 193
            F   V
Sbjct: 340 LFRACV 345



 Score = 38.0 bits (86), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 18  ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S       +  YERLE++G +I  L+++  L      A    L+
Sbjct: 386 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDLVMAERLLMKHLDAPGRWLA 445

Query: 73  VRFNSLVSAETCSQVARELDLASFIRV 99
            +    +  + C +  R+  L  +I  
Sbjct: 446 EKHRRTLMNKYCGRYLRDKHLQHYIIY 472


>gi|221114051|ref|XP_002158541.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 615

 Score = 40.7 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              ++   +L E+    F  T  +             F V V +  L    G   +K+ A
Sbjct: 381 PVIKNPLQKLYEYCQLHFKKTIAFNKLDECF---SGLFYVEVLVGFLRYGVGQGDNKKNA 437

Query: 212 EQVAAAEVLK 221
           +  AA   L+
Sbjct: 438 KYAAAQATLE 447


>gi|47227529|emb|CAG04677.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 349

 Score = 40.7 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F     I G+    G+  +K+ A   AA   L+
Sbjct: 46  FAFCALIDGVEHKTGIGKNKKEARLAAAQYALE 78


>gi|241950193|ref|XP_002417819.1| 60S ribosomal protein L15, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
 gi|223641157|emb|CAX45534.1| 60S ribosomal protein L15, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
          Length = 220

 Score = 40.7 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 2   SALRYSTLEKRIG--YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           +    + ++  +G  Y   +  +  + +TH S  +  +   E+L  +G ++L L  +  +
Sbjct: 54  NETNINHIKSFLGDKYNIPD-EIALQVITHKSFGNGIKPYNEKLAAMGSKLLSLYFAKYV 112

Query: 60  FNHFDSAKE 68
            N     + 
Sbjct: 113 TNQPCKHEN 121


>gi|198477035|ref|XP_002136790.1| GA22530 [Drosophila pseudoobscura pseudoobscura]
 gi|198145112|gb|EDY71816.1| GA22530 [Drosophila pseudoobscura pseudoobscura]
          Length = 153

 Score = 40.7 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 188 RFTVVVEISGLAPA--QGMDCSKRAAEQVAAAEVLKREGIWT 227
           +F  +V++S L      G   + R A++ AA   L+   I T
Sbjct: 110 QFQCLVQLSTLPVGVCHGTGPTAREAQRHAAQNALEYLKIMT 151


>gi|158340645|ref|YP_001521813.1| hypothetical protein AM1_D0002 [Acaryochloris marina MBIC11017]
 gi|158310886|gb|ABW32499.1| hypothetical protein AM1_D0002 [Acaryochloris marina MBIC11017]
          Length = 78

 Score = 40.7 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             T  ++    +    D  F    E+          G+   K+ A+ +AA E+L++ 
Sbjct: 6   CQTLRWETPVYTMVSSDEWFICECELSVLGQQLEGSGVAKKKKLAKSIAAREILEQL 62


>gi|302805889|ref|XP_002984695.1| hypothetical protein SELMODRAFT_423789 [Selaginella moellendorffii]
 gi|300147677|gb|EFJ14340.1| hypothetical protein SELMODRAFT_423789 [Selaginella moellendorffii]
          Length = 810

 Score = 40.3 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 188 RFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            F   VE+ +G          K+ AEQ AA + L   G
Sbjct: 41  TFYCKVELPNGAVVVSEPCRRKKDAEQDAARKALHEIG 78


>gi|290976137|ref|XP_002670797.1| predicted protein [Naegleria gruberi]
 gi|284084360|gb|EFC38053.1| predicted protein [Naegleria gruberi]
          Length = 656

 Score = 40.3 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 7   STLEKRIGYAFANRSLLEKALTH 29
            ++E  IGY F+N+S L  ALTH
Sbjct: 336 ESVEDIIGYTFSNKSYLMIALTH 358


>gi|145545985|ref|XP_001458676.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426497|emb|CAK91279.1| unnamed protein product [Paramecium tetraurelia]
          Length = 313

 Score = 40.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 26/234 (11%)

Query: 16  AFANRSLLEKALT---H------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            F N  LL +A T   H       +       + E     G ++L       +       
Sbjct: 7   EFRNTKLLVQAFTNKIHEIEYFQKTGQQYQYGNNEDFSIAGQQLLEFYFYDYMLLQGFPN 66

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC---SFMTSIQADVVESLI 123
           ++ +     + +   +         ++A  + + + L             + +D V+S+I
Sbjct: 67  QQSQFKKPSDIIQLRQRLINDKYLSEIAILLSIQNLLNIGNQKSLKNNPKVLSDCVKSII 126

Query: 124 AALYLDGGIEVAGTFVDKY-------WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            A Y D   ++       +        K   +   +++ + K+   E+ ++  G      
Sbjct: 127 GAHYYDKQNDLEALRDIIHPIVVQLLNKGEQITRTQWKYNPKSSFLEYLNSYKGELNINP 186

Query: 177 VTFRSGP-------DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                          +   + + +E++     Q +  +KR  EQ    E L + 
Sbjct: 187 KLTIEWKKDDSILNQNKSLYLISLELNSTMKVQKVGINKRETEQSVYLEALLQL 240


>gi|321466884|gb|EFX77877.1| hypothetical protein DAPPUDRAFT_321006 [Daphnia pulex]
          Length = 131

 Score = 40.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-----AQGMDCSKRAAE 212
              L +       + PEY +T  SGP H   F V +++  ++         +  S + A+
Sbjct: 16  PMCLVDELPCHHEIQPEYCLTEESGPVHQKTFVVNLKLGKISFKKQFPIVQVAQSTKKAQ 75

Query: 213 QVAAAEVLKR 222
             AA   LK+
Sbjct: 76  HAAAVLALKK 85


>gi|317156819|ref|XP_001826034.2| hypothetical protein AOR_1_658054 [Aspergillus oryzae RIB40]
          Length = 216

 Score = 40.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           RF + ++  G+  A G   +K+ A  +AA  V +R  +
Sbjct: 176 RFRITIQYCGVE-ASGEGRNKKTARHLAARRVCERLNL 212


>gi|297699341|ref|XP_002826745.1| PREDICTED: adenosine deaminase domain-containing protein 2-like
           isoform 2 [Pongo abelii]
          Length = 662

 Score = 40.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V  E+ G+    G   SK  A+Q AA   L
Sbjct: 214 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 245


>gi|297699339|ref|XP_002826744.1| PREDICTED: adenosine deaminase domain-containing protein 2-like
           isoform 1 [Pongo abelii]
          Length = 580

 Score = 40.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V  E+ G+    G   SK  A+Q AA   L
Sbjct: 142 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 173


>gi|223972688|ref|NP_631913.3| adenosine deaminase domain-containing protein 2 isoform 1 [Homo
           sapiens]
          Length = 665

 Score = 40.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V  E+ G+    G   SK  A+Q AA   L
Sbjct: 217 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 248


>gi|238492893|ref|XP_002377683.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220696177|gb|EED52519.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 247

 Score = 40.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           RF + ++  G+  A G   +K+ A  +AA  V +R  +
Sbjct: 207 RFRITIQYCGVE-ASGEGRNKKTARHLAARRVCERLNL 243


>gi|160380524|sp|Q95JV3|ADAD2_MACFA RecName: Full=Adenosine deaminase domain-containing protein 2
          Length = 580

 Score = 40.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V  E+ G+    G   SK  A+Q AA   L
Sbjct: 142 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 173


>gi|119615897|gb|EAW95491.1| testis nuclear RNA-binding protein-like, isoform CRA_a [Homo
           sapiens]
 gi|189054790|dbj|BAG37613.1| unnamed protein product [Homo sapiens]
          Length = 583

 Score = 40.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V  E+ G+    G   SK  A+Q AA   L
Sbjct: 145 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 176


>gi|109129347|ref|XP_001112377.1| PREDICTED: adenosine deaminase domain-containing protein 2-like
           isoform 1 [Macaca mulatta]
          Length = 562

 Score = 40.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V  E+ G+    G   SK  A+Q AA   L
Sbjct: 124 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 155


>gi|109129345|ref|XP_001112441.1| PREDICTED: adenosine deaminase domain-containing protein 2-like
           isoform 2 [Macaca mulatta]
 gi|15207991|dbj|BAB63020.1| hypothetical protein [Macaca fascicularis]
          Length = 580

 Score = 40.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V  E+ G+    G   SK  A+Q AA   L
Sbjct: 142 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 173


>gi|223972690|ref|NP_001138872.1| adenosine deaminase domain-containing protein 2 isoform 2 [Homo
           sapiens]
 gi|74730183|sp|Q8NCV1|ADAD2_HUMAN RecName: Full=Adenosine deaminase domain-containing protein 2;
           AltName: Full=Testis nuclear RNA-binding protein-like
 gi|20513942|gb|AAM22869.1|AF447586_1 unknown [Homo sapiens]
 gi|23273980|gb|AAH33491.1| ADAD2 protein [Homo sapiens]
 gi|325463397|gb|ADZ15469.1| adenosine deaminase domain containing 2 [synthetic construct]
          Length = 583

 Score = 40.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V  E+ G+    G   SK  A+Q AA   L
Sbjct: 145 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 176


>gi|83774778|dbj|BAE64901.1| unnamed protein product [Aspergillus oryzae]
          Length = 250

 Score = 40.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           RF + ++  G+  A G   +K+ A  +AA  V +R  +
Sbjct: 207 RFRITIQYCGVE-ASGEGRNKKTARHLAARRVCERLNL 243


>gi|34526549|dbj|BAC85152.1| FLJ00337 protein [Homo sapiens]
          Length = 288

 Score = 40.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V  E+ G+    G   SK  A+Q AA   L
Sbjct: 82  FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 113


>gi|21751785|dbj|BAC04032.1| unnamed protein product [Homo sapiens]
 gi|119615898|gb|EAW95492.1| testis nuclear RNA-binding protein-like, isoform CRA_b [Homo
           sapiens]
          Length = 665

 Score = 40.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V  E+ G+    G   SK  A+Q AA   L
Sbjct: 217 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 248


>gi|161579133|gb|ABX72054.1| R2D2 protein [Tribolium castaneum]
          Length = 141

 Score = 40.3 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 203 GMDCSKRAAEQVAAAEVLKRE 223
               +K+ A+Q+AA E+L++ 
Sbjct: 1   ATANTKKQAKQLAAREMLEKI 21


>gi|50550997|ref|XP_502972.1| YALI0D18150p [Yarrowia lipolytica]
 gi|49648840|emb|CAG81164.1| YALI0D18150p [Yarrowia lipolytica]
          Length = 397

 Score = 40.3 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 1/69 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                 E+      +    PE ++   +G     P F V V        +G   S   A+
Sbjct: 299 FNQPHKEIVRVCAREGLERPEARLMAETGRLSKAPVFVVGVFSGKHKLGEGQGASLAEAK 358

Query: 213 QVAAAEVLK 221
             A+   LK
Sbjct: 359 IRASVNALK 367


>gi|293335075|ref|NP_001167848.1| hypothetical protein LOC100381550 [Zea mays]
 gi|223944409|gb|ACN26288.1| unknown [Zea mays]
          Length = 264

 Score = 40.3 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAA 211
              D   EL+E            + T  +G  H     V V I+G   +    + + + A
Sbjct: 1   MHIDPMRELRETCQYNGFDLGLPEPTKYNGEFHVK---VEVNINGKMISCTAANRNSKDA 57

Query: 212 EQVAAAEVLKREG 224
            +VAA E L +  
Sbjct: 58  RKVAAQETLSKLK 70



 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 18/91 (19%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                 R+ A++ L E   A +   PE+++    GP H  +FT  V I       G   S
Sbjct: 169 YHGDMVRKTARSFLYELCAANYWKPPEFELCNDEGPSHLRKFTCKVLIE----ITGTSVS 224

Query: 208 -----------KRAAEQVAAAEV---LKREG 224
                      KRAA++ AA      LK  G
Sbjct: 225 LLECYSDPKLQKRAAQEHAAEGALWYLKHLG 255


>gi|169598446|ref|XP_001792646.1| hypothetical protein SNOG_02027 [Phaeosphaeria nodorum SN15]
 gi|111069119|gb|EAT90239.1| hypothetical protein SNOG_02027 [Phaeosphaeria nodorum SN15]
          Length = 145

 Score = 40.3 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 8/111 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLL 59
           + +++  + Y F + +LL++A   S    S ++        +RL  +GD +L L +    
Sbjct: 4   FKSIQDCVDYHFHDSTLLKEAFLASGAPISNKDIEGPVKGNKRLALVGDAVLRLAVLDEW 63

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           F         E   R   + + E  ++VA   +L  ++  +   + +    
Sbjct: 64  F--ESGTSTAEGHGRVVEVGTNERLAKVAENWNLKKYMIENPCQQGEAPRE 112


>gi|241954798|ref|XP_002420120.1| RNase III, putative; ribonuclease III, putative [Candida
           dubliniensis CD36]
 gi|223643461|emb|CAX42340.1| RNase III, putative [Candida dubliniensis CD36]
          Length = 666

 Score = 40.3 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  + V+V + G+    G D +K+ A Q AA   L
Sbjct: 621 EKVYHVLVSVKGIYLGGGFDLNKKLAAQKAAMCAL 655


>gi|221122562|ref|XP_002164293.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 9
           [Hydra magnipapillata]
          Length = 1280

 Score = 40.3 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219
            + +     G   +    F + PD   RF    +I G+   A G   SK+  E  AA ++
Sbjct: 5   AKGFLFHWVGKQMKLIPHFYAVPDGPHRFNYQAKIDGINYIAFGGGPSKKEGEAAAARDL 64

Query: 220 LKRE 223
           L   
Sbjct: 65  LNYL 68


>gi|242025160|ref|XP_002432994.1| ATP-dependent RNA helicase A, putative [Pediculus humanus corporis]
 gi|212518503|gb|EEB20256.1| ATP-dependent RNA helicase A, putative [Pediculus humanus corporis]
          Length = 1249

 Score = 40.3 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                         +G  +  RF   +++ G +    G   +K+ A+  AA +
Sbjct: 11  CIKSGRTPTFDVRAAGLKNRQRFICELKVDGYSYIGCGNSTNKKDAQFNAARD 63


>gi|313224856|emb|CBY20648.1| unnamed protein product [Oikopleura dioica]
          Length = 808

 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           D+   F + +  +     +G   +K+ A+  A A  L+
Sbjct: 239 DNTGLFVIQLGFTDGVMFEGYGRNKKLAKHHACAVALE 276


>gi|147832855|emb|CAN72816.1| hypothetical protein VITISV_004100 [Vitis vinifera]
          Length = 894

 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            V   G    +G   ++R A+  AA   L
Sbjct: 683 EVWNQGEKIGEGTGKTRREAQCQAAEASL 711



 Score = 39.5 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             VEI G    +G   +   A+  AA + L
Sbjct: 812 AQVEIDGQVLGKGTGSTWDDAKMQAAEKAL 841


>gi|327290459|ref|XP_003229940.1| PREDICTED: NF-kappa-B-repressing factor-like [Anolis carolinensis]
          Length = 719

 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     AQG   +K+ ++  AA E LK  
Sbjct: 396 NRLWRCGVYLEDHFLAQGFG-TKKTSKHAAADEALKIL 432


>gi|313222343|emb|CBY39288.1| unnamed protein product [Oikopleura dioica]
          Length = 826

 Score = 40.3 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           D+   F + +  +     +G   +K+ A+  A A  L+
Sbjct: 255 DNTGLFVIQLGFTDGVMFEGYGRNKKLAKHHACAVALE 292


>gi|195166832|ref|XP_002024238.1| GL14922 [Drosophila persimilis]
 gi|198468810|ref|XP_002134128.1| GA26573 [Drosophila pseudoobscura pseudoobscura]
 gi|194107611|gb|EDW29654.1| GL14922 [Drosophila persimilis]
 gi|198146581|gb|EDY72755.1| GA26573 [Drosophila pseudoobscura pseudoobscura]
          Length = 463

 Score = 40.3 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 44/192 (22%), Gaps = 7/192 (3%)

Query: 34  HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
               E Y RL    D         +     +  +      RF    + +   ++    D 
Sbjct: 263 DELIERYLRLCVDYDNAPHNAKYCVQNMLKELQETP-RGKRFLQCQTLQQICEIWHLGDY 321

Query: 94  ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
               +       +             +            +     + +            
Sbjct: 322 CRRKQKELRTLGNSGRAEVEPPEAQAKRQKLEEAATAITDEYEGVICRSMPFLRSTYASD 381

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAE 212
               KT L  +A       P Y+         D  F  +        +    + +K+ AE
Sbjct: 382 NHLPKTVLYVYAGKMGKSPPAYETQQC-----DKLFRAICSYDDQRYSSTFWEKNKKQAE 436

Query: 213 QVAAAEVLKREG 224
           Q AA   L   G
Sbjct: 437 QGAALVALLHIG 448


>gi|227206366|dbj|BAH57238.1| AT1G09700 [Arabidopsis thaliana]
          Length = 403

 Score = 40.3 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 26/76 (34%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q   +        K  LQE+A       P Y+           +FT  VEI G+      
Sbjct: 74  QCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAA 133

Query: 205 DCSKRAAEQVAAAEVL 220
             +K+ AE  A    L
Sbjct: 134 TRTKKDAEISAGRTAL 149


>gi|330797669|ref|XP_003286881.1| hypothetical protein DICPUDRAFT_150900 [Dictyostelium purpureum]
 gi|325083116|gb|EGC36577.1| hypothetical protein DICPUDRAFT_150900 [Dictyostelium purpureum]
          Length = 790

 Score = 40.3 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + +    G DH+P F   + I+       +  +K+ A+
Sbjct: 733 WDIPQIGGSDHNPEFKCSLYINDKYIHSTIAETKKKAK 770


>gi|332244469|ref|XP_003271396.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform
           3 [Nomascus leucogenys]
          Length = 565

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161

Query: 223 E 223
            
Sbjct: 162 L 162


>gi|332244467|ref|XP_003271395.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform
           2 [Nomascus leucogenys]
          Length = 558

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 84  HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 143

Query: 223 E 223
            
Sbjct: 144 L 144


>gi|332244465|ref|XP_003271394.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform
           1 [Nomascus leucogenys]
          Length = 576

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161

Query: 223 E 223
            
Sbjct: 162 L 162


>gi|307776249|pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1
          Length = 77

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 24/71 (33%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                   K  LQE+A       P Y+           +FT  VEI G+        +K+
Sbjct: 2   HMHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKK 61

Query: 210 AAEQVAAAEVL 220
            AE  A    L
Sbjct: 62  DAEISAGRTAL 72


>gi|297293318|ref|XP_001103214.2| PREDICTED: adenosine deaminase domain-containing protein 1 isoform
           4 [Macaca mulatta]
          Length = 613

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 139 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 198

Query: 223 E 223
            
Sbjct: 199 L 199


>gi|296195646|ref|XP_002745514.1| PREDICTED: adenosine deaminase domain-containing protein 1-like
           [Callithrix jacchus]
          Length = 509

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 101 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 160

Query: 223 E 223
            
Sbjct: 161 L 161


>gi|291401839|ref|XP_002717282.1| PREDICTED: adenosine deaminase domain containing 1
           (testis-specific) [Oryctolagus cuniculus]
          Length = 565

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161

Query: 223 E 223
            
Sbjct: 162 L 162


>gi|148703150|gb|EDL35097.1| testis nuclear RNA binding protein [Mus musculus]
          Length = 556

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 144 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 203

Query: 223 E 223
            
Sbjct: 204 L 204


>gi|126330710|ref|XP_001370522.1| PREDICTED: similar to testis nuclear RNA binding protein
           [Monodelphis domestica]
          Length = 660

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 185 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 244

Query: 223 E 223
            
Sbjct: 245 L 245


>gi|123263539|emb|CAM28065.1| adenosine deaminase domain containing 1 (testis specific) [Mus
           musculus]
          Length = 218

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 144 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 203

Query: 223 E 223
            
Sbjct: 204 L 204


>gi|123263540|emb|CAM28066.1| adenosine deaminase domain containing 1 (testis specific) [Mus
           musculus]
          Length = 178

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 104 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 163

Query: 223 E 223
            
Sbjct: 164 L 164


>gi|226530771|ref|NP_001152767.1| adenosine deaminase domain-containing protein 1 isoform 3 [Homo
           sapiens]
 gi|119625634|gb|EAX05229.1| testis nuclear RNA-binding protein, isoform CRA_b [Homo sapiens]
          Length = 558

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 84  HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 143

Query: 223 E 223
            
Sbjct: 144 L 144


>gi|115528969|gb|AAI07347.1| Adad1 protein [Mus musculus]
          Length = 222

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 144 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 203

Query: 223 E 223
            
Sbjct: 204 L 204


>gi|114595929|ref|XP_001155017.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform
           2 [Pan troglodytes]
          Length = 558

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 84  HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 143

Query: 223 E 223
            
Sbjct: 144 L 144


>gi|114595923|ref|XP_001155068.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform
           3 [Pan troglodytes]
          Length = 576

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161

Query: 223 E 223
            
Sbjct: 162 L 162


>gi|114595925|ref|XP_001154908.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform
           1 [Pan troglodytes]
 gi|114595927|ref|XP_517424.2| PREDICTED: testis nuclear RNA-binding protein isoform 4 [Pan
           troglodytes]
          Length = 565

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161

Query: 223 E 223
            
Sbjct: 162 L 162


>gi|109075564|ref|XP_001103054.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform
           2 [Macaca mulatta]
          Length = 565

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161

Query: 223 E 223
            
Sbjct: 162 L 162


>gi|109075566|ref|XP_001102972.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform
           1 [Macaca mulatta]
          Length = 558

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 84  HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 143

Query: 223 E 223
            
Sbjct: 144 L 144


>gi|16041086|dbj|BAB69710.1| hypothetical protein [Macaca fascicularis]
          Length = 345

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 15  HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 74

Query: 223 E 223
            
Sbjct: 75  L 75


>gi|21752129|dbj|BAC04125.1| unnamed protein product [Homo sapiens]
          Length = 558

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 84  HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 143

Query: 223 E 223
            
Sbjct: 144 L 144


>gi|153945870|ref|NP_033376.2| adenosine deaminase domain-containing protein 1 [Mus musculus]
 gi|81871891|sp|Q5SUE7|ADAD1_MOUSE RecName: Full=Adenosine deaminase domain-containing protein 1;
           AltName: Full=Testis nuclear RNA-binding protein
 gi|56238160|emb|CAI26206.1| adenosine deaminase domain containing 1 (testis specific) [Mus
           musculus]
 gi|123272971|emb|CAM18412.1| adenosine deaminase domain containing 1 (testis specific) [Mus
           musculus]
 gi|183396967|gb|AAI65984.1| Adenosine deaminase domain containing 1 (testis specific)
           [synthetic construct]
          Length = 619

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 144 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 203

Query: 223 E 223
            
Sbjct: 204 L 204


>gi|673456|emb|CAA59168.1| testis nuclear RNA binding protein [Mus musculus]
          Length = 619

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 144 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 203

Query: 223 E 223
            
Sbjct: 204 L 204


>gi|226529650|ref|NP_001152757.1| adenosine deaminase domain-containing protein 1 isoform 2 [Homo
           sapiens]
 gi|25955608|gb|AAH40229.1| ADAD1 protein [Homo sapiens]
 gi|119625639|gb|EAX05234.1| testis nuclear RNA-binding protein, isoform CRA_d [Homo sapiens]
 gi|123993053|gb|ABM84128.1| testis nuclear RNA-binding protein [synthetic construct]
 gi|123993055|gb|ABM84129.1| testis nuclear RNA-binding protein [synthetic construct]
 gi|124000041|gb|ABM87529.1| testis nuclear RNA-binding protein [synthetic construct]
 gi|124000043|gb|ABM87530.1| testis nuclear RNA-binding protein [synthetic construct]
          Length = 565

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161

Query: 223 E 223
            
Sbjct: 162 L 162


>gi|297484624|ref|XP_002694442.1| PREDICTED: adenosine deaminase domain containing 1
           (testis-specific) isoform 2 [Bos taurus]
 gi|296478716|gb|DAA20831.1| adenosine deaminase domain containing 1 (testis-specific) isoform 2
           [Bos taurus]
          Length = 566

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161

Query: 223 E 223
            
Sbjct: 162 L 162


>gi|297484622|ref|XP_002694441.1| PREDICTED: adenosine deaminase domain containing 1
           (testis-specific) isoform 1 [Bos taurus]
 gi|296478715|gb|DAA20830.1| adenosine deaminase domain containing 1 (testis-specific) isoform 1
           [Bos taurus]
          Length = 577

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161

Query: 223 E 223
            
Sbjct: 162 L 162


>gi|74354638|gb|AAI02559.1| Adenosine deaminase domain containing 1 (testis-specific) [Bos
           taurus]
          Length = 208

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161

Query: 223 E 223
            
Sbjct: 162 L 162


>gi|62244087|ref|NP_001006978.2| adenosine deaminase domain-containing protein 1 [Rattus norvegicus]
 gi|123780593|sp|Q3KR54|ADAD1_RAT RecName: Full=Adenosine deaminase domain-containing protein 1;
           AltName: Full=Testis nuclear RNA-binding protein
 gi|76780258|gb|AAI05907.1| Adenosine deaminase domain containing 1 (testis specific) [Rattus
           norvegicus]
          Length = 619

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 144 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 203

Query: 223 E 223
            
Sbjct: 204 L 204


>gi|21245124|ref|NP_640336.1| adenosine deaminase domain-containing protein 1 isoform 1 [Homo
           sapiens]
 gi|74732329|sp|Q96M93|ADAD1_HUMAN RecName: Full=Adenosine deaminase domain-containing protein 1;
           AltName: Full=Testis nuclear RNA-binding protein
 gi|16552939|dbj|BAB71416.1| unnamed protein product [Homo sapiens]
 gi|119625633|gb|EAX05228.1| testis nuclear RNA-binding protein, isoform CRA_a [Homo sapiens]
 gi|119625635|gb|EAX05230.1| testis nuclear RNA-binding protein, isoform CRA_a [Homo sapiens]
 gi|119625636|gb|EAX05231.1| testis nuclear RNA-binding protein, isoform CRA_a [Homo sapiens]
 gi|119625637|gb|EAX05232.1| testis nuclear RNA-binding protein, isoform CRA_a [Homo sapiens]
          Length = 576

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDE 161

Query: 223 E 223
            
Sbjct: 162 L 162


>gi|118398179|ref|XP_001031419.1| Double-stranded RNA binding motif family protein [Tetrahymena
           thermophila]
 gi|89285747|gb|EAR83756.1| Double-stranded RNA binding motif family protein [Tetrahymena
           thermophila SB210]
          Length = 967

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 28/95 (29%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           +   EV  T       +   +  K  +D+   +    + +        V           
Sbjct: 305 NMSNEVLITRKIVKILEEFKEVQKRDQDSIFHIALKQYCEKFHKNYDCVFTEEKDSKLKG 364

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V + G+     +  SK+ A+  A    + R 
Sbjct: 365 FICEVIVDGIRLGPQLAKSKKDAKTQACMCAMARI 399


>gi|114599995|ref|XP_001146638.1| PREDICTED: similar to endoribonuclease Dicer [Pan troglodytes]
          Length = 84

 Score = 39.9 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            V +E++G    +G+  S R A+  AA   L+   
Sbjct: 41  RVTMEVAGQEKFKGVGRSNRIAKSAAARRALRSLK 75


>gi|224061609|ref|XP_002300565.1| hypothetical protein POPTRDRAFT_177484 [Populus trichocarpa]
 gi|222847823|gb|EEE85370.1| hypothetical protein POPTRDRAFT_177484 [Populus trichocarpa]
          Length = 926

 Score = 39.9 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +A+   KF   A  +++E                + GP     F   +E+        +
Sbjct: 2   PKAIIHQKFGNKACYKVEEVKEESAQNGCPGLAIPQKGPF---LFRCRLELPEFTVVSDI 58

Query: 205 DCSKRAAEQVAAAEVLKR 222
              K+ AEQ AA   LK+
Sbjct: 59  CRKKKDAEQSAADLALKK 76


>gi|58264878|ref|XP_569595.1| hypothetical protein CNC03680 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57225827|gb|AAW42288.1| hypothetical protein CNC03680 [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 839

 Score = 39.9 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF- 60
             +        +     +  L  +A+T +   +  + +YERLE LGD +L  + +   + 
Sbjct: 487 EEMSAKEFNSIL-----DPELALQAITAAEGLNVPRWTYERLEILGDTLLKFMTTLHFYL 541

Query: 61  ---NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                       ++    + L+S  T +  A +  L  ++R 
Sbjct: 542 LGGGADSEDDMNKVWQDRHMLISNRTLTANAVKQGLVKYVRN 583


>gi|134109495|ref|XP_776862.1| hypothetical protein CNBC3530 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259542|gb|EAL22215.1| hypothetical protein CNBC3530 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 839

 Score = 39.9 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF- 60
             +        +     +  L  +A+T +   +  + +YERLE LGD +L  + +   + 
Sbjct: 487 EEMSAKEFNSIL-----DPELALQAITAAEGLNVPRWTYERLEILGDTLLKFMTTLHFYL 541

Query: 61  ---NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                       ++    + L+S  T +  A +  L  ++R 
Sbjct: 542 LGGGADSEDDMNKVWQDRHMLISNRTLTANAVKQGLVKYVRN 583


>gi|224613148|dbj|BAH24251.1| dsRNA-specific ribonuclease RNaseIII [Tsuwabuki witches'-broom
           phytoplasma]
          Length = 159

 Score = 39.9 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 44/137 (32%), Gaps = 3/137 (2%)

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           ++ +    V  ++    A E+ L  +I +    +K       SI AD  E+L  A+YLD 
Sbjct: 1   MTKKRAQAVCVDSLLIYAEEIQLKKYIYLGKGEKKRSVHN-YSIVADAFEALFGAIYLDL 59

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           G E A             K             +           YK+    G  H+  F 
Sbjct: 60  GFEQAQKTFYHVVLPCLNKIINIIDFKTQ--LQELVQTRKQNITYKIISEKGLAHEKEFV 117

Query: 191 VVVEISGLAPAQGMDCS 207
             V +      +G   +
Sbjct: 118 SEVYLGKEWLGKGNGKT 134


>gi|145506903|ref|XP_001439412.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74830350|emb|CAI39053.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia]
 gi|124406596|emb|CAK72015.1| unnamed protein product [Paramecium tetraurelia]
          Length = 632

 Score = 39.9 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 7/97 (7%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            ++E  + Y      ++E+A+  SS   +++ +YE LE LGD +L  +++  +F  ++  
Sbjct: 333 DSVESILNYQ-----VVEEAIVTSS--SNFKRNYENLELLGDSVLKYVVTVDIFRQYELL 385

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
            EGE++   + L+     +Q+  +L L  +I      
Sbjct: 386 DEGEMTSLRSRLIMNTFLAQLFEQLGLQHYIINQDLH 422



 Score = 37.2 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 8/47 (17%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            Y F N  L E A+            Y+RLEFLGD  + LL+ + +F
Sbjct: 503 DYKFNNPQLFEIAI--------NPLQYDRLEFLGDAAIELLVISYIF 541


>gi|145517933|ref|XP_001444844.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74830355|emb|CAI39054.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia]
 gi|124412277|emb|CAK77447.1| unnamed protein product [Paramecium tetraurelia]
          Length = 632

 Score = 39.9 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            ++E  + Y        E+A+  SS +  ++ +YE LE LGD +L  +I+  +F  +   
Sbjct: 333 DSVESILNYQVP-----EEAIVTSSFN--FKRNYENLEVLGDSVLKYVITADIFKQYKLL 385

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
            EGE++   + L+     +Q+  +L L  FI       K + +
Sbjct: 386 DEGEMTSLRSRLIMNTFLAQLFEQLGLEQFIINQDLHFKQIKN 428



 Score = 38.8 bits (88), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 8/47 (17%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            Y F N  L E A+          + Y+RLEFLGD  + LL+ +  F
Sbjct: 503 DYKFNNPQLYEIAI--------NPQYYDRLEFLGDAAIELLVISYAF 541


>gi|212722406|ref|NP_001131481.1| hypothetical protein LOC100192817 [Zea mays]
 gi|194691644|gb|ACF79906.1| unknown [Zea mays]
 gi|195623306|gb|ACG33483.1| double-stranded RNA binding motif family protein [Zea mays]
          Length = 184

 Score = 39.9 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 7/52 (13%)

Query: 176 KVTFRSGPDHDPRFTVVVEI--SGLAPAQGMDCS-----KRAAEQVAAAEVL 220
                 GP H+  FT  V +   GL        S     K+AA + AA   L
Sbjct: 108 FDFEEQGPPHNRIFTCKVTVHLDGLVNTIMECFSDPKPKKKAARENAAQGAL 159


>gi|296863416|pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
           Implications Processing
          Length = 76

 Score = 39.9 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 24/67 (35%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
               K  LQE+A       P Y+           +FT  VEI G+        +K+ AE 
Sbjct: 3   HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEI 62

Query: 214 VAAAEVL 220
            A    L
Sbjct: 63  SAGRTAL 69


>gi|183985546|gb|AAI66047.1| LOC100158445 protein [Xenopus laevis]
          Length = 796

 Score = 39.9 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
            +   V + G   A+G   +K+ ++  AA E    LK  
Sbjct: 488 VWKCGVFVQGHCVAEGYG-NKKTSKHAAAKEAVRILKNL 525


>gi|299750448|ref|XP_001836762.2| hypothetical protein CC1G_04075 [Coprinopsis cinerea okayama7#130]
 gi|298408908|gb|EAU84979.2| hypothetical protein CC1G_04075 [Coprinopsis cinerea okayama7#130]
          Length = 118

 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 23/80 (28%), Gaps = 5/80 (6%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SG--LAPAQGMDC 206
                +K++     +                  +   F   V +    G      +G   
Sbjct: 29  TMTVLSKSDACMHYNNACEKLFGKTFPPTVHEINKSEFKAEVRVTFEDGVIKLLGEGAGT 88

Query: 207 SKRAAEQVAAAEVLKREGIW 226
           SK+ A+ +A +E   +  + 
Sbjct: 89  SKQIAKNLACSEAYNQLRVI 108


>gi|301774350|ref|XP_002922598.1| PREDICTED: NF-kappa-B-repressing factor-like [Ailuropoda
           melanoleuca]
          Length = 824

 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 507 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 543


>gi|269114857|ref|YP_003302620.1| hypothetical protein MHO_0830 [Mycoplasma hominis]
 gi|268322482|emb|CAX37217.1| Hypothetical protein, putative Ribonuclease III [Mycoplasma hominis
           ATCC 23114]
          Length = 219

 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 70/184 (38%), Gaps = 23/184 (12%)

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +    +  E + +   N +VS +T ++   +L  A ++ +  + +++  +   S++AD+ 
Sbjct: 24  YCLIANKNESDFTDLKNQIVSNKTLAKKINKLGFAKYLVLGDNDKRNNVANQDSVKADLF 83

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+ +D G ++                 K    R+ + +  +  +A   +    + 
Sbjct: 84  EAIIGAIAIDSGWDIKRLKNIIIKMLDIEHFFKDVDCREKRPDKFKLENAINTLKELAER 143

Query: 178 TFRSGP------------DHDPRFTVVVEIS---------GLAPAQGMDCSKRAAEQVAA 216
              S P            +    +     ++              +G   SK+ A+++AA
Sbjct: 144 GECSMPIYQISEKPIIDNNGKQWWHCRCNVNFRNLQWMGLWTKYTEGYGTSKKLAKKMAA 203

Query: 217 AEVL 220
             VL
Sbjct: 204 YIVL 207


>gi|119183947|ref|XP_001242948.1| hypothetical protein CIMG_06844 [Coccidioides immitis RS]
          Length = 238

 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 1/100 (1%)

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
              L+    +           +Q  +           +L +    +    P  ++   +G
Sbjct: 103 AIYLHCGRPVAKQFFKEHFMSRQLPVADLFSFAQPTRDLTKLCAREGFERPVARIISETG 162

Query: 183 P-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                P F V +        +G   S   A   AA   LK
Sbjct: 163 RLSRHPVFVVGIFSGQDLLGEGSGPSLTEARFRAAVAALK 202


>gi|327274104|ref|XP_003221818.1| PREDICTED: adenosine deaminase domain-containing protein 1-like
           [Anolis carolinensis]
          Length = 576

 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 14/35 (40%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F     + G+    G+  +K+ ++  AA   L   
Sbjct: 122 FAFCAVVDGITYKTGLGQNKKESKSNAAKLALDEL 156


>gi|281340897|gb|EFB16481.1| hypothetical protein PANDA_011578 [Ailuropoda melanoleuca]
          Length = 690

 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 409


>gi|198429691|ref|XP_002127325.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8
           [Ciona intestinalis]
          Length = 577

 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 8/68 (11%), Positives = 21/68 (30%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
                +          T  + +   +    DP F   + ++          +K++A+  A
Sbjct: 293 KPMICILHEYAQSVLRTKPHYIFATNEDASDP-FQATIVLNEKNYGTASGINKKSAKNKA 351

Query: 216 AAEVLKRE 223
           A   ++  
Sbjct: 352 ALLTMEML 359


>gi|109132065|ref|XP_001082426.1| PREDICTED: NF-kappa-B-repressing factor isoform 2 [Macaca mulatta]
          Length = 690

 Score = 39.9 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 409


>gi|297710881|ref|XP_002832086.1| PREDICTED: NF-kappa-B-repressing factor-like isoform 2 [Pongo
           abelii]
          Length = 705

 Score = 39.9 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 388 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 424


>gi|291084505|ref|NP_001166958.1| NF-kappa-B-repressing factor isoform 1 [Homo sapiens]
 gi|332861530|ref|XP_001135674.2| PREDICTED: NF-kappa-B-repressing factor isoform 1 [Pan troglodytes]
 gi|119610265|gb|EAW89859.1| NF-kappaB repressing factor, isoform CRA_a [Homo sapiens]
          Length = 705

 Score = 39.9 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 388 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 424


>gi|332226246|ref|XP_003262300.1| PREDICTED: NF-kappa-B-repressing factor isoform 1 [Nomascus
           leucogenys]
          Length = 705

 Score = 39.9 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 388 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 424


>gi|121511852|gb|ABM55377.1| NF-kappaB repressing factor [Homo sapiens]
          Length = 599

 Score = 39.9 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 282 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 318


>gi|156368791|ref|XP_001627875.1| predicted protein [Nematostella vectensis]
 gi|156214837|gb|EDO35812.1| predicted protein [Nematostella vectensis]
          Length = 803

 Score = 39.9 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 24/99 (24%), Gaps = 5/99 (5%)

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
                                      A ++ +     +    P        GPDH+  F
Sbjct: 2   NNTIYFCLTSQAEDIDLDAHLHGNWTLANSKSRLHQFLQQNRLPAEFKYGAVGPDHNRAF 61

Query: 190 TVV--VEISG---LAPAQGMDCSKRAAEQVAAAEVLKRE 223
                V +              +K+ A Q  A  ++++ 
Sbjct: 62  KCELSVFVKSHRRNIHGTANASTKKQAAQSCALSLVRQL 100


>gi|124431167|gb|ABN11234.1| NF-kappaB repressing factor [Homo sapiens]
          Length = 690

 Score = 39.9 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 409


>gi|291407867|ref|XP_002720262.1| PREDICTED: transcription factor NRF [Oryctolagus cuniculus]
          Length = 705

 Score = 39.9 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 388 NRTWRCQVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 424


>gi|71019739|ref|XP_760100.1| hypothetical protein UM03953.1 [Ustilago maydis 521]
 gi|46099865|gb|EAK85098.1| hypothetical protein UM03953.1 [Ustilago maydis 521]
          Length = 281

 Score = 39.5 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLG 47
           +N  L  +A+TH S  ++ +    R  FLG
Sbjct: 112 SNPDLALRAVTHESYLNAREGHNRRFAFLG 141


>gi|332226248|ref|XP_003262301.1| PREDICTED: NF-kappa-B-repressing factor isoform 2 [Nomascus
           leucogenys]
          Length = 690

 Score = 39.5 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 409


>gi|63003897|ref|NP_060014.2| NF-kappa-B-repressing factor isoform 2 [Homo sapiens]
 gi|291084508|ref|NP_001166959.1| NF-kappa-B-repressing factor isoform 2 [Homo sapiens]
 gi|114689983|ref|XP_001135754.1| PREDICTED: transcription factor NRF isoform 2 [Pan troglodytes]
 gi|33860178|sp|O15226|NKRF_HUMAN RecName: Full=NF-kappa-B-repressing factor; Short=NFkB-repressing
           factor; AltName: Full=Protein ITBA4; AltName:
           Full=Transcription factor NRF
 gi|37784392|gb|AAP43025.1| transcription factor NRF [Homo sapiens]
 gi|49119071|gb|AAH47878.1| NFKB repressing factor [Homo sapiens]
 gi|66840154|gb|AAH40379.1| NFKB repressing factor [Homo sapiens]
 gi|119610266|gb|EAW89860.1| NF-kappaB repressing factor, isoform CRA_b [Homo sapiens]
 gi|124431169|gb|ABN11235.1| NF-kappaB repressing factor [Homo sapiens]
 gi|208965280|dbj|BAG72654.1| NF-kappaB repressing factor [synthetic construct]
          Length = 690

 Score = 39.5 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 409


>gi|297710879|ref|XP_002832085.1| PREDICTED: NF-kappa-B-repressing factor-like isoform 1 [Pongo
           abelii]
          Length = 690

 Score = 39.5 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 409


>gi|328714433|ref|XP_003245358.1| PREDICTED: hypothetical protein LOC100570158 [Acyrthosiphon pisum]
          Length = 540

 Score = 39.5 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/225 (9%), Positives = 58/225 (25%), Gaps = 16/225 (7%)

Query: 2   SALRYSTLEKRIGYAFAN-RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +++    ++     ++ N   +L++         +      + E+  D  +         
Sbjct: 185 NSMNSLKIKSNHNVSYNNHIGMLQE------YCQARGLDLPKYEYHQDNDIKNKRYMYSV 238

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  +         +        +  ++D  +                         
Sbjct: 239 ICSIGKCKCTGVGISKQIAKNHAARLMYIQIDSNNATINEHSTSNTRKKKPI-------- 290

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
                       +     +            K   +    LQE   A+    P+Y+    
Sbjct: 291 -DFGLGLSKNEAKNNTVNIALDQIYHGKNKTKMSANYIGTLQEKCAARGWELPKYEYHQE 349

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           +  +    F  V+  +G   + G+  SK+ A+  AA  V  +  +
Sbjct: 350 NDNEIHKLFYSVICSAGPYKSTGVGNSKQLAKNQAAQIVCDQINL 394


>gi|290760511|gb|ADD59808.1| dsRNA-specific ribonuclease RNase III [Periwinkle leaf yellowing
           phytoplasma]
          Length = 112

 Score = 39.5 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 13/37 (35%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            T +YK+    GP H   F   V +       G   +
Sbjct: 42  KTIQYKIVQEQGPAHSKNFVAEVYLEKNLLGTGEGST 78


>gi|170029002|ref|XP_001842383.1| ribonuclease iii [Culex quinquefasciatus]
 gi|167879433|gb|EDS42816.1| ribonuclease iii [Culex quinquefasciatus]
          Length = 192

 Score = 39.5 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 15/44 (34%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              + P     + +     G   A     S + AE  AA + L+
Sbjct: 90  IECNSPTSTRVYMMADYFRGKRLACSNGHSTQQAEMNAAKQALE 133


>gi|321254347|ref|XP_003193044.1| hypothetical protein CGB_C7350C [Cryptococcus gattii WM276]
 gi|317459513|gb|ADV21257.1| hypothetical protein CNC05030 [Cryptococcus gattii WM276]
          Length = 409

 Score = 39.5 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 186 DPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            P F + + +  G+  A+G   SK  A+  AA   L+  
Sbjct: 302 APLFLIGLFLPSGIKLAEGHGSSKAMAQHRAAVNALQSI 340


>gi|46250431|gb|AAH68514.1| NFKB repressing factor [Homo sapiens]
          Length = 690

 Score = 39.5 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 409


>gi|58265282|ref|XP_569797.1| hypothetical protein CNC05030 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134109217|ref|XP_776723.1| hypothetical protein CNBC2140 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259403|gb|EAL22076.1| hypothetical protein CNBC2140 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226029|gb|AAW42490.1| hypothetical protein CNC05030 [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 422

 Score = 39.5 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 186 DPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            P F + + +  G+  A+G   SK  A+  AA   L+  
Sbjct: 315 APLFLIGLFLPSGIKLAEGHGSSKAMAQHRAAVNALQSI 353


>gi|149060014|gb|EDM10830.1| rCG53269, isoform CRA_b [Rattus norvegicus]
          Length = 634

 Score = 39.5 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 391 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 427


>gi|27820005|gb|AAL39540.2| LD10028p [Drosophila melanogaster]
          Length = 334

 Score = 39.5 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 75/234 (32%), Gaps = 19/234 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRI 50
                KR+G +F   S L++A T  S +   ++                   L   G +I
Sbjct: 80  LFAFGKRLGESFE-LSELQRAFTEKSFAEREEDRRRQLGIEESDLQMPHNSDLVEKGQQI 138

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
               +   L +         L    + L+S ET + V+  L     I+ +          
Sbjct: 139 ARAYVEAFLQHQLPKVPNEGLQAIASYLLSTETLAHVSTHLGTKDLIQSTEYP--PSAES 196

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
                  V+ +L ++  ++        F+     Q+ L      ++    L++    +  
Sbjct: 197 QAKSLHAVIGALASSSGIERAFIFVRDFICTQLNQKDLLEVWTPQEPIQLLEKICQERKL 256

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              E ++    G +     + V +  +     +G     + A + AA + L+  
Sbjct: 257 GEAEPRLLGDCGKNTVLAAYQVGIYANRQLLGKGFGEDVKTATETAALDALQSI 310


>gi|21357105|ref|NP_649541.1| mitochondrial ribosomal protein L44 [Drosophila melanogaster]
 gi|7296746|gb|AAF52025.1| mitochondrial ribosomal protein L44 [Drosophila melanogaster]
          Length = 321

 Score = 39.5 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 75/234 (32%), Gaps = 19/234 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRI 50
                KR+G +F   S L++A T  S +   ++                   L   G +I
Sbjct: 67  LFAFGKRLGESFE-LSELQRAFTEKSFAEREEDRRRQLGIEESDLQMPHNSDLVEKGQQI 125

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
               +   L +         L    + L+S ET + V+  L     I+ +          
Sbjct: 126 ARAYVEAFLQHQLPKVPNEGLQAIASYLLSTETLAHVSTHLGTKDLIQSTEYP--PSAES 183

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
                  V+ +L ++  ++        F+     Q+ L      ++    L++    +  
Sbjct: 184 QAKSLHAVIGALASSSGIERAFIFVRDFICTQLNQKDLLEVWTPQEPIQLLEKICQERKL 243

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              E ++    G +     + V +  +     +G     + A + AA + L+  
Sbjct: 244 GEAEPRLLGDCGKNTVLAAYQVGIYANRQLLGKGFGEDVKTATETAALDALQSI 297


>gi|158339712|ref|YP_001520718.1| hypothetical protein AM1_A0060 [Acaryochloris marina MBIC11017]
 gi|158309953|gb|ABW31569.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 157

 Score = 39.5 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F   V+  GL    G   SK+ A+  AA ++L
Sbjct: 112 FRCSVQAMGLR-GVGEGVSKKKAKMGAARKLL 142


>gi|149698252|ref|XP_001503088.1| PREDICTED: similar to adenosine deaminase domain containing 1
           (testis specific) isoform 2 [Equus caballus]
          Length = 566

 Score = 39.5 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGLNKKESRSNAAKLALDE 161

Query: 223 E 223
            
Sbjct: 162 L 162


>gi|149698250|ref|XP_001503078.1| PREDICTED: similar to adenosine deaminase domain containing 1
           (testis specific) isoform 1 [Equus caballus]
          Length = 577

 Score = 39.5 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   V  + K T  +G    P F     + G+    G+  +K+ +   AA   L  
Sbjct: 102 HQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGLNKKESRSNAAKLALDE 161

Query: 223 E 223
            
Sbjct: 162 L 162


>gi|281343287|gb|EFB18871.1| hypothetical protein PANDA_013094 [Ailuropoda melanoleuca]
          Length = 584

 Score = 39.5 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P F     + G+    G+  +K+ +   AA   L   
Sbjct: 133 PYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDEL 169


>gi|149060013|gb|EDM10829.1| rCG53269, isoform CRA_a [Rattus norvegicus]
          Length = 616

 Score = 39.5 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 409


>gi|149048753|gb|EDM01294.1| testis nuclear RNA-binding protein [Rattus norvegicus]
          Length = 454

 Score = 39.5 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P F     + G+    G+  +K+ +   AA   L   
Sbjct: 3   PYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDEL 39


>gi|119625638|gb|EAX05233.1| testis nuclear RNA-binding protein, isoform CRA_c [Homo sapiens]
          Length = 578

 Score = 39.5 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P F     + G+    G+  +K+ +   AA   L   
Sbjct: 128 PYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDEL 164


>gi|324504592|gb|ADY41982.1| tRNA-dihydrouridine synthase 2-like protein [Ascaris suum]
          Length = 454

 Score = 39.5 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLKREG 224
                  +D R+  ++E+ G      +   +KR AEQVAA   L   G
Sbjct: 396 YDCKFRPNDKRYEALIEVDGCKFLSRVGQPNKRMAEQVAALAALVGLG 443


>gi|291240590|ref|XP_002740205.1| PREDICTED: RIKEN cDNA 1810030O07-like [Saccoglossus kowalevskii]
          Length = 838

 Score = 39.5 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 1/64 (1%)

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVAAAEVL 220
             +      V       +  G       +  V +        +  SK + AEQ AA   L
Sbjct: 327 YTYILLSCIVCCFAYQIYILGILGRSLVSCEVTVGEQTYRSTIVTSKPKDAEQDAARVAL 386

Query: 221 KREG 224
              G
Sbjct: 387 VELG 390


>gi|326924609|ref|XP_003208518.1| PREDICTED: LOW QUALITY PROTEIN: NF-kappa-B-repressing factor-like
           [Meleagris gallopavo]
          Length = 713

 Score = 39.5 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 395 NRMWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 431


>gi|149759351|ref|XP_001491812.1| PREDICTED: similar to NF-kappaB repressing factor [Equus caballus]
          Length = 784

 Score = 39.5 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 467 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 503


>gi|308198210|ref|XP_001387150.2| predicted protein [Scheffersomyces stipitis CBS 6054]
 gi|149389085|gb|EAZ63127.2| predicted protein [Pichia stipitis CBS 6054]
          Length = 217

 Score = 39.5 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 5  RYSTLEKRI--GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55
              ++  +   Y+  +  L  + LTH S  +  +   E+L  +G +IL L  
Sbjct: 47 NLKHIKDFLTEKYSIDD-DLALQVLTHKSFGNGIKPYNEKLSAMGSKILNLYF 98


>gi|148226408|ref|NP_001087383.1| ATP-dependent RNA helicase A-like protein [Xenopus laevis]
 gi|71153340|sp|Q68FK8|DHX9_XENLA RecName: Full=ATP-dependent RNA helicase A-like protein; AltName:
           Full=DEAH box protein 9; AltName: Full=Nuclear DNA
           helicase II; Short=NDH II
 gi|51262114|gb|AAH79701.1| MGC81010 protein [Xenopus laevis]
          Length = 1262

 Score = 39.5 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 5/78 (6%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV----VE-ISGLAPAQGMD 205
                    + +     +   T       + GPDH+  F       V+ +     A+   
Sbjct: 176 HGNWTLENAKARLNQFFQKEKTQGEYKYSQVGPDHNRSFIAEMTLYVKQLGRKIIAREHG 235

Query: 206 CSKRAAEQVAAAEVLKRE 223
            +K+ A Q  A  ++++ 
Sbjct: 236 SNKKLAAQSCALSIVRQL 253



 Score = 39.1 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                         +G  +  +F   V I G      G   +K+ A+  +A +
Sbjct: 12  CGKKKLTPNYEIRAAGNKNRQKFMCEVRIDGFNYIGMGNSTNKKDAQTNSARD 64


>gi|311276875|ref|XP_001927218.2| PREDICTED: NF-kappa-B-repressing factor-like [Sus scrofa]
          Length = 767

 Score = 39.5 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 450 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 486


>gi|302689897|ref|XP_003034628.1| hypothetical protein SCHCODRAFT_107278 [Schizophyllum commune H4-8]
 gi|300108323|gb|EFI99725.1| hypothetical protein SCHCODRAFT_107278 [Schizophyllum commune H4-8]
          Length = 227

 Score = 39.5 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 15/46 (32%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +   TP        GP H P +T  +   G    +    SK+
Sbjct: 133 NYIQQLTGTPFRFEDKSHGPPHQPIWTSQLYFGGKLVGESQHSSKK 178


>gi|255638997|gb|ACU19799.1| unknown [Glycine max]
          Length = 168

 Score = 39.5 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 12/78 (15%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA------PAQGMDCSKRA- 210
           ++ L E   +     P ++     GPDH  +FT  V +             G   SK+  
Sbjct: 85  RSRLYELCASYCWKPPSFECCKAEGPDHLKQFTCKVTLEIEEAQNLILEFVGEPLSKKKD 144

Query: 211 -AEQVAAAEV---LKREG 224
            AE  AA      L+ EG
Sbjct: 145 AAE-SAAEGAFWYLQHEG 161


>gi|308499431|ref|XP_003111901.1| CRE-PASH-1 protein [Caenorhabditis remanei]
 gi|308268382|gb|EFP12335.1| CRE-PASH-1 protein [Caenorhabditis remanei]
          Length = 757

 Score = 39.5 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223
               G   +K+ A  VAA + L + 
Sbjct: 423 EIGSGNGSNKKTARLVAAKDALSKL 447


>gi|219124880|ref|XP_002182722.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406068|gb|EEC46009.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1021

 Score = 39.5 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                     +  ++G   +  F VV+E  G     G  C+K AA+Q+AA   L+  
Sbjct: 380 CSKRQRTPSFLLQKAGYSGNFAFKVVLE-DGEEYGVGDGCTKIAAKQLAAKRSLQAL 435


>gi|26335267|dbj|BAC31334.1| unnamed protein product [Mus musculus]
          Length = 547

 Score = 39.5 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 409


>gi|297742898|emb|CBI35689.3| unnamed protein product [Vitis vinifera]
          Length = 160

 Score = 39.5 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             VEI G    +G   +   A+  AA + L
Sbjct: 78  AQVEIDGQVLGKGTGSTWDDAKMQAAEKAL 107


>gi|296471316|gb|DAA13431.1| transcription factor NRF [Bos taurus]
          Length = 690

 Score = 39.5 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 409


>gi|145489315|ref|XP_001430660.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74830695|emb|CAI39097.1| Dicer-like ribonuclease with mutated helicase and Rnase III domains
            [Paramecium tetraurelia]
 gi|124397759|emb|CAK63262.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1596

 Score = 39.5 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 3/79 (3%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +S+LE +I Y F +  LL +A+T  S          +L+F                    
Sbjct: 1295 FSSLEYKIKYQFKHFELLFQAMTDISFKFVINN---KLKFKYYEQFQKKEEFQGMIQEQQ 1351

Query: 66   AKEGELSVRFNSLVSAETC 84
              E +      +       
Sbjct: 1352 WIEFKSQFECMNETDQNNY 1370


>gi|148697036|gb|EDL28983.1| NF-kappaB repressing factor, isoform CRA_a [Mus musculus]
          Length = 708

 Score = 39.5 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 391 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 427


>gi|115298524|ref|YP_762377.1| 47.7 kDa RNAse III [Spodoptera frugiperda ascovirus 1a]
 gi|114416791|emb|CAL44622.1| 47.7 kDa RNAse III [Spodoptera frugiperda ascovirus 1a]
          Length = 417

 Score = 39.5 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 7/88 (7%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS-----TLLFNHFDSAKEGELSV 73
           N    + ALT  S  +    +YE  E++GD ++   I           H      G ++ 
Sbjct: 172 NMDKFQAALT--SKEYDNIFNYEYFEYIGDSVINRFIIDYIRENYTDIHNIQQDIGVMTK 229

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSS 101
             +  V     S+    + L  FIR   
Sbjct: 230 LRSIYVGKWNLSKCCVSIGLNKFIRCQY 257


>gi|291230324|ref|XP_002735119.1| PREDICTED: CG31301-like [Saccoglossus kowalevskii]
          Length = 530

 Score = 39.5 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            P+      I+       +  SK+ A+ ++A + L R 
Sbjct: 279 KPKHVCKTVINDQVVGVAIHESKKDAKSLSAEKALSRL 316


>gi|224613100|dbj|BAH24210.1| dsRNA-specific ribonuclease RNaseIII [Onion yellows phytoplasma]
          Length = 157

 Score = 39.5 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 13/37 (35%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            T +YK+    GP H   F   V +       G   +
Sbjct: 87  KTIQYKIVQEQGPAHSKNFVAEVYLEKNLLGTGEGST 123


>gi|296236275|ref|XP_002763246.1| PREDICTED: NF-kappa-B-repressing factor-like [Callithrix jacchus]
          Length = 952

 Score = 39.5 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 635 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 671


>gi|156523218|ref|NP_001096023.1| transcription factor NRF [Bos taurus]
 gi|133777427|gb|AAI14698.1| NKRF protein [Bos taurus]
          Length = 690

 Score = 39.5 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKIL 409


>gi|115491843|ref|XP_001210549.1| hypothetical protein ATEG_00463 [Aspergillus terreus NIH2624]
 gi|114197409|gb|EAU39109.1| hypothetical protein ATEG_00463 [Aspergillus terreus NIH2624]
          Length = 396

 Score = 39.5 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 47/158 (29%), Gaps = 8/158 (5%)

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
                  R +  VS  +     R +    F                   A  V +++ ++
Sbjct: 208 PTRPNDDRKSWRVSMTS-----RVVYDNEFGEPPQSRAPSQGVTAEQASATFVRAVMGSI 262

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSG-P 183
           YL  G   A  F ++++  R L   +         +L      +    P  K+   +G  
Sbjct: 263 YLHAGRPAAKRFFEQHFLSRHLNISELFNFSQPARDLSRLCARENFEPPVAKIISETGRK 322

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              P F V +        +G   S   A   AA   LK
Sbjct: 323 SRHPVFVVGIYSGQDKLGEGAGASLLEARSRAAVAALK 360


>gi|34098365|sp|Q8BY02|NKRF_MOUSE RecName: Full=NF-kappa-B-repressing factor; Short=NFkB-repressing
           factor; AltName: Full=Transcription factor NRF
          Length = 690

 Score = 39.5 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 409


>gi|322511164|gb|ADX06477.1| putative ribonuclease III [Organic Lake phycodnavirus 2]
          Length = 92

 Score = 39.5 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 40/78 (51%)

Query: 37  QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
           Q S ERLEF+GD IL ++    L+  F  A EG ++ +  +LV  +   ++A +L L  +
Sbjct: 15  QSSNERLEFIGDGILEMITKYYLYKRFPDADEGFMTEKKINLVKNDHIGKLAYKLGLHKW 74

Query: 97  IRVSSDLRKDVCSFMTSI 114
           + +S    +     +T  
Sbjct: 75  LLLSKQSEEKKIDVITKN 92


>gi|313237547|emb|CBY12695.1| unnamed protein product [Oikopleura dioica]
          Length = 853

 Score = 39.5 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 3/74 (4%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV--VVEISGLAPA-QGMDCSKR 209
                    +                  SG   + +F     +EI G   A      +K+
Sbjct: 384 NWTLELARSRLSEFFHKQGKQLNCEEKESGGPFNKQFVCSTEIEIDGEKFAASATAPNKK 443

Query: 210 AAEQVAAAEVLKRE 223
           +A++  A  ++ + 
Sbjct: 444 SAQKKCALSMVIQL 457


>gi|312212763|emb|CBX92846.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1067

 Score = 39.1 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKAL--THSSISHSYQ------ESYERLEFLGDRILGLL 54
           A+R   +E R GY F N+ L  +AL  T  +    Y+      +   RL  LGDR+LGL 
Sbjct: 124 AVRVGHIEARTGYNFKNKFLCIEALKNTGKNWPLYYKGVVVEIDRNNRLALLGDRVLGLA 183

Query: 55  ISTLLFNHFD 64
           +  + F+   
Sbjct: 184 LCEIWFHSGH 193


>gi|321253836|ref|XP_003192868.1| hypothetical protein CGB_C5540W [Cryptococcus gattii WM276]
 gi|317459337|gb|ADV21081.1| hypothetical protein CNC03670 [Cryptococcus gattii WM276]
          Length = 972

 Score = 39.1 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF- 60
             +        +     +  L  +A+T +   +  + +YERLE LGD +L  + +   + 
Sbjct: 487 EEMSAKEFNSIL-----DPELALQAITAAEGLNVPRWTYERLEILGDTLLKFITTLHFYL 541

Query: 61  ---NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                       ++    + L+S  T +  A +  L  +IR 
Sbjct: 542 LGGGADSEVDMNKVWQDRHMLISNRTLTANAVKQGLVKYIRN 583


>gi|303282409|ref|XP_003060496.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457967|gb|EEH55265.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 661

 Score = 39.1 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL-----KREGIW 226
           +F   V I G + A+    +K++A + A +  L     ++EG W
Sbjct: 529 QFVADVRIHGRSLARARGKTKKSAIRAATSRALDVVRAEKEGKW 572


>gi|78191784|ref|NP_084167.2| NF-kappa-B-repressing factor [Mus musculus]
 gi|123231949|emb|CAM19779.1| NF-kappaB repressing factor [Mus musculus]
 gi|187951215|gb|AAI38829.1| NF-kappaB repressing factor [Mus musculus]
 gi|187956749|gb|AAI38830.1| NF-kappaB repressing factor [Mus musculus]
          Length = 690

 Score = 39.1 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 373 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 409


>gi|261327625|emb|CBH10601.1| ATP-dependent DEAH-box RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 1439

 Score = 39.1 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 2/42 (4%)

Query: 187 PRFTVVVEISG--LAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
             F   + +       A G+  S + A+Q  A   L    + 
Sbjct: 292 RIFVATLLLDDTSQLSATGVATSLKEAKQRCAMHALNILKLI 333


>gi|224613107|dbj|BAH24216.1| dsRNA-specific ribonuclease RNaseIII [Onion yellows phytoplasma]
          Length = 149

 Score = 39.1 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 13/37 (35%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            T +YK+    GP H   F   V +       G   +
Sbjct: 79  KTIQYKIVQEQGPAHSKNFVAEVYLEKNLLGTGEGST 115


>gi|293351174|ref|XP_002727718.1| PREDICTED: NF-kappaB repressing factor-like [Rattus norvegicus]
          Length = 780

 Score = 39.1 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 466 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 502


>gi|56567165|gb|AAV98578.1| mitochondrial ribosomal protein L44 [Macaca mulatta]
          Length = 78

 Score = 39.1 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 14  PLYFVGLYCDKKLIAEGPGETVLVAEEEAARVALRKL 50


>gi|303320123|ref|XP_003070061.1| 54S ribosomal protein L3, mitochondrial precursor, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240109747|gb|EER27916.1| 54S ribosomal protein L3, mitochondrial precursor, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|320031896|gb|EFW13853.1| 60S ribosomal protein L3 [Coccidioides posadasii str. Silveira]
          Length = 372

 Score = 39.1 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 1/100 (1%)

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
              L+    +           +Q  +           +L +    +    P  ++   +G
Sbjct: 237 AIYLHCGRPVAKQFFKEHFMSRQLPVADLFSFAQPTRDLTKLCAREGFERPVARIISETG 296

Query: 183 P-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                P F V +        +G   S   A   AA   LK
Sbjct: 297 RLSRHPVFVVGIFSGADLLGEGSGPSLTEARFRAAVAALK 336


>gi|169595488|ref|XP_001791168.1| hypothetical protein SNOG_00483 [Phaeosphaeria nodorum SN15]
 gi|111070858|gb|EAT91978.1| hypothetical protein SNOG_00483 [Phaeosphaeria nodorum SN15]
          Length = 167

 Score = 39.1 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 1  MSAL--RYSTLEKRIGYAFANRSLLEKAL---THSSISH-----SYQESYERLEFLGDRI 50
          M+ +  + + +E+ IGY + ++ +  +AL                     + LE +GD I
Sbjct: 1  MANIEQKIAIIEQIIGYIYTDKLICLEALQMNMDPMYVSLGGIRHLVRKNKNLETVGDAI 60

Query: 51 LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
          +  ++    +   DS        +F+S +          
Sbjct: 61 IDAVLCKKWYEFRDSHGHRLSVEQFDSQIRQRNACNNFF 99


>gi|124487075|ref|NP_001074679.1| 39S ribosomal protein L44, mitochondrial precursor [Mus musculus]
 gi|74142583|dbj|BAE33863.1| unnamed protein product [Mus musculus]
 gi|148684323|gb|EDL16270.1| mCG21676 [Mus musculus]
          Length = 333

 Score = 39.1 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 68/236 (28%), Gaps = 21/236 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48
                 R+   F+   LL+ A  +S    S                   +  + L   G 
Sbjct: 72  VQAFGSRLQETFS-LDLLKTAFINSCYIKSEEAKRQSLGIEKEAALLNLKDNQELFEQGL 130

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
                 ++  L + F            + L        VAR L +      +        
Sbjct: 131 SFSHRCLTQFLEDEFPDLPAEGTESLVSFLTGEAVVCHVARNLAVEQLTLSAEFPVPL-- 188

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
             +      V+ +L+ +   +        F+      + L       +    L E    +
Sbjct: 189 PVLRQTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWTVVNPMGLLVEELKKR 248

Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 249 NISAPESRLTRQSGSTTALPLYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 304


>gi|74222039|dbj|BAE26840.1| unnamed protein product [Mus musculus]
          Length = 308

 Score = 39.1 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 68/236 (28%), Gaps = 21/236 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48
                 R+   F+   LL+ A  +S    S                   +  + L   G 
Sbjct: 47  VQAFGSRLQETFS-LDLLKTAFINSCYIKSEEAKRQSLGIEKEAALLNLKDNQELFEQGL 105

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
                 ++  L + F            + L        VAR L +      +        
Sbjct: 106 SFSHRCLTQFLEDEFPDLPAEGTESLVSFLTGEAVVCHVARNLAVEQLTLSAEFPVPL-- 163

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
             +      V+ +L+ +   +        F+      + L       +    L E    +
Sbjct: 164 PVLRQTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWTVVNPMGLLVEELKKR 223

Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 224 NISAPESRLTRQSGSTTALPLYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 279


>gi|74151695|dbj|BAE29642.1| unnamed protein product [Mus musculus]
 gi|74199060|dbj|BAE30743.1| unnamed protein product [Mus musculus]
          Length = 292

 Score = 39.1 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 68/236 (28%), Gaps = 21/236 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48
                 R+   F+   LL+ A  +S    S                   +  + L   G 
Sbjct: 31  VQAFGSRLQETFS-LDLLKTAFINSCYIKSEEAKRQSLGIEKEAALLNLKDNQELFEQGL 89

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
                 ++  L + F            + L        VAR L +      +        
Sbjct: 90  SFSHRCLTQFLEDEFPDLPAEGTESLVSFLTGEAVVCHVARNLAVEQLTLSAEFPVPL-- 147

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
             +      V+ +L+ +   +        F+      + L       +    L E    +
Sbjct: 148 PVLRQTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWTVVNPMGLLVEELKKR 207

Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 208 NISAPESRLTRQSGSTTALPLYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 263


>gi|68053231|sp|Q9CY73|RM44_MOUSE RecName: Full=39S ribosomal protein L44, mitochondrial;
           Short=L44mt; Short=MRP-L44; Flags: Precursor
          Length = 333

 Score = 39.1 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 68/236 (28%), Gaps = 21/236 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48
                 R+   F+   LL+ A  +S    S                   +  + L   G 
Sbjct: 72  VQAFGSRLQETFS-LDLLKTAFINSCYIKSEEAKRQSLGIEKEAALLNLKDNQELFEQGL 130

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
                 ++  L + F            + L        VAR L +      +        
Sbjct: 131 SFSHRCLTQFLEDEFPDLPAEGTESLVSFLTGEAVVCHVARNLAVEQLTLSAEFPVPL-- 188

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
             +      V+ +L+ +   +        F+      + L       +    L E    +
Sbjct: 189 PVLRQTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWPVVNPMGLLVEELKKR 248

Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 249 DISAPESRLTRQSGSTTALPLYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 304


>gi|109510373|ref|XP_233308.4| PREDICTED: NF-kappaB repressing factor [Rattus norvegicus]
          Length = 783

 Score = 39.1 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 466 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 502


>gi|328862737|gb|EGG11837.1| hypothetical protein MELLADRAFT_76432 [Melampsora larici-populina
           98AG31]
          Length = 1308

 Score = 39.1 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            R TVV +        G D SK+ AE++AA     + G
Sbjct: 81  QRVTVVADTGTNIIGTGDDPSKKEAEKLAALSACFQLG 118


>gi|254572081|ref|XP_002493150.1| Mitochondrial ribosomal protein of the large subunit [Pichia
           pastoris GS115]
 gi|238032948|emb|CAY70971.1| Mitochondrial ribosomal protein of the large subunit [Pichia
           pastoris GS115]
 gi|328352834|emb|CCA39232.1| 54S ribosomal protein L3, mitochondrial [Pichia pastoris CBS 7435]
          Length = 355

 Score = 39.1 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +P F V +        +G   S   A+  A    LK+
Sbjct: 288 NPIFIVGIFSGNDKLGEGQGPSILKAKTDACINSLKQ 324


>gi|189189610|ref|XP_001931144.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187972750|gb|EDU40249.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 949

 Score = 39.1 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 8   TLEKRIGYAFANRSLLEKAL-----THSSISHS---YQESYERLEFLGDRILGLLISTLL 59
            +E+ IGY F  +    +AL     T            +   RL  LGDR L L +S + 
Sbjct: 90  RVEESIGYTFKYKLYCIEALKQTNSTTPLYFQGVVINTDCNRRLALLGDRALDLALSEIW 149

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94
           F  +        +      V+    +    +++L 
Sbjct: 150 F--YTGNTLANYTAMSLKTVTRAALNTQGLQINLH 182


>gi|224049213|ref|XP_002188195.1| PREDICTED: similar to testis nuclear RNA-binding protein
           [Taeniopygia guttata]
          Length = 552

 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 21/61 (34%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   +  E+K T   G    P F     I+G+    G+  +K+  +  AA   L  
Sbjct: 102 HLYAKMHHLQLEFKETNLEGDIIRPYFAYCAVINGVCYKTGLGKNKKECKLNAAKLTLAE 161

Query: 223 E 223
            
Sbjct: 162 L 162


>gi|14249969|gb|AAH08370.1| STAU2 protein [Homo sapiens]
          Length = 105

 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F+V + +      +    S + A+Q  A + L
Sbjct: 5   NQMFSVQLSLGEQTW-ESEGSSIKKAQQAVANKAL 38


>gi|313219943|emb|CBY43644.1| unnamed protein product [Oikopleura dioica]
          Length = 813

 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 1/103 (0%)

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
            Q  +  +    +      ++        WK +  +     +    +             
Sbjct: 74  YQKKLFSAAQNYMGKKQKQDLMDNIRRFNWKVQNGQKSSRIKANDIKGYLHIWCNQRRVT 133

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVA 215
                   G  H   F+  ++ISGL   A     SK+ A+  A
Sbjct: 134 PEFDYKELGNRHKKLFSCSIQISGLDFVAIKEARSKKEAQNEA 176


>gi|284504268|ref|YP_003406983.1| ribonuclease III [Marseillevirus]
 gi|282935706|gb|ADB04021.1| ribonuclease III [Marseillevirus]
          Length = 312

 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%)

Query: 18 ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           N +    A TH ++  + + +YE  E +GD ++   I   +        + E   R   
Sbjct: 29 KNLAKFRVAFTHKTVQTNDRNNYELYELVGDSLVNAAILGFIRTKRPEITDVETLTRIKH 88

Query: 78 LVSAETC 84
           + + + 
Sbjct: 89 YIQSRSF 95


>gi|119495412|ref|XP_001264491.1| 60S ribosomal protein L3 [Neosartorya fischeri NRRL 181]
 gi|119412653|gb|EAW22594.1| 60S ribosomal protein L3 [Neosartorya fischeri NRRL 181]
          Length = 406

 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 1/70 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                  +L      +    P  K+   +G     P F V +        +G   S   A
Sbjct: 301 NFSQPARDLTRLCARENFERPVAKIISETGRKSRHPVFVVGIYSGQDKLGEGAGASLMEA 360

Query: 212 EQVAAAEVLK 221
              AA   LK
Sbjct: 361 RSRAAVAALK 370



 Score = 38.8 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 3/96 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
            + + + L  R+ Y  +   L  L +AL  SS   +   + E L  LG  +L    S  L
Sbjct: 81  ESAKLAALHARL-YLPSRLPLETLARALVDSSADPNPDFNNESLATLGHDLLTNYTSEHL 139

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95
              +       +     + V  +T S +ARE  +  
Sbjct: 140 ICTYPRLPLTVIFAAMYAYVGPKTLSAMAREWGVEM 175


>gi|42820678|emb|CAF31991.1| possible ribonuclease III [Aspergillus fumigatus]
          Length = 394

 Score = 39.1 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 1/70 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                  +L      +    P  K+   +G     P F V +        +G   S   A
Sbjct: 289 NFSQPARDLTRLCARENFERPVAKIISETGRKSRHPVFVVGIYSGQDKLGEGAGASLMEA 348

Query: 212 EQVAAAEVLK 221
              AA   LK
Sbjct: 349 RSRAAVAALK 358



 Score = 35.7 bits (80), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
            + + + L  R+ Y  +   L  L +AL  +S   +   + E L  LG  +L    S  L
Sbjct: 81  ESAKLAALHARL-YLPSRLPLETLARALVDASADPNPDFNNESLATLGHDLLTNYTSEHL 139

Query: 60  FNHFDSAK 67
              +    
Sbjct: 140 ICTYPRLP 147


>gi|242044684|ref|XP_002460213.1| hypothetical protein SORBIDRAFT_02g024705 [Sorghum bicolor]
 gi|241923590|gb|EER96734.1| hypothetical protein SORBIDRAFT_02g024705 [Sorghum bicolor]
          Length = 172

 Score = 39.1 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 7/54 (12%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEI--SGLAPAQGMDCS-----KRAAEQVAAAEVL 220
                   GP H+  F   V +   GL        S     K+AA + AA   L
Sbjct: 108 PQFDFEEQGPQHNKTFKCKVTVHLDGLLNTIMECFSKPNPRKKAARENAAQGAL 161


>gi|72255535|ref|NP_001026820.1| 39S ribosomal protein L44, mitochondrial [Rattus norvegicus]
 gi|71051110|gb|AAH98715.1| Mitochondrial ribosomal protein L44 [Rattus norvegicus]
 gi|149016242|gb|EDL75488.1| mitochondrial ribosomal protein L44 [Rattus norvegicus]
          Length = 332

 Score = 39.1 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 21/236 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------YQESYERLEFLGD 48
                 R+  AF+   LL+ A  +S    S                   +  + L   G 
Sbjct: 72  IQAFGSRLQEAFS-LDLLKTAFVNSCYIKSEEAKRQNLGIEKEAALLNLKDNQELFEQGL 130

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
                 ++  L + F +     +    N L        VA  L +      +        
Sbjct: 131 SFSHRCLTQFLEDEFPNLPTEGIESLVNFLTGEAVVCHVASNLAVEQLTLSAEFPVPQ-- 188

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
             +      V+ +L+ +   +        F+      + L       +    L E    +
Sbjct: 189 PVLRRTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWTIVNPMGLLVEELKKR 248

Query: 169 FGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 249 NISAPESRLTRQSGSTTALPLYFVGLYCDKRLIAEGPGETVLVAEEEAARVALRKL 304


>gi|198473861|ref|XP_001356477.2| GA20129 [Drosophila pseudoobscura pseudoobscura]
 gi|198138140|gb|EAL33541.2| GA20129 [Drosophila pseudoobscura pseudoobscura]
          Length = 314

 Score = 39.1 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211
            RD   EL+++        P  ++  + G    P F     ++ +        S  K+ A
Sbjct: 96  NRDMLKELRDYCVRHEMPLPLIEIVQQCGTPDAPEFLACCSVASIKR---YGKSDKKKDA 152

Query: 212 EQVAAAEVL 220
            Q AA E+L
Sbjct: 153 RQRAAIEML 161


>gi|195147336|ref|XP_002014636.1| GL19287 [Drosophila persimilis]
 gi|194106589|gb|EDW28632.1| GL19287 [Drosophila persimilis]
          Length = 314

 Score = 39.1 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAA 211
            RD   EL+++        P  ++  + G    P F     ++ +        S  K+ A
Sbjct: 96  NRDMLKELRDYCVRHEMPLPLIEIVQQCGTPDAPEFLACCSVASIKR---YGKSDKKKDA 152

Query: 212 EQVAAAEVL 220
            Q AA E+L
Sbjct: 153 RQRAAIEML 161


>gi|289619592|emb|CBI53875.1| unnamed protein product [Sordaria macrospora]
          Length = 441

 Score = 39.1 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 37/110 (33%), Gaps = 3/110 (2%)

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD--AKTELQEWAHAKFGVT 172
            A  V +++ A+Y   G E A  FV  +   R L   K         EL      +    
Sbjct: 294 HAHFVRAVVGAIYAHCGREAAKAFVKGHIMSRTLDIAKLFEFKYPTRELAALCAREDFEP 353

Query: 173 PEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P  ++   +G     P F V +        +G   S   A   AA   LK
Sbjct: 354 PVARLVSETGRQSRTPVFVVGIYSGSDKLGEGAGASLDHARFKAAMNALK 403


>gi|148697037|gb|EDL28984.1| NF-kappaB repressing factor, isoform CRA_b [Mus musculus]
          Length = 751

 Score = 39.1 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 434 NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 470


>gi|170037638|ref|XP_001846663.1| ribonuclease iii [Culex quinquefasciatus]
 gi|167880947|gb|EDS44330.1| ribonuclease iii [Culex quinquefasciatus]
          Length = 166

 Score = 39.1 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 15/45 (33%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              + P     + +     G   A     S + AE  AA + L+ 
Sbjct: 64  IECNSPTSTRVYMMADYFRGKGLACSNGHSTQQAEMNAAKQALEN 108


>gi|50306031|ref|XP_452977.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642110|emb|CAH01828.1| KLLA0C17402p [Kluyveromyces lactis]
          Length = 241

 Score = 39.1 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           ++ G    +  ++ + LTH S +   +   ++L  +G   +       
Sbjct: 66  EKYGIDLPD-DIITQCLTHKSFAQGIKPYNQKLSIIGGHFVKYQACLH 112


>gi|316973958|gb|EFV57499.1| putative double-stranded RNA binding motif protein [Trichinella
           spiralis]
          Length = 514

 Score = 38.8 bits (88), Expect = 0.53,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G   SK+ A+  AA + LK  
Sbjct: 265 IGVGNGNSKKNAKLEAARQALKVL 288


>gi|195343659|ref|XP_002038413.1| GM10632 [Drosophila sechellia]
 gi|194133434|gb|EDW54950.1| GM10632 [Drosophila sechellia]
          Length = 321

 Score = 38.8 bits (88), Expect = 0.53,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 73/234 (31%), Gaps = 19/234 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRI 50
                KR+G +F   S L++A T  S +   +                    L   G  I
Sbjct: 67  LFAFGKRLGESFE-LSELQRAFTEKSFAEREENRRRQLGIEESDLQMPHNSDLVEKGQHI 125

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
               +   L +         L    + L+S ET + V+  L     I+ +          
Sbjct: 126 ARAYVEAFLQHQLPKVPNEGLQAIASFLLSTETLAHVSSHLGTKDLIQSTEYP--PSAES 183

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
           +      V+ +L ++  ++        F+     Q+ L      +     L++    +  
Sbjct: 184 LAKSLHAVIGALASSSGIERAFIFVRDFICTQLNQKDLLDVWTPQKPIQLLEKICQERKL 243

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              E ++    G +     + V +  +     +G     + A + AA + L+  
Sbjct: 244 GEAEPRLLGDCGKNTVLAAYQVGIYANRQLLGKGFGEDVKTATETAALDALQSI 297


>gi|195036694|ref|XP_001989803.1| GH18997 [Drosophila grimshawi]
 gi|193893999|gb|EDV92865.1| GH18997 [Drosophila grimshawi]
          Length = 321

 Score = 38.8 bits (88), Expect = 0.53,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 68/234 (29%), Gaps = 19/234 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRI 50
                KR+   F    LL+ A T  + +H  QE                  +L   G  I
Sbjct: 67  LFAFGKRLNEDFQ-LPLLQTAFTQRTYAHQEQERQRKLGIAEADLQMGDNSQLATKGVHI 125

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
               I   L N              + L+S ET + V   L     I  +          
Sbjct: 126 AKAYIEAYLQNALPKVPPVGQQAIASYLLSTETLAHVCTHLGAKELIFSTEYP--PSSET 183

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
           +      ++ +L  +  ++        F+     Q+ L            L E    K  
Sbjct: 184 LAQTLHAIIGALSDSSGVERAFLFVRDFICTQLNQKDLLEIWTPEQPLQLLGEICTQKKL 243

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             PE ++    G +     + V +  +     +G     + A + AA + L+  
Sbjct: 244 GEPEPRLLGDCGKNTVLAAYHVGIYANRQLLGKGFGEDLQMATETAAIDALQTL 297


>gi|313214863|emb|CBY41096.1| unnamed protein product [Oikopleura dioica]
          Length = 750

 Score = 38.8 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 3/74 (4%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV--VVEISGLAPA-QGMDCSKR 209
                    +                  SG   + +F     +EI G   A      +K+
Sbjct: 384 NWTLELARSRLSEFFHKQGKQLNCEEKESGGPFNKQFVCSTEIEIDGEKFAASATAPNKK 443

Query: 210 AAEQVAAAEVLKRE 223
           +A++  A  ++ + 
Sbjct: 444 SAQKKCALSMVIQL 457


>gi|21226646|ref|NP_632568.1| exoribonuclease II [Methanosarcina mazei Go1]
 gi|20904927|gb|AAM30240.1| Exoribonuclease II [Methanosarcina mazei Go1]
          Length = 605

 Score = 38.8 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                 G  + P FT      G + + G    K+ A+++AA  ++
Sbjct: 555 YSFEMEGATNRPIFTCTCTF-GSSTSTGQAGKKQRAKRLAARAMI 598


>gi|145486836|ref|XP_001429424.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74830341|emb|CAI39051.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia]
 gi|124396516|emb|CAK62026.1| unnamed protein product [Paramecium tetraurelia]
          Length = 725

 Score = 38.8 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 5/175 (2%)

Query: 15  YAFA---NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           Y      N   +E+A++  S +   Q +Y+ LE LGD ++  L S +LF       E  L
Sbjct: 336 YKINRLANLDRVEEAISCPSFNS--QRNYQNLEMLGDVVIKYLTSAMLFEDSKYKTENTL 393

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           S     L++ +  S +   L L +     +  +      M   + +  +           
Sbjct: 394 SSARVRLITNKHLSSIYGNLKLNAMNFKINSKKLLNHMMMIINEHEDSKLSQKQQADIYE 453

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
                 ++  Y  +  +   K  +          +    +     ++   G D+D
Sbjct: 454 ALCGACYIKNYQFKDLMDFFKLTKLEFQGTVPQYYKGNPLIDFSIISQDPGKDND 508



 Score = 36.1 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +   +  +G      +L+ +A+T         + +ERLEF GD IL LL+   +    + 
Sbjct: 530 FEEFQDYLGCK---LNLIAEAMT--------VDQFERLEFFGDAILELLVIVNVHKECEK 578

Query: 66  AKEGELSVRFN 76
                   +  
Sbjct: 579 LYYNPRQQQLC 589


>gi|157107592|ref|XP_001649849.1| hypothetical protein AaeL_AAEL004808 [Aedes aegypti]
 gi|108879546|gb|EAT43771.1| conserved hypothetical protein [Aedes aegypti]
          Length = 919

 Score = 38.8 bits (88), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 51/165 (30%), Gaps = 3/165 (1%)

Query: 45  FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL--ASFIRVSSD 102
           F G   +  L    L   +        S++  + V+      + +++       +    +
Sbjct: 734 FFGSTGVQCLTPRELAEGYQPW-AKRDSMKQTAPVTGGMGMHLLQKMGWVPGEGLGKEKN 792

Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
              +       +    + +           ++      +  +  ++K     +   + L 
Sbjct: 793 GSLEPLLLDVKLDKRGLVASAEDHQRQVQFQIQQQHSGRRARFMSVKINTDGKHPVSILG 852

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           E+   +  + P Y +   SGP H   F   V ++GL     +  +
Sbjct: 853 EYCSKRKWMPPRYDLVHESGPGHAKNFVFKVIVNGLEYQPAIANN 897


>gi|319803056|ref|NP_001188373.1| ATP-dependent RNA helicase A-like [Danio rerio]
          Length = 1270

 Score = 38.8 bits (88), Expect = 0.58,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                         +G  +  +F   V +   +    G   +K+ A+  AA +
Sbjct: 12  CGKKKLTPNYDIRAAGNKNRQKFMCEVRVESYSYIGMGNSTNKKDAQSNAARD 64


>gi|169154685|emb|CAQ13278.1| novel protein similar to vertebrate DEAH (Asp-Glu-Ala-His) box
           polypeptide 9 (DHX9) [Danio rerio]
          Length = 1271

 Score = 38.8 bits (88), Expect = 0.58,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
                         +G  +  +F   V +   +    G   +K+ A+  AA +
Sbjct: 12  CGKKKLTPNYDIRAAGNKNRQKFMCEVRVESYSYIGMGNSTNKKDAQSNAARD 64


>gi|72388056|ref|XP_844452.1| ATP-dependent DEAH-box RNA helicase [Trypanosoma brucei TREU927]
 gi|62359371|gb|AAX79809.1| ATP-dependent DEAH-box RNA helicase, putative [Trypanosoma brucei]
 gi|70800985|gb|AAZ10893.1| ATP-dependent DEAH-box RNA helicase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 1440

 Score = 38.8 bits (88), Expect = 0.58,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 2/41 (4%)

Query: 187 PRFTVVVEISG--LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             F   + +       A G+  S + A+Q  A   L    +
Sbjct: 292 RIFVATLLLDDTSQLSATGVATSLKEAKQRCAMHALNILKL 332


>gi|145473673|ref|XP_001462500.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74830346|emb|CAI39052.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia]
 gi|124430340|emb|CAK95127.1| unnamed protein product [Paramecium tetraurelia]
          Length = 721

 Score = 38.8 bits (88), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
                  E+ +G      S L +A+T         E YERLEFLGD IL  LI   +   
Sbjct: 519 NQSLDKFEQFLGCK---LSRLNEAMT--------VEDYERLEFLGDAILEFLIVANVHKE 567

Query: 63  FDSAKEGELSVRFN 76
            +     +   +  
Sbjct: 568 CEKYYYSQDQQQMC 581


>gi|242218623|ref|XP_002475100.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725717|gb|EED79692.1| predicted protein [Postia placenta Mad-698-R]
          Length = 154

 Score = 38.8 bits (88), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 25/92 (27%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           E               K+ +   ++              T     T +   +  P +  +
Sbjct: 54  ETGSCRRMTILNPEVRKAKRSGMNSYNTTSNNGATPQAPTALRWETRQVMSEDPPNWEAI 113

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             I      +G   S  AA+ +AA   LK   
Sbjct: 114 AYIHDTDFGRGTGISLPAAKDIAAERALKELK 145


>gi|61097971|ref|NP_001012905.1| NF-kappa-B-repressing factor [Gallus gallus]
 gi|53136634|emb|CAG32646.1| hypothetical protein RCJMB04_31o11 [Gallus gallus]
          Length = 768

 Score = 38.8 bits (88), Expect = 0.61,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 450 NRMWRCRVYLQDHCLAEGYG-TKKTSKHTAADEALKIL 486


>gi|331219058|ref|XP_003322206.1| ATP-dependent RNA helicase A [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309301196|gb|EFP77787.1| ATP-dependent RNA helicase A [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 1575

 Score = 38.8 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH-DPRFTVV 192
                + K+W        ++ ++ K  L  +        P+Y       P    P F   
Sbjct: 80  YNSQEIRKFWTANLPPRPEWSQNPKGILNNFCQHLTHPLPKYHSQQVILPGFTQPLFRAT 139

Query: 193 VEISG--LAPAQGMDCSKRAAEQVAAAEVLKREG 224
           V +         G D SK+ AE++AA  V  + G
Sbjct: 140 VHLEIAPDIVGIGDDLSKKEAEKIAALSVCFQLG 173


>gi|311273132|ref|XP_001926172.2| PREDICTED: 39S ribosomal protein L44, mitochondrial-like [Sus
           scrofa]
          Length = 118

 Score = 38.8 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 54  PVYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 90


>gi|312074021|ref|XP_003139783.1| hypothetical protein LOAG_04198 [Loa loa]
 gi|307765056|gb|EFO24290.1| hypothetical protein LOAG_04198 [Loa loa]
          Length = 184

 Score = 38.8 bits (88), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQ 213
           +   + L E    K    P++     SGP ++ RF     ++G+         SK+  + 
Sbjct: 92  KHPVSVLMELCSKKRWHAPQFTCLE-SGPSNNRRFLWKAVVNGVEYQPSTPSTSKKTGKA 150

Query: 214 VAAAEVLKREGI 225
            A   VL+  G+
Sbjct: 151 QACQVVLQSLGL 162


>gi|47204712|emb|CAF92259.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 54

 Score = 38.8 bits (88), Expect = 0.64,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + + G     G   +++AA   AA + L+  
Sbjct: 8   KIFFVQLSV-GSYEFIGEGRTRQAARHSAAMKALQTL 43


>gi|328715219|ref|XP_003245565.1| PREDICTED: hypothetical protein LOC100573606 [Acyrthosiphon pisum]
          Length = 339

 Score = 38.8 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            F V VEI  +    G+  SK+AA++    E +K
Sbjct: 289 VFNVKVEIDNITF-TGLGSSKKAAKRECCIEAIK 321



 Score = 37.2 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           ++  R+T  +++ G     G   SK  A+Q A    L+
Sbjct: 129 NNVKRYTATLQVDGQVY-TGNHNSKIKAKQKACEHFLR 165


>gi|195132297|ref|XP_002010580.1| GI14602 [Drosophila mojavensis]
 gi|193909030|gb|EDW07897.1| GI14602 [Drosophila mojavensis]
          Length = 338

 Score = 38.8 bits (88), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           D  FT +V ++     +G   SK AA+ +A  + L+
Sbjct: 114 DGGFTAIVTVNTRQY-EGKGPSKMAAKNLACEKALR 148


>gi|148671307|gb|EDL03254.1| mCG115971 [Mus musculus]
          Length = 102

 Score = 38.8 bits (88), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 9  LEKRIGYAFANRSLLEKALTHSSISHSYQES 39
          L+K IGY F +R LL+ A+TH S   ++  +
Sbjct: 21 LDKLIGYTFQDRCLLQLAMTHPSHHLNFGMN 51


>gi|26347803|dbj|BAC37550.1| unnamed protein product [Mus musculus]
          Length = 329

 Score = 38.4 bits (87), Expect = 0.69,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  +   V +     A+G   +K+ ++  AA E LK  
Sbjct: 12  NRTWRCRVFLQDHCLAEGYG-TKKTSKHAAADEALKVL 48


>gi|58332356|ref|NP_001011033.1| ATP-binding cassette, sub-family A (ABC1), member 4 [Xenopus
            (Silurana) tropicalis]
 gi|46393906|gb|AAS91491.1| retinal-specific ATP transporter ABCA4 [Xenopus (Silurana)
            tropicalis]
          Length = 2359

 Score = 38.4 bits (87), Expect = 0.69,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 4/67 (5%)

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG--MDCSKRAAEQVAAAE 218
            +              + +    P H+  F   + +             S++ AE+ A   
Sbjct: 1055 VWVRGRDIQTHMDSIRQSLGMCPQHNILFR-HLTVEEHILFYAQLKGKSRKQAERQA-EV 1112

Query: 219  VLKREGI 225
            +L+  GI
Sbjct: 1113 MLEDMGI 1119


>gi|113931358|ref|NP_001039125.1| NFKB repressing factor [Xenopus (Silurana) tropicalis]
 gi|89268905|emb|CAJ81865.1| similar to nkrf (NF-kappaB repressing factor) [Xenopus (Silurana)
           tropicalis]
 gi|111305543|gb|AAI21306.1| NFKB repressing factor [Xenopus (Silurana) tropicalis]
          Length = 791

 Score = 38.4 bits (87), Expect = 0.69,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +   V + G   A+G   +K+ ++  AA E ++   
Sbjct: 483 WKCSVFVQGHCVAEGYG-NKKNSKHAAAKEAVRILK 517


>gi|145551869|ref|XP_001461611.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429446|emb|CAK94238.1| unnamed protein product [Paramecium tetraurelia]
          Length = 313

 Score = 38.4 bits (87), Expect = 0.69,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 73/239 (30%), Gaps = 29/239 (12%)

Query: 16  AFANRSLLEKAL---TH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            F N+ LL +AL    H       +       + E     G +++       +       
Sbjct: 7   EFRNQKLLVQALSNKIHETEYFQKTGKLYQYGNNEEFSIDGQQLIEFYFYDYMLLQGFPN 66

Query: 67  KEGELSVRFNSLVSAE---TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           ++ +     + +   +       ++    L +   + S   +        + +D ++S+I
Sbjct: 67  QQSQFKKPSDIIQLRQRLINDKYLSEIATLLNLQNLVSVGNQKSLKNNPKVLSDCLKSVI 126

Query: 124 AALYLDGGIEVAGTFVDKYW---------KQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
            A Y D   ++       +          ++  LK  K+   +        +        
Sbjct: 127 GAHYYDKQNDLEVLRDLIHPIIAQLLNKGQEIGLKKWKYNPKSSFLEFLNQYKGQLGINP 186

Query: 175 YKVTFRSGPD-----HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKREGI 225
                    D     ++  + + +E++     Q +  +KR  EQ    E    L++  I
Sbjct: 187 KLTIEWKKDDTILNQNNSYYQITLELNSNFQIQKIGINKRETEQNVYQEALVYLRKLNI 245


>gi|162463399|ref|NP_001106055.1| ribonuclease III domain protein1 [Zea mays]
 gi|149980667|gb|ABR53724.1| chloroplast ribonuclease III domain protein [Zea mays]
 gi|194704042|gb|ACF86105.1| unknown [Zea mays]
 gi|195647406|gb|ACG43171.1| RNA binding protein [Zea mays]
 gi|223950477|gb|ACN29322.1| unknown [Zea mays]
          Length = 525

 Score = 38.4 bits (87), Expect = 0.72,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 51/186 (27%), Gaps = 14/186 (7%)

Query: 22  LLEKALTH--SSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           L   A  H   S   +        + RL FLG  +L L         +     G +  R 
Sbjct: 156 LFYLAFQHLDPSSERTRMRHVRNGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 215

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            +L+  +   +  +   L + +    DL K +          V  ++  A+YL  G+   
Sbjct: 216 FALIGKKVLPRWLKAASLHNLVFPYDDLDKMIRKDREPPSKAVFWAIFGAIYLCFGMPEV 275

Query: 136 GT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDP 187
               F                R    ++   +         ++      P       H  
Sbjct: 276 YRVLFEAFGMDPDDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPR 335

Query: 188 RFTVVV 193
            F   V
Sbjct: 336 LFRACV 341



 Score = 38.0 bits (86), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 18  ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S       +  YERLE++G +I  L+++  L      A    L+
Sbjct: 382 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDLVMAERLLMKHLDAPGRWLA 441

Query: 73  VRFNSLVSAETCSQVARELDLASFIRV 99
            +    +  + C +  R+  L  +I  
Sbjct: 442 EKHRRTLMNKYCGRYLRDKHLQHYIIY 468


>gi|241999660|ref|XP_002434473.1| double-stranded RNA-specific editase B2, putative [Ixodes
           scapularis]
 gi|215497803|gb|EEC07297.1| double-stranded RNA-specific editase B2, putative [Ixodes
           scapularis]
          Length = 683

 Score = 38.4 bits (87), Expect = 0.75,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            + GP H P F V V++ G     G   SK
Sbjct: 83  SQEGPAHQPSFVVSVDVDGQTF-TGRGQSK 111


>gi|194764847|ref|XP_001964539.1| GF22997 [Drosophila ananassae]
 gi|190614811|gb|EDV30335.1| GF22997 [Drosophila ananassae]
          Length = 453

 Score = 38.4 bits (87), Expect = 0.75,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             V ++    A G   + + A+Q A  + L
Sbjct: 220 AEVLVNDQVIATGQGENLKVAKQAAFKQAL 249


>gi|147866536|emb|CAN81584.1| hypothetical protein VITISV_023190 [Vitis vinifera]
          Length = 1236

 Score = 38.4 bits (87), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/199 (10%), Positives = 51/199 (25%), Gaps = 13/199 (6%)

Query: 4   LRYSTLEKRIGYAFANRS---------LLEKALTHSSISHSYQESY--ERLEFLGDRILG 52
           +R+  L +       ++          LL  A+TH+S      + +  E L  L D +  
Sbjct: 765 IRWILLLQEFNLQIKDKKGVENVVVNHLLRLAITHNSHGLPINDDFPEESLMLLEDALWY 824

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
             I+  L      ++      +           +        ++  +   + +     + 
Sbjct: 825 AHIANYLGIEEVPSEWKAQDRKHFFAKIHAYYWEELFFFKYCAYQIIKKCVPEQEQQGIL 884

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT--ELQEWAHAKFG 170
           +   +       A +      +   F      + +    +     +   +L         
Sbjct: 885 THCHESACEDHFAFHKTTMKVLQSGFSWPSLFKDSHTMCRSCDRCQRLGKLTRRNQMPMN 944

Query: 171 VTPEYKVTFRSGPDHDPRF 189
                 +    G D    F
Sbjct: 945 PILIVDLFDVWGIDFIGPF 963


>gi|195435714|ref|XP_002065824.1| GK18621 [Drosophila willistoni]
 gi|194161909|gb|EDW76810.1| GK18621 [Drosophila willistoni]
          Length = 297

 Score = 38.4 bits (87), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              R+   EL ++ ++    +P +++  +S   + P+F     ++ +    G+   K+ A
Sbjct: 90  DPNRNMFKELWDFCNSHDMPSPIFEMVEKSRNPNAPKFVACCTLASIKR-YGISDKKKEA 148

Query: 212 EQVAAAEVL 220
            Q AA+ +L
Sbjct: 149 HQRAASAIL 157


>gi|221120974|ref|XP_002166223.1| PREDICTED: similar to adenosine deaminase [Hydra magnipapillata]
          Length = 858

 Score = 38.4 bits (87), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 22/90 (24%), Gaps = 2/90 (2%)

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
                E   +      K+  +       D           +             G   D 
Sbjct: 123 YSFSDEREISQKMVNQKEFFMDRQAVDEDKVRCHPAMMLTETFPKLVINYVEGLGK-GDH 181

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           +F    EI+G     G   SK+ A+   A 
Sbjct: 182 QFKAAAEINGN-MFYGEGRSKKIAKINLAK 210


>gi|325115118|emb|CBZ50674.1| putative ATP-dependent helicase [Neospora caninum Liverpool]
          Length = 1394

 Score = 38.4 bits (87), Expect = 0.77,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 186 DPRFTVVV--EISG--LAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  F   +   I+G      +G+  SK+ A++ A   +L + G
Sbjct: 198 NQFFKASLSWTIAGNRKIQTEGIGRSKKDAKKEAVKALLGQLG 240


>gi|19113607|ref|NP_596815.1| mitochondrial ribosomal protein subunit L15 [Schizosaccharomyces
           pombe 972h-]
 gi|74626357|sp|Q9Y7Z7|RM15_SCHPO RecName: Full=60S ribosomal protein L15, mitochondrial; Flags:
           Precursor
 gi|5579046|emb|CAB51333.1| mitochondrial ribosomal protein subunit L15 [Schizosaccharomyces
           pombe]
          Length = 210

 Score = 38.4 bits (87), Expect = 0.77,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 2/125 (1%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            +++SL E+ +TH S  H  +   E    +G+ ++ + +        + +         N
Sbjct: 65  ISDKSLREQIVTHKSYKHGLKRYNEPFVSVGNAVIDVCLLNHYLESGNFSTIPSYKDLVN 124

Query: 77  --SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             S       ++          I           S    I + +V  L+A +Y   G   
Sbjct: 125 LRSPARLAEVAKKWNPETATQCILPLKGPNSPSSSSFEKIYSSIVSGLVAVVYFQKGGVE 184

Query: 135 AGTFV 139
           A  F 
Sbjct: 185 AMNFC 189


>gi|83771830|dbj|BAE61960.1| unnamed protein product [Aspergillus oryzae]
          Length = 129

 Score = 38.4 bits (87), Expect = 0.77,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 5  RYSTLEKRIGYAFANRSLLEKAL-THSSIS---HSYQESYERLEFLGDRILGLLISTLLF 60
          R   +E+ I Y F N + + +AL T  S++       + ++ L  LGD  L L+++   +
Sbjct: 25 RIQLIEQIINYTFTNPATIHEALRTPGSMAILTPHRLDGHKDLAQLGDAALRLVLAKDGY 84

Query: 61 NHF 63
             
Sbjct: 85 QAH 87


>gi|326506566|dbj|BAJ91324.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 493

 Score = 38.4 bits (87), Expect = 0.79,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 18  ANRSL---LEKALTHSS-ISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S     + +  +ERLE++G +I  L+++  L      A    LS
Sbjct: 384 RNIELGLGLQLCFMHPSKYKFEHPRFCFERLEYVGQKIQDLVLAERLLMKHLDAPGRWLS 443

Query: 73  VRFNSLVSAETCSQVARELDLASFIRV 99
            +   L+  + C +  R   L  +I  
Sbjct: 444 EKHRRLLMNKYCGRYLRGKHLHHYIIY 470



 Score = 36.1 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 52/186 (27%), Gaps = 14/186 (7%)

Query: 22  LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           LL     H       + +   +  + RL FLG  +L L         +     G +  R 
Sbjct: 158 LLYLVFQHLDPSSERTRTRHVRNGHSRLWFLGQFVLELAFCEFFLQRYPRESPGPMRERV 217

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            +L+  +   +  +   L + +    DL K +          V  +L  A+YL  G+   
Sbjct: 218 FALIGKKMLPKWIKAASLHNLVFPYDDLDKMLRKDREPPTKAVFWALFGAIYLCFGMPEV 277

Query: 136 GT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDP 187
               F                R    ++   +         ++      P       H  
Sbjct: 278 YRVLFEAFGMDPEEESCQPKLRRQLEDVDYVSVEFEKRQLAWQDVAAYRPPADALFAHPR 337

Query: 188 RFTVVV 193
            F   V
Sbjct: 338 LFRACV 343


>gi|326495340|dbj|BAJ85766.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326503490|dbj|BAJ86251.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520661|dbj|BAJ92694.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score = 38.4 bits (87), Expect = 0.79,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 18  ANRSL---LEKALTHSS-ISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S     + +  +ERLE++G +I  L+++  L      A    LS
Sbjct: 384 RNIELGLGLQLCFMHPSKYKFEHPRFCFERLEYVGQKIQDLVLAERLLMKHLDAPGRWLS 443

Query: 73  VRFNSLVSAETCSQVARELDLASFIRV 99
            +   L+  + C +  R   L  +I  
Sbjct: 444 EKHRRLLMNKYCGRYLRGKHLHHYIIY 470



 Score = 36.1 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 52/186 (27%), Gaps = 14/186 (7%)

Query: 22  LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           LL     H       + +   +  + RL FLG  +L L         +     G +  R 
Sbjct: 158 LLYLVFQHLDPSSERTRTRHVRNGHSRLWFLGQFVLELAFCEFFLQRYPRESPGPMRERV 217

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            +L+  +   +  +   L + +    DL K +          V  +L  A+YL  G+   
Sbjct: 218 FALIGKKMLPKWIKAASLHNLVFPYDDLDKMLRKDREPPTKAVFWALFGAIYLCFGMPEV 277

Query: 136 GT--FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP------DHDP 187
               F                R    ++   +         ++      P       H  
Sbjct: 278 YRVLFEAFGMDPEEESCQPKLRRQLEDVDYVSVEFEKRQLAWQDVAAYRPPADALFAHPR 337

Query: 188 RFTVVV 193
            F   V
Sbjct: 338 LFRACV 343


>gi|145550957|ref|XP_001461156.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74830689|emb|CAI39096.1| Dicer-like ribonuclease with mutated helicase and Rnase III domains
            [Paramecium tetraurelia]
 gi|124428989|emb|CAK93783.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1566

 Score = 38.4 bits (87), Expect = 0.79,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI 32
            Y   E+ I Y F +  LL +ALT  S 
Sbjct: 1265 YQKFEEIIKYQFNSFELLFQALTDVSF 1291


>gi|168054513|ref|XP_001779675.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668873|gb|EDQ55471.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 461

 Score = 38.4 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 6/175 (3%)

Query: 21  SLLEKALTHS-SISHSY----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           +LL  A  H  S+        ++++ RL FLG+ +L L ++ L+   F     G L  R 
Sbjct: 93  TLLYLAFQHPDSVRARKAPYVRKAHSRLAFLGEYVLELAMAELVLQMFPRELVGSLRERV 152

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEV 134
             L + +      +   +   I    D  +   S        V  +++AA+YL  G  EV
Sbjct: 153 FGLTNKKVLPDWLKNASMDRLIYPDGDWGEIKWSDKLKPCKSVFHAIVAAIYLTLGMPEV 212

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
                + +         + R     ++   +    G    ++      P  +  F
Sbjct: 213 YRVLFEAFGFDVDAPQFQPRPRVCEDVDHLSPELDGERLSWQDIAYYQPPEEALF 267



 Score = 38.0 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 18  ANRSL---LEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S   +   +   ERLE+LG ++  ++++  +      A    + 
Sbjct: 318 RNIELQLGLQLCFLHPSAHKAEHPRFCNERLEYLGSKVQDVIMAEKILMKHLDAPGAWIE 377

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
            R   L+    C    R L L   I  S + R
Sbjct: 378 ERHRRLLLNRLCGLYLRNLKLHHHIVYSDERR 409


>gi|145354761|ref|XP_001421645.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581883|gb|ABO99938.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 389

 Score = 38.4 bits (87), Expect = 0.85,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFR--SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
              +              + KV     SG      F + +++     A+G   + +AA+ 
Sbjct: 298 HPVSATHALMDILHAPKSKRKVVEWVGSGSKGGGLFEIELKLGSSVRARGEGRTVKAAKF 357

Query: 214 VAAA---EVLK 221
            AA      LK
Sbjct: 358 EAARGAFAALK 368


>gi|322712474|gb|EFZ04047.1| 60S ribosomal protein L3 [Metarhizium anisopliae ARSEF 23]
          Length = 392

 Score = 38.4 bits (87), Expect = 0.85,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 25/71 (35%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L +AL   S   +   +   L FLG  I+   +   L   +       L     +    E
Sbjct: 98  LARALITPSADANGSFNNSNLAFLGSTIINYHVLEYLVCKWPRLPMAILYEALRAFSGQE 157

Query: 83  TCSQVARELDL 93
           +  QVAR   +
Sbjct: 158 SLQQVARRWGV 168



 Score = 36.8 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 3/110 (2%)

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVT 172
            A  V++++ ++Y   G E A +FV  +   R     +    +    EL      +    
Sbjct: 247 FASFVQAVVGSIYAHCGREAAKSFVTSHILSRQFDPSELFQFQLPTRELAMLCAREGFEA 306

Query: 173 PEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P  ++   +G     P F V +        +G   S   A + A+  VLK
Sbjct: 307 PVARLESETGRLSKTPVFVVGIYSGKEKLGEGAGPSLDIARRKASMNVLK 356


>gi|238489357|ref|XP_002375916.1| 60S ribosomal protein L3 [Aspergillus flavus NRRL3357]
 gi|220698304|gb|EED54644.1| 60S ribosomal protein L3 [Aspergillus flavus NRRL3357]
          Length = 403

 Score = 38.4 bits (87), Expect = 0.85,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 3/117 (2%)

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWA 165
                   A  V +++ A+YL  G   A  F ++++  R L             +L    
Sbjct: 251 GVTAEHANATFVRAVMGAIYLHAGRPAAKRFFEQHFLSRHLNISDLFNFSQPARDLSRLC 310

Query: 166 HAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +    P  K+   +G     P F V +        +G   S   A   AA   LK
Sbjct: 311 ARENFEPPVAKIISETGRKSRHPVFVVGIFSGQDKLGEGAGASLLEARSRAAVAALK 367


>gi|169763446|ref|XP_001727623.1| 60S ribosomal protein L3 [Aspergillus oryzae RIB40]
 gi|83770651|dbj|BAE60784.1| unnamed protein product [Aspergillus oryzae]
          Length = 403

 Score = 38.4 bits (87), Expect = 0.85,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 3/117 (2%)

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWA 165
                   A  V +++ A+YL  G   A  F ++++  R L             +L    
Sbjct: 251 GVTAEHANATFVRAVMGAIYLHAGRPAAKRFFEQHFLSRHLNISDLFNFSQPARDLSRLC 310

Query: 166 HAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +    P  K+   +G     P F V +        +G   S   A   AA   LK
Sbjct: 311 ARENFEPPVAKIISETGRKSRHPVFVVGIFSGQDKLGEGAGASLLEARSRAAVAALK 367


>gi|170056263|ref|XP_001863951.1| ribonuclease iii [Culex quinquefasciatus]
 gi|167876020|gb|EDS39403.1| ribonuclease iii [Culex quinquefasciatus]
          Length = 239

 Score = 38.4 bits (87), Expect = 0.86,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              +GP +   +T+ V       A     S +  E  AA + L+ 
Sbjct: 135 IECNGPTNTRVYTMAVYF--RLLACCNGHSMQQVEINAAKQALEN 177


>gi|322695413|gb|EFY87222.1| 60S ribosomal protein L3 [Metarhizium acridum CQMa 102]
          Length = 392

 Score = 38.4 bits (87), Expect = 0.88,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 25/71 (35%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L +AL   S   +   +   L FLG  I+   +   L   +       L     +    E
Sbjct: 98  LARALITPSADANGSFNNANLAFLGSTIINYHVLEYLVCKWPRLPMAILYEALRAFSGQE 157

Query: 83  TCSQVARELDL 93
           +  QVAR   +
Sbjct: 158 SLQQVARRWGV 168



 Score = 38.0 bits (86), Expect = 0.89,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 3/110 (2%)

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVT 172
            A  V++++ ++Y   G E A +FV  +   R          +    EL      +   +
Sbjct: 247 FASFVQAVVGSIYAHCGREAAKSFVTSHILSRHFDPSVLFQFQLPTRELAMLCAREGFES 306

Query: 173 PEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P  ++   +G     P + V +        +G   S   A + A+   LK
Sbjct: 307 PVARLESETGRLSRTPVYVVGIYSGKEKLGEGAGPSLDIARRKASMNALK 356


>gi|256074989|ref|XP_002573804.1| tar rna binding protein (trbp) [Schistosoma mansoni]
 gi|238658992|emb|CAZ30036.1| tar rna binding protein (trbp), putative [Schistosoma mansoni]
          Length = 356

 Score = 38.0 bits (86), Expect = 0.89,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           TP Y++    GP H+P +  +   +G   A     SK+ A+  A+  +L + 
Sbjct: 24  TPIYELVSNEGPVHEPLYVFLCT-AGPFSATSKGASKKRAKHQASYLILLKM 74


>gi|21668316|emb|CAC84469.1| putative ribonuclease III [Spodoptera frugiperda ascovirus 1a]
          Length = 348

 Score = 38.0 bits (86), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 7/88 (7%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS-----TLLFNHFDSAKEGELSV 73
           N    + ALT  S  +    +YE  E++GD ++   I           H      G ++ 
Sbjct: 172 NMDKFQAALT--SKEYDNIFNYEYFEYIGDSVINRFIIDYIRENYTDIHNIQQDIGVMTK 229

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSS 101
             +  V     S+    + L  FIR   
Sbjct: 230 LRSIYVGKWNLSKCCVSIGLNKFIRCQY 257


>gi|317030485|ref|XP_001392667.2| 60S ribosomal protein L3 [Aspergillus niger CBS 513.88]
          Length = 406

 Score = 38.0 bits (86), Expect = 0.93,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 1/70 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                  +L      +    P  ++   +G     P F V +        +G   S   A
Sbjct: 301 NFSQPARDLARLCARENFEQPVARIISETGRKSRHPVFVVGIYSGQDKLGEGAGASLLEA 360

Query: 212 EQVAAAEVLK 221
              AA   LK
Sbjct: 361 RSRAAVAALK 370


>gi|290760516|gb|ADD59812.1| dsRNA-specific ribonuclease RNase III [Paulownia witches'-broom
           phytoplasma]
          Length = 112

 Score = 38.0 bits (86), Expect = 0.94,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           +YK+    GP H  +F   V +       G   +K
Sbjct: 45  QYKIVQEQGPAHSKKFVAEVYLEKNLLGTGEGSTK 79


>gi|225714066|gb|ACO12879.1| 39S ribosomal protein L44, mitochondrial precursor [Lepeophtheirus
           salmonis]
          Length = 328

 Score = 38.0 bits (86), Expect = 0.96,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 73/233 (31%), Gaps = 15/233 (6%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSI------------SHSYQESYERLEFLGDRIL 51
           +    L  R+  +F N  L+ +AL   ++                + SY RL  LG  ++
Sbjct: 74  VELFALGARLRESF-NFELVREALRDPTLYLVSMKEKIDLSLKDSEASYTRLVELGREVI 132

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
              ++  L   F       +      L+S    +  A  + L   +  S +      +  
Sbjct: 133 SASLNDFLTKTFPKVPSDGIIAFQEYLMSPYVLASKALHIGLKDLVV-SQEYPPSKNTLS 191

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
            +  A +     +        ++    V        L      ++    L +        
Sbjct: 192 NAFCALIGAHSESGNNRRQSYQLVVDLVATQIIGMDLHDVWKIQNPMDYLSKILAENNMK 251

Query: 172 TPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            PE ++ + SG +     + V +  +     +    S   A  +AA + L+R 
Sbjct: 252 EPEPRLQWASGKNTLLASYHVGIYSNQSLIGECTGESIETARDMAALDTLRRM 304


>gi|158293152|ref|XP_314491.4| AGAP010518-PA [Anopheles gambiae str. PEST]
 gi|157016821|gb|EAA09936.5| AGAP010518-PA [Anopheles gambiae str. PEST]
          Length = 849

 Score = 38.0 bits (86), Expect = 0.98,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 41/177 (23%), Gaps = 25/177 (14%)

Query: 45  FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
           FLG   +  L    L   +      ++  +   +              +   +      +
Sbjct: 662 FLGSTGVNCLSQRELAEGYQPWATRDMMKQSAPVTG-----------GMGMHLLQKMGWQ 710

Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-------------- 150
                      +     L   L   G  E                               
Sbjct: 711 PGEGLGKEKNGSLQPLLLDVKLDKRGLGEGDNKQRSHQPYPMQAPFGRRDARSRFVNLKI 770

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
               +   + L E+A       P Y++   SGP H   F   V ++GL     +  +
Sbjct: 771 NTDGKHPVSILCEYATKHKWNAPMYELVHESGPGHAKNFIFKVLVNGLEYQPAIANN 827


>gi|18043980|gb|AAH19727.1| Mrpl44 protein [Mus musculus]
          Length = 115

 Score = 38.0 bits (86), Expect = 0.98,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 50  PLYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 86


>gi|260950215|ref|XP_002619404.1| hypothetical protein CLUG_00563 [Clavispora lusitaniae ATCC 42720]
 gi|238846976|gb|EEQ36440.1| hypothetical protein CLUG_00563 [Clavispora lusitaniae ATCC 42720]
          Length = 579

 Score = 38.0 bits (86), Expect = 0.99,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 18/215 (8%)

Query: 23  LEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           L+  LT  S          SH       +L   G  ++   + +L    F +A E +L  
Sbjct: 200 LKLVLTDKSFRQPGDFLEASHFSNSHNRKLALHGSALVDCALISLANTAFPTAHEDDLQH 259

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
               L +    +++A   +L+  + +       V   M  +Q      +           
Sbjct: 260 LRFRLTAPHVVARLAYCYNLSEAVMMHISQELPVEDKMRILQTVFYAYVGGMARHGYTFA 319

Query: 134 VAGTFVDKYWKQ--------RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
               ++ K ++         +              L   A+  F    +         + 
Sbjct: 320 EIQKWLSKLYQPLFAKLPDAQVKNLHAVAYAEFQFLVTRANNYFEHPTKKLRYDFEQENE 379

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           DP     + +  LA A G   +  AA+Q AA   L
Sbjct: 380 DPL-VFRLRVGELALASGSGDTALAAKQRAAYNTL 413


>gi|215768941|dbj|BAH01170.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 180

 Score = 38.0 bits (86), Expect = 0.99,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 35/123 (28%), Gaps = 7/123 (5%)

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
           M  +  +     +        + VA   V++        +G    +          +   
Sbjct: 54  MDMVMEEAAALSLGVSASKEPVHVATGRVEQSNCGAKHANGTTDNEPARLRLHKICSATH 113

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-------DCSKRAAEQVAAAEVLKRE 223
                      GP H   FT  V I        +       + SK+AA++ AA   L   
Sbjct: 114 WKEPSYDFEEQGPSHLKLFTCKVTIHVDTFTTTIVECISEPNRSKKAAQEHAAQGALWYL 173

Query: 224 GIW 226
            I+
Sbjct: 174 KIF 176


>gi|71654841|ref|XP_816032.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70881133|gb|EAN94181.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 2180

 Score = 38.0 bits (86), Expect = 0.99,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 35/128 (27%), Gaps = 6/128 (4%)

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
           R       +          +   + +       G+      + +++          R   
Sbjct: 29  RWIHAQEINPGEISLIEAVEESNASVGNASHGSGVFDGSHELPQHFFDAKHVDTFSRARV 88

Query: 158 KTELQEWAHAKFGVTPEYKVT-FRSGPDHDPRFTVVVEIS-----GLAPAQGMDCSKRAA 211
              ++ ++      + +        G D    +   V +      G   A GM C+ + A
Sbjct: 89  VNFIKRFSQGAVTGSNDVFQVQEVKGNDGSQLYHCRVRLPFQSQTGEVWAHGMACNGKDA 148

Query: 212 EQVAAAEV 219
           E +AA   
Sbjct: 149 EMLAAMHA 156


>gi|322822628|gb|EFZ28624.1| hypothetical protein TCSYLVIO_5148 [Trypanosoma cruzi]
          Length = 1905

 Score = 38.0 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 35/128 (27%), Gaps = 6/128 (4%)

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
           R       +          +   + +       G+      + +++          R   
Sbjct: 29  RWIHAQEINPGEISLIEAVEESHASVGNASRGSGVFDGSHELPQHFFDAKHVDTFSRARV 88

Query: 158 KTELQEWAHAKFGVTPEYKVT-FRSGPDHDPRFTVVVEIS-----GLAPAQGMDCSKRAA 211
              ++ ++      + +        G D    +   V +      G   A GM C+ + A
Sbjct: 89  VNFIKRFSQGAVTGSNDVFQVQEVKGNDGSQLYHCRVRLPFQSQTGEVWAHGMACNGKDA 148

Query: 212 EQVAAAEV 219
           E +AA   
Sbjct: 149 EMLAAMHA 156


>gi|255728661|ref|XP_002549256.1| hypothetical protein CTRG_03553 [Candida tropicalis MYA-3404]
 gi|240133572|gb|EER33128.1| hypothetical protein CTRG_03553 [Candida tropicalis MYA-3404]
          Length = 221

 Score = 38.0 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 2   SALRYSTLEKRIG--YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           +      ++  +G  YA  +  +  + +TH S  +  +   E+L  +G ++L L     +
Sbjct: 53  NEENIVNIKNFLGEKYAIPD-EVALQVITHKSFGNGIKPYNEKLHIMGSKLLSLFFVKHV 111

Query: 60  FN 61
            N
Sbjct: 112 TN 113


>gi|167526006|ref|XP_001747337.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774172|gb|EDQ87804.1| predicted protein [Monosiga brevicollis MX1]
          Length = 487

 Score = 38.0 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVL 220
           + +F  V    G   A      ++R AEQ AA   L
Sbjct: 426 NKKFVAVCHWLGEQYATSAGHGNRRYAEQAAALVAL 461


>gi|170587044|ref|XP_001898289.1| Probable ATP-dependent RNA helicase A [Brugia malayi]
 gi|158594684|gb|EDP33268.1| Probable ATP-dependent RNA helicase A, putative [Brugia malayi]
          Length = 1431

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 5/81 (6%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV-----EISGLAPAQ 202
              G +  D           K    P        G D+   F   V     ++     A+
Sbjct: 188 HIHGGWTADNSKMHLNEFVQKIKQPPLRYDIRSIGTDNSRTFVAEVSLFVPKVRCTFSAR 247

Query: 203 GMDCSKRAAEQVAAAEVLKRE 223
               +K+ AE   A  ++++ 
Sbjct: 248 AEGSTKKTAEATCALSLMRQL 268


>gi|119946125|ref|YP_943805.1| ADP-ribosylation/crystallin J1 [Psychromonas ingrahamii 37]
 gi|119864729|gb|ABM04206.1| ADP-ribosylation/Crystallin J1 [Psychromonas ingrahamii 37]
          Length = 1138

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 37/187 (19%), Gaps = 5/187 (2%)

Query: 27  LTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           LTH            +Y RL FLGD I              +  +  +  R    V    
Sbjct: 145 LTHCGYIESEPENAFTYGRLVFLGDLIDNKPDWGGDHLSLLNHIKDLVDKRLAYCVLGNH 204

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
                             D  K        +  + V       +    IE   T      
Sbjct: 205 EFNAIGWSLKKPDGSYCRDRNKSGNRRQHQLFLEQVGEDSRQYHQW--IEWFKTLPLFMD 262

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
                           +                      P+H+        + G   A  
Sbjct: 263 FADVRVIHACWHQESIDRIRPYLNDDNSLKTEYWYDAFDPEHELYQFCETLLKGPEIALP 322

Query: 204 MDCSKRA 210
             CS + 
Sbjct: 323 EGCSFKD 329


>gi|320167293|gb|EFW44192.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 326

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 68/201 (33%), Gaps = 12/201 (5%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L++AL     +  +Q   +R+  LG      L +  +F  F       L     S++ A 
Sbjct: 104 LKRALM---SNDKWQSPSQRMSALGQGYFHALFAEHVFQRFPRLPGPALQSITESVMDAP 160

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
           + SQ AR   L  F +    LR        S    V+ +++    + G  ++      K 
Sbjct: 161 SISQYARAFGLHQFAQSDLLLR--------SSFFAVIAAIVEVKGIAGVRQIVDDVAQKE 212

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPA 201
           +            + +  LQ            +K+   +G     P F V         A
Sbjct: 213 FAAARPADSILITNPQRLLQSCLEDANQEPLTFKLHKEAGRTTATPTFVVGAYSGSQLLA 272

Query: 202 QGMDCSKRAAEQVAAAEVLKR 222
           +G   S   A++ A+   L +
Sbjct: 273 EGTAASMSKAKREASRNSLTK 293


>gi|296806447|ref|XP_002844033.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238845335|gb|EEQ34997.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 156

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 3  ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
                +E  + Y+F ++ L+ +AL+    S +Y    + L  +GD  + L I +     
Sbjct: 13 REDSEAVEGILDYSFKDKCLVLQALSLP-GSSAYSTGNKGLAQVGDAAVRLHIISEGHQR 71


>gi|290974920|ref|XP_002670192.1| predicted protein [Naegleria gruberi]
 gi|284083748|gb|EFC37448.1| predicted protein [Naegleria gruberi]
          Length = 643

 Score = 38.0 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 40/168 (23%)

Query: 44  EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
           E L   I  +    +L  +   +K     ++                  L  +       
Sbjct: 329 EDLSRIITDMTFLFILCGNDYISKPRRFDIKLFMDRYIAHQKYSENREYLIHYDLKQPSE 388

Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
            K    F++S+ +D ++        D     +    +       +               
Sbjct: 389 MKINVKFLSSLYSDYIKDFKQGENEDTETSNSKKKAEMENGFPKINIDNIPTKEAMVFLI 448

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                       +       +  P F VVV+I           SK+ A
Sbjct: 449 TLLNLGKREFLCEEYEIIDAEPKPHFQVVVKIGESYITTARGKSKKDA 496


>gi|328724252|ref|XP_003248081.1| PREDICTED: dosage compensation regulator-like [Acyrthosiphon pisum]
          Length = 190

 Score = 38.0 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAE 212
             + K  L EW               ++G   + RF   V + G      G   +K+ A+
Sbjct: 1   MANPKAFLHEWCAKNNLEPQFE--IKQAGSKFNLRFICEVTVGGHNYVGVGNSTNKKDAQ 58

Query: 213 QVAAAEVL 220
             A+ + L
Sbjct: 59  GNASKDYL 66


>gi|108863923|gb|ABG22336.1| Double-stranded RNA binding motif family protein, expressed [Oryza
           sativa Japonica Group]
          Length = 369

 Score = 38.0 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +I G+        +K+ AE  AA   L
Sbjct: 50  KIGGIQYIGAAARTKKDAEIKAARTAL 76


>gi|260806759|ref|XP_002598251.1| hypothetical protein BRAFLDRAFT_69582 [Branchiostoma floridae]
 gi|229283523|gb|EEN54263.1| hypothetical protein BRAFLDRAFT_69582 [Branchiostoma floridae]
          Length = 758

 Score = 37.6 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 14/37 (37%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P     V I  +  A G   S + A  +AA   L + 
Sbjct: 536 PMHQCFVSIKEMIVADGWSFSAKEARHLAAEAALSKL 572


>gi|121701443|ref|XP_001268986.1| 60S ribosomal protein L3 [Aspergillus clavatus NRRL 1]
 gi|119397129|gb|EAW07560.1| 60S ribosomal protein L3 [Aspergillus clavatus NRRL 1]
          Length = 406

 Score = 37.6 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 1/70 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                  +L      +    P  K+   +G     P F V +        +G   S   A
Sbjct: 301 NFSQPARDLTRLCARENFEPPVAKIISETGRKSRHPVFVVGIFSGQDKLGEGAGASLLEA 360

Query: 212 EQVAAAEVLK 221
              AA   LK
Sbjct: 361 RSRAAVAALK 370


>gi|224111576|ref|XP_002315906.1| predicted protein [Populus trichocarpa]
 gi|222864946|gb|EEF02077.1| predicted protein [Populus trichocarpa]
          Length = 1053

 Score = 37.6 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 186  DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            + +F   VE +G+        +K++AE+ AAAE L+
Sbjct: 990  NNQFRATVEFNGMQIMGQPCNNKKSAEKDAAAEALQ 1025


>gi|302693867|ref|XP_003036612.1| hypothetical protein SCHCODRAFT_30567 [Schizophyllum commune H4-8]
 gi|300110309|gb|EFJ01710.1| hypothetical protein SCHCODRAFT_30567 [Schizophyllum commune H4-8]
          Length = 216

 Score = 37.6 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 61/158 (38%), Gaps = 12/158 (7%)

Query: 16  AFANRSLLEKALTHSSI-----------SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              +  +  +  TH S+           +       E+ E LGD +LGL+++T +   + 
Sbjct: 7   HVHDERIENQIFTHRSLFGRPTHVFEDRADDLAPDNEKFEHLGDTVLGLVVTTQIQQMYP 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             + G  +     +V  +  + ++ +  L          +        ++QAD+ E+ + 
Sbjct: 67  GLRVGPSTKIRALVVGNQNLAAISVKYKLPE-RLKVHAAQVVSLKASVNVQADLFEAYVG 125

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
            L+L  G+ V   ++   ++   + + +  R   T  +
Sbjct: 126 GLFLHRGLSVVEAWLKPLFRPYIICAYEQVRQHHTVTR 163


>gi|256600044|gb|ACV04762.1| Dicer [Patiria miniata]
          Length = 663

 Score = 37.6 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 52/167 (31%), Gaps = 16/167 (9%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
            + + ++LT S  + S   + ERLE LGD  L   ++  L+  +    EG+LS   +  V
Sbjct: 358 PTTILQSLTMS--NSSDGFNLERLEMLGDSFLKQAVTIYLYCTYPRRHEGKLSYMRSKQV 415

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S               F       RKD+   M     D   + +AA +            
Sbjct: 416 SN--------------FNLYRLGKRKDIGRKMQVALFDPAINWLAACFFVKENVHPDEQR 461

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
                Q+                    +     P   V   + PD D
Sbjct: 462 SYQSYQKEGSDVSSDDGDFAIDTWDPSSVDMWDPNMVVEEETAPDID 508


>gi|28574978|ref|NP_647927.3| CG12493 [Drosophila melanogaster]
 gi|19527791|gb|AAL90010.1| AT07585p [Drosophila melanogaster]
 gi|28380451|gb|AAF47937.2| CG12493 [Drosophila melanogaster]
 gi|220949632|gb|ACL87359.1| CG12493-PA [synthetic construct]
 gi|220958430|gb|ACL91758.1| CG12493-PA [synthetic construct]
          Length = 296

 Score = 37.6 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/147 (10%), Positives = 36/147 (24%), Gaps = 3/147 (2%)

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
                C +  RE+       + ++          +I   +    +  L      +     
Sbjct: 143 AGNAACEKALREILTTKMKALLAEPENSSGGDEDNILEKMTSYAVYKLAEKWNSDAIDVA 202

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP--DHDPRFTVVVEIS 196
                 +    S    +  K                       G   ++   F++ V + 
Sbjct: 203 ALYNDVKNKKTSSSVGQLPKLWKNMHPCMVLMQMRPQTTFKFLGSSGENRKVFSMGVSVD 262

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                +    +K+ A +  AA V  + 
Sbjct: 263 NCEF-KADGPTKKDARRKVAALVCNKL 288


>gi|169158555|emb|CAQ13987.1| integrin, beta 5 [Danio rerio]
 gi|169158642|emb|CAQ15345.1| integrin, beta 5 [Danio rerio]
          Length = 807

 Score = 37.6 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/185 (9%), Positives = 31/185 (16%), Gaps = 16/185 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL------VSA 81
           T  S +       +RLE   D       +     +                       + 
Sbjct: 443 TRKSFTIRPVGFKDRLEVSVDYRCDCRCTYHTKPNSSRCNSAGTYNCGLCRCEPGYLGAR 502

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
             C +   +    S  R +   +        S    +              E       +
Sbjct: 503 CECQEGEVDHQHLSACREAEGKQVCSGRGECSCNQCLCYESEFGKIYGTFCECDDFSCAR 562

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
           +         K         +   HA +        T           T           
Sbjct: 563 HKGILCSGKIKSGHGECHCGECKCHAGYIGDNCNCSTE----------TASCVSDDGKIC 612

Query: 202 QGMDC 206
            G   
Sbjct: 613 SGRGS 617


>gi|238881365|gb|EEQ45003.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 673

 Score = 37.6 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  + V+V   G+    G D +K+ A Q AA   L
Sbjct: 626 EKVYHVLVSAKGIYLGGGYDLNKKLAAQKAAMCAL 660


>gi|68477412|ref|XP_717177.1| possible dsRNA binding protein fragment [Candida albicans SC5314]
 gi|46438879|gb|EAK98203.1| possible dsRNA binding protein fragment [Candida albicans SC5314]
          Length = 389

 Score = 37.6 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  + V+V   G+    G D +K+ A Q AA   L
Sbjct: 342 EKVYHVLVSAKGIYLGGGYDLNKKLAAQKAAMCAL 376


>gi|68477257|ref|XP_717255.1| possible dsRNA binding protein [Candida albicans SC5314]
 gi|46438959|gb|EAK98282.1| possible dsRNA binding protein [Candida albicans SC5314]
          Length = 673

 Score = 37.6 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  + V+V   G+    G D +K+ A Q AA   L
Sbjct: 626 EKVYHVLVSAKGIYLGGGYDLNKKLAAQKAAMCAL 660


>gi|47226202|emb|CAG08349.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 237

 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH  R+   V + G   A G+   K+  + +AA E L   
Sbjct: 20  PDH--RWRCEVYLEGQYVAAGIGP-KKLVKHIAANEALATL 57


>gi|17555186|ref|NP_499265.1| RNAi DEfective family member (rde-4) [Caenorhabditis elegans]
 gi|458490|emb|CAA83012.1| C. elegans protein T20G5.11, confirmed by transcript evidence
           [Caenorhabditis elegans]
 gi|21912830|gb|AAL61544.1| RNA interference promoting factor [Caenorhabditis elegans]
          Length = 385

 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           F + + ++ +   +G   SK+AA Q AA E L++
Sbjct: 71  FEMTLILNEITV-KGQATSKKAARQKAAVEYLRK 103


>gi|332017832|gb|EGI58492.1| NF-kappa-B-repressing factor [Acromyrmex echinatior]
          Length = 379

 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/82 (9%), Positives = 20/82 (24%)

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            ++    +         T        +                 +  +   +       +
Sbjct: 106 NFQNHPYEDIVLWEKPGTNDNVLNILEMSAGVSGIAMRWKYSKIEEGWECSIIFDSQKLS 165

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
              D +K+ A Q AA   L++ 
Sbjct: 166 CSTDINKKVARQKAAIIALEKL 187


>gi|326913278|ref|XP_003202966.1| PREDICTED: hypothetical protein LOC100542052 [Meleagris gallopavo]
          Length = 847

 Score = 37.6 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           +   + L E  + +    PE+ +   SGPDH   F   V ++G   
Sbjct: 758 KHPVSALMEICNKRRWSPPEFVLVDDSGPDHRKHFIFKVRVNGNEY 803


>gi|296425163|ref|XP_002842112.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638371|emb|CAZ86303.1| unnamed protein product [Tuber melanosporum]
          Length = 302

 Score = 37.6 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           +A+TH S  H +Q   E+L   G R+  L  S  L N      +     
Sbjct: 135 QAVTHKSFDHGHQPFNEKLAIYGKRVCWLHASLHLLNGPPIEDKRVYEP 183


>gi|195447464|ref|XP_002071225.1| GK25242 [Drosophila willistoni]
 gi|194167310|gb|EDW82211.1| GK25242 [Drosophila willistoni]
          Length = 412

 Score = 37.2 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           D  FT +V ++     +G   SK AA+ +A  + L+
Sbjct: 167 DGGFTAIVTVNSNQY-EGKGQSKMAAKNLACEKALR 201


>gi|50251545|dbj|BAD28919.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|50253009|dbj|BAD29259.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|125605702|gb|EAZ44738.1| hypothetical protein OsJ_29369 [Oryza sativa Japonica Group]
          Length = 122

 Score = 37.2 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGM-------DCSKRAAEQVAAAEVLKREGIW 226
                 GP H   FT  V I        +       + SK+AA++ AA   L    I+
Sbjct: 61  YDFEEQGPSHLKLFTCKVTIHVDTFTTTIVECISEPNRSKKAAQEHAAQGALWYLKIF 118


>gi|121711916|ref|XP_001273573.1| RNAse III, putative [Aspergillus clavatus NRRL 1]
 gi|119401725|gb|EAW12147.1| RNAse III, putative [Aspergillus clavatus NRRL 1]
          Length = 160

 Score = 37.2 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHS-S---ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +E+ IGY FA+R++L++AL    S      + +   + L  +GD +L   +  +L  +  
Sbjct: 15  VEETIGYKFADRAVLKEALLAPGSVPLAITTERTGNKDLAQIGDAVLR--LILILDGYIA 72

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
            A   +++   + +VS    +    ++ L   I  +   +
Sbjct: 73  KADRAKINDVVSPMVSNPNLAAKGFKVGLEQHILANPSQQ 112


>gi|327357524|gb|EGE86381.1| 60S ribosomal protein L3 [Ajellomyces dermatitidis ATCC 18188]
          Length = 394

 Score = 37.2 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 3/120 (2%)

Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQ 162
                      A+ V +++ A+YL  G   A  F  +++  R L        R    +L 
Sbjct: 239 HHEGVTPNRACANFVRAIVGAVYLHAGRPAAKQFYKEHFTSRHLDMASLFSFRQPTRDLS 298

Query: 163 EWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +    +    P  K+   +G   + P F V +        +G   S   A   AAA  LK
Sbjct: 299 KLCRREGFEDPVAKILSETGRLSNRPVFNVGIFSGPDKLGEGAGGSLSEARFRAAASALK 358


>gi|218202148|gb|EEC84575.1| hypothetical protein OsI_31370 [Oryza sativa Indica Group]
          Length = 180

 Score = 37.2 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 7/58 (12%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGM-------DCSKRAAEQVAAAEVLKREGIW 226
                 GP H   FT  V I        +         SK+AA++ AA   L    I+
Sbjct: 119 YDFEEQGPSHLKLFTCKVTIHVDTFTTTIVECISEPKRSKKAAQEHAAQGALWYLKIF 176


>gi|308162643|gb|EFO65028.1| Dicer [Giardia lamblia P15]
          Length = 754

 Score = 37.2 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 48/158 (30%), Gaps = 1/158 (0%)

Query: 32  ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
              S+   ++RLE LGD +LG +++  L   F +A  G L      LV  ET + + + L
Sbjct: 324 FGVSHTNVFQRLELLGDAVLGFVVTARLLCLFPNASVGTLVDLKMELVRNETLNYLVQML 383

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
            L       S            +  ++V S+        G E          +       
Sbjct: 384 RLPQLA-EFSGTLMAKSKTWADMYEELVGSVFTGPNGIYGCEEFLAKTLISPEHSKPIES 442

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
                    L+     +  V     +   +       F
Sbjct: 443 ACPDAIIRALERICTGEAEVHEFKSIVDYAYEQGIRVF 480



 Score = 37.2 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 10/114 (8%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             LL+ ALT           Y++LE LGD  L   ++  L     +  EG L+    S  
Sbjct: 633 IQLLQLALT--------PHVYQKLELLGDAFLKCNLAFHLHVLHPTLTEGTLTRMRQSAE 684

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           +     ++ R         ++           + +  D  E+++AA+ L  G E
Sbjct: 685 TNCVLGKLIRRFPSIVDKVITES--HPKIQSDSKVYGDTFEAILAAVLLACGEE 736


>gi|261330250|emb|CBH13234.1| T. brucei spp.-specific protein [Trypanosoma brucei gambiense
           DAL972]
          Length = 1648

 Score = 37.2 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +++LL+ A T        +++YE LEF+GD I+  ++ +  F   +   +   +    + 
Sbjct: 715 DKTLLKWATTRE--CEDKEQNYEILEFIGDAIMDFIVVSDSFLLGEPWHKDVNTKLCCNE 772

Query: 79  V 79
           V
Sbjct: 773 V 773


>gi|170043311|ref|XP_001849336.1| ribonuclease iii [Culex quinquefasciatus]
 gi|167866692|gb|EDS30075.1| ribonuclease iii [Culex quinquefasciatus]
          Length = 172

 Score = 37.2 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 14/45 (31%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              + P       +     G   A     S + AE  AA + L+ 
Sbjct: 70  IECNSPTSTRVCMMADYFRGKRLACSNGHSTQQAEMNAAKQALEN 114


>gi|72392539|ref|XP_847070.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62175606|gb|AAX69739.1| hypothetical protein Tb927.8.2370 [Trypanosoma brucei]
 gi|70803100|gb|AAZ13004.1| hypothetical protein Tb927.8.2370 [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 1648

 Score = 37.2 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +++LL+ A T        +++YE LEF+GD I+  ++ +  F   +   +   +    + 
Sbjct: 715 DKTLLKWATTRE--CEDKEQNYEILEFIGDAIMDFIVVSDSFLLGEPWHKDVNTKLCCNE 772

Query: 79  V 79
           V
Sbjct: 773 V 773


>gi|300863100|ref|NP_001025431.2| 39S ribosomal protein L44, mitochondrial [Danio rerio]
          Length = 332

 Score = 37.2 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P + V +       AQG   +   AE+ AA   L++ 
Sbjct: 266 PLYFVGLYSDRKLLAQGPGETVLIAEEEAARVALRKL 302


>gi|195435716|ref|XP_002065825.1| GK18578 [Drosophila willistoni]
 gi|194161910|gb|EDW76811.1| GK18578 [Drosophila willistoni]
          Length = 248

 Score = 37.2 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              RD   EL ++  +     P +++  ++   + P+F     ++ +    G+   K+ A
Sbjct: 32  DPNRDMFKELCDFCKSHDMPYPVFEMVEQNRNPNAPKFVACCTLASIKR-YGISDKKKEA 90

Query: 212 EQVAAAEVL 220
            Q AA+ +L
Sbjct: 91  HQKAASAIL 99


>gi|126631560|gb|AAI33991.1| Zgc:114114 protein [Danio rerio]
          Length = 332

 Score = 37.2 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P + V +       AQG   +   AE+ AA   L++ 
Sbjct: 266 PLYFVGLYSDRKLLAQGPGETVLIAEEEAARVALRKL 302


>gi|66911375|gb|AAH97173.1| Zgc:114114 [Danio rerio]
          Length = 155

 Score = 37.2 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P + V +       AQG   +   AE+ AA   L++ 
Sbjct: 89  PLYFVGLYSDRKLLAQGPGETVLIAEEEAARVALRKL 125


>gi|241068889|ref|XP_002408520.1| Nkrf protein, putative [Ixodes scapularis]
 gi|215492506|gb|EEC02147.1| Nkrf protein, putative [Ixodes scapularis]
          Length = 379

 Score = 37.2 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 12/28 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           F   V +        +  SK+ A++ AA
Sbjct: 167 FRCTVVLGQCEIGVALGTSKQEAKEAAA 194


>gi|258571013|ref|XP_002544310.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237904580|gb|EEP78981.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 266

 Score = 37.2 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           +A+TH S     +   +RL +LG   + L  +  L  +  S  + 
Sbjct: 116 QAVTHKSFDQGRRGFNDRLAYLGKHAVALQATLALMQNPASHSQK 160


>gi|255937045|ref|XP_002559549.1| Pc13g11310 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211584169|emb|CAP92200.1| Pc13g11310 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 372

 Score = 37.2 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 73/236 (30%), Gaps = 32/236 (13%)

Query: 3   ALRYSTLEKRIGYAFAN--RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           + + + L  R+ Y  +      L + L  +S   +   +   L   G  +L    +  L 
Sbjct: 88  SAKLAALHARL-YLPSRLPIETLARTLVDTSADPNPNFNNASLATFGHDLLSYYATEHLI 146

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---- 116
             +       +     + V  +T + +ARE           + +K+    +TS       
Sbjct: 147 CTYPRLPLTVIFAAMYAYVGPKTLAAMAREWGPTHPTARPYETQKNWRKTVTSKIFYDDE 206

Query: 117 ----------------------DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154
                                 + V +++ A+YL  G   A  F ++++  R L   +  
Sbjct: 207 FGDPLKGAKHSAAGVTTEQASAEFVRAVMGAIYLHAGRAAAKRFFEQHFLSRHLNISELF 266

Query: 155 RD--AKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCS 207
                  +L      +    P  KV   +G     P F V +        +G   S
Sbjct: 267 NFQAPARDLTRLCARESFERPVAKVISETGRKSRHPVFVVGIFSGQDKLGEGAGAS 322


>gi|115530718|emb|CAL49304.1| novel protein similar to staufen [Xenopus (Silurana) tropicalis]
          Length = 351

 Score = 37.2 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            ++  ++VT  +GP H   F   V + G    +G   S
Sbjct: 315 NMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGEGEGKS 351


>gi|292611918|ref|XP_002661255.1| PREDICTED: hypothetical protein LOC100332647 [Danio rerio]
          Length = 923

 Score = 37.2 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/140 (7%), Positives = 29/140 (20%), Gaps = 3/140 (2%)

Query: 50  ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
           I     +        + ++       +                  ++ R   D +    +
Sbjct: 290 IYDYTSNCYYTTLNYTREQYNRKQCNSKRHHTTHDHTNTCYYTTQNYSREQYDSKCYHTT 349

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
              + +    +      Y       +  +   +         K          E  ++K+
Sbjct: 350 HQYNNEQCHSKCYHTTHYYTREQHNSKCYYTTHNYTLEQYHCKCNYTPLYFTSEQFNSKY 409

Query: 170 GVTPEYKVTFRSGPDHDPRF 189
             T          P H   F
Sbjct: 410 YHTTHNHTRE---PYHSKCF 426


>gi|222112971|emb|CAP72541.1| disco-interacting protein [Drosophila virilis]
          Length = 320

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           D  FT +V ++     +G   SK AA+ +A  + L+
Sbjct: 101 DGGFTAIVTVNTRQY-EGKGQSKMAAKNLACEKALR 135


>gi|222112969|emb|CAP72540.1| disco-interacting protein [Drosophila virilis]
          Length = 385

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           D  FT +V ++     +G   SK AA+ +A  + L+
Sbjct: 166 DGGFTAIVTVNTRQY-EGKGQSKMAAKNLACEKALR 200


>gi|195392816|ref|XP_002055050.1| GJ19010 [Drosophila virilis]
 gi|194149560|gb|EDW65251.1| GJ19010 [Drosophila virilis]
          Length = 375

 Score = 37.2 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           D  FT +V ++     +G   SK AA+ +A  + L+
Sbjct: 166 DGGFTAIVTVNTRQY-EGKGQSKMAAKNLACEKALR 200


>gi|260946561|ref|XP_002617578.1| hypothetical protein CLUG_03022 [Clavispora lusitaniae ATCC 42720]
 gi|238849432|gb|EEQ38896.1| hypothetical protein CLUG_03022 [Clavispora lusitaniae ATCC 42720]
          Length = 211

 Score = 36.8 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 20/36 (55%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
            + LTH S ++  +   E+L  +G ++L L ++  +
Sbjct: 66  LQVLTHKSFANGIKPYNEKLSAMGAKVLNLFLAKHV 101


>gi|259488709|tpe|CBF88369.1| TPA: 60S ribosomal protein L3 (AFU_orthologue; AFUA_1G12730)
           [Aspergillus nidulans FGSC A4]
          Length = 406

 Score = 36.8 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 1/70 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                  +L +    +    P  K+   +G     P F V +        +G   S   A
Sbjct: 301 NFSLPTRDLAQLCARENYEPPVAKIISETGRRSRHPVFVVGIFSGQDKLGEGAGASLPEA 360

Query: 212 EQVAAAEVLK 221
              AA   LK
Sbjct: 361 RSRAAVAALK 370


>gi|67517561|ref|XP_658601.1| hypothetical protein AN0997.2 [Aspergillus nidulans FGSC A4]
 gi|40746409|gb|EAA65565.1| hypothetical protein AN0997.2 [Aspergillus nidulans FGSC A4]
          Length = 464

 Score = 36.8 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 1/70 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                  +L +    +    P  K+   +G     P F V +        +G   S   A
Sbjct: 359 NFSLPTRDLAQLCARENYEPPVAKIISETGRRSRHPVFVVGIFSGQDKLGEGAGASLPEA 418

Query: 212 EQVAAAEVLK 221
              AA   LK
Sbjct: 419 RSRAAVAALK 428


>gi|322495128|emb|CBZ30432.1| conserved hypothetical protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 2231

 Score = 36.8 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 182  GPDHDPRFTVVVEISGLAP--AQGMDCSKRAAEQVAAAEVL 220
            GP H       V + G      +G+  +K  A++ AA   L
Sbjct: 995  GPIHHRLTYATVPLPGFDYLLGRGVGPNKVVAKRRAAMHAL 1035


>gi|146099498|ref|XP_001468659.1| hypothetical protein [Leishmania infantum]
 gi|134073027|emb|CAM71746.1| RNA editing associated helicase 2,putative;with=GeneDB:Tb927.4.1500
            [Leishmania infantum JPCM5]
          Length = 2548

 Score = 36.8 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 182  GPDHDPRFTVVVEISGLAP--AQGMDCSKRAAEQVAAAEVL 220
            GP H       V + G      +G+  +K  A++ AA   L
Sbjct: 1311 GPIHHRLTYATVPLPGFDYLLGRGVGPNKVVAKRRAAMHAL 1351


>gi|62421274|gb|AAX82394.1| ribonuclease III [Orange-spotted grouper iridovirus]
          Length = 265

 Score = 36.8 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 55/227 (24%), Gaps = 31/227 (13%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE------- 70
            N  +     THS        +YE  E LGD I+  ++       F              
Sbjct: 37  KNTQVFHSVFTHS--KAHPVNNYEWYEKLGDAIIASVMPQYYMERFPKLAHDPSAAVART 94

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIA----- 124
           +S    +  S  T S +A+++    ++                 +  D  E+++      
Sbjct: 95  VSQLAITYQSGTTMSTIAQKMGFLKWVVAHRDGAAPASYKEQQRLLEDTFEAMVGAISIT 154

Query: 125 --------ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
                                       +            +      +           
Sbjct: 155 MDDATGVKCSGHIACYRFLKYAYGLINMRLDGLIDNKSMLKELIDMHSSVLDSFTFEYTN 214

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                   H       V ++ L        SKR  E+V A +VL + 
Sbjct: 215 NVMTLTVAHGKYMVSEVNVNNL--------SKRELEKVLAGKVLAQL 253


>gi|124808931|ref|XP_001348445.1| transcription factor with AP2 domain(s), putative [Plasmodium
           falciparum 3D7]
 gi|23497339|gb|AAN36884.1| transcription factor with AP2 domain(s), putative [Plasmodium
           falciparum 3D7]
          Length = 1186

 Score = 36.8 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 7/154 (4%), Positives = 21/154 (13%), Gaps = 4/154 (2%)

Query: 30  SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
            S       +  + +F G                D         +F           + +
Sbjct: 599 RSYCKE---NNCKKDFYGKNTYRNSFCMNNKCMNDICLGENCENQFCMNKCCMNRCCMNK 655

Query: 90  ELDLASFIRVSSDLRKDVCSFMT-SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
                  +      +     +       D               +               
Sbjct: 656 YCMNKYCMNKYCMDKYCTNKYCMNKYCMDKYCMDKYCTNKYCTNKYCMDKYCTNKYCMDY 715

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
                       +            +  +   +G
Sbjct: 716 CCMNNVCMHNNCMLHNYVRNNCSCIKNTMNDMNG 749


>gi|321466229|gb|EFX77226.1| hypothetical protein DAPPUDRAFT_321627 [Daphnia pulex]
          Length = 199

 Score = 36.8 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 1/96 (1%)

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
               +E     + +       +  +       E+      K  + P Y      G     
Sbjct: 98  CCEWMEHYSPLLIEDMMVVDSQPREDVGYNYCEVLHRLLRKKHLAPIYYCLQVEGTGPSL 157

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            F +           G   + R A+ VAA E+L + 
Sbjct: 158 TFAMSCHHP-KFVTIGEGRTIRMAKNVAAQEMLMKL 192


>gi|312219307|emb|CBX99251.1| hypothetical protein [Leptosphaeria maculans]
          Length = 425

 Score = 36.8 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 1/68 (1%)

Query: 2   SALRYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           S+ +   L  R+         +L + L H S       +   L  LG  +LG   S  L 
Sbjct: 112 SSTKLHALRSRLSLPPRFPLQVLARTLVHPSADPDPAFNNASLSILGRHLLGYYTSEWLL 171

Query: 61  NHFDSAKE 68
            ++     
Sbjct: 172 CNYPRLPM 179


>gi|312385229|gb|EFR29781.1| hypothetical protein AND_01016 [Anopheles darlingi]
          Length = 158

 Score = 36.8 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPA--QGMDCSKRAAEQVAAAEVLKREGIWT 227
              E          H  ++  +V++S +  A   G   + R A+ +AA   L+   I T
Sbjct: 98  QRFEVTYVDIDEKTHSGQYQCLVQLSTMPVAVCHGTGPTVRDAQLLAARNSLEYLKIMT 156


>gi|224159933|ref|XP_002338148.1| predicted protein [Populus trichocarpa]
 gi|222871054|gb|EEF08185.1| predicted protein [Populus trichocarpa]
          Length = 83

 Score = 36.8 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219
            G +H P F   V +     +  +   S + A+  AA + 
Sbjct: 25  EGQEHSPLFYATVTVDATLFSTPLPSSSSKEAQNAAAKQA 64


>gi|195113551|ref|XP_002001331.1| GI22032 [Drosophila mojavensis]
 gi|193917925|gb|EDW16792.1| GI22032 [Drosophila mojavensis]
          Length = 449

 Score = 36.8 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           T  + I+    A G   + +AA+  A  + L
Sbjct: 215 TAEIVINDEVIATGQGDNLKAAKVAAYKQAL 245


>gi|296087343|emb|CBI33717.3| unnamed protein product [Vitis vinifera]
          Length = 286

 Score = 36.8 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 18  ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S       +  YERLE++G +I  ++++  L      A    L 
Sbjct: 140 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQ 199

Query: 73  VRFNSLVSAETCSQVARELDLASFIRV 99
            +   L+  + C +  R+  L  FI  
Sbjct: 200 EKHRRLLMNKFCGRYLRDKYLHRFIIY 226


>gi|259150175|emb|CAY86978.1| EC1118_1P2_3378p [Saccharomyces cerevisiae EC1118]
          Length = 1134

 Score = 36.8 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 50/195 (25%), Gaps = 9/195 (4%)

Query: 18  ANRSLLEKAL--THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
              ++L  AL  T +S   S     E  E + D I G L   +  +           ++ 
Sbjct: 530 KQPAILNLALIMTGASFLGS-----EYREQISDPICGPLRWIIFSHADFQPPSKTYIIQS 584

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
             LV     +   R L   SF+         +     S+    +         +  I+  
Sbjct: 585 LLLVEGYEKTSTNRYLHERSFL--HHGTTIQLLRRTPSLGGHPLMVKTGKTSGENSIQDP 642

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
                ++     LK   F               + +         + P  D  +      
Sbjct: 643 QEVYKRWIDFEMLKRIAFYAFYMDTTHAVVFGYWNLFINSNQIQLTLPCPDQVWESYDLS 702

Query: 196 SGLAPAQGMDCSKRA 210
                  G   +KR 
Sbjct: 703 YETLMEHGYGSTKRD 717


>gi|190407966|gb|EDV11231.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
          Length = 1134

 Score = 36.8 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 50/195 (25%), Gaps = 9/195 (4%)

Query: 18  ANRSLLEKAL--THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
              ++L  AL  T +S   S     E  E + D I G L   +  +           ++ 
Sbjct: 530 KQPAILNLALIMTGASFLGS-----EYREQISDPICGPLRWIIFSHADFQPPSKTYIIQS 584

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
             LV     +   R L   SF+         +     S+    +         +  I+  
Sbjct: 585 LLLVEGYEKTSTNRYLHERSFL--HHGTTIQLLRRTPSLGGHPLMVKTGKTSGENSIQDP 642

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
                ++     LK   F               + +         + P  D  +      
Sbjct: 643 QEVYKRWIDFEMLKRIAFYAFYMDTTHAVVFGYWNLFINSNQIQLTLPCPDQVWESYDLS 702

Query: 196 SGLAPAQGMDCSKRA 210
                  G   +KR 
Sbjct: 703 YETLMEHGYGSTKRD 717


>gi|6325279|ref|NP_015347.1| hypothetical protein YPR022C [Saccharomyces cerevisiae S288c]
 gi|74676534|sp|Q12139|YP022_YEAST RecName: Full=Zinc finger protein YPR022C
 gi|809587|emb|CAA89276.1| unknown [Saccharomyces cerevisiae]
 gi|1314096|emb|CAA95018.1| unknown [Saccharomyces cerevisiae]
 gi|285815556|tpg|DAA11448.1| TPA: hypothetical protein YPR022C [Saccharomyces cerevisiae S288c]
          Length = 1133

 Score = 36.8 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 50/195 (25%), Gaps = 9/195 (4%)

Query: 18  ANRSLLEKAL--THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
              ++L  AL  T +S   S     E  E + D I G L   +  +           ++ 
Sbjct: 529 KQPAILNLALIMTGASFLGS-----EYREQISDPICGPLRWIIFSHADFQPPSKTYIIQS 583

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
             LV     +   R L   SF+         +     S+    +         +  I+  
Sbjct: 584 LLLVEGYEKTSTNRYLHERSFL--HHGTTIQLLRRTPSLGGHPLMVKTGKTSGENSIQDP 641

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
                ++     LK   F               + +         + P  D  +      
Sbjct: 642 QEVYKRWIDFEMLKRIAFYAFYMDTTHAVVFGYWNLFINSNQIQLTLPCPDQVWESYDLS 701

Query: 196 SGLAPAQGMDCSKRA 210
                  G   +KR 
Sbjct: 702 YETLMEHGYGSTKRD 716


>gi|151942811|gb|EDN61157.1| conserved protein [Saccharomyces cerevisiae YJM789]
          Length = 1133

 Score = 36.8 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 50/195 (25%), Gaps = 9/195 (4%)

Query: 18  ANRSLLEKAL--THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
              ++L  AL  T +S   S     E  E + D I G L   +  +           ++ 
Sbjct: 529 KQPAILNLALIMTGASFLGS-----EYREQISDPICGPLRWIIFSHADFQPPSKTYIIQS 583

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
             LV     +   R L   SF+         +     S+    +         +  I+  
Sbjct: 584 LLLVEGYEKTSTNRYLHERSFL--HHGTTIQLLRRTPSLGGHPLMVKTGKTSGENSIQDP 641

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
                ++     LK   F               + +         + P  D  +      
Sbjct: 642 QEVYKRWIDFEMLKRIAFYAFYMDTTHAVVFGYWNLFINSNQIQLTLPCPDQVWESYDLS 701

Query: 196 SGLAPAQGMDCSKRA 210
                  G   +KR 
Sbjct: 702 YETLMEHGYGSTKRD 716


>gi|256271983|gb|EEU07000.1| YPR022C-like protein [Saccharomyces cerevisiae JAY291]
          Length = 1134

 Score = 36.8 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 50/195 (25%), Gaps = 9/195 (4%)

Query: 18  ANRSLLEKAL--THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
              ++L  AL  T +S   S     E  E + D I G L   +  +           ++ 
Sbjct: 530 KQPAILNLALIMTGASFLGS-----EYREQISDPICGPLRWIIFSHADFQPPSKTYIIQS 584

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
             LV     +   R L   SF+         +     S+    +         +  I+  
Sbjct: 585 LLLVEGYEKTSTNRYLHERSFL--HHGTTIQLLRRTPSLGGHPLMVKTGKTSGENSIQDP 642

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
                ++     LK   F               + +         + P  D  +      
Sbjct: 643 QEVYKRWIDFEMLKRIAFYAFYMDTTHAVVFGYWNLFINSNQIQLTLPCPDQVWESYDLS 702

Query: 196 SGLAPAQGMDCSKRA 210
                  G   +KR 
Sbjct: 703 YETLMEHGYGSTKRD 717


>gi|148232118|ref|NP_001089022.1| ATP-binding cassette, sub-family A (ABC1), member 4 [Xenopus laevis]
 gi|38683260|gb|AAR26655.1| retinal ABCA4 transporter [Xenopus laevis]
          Length = 2363

 Score = 36.8 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 4/67 (5%)

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG--MDCSKRAAEQVAAAE 218
            +              + +    P H+  F   + +             SK+ AE+     
Sbjct: 1055 VWIRGRDIQTHMDSIRQSLGMCPQHNVLFR-HLTVEEHILFYAQLKGKSKKQAERQV-EV 1112

Query: 219  VLKREGI 225
            +L+  GI
Sbjct: 1113 MLEDIGI 1119


>gi|164658275|ref|XP_001730263.1| hypothetical protein MGL_2645 [Malassezia globosa CBS 7966]
 gi|159104158|gb|EDP43049.1| hypothetical protein MGL_2645 [Malassezia globosa CBS 7966]
          Length = 294

 Score = 36.8 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +L+  ALTH S  H  Q    RL F+G R L   +S   F
Sbjct: 117 TLVSHALTHESWMHGMQGHNRRLAFIGRRALKTYLSLFFF 156


>gi|85108136|ref|XP_962512.1| hypothetical protein NCU08299 [Neurospora crassa OR74A]
 gi|28924120|gb|EAA33276.1| hypothetical protein NCU08299 [Neurospora crassa OR74A]
          Length = 439

 Score = 36.8 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 36/107 (33%), Gaps = 3/107 (2%)

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD--AKTELQEWAHAKFGVTPEY 175
            V +++ A+Y   G E A  FV  +   R L   K         EL      +    P  
Sbjct: 295 FVRAVVGAIYAHCGREAAKAFVKAHIMSRTLDIAKLFEFKYPTRELAALCAREDFEPPVA 354

Query: 176 KVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           ++   +G     P F V +        +G   S   A   AA   LK
Sbjct: 355 RLLSETGRQSRTPVFVVGIYSGSDKLGEGAASSLDHARFKAAMNALK 401


>gi|154336651|ref|XP_001564561.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134061596|emb|CAM38627.1| RNA editing associated helicase 2,putative;with=GeneDB:Tb927.4.1500
            [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 2250

 Score = 36.8 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 182  GPDHDPRFTVVVEISGLAP--AQGMDCSKRAAEQVAAAEVL 220
            GP H       + + G      +G+  +K  A++ AA   L
Sbjct: 1013 GPMHHRITYATIPLPGFEYLLGRGVGHNKVVAQRRAAMHAL 1053


>gi|221058875|ref|XP_002260083.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
            knowlesi strain H]
 gi|193810156|emb|CAQ41350.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
            knowlesi strain H]
          Length = 1945

 Score = 36.4 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/141 (7%), Positives = 37/141 (26%), Gaps = 2/141 (1%)

Query: 51   LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
            +  +  T +     +          N +   E  +    +++      ++     DV + 
Sbjct: 1630 MNPMHHTEMNPMHHTDVNPMHHTDVNPMHHTEVNTMHHTDMNQMHHTEMNPMHHTDVNTM 1689

Query: 111  MTSIQADVVESLIAALYLD--GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
              +    +  + +  ++      +         +     +   +      T++    H  
Sbjct: 1690 HHTEMNPMHHTDVNTMHHTDMNPMHHTEMNPMHHTDVNTMHHTEMNPMHHTDMNPMRHTD 1749

Query: 169  FGVTPEYKVTFRSGPDHDPRF 189
                     T  + P+H   F
Sbjct: 1750 MNPMRNVTATQNAEPEHPRNF 1770


>gi|145234665|ref|XP_001389981.1| RNAse III [Aspergillus niger CBS 513.88]
 gi|134057653|emb|CAK38052.1| unnamed protein product [Aspergillus niger]
          Length = 154

 Score = 36.4 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 7  STLEKRIGYAFANRSLLEKAL----THSSISHSYQESYERLEFLGDRILGL 53
           TL+  IGY F + +   +AL     H     +  + +++L  +GD +L +
Sbjct: 12 QTLQSLIGYIFNDPNRAMEALVAAGVHMPGLINRTDGHKQLALVGDAVLRM 62


>gi|50237565|gb|AAT71898.1| dsRNA-specific ribonuclease [Rock bream iridovirus]
          Length = 265

 Score = 36.4 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 56/227 (24%), Gaps = 31/227 (13%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE------- 70
            N  +     THS        +YE  E LGD I+  ++       F              
Sbjct: 37  KNTQVFHSVFTHS--KAHPVNNYEWYEKLGDAIIASVMPQYYMERFPKLAHDPSATVART 94

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIA----- 124
           +S    +  S  T S +A+++    ++      +          +  D  E+++      
Sbjct: 95  VSQLAITYQSGTTMSTIAQKMGFLKWVVAHRDGVAPASYKEQQRLLEDTFEAMVGAISIT 154

Query: 125 --------ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
                                       +            +      +           
Sbjct: 155 MDDATGVKCSGHIACYRFLKYAYGLINMRLDGLIDNKSMLKELIDMHSSVLDSFTFEYTN 214

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                   H       V ++ L        SKR  E+V A +VL + 
Sbjct: 215 NVMTLTVAHGKYTVSEVNVNNL--------SKRELEKVLAGKVLAQL 253


>gi|301621748|ref|XP_002940207.1| PREDICTED: mucin-2-like [Xenopus (Silurana) tropicalis]
          Length = 1197

 Score = 36.4 bits (82), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/155 (7%), Positives = 34/155 (21%), Gaps = 7/155 (4%)

Query: 52   GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
                            + +    +++ V+         + +       +           
Sbjct: 1017 KKCDIITNNVFARCHSKVDPKPFYDACVNDVCSCDTGGDCECFCTAVAAYAQLCAKADVC 1076

Query: 112  TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKF 169
               +   +  +    Y     E    +     + R++          + T L+       
Sbjct: 1077 IHWRTPEICPIFCDYYNTNENECMWHYFACGPEDRSIHHITKYCHSPSVTHLEGCYPTCP 1136

Query: 170  GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
               P Y    +S   H         I+ +  + G 
Sbjct: 1137 TERPYYDEINKSCVSH-----CSCIINNITYSIGQ 1166


>gi|284054885|ref|ZP_06385095.1| ribonuclease III [Arthrospira platensis str. Paraca]
          Length = 131

 Score = 36.4 bits (82), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 33/95 (34%)

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
             + V + +        +           +   + +   R++ K  LQEW  + + + P+
Sbjct: 13  CFEAVLAALYLSTNTLELIRPWLDPHLLERATEIFNDPARQNYKAALQEWTQSCYKILPQ 72

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           YKV        + RFT  V +       G   + +
Sbjct: 73  YKVNETGYAGDEGRFTASVWLRDEQLGTGTGKTIK 107


>gi|301626584|ref|XP_002942470.1| PREDICTED: mucin-2-like, partial [Xenopus (Silurana) tropicalis]
          Length = 1401

 Score = 36.4 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/156 (7%), Positives = 34/156 (21%), Gaps = 7/156 (4%)

Query: 52   GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
                            + +    +++ V+         + +       +           
Sbjct: 1029 KKCDIITNNVFARCHSKVDPKPFYDACVNDVCSCDTGGDCECFCTAVAAYAQLCAKADVC 1088

Query: 112  TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKF 169
               +   +  +    Y     E    +     + R++          + T L+       
Sbjct: 1089 IHWRTPEICPIFCDYYNTNENECMWHYFACGPEDRSIHHITKYCHSPSVTHLEGCYPTCP 1148

Query: 170  GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
               P Y    +S   H         I+ +  + G  
Sbjct: 1149 TERPYYDEINKSCVSH-----CSCIINNITYSIGQH 1179


>gi|291227541|ref|XP_002733742.1| PREDICTED: fn3_vwb domain protein-like [Saccoglossus kowalevskii]
          Length = 398

 Score = 36.4 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/147 (10%), Positives = 29/147 (19%), Gaps = 2/147 (1%)

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV--C 108
                 T   N     +           +    C       D                 C
Sbjct: 128 CNGCGGTCKRNGCSKNEVPFTGKVCKCPIGETCCLNNGCAKDYPGRGICRPSDDDLNEQC 187

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
                  +                +  G   D ++      S +F      +L +    K
Sbjct: 188 RNNEKAISMGPCENNCWCCKRKRKKQNGESGDPHFTTFDGLSYEFHGPCTYKLFQDCTDK 247

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEI 195
                  +     GP H+  +  VV +
Sbjct: 248 PRFAVHTEHISALGPGHNKTYVYVVWV 274


>gi|253741929|gb|EES98787.1| Dicer [Giardia intestinalis ATCC 50581]
          Length = 750

 Score = 36.4 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 10/113 (8%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            LL+ ALT         + Y++LE LGD  L   ++  L     +  EG L+    S  S
Sbjct: 630 RLLQLALT--------PQVYQKLELLGDAFLKCSLALHLHTRHPTLTEGALTRMRQSAES 681

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
                 + ++L     +              + +  D  ES++AA+ L  G E
Sbjct: 682 NHVLGVLTKKLPSP--VLEVITDAHPGIQPDSKVYGDTFESILAAVLLACGEE 732



 Score = 35.7 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 43/99 (43%)

Query: 36  YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95
           + + ++RLE LGD +LG +++  L   F +A  G L      LV  ET + + R L L  
Sbjct: 328 HTDIFQRLELLGDAVLGFIVTARLLCLFPNASIGTLVELKMELVRNETLNHLTRMLGLPQ 387

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
              +S+ L     ++    +  V         ++G  E 
Sbjct: 388 LAEISNQLLASSKTWADMYEEIVGSIFTGPNGINGCEEF 426


>gi|88769943|gb|ABD51459.1| H1L [Squirrel poxvirus]
          Length = 390

 Score = 36.4 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 24/74 (32%)

Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            + DK+ ++  +      +          + +        V  + GP H P F   V +S
Sbjct: 296 MYADKFNEELPVTKVARWQSMNPVSVLAEYCQHTRREWVFVEQQQGPLHSPTFVAYVTVS 355

Query: 197 GLAPAQGMDCSKRA 210
           G         +K+ 
Sbjct: 356 GSRFPVERAHTKKE 369


>gi|195435718|ref|XP_002065826.1| GK18553 [Drosophila willistoni]
 gi|194161911|gb|EDW76812.1| GK18553 [Drosophila willistoni]
          Length = 248

 Score = 36.4 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              RD   EL E+  +     P +++  ++   + P+F     ++ +    G+   K+ A
Sbjct: 32  DPNRDMFKELCEFCKSHDMPYPVFEIVEQNRNPNAPKFVACCTLTSIKR-YGISDKKKEA 90

Query: 212 EQVAAAEVL 220
            Q AA+ +L
Sbjct: 91  HQKAASAIL 99


>gi|145501699|ref|XP_001436830.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403974|emb|CAK69433.1| unnamed protein product [Paramecium tetraurelia]
          Length = 589

 Score = 36.4 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/156 (9%), Positives = 35/156 (22%), Gaps = 5/156 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M   +  ++E+ + + F+N   + + LTH     + Q+    +     + L       + 
Sbjct: 289 MKKFQQKSIEQMLEFGFSNCCFMARVLTHRIYPVTCQQINYLI-----KTLKSQSKKHMT 343

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N     ++       N+            E    S   V+                    
Sbjct: 344 NGKRKQQQASKKQNLNNYAQQYIPCFHEGECGSNSCTCVTCHKYCCCKGQCQQKSKSCDC 403

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
            +                       +  K       
Sbjct: 404 RVCGYDEKKQKHSCPCYISGYECDPQLCKCQSCSNK 439


>gi|219124437|ref|XP_002182510.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405856|gb|EEC45797.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|225382102|gb|ACN89263.1| putative dicer-like protein [Phaeodactylum tricornutum]
          Length = 963

 Score = 36.1 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 21  SLLEKALT-HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
            LL +A T H       Q  YERLEFLGD +LG  ++        S +   
Sbjct: 508 RLLLEATTVHP------QPFYERLEFLGDAVLGFCLALNAMTRNASLEYDW 552


>gi|301628369|ref|XP_002943328.1| PREDICTED: mucin-2-like, partial [Xenopus (Silurana) tropicalis]
          Length = 1565

 Score = 36.1 bits (81), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/155 (7%), Positives = 34/155 (21%), Gaps = 7/155 (4%)

Query: 52   GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
                            + +    +++ V+         + +       +           
Sbjct: 902  KKCDIITNNVFARCHSKVDPKPFYDACVNDVCSCDTGGDCECFCTAVAAYAQLCAKADVC 961

Query: 112  TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKF 169
               +   +  +    Y     E    +     + R++          + T L+       
Sbjct: 962  IHWRTPEICPIFCDYYNTNENECMWHYFACGPEDRSIHHITKYCHSPSVTHLEGCYPTCP 1021

Query: 170  GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
               P Y    +S   H         I+ +  + G 
Sbjct: 1022 TERPYYDEINKSCVSH-----CSCIINNITYSIGQ 1051


>gi|327396952|dbj|BAK14318.1| RNase III-like ribonuclease [Red sea bream iridovirus]
          Length = 265

 Score = 36.1 bits (81), Expect = 3.7,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 55/227 (24%), Gaps = 31/227 (13%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE------- 70
            N  +     THS        +YE  E LGD I+  ++       F              
Sbjct: 37  KNTQVFHSVFTHS--KAHPVNNYEWYEKLGDAIIASVMPQYYMERFPKLAHDPSATVART 94

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIA----- 124
           +S    +  S  T S +A+++    ++                 +  D  E+++      
Sbjct: 95  VSQLAITYQSGTTMSTIAQKMGFLKWVVAHRDGAAPASYKEQQRLLEDTFEAMVGAISIT 154

Query: 125 --------ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
                                       +            +      +           
Sbjct: 155 MDDATGVKCSGHIACYRFLKYAYGLINMRLDGLIDNKSMLKELIDMHSSVLDSFTFEYTN 214

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                   H       V ++ L        SKR  E+V A +VL + 
Sbjct: 215 NVMTLTVAHGKYTVSEVNVNNL--------SKRELEKVLAGKVLAQL 253


>gi|159114523|ref|XP_001707486.1| Hypothetical protein GL50803_3666 [Giardia lamblia ATCC 50803]
 gi|157435591|gb|EDO79812.1| hypothetical protein GL50803_3666 [Giardia lamblia ATCC 50803]
          Length = 809

 Score = 36.1 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 9/151 (5%), Positives = 34/151 (22%), Gaps = 1/151 (0%)

Query: 32  ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
                  + E  EFL D  + ++    ++        G+ +     ++ +     +    
Sbjct: 243 FDKQPILNEENFEFLYDSGVYIIHIPHVYMKRTCKLGGDYAAYPCKMIESIIGPALWDRY 302

Query: 92  DLASFIRVSSDLRKDVCSF-MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
                +R  +   +              +   +         +    + +          
Sbjct: 303 GHTFKLRFPNCSHQVSGPMGTEICCKCHMNDSVHWRIRVIPDDQPIWYNNDCTCGANCSC 362

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
               +  ++      +  F   P       +
Sbjct: 363 RCHTKTPESVFTVTYNCVFWCVPCATRCIYT 393


>gi|88602406|ref|YP_502584.1| ribonuclease III [Methanospirillum hungatei JF-1]
 gi|88187868|gb|ABD40865.1| RNAse III [Methanospirillum hungatei JF-1]
          Length = 151

 Score = 36.1 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 5/131 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
             LE+  GY F ++SLL +ALT  + S           + L  LGD ++ L+I T L   
Sbjct: 8   EQLERITGYTFRDKSLLLRALTRLAYSKEQGLSEDSHLDALATLGDAVIELIILTRLVKG 67

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                +G +S++   LV+       AR + L  ++R      +        + A+ +E+ 
Sbjct: 68  -GEHDKGAVSLKKMDLVNMSVLRDAARSIHLEQYVRWGKGEARMHVWTSGRVLAECMEAF 126

Query: 123 IAALYLDGGIE 133
             ALYLDGGI+
Sbjct: 127 AGALYLDGGID 137


>gi|118396910|ref|XP_001030791.1| hypothetical protein TTHERM_01014450 [Tetrahymena thermophila]
 gi|89285106|gb|EAR83128.1| hypothetical protein TTHERM_01014450 [Tetrahymena thermophila SB210]
          Length = 1140

 Score = 36.1 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 43/190 (22%), Gaps = 11/190 (5%)

Query: 31   SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE-TCSQVAR 89
            S     Q+ Y   EF  D  + +         ++S       V  +     +      A+
Sbjct: 904  SYLVQLQQKYIFFEFTYD--ISVFNGNQFRCFYESKPLQIQKVYSDVHSKKKDAQHDAAK 961

Query: 90   ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149
            +        +              +    ++       L+   E                
Sbjct: 962  KFIPHLLYYIKYKKPYFEDDDQEMLYLKSIKESTQINNLNQNEEQVSIHNQINQDLLLQT 1021

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS--GLAPAQ--GMD 205
            S        T + +     F          +        F   V          Q  G  
Sbjct: 1022 SYNDEIQGVTLIVQQHEKTFLQDVLKCYDSQELN----FFKCTVTFQKQNKVIFQEYGFG 1077

Query: 206  CSKRAAEQVA 215
             SK+ A+QVA
Sbjct: 1078 SSKKNAKQVA 1087


>gi|328722207|ref|XP_003247506.1| PREDICTED: double-stranded RNA-specific editase 1-like
           [Acyrthosiphon pisum]
          Length = 281

 Score = 36.1 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +D  +T  +EI G     G   SK  A+Q A  ++ +  
Sbjct: 85  NDKTYTATIEIDGQTY-TGNHISKTEAKQKACEQLFRSM 122


>gi|317029357|ref|XP_001391402.2| RNase III domain protein [Aspergillus niger CBS 513.88]
          Length = 258

 Score = 36.1 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILG 52
            A+TH S     +   +RL FLG RI+ 
Sbjct: 108 LAVTHKSFDQGRRGFNDRLAFLGKRIVQ 135


>gi|255949164|ref|XP_002565349.1| Pc22g14250 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592366|emb|CAP98713.1| Pc22g14250 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 255

 Score = 36.1 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILG 52
            A+TH S     +   +RL FLG RI+ 
Sbjct: 103 LAVTHKSFDQGRRGFNDRLAFLGKRIVQ 130


>gi|170095525|ref|XP_001878983.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164646287|gb|EDR10533.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 232

 Score = 36.1 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 12/133 (9%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           +S L +A    +     +++ + LEF+GDR++ L  S ++    +S+       R  S  
Sbjct: 35  KSRLRRA---QNSVKRSKDNNDLLEFIGDRVVNLACSLIVDKVKESSDHHMFVGRVLS-- 89

Query: 80  SAETCSQVARELDLASF-------IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
           + +T  ++A +LDL              ++             AD+ ES   A+Y + G 
Sbjct: 90  NNDTLGRIAYQLDLHKSAHLDQRDDFEVTEWNPRHAISPPKALADLFESYAGAVYEEHGW 149

Query: 133 EVAGTFVDKYWKQ 145
           E    ++ + +  
Sbjct: 150 ERVMDWLKQIFTP 162


>gi|134075874|emb|CAL00253.1| unnamed protein product [Aspergillus niger]
          Length = 339

 Score = 36.1 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILG 52
            A+TH S     +   +RL FLG RI+ 
Sbjct: 108 LAVTHKSFDQGRRGFNDRLAFLGKRIVQ 135


>gi|119479385|ref|XP_001259721.1| RNase III domain protein [Neosartorya fischeri NRRL 181]
 gi|119407875|gb|EAW17824.1| RNase III domain protein [Neosartorya fischeri NRRL 181]
          Length = 259

 Score = 36.1 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILG 52
            A+TH S     +   +RL FLG RI+ 
Sbjct: 109 LAVTHKSFDQGRRGFNDRLAFLGKRIVQ 136


>gi|115400141|ref|XP_001215659.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114191325|gb|EAU33025.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 264

 Score = 36.1 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILG 52
            A+TH S     +   +RL FLG RI+ 
Sbjct: 115 LAVTHKSFDQGRRGFNDRLAFLGKRIVQ 142


>gi|70997880|ref|XP_753672.1| RNase III domain protein [Aspergillus fumigatus Af293]
 gi|66851308|gb|EAL91634.1| RNase III domain protein [Aspergillus fumigatus Af293]
 gi|159126595|gb|EDP51711.1| RNase III domain protein [Aspergillus fumigatus A1163]
          Length = 259

 Score = 36.1 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILG 52
            A+TH S     +   +RL FLG RI+ 
Sbjct: 109 LAVTHKSFDQGRRGFNDRLAFLGKRIVQ 136


>gi|198422239|ref|XP_002129221.1| PREDICTED: similar to PDZ and LIM domain 5 [Ciona intestinalis]
          Length = 333

 Score = 35.7 bits (80), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/131 (8%), Positives = 24/131 (18%), Gaps = 6/131 (4%)

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                 ++      + +            I        +                  + +
Sbjct: 172 YSTVEGINFHKECFICAAPNCQGNLDAGFIVDGGKAYCVTCHNKYFSQPCLKCNKPIFEE 231

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
                + ++        +       GV          G DH+  F V           G 
Sbjct: 232 AFRALNCQWHLSCFICTECNQPMYDGVFHMEGGRVYCGEDHERLFGVTCYACRKLIGPG- 290

Query: 205 DCSKRAAEQVA 215
                 +E  A
Sbjct: 291 -----DSEMNA 296


>gi|148643821|ref|YP_001274334.1| DNA repair ATPase [Methanobrevibacter smithii ATCC 35061]
 gi|148552838|gb|ABQ87966.1| predicted ATPase involved in DNA repair [Methanobrevibacter smithii
           ATCC 35061]
          Length = 853

 Score = 35.7 bits (80), Expect = 4.8,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 53/215 (24%), Gaps = 15/215 (6%)

Query: 5   RYSTLEKRIGYAFANRSL----LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +   L K I Y F    L    +  A+TH SI    +   +         L   +  + +
Sbjct: 68  KLYEL-KIIDYKFKCMLLEAYQMRNAITHKSIEDFLKSDNKIP-----FQLHRSLFDIAW 121

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +F    E                +    +         +            S  ++   
Sbjct: 122 KYFQLCNENYYYPGKPEYTPIYNLNSKTIKSTPKPSDNRNFSRCIICGRANDSKNSNFCI 181

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           S    L     I      ++     +   +        ++L      K  +    +    
Sbjct: 182 SCNNELEYQNEIINLKNNLNISHFTKEEVNQIHSSMYTSQLLIELTTKKLLKKTNRYYSL 241

Query: 181 SGPDHDP--RFTVVVEISGLAPAQ---GMDCSKRA 210
           +  +++    FT           +   G   SK+ 
Sbjct: 242 NESEYEKLIEFTYECYDMEKTLTEFLNGKYTSKQI 276


>gi|46132944|ref|XP_389185.1| hypothetical protein FG09009.1 [Gibberella zeae PH-1]
          Length = 195

 Score = 35.7 bits (80), Expect = 4.8,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 18/56 (32%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            A+TH S     +   +RL  LG   L +  +  +      ++  +          
Sbjct: 50  LAVTHKSFDQGRRGFNDRLALLGRMTLIMETTKTIVAKDPMSQPKKDKYNREPFTH 105


>gi|194695624|gb|ACF81896.1| unknown [Zea mays]
          Length = 181

 Score = 35.7 bits (80), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 18  ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S       +  YERLE++G +I  L+++  L      A    L+
Sbjct: 38  RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDLVMAERLLMKHLDAPGRWLA 97

Query: 73  VRFNSLVSAETCSQVARELDLASFIRV 99
            +    +  + C +  R+  L  +I  
Sbjct: 98  EKHRRTLMNKYCGRYLRDKHLQHYIIY 124


>gi|302410091|ref|XP_003002879.1| RNase III domain-containing protein [Verticillium albo-atrum
           VaMs.102]
 gi|261357903|gb|EEY20331.1| RNase III domain-containing protein [Verticillium albo-atrum
           VaMs.102]
          Length = 279

 Score = 35.7 bits (80), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 25  KALTHSSISHSYQESYERLEFLG 47
            A+TH S  +  +   +RL FLG
Sbjct: 133 LAVTHKSFDYGRRGFNDRLAFLG 155


>gi|297707365|ref|XP_002830479.1| PREDICTED: hypothetical protein LOC100455985 [Pongo abelii]
          Length = 500

 Score = 35.7 bits (80), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/154 (9%), Positives = 37/154 (24%), Gaps = 3/154 (1%)

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            +  H        + +     V   TC  +   + +  ++ V + +   VC++       
Sbjct: 76  YVHTHIYVYMCMYIHICVYICVCTYTCVYMCMYIHVCIYVYVHTRVYICVCTYTCVYMCM 135

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK-FGVTPEYK 176
            +   I              +   Y                  +  + H   +     + 
Sbjct: 136 YIHVCIYVYVHTRVYICVCIYTCVYVCVYIHVCIYVCIYTYVCIYVYTHMCVYMCRYIHI 195

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDC--SK 208
             +     H       V+ + +     +    SK
Sbjct: 196 CVYMCRYIHICVCMCEVDDNKVRECPSIGKLASK 229


>gi|291239721|ref|XP_002739770.1| PREDICTED: multiple EGF-like-domains 10-like [Saccoglossus
           kowalevskii]
          Length = 1336

 Score = 35.7 bits (80), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 30/154 (19%), Gaps = 2/154 (1%)

Query: 30  SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
           +S +H   +      +LGDR      S     + +   +  L           TC   + 
Sbjct: 498 ASCNHISGQCLCTPGWLGDRCAETCESWKYGFNCEKDCDCNLDNSAGCNAVDGTCICHSG 557

Query: 90  ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149
                     SS       +  T    +   S                   +        
Sbjct: 558 YQGAHCNSMCSSGYW--GGACDTPCDCEQQASCDPVDGTCECPAGYTGSRCENICNEGFY 615

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
                           +           +  +GP
Sbjct: 616 GRNCETPCPDCTNTNGNCDPVDGHCGCKSGWTGP 649


>gi|169780854|ref|XP_001824891.1| RNase III domain protein [Aspergillus oryzae RIB40]
 gi|238504942|ref|XP_002383700.1| RNase III domain protein [Aspergillus flavus NRRL3357]
 gi|83773631|dbj|BAE63758.1| unnamed protein product [Aspergillus oryzae]
 gi|220689814|gb|EED46164.1| RNase III domain protein [Aspergillus flavus NRRL3357]
          Length = 255

 Score = 35.7 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILG 52
            A+TH S     +   +RL FLG RI+ 
Sbjct: 108 LAVTHKSFDQGRRGFNDRLAFLGRRIVE 135


>gi|154293059|ref|XP_001547085.1| hypothetical protein BC1G_14795 [Botryotinia fuckeliana B05.10]
 gi|150845699|gb|EDN20892.1| hypothetical protein BC1G_14795 [Botryotinia fuckeliana B05.10]
          Length = 264

 Score = 35.7 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILG 52
            A+TH S     +   +RL + G RIL 
Sbjct: 112 LAITHKSFDQGRRGFNDRLAYFGRRILN 139


>gi|291065638|gb|ADD73908.1| dsRNA binding protein [Banna virus]
          Length = 207

 Score = 35.7 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
                +        G+   ++     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 1   MDPVSVVHNFARSQGLPLNFETVGCEGPSHDPRFVIECKLLDFKH-QCTDSSKKRAIQK 58


>gi|316974656|gb|EFV58139.1| ATPase family AAA domain-containing protein 3-A [Trichinella
           spiralis]
          Length = 812

 Score = 35.7 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 10/70 (14%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDH---DPRF------TVVVEISGLAPAQGMDCSKRAAEQ 213
           +  +    V         +  DH    P F         V  +G    +G   +++ A+ 
Sbjct: 646 QMFNEICDVARNVISVEITYDDHPTEVPEFNSAKCVCCKVVWNGR-LVRGFGINQKYAKM 704

Query: 214 VAAAEVLKRE 223
            AA + L + 
Sbjct: 705 DAAQKALVKL 714


>gi|9629651|ref|NP_044945.1| replicase polyprotein [Drosophila C virus]
 gi|81920773|sp|O36966|POLN_DCVEB RecName: Full=Replicase polyprotein; Contains: RecName:
           Full=Protein 1A; Contains: RecName: Full=Protein 2A;
           Contains: RecName: Full=Protein 2B; Contains: RecName:
           Full=Protein 2C; Contains: RecName: Full=Protein 3A;
           Contains: RecName: Full=Protein 3B; Contains: RecName:
           Full=3C-like protease; Contains: RecName:
           Full=RNA-directed RNA polymerase 3D-POL
 gi|2388673|gb|AAC58807.1| replicase polyprotein [Drosophila C virus]
          Length = 1759

 Score = 35.7 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 3/81 (3%)

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
                R L +     + K    +     +    +Y       P   P F       G   
Sbjct: 7   MACLNRILMNKMMFVEDKISTLKMVADYYQKEVKYDFDAVESPREAPVFRCTCRFLGYTI 66

Query: 201 -AQGMDCSKRAAEQVAAAEVL 220
             QG+   K+  +Q AA ++L
Sbjct: 67  MTQGIG--KKNPKQEAARQML 85


>gi|303319779|ref|XP_003069889.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240109575|gb|EER27744.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320034181|gb|EFW16126.1| hypothetical protein CPSG_07176 [Coccidioides posadasii str.
           Silveira]
          Length = 267

 Score = 35.3 bits (79), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           +A+TH S     +   +RL +LG +++ L  +  L     S  + 
Sbjct: 116 QAVTHKSFDQGRRGFNDRLAYLGKQLVTLQATLALIQDPASYSQK 160


>gi|119183345|ref|XP_001242722.1| hypothetical protein CIMG_06618 [Coccidioides immitis RS]
          Length = 267

 Score = 35.3 bits (79), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           +A+TH S     +   +RL +LG +++ L  +  L     S  + 
Sbjct: 116 QAVTHKSFDQGRRGFNDRLAYLGKQLVTLQATLALIQDPASYSQK 160


>gi|9663121|emb|CAC01121.1| drbp76 alpha [Homo sapiens]
          Length = 245

 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 95  ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 123


>gi|9663124|emb|CAC01124.1| ILF3 [Homo sapiens]
          Length = 441

 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 91  ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 119


>gi|9663123|emb|CAC01123.1| drbp76 gamma [Homo sapiens]
          Length = 237

 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 91  ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 119


>gi|9663122|emb|CAC01122.1| drbp76 [Homo sapiens]
          Length = 249

 Score = 35.3 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 91  ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 119


>gi|312371610|gb|EFR19749.1| hypothetical protein AND_21879 [Anopheles darlingi]
          Length = 1007

 Score = 35.3 bits (79), Expect = 6.9,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 45/171 (26%), Gaps = 26/171 (15%)

Query: 45  FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
           FLG   +  L    L   +      ++  +   +              +   +      +
Sbjct: 819 FLGSTGVNCLSQRELAEGYQPWARRDMMKQSAPVTG-----------GMGMHLLQKMGWQ 867

Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK---------------QRALK 149
                      +     L   L   G  E      +  ++                  +K
Sbjct: 868 PGEGLGKEKNGSLHPLLLDVKLDKRGLGEGEDKHRNMPFQAPLFSRRGDNRSRFPPNQVK 927

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
                +   + L E+A  +    P Y++   SGP H   F   V ++GL  
Sbjct: 928 VCTEGKHPVSILGEYASKRKWNAPMYELVHESGPGHAKNFIFKVLVNGLEY 978


>gi|307567933|pdb|2L33|A Chain A, Solution Nmr Structure Of Drbm 2 Domain Of Interleukin
           Enhancer- Binding Factor 3 From Homo Sapiens, Northeast
           Structural Genomics Consortium Target Hr4527e
          Length = 91

 Score = 34.9 bits (78), Expect = 7.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    QG   +
Sbjct: 35  ISETGGSHDKRFVMEVEVDGQKF-QGAGSN 63


>gi|291065600|gb|ADD73889.1| dsRNA binding protein [Banna virus]
 gi|291065604|gb|ADD73891.1| dsRNA binding protein [Banna virus]
 gi|291065606|gb|ADD73892.1| dsRNA binding protein [Banna virus]
          Length = 208

 Score = 34.9 bits (78), Expect = 7.7,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
                 +        G+   +K     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 1   MMDPVSVVHSFARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59


>gi|223712803|gb|ACN22083.1| VP12 [Banna virus]
          Length = 208

 Score = 34.9 bits (78), Expect = 8.1,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
                 +        G+   +K     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 1   MMDPVSVVHSFARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59


>gi|291065602|gb|ADD73890.1| dsRNA binding protein [Banna virus]
 gi|291065608|gb|ADD73893.1| dsRNA binding protein [Banna virus]
 gi|291065610|gb|ADD73894.1| dsRNA binding protein [Banna virus]
 gi|291065612|gb|ADD73895.1| dsRNA binding protein [Banna virus]
 gi|291065616|gb|ADD73897.1| dsRNA binding protein [Banna virus]
          Length = 208

 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
                 +        G+   +K     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 1   MMDPVSVVHSFARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59


>gi|149582794|ref|XP_001521100.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 173

 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +G  HD RF + VE+ G    +G   +
Sbjct: 31  ISETGGSHDKRFVMEVEVDGQKF-RGAGPN 59


>gi|210161026|gb|ACJ09363.1| VP12 [Banna virus]
          Length = 208

 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
                 +        G+   +K     GP HDPRF +  +       Q  D SK+ A Q 
Sbjct: 1   MMDPVSVVHSFARSQGLPLNFKTVGCEGPSHDPRFIIECKFLDFQH-QCTDSSKKRAIQK 59


>gi|145476953|ref|XP_001424499.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391564|emb|CAK57101.1| unnamed protein product [Paramecium tetraurelia]
          Length = 484

 Score = 34.9 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 31/133 (23%)

Query: 29  HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88
           H S  H   ++   L    D  L +             K+   +  +    S +     +
Sbjct: 287 HVSSLHFNNQNNSLLSSGWDANLVMWNIDQKDIVMKQFKKEHQAKIYCVQYSNDNQIIAS 346

Query: 89  RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
             LD    +     L +         +            +          V  Y  ++ +
Sbjct: 347 CSLDKTIRLWDIHGLAQIGQPLQGHSEKVDWIQFTPQYLISCSQSEKNIIVWDYMHRQQI 406

Query: 149 KSGKFRRDAKTEL 161
            +     D    +
Sbjct: 407 WNFIPGNDPHRFV 419


>gi|291065614|gb|ADD73896.1| dsRNA binding protein [Banna virus]
          Length = 208

 Score = 34.9 bits (78), Expect = 8.6,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
                 +        G+   +K     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 1   MMDPVSVVHSFARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59


>gi|224613114|dbj|BAH24222.1| dsRNA-specific ribonuclease RNaseIII [Mulberry dwarf phytoplasma]
          Length = 157

 Score = 34.9 bits (78), Expect = 9.2,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 12/37 (32%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            T +YK+    G  H   F   V +       G   +
Sbjct: 87  KTIQYKIVQEQGFAHSKNFVAEVYLEKNLLGTGEGNT 123


>gi|320158397|ref|YP_004190775.1| putative DNA-dependent RNA polymerase [Vibrio vulnificus MO6-24/O]
 gi|319933709|gb|ADV88572.1| possible DNA-dependent RNA polymerase [Vibrio vulnificus MO6-24/O]
          Length = 927

 Score = 34.9 bits (78), Expect = 9.3,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 46/184 (25%), Gaps = 10/184 (5%)

Query: 42  RLEFLGDRILG--LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
           +L F G   +      +  +       K   + +     V   T  +  + +       +
Sbjct: 435 KLNFQGADYVKALCQFADGVALGKHGLKWLMIHMANLMGVDKVTFEERVKWVKEHKAQII 494

Query: 100 SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT 159
           +       C          ++++  A  L     +        +   AL           
Sbjct: 495 ALAKDPRECRDFLMSADKPMQAIACATELAEAWSMKNHEEFVSYIPIALDGSCSGLQILG 554

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAA 217
                      V                 + VV +I  +      G   SK  AE +AA 
Sbjct: 555 AALRCEKTGEHVNLIPAGRVAD------IYRVVADIVTNEFKSMVGECKSKEDAEALAAQ 608

Query: 218 EVLK 221
           + L+
Sbjct: 609 KALE 612


>gi|169218484|gb|ACA50132.1| VP12 [Banna virus]
          Length = 208

 Score = 34.9 bits (78), Expect = 9.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
                 +        G+   +K     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 1   MMDPVSVVHSFARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59


>gi|210161028|gb|ACJ09364.1| VP12 [Banna virus]
 gi|210161030|gb|ACJ09365.1| VP12 [Banna virus]
          Length = 208

 Score = 34.9 bits (78), Expect = 9.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
                 +        G+   +K     GP HDPRF +  +       Q  D SK+ A Q 
Sbjct: 1   MMDPVSVVHSFARSQGLPLNFKTVGCEGPSHDPRFIIECKFLDFQH-QCTDSSKKRAIQK 59


>gi|291065624|gb|ADD73901.1| dsRNA binding protein [Banna virus]
 gi|291065634|gb|ADD73906.1| dsRNA binding protein [Banna virus]
 gi|291065636|gb|ADD73907.1| dsRNA binding protein [Banna virus]
          Length = 208

 Score = 34.5 bits (77), Expect = 9.8,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
                 +        G+   +K     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 1   MMDPVSVVHSFARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59


>gi|156379115|ref|XP_001631304.1| predicted protein [Nematostella vectensis]
 gi|156218342|gb|EDO39241.1| predicted protein [Nematostella vectensis]
          Length = 440

 Score = 34.5 bits (77), Expect = 9.8,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 2/167 (1%)

Query: 48  DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
           D +   + + +  ++     +  +    +   ++E  ++     D+     V   +    
Sbjct: 253 DVVKAYIKTAIECDNSFGNTKYCVLRLMHEQYTSEAAAEFTAAKDIREMCEVVGLVSFYK 312

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
            + +T            +    G          ++    + K        K+ L EW   
Sbjct: 313 NTLLTRQAKQQALEKCGSQVGTGMARSPYGLCLEFLILFSRKDYPDTITPKSVLFEWTRD 372

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQ 213
           +    P Y++  R+  + D  F  +V +     A    + SKR AEQ
Sbjct: 373 QKLQPPSYEMVSRTREE-DCSFKSIVIVDNTKYASTEWEKSKRHAEQ 418


>gi|224613128|dbj|BAH24234.1| dsRNA-specific ribonuclease RNaseIII [Porcelain vine witches'-broom
           phytoplasma]
          Length = 131

 Score = 34.5 bits (77), Expect = 9.9,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 12/37 (32%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            T +YK+    G  H   F   V +       G   +
Sbjct: 61  KTIQYKIVQEQGFAHSKNFVAEVYLEKNLLGTGEGNT 97


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.307    0.113    0.329 

Lambda     K      H
   0.267   0.0351    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,820,155,439
Number of Sequences: 14124377
Number of extensions: 90227601
Number of successful extensions: 266587
Number of sequences better than 10.0: 5225
Number of HSP's better than 10.0 without gapping: 4324
Number of HSP's successfully gapped in prelim test: 901
Number of HSP's that attempted gapping in prelim test: 252118
Number of HSP's gapped (non-prelim): 8301
length of query: 227
length of database: 4,842,793,630
effective HSP length: 134
effective length of query: 93
effective length of database: 2,950,127,112
effective search space: 274361821416
effective search space used: 274361821416
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 78 (34.9 bits)